Citrus Sinensis ID: 014212

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------43
Protein Sequence
MPNMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQVTKL
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccEEEcccccccEEEEccccccHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHcccccEEEcccccccccccccccHHHHHHHHccHHHHHHHHHHcccHHHHHHHcccEEEEEccccccccccHHHHHHcccccccccccccccccccccccccccccccccccEEEEEEccccccccEEEEcccEEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHcccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccEEEEEcccccEEEEEcEccccHHHHHHHHHHHccccccccEEEccccccccccHHHHHHHHHHHHHHccccEEEcccccccHHHHccccHHHHHHHHccHHHHHHHHHHHcccccEEEEcccEEEEcccccccccccHHHHHccccccccccccHHHHHHHcEEcccccccccccccEEEEEEEEEEEccccEEEEEccEEEEEcccccHHHccccc
Coil and Loop (DISEMBL)
mpnmetenssvSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASkaieidprypkgyyrrGAAYLAMGKFKEALKDFQQvkklspndpdaAQKVKECEKAVKKLKFEEaiavpeserhsvadsidyqsievepqysgariegdVITLDFVKKMMDdfknqkclhKRYAFQIVLQTREMLRAlpslvdidipdgkhftvcgdvHGQFYDLLNIfelnglpseenpylfngdfvdrgsFSVEVILTLFAFKcmcpsaiylsrgnhesksmnkiygfeGEVRSKLSETFVELFAEVFCclplahvlnQKVFVVHGGlfsvdgvklsdiktidrfceppeeglmcellwsdpqplpgrgpskrgvglSFVVRshevkdegyeiehdgklitvfsapnycdqvtkl
Flexible Loop (DISEMBL)
mpnmetenssvsrAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQdaskaieidprypkGYYRRGAAYLAMGKFKEALKDFQQVKKlspndpdaaQKVKECEKAVKKLKFeeaiavpeserhsvadsidyqsievepqysgarieGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYlsrgnhesksMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFsvdgvklsdiKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFVVRSHEvkdegyeiehdgklitvfsapnycdqvtkl
Low Complexity Region (SEG)
MPNMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQVTKL
Disordered region (IsUnstruct)
***********************AFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDF**********************************************IDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNH***SMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWS**************VGLSFVVRSHEVKDEGYEIEHDGKLITVFSAPNYCD*****
Disordered Region (DISOPRED)
*****************KALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD*************************************************RIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQVTKL
Disordered Region (DISEMBL)
*************AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN*********ECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQVTKL
Disordered Region (DISPRO)
*********SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQ****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPNMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQVTKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	429	2.2.26 [Sep-21-2011]
Q84XU2	538	Serine/threonine-protein	no	no	0.986	0.786	0.731	0.0
Q84K11	556	Serine/threonine-protein	N/A	no	0.629	0.485	0.874	1e-150
Q60676	499	Serine/threonine-protein	yes	no	0.974	0.837	0.554	1e-141
P53042	499	Serine/threonine-protein	yes	no	0.972	0.835	0.555	1e-141
P53041	499	Serine/threonine-protein	yes	no	0.974	0.837	0.551	1e-141
O43049	473	Serine/threonine-protein	yes	no	0.962	0.873	0.497	1e-121
P53043	513	Serine/threonine-protein	yes	no	0.967	0.808	0.398	2e-91
Q05681	558	Serine/threonine-protein	N/A	no	0.545	0.419	0.4	1e-50
Q4WUR1	534	Serine/threonine-protein	no	no	0.561	0.451	0.4	4e-50
P48482	312	Serine/threonine-protein	no	no	0.575	0.791	0.387	2e-49

>sp|Q84XU2|PPP5_ARATH Serine/threonine-protein phosphatase 5 OS=Arabidopsis thaliana GN=PAPP5 PE=1 SV=1

 Score =  724 bits (1869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/495 (73%), Positives = 394/495 (79%), Gaps = 72/495 (14%)

Query: 4   MET--ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL 61
           MET  ENS VSRAEE K+ ANEAF+  KYS AIDLY++AIELNS NAVY+ANRAFAHTKL
Sbjct: 1   METKNENSDVSRAEEFKSQANEAFKGHKYSSAIDLYTKAIELNSNNAVYWANRAFAHTKL 60

Query: 62  EEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121
           EEYGSAIQDASKAIE+D RY KGYYRRGAAYLAMGKFK+ALKDFQQVK+LSPNDPDA +K
Sbjct: 61  EEYGSAIQDASKAIEVDSRYSKGYYRRGAAYLAMGKFKDALKDFQQVKRLSPNDPDATRK 120

Query: 122 VKECEKAVKKLKFEEAIAVPESER---------HSVADSIDYQSI--------------- 157
           +KECEKAV KLKFEEAI+VP SER         H++ +     S+               
Sbjct: 121 LKECEKAVMKLKFEEAISVPVSERRSVAESIDFHTIGNKPRSSSMPTKTALAAVVAAVMV 180

Query: 158 ------------------------------EVEPQYSGARIEGDVITLDFVKKMMDDFKN 187
                                         +VEPQYSGARIEG+ +TLDFVK MM+DFKN
Sbjct: 181 VAVRGFATTEILMVLVSVVLGTFWWGSFSGKVEPQYSGARIEGEEVTLDFVKTMMEDFKN 240

Query: 188 QKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLP 247
           QK LHKRYA+QIVLQTR++L ALPSLVDI +P GKH TVCGDVHGQFYDLLNIFELNGLP
Sbjct: 241 QKTLHKRYAYQIVLQTRQILLALPSLVDISVPHGKHITVCGDVHGQFYDLLNIFELNGLP 300

Query: 248 SEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVR 307
           SEENPYLFNGDFVDRGSFSVE+ILTLFAFKCMCPS+IYL+RGNHESKSMNKIYGFEGEVR
Sbjct: 301 SEENPYLFNGDFVDRGSFSVEIILTLFAFKCMCPSSIYLARGNHESKSMNKIYGFEGEVR 360

Query: 308 SKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGL 367
           SKLSE FV+LFAEVFC LPLAHV+N KVFVVHGGLFSVDGVKLSDI+ IDRFCEPPEEGL
Sbjct: 361 SKLSEKFVDLFAEVFCYLPLAHVINGKVFVVHGGLFSVDGVKLSDIRAIDRFCEPPEEGL 420

Query: 368 MCELLWSDPQPLPGRGPSKRGVGLSF----------------VVRSHEVKDEGYEIEHDG 411
           MCELLWSDPQPLPGRGPSKRGVGLSF                +VRSHEVKDEGYE+EHDG
Sbjct: 421 MCELLWSDPQPLPGRGPSKRGVGLSFGGDVTKRFLQDNNLDLLVRSHEVKDEGYEVEHDG 480

Query: 412 KLITVFSAPNYCDQV 426
           KLITVFSAPNYCDQ+
Sbjct: 481 KLITVFSAPNYCDQM 495

Isoform 2 dephosphorylates phosphorylated phytochromes, with a preference toward Pfr forms, and enhances phytochrome-mediated photoresponses, probably by enhancing their stability and their binding affinity for light signal transducers such as NDPK2. Can use para-nitrophenylphosphate (pNPP) as substrate.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 6

>sp|Q84K11|PPP5_SOLLC Serine/threonine-protein phosphatase 5 OS=Solanum lycopersicum GN=PP5 PE=1 SV=1

 Score =  533 bits (1372), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 250/286 (87%), Positives = 265/286 (92%), Gaps = 16/286 (5%)

Query: 157 IEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDI 216
           +EVEPQY+GARIEGDV+TLDFVKKM+DDFKNQK LHKRYA+QIVLQTREMLRALPSLVDI
Sbjct: 228 LEVEPQYAGARIEGDVVTLDFVKKMLDDFKNQKNLHKRYAYQIVLQTREMLRALPSLVDI 287

Query: 217 DIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAF 276
            +P+GKHFTVCGDVHGQFYDLLNIFELNGLPSE+NPYLFNGDFVDRGSFS+EVILTLFAF
Sbjct: 288 VVPEGKHFTVCGDVHGQFYDLLNIFELNGLPSEDNPYLFNGDFVDRGSFSLEVILTLFAF 347

Query: 277 KCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVF 336
           KCMCPSAI+L+RGNHESKSMNKIYGFEGEVRSKLSE FVELFAEVFCCLPLAHV+N+KVF
Sbjct: 348 KCMCPSAIHLARGNHESKSMNKIYGFEGEVRSKLSEIFVELFAEVFCCLPLAHVINEKVF 407

Query: 337 VVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF--- 393
           VVHGGLFSVDGVKLSDI+ IDRFCEPPEEGLMCELLWSDPQP PGRGPSKRGVGLSF   
Sbjct: 408 VVHGGLFSVDGVKLSDIRAIDRFCEPPEEGLMCELLWSDPQPQPGRGPSKRGVGLSFGGD 467

Query: 394 -------------VVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQV 426
                        VVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQ+
Sbjct: 468 VTKRFLQENNLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQM 513

Isoform 2 dephosphorylates phosphorylated phytochromes, with a preference toward Pfr forms, and enhances phytochrome-mediated photoresponses (By similarity). Can use para-nitrophenylphosphate (pNPP) and phosphorylated casein as substrate at pH 7.5 and 5.0.

Solanum lycopersicum (taxid: 4081)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q60676|PPP5_MOUSE Serine/threonine-protein phosphatase 5 OS=Mus musculus GN=Ppp5c PE=2 SV=2

 Score =  501 bits (1289), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 241/435 (55%), Positives = 315/435 (72%), Gaps = 17/435 (3%)

Query: 8   NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSA 67
           + ++ RAEELK  AN+ F+AK Y  AI  YSQAIELN  NA+YY NR+ A+ + E YG A
Sbjct: 22  DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPGNAIYYGNRSLAYLRTECYGYA 81

Query: 68  IQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127
           + DA++AIE+D +Y KGYYRR A+ +A+GKF+ AL+D++ V K+ PND DA  K +EC K
Sbjct: 82  LGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPNDKDAKMKYQECSK 141

Query: 128 AVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKN 187
            VK+  FE AIA  E  R SV DS+D +S+ +E +YSG ++E   +T+ F+K +M  +K+
Sbjct: 142 IVKQKAFERAIAGDE-HRRSVVDSLDIESMTIEDEYSGPKLEDGKVTITFMKDLMQWYKD 200

Query: 188 QKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLP 247
           QK LH++ A+QI++Q +E+L  L +LV+  + + +  TVCGD HGQFYDLLNIFELNGLP
Sbjct: 201 QKKLHRKCAYQILVQVKEVLCKLSTLVETTLKETEKITVCGDTHGQFYDLLNIFELNGLP 260

Query: 248 SEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVR 307
           SE NPY+FNGDFVDRGSFSVEVILTLF FK + P   +L RGNHE+ +MN+IYGFEGEV+
Sbjct: 261 SETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVK 320

Query: 308 SKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGL 367
           +K +    ELF+EVF  LPLA  +N KV ++HGGLFS DGV L DI+ I+R  +PP+ G 
Sbjct: 321 AKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSEDGVTLDDIRKIERNRQPPDSGP 380

Query: 368 MCELLWSDPQPLPGRGPSKRGVG----------------LSFVVRSHEVKDEGYEIEHDG 411
           MC+LLWSDPQP  GR  SKRGV                 L +++RSHEVK EGYE+ H G
Sbjct: 381 MCDLLWSDPQPQNGRSVSKRGVSCQFGPDVTKAFLEENQLDYIIRSHEVKAEGYEVAHGG 440

Query: 412 KLITVFSAPNYCDQV 426
           + +TVFSAPNYCDQ+
Sbjct: 441 RCVTVFSAPNYCDQM 455

May play a role in the regulation of RNA biogenesis and/or mitosis.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|P53042|PPP5_RAT Serine/threonine-protein phosphatase 5 OS=Rattus norvegicus GN=Ppp5c PE=2 SV=1

 Score =  501 bits (1289), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 241/434 (55%), Positives = 314/434 (72%), Gaps = 17/434 (3%)

Query: 9   SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAI 68
            ++ RAEELK  AN+ F+AK Y  AI  YSQAIELN  NA+YY NR+ A+ + E YG A+
Sbjct: 23  GTLKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYAL 82

Query: 69  QDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA 128
            DA++AIE+D +Y KGYYRR A+ +A+GKF+ AL+D++ V K+ PND DA  K +EC K 
Sbjct: 83  GDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPNDKDAKMKYQECSKI 142

Query: 129 VKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQ 188
           VK+  FE AIA  E  R SV DS+D +S+ +E +YSG ++E   +T+ F+K +M  +K+Q
Sbjct: 143 VKQKAFERAIAGDE-HRRSVVDSLDIESMTIEDEYSGPKLEDGKVTITFMKDLMQWYKDQ 201

Query: 189 KCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPS 248
           K LH++ A+QI++Q +E+L  L +LV+  + + +  TVCGD HGQFYDLLNIFELNGLPS
Sbjct: 202 KKLHRKCAYQILVQVKEVLCKLSTLVETTLKETEKITVCGDTHGQFYDLLNIFELNGLPS 261

Query: 249 EENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRS 308
           E NPY+FNGDFVDRGSFSVEVILTLF FK + P   +L RGNHE+ +MN+IYGFEGEV++
Sbjct: 262 ETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVKA 321

Query: 309 KLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLM 368
           K +    ELF+EVF  LPLA  +N KV ++HGGLFS DGV L DI+ I+R  +PP+ G M
Sbjct: 322 KYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSEDGVTLDDIRKIERNRQPPDSGPM 381

Query: 369 CELLWSDPQPLPGRGPSKRGVG----------------LSFVVRSHEVKDEGYEIEHDGK 412
           C+LLWSDPQP  GR  SKRGV                 L +++RSHEVK EGYE+ H G+
Sbjct: 382 CDLLWSDPQPQNGRSVSKRGVSCQFGPDVTKAFLEENQLDYIIRSHEVKAEGYEVAHGGR 441

Query: 413 LITVFSAPNYCDQV 426
            +TVFSAPNYCDQ+
Sbjct: 442 CVTVFSAPNYCDQM 455

May play a role in the regulation of RNA biogenesis and/or mitosis.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|P53041|PPP5_HUMAN Serine/threonine-protein phosphatase 5 OS=Homo sapiens GN=PPP5C PE=1 SV=1

 Score =  500 bits (1288), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 240/435 (55%), Positives = 317/435 (72%), Gaps = 17/435 (3%)

Query: 8   NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSA 67
           + ++ RAEELK  AN+ F+AK Y  AI  YSQAIELN  NA+YY NR+ A+ + E YG A
Sbjct: 22  DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYA 81

Query: 68  IQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127
           + DA++AIE+D +Y KGYYRR A+ +A+GKF+ AL+D++ V K+ P+D DA  K +EC K
Sbjct: 82  LGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 141

Query: 128 AVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKN 187
            VK+  FE AIA  E +R SV DS+D +S+ +E +YSG ++E   +T+ F+K++M  +K+
Sbjct: 142 IVKQKAFERAIAGDEHKR-SVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKD 200

Query: 188 QKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLP 247
           QK LH++ A+QI++Q +E+L  L +LV+  + + +  TVCGD HGQFYDLLNIFELNGLP
Sbjct: 201 QKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQFYDLLNIFELNGLP 260

Query: 248 SEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVR 307
           SE NPY+FNGDFVDRGSFSVEVILTLF FK + P   +L RGNHE+ +MN+IYGFEGEV+
Sbjct: 261 SETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVK 320

Query: 308 SKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGL 367
           +K +    ELF+EVF  LPLA  +N KV ++HGGLFS DGV L DI+ I+R  +PP+ G 
Sbjct: 321 AKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSEDGVTLDDIRKIERNRQPPDSGP 380

Query: 368 MCELLWSDPQPLPGRGPSKRGV----------------GLSFVVRSHEVKDEGYEIEHDG 411
           MC+LLWSDPQP  GR  SKRGV                 L +++RSHEVK EGYE+ H G
Sbjct: 381 MCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFLEENNLDYIIRSHEVKAEGYEVAHGG 440

Query: 412 KLITVFSAPNYCDQV 426
           + +TVFSAPNYCDQ+
Sbjct: 441 RCVTVFSAPNYCDQM 455

May play a role in the regulation of RNA biogenesis and/or mitosis. In vitro, dephosphorylates serine residues of skeletal muscle phosphorylase and histone H1.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|O43049|PPT1_SCHPO Serine/threonine-protein phosphatase T OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ppt1 PE=3 SV=2

 Score =  436 bits (1120), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 216/434 (49%), Positives = 294/434 (67%), Gaps = 21/434 (4%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           A ELK  AN+  +     QAIDLY++AIEL+S NA+ Y+NR+ AH K E+YG AI DASK
Sbjct: 5   ALELKNEANKFLKEGHIVQAIDLYTKAIELDSTNAILYSNRSLAHLKSEDYGLAINDASK 64

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
           AIE DP Y K Y+RR  A++A+ + KEA+ DF++   L+P+DP A +K++ECE+ VK+++
Sbjct: 65  AIECDPEYAKAYFRRATAHIAIFQPKEAVGDFRKALALAPSDPAARKKLRECEQLVKRIR 124

Query: 134 FEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHK 193
           F+EAI    +E  S   +I+ + +++   Y G  +E   IT +FV+ M + F   K L  
Sbjct: 125 FQEAIH--NTEPPSPLANINIEDMDIPSDYDGVILEKQ-ITKEFVEDMKERFCQGKKLPL 181

Query: 194 RYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPY 253
           ++A+ I+   +E+L   PSL+DI +   +   +CGD HGQ++DLLNIF+L+G PS  N Y
Sbjct: 182 KFAYSILRDLKELLEKTPSLIDIPVKGDETLVICGDTHGQYFDLLNIFKLHGPPSPTNKY 241

Query: 254 LFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSET 313
           LFNGDFVDRGS+S EV  TL+A+K + P A++++RGNHE+  MNK+YGFEGE RSK +E 
Sbjct: 242 LFNGDFVDRGSWSTEVAFTLYAYKLLYPDAVFINRGNHETDDMNKVYGFEGECRSKYNER 301

Query: 314 FVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFC--EPPEEGLMCEL 371
              +F+E F  LPL  +++    VVHGGLFS D V L  ++ IDRF   +P + GLM E+
Sbjct: 302 TFNIFSETFSLLPLGSLISDSYLVVHGGLFSDDNVTLDQLRNIDRFSKKQPGQSGLMMEM 361

Query: 372 LWSDPQPLPGRGPSKRGVGLSF----------------VVRSHEVKDEGYEIEHDGKLIT 415
           LW+DPQP PGRGPSKRGVGL F                V+RSHEV+D+GYE+EHDG  IT
Sbjct: 362 LWTDPQPAPGRGPSKRGVGLQFGPDVSKRFCEANGLKAVIRSHEVRDQGYEVEHDGYCIT 421

Query: 416 VFSAPNYCDQVTKL 429
           VFSAPNYCD    L
Sbjct: 422 VFSAPNYCDSTGNL 435

Protein phosphatase that specifically binds to and dephosphorylates the molecular chaperone Hsp90. Dephosphorylation positively regulates the Hsp90 chaperone machinery.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|P53043|PPT1_YEAST Serine/threonine-protein phosphatase T OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PPT1 PE=1 SV=1

 Score =  336 bits (862), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 183/459 (39%), Positives = 274/459 (59%), Gaps = 44/459 (9%)

Query: 12  SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDA 71
           ++A E K   N   + K + +AI+ Y++AI+L+S  ++Y++NRAFAH K++ + SA+ D 
Sbjct: 10  AKALERKNEGNVFVKEKHFLKAIEKYTEAIDLDSTQSIYFSNRAFAHFKVDNFQSALNDC 69

Query: 72  SKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131
            +AI++DP+  K Y+RR  + +A+ +FK+A KD   + K  PNDP A + +  C++ +++
Sbjct: 70  DEAIKLDPKNIKAYHRRALSCMALLEFKKARKDLNVLLKAKPNDPAATKALLTCDRFIRE 129

Query: 132 LKFEEAIAVPESERH-------------SVADSIDYQSIEVEPQ--------YSGARIEG 170
            +F +AI   E+E               + AD  +Y+  ++E +        + GA+I+ 
Sbjct: 130 ERFRKAIGGAENEAKISLCQTLNLSSFDANADLANYEGPKLEFEQLYDDKNAFKGAKIKN 189

Query: 171 DVITLDFVKKMMDD-FKNQKCLHKRYAFQIVLQTREMLRALPSLVDID---IPDGKHFTV 226
             ++ +F+ KM++D F   K L K+Y   I+     + R  PS+V+++    PD K  +V
Sbjct: 190 --MSQEFISKMVNDLFLKGKYLPKKYVAAIISHADTLFRQEPSMVELENNSTPDVK-ISV 246

Query: 227 CGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYL 286
           CGD HGQFYD+LN+F   G    ++ YLFNGDFVDRGS+S EV L  +  K + P+  +L
Sbjct: 247 CGDTHGQFYDVLNLFRKFGKVGPKHTYLFNGDFVDRGSWSCEVALLFYCLKILHPNNFFL 306

Query: 287 SRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVD 346
           +RGNHES +MNKIYGFE E + K S+    +FA+ F  LPLA ++N    V+HGGL S  
Sbjct: 307 NRGNHESDNMNKIYGFEDECKYKYSQRIFNMFAQSFESLPLATLINNDYLVMHGGLPSDP 366

Query: 347 GVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF------------- 393
              LSD K IDRF +PP +G   ELLW+DPQ   G GPS+RG+G +F             
Sbjct: 367 SATLSDFKNIDRFAQPPRDGAFMELLWADPQEANGMGPSQRGLGHAFGPDITDRFLRNNK 426

Query: 394 ---VVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQVTKL 429
              + RSHE++  G + E  GKL+TVFSAPNYCD    L
Sbjct: 427 LRKIFRSHELRMGGVQFEQKGKLMTVFSAPNYCDSQGNL 465

Protein phosphatase that specifically binds to and dephosphorylates the molecular chaperone Hsp90 (HSC82 and HSP82). Dephosphorylation positively regulates the Hsp90 chaperone machinery.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q05681|PP2B_NEUCR Serine/threonine-protein phosphatase 2B catalytic subunit OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cna-1 PE=2 SV=2

 Score =  200 bits (509), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 108/270 (40%), Positives = 155/270 (57%), Gaps = 36/270 (13%)

Query: 185 FKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELN 244
           F  +  L +  A  I+ +  ++LRA P+L+++D P     TVCGDVHGQ+YDL+ +FE+ 
Sbjct: 88  FYREGRLTEEQALWIIREGTKLLRAEPNLLEMDAP----ITVCGDVHGQYYDLMKLFEVG 143

Query: 245 GLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEG 304
           G P+E   YLF GD+VDRG FS+E +L L+A K   P  ++L RGNHE + +   + F+ 
Sbjct: 144 GDPAETR-YLFLGDYVDRGYFSIECVLYLWALKIHYPKTLWLLRGNHECRHLTDYFTFKL 202

Query: 305 EVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPE 364
           E + K SE   E   E FCCLPLA V+N++   +HGGL S +   L DI+ IDRF EPP 
Sbjct: 203 ECKHKYSEAIYEACMESFCCLPLAAVMNKQFLCIHGGL-SPELHTLDDIRNIDRFREPPT 261

Query: 365 EGLMCELLWSDPQPLPGRGPSK--------RGVGLSF----------------VVRSHEV 400
           +GLMC++LW+DP    G+  +         RG    F                ++R+HE 
Sbjct: 262 QGLMCDILWADPLEDFGQEKTTDFFVHNHVRGCSYFFSYSAACHFLEKNNLLSIIRAHEA 321

Query: 401 KDEGYEIEHDGK------LITVFSAPNYCD 424
           +D GY +    +      ++T+FSAPNY D
Sbjct: 322 QDAGYRMYRKTRTTGFPSVMTIFSAPNYLD 351

Calcium-dependent, calmodulin-stimulated protein phosphatase. This subunit may have a role in the calmodulin activation of calcineurin.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q4WUR1|PP2B_ASPFU Serine/threonine-protein phosphatase 2B catalytic subunit OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cnaA PE=3 SV=2

 Score =  199 bits (505), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 112/280 (40%), Positives = 160/280 (57%), Gaps = 39/280 (13%)

Query: 175 LDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQF 234
           L F+K+    F  +  L +  A  I+    ++LR+ P+L+++D P     TVCGDVHGQ+
Sbjct: 41  LQFLKQ---HFYREGRLTEEQALWIIHAGTQILRSEPNLLEMDAP----ITVCGDVHGQY 93

Query: 235 YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK 294
           YDL+ +FE+ G PSE   YLF GD+VDRG FS+E +L L+A K   P++++L RGNHE +
Sbjct: 94  YDLMKLFEVGGDPSETR-YLFLGDYVDRGYFSIECVLYLWALKIWYPNSLWLLRGNHECR 152

Query: 295 SMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIK 354
            +   + F+ E + K SE   E   E FC LPLA V+N++   +HGGL S +   L DIK
Sbjct: 153 HLTDYFTFKLECKHKYSERIYEACIESFCALPLAAVMNKQFLCIHGGL-SPELHTLEDIK 211

Query: 355 TIDRFCEPPEEGLMCELLWSDPQPLPGRGP--------SKRGVGLSF------------- 393
           +IDRF EPP  GLMC++LW+DP    G+          S RG    F             
Sbjct: 212 SIDRFREPPTHGLMCDILWADPLEEFGQEKTGDYFVHNSVRGCSYFFSYPAACAFLEKNN 271

Query: 394 ---VVRSHEVKDEGYEIEHDGK------LITVFSAPNYCD 424
              ++R+HE +D GY +    +      ++T+FSAPNY D
Sbjct: 272 LLSIIRAHEAQDAGYRMYRKTRTTGFPSVMTIFSAPNYLD 311

Calcium-dependent, calmodulin-stimulated protein phosphatase. This subunit may have a role in the calmodulin activation of calcineurin.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|P48482|PP12_ARATH Serine/threonine-protein phosphatase PP1 isozyme 2 OS=Arabidopsis thaliana GN=TOPP2 PE=2 SV=1

 Score =  196 bits (499), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 107/276 (38%), Positives = 160/276 (57%), Gaps = 29/276 (10%)

Query: 171 DVITLDFVKKMMDDFKN------QKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHF 224
           D   LD + + + D++N      Q  L++    Q+ + +RE+    P+L++++ P     
Sbjct: 10  DPAALDDIIRRLLDYRNPKPGTKQAMLNESEIRQLCIVSREIFLQQPNLLELEAP----I 65

Query: 225 TVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAI 284
            +CGD+HGQ+ DLL +FE  G P   N YLF GD+VDRG  S+E I  L A+K   P   
Sbjct: 66  KICGDIHGQYSDLLRLFEYGGFPPTAN-YLFLGDYVDRGKQSLETICLLLAYKIKYPENF 124

Query: 285 YLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFS 344
           +L RGNHE  S+N+IYGF  E + + S    ++F + F CLP+A V++ K+  +HGGL S
Sbjct: 125 FLLRGNHECASINRIYGFYDECKRRFSVRLWKVFTDSFNCLPVAAVIDDKILCMHGGL-S 183

Query: 345 VDGVKLSDIKTIDRFCEPPEEGLMCELLWSDP-QPLPGRGPSKRGVGLSF---------- 393
            D   +  IK I R  + P+ GL+C+LLWSDP + + G G + RGV  +F          
Sbjct: 184 PDLTNVEQIKNIKRPTDVPDSGLLCDLLWSDPSKDVKGWGMNDRGVSYTFGPDKVAEFLI 243

Query: 394 ------VVRSHEVKDEGYEIEHDGKLITVFSAPNYC 423
                 + R+H+V ++GYE   D +L+T+FSAPNYC
Sbjct: 244 KNDMDLICRAHQVVEDGYEFFADRQLVTIFSAPNYC 279

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	429
350536163	485	serine/threonine-protein phosphatase 5 [	0.993	0.878	0.861	0.0
343488864	485	serine/threonine protein phosphatase 5 [	0.993	0.878	0.864	0.0
355329952	485	serine/threonine-protein phosphatase 5 [	0.993	0.878	0.859	0.0
224128732	488	predicted protein [Populus trichocarpa]	0.993	0.872	0.856	0.0
255558752	476	protein phosphatase-5, putative [Ricinus	0.962	0.867	0.857	0.0
18406066	484	serine/threonine-protein phosphatase 5 [	0.986	0.873	0.834	0.0
449444753	485	PREDICTED: serine/threonine-protein phos	0.993	0.878	0.823	0.0
357127077	483	PREDICTED: serine/threonine-protein phos	0.983	0.873	0.787	0.0
326523823	483	predicted protein [Hordeum vulgare subsp	0.983	0.873	0.783	0.0
413944781	471	putative serine/threonine protein phosph	0.981	0.893	0.784	0.0

>gi|350536163|ref|NP_001234232.1| serine/threonine-protein phosphatase 5 [Solanum lycopersicum] gi|24954813|gb|AAN64317.1| type 5 serine/threonine phosphatase 55 kDa isoform [Solanum lycopersicum] gi|28141084|gb|AAO26214.1| type 5 protein serine/threonine phosphatase 55 kDa isoform [Solanum lycopersicum]

 Score =  797 bits (2058), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/442 (86%), Positives = 408/442 (92%), Gaps = 16/442 (3%)

Query: 1   MPNMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK 60
           MP ME ENS+ SRAEELK LANEAF+  KYSQAIDLY+QAIELN +NAVYYANRAFAHTK
Sbjct: 1   MPGMEAENSNASRAEELKQLANEAFKGHKYSQAIDLYTQAIELNGENAVYYANRAFAHTK 60

Query: 61  LEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120
           LEEYGSAIQD ++AIEIDPRY KGYYRRGAAYLAMGKFK+ALKDFQQVKKL PNDPDA +
Sbjct: 61  LEEYGSAIQDGTRAIEIDPRYSKGYYRRGAAYLAMGKFKDALKDFQQVKKLCPNDPDATK 120

Query: 121 KVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKK 180
           K+KECEKAV KLKFEEAI+VPES+R SVADSIDY+S+EVEPQY+GARIEGDV+TLDFVKK
Sbjct: 121 KLKECEKAVMKLKFEEAISVPESQRRSVADSIDYRSVEVEPQYAGARIEGDVVTLDFVKK 180

Query: 181 MMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNI 240
           M+DDFKNQK LHKRYA+QIVLQTREMLRALPSLVDI +P+GKHFTVCGDVHGQFYDLLNI
Sbjct: 181 MLDDFKNQKNLHKRYAYQIVLQTREMLRALPSLVDIVVPEGKHFTVCGDVHGQFYDLLNI 240

Query: 241 FELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIY 300
           FELNGLPSE+NPYLFNGDFVDRGSFS+EVILTLFAFKCMCPSAI+L+RGNHESKSMNKIY
Sbjct: 241 FELNGLPSEDNPYLFNGDFVDRGSFSLEVILTLFAFKCMCPSAIHLARGNHESKSMNKIY 300

Query: 301 GFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFC 360
           GFEGEVRSKLSE FVELFAEVFCCLPLAHV+N+KVFVVHGGLFSVDGVKLSDI+ IDRFC
Sbjct: 301 GFEGEVRSKLSEIFVELFAEVFCCLPLAHVINEKVFVVHGGLFSVDGVKLSDIRAIDRFC 360

Query: 361 EPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF----------------VVRSHEVKDEG 404
           EPPEEGLMCELLWSDPQP PGRGPSKRGVGLSF                VVRSHEVKDEG
Sbjct: 361 EPPEEGLMCELLWSDPQPQPGRGPSKRGVGLSFGGDVTKRFLQENNLDLVVRSHEVKDEG 420

Query: 405 YEIEHDGKLITVFSAPNYCDQV 426
           YEIEHDGKLITVFSAPNYCDQ+
Sbjct: 421 YEIEHDGKLITVFSAPNYCDQM 442

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343488864|gb|AEM45799.1| serine/threonine protein phosphatase 5 [Solanum torvum]

 Score =  796 bits (2055), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/442 (86%), Positives = 408/442 (92%), Gaps = 16/442 (3%)

Query: 1   MPNMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK 60
           MP ME ENS+ SRA ELK LANEAF+A+KYSQAIDLY+QA+ELN +NAVYYANRAFAHTK
Sbjct: 1   MPGMEAENSNTSRAGELKQLANEAFKARKYSQAIDLYTQALELNGENAVYYANRAFAHTK 60

Query: 61  LEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120
           LEEYGSAIQD ++AIEIDPRY KGYYRRGAAYLAMGKFK+ALKDFQQVKKL PNDPDA +
Sbjct: 61  LEEYGSAIQDGTRAIEIDPRYSKGYYRRGAAYLAMGKFKDALKDFQQVKKLCPNDPDATK 120

Query: 121 KVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKK 180
           K+KECEKAV KLKFEEAI+VPES+R SVADSIDY SIEVEPQY+GARIEGDV+TLDFVKK
Sbjct: 121 KLKECEKAVMKLKFEEAISVPESQRCSVADSIDYHSIEVEPQYAGARIEGDVVTLDFVKK 180

Query: 181 MMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNI 240
           M+DDFKNQK LHKRYA+QIVLQTREMLRALPSLVDI +P+GKHFTVCGDVHGQFYDLLNI
Sbjct: 181 MLDDFKNQKNLHKRYAYQIVLQTREMLRALPSLVDIVVPEGKHFTVCGDVHGQFYDLLNI 240

Query: 241 FELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIY 300
           FELNGLPSE+NPYLFNGDFVDRGSFS+EVILTLFAFKCMCPSAI+L+RGNHESKSMNKIY
Sbjct: 241 FELNGLPSEDNPYLFNGDFVDRGSFSLEVILTLFAFKCMCPSAIHLARGNHESKSMNKIY 300

Query: 301 GFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFC 360
           GFEGEVRSKLSE FVELFAEVFCCLPLAHV+N+KVFVVHGGLFSVDGVKLSDIK IDRFC
Sbjct: 301 GFEGEVRSKLSEIFVELFAEVFCCLPLAHVINEKVFVVHGGLFSVDGVKLSDIKAIDRFC 360

Query: 361 EPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF----------------VVRSHEVKDEG 404
           EPPEEGLMCELLWSDPQP PGRGPSKRGVGLSF                VVRSHEVKDEG
Sbjct: 361 EPPEEGLMCELLWSDPQPQPGRGPSKRGVGLSFGGDVTKRFLQENNLDLVVRSHEVKDEG 420

Query: 405 YEIEHDGKLITVFSAPNYCDQV 426
           YEIEHDGKLITVFSAPNYCDQ+
Sbjct: 421 YEIEHDGKLITVFSAPNYCDQM 442

Source: Solanum torvum

Species: Solanum torvum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|355329952|dbj|BAL14275.1| serine/threonine-protein phosphatase 5 [Nicotiana tabacum]

 Score =  795 bits (2054), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/442 (85%), Positives = 407/442 (92%), Gaps = 16/442 (3%)

Query: 1   MPNMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK 60
           MP METE S+ SRAEELK LANEAF+  KYSQAIDLY+QAIELNS+NAVY+ANRAFAHTK
Sbjct: 1   MPTMETEKSNTSRAEELKQLANEAFKGHKYSQAIDLYTQAIELNSENAVYWANRAFAHTK 60

Query: 61  LEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120
           LEEYGSAIQDA+KAIEID +Y KGYYRRGAAYLAMGKFK+ALKDFQQVKKL PNDPDA +
Sbjct: 61  LEEYGSAIQDATKAIEIDSKYSKGYYRRGAAYLAMGKFKDALKDFQQVKKLCPNDPDATK 120

Query: 121 KVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKK 180
           K+KECEKAV KLKFEEAI+VPES+R SVAD IDY ++EVEPQY+GARIEGDV+TLDFVKK
Sbjct: 121 KLKECEKAVMKLKFEEAISVPESQRRSVADFIDYHTVEVEPQYTGARIEGDVVTLDFVKK 180

Query: 181 MMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNI 240
           M+DDFKNQK LHKRYA+Q+VLQTREMLRALPSLVDI +P+GKHFTVCGDVHGQFYDLLNI
Sbjct: 181 MLDDFKNQKNLHKRYAYQVVLQTREMLRALPSLVDIVVPEGKHFTVCGDVHGQFYDLLNI 240

Query: 241 FELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIY 300
           FELNG PSE+NPYLFNGDFVDRGSFS+EVILTLFAFKCMCPSAIYL+RGNHESKSMNKIY
Sbjct: 241 FELNGFPSEDNPYLFNGDFVDRGSFSLEVILTLFAFKCMCPSAIYLARGNHESKSMNKIY 300

Query: 301 GFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFC 360
           GFEGEVRSKLSETFVELFAEVFCCLPLAHV+N KVFVVHGGLFSVDGVKLSDI+TIDRFC
Sbjct: 301 GFEGEVRSKLSETFVELFAEVFCCLPLAHVINGKVFVVHGGLFSVDGVKLSDIRTIDRFC 360

Query: 361 EPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF----------------VVRSHEVKDEG 404
           EPPEEGLMCELLWSDPQP PGRGPSKRGVGLSF                VVRSHEVKDEG
Sbjct: 361 EPPEEGLMCELLWSDPQPQPGRGPSKRGVGLSFGADITKRFLQENNLDLVVRSHEVKDEG 420

Query: 405 YEIEHDGKLITVFSAPNYCDQV 426
           YEIEHDGKLITVFSAPNYCDQ+
Sbjct: 421 YEIEHDGKLITVFSAPNYCDQM 442

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128732|ref|XP_002320408.1| predicted protein [Populus trichocarpa] gi|222861181|gb|EEE98723.1| predicted protein [Populus trichocarpa]

 Score =  791 bits (2044), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/445 (85%), Positives = 408/445 (91%), Gaps = 19/445 (4%)

Query: 1   MPNMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK 60
           MPNMET+NS+VSRAEE+K LANEAF+A KY QAIDLYSQAIELN  NAVY+ANRAFAH+K
Sbjct: 1   MPNMETQNSNVSRAEEIKVLANEAFKAHKYGQAIDLYSQAIELNGDNAVYWANRAFAHSK 60

Query: 61  LEEYGSAIQDASKAIEIDPRYPKGYY---RRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117
           LEEYGSAIQDASKA EIDP+Y K  +    RGAAYLAMGKFK+ALKDFQQVKK+ PNDPD
Sbjct: 61  LEEYGSAIQDASKATEIDPKYSKAKHICLERGAAYLAMGKFKDALKDFQQVKKICPNDPD 120

Query: 118 AAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDF 177
           A++K+KECEKAV KLKFEEAIAVPES+R SVADSID+ SI+VEPQYSGARIEGD++TLDF
Sbjct: 121 ASKKLKECEKAVMKLKFEEAIAVPESQRRSVADSIDFHSIDVEPQYSGARIEGDIVTLDF 180

Query: 178 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDL 237
           VKKMMDDFKNQKCLHKRYAFQ+VLQTRE+L+ALPSLVDI++P+GKHFTVCGDVHGQFYDL
Sbjct: 181 VKKMMDDFKNQKCLHKRYAFQMVLQTREILQALPSLVDINVPEGKHFTVCGDVHGQFYDL 240

Query: 238 LNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMN 297
           LNIFELNG PSEENPYLFNGDFVDRGSFS+EVILTLFAFKCMCPSAIYLSRGNHESKSMN
Sbjct: 241 LNIFELNGFPSEENPYLFNGDFVDRGSFSLEVILTLFAFKCMCPSAIYLSRGNHESKSMN 300

Query: 298 KIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTID 357
           KIYGFEGEVRSKLSETFVELFAEVFCCLPLAHV+N KVFVVHGGLFSVDGVKLSDIK ID
Sbjct: 301 KIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVINGKVFVVHGGLFSVDGVKLSDIKAID 360

Query: 358 RFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF----------------VVRSHEVK 401
           RFCEPPEEGLMCELLWSDPQP PGRGPSKRGVGLSF                VVRSHEVK
Sbjct: 361 RFCEPPEEGLMCELLWSDPQPFPGRGPSKRGVGLSFGKDVTRRFLQDNNLDLVVRSHEVK 420

Query: 402 DEGYEIEHDGKLITVFSAPNYCDQV 426
           DEGYEIEHDGKLITVFSAPNYCDQ+
Sbjct: 421 DEGYEIEHDGKLITVFSAPNYCDQM 445

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558752|ref|XP_002520400.1| protein phosphatase-5, putative [Ricinus communis] gi|223540447|gb|EEF42016.1| protein phosphatase-5, putative [Ricinus communis]

 Score =  775 bits (2000), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/429 (85%), Positives = 394/429 (91%), Gaps = 16/429 (3%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           AE++K LANEAF+A KY QAIDLY+QAI+LN QNAVY+ANRAFAHTKLEEYGSAIQDA+ 
Sbjct: 5   AEKIKVLANEAFKAHKYGQAIDLYTQAIKLNGQNAVYWANRAFAHTKLEEYGSAIQDATM 64

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
           AIEIDP+Y KGYYRRGAAYLAMGKFKEALKDFQQVKK+ PNDPDA +K+KECEKAV KLK
Sbjct: 65  AIEIDPKYSKGYYRRGAAYLAMGKFKEALKDFQQVKKICPNDPDATKKLKECEKAVMKLK 124

Query: 134 FEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHK 193
           FEEAIA PESER SVADSID+ SI+VEPQYSGARIEGD +TLDFVK MMDDFK QKCLHK
Sbjct: 125 FEEAIAAPESERRSVADSIDFHSIDVEPQYSGARIEGDTVTLDFVKNMMDDFKKQKCLHK 184

Query: 194 RYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPY 253
           RYAFQIVL+TR MLR LPSLVDI++PDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPY
Sbjct: 185 RYAFQIVLETRNMLRTLPSLVDINVPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPY 244

Query: 254 LFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSET 313
           LFNGDFVDRGSFS+EVILTLFAFKCMCP+A+YLSRGNHESKSMNKIYGFEGEVRSKLS+T
Sbjct: 245 LFNGDFVDRGSFSLEVILTLFAFKCMCPTAMYLSRGNHESKSMNKIYGFEGEVRSKLSDT 304

Query: 314 FVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLW 373
           FVELFAEVFCCLPLAHV+N+KVFVVHGGLFSVDGVKLS+I+ IDRFCEPPEEGLMCELLW
Sbjct: 305 FVELFAEVFCCLPLAHVINEKVFVVHGGLFSVDGVKLSEIRAIDRFCEPPEEGLMCELLW 364

Query: 374 SDPQPLPGRGPSKRGVGLSF----------------VVRSHEVKDEGYEIEHDGKLITVF 417
           SDPQP PGRGPSKRGVGLSF                VVRSHEVKDEGYEIEHDGKLITVF
Sbjct: 365 SDPQPFPGRGPSKRGVGLSFGADVTKKFLQENKLDLVVRSHEVKDEGYEIEHDGKLITVF 424

Query: 418 SAPNYCDQV 426
           SAPNYCDQ+
Sbjct: 425 SAPNYCDQM 433

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18406066|ref|NP_565985.1| serine/threonine-protein phosphatase 5 [Arabidopsis thaliana] gi|16930441|gb|AAL31906.1|AF419574_1 At2g42810/F7D19.19 [Arabidopsis thaliana] gi|20197966|gb|AAD21727.2| putative phosphoprotein phosphatase [Arabidopsis thaliana] gi|33589766|gb|AAQ22649.1| At2g42810/F7D19.19 [Arabidopsis thaliana] gi|330255077|gb|AEC10171.1| serine/threonine-protein phosphatase 5 [Arabidopsis thaliana]

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/441 (83%), Positives = 398/441 (90%), Gaps = 18/441 (4%)

Query: 4   MET--ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL 61
           MET  ENS VSRAEE K+ ANEAF+  KYS AIDLY++AIELNS NAVY+ANRAFAHTKL
Sbjct: 1   METKNENSDVSRAEEFKSQANEAFKGHKYSSAIDLYTKAIELNSNNAVYWANRAFAHTKL 60

Query: 62  EEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121
           EEYGSAIQDASKAIE+D RY KGYYRRGAAYLAMGKFK+ALKDFQQVK+LSPNDPDA +K
Sbjct: 61  EEYGSAIQDASKAIEVDSRYSKGYYRRGAAYLAMGKFKDALKDFQQVKRLSPNDPDATRK 120

Query: 122 VKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKM 181
           +KECEKAV KLKFEEAI+VP SER SVA+SID+ +IEVEPQYSGARIEG+ +TLDFVK M
Sbjct: 121 LKECEKAVMKLKFEEAISVPVSERRSVAESIDFHTIEVEPQYSGARIEGEEVTLDFVKTM 180

Query: 182 MDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIF 241
           M+DFKNQK LHKRYA+QIVLQTR++L ALPSLVDI +P GKH TVCGDVHGQFYDLLNIF
Sbjct: 181 MEDFKNQKTLHKRYAYQIVLQTRQILLALPSLVDISVPHGKHITVCGDVHGQFYDLLNIF 240

Query: 242 ELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYG 301
           ELNGLPSEENPYLFNGDFVDRGSFSVE+ILTLFAFKCMCPS+IYL+RGNHESKSMNKIYG
Sbjct: 241 ELNGLPSEENPYLFNGDFVDRGSFSVEIILTLFAFKCMCPSSIYLARGNHESKSMNKIYG 300

Query: 302 FEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCE 361
           FEGEVRSKLSE FV+LFAEVFC LPLAHV+N KVFVVHGGLFSVDGVKLSDI+ IDRFCE
Sbjct: 301 FEGEVRSKLSEKFVDLFAEVFCYLPLAHVINGKVFVVHGGLFSVDGVKLSDIRAIDRFCE 360

Query: 362 PPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF----------------VVRSHEVKDEGY 405
           PPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF                +VRSHEVKDEGY
Sbjct: 361 PPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGGDVTKRFLQDNNLDLLVRSHEVKDEGY 420

Query: 406 EIEHDGKLITVFSAPNYCDQV 426
           E+EHDGKLITVFSAPNYCDQ+
Sbjct: 421 EVEHDGKLITVFSAPNYCDQM 441

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444753|ref|XP_004140138.1| PREDICTED: serine/threonine-protein phosphatase 5-like [Cucumis sativus] gi|449481084|ref|XP_004156077.1| PREDICTED: serine/threonine-protein phosphatase 5-like [Cucumis sativus]

 Score =  763 bits (1971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/442 (82%), Positives = 401/442 (90%), Gaps = 16/442 (3%)

Query: 1   MPNMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK 60
           MP ME + +   RAEELK  ANEAF+A KY+QAIDLY+QAIELN QNAVY+ANRAFAHTK
Sbjct: 1   MPVMEADKTDTIRAEELKFQANEAFKAHKYAQAIDLYTQAIELNGQNAVYWANRAFAHTK 60

Query: 61  LEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120
           LEEYGSAIQDASKAIEIDP+Y KGYYRRGAA+LAMGK KEALKDFQQ+KK+ PNDPDAA+
Sbjct: 61  LEEYGSAIQDASKAIEIDPKYSKGYYRRGAAFLAMGKLKEALKDFQQLKKICPNDPDAAK 120

Query: 121 KVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKK 180
           K+KECEKAV KLKFEEAI+VPESE+ SVADSID+  I+VEP+Y+GA+IEGDV+TLDFVKK
Sbjct: 121 KLKECEKAVMKLKFEEAISVPESEKRSVADSIDFHLIDVEPKYTGAKIEGDVVTLDFVKK 180

Query: 181 MMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNI 240
           M+DDFKNQK LHKRYAFQIVLQ RE++RALPSLVDI+IP+G+H TVCGDVHGQFYDLLNI
Sbjct: 181 MIDDFKNQKSLHKRYAFQIVLQVREIMRALPSLVDINIPEGRHLTVCGDVHGQFYDLLNI 240

Query: 241 FELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIY 300
           FELNGLPS+ENPYLFNGDFVDRGSFSVEVILTLFAFKCM PSA++LSRGNHESKSMNKIY
Sbjct: 241 FELNGLPSDENPYLFNGDFVDRGSFSVEVILTLFAFKCMSPSAMHLSRGNHESKSMNKIY 300

Query: 301 GFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFC 360
           GFEGEVRSKL+ETFVELFAEVFC LPLA+VLN+KVFV HGGLFSVDGVKLSDI+ IDRFC
Sbjct: 301 GFEGEVRSKLNETFVELFAEVFCSLPLAYVLNEKVFVAHGGLFSVDGVKLSDIRAIDRFC 360

Query: 361 EPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF----------------VVRSHEVKDEG 404
           EPPEEGLMCE+LWSDPQP PGRGPSKRGVGL+F                +VRSHEVKDEG
Sbjct: 361 EPPEEGLMCEILWSDPQPNPGRGPSKRGVGLAFGADVTKRFLQENNLDLIVRSHEVKDEG 420

Query: 405 YEIEHDGKLITVFSAPNYCDQV 426
           YEIEHDGKLITVFSAPNYCDQ+
Sbjct: 421 YEIEHDGKLITVFSAPNYCDQM 442

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357127077|ref|XP_003565212.1| PREDICTED: serine/threonine-protein phosphatase 5-like [Brachypodium distachyon]

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/438 (78%), Positives = 398/438 (90%), Gaps = 16/438 (3%)

Query: 5   ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEY 64
           ++ N++V +AEELK  AN+AF+A K+SQA+DLY QAI+LNS NAVY+ANRAFAHTKLEEY
Sbjct: 3   DSSNANVQKAEELKLKANDAFKANKFSQAVDLYDQAIDLNSSNAVYWANRAFAHTKLEEY 62

Query: 65  GSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE 124
           GSA+QDA+KAIEIDPRY KGYYRRGAAYLAMGKFKEALKDFQQVK++ PNDPDA +K+KE
Sbjct: 63  GSAVQDATKAIEIDPRYSKGYYRRGAAYLAMGKFKEALKDFQQVKRICPNDPDATRKLKE 122

Query: 125 CEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDD 184
           CEKAV+K++FEEAI+V ++ER S+ADS+DY  IEVEPQY+GARI+GD ITLDF+K+M+D+
Sbjct: 123 CEKAVQKIRFEEAISVGDTERRSIADSLDYHIIEVEPQYTGARIDGDTITLDFIKQMLDN 182

Query: 185 FKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELN 244
           FK QKC+HKRYAFQIVLQ R++LR++PSLVD+++P+G HFTVCGDVHGQ++DLLNIFELN
Sbjct: 183 FKQQKCIHKRYAFQIVLQARDLLRSVPSLVDVNVPNGSHFTVCGDVHGQYFDLLNIFELN 242

Query: 245 GLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEG 304
           GLPSEENPYLFNGDFVDRGSFS+EVILTLFAFKC+ P+ +YL+RGNHESKSMNKIYGFEG
Sbjct: 243 GLPSEENPYLFNGDFVDRGSFSLEVILTLFAFKCLYPTGMYLARGNHESKSMNKIYGFEG 302

Query: 305 EVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPE 364
           EV+SKLS+TFVELFAEVFCCLPLAHV+N+KVFVVHGGLFSVDGVKLSDIK IDRFCEPPE
Sbjct: 303 EVKSKLSDTFVELFAEVFCCLPLAHVINKKVFVVHGGLFSVDGVKLSDIKAIDRFCEPPE 362

Query: 365 EGLMCELLWSDPQPLPGRGPSKRGVGLSF----------------VVRSHEVKDEGYEIE 408
           EGLMCE+LWSDPQP  GRGPSKRGVGLSF                VVRSHEVKDEGYEI 
Sbjct: 363 EGLMCEILWSDPQPQLGRGPSKRGVGLSFGADVTKRFLEDNNLDLVVRSHEVKDEGYEIV 422

Query: 409 HDGKLITVFSAPNYCDQV 426
           HDGKLITVFSAPNYCDQ+
Sbjct: 423 HDGKLITVFSAPNYCDQM 440

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326523823|dbj|BAJ93082.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/438 (78%), Positives = 396/438 (90%), Gaps = 16/438 (3%)

Query: 5   ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEY 64
           ++ NS+V +AEELK  AN+AF+A K+SQA++LY QAI+LN  NAVY+ANRAFAHTKLEEY
Sbjct: 3   DSSNSNVQKAEELKLRANDAFKANKFSQAVELYDQAIDLNGSNAVYWANRAFAHTKLEEY 62

Query: 65  GSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE 124
           GSA+QDA+KAIEIDP+Y KGYYRRGAAYLAMGKFKEALKDFQQVK++ PNDPDA +K+KE
Sbjct: 63  GSAVQDATKAIEIDPKYSKGYYRRGAAYLAMGKFKEALKDFQQVKRICPNDPDATRKLKE 122

Query: 125 CEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDD 184
           CEKAV+K++FEEAI+V ++ER S+ADS+DY  IEVEPQY+GARI+GD ITLDFVK+M++D
Sbjct: 123 CEKAVQKIRFEEAISVGDTERRSIADSLDYHIIEVEPQYTGARIDGDTITLDFVKQMLED 182

Query: 185 FKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELN 244
           FK QKC+HKRYA QIVLQ R++LRA+PSLVD+++P+G HFTVCGDVHGQ++DLLNIFELN
Sbjct: 183 FKKQKCIHKRYALQIVLQARDLLRAVPSLVDVNVPNGCHFTVCGDVHGQYFDLLNIFELN 242

Query: 245 GLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEG 304
           GLPSE+NPYLFNGDFVDRGSFS+EVILTLFAFKC+ P+ +YL+RGNHESKSMNKIYGFEG
Sbjct: 243 GLPSEDNPYLFNGDFVDRGSFSLEVILTLFAFKCLYPTGMYLARGNHESKSMNKIYGFEG 302

Query: 305 EVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPE 364
           EV+SKLS+TFVELFAEVFCCLPLAHV+N+KVFVVHGGLFSVDGVKLSDIK IDRFCEPPE
Sbjct: 303 EVKSKLSDTFVELFAEVFCCLPLAHVINKKVFVVHGGLFSVDGVKLSDIKAIDRFCEPPE 362

Query: 365 EGLMCELLWSDPQPLPGRGPSKRGVGLSF----------------VVRSHEVKDEGYEIE 408
           EGLMCE+LWSDPQP PGRGPSKRGVGLSF                VVRSHEVKDEGYE  
Sbjct: 363 EGLMCEILWSDPQPQPGRGPSKRGVGLSFGGDVTKRFLEDNNLDLVVRSHEVKDEGYETM 422

Query: 409 HDGKLITVFSAPNYCDQV 426
           HDGKLITVFSAPNYCDQ+
Sbjct: 423 HDGKLITVFSAPNYCDQM 440

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413944781|gb|AFW77430.1| putative serine/threonine protein phosphatase superfamily protein [Zea mays]

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/437 (78%), Positives = 387/437 (88%), Gaps = 16/437 (3%)

Query: 6   TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYG 65
           T NS V RAEE K  AN+AF+A K+SQAI+LYSQAIELNS NAVY+ANRAFAHTKLEEYG
Sbjct: 4   TANSDVQRAEEFKLKANDAFKANKFSQAIELYSQAIELNSSNAVYWANRAFAHTKLEEYG 63

Query: 66  SAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125
           SA+QDA+KAIEID RY KGYYRRGAAYLAMGKFKEALKDFQQVKK+ PNDPDA +K+KEC
Sbjct: 64  SAVQDATKAIEIDSRYSKGYYRRGAAYLAMGKFKEALKDFQQVKKICPNDPDATRKLKEC 123

Query: 126 EKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDF 185
           EKAV+K++FEEAI+  + ER SVADSIDY  IEVEP Y+G RI+G+ IT++FVK M+D+F
Sbjct: 124 EKAVQKIRFEEAISAGDDERRSVADSIDYHIIEVEPHYAGPRIDGEEITIEFVKAMLDEF 183

Query: 186 KNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNG 245
           K QKC+HKRYA+QIVL+T ++LR++PSLVD+D+P+G HFTVCGDVHGQ++DLLNIF+LNG
Sbjct: 184 KKQKCIHKRYAYQIVLKTLDLLRSMPSLVDVDVPNGGHFTVCGDVHGQYFDLLNIFDLNG 243

Query: 246 LPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGE 305
           LPSEENPYLFNGDFVDRGSFSVEVILTLFAFKC+ P A+YL+RGNHESKSMNKIYGFEGE
Sbjct: 244 LPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCLYPKAMYLARGNHESKSMNKIYGFEGE 303

Query: 306 VRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEE 365
           VRSKL E FVELFAEVFC LPLAHV+N KVFVVHGGLFSVDGVKLSDI++IDRFCEPPEE
Sbjct: 304 VRSKLGEKFVELFAEVFCWLPLAHVINNKVFVVHGGLFSVDGVKLSDIRSIDRFCEPPEE 363

Query: 366 GLMCELLWSDPQPLPGRGPSKRGVGLSF----------------VVRSHEVKDEGYEIEH 409
           GLMCELLWSDPQP  GRGPSKRGV LSF                +VRSHEVKDEG+EIEH
Sbjct: 364 GLMCELLWSDPQPQLGRGPSKRGVALSFGADVTKKFLQENNLDLIVRSHEVKDEGHEIEH 423

Query: 410 DGKLITVFSAPNYCDQV 426
           DGKLITVFSAPNYCDQ+
Sbjct: 424 DGKLITVFSAPNYCDQM 440

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	429
TAIR|locus:2052345	538	PP5.2 "protein phosphatase 5.2	0.627	0.5	0.845	5.4e-195
UNIPROTKB|H0YDU8	485	PPP5C "Serine/threonine-protei	0.974	0.861	0.551	2.6e-127
UNIPROTKB|P53041	499	PPP5C "Serine/threonine-protei	0.974	0.837	0.551	2.6e-127
UNIPROTKB|F1RM25	499	PPP5C "Serine/threonine-protei	0.974	0.837	0.554	2.6e-127
RGD|68415	499	Ppp5c "protein phosphatase 5,	0.969	0.833	0.556	2.6e-127
UNIPROTKB|F1N719	499	PPP5C "Serine/threonine-protei	0.974	0.837	0.549	3.3e-127
MGI|MGI:102666	499	Ppp5c "protein phosphatase 5,	0.974	0.837	0.554	3.3e-127
FB|FBgn0005777	520	PpD3 "Protein phosphatase D3"	0.958	0.790	0.540	2.1e-125
WB|WBGene00012665	496	pph-5 [Caenorhabditis elegans	0.958	0.828	0.544	2.6e-125
ZFIN|ZDB-GENE-050327-75	481	zgc:110801 "zgc:110801" [Danio	0.981	0.875	0.539	1.3e-123

TAIR|locus:2052345 PP5.2 "protein phosphatase 5.2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1270 (452.1 bits), Expect = 5.4e-195, Sum P(2) = 5.4e-195
 Identities = 241/285 (84%), Positives = 258/285 (90%)

Query:   158 EVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDID 217
             +VEPQYSGARIEG+ +TLDFVK MM+DFKNQK LHKRYA+QIVLQTR++L ALPSLVDI 
Sbjct:   211 KVEPQYSGARIEGEEVTLDFVKTMMEDFKNQKTLHKRYAYQIVLQTRQILLALPSLVDIS 270

Query:   218 IPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFK 277
             +P GKH TVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVE+ILTLFAFK
Sbjct:   271 VPHGKHITVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEIILTLFAFK 330

Query:   278 CMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFV 337
             CMCPS+IYL+RGNHESKSMNKIYGFEGEVRSKLSE FV+LFAEVFC LPLAHV+N KVFV
Sbjct:   331 CMCPSSIYLARGNHESKSMNKIYGFEGEVRSKLSEKFVDLFAEVFCYLPLAHVINGKVFV 390

Query:   338 VHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF---- 393
             VHGGLFSVDGVKLSDI+ IDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF    
Sbjct:   391 VHGGLFSVDGVKLSDIRAIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGGDV 450

Query:   394 ------------VVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQV 426
                         +VRSHEVKDEGYE+EHDGKLITVFSAPNYCDQ+
Sbjct:   451 TKRFLQDNNLDLLVRSHEVKDEGYEVEHDGKLITVFSAPNYCDQM 495

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0006470 "protein dephosphorylation" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=ISS

GO:0004722 "protein serine/threonine phosphatase activity" evidence=ISS

GO:0005635 "nuclear envelope" evidence=IDA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010017 "red or far-red light signaling pathway" evidence=IMP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

UNIPROTKB|H0YDU8 PPP5C "Serine/threonine-protein phosphatase" [Homo sapiens (taxid:9606)]

 Score = 1250 (445.1 bits), Expect = 2.6e-127, P = 2.6e-127
 Identities = 240/435 (55%), Positives = 317/435 (72%)

Query:     8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSA 67
             + ++ RAEELK  AN+ F+AK Y  AI  YSQAIELN  NA+YY NR+ A+ + E YG A
Sbjct:    21 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYA 80

Query:    68 IQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127
             + DA++AIE+D +Y KGYYRR A+ +A+GKF+ AL+D++ V K+ P+D DA  K +EC K
Sbjct:    81 LGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 140

Query:   128 AVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKN 187
              VK+  FE AIA  E +R SV DS+D +S+ +E +YSG ++E   +T+ F+K++M  +K+
Sbjct:   141 IVKQKAFERAIAGDEHKR-SVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKD 199

Query:   188 QKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLP 247
             QK LH++ A+QI++Q +E+L  L +LV+  + + +  TVCGD HGQFYDLLNIFELNGLP
Sbjct:   200 QKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQFYDLLNIFELNGLP 259

Query:   248 SEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVR 307
             SE NPY+FNGDFVDRGSFSVEVILTLF FK + P   +L RGNHE+ +MN+IYGFEGEV+
Sbjct:   260 SETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVK 319

Query:   308 SKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGL 367
             +K +    ELF+EVF  LPLA  +N KV ++HGGLFS DGV L DI+ I+R  +PP+ G 
Sbjct:   320 AKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSEDGVTLDDIRKIERNRQPPDSGP 379

Query:   368 MCELLWSDPQPLPGRGPSKRGVG----------------LSFVVRSHEVKDEGYEIEHDG 411
             MC+LLWSDPQP  GR  SKRGV                 L +++RSHEVK EGYE+ H G
Sbjct:   380 MCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFLEENNLDYIIRSHEVKAEGYEVAHGG 439

Query:   412 KLITVFSAPNYCDQV 426
             + +TVFSAPNYCDQ+
Sbjct:   440 RCVTVFSAPNYCDQM 454

GO:0005634 "nucleus" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

UNIPROTKB|P53041 PPP5C "Serine/threonine-protein phosphatase 5" [Homo sapiens (taxid:9606)]

 Score = 1250 (445.1 bits), Expect = 2.6e-127, P = 2.6e-127
 Identities = 240/435 (55%), Positives = 317/435 (72%)

Query:     8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSA 67
             + ++ RAEELK  AN+ F+AK Y  AI  YSQAIELN  NA+YY NR+ A+ + E YG A
Sbjct:    22 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYA 81

Query:    68 IQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127
             + DA++AIE+D +Y KGYYRR A+ +A+GKF+ AL+D++ V K+ P+D DA  K +EC K
Sbjct:    82 LGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 141

Query:   128 AVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKN 187
              VK+  FE AIA  E +R SV DS+D +S+ +E +YSG ++E   +T+ F+K++M  +K+
Sbjct:   142 IVKQKAFERAIAGDEHKR-SVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKD 200

Query:   188 QKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLP 247
             QK LH++ A+QI++Q +E+L  L +LV+  + + +  TVCGD HGQFYDLLNIFELNGLP
Sbjct:   201 QKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQFYDLLNIFELNGLP 260

Query:   248 SEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVR 307
             SE NPY+FNGDFVDRGSFSVEVILTLF FK + P   +L RGNHE+ +MN+IYGFEGEV+
Sbjct:   261 SETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVK 320

Query:   308 SKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGL 367
             +K +    ELF+EVF  LPLA  +N KV ++HGGLFS DGV L DI+ I+R  +PP+ G 
Sbjct:   321 AKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSEDGVTLDDIRKIERNRQPPDSGP 380

Query:   368 MCELLWSDPQPLPGRGPSKRGVG----------------LSFVVRSHEVKDEGYEIEHDG 411
             MC+LLWSDPQP  GR  SKRGV                 L +++RSHEVK EGYE+ H G
Sbjct:   381 MCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFLEENNLDYIIRSHEVKAEGYEVAHGG 440

Query:   412 KLITVFSAPNYCDQV 426
             + +TVFSAPNYCDQ+
Sbjct:   441 RCVTVFSAPNYCDQM 455

GO:0006470 "protein dephosphorylation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0043278 "response to morphine" evidence=IEA

GO:0051291 "protein heterooligomerization" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IMP

GO:0004871 "signal transducer activity" evidence=IMP

GO:0004721 "phosphoprotein phosphatase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0004722 "protein serine/threonine phosphatase activity" evidence=TAS

GO:0006351 "transcription, DNA-dependent" evidence=TAS

GO:0007067 "mitosis" evidence=TAS

GO:0042802 "identical protein binding" evidence=IPI

GO:0007165 "signal transduction" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

UNIPROTKB|F1RM25 PPP5C "Serine/threonine-protein phosphatase" [Sus scrofa (taxid:9823)]

 Score = 1250 (445.1 bits), Expect = 2.6e-127, P = 2.6e-127
 Identities = 241/435 (55%), Positives = 316/435 (72%)

Query:     8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSA 67
             + ++ RAEELK  AN+ F+AK Y  AI  YSQAIELN  NA+YY NR+ A+ + E YG A
Sbjct:    22 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYA 81

Query:    68 IQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127
             + DA++AIE+D +Y KGYYRR A+ +A+GKF+ AL+D+Q V K+ P+D DA  K +EC K
Sbjct:    82 LADATRAIEMDKKYIKGYYRRAASNMALGKFRAALRDYQTVVKVKPHDKDAKMKYQECNK 141

Query:   128 AVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKN 187
              VK+  FE AIA  E +R SV DS+D +S+ +E +YSG ++E   +T  F+K++M  +K+
Sbjct:   142 IVKQKAFERAIAGDEHKR-SVVDSLDIESMTIEDEYSGPKLEDGRVTATFMKELMQWYKD 200

Query:   188 QKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLP 247
             QK LH++ A+QI++Q +E+L  L +LV+  + + +  TVCGD HGQFYDLLNIFELNGLP
Sbjct:   201 QKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQFYDLLNIFELNGLP 260

Query:   248 SEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVR 307
             SE NPY+FNGDFVDRGSFSVEVILTLF FK + P   +L RGNHE+ +MN+IYGFEGEV+
Sbjct:   261 SETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVK 320

Query:   308 SKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGL 367
             +K +    ELF+EVF  LPLA  +N KV ++HGGLFS DGV L DI+ I+R  +PP+ G 
Sbjct:   321 AKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSEDGVTLDDIRKIERSRQPPDSGP 380

Query:   368 MCELLWSDPQPLPGRGPSKRGVG----------------LSFVVRSHEVKDEGYEIEHDG 411
             MC+LLWSDPQP  GR  SKRGV                 L +++RSHEVK EGYE+ H G
Sbjct:   381 MCDLLWSDPQPQNGRSVSKRGVSCQFGPDVTKAFLEENHLDYIIRSHEVKAEGYEVAHGG 440

Query:   412 KLITVFSAPNYCDQV 426
             + +TVFSAPNYCDQ+
Sbjct:   441 RCVTVFSAPNYCDQM 455

GO:0043278 "response to morphine" evidence=IEA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

RGD|68415 Ppp5c "protein phosphatase 5, catalytic subunit" [Rattus norvegicus (taxid:10116)]

 Score = 1250 (445.1 bits), Expect = 2.6e-127, P = 2.6e-127
 Identities = 241/433 (55%), Positives = 314/433 (72%)

Query:    10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQ 69
             ++ RAEELK  AN+ F+AK Y  AI  YSQAIELN  NA+YY NR+ A+ + E YG A+ 
Sbjct:    24 TLKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALG 83

Query:    70 DASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129
             DA++AIE+D +Y KGYYRR A+ +A+GKF+ AL+D++ V K+ PND DA  K +EC K V
Sbjct:    84 DATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPNDKDAKMKYQECSKIV 143

Query:   130 KKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQK 189
             K+  FE AIA  E  R SV DS+D +S+ +E +YSG ++E   +T+ F+K +M  +K+QK
Sbjct:   144 KQKAFERAIAGDE-HRRSVVDSLDIESMTIEDEYSGPKLEDGKVTITFMKDLMQWYKDQK 202

Query:   190 CLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSE 249
              LH++ A+QI++Q +E+L  L +LV+  + + +  TVCGD HGQFYDLLNIFELNGLPSE
Sbjct:   203 KLHRKCAYQILVQVKEVLCKLSTLVETTLKETEKITVCGDTHGQFYDLLNIFELNGLPSE 262

Query:   250 ENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSK 309
              NPY+FNGDFVDRGSFSVEVILTLF FK + P   +L RGNHE+ +MN+IYGFEGEV++K
Sbjct:   263 TNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVKAK 322

Query:   310 LSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMC 369
              +    ELF+EVF  LPLA  +N KV ++HGGLFS DGV L DI+ I+R  +PP+ G MC
Sbjct:   323 YTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSEDGVTLDDIRKIERNRQPPDSGPMC 382

Query:   370 ELLWSDPQPLPGRGPSKRGVG----------------LSFVVRSHEVKDEGYEIEHDGKL 413
             +LLWSDPQP  GR  SKRGV                 L +++RSHEVK EGYE+ H G+ 
Sbjct:   383 DLLWSDPQPQNGRSVSKRGVSCQFGPDVTKAFLEENQLDYIIRSHEVKAEGYEVAHGGRC 442

Query:   414 ITVFSAPNYCDQV 426
             +TVFSAPNYCDQ+
Sbjct:   443 VTVFSAPNYCDQM 455

GO:0004721 "phosphoprotein phosphatase activity" evidence=ISO;IDA

GO:0004871 "signal transducer activity" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0006470 "protein dephosphorylation" evidence=IEA

GO:0007165 "signal transduction" evidence=ISO

GO:0016311 "dephosphorylation" evidence=ISO

GO:0042802 "identical protein binding" evidence=IEA;ISO

GO:0043005 "neuron projection" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA;ISO

GO:0043278 "response to morphine" evidence=IEA;ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051291 "protein heterooligomerization" evidence=IPI

UNIPROTKB|F1N719 PPP5C "Serine/threonine-protein phosphatase" [Bos taurus (taxid:9913)]

 Score = 1249 (444.7 bits), Expect = 3.3e-127, P = 3.3e-127
 Identities = 239/435 (54%), Positives = 317/435 (72%)

Query:     8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSA 67
             + ++ RAEELK  AN+ F+AK Y  AI  YSQAIELN  NA+YY NR+ A+ + E YG A
Sbjct:    22 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYA 81

Query:    68 IQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127
             + DA++A+E+D +Y KGYYRR A+ +A+GKF+ AL+D++ V K+ P+D DA  K +EC K
Sbjct:    82 LADATRAVEMDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 141

Query:   128 AVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKN 187
              VK+  FE AIA  E +R SV DS+D +S+ +E +YSG ++E   +T+ F+K++M  +K+
Sbjct:   142 IVKQKAFERAIAGDEHKR-SVVDSLDIESMTIEDEYSGPKLEDGRVTITFMKELMQWYKD 200

Query:   188 QKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLP 247
             QK LH++ A+QI++Q +E+L  L +LV+  + + +  TVCGD HGQFYDLLNIFELNGLP
Sbjct:   201 QKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQFYDLLNIFELNGLP 260

Query:   248 SEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVR 307
             SE NPY+FNGDFVDRGSFSVEVILTLF FK + P   +L RGNHE+ +MN+IYGFEGEV+
Sbjct:   261 SETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVK 320

Query:   308 SKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGL 367
             +K +    ELF+EVF  LPLA  +N KV ++HGGLFS DGV L DI+ I+R  +PP+ G 
Sbjct:   321 AKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSEDGVTLDDIRKIERSRQPPDSGP 380

Query:   368 MCELLWSDPQPLPGRGPSKRGVG----------------LSFVVRSHEVKDEGYEIEHDG 411
             MC+LLWSDPQP  GR  SKRGV                 L +++RSHEVK EGYE+ H G
Sbjct:   381 MCDLLWSDPQPQNGRSVSKRGVSCQFGPDVTKAFLEENKLDYIIRSHEVKAEGYEVAHGG 440

Query:   412 KLITVFSAPNYCDQV 426
             + +TVFSAPNYCDQ+
Sbjct:   441 RCVTVFSAPNYCDQM 455

GO:0043278 "response to morphine" evidence=IEA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:102666 Ppp5c "protein phosphatase 5, catalytic subunit" [Mus musculus (taxid:10090)]

 Score = 1249 (444.7 bits), Expect = 3.3e-127, P = 3.3e-127
 Identities = 241/435 (55%), Positives = 315/435 (72%)

Query:     8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSA 67
             + ++ RAEELK  AN+ F+AK Y  AI  YSQAIELN  NA+YY NR+ A+ + E YG A
Sbjct:    22 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPGNAIYYGNRSLAYLRTECYGYA 81

Query:    68 IQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127
             + DA++AIE+D +Y KGYYRR A+ +A+GKF+ AL+D++ V K+ PND DA  K +EC K
Sbjct:    82 LGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPNDKDAKMKYQECSK 141

Query:   128 AVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKN 187
              VK+  FE AIA  E  R SV DS+D +S+ +E +YSG ++E   +T+ F+K +M  +K+
Sbjct:   142 IVKQKAFERAIAGDE-HRRSVVDSLDIESMTIEDEYSGPKLEDGKVTITFMKDLMQWYKD 200

Query:   188 QKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLP 247
             QK LH++ A+QI++Q +E+L  L +LV+  + + +  TVCGD HGQFYDLLNIFELNGLP
Sbjct:   201 QKKLHRKCAYQILVQVKEVLCKLSTLVETTLKETEKITVCGDTHGQFYDLLNIFELNGLP 260

Query:   248 SEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVR 307
             SE NPY+FNGDFVDRGSFSVEVILTLF FK + P   +L RGNHE+ +MN+IYGFEGEV+
Sbjct:   261 SETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVK 320

Query:   308 SKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGL 367
             +K +    ELF+EVF  LPLA  +N KV ++HGGLFS DGV L DI+ I+R  +PP+ G 
Sbjct:   321 AKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSEDGVTLDDIRKIERNRQPPDSGP 380

Query:   368 MCELLWSDPQPLPGRGPSKRGVG----------------LSFVVRSHEVKDEGYEIEHDG 411
             MC+LLWSDPQP  GR  SKRGV                 L +++RSHEVK EGYE+ H G
Sbjct:   381 MCDLLWSDPQPQNGRSVSKRGVSCQFGPDVTKAFLEENQLDYIIRSHEVKAEGYEVAHGG 440

Query:   412 KLITVFSAPNYCDQV 426
             + +TVFSAPNYCDQ+
Sbjct:   441 RCVTVFSAPNYCDQM 455

GO:0004721 "phosphoprotein phosphatase activity" evidence=ISO;IMP

GO:0004871 "signal transducer activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006470 "protein dephosphorylation" evidence=IEA

GO:0007165 "signal transduction" evidence=ISO

GO:0016311 "dephosphorylation" evidence=IMP

GO:0016787 "hydrolase activity" evidence=IEA

GO:0042802 "identical protein binding" evidence=ISO

GO:0043005 "neuron projection" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=ISO

GO:0043278 "response to morphine" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0051291 "protein heterooligomerization" evidence=ISO

FB|FBgn0005777 PpD3 "Protein phosphatase D3" [Drosophila melanogaster (taxid:7227)]

 Score = 1232 (438.7 bits), Expect = 2.1e-125, P = 2.1e-125
 Identities = 231/427 (54%), Positives = 306/427 (71%)

Query:    14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
             AE+ K   NE  + K++S+AID+Y++AIEL+  +A+YYANR+ AH + E +G A+QD   
Sbjct:    49 AEQYKNQGNEMLKTKEFSKAIDMYTKAIELHPNSAIYYANRSLAHLRQESFGFALQDGVS 108

Query:    74 AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
             A++ DP Y KGYYRR AA++++GKFK+AL DF+ V K  PND DA  K  EC K VK   
Sbjct:   109 AVKADPAYLKGYYRRAAAHMSLGKFKQALCDFEFVAKCRPNDKDAKLKFTECNKIVKMRA 168

Query:   134 FEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHK 193
             FE AIAV + E+       D ++I +E  Y G ++E   +TL F+K++M+ +K QK LH+
Sbjct:   169 FERAIAVDKPEKTLSEMYSDMENITIEDDYKGPQLEDGKVTLKFMKELMEHYKAQKRLHR 228

Query:   194 RYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPY 253
             ++A++I+ +    +RA PSLVDI +PD + FT+CGD+HGQFYDL+NIFE+NGLPSE+NPY
Sbjct:   229 KFAYKILCEIDTYMRAQPSLVDITVPDEEKFTICGDIHGQFYDLMNIFEINGLPSEKNPY 288

Query:   254 LFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSET 313
             LFNGDFVDRGSFSVE I TLF FK + P+  +L+RGNHES +MN++YGF GEV +K +  
Sbjct:   289 LFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFLARGNHESINMNQMYGFTGEVTAKYTSA 348

Query:   314 FVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLW 373
               ++F +VF  LPL H +NQK+ V+HGGLFS + V L  I+ I+R C+PPEEGLMCELLW
Sbjct:   349 MADIFTQVFNWLPLCHCINQKILVMHGGLFSTEDVTLDHIRRIERNCQPPEEGLMCELLW 408

Query:   374 SDPQPLPGRGPSKRGVGLSF----------------VVRSHEVKDEGYEIEHDGKLITVF 417
             SDPQ   G G SKRGVG+ F                ++RSHEVKD GYE+ H+GK ITVF
Sbjct:   409 SDPQQWMGLGQSKRGVGIQFGPDVTEKFCKDNNLDYIIRSHEVKDMGYEVAHNGKCITVF 468

Query:   418 SAPNYCD 424
             SAPNYCD
Sbjct:   469 SAPNYCD 475

GO:0006470 "protein dephosphorylation" evidence=IEA;ISS;NAS

GO:0004722 "protein serine/threonine phosphatase activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=IMP

WB|WBGene00012665 pph-5 [Caenorhabditis elegans (taxid:6239)]

 Score = 1231 (438.4 bits), Expect = 2.6e-125, P = 2.6e-125
 Identities = 234/430 (54%), Positives = 310/430 (72%)

Query:    13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDAS 72
             +A  +K  AN+ F+ + Y  A DLYS AIE++   AV Y NRA A+ K E YGSA++DA 
Sbjct:    28 KAGMIKDEANQFFKDQVYDVAADLYSVAIEIHP-TAVLYGNRAQAYLKKELYGSALEDAD 86

Query:    73 KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132
              AI IDP Y KG+YRR  A +A+G+FK+AL D+Q V K+ PND DA  K  EC K V++ 
Sbjct:    87 NAIAIDPSYVKGFYRRATANMALGRFKKALTDYQAVVKVCPNDKDARAKFDECSKIVRRQ 146

Query:   133 KFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLH 192
             KFE AI+  + ++ +VA+++D  ++ +E  Y G R+E D IT +FV +++  FKNQ+ LH
Sbjct:   147 KFEAAIST-DHDKKTVAETLDINAMAIEDSYDGPRLE-DKITKEFVLQLIKTFKNQQKLH 204

Query:   193 KRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENP 252
             K+YAF+++L+    +++LP++V+I +P GK FT+CGDVHGQFYDL NIFE+NG PSE NP
Sbjct:   205 KKYAFKMLLEFYNYVKSLPTMVEITVPTGKKFTICGDVHGQFYDLCNIFEINGYPSETNP 264

Query:   253 YLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSE 312
             YLFNGDFVDRGSFSVE I T+  FK + P+  ++SRGNHES  MNK+YGFEGEV++K ++
Sbjct:   265 YLFNGDFVDRGSFSVETIFTMIGFKLLYPNHFFMSRGNHESDVMNKMYGFEGEVKAKYTQ 324

Query:   313 TFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELL 372
                ++F E FC LPL H++N+K+FV HGGLF  DGV L DI+  DR  +PP+EG+MC+LL
Sbjct:   325 QMCDMFTETFCWLPLCHLINEKIFVCHGGLFKEDGVTLEDIRKTDRNRQPPDEGIMCDLL 384

Query:   373 WSDPQPLPGRGPSKRGVGLSF----------------VVRSHEVKDEGYEIEHDGKLITV 416
             WSDPQP+ GR PSKRGVG  F                VVRSHEVK EGYE+ H+G+  TV
Sbjct:   385 WSDPQPINGRSPSKRGVGCQFGPDVTSKWCETNGIEYVVRSHEVKPEGYEMHHNGQCFTV 444

Query:   417 FSAPNYCDQV 426
             FSAPNYCDQ+
Sbjct:   445 FSAPNYCDQM 454

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0033365 "protein localization to organelle" evidence=IMP

GO:0072686 "mitotic spindle" evidence=IDA

GO:0045920 "negative regulation of exocytosis" evidence=IGI

ZFIN|ZDB-GENE-050327-75 zgc:110801 "zgc:110801" [Danio rerio (taxid:7955)]

 Score = 1215 (432.8 bits), Expect = 1.3e-123, P = 1.3e-123
 Identities = 237/439 (53%), Positives = 312/439 (71%)

Query:     4 METENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE 63
             M  E  + S AE+LK  AN+ F+ K Y  AI  Y++A++LN  N +YY+NR+ ++ + E 
Sbjct:     1 MAEEERNAS-AEKLKEKANDYFKDKDYENAIKYYTEALDLNPTNPIYYSNRSLSYLRTEC 59

Query:    64 YGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123
             YG A+ DA++A+E+D  Y KGYYRR  + +A+GKFK ALKD++ V ++ PND DA  K +
Sbjct:    60 YGYALADATRALELDKNYLKGYYRRATSNMALGKFKAALKDYETVVRVRPNDKDAKMKYQ 119

Query:   124 ECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMD 183
             EC K VK+  FE AIA  E +R SV DS+D +++ +E  Y+G ++E   +TL F++ +MD
Sbjct:   120 ECNKIVKQKAFERAIASDELKR-SVVDSLDIENMTIEDDYAGPKLEDGKVTLKFMEDLMD 178

Query:   184 DFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFEL 243
              FK+QK LH++ A+QI++Q +E+L  LPSLV+I + + +  T+CGD HGQ+YDLLNIFEL
Sbjct:   179 WFKDQKKLHRKCAYQILVQVKEVLTKLPSLVEITLKESEKITICGDTHGQYYDLLNIFEL 238

Query:   244 NGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFE 303
             N LPS  NPYLFNGDFVDRGSFSVEVILTLF FK + P   +L RGNHE+ +MN++YGFE
Sbjct:   239 NSLPSPTNPYLFNGDFVDRGSFSVEVILTLFGFKLLYPEHFHLLRGNHETDNMNQMYGFE 298

Query:   304 GEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPP 363
             GEV++K S    +LF+EVF  LPLA  +N KV V+HGGLFS DGV L DI+ IDR  +PP
Sbjct:   299 GEVKAKYSSQMFKLFSEVFQWLPLAQCINDKVLVMHGGLFSEDGVTLDDIRKIDRNRQPP 358

Query:   364 EEGLMCELLWSDPQPLPGRGPSKRGVG----------------LSFVVRSHEVKDEGYEI 407
             + G MC+LLWSDPQ   GR  SKRGV                 L ++VRSHEVK EGYE+
Sbjct:   359 DSGPMCDLLWSDPQLQNGRSISKRGVSCQFGPDVTERFLEQNKLEYIVRSHEVKAEGYEV 418

Query:   408 EHDGKLITVFSAPNYCDQV 426
              H GK ITVFSAPNYCDQ+
Sbjct:   419 THSGKCITVFSAPNYCDQM 437

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P53042	PPP5_RAT	3, ., 1, ., 3, ., 1, 6	0.5552	0.9720	0.8356	yes	no
P53041	PPP5_HUMAN	3, ., 1, ., 3, ., 1, 6	0.5517	0.9743	0.8376	yes	no
P53043	PPT1_YEAST	3, ., 1, ., 3, ., 1, 6	0.3986	0.9673	0.8089	yes	no
Q60676	PPP5_MOUSE	3, ., 1, ., 3, ., 1, 6	0.5540	0.9743	0.8376	yes	no
O43049	PPT1_SCHPO	3, ., 1, ., 3, ., 1, 6	0.4976	0.9627	0.8731	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.3.16	0.991
3rd Layer	3.1.3	0.976
3rd Layer	3.6.1.13	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_XIV2951 hypothetical protein (488 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	429
cd07417	316	cd07417, MPP_PP5_C, PP5, C-terminal metallophospha	0.0
smart00156	271	smart00156, PP2Ac, Protein phosphatase 2A homologu	1e-100
cd07420	321	cd07420, MPP_RdgC, Drosophila melanogaster RdgC an	1e-81
cd07416	305	cd07416, MPP_PP2B, PP2B, metallophosphatase domain	1e-77
cd07415	285	cd07415, MPP_PP2A_PP4_PP6, PP2A, PP4, and PP6 phos	6e-77
cd07414	293	cd07414, MPP_PP1_PPKL, PP1, PPKL (PP1 and kelch-li	2e-68
cd00144	225	cd00144, MPP_PPP_family, phosphoprotein phosphatas	2e-62
PTZ00244	294	PTZ00244, PTZ00244, serine/threonine-protein phosp	7e-57
cd07418	377	cd07418, MPP_PP7, PP7, metallophosphatase domain	1e-54
PTZ00480	320	PTZ00480, PTZ00480, serine/threonine-protein phosp	4e-54
PTZ00239	303	PTZ00239, PTZ00239, serine/threonine protein phosp	5e-52
cd07419	311	cd07419, MPP_Bsu1_C, Arabidopsis thaliana Bsu1 pho	1e-47
pfam08321	95	pfam08321, PPP5, PPP5 TPR repeat region	4e-42
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	4e-29
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	3e-24
pfam00149	185	pfam00149, Metallophos, Calcineurin-like phosphoes	2e-20
pfam13414	69	pfam13414, TPR_11, TPR repeat	4e-18
COG0639	155	COG0639, ApaH, Diadenosine tetraphosphatase and re	1e-17
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	1e-17
pfam13414	69	pfam13414, TPR_11, TPR repeat	1e-14
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	2e-10
TIGR02552	135	TIGR02552, LcrH_SycD, type III secretion low calci	5e-10
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	3e-08
TIGR03302	235	TIGR03302, OM_YfiO, outer membrane assembly lipopr	4e-08
COG5010	257	COG5010, TadD, Flp pilus assembly protein TadD, co	4e-08
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	7e-08
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	2e-07
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	2e-07
TIGR03939	800	TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-g	5e-07
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	1e-06
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-06
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	2e-06
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	2e-06
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	4e-06
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	5e-06
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	5e-06
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	5e-06
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	1e-05
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	2e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-05
cd07423	234	cd07423, MPP_PrpE, Bacillus subtilis PrpE and rela	2e-05
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	2e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	3e-05
pfam13414	69	pfam13414, TPR_11, TPR repeat	4e-05
pfam13371	73	pfam13371, TPR_9, Tetratricopeptide repeat	4e-05
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	4e-05
cd07424	207	cd07424, MPP_PrpA_PrpB, PrpA and PrpB, metallophos	6e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	7e-05
cd00838	131	cd00838, MPP_superfamily, metallophosphatase super	8e-05
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	1e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-04
cd07425	208	cd07425, MPP_Shelphs, Shewanella-like phosphatases	1e-04
pfam13431	34	pfam13431, TPR_17, Tetratricopeptide repeat	1e-04
TIGR02795	117	TIGR02795, tol_pal_ybgF, tol-pal system protein Yb	1e-04
PRK13625	245	PRK13625, PRK13625, bis(5'-nucleosyl)-tetraphospha	2e-04
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	3e-04
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	4e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	4e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	5e-04
PRK11788	389	PRK11788, PRK11788, tetratricopeptide repeat prote	7e-04
COG4785	297	COG4785, NlpI, Lipoprotein NlpI, contains TPR repe	8e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	9e-04
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	9e-04
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	9e-04
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.001
PRK15359	144	PRK15359, PRK15359, type III secretion system chap	0.001
PRK11189	296	PRK11189, PRK11189, lipoprotein NlpI; Provisional	0.001
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	0.002
pfam13181	34	pfam13181, TPR_8, Tetratricopeptide repeat	0.003
COG1729	262	COG1729, COG1729, Uncharacterized protein conserve	0.003
COG4235	287	COG4235, COG4235, Cytochrome c biogenesis factor [	0.003
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.004
TIGR04075	851	TIGR04075, bacter_Pnkp, polynucleotide kinase-phos	0.004

>gnl|CDD|163660 cd07417, MPP_PP5_C, PP5, C-terminal metallophosphatase domain

 Score =  541 bits (1395), Expect = 0.0
 Identities = 189/279 (67%), Positives = 226/279 (81%), Gaps = 16/279 (5%)

Query: 163 YSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGK 222
           Y G R+E + +TL+FVK+M++ FK+QK LHK+YA+QI+LQ +E+L+ LPSLV+I IP+G+
Sbjct: 1   YDGPRLEDEKVTLEFVKEMIEWFKDQKKLHKKYAYQILLQVKELLKKLPSLVEITIPEGE 60

Query: 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPS 282
             TVCGD HGQFYDLLNIFELNGLPSE NPYLFNGDFVDRGSFSVEVILTLFAFK + P+
Sbjct: 61  KITVCGDTHGQFYDLLNIFELNGLPSETNPYLFNGDFVDRGSFSVEVILTLFAFKLLYPN 120

Query: 283 AIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGL 342
             +L+RGNHE+ +MNK+YGFEGEV++K +E   +LF+EVF  LPLAH++N KV VVHGGL
Sbjct: 121 HFHLNRGNHETDNMNKMYGFEGEVKAKYNEQMFDLFSEVFNWLPLAHLINGKVLVVHGGL 180

Query: 343 FSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF--------- 393
           FS DGV L DI+ IDRF +PP+ GLMCELLWSDPQP PGR PSKRGVG  F         
Sbjct: 181 FSDDGVTLDDIRKIDRFRQPPDSGLMCELLWSDPQPQPGRSPSKRGVGCQFGPDVTKRFL 240

Query: 394 -------VVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQ 425
                  ++RSHEVKDEGYE+EHDGK ITVFSAPNYCDQ
Sbjct: 241 EENNLEYIIRSHEVKDEGYEVEHDGKCITVFSAPNYCDQ 279

Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination. Length = 316

>gnl|CDD|197547 smart00156, PP2Ac, Protein phosphatase 2A homologues, catalytic domain

 Score =  298 bits (765), Expect = e-100
 Identities = 123/252 (48%), Positives = 163/252 (64%), Gaps = 23/252 (9%)

Query: 191 LHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEE 250
           L+K    +++ + +E+ R  P+LV++  P     TVCGD+HGQF DLL +F+ NG P E 
Sbjct: 1   LYKEEILELLREVKEIFRQEPNLVEVSAP----VTVCGDIHGQFDDLLRLFDKNGQPPET 56

Query: 251 NPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKL 310
           N Y+F GD+VDRG FS+EVIL LFA K + P+ I L RGNHES+SMN+IYGF  E + K 
Sbjct: 57  N-YVFLGDYVDRGPFSIEVILLLFALKILYPNRIVLLRGNHESRSMNEIYGFYDECKRKY 115

Query: 311 SETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCE 370
            E   E F E F  LPLA ++N K+  +HGGL S D   L DI+ + R  EPP++GL+ +
Sbjct: 116 GERIYEKFNEAFSWLPLAALINGKILCMHGGL-SPDLTTLDDIRKLKRPQEPPDDGLLID 174

Query: 371 LLWSDP-QPLPGRGPSKRGVGLSF----------------VVRSHEVKDEGYEIEHDGKL 413
           LLWSDP QP+ G GPS RG    F                ++R+H+V D+GYE   DGKL
Sbjct: 175 LLWSDPDQPVNGFGPSIRGASYIFGPDAVDEFLKKNNLKLIIRAHQVVDDGYEFFADGKL 234

Query: 414 ITVFSAPNYCDQ 425
           +T+FSAPNYCD+
Sbjct: 235 VTIFSAPNYCDR 246

Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members. Length = 271

>gnl|CDD|163663 cd07420, MPP_RdgC, Drosophila melanogaster RdgC and related proteins, metallophosphatase domain

 Score =  253 bits (649), Expect = 1e-81
 Identities = 116/297 (39%), Positives = 163/297 (54%), Gaps = 49/297 (16%)

Query: 173 ITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHG 232
           +T D +  +++ FK ++ LH +Y   I+ + R++L+ LP++  +     K  T+CGD+HG
Sbjct: 2   LTKDHIDALIEAFKEKQLLHAKYVLLILREARKVLKQLPNISRVSTSISKQVTICGDLHG 61

Query: 233 QFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHE 292
           +  DL  IF  NGLPS ENPY+FNGDFVDRG  S+E+++ LFAF  + P+ ++L+RGNHE
Sbjct: 62  KLDDLFLIFYKNGLPSPENPYVFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHE 121

Query: 293 SKSMNKIYGFEGEVRSK---LSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVK 349
              MN  YGF  EV SK     +  + L  +VF  LPLA +++ K+ VVHGG  S D   
Sbjct: 122 DHIMNLRYGFTKEVMSKYKLHGKKILRLLEDVFSWLPLATIIDNKILVVHGG-IS-DSTD 179

Query: 350 LSDIKTIDR--------------------FCEPPEEGL-------MCELLWSDPQPLPGR 382
           L  +  IDR                      E P E L       + ++LWSDP+   G 
Sbjct: 180 LDLLDKIDRHKYVSVLRPPLRKGMEELTGEEEDPSEPLDKTEWRQILDILWSDPKAQKGC 239

Query: 383 GP-SKRGVG----------------LSFVVRSHEVKDEGYEIEHDGKLITVFSAPNY 422
            P + RG G                LS ++RSHE K EGYE  H+ K+IT+FSA NY
Sbjct: 240 KPNTFRGGGCYFGPDVTSKVLQKHGLSLLIRSHECKPEGYEFCHNNKVITIFSASNY 296

RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination. Length = 321

>gnl|CDD|163659 cd07416, MPP_PP2B, PP2B, metallophosphatase domain

 Score =  242 bits (621), Expect = 1e-77
 Identities = 111/280 (39%), Positives = 154/280 (55%), Gaps = 39/280 (13%)

Query: 175 LDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQF 234
           +D +K     F  +  L +  A +I+ +  E+LR  P+L+ I+ P     TVCGD+HGQF
Sbjct: 3   IDVLK---AHFMREGRLSEEDALRIITEGAEILRQEPNLLRIEAP----VTVCGDIHGQF 55

Query: 235 YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK 294
           YDLL +FE+ G P     YLF GD+VDRG FS+E +L L+A K + P  ++L RGNHE +
Sbjct: 56  YDLLKLFEVGGSP-ANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECR 114

Query: 295 SMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIK 354
            + + + F+ E + K SE   +   E F CLPLA ++NQ+   VHGGL S +   L DI+
Sbjct: 115 HLTEYFTFKQECKIKYSERVYDACMEAFDCLPLAALMNQQFLCVHGGL-SPELKTLDDIR 173

Query: 355 TIDRFCEPPEEGLMCELLWSDPQPLPGRGP--------SKRGV----------------G 390
            +DRF EPP  G MC+LLWSDP    G           + RG                  
Sbjct: 174 KLDRFREPPAFGPMCDLLWSDPLEDFGNEKTQEHFVHNTVRGCSYFYSYRAVCEFLQKNN 233

Query: 391 LSFVVRSHEVKDEGYEI--EHDGK----LITVFSAPNYCD 424
           L  ++R+HE +D GY +  +        LIT+FSAPNY D
Sbjct: 234 LLSIIRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLD 273

PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination. Length = 305

>gnl|CDD|163658 cd07415, MPP_PP2A_PP4_PP6, PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain

 Score =  240 bits (614), Expect = 6e-77
 Identities = 103/237 (43%), Positives = 138/237 (58%), Gaps = 23/237 (9%)

Query: 204 REMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRG 263
           +E+L    ++  +  P     TVCGD+HGQFYDLL +F + G P + N YLF GD+VDRG
Sbjct: 28  KEILVKESNVQRVRSP----VTVCGDIHGQFYDLLELFRVGGDPPDTN-YLFLGDYVDRG 82

Query: 264 SFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKL-SETFVELFAEVF 322
            +SVE  L L A K   P  I L RGNHES+ + ++YGF  E   K  +    +   ++F
Sbjct: 83  YYSVETFLLLLALKVRYPDRITLLRGNHESRQITQVYGFYDECLRKYGNANVWKYCTDLF 142

Query: 323 CCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGR 382
             LPLA +++ ++F VHGGL S     L  I+ IDRF E P EG MC+LLWSDP  + G 
Sbjct: 143 DYLPLAALIDNQIFCVHGGL-SPSIDTLDQIRAIDRFQEVPHEGPMCDLLWSDPDDIEGW 201

Query: 383 GPSKRGVG----------------LSFVVRSHEVKDEGYEIEHDGKLITVFSAPNYC 423
           G S RG G                L+ + R+H++  EGY+   D KL+TV+SAPNYC
Sbjct: 202 GISPRGAGYLFGQDVVEEFNHNNGLTLICRAHQLVMEGYQWMFDDKLVTVWSAPNYC 258

PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2A belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination. Length = 285

>gnl|CDD|163657 cd07414, MPP_PP1_PPKL, PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain

 Score =  219 bits (559), Expect = 2e-68
 Identities = 100/255 (39%), Positives = 150/255 (58%), Gaps = 23/255 (9%)

Query: 186 KNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNG 245
                L +     + L++RE+  + P L++++ P      +CGD+HGQ+YDLL +FE  G
Sbjct: 18  GKNVQLTEAEIRGLCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGG 73

Query: 246 LPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGE 305
            P E N YLF GD+VDRG  S+E I  L A+K   P   +L RGNHE  S+N+IYGF  E
Sbjct: 74  FPPESN-YLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDE 132

Query: 306 VRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEE 365
            + + +    + F + F CLP+A ++++K+F +HGGL S D   +  I+ I R  + P++
Sbjct: 133 CKRRYNIKLWKTFTDCFNCLPVAAIIDEKIFCMHGGL-SPDLQSMEQIRRIMRPTDVPDQ 191

Query: 366 GLMCELLWSDPQP-LPGRGPSKRGVGLSF----------------VVRSHEVKDEGYEIE 408
           GL+C+LLWSDP   + G G + RGV  +F                + R+H+V ++GYE  
Sbjct: 192 GLLCDLLWSDPDKDVQGWGENDRGVSFTFGKDVVAKFLNKHDLDLICRAHQVVEDGYEFF 251

Query: 409 HDGKLITVFSAPNYC 423
              +L+T+FSAPNYC
Sbjct: 252 AKRQLVTLFSAPNYC 266

PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination. Length = 293

>gnl|CDD|163613 cd00144, MPP_PPP_family, phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain

 Score =  200 bits (511), Expect = 2e-62
 Identities = 90/224 (40%), Positives = 110/224 (49%), Gaps = 32/224 (14%)

Query: 225 TVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAI 284
            V GD+HG   DLL + E  G P   +  +F GD+VDRG  SVEVI  L A K +  + I
Sbjct: 1   YVIGDIHGCLDDLLRLLEKIGFP-PNDKLIFLGDYVDRGPDSVEVIDLLLALKILPDNVI 59

Query: 285 YLSRGNHESKSMNKIYGFEGEV---------RSKLSETFVELFAEVFCCLPLAHVLNQ-K 334
            L RGNHE   +N +YGF  E            KL E   E F +VF  LPLA ++   K
Sbjct: 60  LL-RGNHEDMLLNFLYGFYDEDEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKK 118

Query: 335 VFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGV----- 389
           V  VHGGL          +   ++  E PE+ L  +LLWSDP  LPG   S R       
Sbjct: 119 VLCVHGGLS-------PGLPLEEQIKEEPEDQLPEDLLWSDPLELPGGFGSSRRGGGPDA 171

Query: 390 --------GLSFVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQ 425
                   GL  +VR H   +EGYE  HDG LIT+ S  NYC  
Sbjct: 172 VEWFLKKNGLKLIVRGHTPVEEGYEFGHDGNLITIDSGCNYCGG 215

The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination. Length = 225

>gnl|CDD|140271 PTZ00244, PTZ00244, serine/threonine-protein phosphatase PP1; Provisional

 Score =  188 bits (480), Expect = 7e-57
 Identities = 101/256 (39%), Positives = 147/256 (57%), Gaps = 24/256 (9%)

Query: 188 QKCLHKRYAFQIVLQT-REMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGL 246
           ++ L +    + VL   RE+  + P L++I  P      VCGD HGQ+YDLL IFE  G 
Sbjct: 21  RQILIREEDIRAVLTEVREIFMSQPMLLEIRPP----VRVCGDTHGQYYDLLRIFEKCGF 76

Query: 247 PSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEV 306
           P   N YLF GD+VDRG  SVE I   F +K + P   +L RGNHE  S+NK+YGF  +V
Sbjct: 77  PPYSN-YLFLGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECASINKMYGFFDDV 135

Query: 307 RSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEG 366
           + + +    + F +VF  +P+  V+++K+  +HGGL S D   L+ +  I+R C+ P+ G
Sbjct: 136 KRRYNIKLFKAFTDVFNTMPVCCVISEKIICMHGGL-SPDLTSLASVNEIERPCDVPDRG 194

Query: 367 LMCELLWSDPQ-PLPGRGPSKRGVGLSF----------------VVRSHEVKDEGYEIEH 409
           ++C+LLW+DP+  + G   S RGV   F                +VR+H+V + GY    
Sbjct: 195 ILCDLLWADPEDEVRGFLESDRGVSYLFGEDIVNDFLDMVDMDLIVRAHQVMERGYGFFA 254

Query: 410 DGKLITVFSAPNYCDQ 425
             +L+TVFSAPNYC +
Sbjct: 255 SRQLVTVFSAPNYCGE 270

Length = 294

>gnl|CDD|163661 cd07418, MPP_PP7, PP7, metallophosphatase domain

 Score =  185 bits (472), Expect = 1e-54
 Identities = 99/290 (34%), Positives = 140/290 (48%), Gaps = 65/290 (22%)

Query: 198 QIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG 257
            +VL   ++L   P+ V ID+ D     V GDVHGQ +D+L + E  G P +   Y+FNG
Sbjct: 42  SLVLTAHKILHREPNCVRIDVEDVCEVVVVGDVHGQLHDVLFLLEDAGFPDQNRFYVFNG 101

Query: 258 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSET---F 314
           D+VDRG++ +E  L L ++K + P  +YL RGNHESK    +YGFE EV +K  +     
Sbjct: 102 DYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESKFCTSMYGFEQEVLTKYGDKGKHV 161

Query: 315 VELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSD--------------------IK 354
                  F  LPLA ++  +V+  HGGLF    +                        + 
Sbjct: 162 YRKCLGCFEGLPLASIIAGRVYTAHGGLFRSPSLPKRKKQKGKNRRVLLLEPESESLKLG 221

Query: 355 TID-------RFCEPPEEGLMC---ELLWSDPQPLPGRGPSK-RGVGLSF---------- 393
           T+D          +PP EG      ++LWSDP   PG  P+K RG+GL +          
Sbjct: 222 TLDDLMKARRSVLDPPGEGSNLIPGDVLWSDPSLTPGLSPNKQRGIGLLWGPDCTEEFLE 281

Query: 394 ------VVRSHEVKD------------EGYEIEHD---GKLITVFSAPNY 422
                 ++RSHE  D            +GY ++HD   GKLIT+FSAP+Y
Sbjct: 282 KNNLKLIIRSHEGPDAREKRPGLAGMNKGYTVDHDVESGKLITLFSAPDY 331

PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination. Length = 377

>gnl|CDD|185658 PTZ00480, PTZ00480, serine/threonine-protein phosphatase; Provisional

 Score =  182 bits (463), Expect = 4e-54
 Identities = 95/244 (38%), Positives = 146/244 (59%), Gaps = 23/244 (9%)

Query: 199 IVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGD 258
           + ++ R++  + P L++++ P      +CGDVHGQ++DLL +FE  G P E N YLF GD
Sbjct: 40  LCIKARDIFISQPILLELEAP----LKICGDVHGQYFDLLRLFEYGGYPPESN-YLFLGD 94

Query: 259 FVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELF 318
           +VDRG  S+E I  L A+K   P   +L RGNHE  S+N+IYGF  E + + +    + F
Sbjct: 95  YVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYTIKLWKTF 154

Query: 319 AEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDP-Q 377
            + F CLP+A ++++K+  +HGGL S +   L  I+ I R  + P+ GL+C+LLWSDP +
Sbjct: 155 TDCFNCLPVAALIDEKILCMHGGL-SPELSNLEQIRRIMRPTDVPDTGLLCDLLWSDPDK 213

Query: 378 PLPGRGPSKRGVG----------------LSFVVRSHEVKDEGYEIEHDGKLITVFSAPN 421
            + G   ++RGV                 L  + R+H+V ++GYE     +L+T+FSAPN
Sbjct: 214 DVQGWADNERGVSYVFSQEIVQVFLKKHELDLICRAHQVVEDGYEFFSKRQLVTLFSAPN 273

Query: 422 YCDQ 425
           YC +
Sbjct: 274 YCGE 277

Length = 320

>gnl|CDD|173488 PTZ00239, PTZ00239, serine/threonine protein phosphatase 2A; Provisional

 Score =  176 bits (448), Expect = 5e-52
 Identities = 99/264 (37%), Positives = 139/264 (52%), Gaps = 24/264 (9%)

Query: 178 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDL 237
           + + +    N  CL +R    I  + +E+     ++  +  P      VCGD+HGQFYDL
Sbjct: 3   IDRHIATLLNGGCLPERDLKLICERAKEIFLEESNVQPVRAP----VNVCGDIHGQFYDL 58

Query: 238 LNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMN 297
             +F+  G     N Y+F GDFVDRG  SVE +  L   K   P  I L RGNHES+   
Sbjct: 59  QALFKEGGDIPNAN-YIFIGDFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHESRQCT 117

Query: 298 KIYGFEGEVRSKLSETFV-ELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTI 356
           ++YGF  E+  K   +    LF +VF CLPLA ++  ++  VHGGL S D   +  I+TI
Sbjct: 118 QVYGFYEEILRKYGNSNPWRLFMDVFDCLPLAALIEGQILCVHGGL-SPDMRTIDQIRTI 176

Query: 357 DRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVG----------------LSFVVRSHEV 400
           DR  E P EG  C+L+WSDP+ +     + RG G                L+ + R+H++
Sbjct: 177 DRKIEIPHEGPFCDLMWSDPEEVEYWAVNSRGAGYLFGAKVTKEFCRLNDLTLICRAHQL 236

Query: 401 KDEGYEIEH-DGKLITVFSAPNYC 423
             EGY+    D  L+TV+SAPNYC
Sbjct: 237 VMEGYKYWFPDQNLVTVWSAPNYC 260

Length = 303

>gnl|CDD|163662 cd07419, MPP_Bsu1_C, Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain

 Score =  164 bits (418), Expect = 1e-47
 Identities = 87/252 (34%), Positives = 128/252 (50%), Gaps = 45/252 (17%)

Query: 211 PSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEE-------NPYLFNGDFVDRG 263
           P ++ +  P      + GD+HGQF DL+ +F+  G P  E         YLF GD+VDRG
Sbjct: 41  PMVLRLRAP----IKIFGDIHGQFGDLMRLFDEYGSPVTEAAGDIEYIDYLFLGDYVDRG 96

Query: 264 SFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSE-----TFV-EL 317
           S S+E I  L A K   P+ I+L RGNHE + +N ++GF  E + +L E       V   
Sbjct: 97  SNSLETICLLLALKVKYPNQIHLIRGNHEDRDINALFGFREECKERLGEDPNDGDSVWRR 156

Query: 318 FAEVFCCLPLAHVLNQKVFVVHGGL-FSVDGVKLSDIKTIDR-FCEPPEEGLMCELLWSD 375
              +F  LPLA ++  K+  +HGG+  S++   +S+I+ + R       E ++ +LLWSD
Sbjct: 157 INRLFEWLPLAAIIEDKILCMHGGIGRSIN--HVSEIEDLKRPLTMEFGEQVVMDLLWSD 214

Query: 376 P---QPLPGRGPS---KRGVGLSF------------------VVRSHEVKDEGYEIEHDG 411
           P     + G  P+    RG GL                    ++R+HE   +G+E    G
Sbjct: 215 PTENDSVLGLRPNAIDPRGPGLIVKFGPDRVHRFLEENDLQMIIRAHECVMDGFERFAQG 274

Query: 412 KLITVFSAPNYC 423
           KLIT+FSA NYC
Sbjct: 275 KLITLFSATNYC 286

Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination. Length = 311

>gnl|CDD|149395 pfam08321, PPP5, PPP5 TPR repeat region

 Score =  143 bits (363), Expect = 4e-42
 Identities = 57/96 (59%), Positives = 77/96 (80%), Gaps = 1/96 (1%)

Query: 121 KVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKK 180
           K+KECEK VK++ FEEAIAVPE +R SVADSID +++ +E  Y G R+E   +TL+FVK 
Sbjct: 1   KLKECEKLVKQIAFEEAIAVPEQKR-SVADSIDIENMTIEDDYDGPRLEDGKVTLEFVKD 59

Query: 181 MMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDI 216
           MM+ FK+QK LHK+ A+QI+LQ +E+L+ LPSLV+I
Sbjct: 60  MMERFKDQKKLHKKCAYQILLQVKELLKKLPSLVEI 95

This region is specific to the PPP5 subfamily of serine/threonine phosphatases and contains TPR repeats. Length = 95

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score =  109 bits (273), Expect = 4e-29
 Identities = 40/100 (40%), Positives = 62/100 (62%)

Query: 15  EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKA 74
           E L  L N  ++   Y +A++ Y +A+EL+  NA  Y N A A+ KL +Y  A++D  KA
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 75  IEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114
           +E+DP   K YY  G AY  +GK++EAL+ +++  +L PN
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score =  102 bits (256), Expect = 3e-24
 Identities = 48/156 (30%), Positives = 83/156 (53%), Gaps = 6/156 (3%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           A++L+  A EAF    ++ A+DLY+QAI+L+  NA  YA+RA A+ KL  +  A+ DA+K
Sbjct: 2   AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANK 61

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK--- 130
           AIE+DP   K Y R+G A + + +++ A    ++   L+P D    + +KEC++ +    
Sbjct: 62  AIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEEE 121

Query: 131 KLKFEEAIAVPESERHSVADSIDYQS---IEVEPQY 163
           K   +   +   S   +        +      +P+Y
Sbjct: 122 KDLVQPVPSDLPSSVTAPPVEEADATPVVPPSKPKY 157

Length = 356

>gnl|CDD|215750 pfam00149, Metallophos, Calcineurin-like phosphoesterase

 Score = 88.3 bits (218), Expect = 2e-20
 Identities = 50/152 (32%), Positives = 62/152 (40%), Gaps = 27/152 (17%)

Query: 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENP--YLFNGDFVDRGSFSVEVILTLFAFKCMC 280
              V GD+HG   DL  +  L  L  E  P   LF GD VDRG  S+EV+  LFA K   
Sbjct: 1   RILVIGDLHGGLDDLDLLLLLLELLGEPKPDLVLFLGDLVDRGPPSLEVLALLFALKLKA 60

Query: 281 PSAIYLSRGNHESKSMNKIYGFEGEV-------------------------RSKLSETFV 315
           P  +YL RGNH+  S N   GF  E                            K      
Sbjct: 61  PGPVYLVRGNHDFDSGNSELGFYLECAGLPYVLGNGDVSNGTVEIIGLSSLYGKGGGLVW 120

Query: 316 ELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDG 347
           E F E+   L LA +++ K+ +VHG L     
Sbjct: 121 EEFLELLDLLLLAALVDGKILLVHGPLSPSLD 152

This family includes a diverse range of phosphoesterases, including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this superfamily centre around the metal chelating residues. Length = 185

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 77.7 bits (192), Expect = 4e-18
 Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL-EEYGSAIQDA 71
           AE LK L N  F+   Y +AI+ Y +A+EL+  NA  Y N A A+ KL ++Y  A++D 
Sbjct: 2  NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61

Query: 72 SKAIEIDP 79
           KA+E+DP
Sbjct: 62 EKALELDP 69

Length = 69

>gnl|CDD|223712 COG0639, ApaH, Diadenosine tetraphosphatase and related serine/threonine protein phosphatases [Signal transduction mechanisms]

 Score = 79.7 bits (196), Expect = 1e-17
 Identities = 49/152 (32%), Positives = 59/152 (38%), Gaps = 24/152 (15%)

Query: 296 MNKIYGFEGEVRSKLSETFV----ELFAEVFCCLPL-AHVLNQKVFVVHGGLFSVDGVKL 350
           +  +YGF  E   K  E           E F  LPL A     K+   HGGL       L
Sbjct: 3   LTALYGFYDEKLRKYGEELEWLRAAGGLETFDSLPLAAVAEGGKLLCHHGGLSPGLDRLL 62

Query: 351 SDIKTIDR--FCEPPEEGLMCELLWSDPQPLPGRG--PSKRGVGLSF------------- 393
             I+ +DR   CE P  G   +LLWSDP     R   P  RGV                 
Sbjct: 63  DIIEVLDRLRACEVPHAGHTHDLLWSDPDGGDRRIWNPGPRGVPRDGGDVTAVFGIVHTP 122

Query: 394 --VVRSHEVKDEGYEIEHDGKLITVFSAPNYC 423
             + R+H + D        G L+T FSAPNYC
Sbjct: 123 KLIERAHVLYDIDTGAVFGGGLLTAFSAPNYC 154

Length = 155

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 84.7 bits (209), Expect = 1e-17
 Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 3/162 (1%)

Query: 6   TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYG 65
           +E      A +LK   N+A+R K +++AI LYS+AIE    + VYY+NRA  H  L ++ 
Sbjct: 119 SEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECK-PDPVYYSNRAACHNALGDWE 177

Query: 66  SAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP-NDPDAAQKVKE 124
             ++D + A+E+DP Y K   RR  AY  +GK+ +AL D      +    +  +AQ V+ 
Sbjct: 178 KVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVER 237

Query: 125 CEKAVKKLKFEEAIAVPESERHSVADSIDY-QSIEVEPQYSG 165
             K   + K +E +        SV    +Y QS   +P+ +G
Sbjct: 238 LLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAG 279

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 68.1 bits (167), Expect = 1e-14
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 46  QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGK-FKEALKD 104
            NA    N   A  KL +Y  AI+   KA+E+DP   + YY    AYL +GK ++EAL+D
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 105 FQQVKKLSP 113
            ++  +L P
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 61.0 bits (146), Expect = 2e-10
 Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 1/103 (0%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-AVYYANRAFAHTKLEEYGSAIQDA 71
            AE L AL        +Y +A++L  +A++LN  + A    N    + KL +Y  A++  
Sbjct: 166 LAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYY 225

Query: 72  SKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114
            KA+E+DP   +  Y      L +G+++EAL+  ++  +L P+
Sbjct: 226 EKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268

Length = 291

>gnl|CDD|233924 TIGR02552, LcrH_SycD, type III secretion low calcium response chaperone LcrH/SycD

 Score = 56.9 bits (138), Expect = 5e-10
 Identities = 29/118 (24%), Positives = 57/118 (48%)

Query: 15  EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKA 74
           E++ ALA   ++  +Y +A+ L+      +  N+ Y+   A     L+EY  AI   + A
Sbjct: 18  EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALA 77

Query: 75  IEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132
             +DP  P+ Y+      LA+G+ + ALK      ++   +P+ ++  +  E  ++ L
Sbjct: 78  AALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAMLESL 135

Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. Length = 135

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 54.5 bits (129), Expect = 3e-08
 Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 6/132 (4%)

Query: 12  SRAEELKALANEAFRAKKYSQAIDLYSQAIELN---SQNAVYYANRAFAHTKLEEYGSAI 68
               E        +    Y +A++LY +A+EL+   ++ A            L  Y  A+
Sbjct: 128 PDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEAL 187

Query: 69  QDASKAIEIDP-RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127
           +   KA++++P    +     G  YL +GK++EAL+ +++  +L P++ +A   +     
Sbjct: 188 ELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLL 247

Query: 128 AVKKLKFEEAIA 139
            +   ++EEA+ 
Sbjct: 248 ELG--RYEEALE 257

Length = 291

>gnl|CDD|234164 TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO

 Score = 53.3 bits (129), Expect = 4e-08
 Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 21/131 (16%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRA-----FAHTKLEEYGSAI 68
           AEEL   A EA  +  Y++AI  +         +   YA +A     +A+ K  +Y  AI
Sbjct: 33  AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP--YAEQAQLDLAYAYYKSGDYAEAI 90

Query: 69  QDASKAIEIDPRYPK---GYYRRGAAYLAM--------GKFKEALKDFQQVKKLSPND-- 115
             A + I + P +P     YY RG +               +EA + FQ++ +  PN   
Sbjct: 91  AAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEY 150

Query: 116 -PDAAQKVKEC 125
            PDA +++   
Sbjct: 151 APDAKKRMDYL 161

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795) [Protein fate, Protein and peptide secretion and trafficking]. Length = 235

>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

 Score = 53.6 bits (129), Expect = 4e-08
 Identities = 26/143 (18%), Positives = 47/143 (32%)

Query: 12  SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDA 71
              E L A      R   + +A+ +  +A  L   +   +     A  +L  +  A +  
Sbjct: 98  KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAY 157

Query: 72  SKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131
            +A+E+ P  P      G + L  G  ++A             D    Q +         
Sbjct: 158 RQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGD 217

Query: 132 LKFEEAIAVPESERHSVADSIDY 154
            +  E IAV E      A+++  
Sbjct: 218 FREAEDIAVQELLSEQAANNVAA 240

Length = 257

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 54.7 bits (132), Expect = 7e-08
 Identities = 27/130 (20%), Positives = 44/130 (33%), Gaps = 8/130 (6%)

Query: 12  SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDA 71
                   LA  A    ++ +A  L  + +  +  N      +      L     A+   
Sbjct: 157 RSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAY 216

Query: 72  SKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA--- 128
            KAI + P             +  G+F+EA K    + K +PN P A        KA   
Sbjct: 217 RKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYL-----KALVD 271

Query: 129 VKKLKFEEAI 138
            +K  +E+A 
Sbjct: 272 FQKKNYEDAR 281

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 16/64 (25%), Positives = 21/64 (32%)

Query: 19 ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID 78
          ALA  A RA  Y +A+     A+      A        A  +      A      A+  D
Sbjct: 2  ALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAAD 61

Query: 79 PRYP 82
          P  P
Sbjct: 62 PDDP 65

Length = 65

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 46.3 bits (111), Expect = 2e-07
 Identities = 14/34 (41%), Positives = 23/34 (67%)

Query: 82  PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND 115
            K  Y  G AYL +GK+ EAL+ +++  +L+PN+
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|234406 TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA

 Score = 51.6 bits (124), Expect = 5e-07
 Identities = 40/194 (20%), Positives = 73/194 (37%), Gaps = 39/194 (20%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           A  L+ALA      K++ +A++LY + ++ +  N       A       +   A++   +
Sbjct: 86  ARVLEALAKAYRNEKQWDKALELYRKLLQRDPNNPDGLLGLALTLADAGKDAEALKYLKE 145

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK------------ 121
            +   P     Y        A     +AL+ +QQ   L P++P+AA +            
Sbjct: 146 YVARFPTDAARYEALAYVLRAAEDHLDALQAWQQALTLEPDNPEAALELYRILTRLGAPP 205

Query: 122 -----VK--------------ECEKAVKKLKFEEAIAVPESERHSVADS--IDYQSI--- 157
                 K              E ++A + ++  E  +  E ER ++AD    D Q++   
Sbjct: 206 AAARLAKQYPDLFTPEDQRWLEHDQAAELVRLGENPSRSEKERFAIADRALADLQALLDK 265

Query: 158 ---EVEPQYSGARI 168
              +  P Y  ARI
Sbjct: 266 WGPQANPLYRRARI 279

Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats. Length = 800

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 49.8 bits (117), Expect = 1e-06
 Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 4/130 (3%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIE--LNSQNAVYYANRAFAHTKLEEYGSAIQDA 71
           A  L  LA    +  +  +A++L  +A+E  L    A    N       L +Y  A++  
Sbjct: 59  AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELL 118

Query: 72  SKAIEIDPRYPKGYYRRG-AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE-CEKAV 129
            KA+ +DP            A   +G ++EAL+ +++  +L P   + A+ +        
Sbjct: 119 EKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLE 178

Query: 130 KKLKFEEAIA 139
              ++EEA+ 
Sbjct: 179 ALGRYEEALE 188

Length = 291

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 17/142 (11%)

Query: 24  AFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE--YGSAIQDASKAIEIDPRY 81
            ++     QA    +Q ++    +  + A R  A  +L       AI   S A+ +DP  
Sbjct: 305 EYQLGNLEQAYQYLNQILKYAPNS--HQARRLLASIQLRLGRVDEAIATLSPALGLDPDD 362

Query: 82  PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL---KFEEAI 138
           P      G AYLA+G F++A +   +  +L P +  A  +       + KL      EAI
Sbjct: 363 PAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQ-----LGISKLSQGDPSEAI 417

Query: 139 AVPESERHSVADSIDYQSIEVE 160
           A  E+     A  +D +    +
Sbjct: 418 ADLET-----AAQLDPELGRAD 434

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 50.0 bits (119), Expect = 2e-06
 Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 2/108 (1%)

Query: 31  SQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90
            +A + + +A++LNS++   Y +RA  H    E+  A +D  K+I++DP +   + + G 
Sbjct: 382 DKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGV 441

Query: 91  AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAI 138
                G    ++  F++ KK  P  PD      E    + + KF+EAI
Sbjct: 442 TQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGEL--LLDQNKFDEAI 487

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 43.6 bits (104), Expect = 2e-06
 Identities = 12/34 (35%), Positives = 21/34 (61%)

Query: 82  PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND 115
            +  Y  G AYL +G + EAL+ +++  +L PN+
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 48.8 bits (116), Expect = 4e-06
 Identities = 26/86 (30%), Positives = 47/86 (54%)

Query: 29  KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88
           K+ +A+   S++IEL+ +    Y  RA  + +L +   A +D  KA++++   P  YY R
Sbjct: 346 KHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHR 405

Query: 89  GAAYLAMGKFKEALKDFQQVKKLSPN 114
              +   G+F +A KD+Q+   L P+
Sbjct: 406 AQLHFIKGEFAQAGKDYQKSIDLDPD 431

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 25/102 (24%), Positives = 45/102 (44%)

Query: 17  LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE 76
            + LA+   R  +  +AI   S A+ L+  +    +    A+  L ++  A +  +KA E
Sbjct: 332 RRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATE 391

Query: 77  IDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
           +DP       + G + L+ G   EA+ D +   +L P    A
Sbjct: 392 LDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRA 433

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 35/171 (20%), Positives = 58/171 (33%), Gaps = 15/171 (8%)

Query: 6   TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE-- 63
           T       AE L           +   A   Y QA+ ++ ++   YA    A   L E  
Sbjct: 117 TLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSL--YAKLGLAQLALAENR 174

Query: 64  YGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA----- 118
           +  A     + +  DP        +G   L++G  + AL  +++   L PN+        
Sbjct: 175 FDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALA 234

Query: 119 --AQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGAR 167
               +  E E+A K        A      H +   +D+Q    +  Y  AR
Sbjct: 235 TILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQ----KKNYEDAR 281

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 42.9 bits (102), Expect = 5e-06
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 82  PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND 115
            +  Y  G AY  +G ++EAL+ +++  +L PN+
Sbjct: 1   AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 47.3 bits (112), Expect = 1e-05
 Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 5/104 (4%)

Query: 17  LKALANEAFRAKKYSQAIDLYSQAIELNS---QNAVYYANRAFAHTKLEEYGSAIQDASK 73
           LK+  ++A   + Y +A   + +A++L     + A+    R        ++  A+ D SK
Sbjct: 299 LKSPESKA--DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117
           +IE+DPR  + Y +R +  L +G   +A +DF +  KL+  DPD
Sbjct: 357 SIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPD 400

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 46.0 bits (107), Expect = 2e-05
 Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 5/131 (3%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIEL--NSQNAVYYANRAFAHTKLEEYGSAIQD 70
               L+A         + ++A++L  +A+EL  NS  A      A A  KL     A++ 
Sbjct: 22  ALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALEL 81

Query: 71  ASKAIE--IDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA 128
             KA+E  + P   +     G    A+GK++EAL+  ++   L P+   A   +      
Sbjct: 82  LEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALY 141

Query: 129 VKKLKFEEAIA 139
                +EEA+ 
Sbjct: 142 ELG-DYEEALE 151

Length = 291

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 18/93 (19%), Positives = 32/93 (34%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
                A+  Y +AI L   N       A    +  E+  A + A   ++  P  P  +Y 
Sbjct: 207 GNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYL 266

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120
           +         +++A +  Q   K +P    A  
Sbjct: 267 KALVDFQKKNYEDARETLQDALKSAPEYLPALL 299

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 7/124 (5%)

Query: 17  LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE 76
           + ALA    R     +A+    +A ELN Q        A  +    +   A+   ++A +
Sbjct: 536 ILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAAD 595

Query: 77  IDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP-------DAAQKVKECEKAV 129
             P  P+ +   G A LA G   +A+  F+++  L P+         DA   +K   KA+
Sbjct: 596 AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAI 655

Query: 130 KKLK 133
             LK
Sbjct: 656 TSLK 659

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|163666 cd07423, MPP_PrpE, Bacillus subtilis PrpE and related proteins, metallophosphatase domain

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 42/140 (30%), Positives = 57/140 (40%), Gaps = 24/140 (17%)

Query: 224 FTVCGDVHGQFYDLLNIFELNG---------LPSEENPYLFNGDFVDRGSFSVEVI-LTL 273
           F + GDVHG + +L  + E  G            E    +F GD VDRG  S EV+ L +
Sbjct: 3   FDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVM 62

Query: 274 FAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSET----------FVELFAEVFC 323
                    A     GNH++K   K+ G   ++   L ET          F E   E + 
Sbjct: 63  SMVA---AGAALCVPGNHDNKLYRKLQGRNVKITHGLEETVAQLEAESEEFKEEVIEFYE 119

Query: 324 CLPLAHVL-NQKVFVVHGGL 342
            LP   VL   K+ V H G+
Sbjct: 120 SLPSHLVLDEGKLVVAHAGI 139

PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination. Length = 234

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 7/78 (8%)

Query: 44  NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI-------DPRYPKGYYRRGAAYLAMG 96
           +   A    N A    +L +Y  A++   KA+E+        P   +        YLA+G
Sbjct: 1   HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60

Query: 97  KFKEALKDFQQVKKLSPN 114
            + EAL+  ++   L   
Sbjct: 61  DYDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 13/117 (11%)

Query: 13  RAEELKA--------LANEAFRAKKYSQAIDLYSQAIELNSQN-AVYYANRAFAHTKLEE 63
           +A  L          LA       K+ Q +D       L+ +  A   A R  A+  L +
Sbjct: 81  KALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQ 140

Query: 64  YGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM--GKFKEALKDFQQVKKLSPNDPDA 118
              A +   +A+ IDPR    Y + G A LA+   +F EA     +V    P + DA
Sbjct: 141 LELAQKSYEQALAIDPRSL--YAKLGLAQLALAENRFDEARALIDEVLTADPGNVDA 195

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 85  YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIA 139
               G A   +G + EA++ +++  +L P++ +A   +      + K  +EEA+ 
Sbjct: 6   LKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGK-DYEEALE 59

Length = 69

>gnl|CDD|205550 pfam13371, TPR_9, Tetratricopeptide repeat

 Score = 41.4 bits (98), Expect = 4e-05
 Identities = 17/64 (26%), Positives = 31/64 (48%)

Query: 57  AHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116
            + + E++  A+    + + + P  P     RG  Y  +G F+ AL D +   +L P+ P
Sbjct: 4   IYLREEDFERALAVVERLLLLAPDDPYERRDRGLLYAQLGCFQAALADLEYFLELCPDAP 63

Query: 117 DAAQ 120
           DA +
Sbjct: 64  DAER 67

Length = 73

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 26/108 (24%), Positives = 40/108 (37%), Gaps = 6/108 (5%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRA---FAHTKLEEYGSAIQ 69
                   A + + A +Y +A+ L    I     N  Y            K +E   AI+
Sbjct: 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKE---AIE 361

Query: 70  DASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117
              KA+ +DP  P        A L  GK +EA++   +     P DP+
Sbjct: 362 RLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPN 409

Length = 484

>gnl|CDD|163667 cd07424, MPP_PrpA_PrpB, PrpA and PrpB, metallophosphatase domain

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 45/184 (24%), Positives = 56/184 (30%), Gaps = 48/184 (26%)

Query: 226 VCGDVHGQFYDLLNIFELNGLPSEENPY---LFN-GDFVDRGSFSVEVILTLFAFKCMCP 281
           V GD+HG +  L    +  G     +P    L + GD +DRG  S+   L L        
Sbjct: 5   VVGDIHGHYSLLQKALDAVGF----DPARDRLISVGDLIDRGPESLAC-LELLLE----- 54

Query: 282 SAIYLSRGNHESKSMNKIYGFEGEVRSK--------------LSETFVELFAEVFCCLPL 327
              +  RGNHE      I     E                    E      A     LPL
Sbjct: 55  PWFHAVRGNHE---QMAIDALRAEPLDAVRWLANGGEWFLDLPDEELRRWLALKLEQLPL 111

Query: 328 AHVL---NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWS-------DPQ 377
           A  +     KV +VH           SD            E    ELLWS         Q
Sbjct: 112 AIEVETEGGKVGIVHA---DYPSDDWSDGVGAVTLRPEDIE----ELLWSRTRIQKAQTQ 164

Query: 378 PLPG 381
           P+ G
Sbjct: 165 PIKG 168

PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination. Length = 207

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 18/90 (20%), Positives = 38/90 (42%)

Query: 27  AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86
           A   ++A+  + + + L   +A+     A A+  ++ Y  AI    +A+E+ P   +   
Sbjct: 614 AGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQI 673

Query: 87  RRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116
                 LA  + + A K  + ++K  P   
Sbjct: 674 GLAQLLLAAKRTESAKKIAKSLQKQHPKAA 703

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|163614 cd00838, MPP_superfamily, metallophosphatase superfamily, metallophosphatase domain

 Score = 41.9 bits (98), Expect = 8e-05
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 226 VCGDVHGQFYDLLNIFELNGLPSEENP--YLFNGDFVDRGSFSVEVILTLFAFKCMCPSA 283
           V  D+HG    L  + E   L + E P   L  GD V  G    EV+    A   +    
Sbjct: 2   VISDIHGNLEALEAVLEAA-LAAAEKPDFVLVLGDLVGDGPDPEEVLAAALALLLLLGIP 60

Query: 284 IYLSRGNHE 292
           +Y+  GNH+
Sbjct: 61  VYVVPGNHD 69

Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination. Length = 131

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 43.3 bits (100), Expect = 1e-04
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 6/94 (6%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           AE L  L     +  KY +A++ Y +A+EL+  NA    N A    +L  Y  A++   K
Sbjct: 202 AEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEK 261

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQ 107
           A+E+DP      Y  G A L +    EAL+  ++
Sbjct: 262 ALELDPD----LYNLGLALLLL--LAEALELLEK 289

Length = 291

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 3/100 (3%)

Query: 19  ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGS-AIQDASKAIEI 77
           ALA      K Y +AI  Y   ++    NAV   N A+ +  LE     A++ A +A+++
Sbjct: 775 ALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLY--LELKDPRALEYAERALKL 832

Query: 78  DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117
            P  P      G   +  G+   AL   ++   ++P    
Sbjct: 833 APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAA 872

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|163668 cd07425, MPP_Shelphs, Shewanella-like phosphatases, metallophosphatase domain

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 38/139 (27%), Positives = 56/139 (40%), Gaps = 29/139 (20%)

Query: 228 GDVHGQFYDLLNIFELNGLPSEENPYLFN-------GDFVDRGSFSVEVILTLFAFKCMC 280
           GD+HG       I +  G+    + ++         GD  DRG   +E++  L+  +   
Sbjct: 4   GDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEA 63

Query: 281 PSA----IYLSRGNHESKSMNKIYGFEGEVRSKLSETFV-------ELFA---EVFCCL- 325
             A     +L  GNHE   MN + G    V  K    F        ELF+   E+   L 
Sbjct: 64  AKAGGKVHFLL-GNHE--LMN-LCGDFRYVHPKYFNEFGGLAMRRRELFSPGGELGRWLR 119

Query: 326 --PLAHVLNQKVFVVHGGL 342
             P+   +N  +F VHGGL
Sbjct: 120 SKPVIVKVNDTLF-VHGGL 137

This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination. Length = 208

>gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 73  KAIEIDPRYPKGYYRRGAAYLAMGKFKEALK 103
           KA+E+DP   + YY      L +G++ EAL+
Sbjct: 4   KALELDPNNAEAYYNLALLLLNLGQYDEALQ 34

Length = 34

>gnl|CDD|188247 TIGR02795, tol_pal_ybgF, tol-pal system protein YbgF

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 11/112 (9%)

Query: 21  ANEAFRAKKYSQAIDLYSQAIELNSQ-----NAVYYANRAFAHTKLEEYGSAIQDASKAI 75
           A    +A  Y+ AI  +   ++   +     NA Y+   A+      +Y  A +     +
Sbjct: 7   ALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAY--YAQGDYADAAKAFLAVV 64

Query: 76  EIDPRYPK---GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE 124
           +  P+ PK      + G +   +G  ++A    QQV K  P    AA+  ++
Sbjct: 65  KKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSS-AAKLAQK 115

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. Length = 117

>gnl|CDD|184187 PRK13625, PRK13625, bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 41/151 (27%)

Query: 223 HFTVCGDVHGQFYDLLNIFEL------NGLP--SEENPYLFNGDFVDRGSFSVEVILTLF 274
            + + GD+HG + +   + E       +GLP   ++    F GD  DRG  S+ +I    
Sbjct: 2   KYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMI--EI 59

Query: 275 AFKCMCPSAIYLSRGNHESKSMNKIY------------GFEGEV----------RSKLSE 312
            ++ +   A Y   GNH     NK+Y            G E  V          ++ + E
Sbjct: 60  VWELVEKKAAYYVPGNH----CNKLYRFFLGRNVTIAHGLETTVAEYEALPSHKQNMIKE 115

Query: 313 TFVELFAEVFCCLPLAHVL-NQKVFVVHGGL 342
            F+ L+ +     PL H+L   ++ V H G+
Sbjct: 116 KFITLYEQA----PLYHILDEGRLVVAHAGI 142

Length = 245

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 37.4 bits (88), Expect = 3e-04
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY 81
          A    N   A+ KL +Y  A++   KA+E++P  
Sbjct: 1  AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 37.0 bits (87), Expect = 4e-04
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN 47
          A+ L  L N   +  KY +A++ Y +A+ELN  N
Sbjct: 1  AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 7/71 (9%)

Query: 17 LKALANEAFRAKKYSQAIDLYSQAIELNSQN-------AVYYANRAFAHTKLEEYGSAIQ 69
          L  LA    R   Y +A++L  +A+EL  +        A    N A  +  L +Y  A++
Sbjct: 8  LNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALE 67

Query: 70 DASKAIEIDPR 80
             KA+ +   
Sbjct: 68 YLEKALALREA 78

Length = 78

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 19/119 (15%)

Query: 7   ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--NSQNAVYYANRAFAHTKLEEY 64
           +      A   +   +   R K Y  AI  Y +A++   +SQNA+          KL   
Sbjct: 696 QKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAI----------KLHRA 745

Query: 65  GSAIQDASKA-------IEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116
             A  + ++A       ++  P            YLA   + +A+K +Q V K +P++ 
Sbjct: 746 LLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNA 804

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|236983 PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional

 Score = 41.3 bits (98), Expect = 7e-04
 Identities = 34/140 (24%), Positives = 57/140 (40%), Gaps = 27/140 (19%)

Query: 13  RAEEL--KALANEAFRAKKYSQAIDLYSQ------AIE------------LNSQNAVYY- 51
           RAEEL  + +    F      Q +++Y Q      AI+            L  + A +Y 
Sbjct: 125 RAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYC 184

Query: 52  --ANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVK 109
             A +A A   L+    A     KA+  DP+  +     G   LA G +  A++  ++V+
Sbjct: 185 ELAQQALARGDLDA---ARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVE 241

Query: 110 KLSPND-PDAAQKVKECEKA 128
           +  P    +   K+ EC +A
Sbjct: 242 EQDPEYLSEVLPKLMECYQA 261

Length = 389

>gnl|CDD|227124 COG4785, NlpI, Lipoprotein NlpI, contains TPR repeats [General function prediction only]

 Score = 41.0 bits (96), Expect = 8e-04
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 12/100 (12%)

Query: 17  LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE 76
           L+ALA   F     SQA+ +     E+ +   +Y        T+   + +A +     +E
Sbjct: 80  LRALARNDF-----SQALAIRPDMPEVFNYLGIYL-------TQAGNFDAAYEAFDSVLE 127

Query: 77  IDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116
           +DP Y   +  RG A    G++K A  D     +  PNDP
Sbjct: 128 LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP 167

Length = 297

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 41.2 bits (97), Expect = 9e-04
 Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 10/106 (9%)

Query: 19  ALANEAFRAKKYSQAIDLYSQAIEL-----NSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           ALA     A ++ +A      A  L     NS  A Y   +A    + + Y  A +    
Sbjct: 232 ALATILIEAGEFEEA---EKHADALLKKAPNSPLAHYL--KALVDFQKKNYEDARETLQD 286

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119
           A++  P Y       GA+   +G  ++A +   Q+ K +PN   A 
Sbjct: 287 ALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQAR 332

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 36.3 bits (85), Expect = 9e-04
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN 47
          AE L  L N   +   Y +A++ Y +A+EL+  N
Sbjct: 1  AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 36.3 bits (85), Expect = 9e-04
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY 81
          A    N   A+ KL +Y  A++   KA+E+DP  
Sbjct: 1  AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 85  YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIA 139
               G  Y  +G + EAL+ +++  +L P++ DA   +       K  K+EEA+ 
Sbjct: 3   LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAY--YKLGKYEEALE 55

Length = 100

>gnl|CDD|185257 PRK15359, PRK15359, type III secretion system chaperone protein SscB; Provisional

 Score = 38.8 bits (90), Expect = 0.001
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 4/104 (3%)

Query: 15  EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHT--KLEEYGSAIQDAS 72
           E + A    +++   YS+A+  +S  +   +Q   + A+ A A T   L+EY +AI    
Sbjct: 25  ETVYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYG 82

Query: 73  KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116
            A+ +D  +P+  Y+ G     MG+   A + FQ   K+S  D 
Sbjct: 83  HALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADA 126

Length = 144

>gnl|CDD|236875 PRK11189, PRK11189, lipoprotein NlpI; Provisional

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 14/87 (16%)

Query: 37  YSQAIELNSQNA-------VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89
           +SQA+ L    A       +Y        T+   + +A +     +E+DP Y   Y  RG
Sbjct: 87  FSQALALRPDMADAYNYLGIYL-------TQAGNFDAAYEAFDSVLELDPTYNYAYLNRG 139

Query: 90  AAYLAMGKFKEALKDFQQVKKLSPNDP 116
            A    G+++ A  D     +  PNDP
Sbjct: 140 IALYYGGRYELAQDDLLAFYQDDPNDP 166

Length = 296

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 35.2 bits (82), Expect = 0.002
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN 47
          AE L  L    ++   Y +A++ Y +A+EL+  N
Sbjct: 1  AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

>gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat

 Score = 34.8 bits (81), Expect = 0.003
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 85  YYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114
           YY  G  YL +G ++EA + +++  +L PN
Sbjct: 4   YYLLGQIYLQLGDYEEAKEYYEKALELDPN 33

Length = 34

>gnl|CDD|224643 COG1729, COG1729, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 30/152 (19%), Positives = 52/152 (34%), Gaps = 32/152 (21%)

Query: 3   NMETENSSVSRAEELKALANEAFRAKKYSQAIDLYS---------QAIELNS-----QNA 48
           N+E +  + +R + L++        +  +Q I   S          +  ++        A
Sbjct: 88  NVERQEENEARLDSLES------GRQALAQGIGDQSGAAPDATTPGSASVDGDGAPVSPA 141

Query: 49  VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG------YYRRGAAYLAMGKFKEAL 102
               N A    K  +Y  A Q     I+   +YP        YY  G +  A G +++A 
Sbjct: 142 TKLYNAALDLYKSGDYAEAEQAFQAFIK---KYPNSTYTPNAYYWLGESLYAQGDYEDAA 198

Query: 103 KDF---QQVKKLSPNDPDAAQKVKECEKAVKK 131
             F    +    SP  PDA  K+      +  
Sbjct: 199 YIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230

Length = 262

>gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 4/109 (3%)

Query: 12  SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYAN--RAFAHTKLEEYGSAIQ 69
             AE    L        + S A+  Y  A+ L   N         A  +   ++  +  +
Sbjct: 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKAR 213

Query: 70  DA-SKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQ-VKKLSPNDP 116
               +A+ +DP   +       A    G + EA   +Q  +  L  +DP
Sbjct: 214 ALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262

Length = 287

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 19/89 (21%), Positives = 37/89 (41%)

Query: 31  SQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90
           S+AI     A +L+ +          ++ +  ++  A+  A K  +  P     +   GA
Sbjct: 414 SEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGA 473

Query: 91  AYLAMGKFKEALKDFQQVKKLSPNDPDAA 119
            YL  G   +A + F++   + P+   AA
Sbjct: 474 IYLGKGDLAKAREAFEKALSIEPDFFPAA 502

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234457 TIGR04075, bacter_Pnkp, polynucleotide kinase-phosphatase

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 42/145 (28%), Positives = 59/145 (40%), Gaps = 29/145 (20%)

Query: 224 FTVCGDVHGQFYDLLNIFELNGLPSEENPY--------------LFNGDFVDRGSFSVEV 269
           F + GDVHG   +L  + E  G   E +                +F GD VDRG  S  V
Sbjct: 182 FDIIGDVHGCRDELETLLEELGYQIERDEGGRPVDVTHPEGRKAVFVGDLVDRGPDSPGV 241

Query: 270 ILTLFAFKCMCPSAIYLS-RGNHESKSMNKIYGFEGEVRSKLSETFVELFAE-------- 320
              L     M  +   L   GNH+ K +  + G   ++   L+ET  +L AE        
Sbjct: 242 ---LRLVMGMVAAGTALCVPGNHDVKLLRALRGRNVKLTHGLAETLEQLAAESEEFRAEV 298

Query: 321 -VFCCLPLAH-VLNQ-KVFVVHGGL 342
             F    ++H VL+  K+ V H GL
Sbjct: 299 KEFLDGLVSHYVLDDGKLVVAHAGL 323

Members of this protein family are the bacterial polynucleotide kinase-phosphatase (Pnkp) whose genes occur paired with genes for the 3' terminal RNA ribose 2'-O-methyltransferase Hen1. All members of the seed alignment belong to a cassette with the Hen1. The pair acts in bacterial RNA repair. This enzyme performs end-healing reactions on broken RNA, preparing from the RNA ligase to close the break. The working hypothesis is that the combination of Pnkp (RNA repair) and Hen1 (RNA modification) serves to first repair RNA damage from ribotoxins and then perform a modification that prevents the damage from recurring [Transcription, RNA processing]. Length = 851

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	429
KOG0372	303	consensus Serine/threonine specific protein phosph	100.0
KOG0373	306	consensus Serine/threonine specific protein phosph	100.0
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	100.0
cd07417	316	MPP_PP5_C PP5, C-terminal metallophosphatase domai	100.0
cd07420	321	MPP_RdgC Drosophila melanogaster RdgC and related	100.0
cd07415	285	MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein	100.0
PTZ00480	320	serine/threonine-protein phosphatase; Provisional	100.0
KOG0374	331	consensus Serine/threonine specific protein phosph	100.0
PTZ00239	303	serine/threonine protein phosphatase 2A; Provision	100.0
KOG0375	517	consensus Serine-threonine phosphatase 2B, catalyt	100.0
PTZ00244	294	serine/threonine-protein phosphatase PP1; Provisio	100.0
cd07414	293	MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzyme	100.0
cd07416	305	MPP_PP2B PP2B, metallophosphatase domain. PP2B (ca	100.0
cd07418	377	MPP_PP7 PP7, metallophosphatase domain. PP7 is a p	100.0
KOG0371	319	consensus Serine/threonine protein phosphatase 2A,	100.0
smart00156	271	PP2Ac Protein phosphatase 2A homologues, catalytic	100.0
cd07419	311	MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase a	100.0
KOG0377	631	consensus Protein serine/threonine phosphatase RDG	100.0
cd00144	225	MPP_PPP_family phosphoprotein phosphatases of the	99.98
PRK13625	245	bis(5'-nucleosyl)-tetraphosphatase PrpE; Provision	99.93
cd07413	222	MPP_PA3087 Pseudomonas aeruginosa PA3087 and relat	99.9
cd07425	208	MPP_Shelphs Shewanella-like phosphatases, metallop	99.9
cd07423	234	MPP_PrpE Bacillus subtilis PrpE and related protei	99.9
cd07422	257	MPP_ApaH Escherichia coli ApaH and related protein	99.9
PRK11439	218	pphA serine/threonine protein phosphatase 1; Provi	99.9
TIGR00668	279	apaH bis(5'-nucleosyl)-tetraphosphatase (symmetric	99.89
PHA02239	235	putative protein phosphatase	99.88
cd07424	207	MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase do	99.88
cd07421	304	MPP_Rhilphs Rhilph phosphatases, metallophosphatas	99.88
PRK00166	275	apaH diadenosine tetraphosphatase; Reviewed	99.87
PRK09968	218	serine/threonine-specific protein phosphatase 2; P	99.85
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.77
KOG0553	304	consensus TPR repeat-containing protein [General f	99.75
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.71
PRK15359	144	type III secretion system chaperone protein SscB;	99.7
KOG1126	638	consensus DNA-binding cell division cycle control	99.62
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.6
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.58
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.58
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.57
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.56
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.54
PRK11189	296	lipoprotein NlpI; Provisional	99.51
PRK15359	144	type III secretion system chaperone protein SscB;	99.5
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.5
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.49
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.48
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.48
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.47
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.46
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.46
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.45
PRK12370	553	invasion protein regulator; Provisional	99.45
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.44
PRK12370	553	invasion protein regulator; Provisional	99.43
KOG1126	638	consensus DNA-binding cell division cycle control	99.42
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.41
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.41
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.4
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.39
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.39
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.38
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.37
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.36
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.36
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.36
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.35
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.34
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.34
KOG1125	579	consensus TPR repeat-containing protein [General f	99.32
KOG4234	271	consensus TPR repeat-containing protein [General f	99.32
KOG1125	579	consensus TPR repeat-containing protein [General f	99.3
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.29
PLN02789	320	farnesyltranstransferase	99.29
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.29
PRK11189	296	lipoprotein NlpI; Provisional	99.28
PRK15331	165	chaperone protein SicA; Provisional	99.28
KOG2076	895	consensus RNA polymerase III transcription factor	99.27
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.27
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.26
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.26
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.25
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.24
KOG0553	304	consensus TPR repeat-containing protein [General f	99.23
PLN02789	320	farnesyltranstransferase	99.23
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.21
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.21
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.2
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.19
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.19
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.19
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.18
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.17
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.17
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.16
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.15
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.14
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.14
KOG2003	840	consensus TPR repeat-containing protein [General f	99.13
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.12
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.12
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.12
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.11
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.1
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.1
PRK10803	263	tol-pal system protein YbgF; Provisional	99.09
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.08
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.07
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.07
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.07
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.06
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.05
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.03
PRK14574	822	hmsH outer membrane protein; Provisional	99.02
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.01
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.0
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.96
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.96
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.96
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.95
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.92
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.91
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.91
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.91
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.91
KOG4555	175	consensus TPR repeat-containing protein [Function	98.91
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.89
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.89
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.88
PF12688	120	TPR_5: Tetratrico peptide repeat	98.88
PF13512	142	TPR_18: Tetratricopeptide repeat	98.88
PF13371	73	TPR_9: Tetratricopeptide repeat	98.87
KOG1129	478	consensus TPR repeat-containing protein [General f	98.87
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.87
KOG2076	895	consensus RNA polymerase III transcription factor	98.85
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.85
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.85
PF13371	73	TPR_9: Tetratricopeptide repeat	98.84
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.84
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.84
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.84
PRK11906	458	transcriptional regulator; Provisional	98.83
KOG1129	478	consensus TPR repeat-containing protein [General f	98.83
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.81
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.81
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.81
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	98.8
PF00149	200	Metallophos: Calcineurin-like phosphoesterase; Int	98.8
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.8
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.79
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.79
PRK09453	182	phosphodiesterase; Provisional	98.78
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.78
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.77
PRK11906	458	transcriptional regulator; Provisional	98.77
PRK14574	822	hmsH outer membrane protein; Provisional	98.76
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.76
COG0639	155	ApaH Diadenosine tetraphosphatase and related seri	98.76
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.74
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.74
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.73
cd00841	155	MPP_YfcE Escherichia coli YfcE and related protein	98.72
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.72
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.7
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.67
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.66
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.65
KOG2003	840	consensus TPR repeat-containing protein [General f	98.65
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.64
PRK15331	165	chaperone protein SicA; Provisional	98.63
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.62
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.62
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.62
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.61
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.6
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.58
PF08321	95	PPP5: PPP5 TPR repeat region; InterPro: IPR013235	98.57
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.57
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.56
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.56
cd07397	238	MPP_DevT Myxococcus xanthus DevT and related prote	98.52
TIGR00040	158	yfcE phosphoesterase, MJ0936 family. Members of th	98.51
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.5
PRK10803	263	tol-pal system protein YbgF; Provisional	98.48
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.46
PF12850	156	Metallophos_2: Calcineurin-like phosphoesterase su	98.39
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.38
PF12688	120	TPR_5: Tetratrico peptide repeat	98.38
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.37
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.35
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.34
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.32
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.31
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.31
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.3
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.28
KOG4234	271	consensus TPR repeat-containing protein [General f	98.24
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.22
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.2
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.2
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.2
PF13428	44	TPR_14: Tetratricopeptide repeat	98.2
KOG4555	175	consensus TPR repeat-containing protein [Function	98.18
PF13431	34	TPR_17: Tetratricopeptide repeat	98.17
PF13428	44	TPR_14: Tetratricopeptide repeat	98.17
cd07388	224	MPP_Tt1561 Thermus thermophilus Tt1561 and related	98.16
cd07379	135	MPP_239FB Homo sapiens 239FB and related proteins,	98.14
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.11
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.04
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.03
PF13431	34	TPR_17: Tetratricopeptide repeat	98.03
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.02
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.01
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.99
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.99
cd00838	131	MPP_superfamily metallophosphatase superfamily, me	97.98
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.96
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.95
cd07394	178	MPP_Vps29 Homo sapiens Vps29 and related proteins,	97.93
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.93
PF13512	142	TPR_18: Tetratricopeptide repeat	97.93
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.92
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.91
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.89
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.84
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.84
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.83
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.83
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.8
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.8
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.8
PRK05340	241	UDP-2,3-diacylglucosamine hydrolase; Provisional	97.79
cd07404	166	MPP_MS158 Microscilla MS158 and related proteins,	97.78
PLN03077	857	Protein ECB2; Provisional	97.75
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.73
cd07392	188	MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and rel	97.73
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.71
KOG2471	696	consensus TPR repeat-containing protein [General f	97.71
PLN03077	857	Protein ECB2; Provisional	97.67
PRK11340	271	phosphodiesterase YaeI; Provisional	97.66
PLN03218	1060	maturation of RBCL 1; Provisional	97.66
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.61
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.6
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.59
KOG1310	758	consensus WD40 repeat protein [General function pr	97.58
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.58
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.57
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.55
cd07385	223	MPP_YkuE_C Bacillus subtilis YkuE and related prot	97.54
cd07390	168	MPP_AQ1575 Aquifex aeolicus AQ1575 and related pro	97.51
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.49
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.49
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.46
PLN03218	1060	maturation of RBCL 1; Provisional	97.45
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.44
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.43
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.38
cd07403	129	MPP_TTHA0053 Thermus thermophilus TTHA0053 and rel	97.37
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.35
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.35
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.34
KOG1586	288	consensus Protein required for fusion of vesicles	97.34
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.31
TIGR03729	239	acc_ester putative phosphoesterase. Members of thi	97.3
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.3
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.26
cd07391	172	MPP_PF1019 Pyrococcus furiosus PF1019 and related	97.26
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.23
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.21
PRK10941	269	hypothetical protein; Provisional	97.2
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.15
cd07396	267	MPP_Nbla03831 Homo sapiens Nbla03831 and related p	97.11
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.11
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.11
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.09
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.08
TIGR00619	253	sbcd exonuclease SbcD. This family is based on the	97.07
TIGR01854	231	lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase.	97.04
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.02
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.02
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.01
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.01
KOG1586	288	consensus Protein required for fusion of vesicles	97.0
cd07402	240	MPP_GpdQ Enterobacter aerogenes GpdQ and related p	96.95
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.95
cd07400	144	MPP_YydB Bacillus subtilis YydB and related protei	96.93
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.91
COG0622	172	Predicted phosphoesterase [General function predic	96.9
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.89
PRK04841	903	transcriptional regulator MalT; Provisional	96.88
PRK11148	275	cyclic 3',5'-adenosine monophosphate phosphodieste	96.87
KOG1585	308	consensus Protein required for fusion of vesicles	96.87
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.87
PRK04841	903	transcriptional regulator MalT; Provisional	96.86
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.85
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	96.84
PHA02546	340	47 endonuclease subunit; Provisional	96.82
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.81
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	96.8
cd00844	262	MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-t	96.8
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.77
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.77
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.76
cd08166	195	MPP_Cdc1_like_1 uncharacterized subgroup related t	96.76
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.75
cd07398	217	MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and relat	96.72
cd07383	199	MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase	96.72
PRK10941	269	hypothetical protein; Provisional	96.71
cd00840	223	MPP_Mre11_N Mre11 nuclease, N-terminal metallophos	96.69
KOG3364	149	consensus Membrane protein involved in organellar	96.68
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.67
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.66
cd07393	232	MPP_DR1119 Deinococcus radiodurans DR1119 and rela	96.64
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.62
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.6
PRK04036	504	DNA polymerase II small subunit; Validated	96.56
cd07399	214	MPP_YvnB Bacillus subtilis YvnB and related protei	96.54
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.46
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.45
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.43
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.41
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.36
COG4186	186	Predicted phosphoesterase or phosphohydrolase [Gen	96.36
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.34
TIGR00024	225	SbcD_rel_arch putative phosphoesterase, SbcD/Mre11	96.32
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	96.27
cd07384	171	MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and re	96.26
TIGR00583	405	mre11 DNA repair protein (mre11). All proteins in	96.25
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.23
cd08165	156	MPP_MPPE1 human MPPE1 and related proteins, metall	96.18
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.15
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.14
cd08163	257	MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related	96.12
PRK10966	407	exonuclease subunit SbcD; Provisional	96.12
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.11
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.1
cd07395	262	MPP_CSTP1 Homo sapiens CSTP1 and related proteins,	95.98
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.95
cd08164	193	MPP_Ted1 Saccharomyces cerevisiae Ted1 and related	95.94
COG1409	301	Icc Predicted phosphohydrolases [General function	95.93
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.92
cd07380	150	MPP_CWF19_N Schizosaccharomyces pombe CWF19 and re	95.91
COG2908	237	Uncharacterized protein conserved in bacteria [Fun	95.87
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.86
KOG2047	835	consensus mRNA splicing factor [RNA processing and	95.85
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.65
cd07401	256	MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metal	95.63
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.62
cd00839	294	MPP_PAPs purple acid phosphatases of the metalloph	95.59
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	95.48
COG5191	435	Uncharacterized conserved protein, contains HAT (H	95.42
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	95.35
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.33
COG1408	284	Predicted phosphohydrolases [General function pred	95.32
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.3
KOG2471	696	consensus TPR repeat-containing protein [General f	95.24
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	95.21
KOG1585	308	consensus Protein required for fusion of vesicles	95.17
cd07386	243	MPP_DNA_pol_II_small_archeal_C archeal DNA polymer	95.08
cd00845	252	MPP_UshA_N_like Escherichia coli UshA-like family,	95.03
COG2912	269	Uncharacterized conserved protein [Function unknow	95.0
KOG2047	835	consensus mRNA splicing factor [RNA processing and	94.97
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	94.94
KOG1550	552	consensus Extracellular protein SEL-1 and related	94.92
KOG3662	410	consensus Cell division control protein/predicted	94.88
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	94.76
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	94.72
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	94.7
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.67
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.66
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	94.58
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	94.39
COG2912	269	Uncharacterized conserved protein [Function unknow	94.12
KOG4507	886	consensus Uncharacterized conserved protein, conta	94.11
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.04
KOG3364	149	consensus Membrane protein involved in organellar	93.92
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	93.92
KOG1258	577	consensus mRNA processing protein [RNA processing	93.89
COG0420	390	SbcD DNA repair exonuclease [DNA replication, reco	93.82
KOG2300	629	consensus Uncharacterized conserved protein [Funct	93.71
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	93.6
KOG1550	552	consensus Extracellular protein SEL-1 and related	93.57
COG2129	226	Predicted phosphoesterases, related to the Icc pro	93.55
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	93.52
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	93.5
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	93.32
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	93.3
COG1407	235	Predicted ICC-like phosphoesterases [General funct	93.19
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	93.16
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	93.14
COG5191	435	Uncharacterized conserved protein, contains HAT (H	93.12
KOG0529	421	consensus Protein geranylgeranyltransferase type I	93.08
COG3118	304	Thioredoxin domain-containing protein [Posttransla	93.06
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	92.93
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	92.93
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	92.8
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	92.78
PF14582	255	Metallophos_3: Metallophosphoesterase, calcineurin	92.69
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	92.59
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.47
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	92.46
cd07410	277	MPP_CpdB_N Escherichia coli CpdB and related prote	92.39
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	92.35
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	92.19
cd07378	277	MPP_ACP5 Homo sapiens acid phosphatase 5 and relat	92.05
KOG2300	629	consensus Uncharacterized conserved protein [Funct	91.82
KOG4814	872	consensus Uncharacterized conserved protein [Funct	91.81
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	91.74
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	91.64
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	91.58
KOG1310	758	consensus WD40 repeat protein [General function pr	91.57
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	91.53
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	91.45
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	91.42
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	91.4
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	91.38
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	91.14
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	90.87
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	90.78
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	90.69
COG3629	280	DnrI DNA-binding transcriptional activator of the	90.54
COG3898	531	Uncharacterized membrane-bound protein [Function u	90.47
COG1311	481	HYS2 Archaeal DNA polymerase II, small subunit/DNA	89.99
PLN02533	427	probable purple acid phosphatase	89.74
KOG0529	421	consensus Protein geranylgeranyltransferase type I	89.74
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	89.57
KOG0918	476	consensus Selenium-binding protein [Inorganic ion	89.48
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	89.41
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	89.34
cd07412	288	MPP_YhcR_N Bacillus subtilis YhcR endonuclease and	89.22
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	89.15
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	88.99
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	88.97
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	88.82
cd07408	257	MPP_SA0022_N Staphylococcus aureus SA0022 and rela	88.6
COG3898	531	Uncharacterized membrane-bound protein [Function u	88.34
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	88.32
cd07411	264	MPP_SoxB_N Thermus thermophilus SoxB and related p	88.23
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	87.84
KOG2041	1189	consensus WD40 repeat protein [General function pr	87.82
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	86.97
COG3947	361	Response regulator containing CheY-like receiver a	86.44
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	86.29
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	86.25
PF06874	640	FBPase_2: Firmicute fructose-1,6-bisphosphatase; I	85.87
KOG2581	493	consensus 26S proteasome regulatory complex, subun	85.8
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	85.79
COG4455	273	ImpE Protein of avirulence locus involved in tempe	85.69
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	85.68
COG1768	230	Predicted phosphohydrolase [General function predi	85.3
COG3947	361	Response regulator containing CheY-like receiver a	84.98
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	84.5
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	84.12
cd00842	296	MPP_ASMase acid sphingomyelinase and related prote	83.38
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	83.16
COG4941	415	Predicted RNA polymerase sigma factor containing a	83.15
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	83.14
cd07406	257	MPP_CG11883_N Drosophila melanogaster CG11883 and	82.82
COG4455	273	ImpE Protein of avirulence locus involved in tempe	82.79
cd07409	281	MPP_CD73_N CD73 ecto-5'-nucleotidase and related p	82.74
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	82.33
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	82.09
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	81.89
KOG2041	1189	consensus WD40 repeat protein [General function pr	81.09
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	80.71
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	80.61
KOG2422	665	consensus Uncharacterized conserved protein [Funct	80.58

>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-77  Score=507.49  Aligned_cols=246  Identities=42%  Similarity=0.762  Sum_probs=238.2

Q ss_pred             HHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEcc
Q 014212          178 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG  257 (429)
Q Consensus       178 l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lG  257 (429)
                      +++.++.+.+...+.+.++..+|.++++++.++++++.+..|    +.|+||+||++.|++.+|+..|-+|.+ +|+|||
T Consensus         3 ldr~ie~L~~~~li~E~eV~~LC~~~~eiL~~E~NV~~i~tP----vtvcGDIHGQf~Dllelf~igG~~~~t-~YLFLG   77 (303)
T KOG0372|consen    3 LDRQIEQLRRCELIAESEVKALCAKVREILVEESNVQRIDTP----VTVCGDIHGQFYDLLELFRIGGDVPET-NYLFLG   77 (303)
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCCCceecCCC----cEEeecccchHHHHHHHHHhCCCCCCC-ceEeec
Confidence            677888999999999999999999999999999999999988    999999999999999999998877766 599999


Q ss_pred             ccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccc-hHHHHHHHHHhccCcccceecCeEE
Q 014212          258 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLS-ETFVELFAEVFCCLPLAHVLNQKVF  336 (429)
Q Consensus       258 D~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~lp~~~~~~~~~~  336 (429)
                      ||||||..|+|++.+|+.||++||++|++||||||++.++..|||++||.+||+ ..+|+.+++.|+.||++|+|+++||
T Consensus        78 DyVDRG~~SvEt~lLLl~lK~rYP~ritLiRGNHEsRqitqvYGFY~EclrKYG~~~vWr~c~eiFdyL~l~aiid~kif  157 (303)
T KOG0372|consen   78 DYVDRGYYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSANVWRYCTEIFDYLSLAAIIDGKIF  157 (303)
T ss_pred             chhccccchHHHHHHHHHHhhcCcceeEEeeccchhhhhhhhhhHHHHHHHHcCChHHHHHHHHHHHhhhHhheecCcEE
Confidence            999999999999999999999999999999999999999999999999999995 6899999999999999999999999


Q ss_pred             EEecCccCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCCCcEEE----------------EEeeccc
Q 014212          337 VVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF----------------VVRSHEV  400 (429)
Q Consensus       337 ~vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~~~~~~~~~~~~~~~----------------iir~h~~  400 (429)
                      |||||+ ||.++++++|+.++|.++.|+++.++|+|||||.+..||..|+||+|..|                |+|+||.
T Consensus       158 CVHGGl-SP~i~~lDqIr~lDR~~Eiph~g~m~DllWSDPee~~g~~~SPRGaGylFG~dvv~~F~~~N~~~~I~RaHQL  236 (303)
T KOG0372|consen  158 CVHGGL-SPSIQTLDQIRVLDRKQEVPHDGAMCDLLWSDPEEGPGWGLSPRGAGYLFGEDVVESFLEANGLSLICRAHQL  236 (303)
T ss_pred             EEcCCC-CcchhhHHHHHHhhccccCCCCCcchheeccCcccCCCcccCCCCccccccHHHHHHHHHhCChHHHHHHHHH
Confidence            999999 99999999999999999999999999999999999999999999999999                9999999


Q ss_pred             cccCceeecCCeEEEEcCCCCCCCcCCCC
Q 014212          401 KDEGYEIEHDGKLITVFSAPNYCDQVTKL  429 (429)
Q Consensus       401 ~~~g~~~~~~~~~~t~fs~~~y~~~~~n~  429 (429)
                      +++||++.|+++|+|||||||||++++|+
T Consensus       237 v~eGyk~~F~~~v~TVWSAPNYCYrCGN~  265 (303)
T KOG0372|consen  237 VMEGYKWHFDEKVVTVWSAPNYCYRCGNV  265 (303)
T ss_pred             HHhhHHHhcCCceEEEecCCchhhhcCCh
Confidence            99999999999999999999999999994

>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=100.00  E-value=5.5e-71  Score=460.73  Aligned_cols=246  Identities=39%  Similarity=0.703  Sum_probs=238.1

Q ss_pred             HHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEc
Q 014212          177 FVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFN  256 (429)
Q Consensus       177 ~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~l  256 (429)
                      .++++++..++.+.+++.++..+|+..++++..+.+++-++.|    +.|+|||||++.||+++|+..|-.|+. .|||+
T Consensus         5 d~d~wi~~vk~ckyLpE~elk~LCe~v~d~L~eEsNvqPV~tP----VTvCGDIHGQFyDL~eLFrtgG~vP~t-nYiFm   79 (306)
T KOG0373|consen    5 DLDQWIETVKKCKYLPENELKRLCEMVKDILMEESNVQPVSTP----VTVCGDIHGQFYDLLELFRTGGQVPDT-NYIFM   79 (306)
T ss_pred             CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCccccCCC----eeEeeccchhHHHHHHHHHhcCCCCCc-ceEEe
Confidence            4788999999999999999999999999999999999988877    999999999999999999999888766 49999


Q ss_pred             cccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccc-hHHHHHHHHHhccCcccceecCeE
Q 014212          257 GDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLS-ETFVELFAEVFCCLPLAHVLNQKV  335 (429)
Q Consensus       257 GD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~lp~~~~~~~~~  335 (429)
                      |||||||..|+|++.+|+.||.+||.++.+||||||++.++..|||++||..||+ .+.|+.+.++|+.|+++|+|++++
T Consensus        80 GDfVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHEsRqitqVYGFydECq~KYGnan~wkycckVFD~LtlaAiID~~v  159 (306)
T KOG0373|consen   80 GDFVDRGYYSLETFTLLLLLKARYPAKITLLRGNHESRQITQVYGFYDECQNKYGNANVWKYCCKVFDFLTLAAIIDEKV  159 (306)
T ss_pred             ccccccccccHHHHHHHHHHhhcCCceeEEeeccchhhhhhhhhhhHHHHHhhcCCchHHHHHHHHHhhhhHHHHhcCcE
Confidence            9999999999999999999999999999999999999999999999999999995 689999999999999999999999


Q ss_pred             EEEecCccCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCCCcEEE----------------EEeecc
Q 014212          336 FVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF----------------VVRSHE  399 (429)
Q Consensus       336 ~~vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~~~~~~~~~~~~~~~----------------iir~h~  399 (429)
                      +|||||+ ||++.++++|+.+.|.++.|.++.+|||+||||.+.+.|..|+||+|+.|                |.|+||
T Consensus       160 LCVHGGL-SPdirtlDqir~i~R~qEiPh~G~fcDlmWSDPedve~W~vSpRGAGwlFGskVt~eF~~iN~L~LicRaHQ  238 (306)
T KOG0373|consen  160 LCVHGGL-SPDIRTLDQIRLIERNQEIPHEGPFCDLMWSDPEDVETWAVSPRGAGWLFGSKVTTEFNHINNLNLICRAHQ  238 (306)
T ss_pred             EEEcCCC-CccceeHHHHHhHHhhccCCCCCCccceeccChhhhhhheeCCCCcceeechhhhHHHHhccchHHHHhHHH
Confidence            9999999 99999999999999999999999999999999999999999999999999                899999


Q ss_pred             ccccCceeecCCe-EEEEcCCCCCCCcCCC
Q 014212          400 VKDEGYEIEHDGK-LITVFSAPNYCDQVTK  428 (429)
Q Consensus       400 ~~~~g~~~~~~~~-~~t~fs~~~y~~~~~n  428 (429)
                      .+.+||++.|+.| ++|||||||||++++|
T Consensus       239 LV~EG~KymF~eK~lvTVWSAPNYCYRCGN  268 (306)
T KOG0373|consen  239 LVQEGFKYMFDEKGLVTVWSAPNYCYRCGN  268 (306)
T ss_pred             HHHhhHHhccCCCCEEEEecCCchhhhccC
Confidence            9999999999998 9999999999999998

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=100.00  E-value=4.2e-68  Score=496.76  Aligned_cols=417  Identities=63%  Similarity=1.074  Sum_probs=392.1

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   92 (429)
                      .+..+...|+.++..++|+.|+..|.+|++++|+.+..+.+++.++.+.+++..|+..+.+|++.+|+...+|++.|.+.
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~   82 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV   82 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence            35567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCcccccccccc-ccccccc-cCCCCCCCcccC
Q 014212           93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADS-IDYQSIE-VEPQYSGARIEG  170 (429)
Q Consensus        93 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~-~~~~~l~-~~~~~~~~~~~~  170 (429)
                      ..++++.+|...|++...+.|+.+.+...+.+|.....+.+|++|+........+.... ++..... +...+.+..+..
T Consensus        83 m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~~~~d~~s~~~~~~~~~~~~~i~~~y~g~~le~  162 (476)
T KOG0376|consen   83 MALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAILTPEGDKKSVVEMKIDEEDMDLIESDYSGPVLED  162 (476)
T ss_pred             HhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccCCccCCccccccccccccccccccccCCccccc
Confidence            99999999999999999999999999999999999999988999988766333332222 3333333 566778888877


Q ss_pred             CCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCC
Q 014212          171 DVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEE  250 (429)
Q Consensus       171 ~~l~~~~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~  250 (429)
                      ..++++++..+++.+..+..++.+.+..++..+...+...|+.+++..+....+.++||.||++.++.++++..|.|+..
T Consensus       163 ~kvt~e~vk~~~~~~~~~~~L~~k~a~~i~~~~~~~~~~l~~~ve~~~~~d~~~sv~gd~hGqfydl~nif~l~g~Ps~t  242 (476)
T KOG0376|consen  163 HKVTLEFVKTLMEVFKNQKKLPKKYAYSILDLAKTILRKLPSLVEISVPGDVKISVCGDTHGQFYDLLNIFELNGLPSET  242 (476)
T ss_pred             chhhHHHHHHHHHhhhcccccccccceeeHHHHhhHHhcCCcceEeecCCCceEEecCCccccccchhhhHhhcCCCCCc
Confidence            66999999999999999999999999999999999999999999999888899999999999999999999999999999


Q ss_pred             CCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccchHHHHHHHHHhccCcccce
Q 014212          251 NPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHV  330 (429)
Q Consensus       251 ~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~  330 (429)
                      ..|+|.||+||||..|.|++..++..|+.+|+++|++|||||+..|+..|||.+++..+|.++.+..+.++|..||++..
T Consensus       243 ~~ylfngdfv~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~~kyte~~~~~f~~~f~~LPl~~~  322 (476)
T KOG0376|consen  243 NPYLFNGDFVDRGSWSVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVKAKYTEEMFNLFSEVFIWLPLAHL  322 (476)
T ss_pred             ccccccCceeeecccceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchhhhhHHHHHHhhhhhhccccchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCeEEEEecCccCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCCCcEEE----------------E
Q 014212          331 LNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF----------------V  394 (429)
Q Consensus       331 ~~~~~~~vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~~~~~~~~~~~~~~~----------------i  394 (429)
                      |+++++.+|||+|+++..+++||++|.|+..|++++.+|++|||||....|.++|.||.|+.|                |
T Consensus       323 i~~~~~~~hgglf~~~~v~l~d~r~i~r~~~~~~~~~~~~~lws~pq~~~g~s~S~r~~g~~fG~d~t~~f~~~n~l~~i  402 (476)
T KOG0376|consen  323 INNKVLVMHGGLFSPDGVTLEDFRNIDRFEQPPEEGLMCELLWSDPQPANGRSPSKRGVGLQFGPDVTERFLQDNNLDKI  402 (476)
T ss_pred             hcCceEEEecCcCCCCCccHHHHHhhhhccCCcccccccccccCCCccccCCCccccCceeeeCCCchhhHHhhcchHHH
Confidence            999999999999999999999999999999999999999999999999999999999999998                9


Q ss_pred             EeeccccccCceeecCCeEEEEcCCCCCCCcCCCC
Q 014212          395 VRSHEVKDEGYEIEHDGKLITVFSAPNYCDQVTKL  429 (429)
Q Consensus       395 ir~h~~~~~g~~~~~~~~~~t~fs~~~y~~~~~n~  429 (429)
                      ||||++.+.||++.|+|+|+|||||||||..++|+
T Consensus       403 ~rshe~~d~gy~~eh~g~l~tvfsapnycd~~~n~  437 (476)
T KOG0376|consen  403 IRSHEVKDEGYEVEHSGKLITVFSAPNYCDQMGNK  437 (476)
T ss_pred             hhccccCCCceeeecCCcEEEEecCcchhhhcCCc
Confidence            99999999999999999999999999999999995

>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain

Probab=100.00  E-value=5.7e-67  Score=486.38  Aligned_cols=266  Identities=71%  Similarity=1.227  Sum_probs=252.5

Q ss_pred             CCCcccCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHH
Q 014212          164 SGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFEL  243 (429)
Q Consensus       164 ~~~~~~~~~l~~~~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~  243 (429)
                      .++++....++.+.++.+++.+.+...++..++.++|.++.+++.++|+++++..|...+++|+||+||++.+|.++|+.
T Consensus         2 ~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~ep~l~~i~~p~~~~~~VvGDIHG~~~dL~~ll~~   81 (316)
T cd07417           2 DGPRLEDEKVTLEFVKEMIEWFKDQKKLHKKYAYQILLQVKELLKKLPSLVEITIPEGEKITVCGDTHGQFYDLLNIFEL   81 (316)
T ss_pred             CCcccCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhCCcceeccCCCCceeEEeecccCCHHHHHHHHHh
Confidence            45666666689999999999999999999999999999999999999999999877667799999999999999999999


Q ss_pred             cCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccchHHHHHHHHHhc
Q 014212          244 NGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFC  323 (429)
Q Consensus       244 ~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (429)
                      .++++.+++|+|||||||||++|+||+.+++++|+.+|++|++||||||.+.++..|||..|+..+|+..+|+.+.++|+
T Consensus        82 ~g~~~~~~~ylFLGDyVDRG~~S~Evl~ll~~lki~~p~~v~lLRGNHE~~~~~~~~gf~~e~~~k~~~~l~~~~~~~f~  161 (316)
T cd07417          82 NGLPSETNPYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETDNMNKMYGFEGEVKAKYNEQMFDLFSEVFN  161 (316)
T ss_pred             cCCCCccCeEEEEeeEecCCCChHHHHHHHHHhhhccCCceEEEeeccchHHHHHHhhhcchhhhcccHHHHHHHHHHHH
Confidence            99988777899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccceecCeEEEEecCccCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCCCcEEE----------
Q 014212          324 CLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF----------  393 (429)
Q Consensus       324 ~lp~~~~~~~~~~~vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~~~~~~~~~~~~~~~----------  393 (429)
                      +||+++++++++||||||||++...++++|++++|+.+++.+++++|+|||||....++.+|+||.|+.|          
T Consensus       162 ~LPlaaii~~~~~~vHgGi~~~~~~~l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~s~Rg~g~~fg~~~~~~Fl~  241 (316)
T cd07417         162 WLPLAHLINGKVLVVHGGLFSDDGVTLDDIRKIDRFRQPPDSGLMCELLWSDPQPQPGRSPSKRGVGCQFGPDVTKRFLE  241 (316)
T ss_pred             hchHhheeCCeEEEEccccccCCCccHHHhhcccCCCCCCccccceeeeecCCCCCCCCCccCCCCceEeCHHHHHHHHH
Confidence            9999999999999999999777889999999999999999999999999999998889999999999988          


Q ss_pred             ------EEeeccccccCceeecCCeEEEEcCCCCCCCcCCCC
Q 014212          394 ------VVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQVTKL  429 (429)
Q Consensus       394 ------iir~h~~~~~g~~~~~~~~~~t~fs~~~y~~~~~n~  429 (429)
                            ||||||++++||++.++++|+||||||||||.++|+
T Consensus       242 ~n~l~~iiR~He~~~~G~~~~~~~~~~TvfSa~~Y~~~~~N~  283 (316)
T cd07417         242 ENNLEYIIRSHEVKDEGYEVEHDGKCITVFSAPNYCDQMGNK  283 (316)
T ss_pred             HcCCcEEEECCcccceeEEEecCCeEEEEeCCccccCCCCcc
Confidence                  999999999999999999999999999999999985

Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel

>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain

Probab=100.00  E-value=7e-67  Score=483.90  Aligned_cols=255  Identities=44%  Similarity=0.794  Sum_probs=233.7

Q ss_pred             CCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCC
Q 014212          173 ITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENP  252 (429)
Q Consensus       173 l~~~~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~  252 (429)
                      ++++.++.+++.+.+...+++.++..+|.+++++|.++|+++++..+...+++|+||+||++.+|.++|+..|+++..++
T Consensus         2 ~~~~~~~~~i~~~~~~~~l~~~~i~~L~~~a~~il~~ep~vl~i~~~~~~~~~vvGDiHG~~~dL~~il~~~g~~~~~~~   81 (321)
T cd07420           2 LTKDHIDALIEAFKEKQLLHAKYVLLILREARKVLKQLPNISRVSTSISKQVTICGDLHGKLDDLFLIFYKNGLPSPENP   81 (321)
T ss_pred             CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhCCCEEEecCCCCCCeEEEEeCCCCHHHHHHHHHHcCCCCccce
Confidence            57788999999999999999999999999999999999999999876566799999999999999999999998877678


Q ss_pred             eEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccc---hHHHHHHHHHhccCcccc
Q 014212          253 YLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLS---ETFVELFAEVFCCLPLAH  329 (429)
Q Consensus       253 ~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~lp~~~  329 (429)
                      |+|||||||||++|+||+.+|++||+.+|++|++||||||.+.++..|||..|+..+|+   ..+|+.+.++|++||++|
T Consensus        82 ~lFLGDyVDRG~~s~Evl~ll~~lk~~~p~~v~llRGNHE~~~~~~~yGf~~e~~~~y~~~~~~l~~~~~~~F~~LPlaa  161 (321)
T cd07420          82 YVFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDHIMNLRYGFTKEVMSKYKLHGKKILRLLEDVFSWLPLAT  161 (321)
T ss_pred             EEEeccccCCCCCcHHHHHHHHHHhhcCCCcEEEecCchhhhhhhhhcChHHHHHHHhCccHHHHHHHHHHHHHhCCceE
Confidence            99999999999999999999999999999999999999999999999999999999997   789999999999999999


Q ss_pred             eecCeEEEEecCccCCCCCCccccccccCCC-----CCCC----------------------CCcccccccCCCCCCCC-
Q 014212          330 VLNQKVFVVHGGLFSVDGVKLSDIKTIDRFC-----EPPE----------------------EGLMCELLWSDPQPLPG-  381 (429)
Q Consensus       330 ~~~~~~~~vH~gi~~~~~~~~~~i~~~~r~~-----~~~~----------------------~~~~~~~lw~dp~~~~~-  381 (429)
                      +|++++||||||| ++ ..++++|+.++|+.     .|+.                      .++++|+|||||....+ 
T Consensus       162 ii~~~i~cvHGGi-~~-~~~l~~i~~i~r~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLWSDP~~~~~~  239 (321)
T cd07420         162 IIDNKILVVHGGI-SD-STDLDLLDKIDRHKYVSVLRPPLRKGMEELTGEEEDPSEPLDKTEWRQILDILWSDPKAQKGC  239 (321)
T ss_pred             EEcCCEEEEeCCC-CC-ccCHHHHHhhhccccccccCCCccccccccccccccccccccccccchhheeeecCCccCCCC
Confidence            9999999999999 54 57899999998852     1222                      14688999999997766 


Q ss_pred             CCCCCCCCcEEE----------------EEeeccccccCceeecCCeEEEEcCCCCCCCcCCCC
Q 014212          382 RGPSKRGVGLSF----------------VVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQVTKL  429 (429)
Q Consensus       382 ~~~~~~~~~~~~----------------iir~h~~~~~g~~~~~~~~~~t~fs~~~y~~~~~n~  429 (429)
                      +.+++||.|+.|                ||||||++++||++.++++|+||||||||||.++|+
T Consensus       240 ~~~~~RG~g~~FG~~~~~~Fl~~n~l~~IIR~He~v~~G~~~~~~~~~iTvFSa~nY~~~~~N~  303 (321)
T cd07420         240 KPNTFRGGGCYFGPDVTSKVLQKHGLSLLIRSHECKPEGYEFCHNNKVITIFSASNYYEEGSNR  303 (321)
T ss_pred             CccCCCCCccccCHHHHHHHHHHCCCcEEEEcChhhhcceEEecCCeEEEEecCCccCCCCCcc
Confidence            456789999988                999999999999999999999999999999998885

RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all

>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain

Probab=100.00  E-value=6.4e-64  Score=460.59  Aligned_cols=246  Identities=43%  Similarity=0.783  Sum_probs=233.2

Q ss_pred             HHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEcc
Q 014212          178 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG  257 (429)
Q Consensus       178 l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lG  257 (429)
                      ++.+++.+.+...++.+++..+|+++.+++.++|.++++..+    +.++||+||++.+|.++|+..++++. +.|+|||
T Consensus         2 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~e~~~~~i~~~----i~vvGDIHG~~~dL~~ll~~~~~~~~-~~~lfLG   76 (285)
T cd07415           2 LDKWIEQLKKCELLPESEVKSLCEKAKEILVKESNVQRVRSP----VTVCGDIHGQFYDLLELFRVGGDPPD-TNYLFLG   76 (285)
T ss_pred             HHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhCCCEEecCCC----EEEEEeCCCCHHHHHHHHHHcCCCCC-CeEEEEe
Confidence            466788888888999999999999999999999999998765    99999999999999999999988765 4699999


Q ss_pred             ccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccch-HHHHHHHHHhccCcccceecCeEE
Q 014212          258 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSE-TFVELFAEVFCCLPLAHVLNQKVF  336 (429)
Q Consensus       258 D~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lp~~~~~~~~~~  336 (429)
                      ||||||++|+||+.+++++|+.+|.++++||||||.+.++..|||..|+..+|+. .+|..+.++|+.||++|++++++|
T Consensus        77 DyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~ygf~~e~~~~y~~~~l~~~~~~~f~~lPlaaii~~~i~  156 (285)
T cd07415          77 DYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHESRQITQVYGFYDECLRKYGNANVWKYCTDLFDYLPLAALIDNQIF  156 (285)
T ss_pred             EECCCCcCHHHHHHHHHHHhhcCCCcEEEEecccchHhhhhhcchhHHHHHhcCchHHHHHHHHHHHHhHHHhEeCCeEE
Confidence            9999999999999999999999999999999999999999999999999999974 899999999999999999999999


Q ss_pred             EEecCccCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCCCcEEE----------------EEeeccc
Q 014212          337 VVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF----------------VVRSHEV  400 (429)
Q Consensus       337 ~vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~~~~~~~~~~~~~~~----------------iir~h~~  400 (429)
                      |||||| +|...++++|+.++||.+++.+++++|+|||||....++.+++||.|+.|                ||||||+
T Consensus       157 cvHgGi-~p~~~~~~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~He~  235 (285)
T cd07415         157 CVHGGL-SPSIDTLDQIRAIDRFQEVPHEGPMCDLLWSDPDDIEGWGISPRGAGYLFGQDVVEEFNHNNGLTLICRAHQL  235 (285)
T ss_pred             EEcCCC-CCCcccHHHhhcccCCCCCCCCCCccceEecCCCccCCCCcCCCCCccccCHHHHHHHHHHCCCeEEEEcCcc
Confidence            999999 88999999999999999999999999999999998889999999999988                9999999


Q ss_pred             cccCceeecCCeEEEEcCCCCCCCcCCCC
Q 014212          401 KDEGYEIEHDGKLITVFSAPNYCDQVTKL  429 (429)
Q Consensus       401 ~~~g~~~~~~~~~~t~fs~~~y~~~~~n~  429 (429)
                      +++||++.++++|+|||||||||+.++|+
T Consensus       236 ~~~G~~~~~~~~~~TvfSa~~y~~~~~n~  264 (285)
T cd07415         236 VMEGYQWMFDDKLVTVWSAPNYCYRCGNV  264 (285)
T ss_pred             ccceEEEecCCcEEEEecCCcccCCCCce
Confidence            99999999999999999999999998885

PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2

>PTZ00480 serine/threonine-protein phosphatase; Provisional

Probab=100.00  E-value=7.8e-64  Score=462.64  Aligned_cols=234  Identities=41%  Similarity=0.829  Sum_probs=223.4

Q ss_pred             CCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHH
Q 014212          190 CLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEV  269 (429)
Q Consensus       190 ~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~  269 (429)
                      .+.++++..+|.++.+++.++|.++++..+    +.++||+||++.+|.++|+..++++.. .|+|||||||||++|+||
T Consensus        31 ~l~~~~i~~l~~~~~~il~~ep~ll~i~~~----i~vvGDIHG~~~dL~~l~~~~g~~~~~-~ylfLGDyVDRG~~s~ev  105 (320)
T PTZ00480         31 NLTEAEVRGLCIKARDIFISQPILLELEAP----LKICGDVHGQYFDLLRLFEYGGYPPES-NYLFLGDYVDRGKQSLET  105 (320)
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCceEecCCC----eEEEeecccCHHHHHHHHHhcCCCCcc-eEEEeceecCCCCCcHHH
Confidence            578899999999999999999999998765    999999999999999999999988754 699999999999999999


Q ss_pred             HHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccchHHHHHHHHHhccCcccceecCeEEEEecCccCCCCCC
Q 014212          270 ILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVK  349 (429)
Q Consensus       270 ~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~vH~gi~~~~~~~  349 (429)
                      +.+++++|+.+|++|++||||||.+.++..|||..|+..+|+..+|..++++|..||++|+|++++||||||| +|...+
T Consensus       106 l~ll~~lki~~p~~v~llRGNHE~~~~~~~ygF~~e~~~~y~~~l~~~~~~~F~~LPlaAiI~~~i~cvHGGI-~p~~~~  184 (320)
T PTZ00480        106 ICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYTIKLWKTFTDCFNCLPVAALIDEKILCMHGGL-SPELSN  184 (320)
T ss_pred             HHHHHHhcccCCCceEEEecccchhhhhhhcchHHHHHhhcCHHHHHHHHHHHHhccHhheecCcEEEEcCCc-CcccCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999 888999


Q ss_pred             ccccccccCCCCCCCCCcccccccCCCCCC-CCCCCCCCCCcEEE----------------EEeeccccccCceeecCCe
Q 014212          350 LSDIKTIDRFCEPPEEGLMCELLWSDPQPL-PGRGPSKRGVGLSF----------------VVRSHEVKDEGYEIEHDGK  412 (429)
Q Consensus       350 ~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~-~~~~~~~~~~~~~~----------------iir~h~~~~~g~~~~~~~~  412 (429)
                      +++|+.++||.+.+.+++++|+|||||... .+|.+++||.|+.|                ||||||++++||++.++++
T Consensus       185 l~~i~~i~rp~~~~~~~~~~dllWSDP~~~~~~~~~s~RG~g~~FG~~~~~~Fl~~n~l~~IiR~Hq~v~~G~~~~~~~~  264 (320)
T PTZ00480        185 LEQIRRIMRPTDVPDTGLLCDLLWSDPDKDVQGWADNERGVSYVFSQEIVQVFLKKHELDLICRAHQVVEDGYEFFSKRQ  264 (320)
T ss_pred             HHHHhcccCCCCCCccchhhheeecCcccccCCCccCCCCCccccCHHHHHHHHHhCCCcEEEEcCccccCceEEeCCCc
Confidence            999999999999999999999999999864 68999999999988                9999999999999999999


Q ss_pred             EEEEcCCCCCCCcCCCC
Q 014212          413 LITVFSAPNYCDQVTKL  429 (429)
Q Consensus       413 ~~t~fs~~~y~~~~~n~  429 (429)
                      |+||||||||||.++|+
T Consensus       265 ~iTvFSa~~Y~~~~~N~  281 (320)
T PTZ00480        265 LVTLFSAPNYCGEFDNA  281 (320)
T ss_pred             EEEEeCCcccCCCCCcc
Confidence            99999999999998885

>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=2e-64  Score=467.90  Aligned_cols=232  Identities=43%  Similarity=0.845  Sum_probs=224.0

Q ss_pred             CcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcC-CCCCCCCeEEccccccCCCCcHHH
Q 014212          191 LHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNG-LPSEENPYLFNGDFVDRGSFSVEV  269 (429)
Q Consensus       191 l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~-~~~~~~~~~~lGD~vdrG~~s~e~  269 (429)
                      +.+.++..++..+.+++..+|.+++++.|    +.|+||+||++.+|+++|...| +|+.. +|+|||||||||++|+|+
T Consensus        32 l~~~ei~~l~~~~~~if~~~~~l~e~~aP----V~i~GDiHGq~~DLlrlf~~~g~~pp~~-~ylFLGDYVDRG~~slE~  106 (331)
T KOG0374|consen   32 LSKSEIIKLCDKAREIFLSQPTLLELSAP----VKIVGDIHGQFGDLLRLFDLLGSFPPDQ-NYVFLGDYVDRGKQSLET  106 (331)
T ss_pred             ccHHHHHHHHHHHHHHhcCCCceeecCCC----EEEEccCcCCHHHHHHHHHhcCCCCCcc-cEEEecccccCCccceEE
Confidence            67788999999999999999999999987    9999999999999999999999 88655 699999999999999999


Q ss_pred             HHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccc-hHHHHHHHHHhccCcccceecCeEEEEecCccCCCCC
Q 014212          270 ILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLS-ETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGV  348 (429)
Q Consensus       270 ~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~lp~~~~~~~~~~~vH~gi~~~~~~  348 (429)
                      +.+|+++|+.||++|++||||||.+.++..|||++||.++|+ ..+|..|++.|.+||++++|+++|+|+|||| ||...
T Consensus       107 i~LL~a~Ki~yp~~~~lLRGNHE~~~in~~yGFydE~~rr~~~~~~w~~F~~~f~~mp~~a~i~~kI~CmhGGl-sp~l~  185 (331)
T KOG0374|consen  107 ICLLFALKIKYPENVFLLRGNHECASINRIYGFYDECKRRYGEIKLWKAFNDAFNCLPLAALIDGKILCMHGGL-SPHLK  185 (331)
T ss_pred             eehhhhhhhhCCceEEEeccccccccccceeeeHHHHHHhcchHHHHHHHHHHHhhCchhheecceEEEecCCC-Chhhc
Confidence            999999999999999999999999999999999999999998 6999999999999999999999999999999 99999


Q ss_pred             CccccccccCCCCCCCCCcccccccCCCCCC-CCCCCCCCCCcEEE----------------EEeeccccccCceeecCC
Q 014212          349 KLSDIKTIDRFCEPPEEGLMCELLWSDPQPL-PGRGPSKRGVGLSF----------------VVRSHEVKDEGYEIEHDG  411 (429)
Q Consensus       349 ~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~-~~~~~~~~~~~~~~----------------iir~h~~~~~g~~~~~~~  411 (429)
                      ++++|+.|.||.++++.++++|||||||... .||.++.||.++.|                |||+||++.+||+++.++
T Consensus       186 ~~~~i~~i~rp~~~~~~gll~DLlWsdp~~~~~g~~~n~Rg~s~~fg~~~v~~f~~~~~ldlivRaHqvv~dGyeffa~r  265 (331)
T KOG0374|consen  186 SLDQIRAIPRPTDSPDKGLLCDLLWSDPDDDVPGWEENDRGVSFTFGPAVVEDFCKKLDLDLIVRAHQVVEDGYEFFAGR  265 (331)
T ss_pred             ChHHHhhccCCcCCCccceeeeeeecCCCCCCCCcccCCCceeeEecHHHHHHHHHHhCcceEEEcCccccccceEecCc
Confidence            9999999999999999999999999999886 79999999999888                999999999999999999


Q ss_pred             eEEEEcCCCCCCCcCCC
Q 014212          412 KLITVFSAPNYCDQVTK  428 (429)
Q Consensus       412 ~~~t~fs~~~y~~~~~n  428 (429)
                      +++||||||+|||.+.|
T Consensus       266 ~lvTIFSAP~Ycg~~~n  282 (331)
T KOG0374|consen  266 KLVTIFSAPNYCGEFDN  282 (331)
T ss_pred             eEEEEecCchhccccCC
Confidence            99999999999999988

>PTZ00239 serine/threonine protein phosphatase 2A; Provisional

Probab=100.00  E-value=2.5e-63  Score=458.66  Aligned_cols=246  Identities=39%  Similarity=0.710  Sum_probs=231.2

Q ss_pred             HHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEcc
Q 014212          178 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG  257 (429)
Q Consensus       178 l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lG  257 (429)
                      ++.+++.+.+...++++++..+|+++++++.++|.++++..+    +.|+||+||++.++.++|+..+.++. +.|+|||
T Consensus         3 ~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~e~~~~~i~~~----i~vvGDIHG~~~~L~~l~~~~~~~~~-~~~lfLG   77 (303)
T PTZ00239          3 IDRHIATLLNGGCLPERDLKLICERAKEIFLEESNVQPVRAP----VNVCGDIHGQFYDLQALFKEGGDIPN-ANYIFIG   77 (303)
T ss_pred             HHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhCCCeEecCCC----EEEEEeCCCCHHHHHHHHHhcCCCCC-ceEEEee
Confidence            567788888888999999999999999999999999998765    99999999999999999999887764 4699999


Q ss_pred             ccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccch-HHHHHHHHHhccCcccceecCeEE
Q 014212          258 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSE-TFVELFAEVFCCLPLAHVLNQKVF  336 (429)
Q Consensus       258 D~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lp~~~~~~~~~~  336 (429)
                      ||||||++|+||+.+++++|+.+|.++++||||||.+.++..|||..|+..+|+. .+|+.+.++|+.||+++++++++|
T Consensus        78 DyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~ky~~~~~~~~~~~~f~~LPlaaii~~~i~  157 (303)
T PTZ00239         78 DFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHESRQCTQVYGFYEEILRKYGNSNPWRLFMDVFDCLPLAALIEGQIL  157 (303)
T ss_pred             eEcCCCCCHHHHHHHHHHhhhcCCCcEEEEecccchHHHhhhcChHHHHHHHhcChhHHHHHHHHHHhCchheEEcCeEE
Confidence            9999999999999999999999999999999999999999999999999999964 799999999999999999999999


Q ss_pred             EEecCccCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCCCcEEE----------------EEeeccc
Q 014212          337 VVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF----------------VVRSHEV  400 (429)
Q Consensus       337 ~vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~~~~~~~~~~~~~~~----------------iir~h~~  400 (429)
                      |||||| +|...++++|+.++||.+++.++.++|+|||||....++.+++||.|+.|                ||||||+
T Consensus       158 cvHgGi-~p~~~~l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~He~  236 (303)
T PTZ00239        158 CVHGGL-SPDMRTIDQIRTIDRKIEIPHEGPFCDLMWSDPEEVEYWAVNSRGAGYLFGAKVTKEFCRLNDLTLICRAHQL  236 (303)
T ss_pred             EEcCcc-CcccccHhhhccccCCCCCCCCCCceeeEecCccccCCCccCCCCCccccCHHHHHHHHHHCCCcEEEEcChh
Confidence            999999 88999999999999999999999999999999998889999999999988                9999999


Q ss_pred             cccCceeecCC-eEEEEcCCCCCCCcCCCC
Q 014212          401 KDEGYEIEHDG-KLITVFSAPNYCDQVTKL  429 (429)
Q Consensus       401 ~~~g~~~~~~~-~~~t~fs~~~y~~~~~n~  429 (429)
                      +++||++.+++ +|+|||||||||+.++|+
T Consensus       237 ~~~G~~~~~~~~~~iTvfSa~~Y~~~~~N~  266 (303)
T PTZ00239        237 VMEGYKYWFPDQNLVTVWSAPNYCYRCGNI  266 (303)
T ss_pred             hccceEEEeCCCeEEEEECCCcccCCCCce
Confidence            99999988755 599999999999999885

>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]

Probab=100.00  E-value=1.9e-64  Score=449.76  Aligned_cols=247  Identities=41%  Similarity=0.774  Sum_probs=231.2

Q ss_pred             HHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEc
Q 014212          177 FVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFN  256 (429)
Q Consensus       177 ~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~l  256 (429)
                      ..+-+.+++.+.++++++.+..++.++..+++++++++++..|    +.|||||||++.||+++|+..|-| ...+|+||
T Consensus        47 ~~~~Lr~Hf~~EGrl~ee~alrIi~~~a~llr~Eknmi~v~AP----iTVCGDIHGQf~DLmKLFEVGG~P-A~t~YLFL  121 (517)
T KOG0375|consen   47 RHDVLRNHFIKEGRLEEEQALRIINEGAALLRQEKNMIEVEAP----ITVCGDIHGQFFDLMKLFEVGGSP-ANTRYLFL  121 (517)
T ss_pred             chHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCCceEeccCC----eeEecccchHHHHHHHHHHccCCc-ccceeEee
Confidence            3566788899999999999999999999999999999999988    999999999999999999987765 45569999


Q ss_pred             cccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccchHHHHHHHHHhccCcccceecCeEE
Q 014212          257 GDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVF  336 (429)
Q Consensus       257 GD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~  336 (429)
                      |||||||.+|+||+.+|.+||+.+|+.+++||||||++-++.++.|..||..||++++|+.+.+.|++||+||+.++++|
T Consensus       122 GDYVDRGyFSiECvlYLwsLKi~yp~tl~lLRGNHECrHLT~YFTFKqEc~iKYse~vYdaCmesFd~LPLAAlmNqQfl  201 (517)
T KOG0375|consen  122 GDYVDRGYFSIECVLYLWSLKINYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMESFDCLPLAALMNQQFL  201 (517)
T ss_pred             ccccccceeeeehHHHHHHHhcCCCCeEEEecCCcchhhhHhHhhHHHHHhHhccHHHHHHHHHHhccchHHHHhcCceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCccCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCC-------C-CCCCCCCcEEE---------------
Q 014212          337 VVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPG-------R-GPSKRGVGLSF---------------  393 (429)
Q Consensus       337 ~vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~~~-------~-~~~~~~~~~~~---------------  393 (429)
                      |||||+ ||.+.+++||++++|+++||..+.+||||||||.+.-|       + .++.||+++.|               
T Consensus       202 CVHGGl-SPEi~tl~DIr~l~RF~EpPa~GpmCDLLWsDPlEdfgnek~~e~f~hNsvRGCSyfysy~A~C~FLq~nnLL  280 (517)
T KOG0375|consen  202 CVHGGL-SPEIHTLDDIRKLDRFKEPPAFGPMCDLLWSDPLEDFGNEKTSEHFTHNSVRGCSYFYSYPAVCEFLQNNNLL  280 (517)
T ss_pred             EecCCC-CcccccHHHHHhhhhccCCCccCcchhhhccChhhhccccccccccccCccccccceechHHHHHHHHhCCch
Confidence            999999 99999999999999999999999999999999986532       2 25689999887               


Q ss_pred             -EEeeccccccCceeecCC------eEEEEcCCCCCCCcCCCC
Q 014212          394 -VVRSHEVKDEGYEIEHDG------KLITVFSAPNYCDQVTKL  429 (429)
Q Consensus       394 -iir~h~~~~~g~~~~~~~------~~~t~fs~~~y~~~~~n~  429 (429)
                       |||+||.++.||+..-+.      .+|||||||||.+.++||
T Consensus       281 SIiRAHEAQDaGYRMYrksqttGFPSLiTiFSAPNYLDvYnNK  323 (517)
T KOG0375|consen  281 SIIRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNK  323 (517)
T ss_pred             hhhhhhhhhhhhhhhhhcccccCCchheeeecCCchhhhhccH
Confidence             999999999999987754      589999999999999996

>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional

Probab=100.00  E-value=1.5e-62  Score=452.27  Aligned_cols=234  Identities=41%  Similarity=0.810  Sum_probs=222.5

Q ss_pred             CCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHH
Q 014212          190 CLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEV  269 (429)
Q Consensus       190 ~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~  269 (429)
                      .++..++..+|.++.+++.++|.++++..|    +.|+||+||++.+|.++|+..++++.. .|+|||||||||++|+||
T Consensus        24 ~i~~~~i~~l~~~~~~il~~e~~ll~i~~p----~~ViGDIHG~~~~L~~l~~~~~~~~~~-~~lfLGDyVDRG~~s~ev   98 (294)
T PTZ00244         24 LIREEDIRAVLTEVREIFMSQPMLLEIRPP----VRVCGDTHGQYYDLLRIFEKCGFPPYS-NYLFLGDYVDRGKHSVET   98 (294)
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCCeEeccCC----ceeeccCCCCHHHHHHHHHHcCCCCcc-cEEEeeeEecCCCCHHHH
Confidence            467889999999999999999999999766    999999999999999999999987654 599999999999999999


Q ss_pred             HHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccchHHHHHHHHHhccCcccceecCeEEEEecCccCCCCCC
Q 014212          270 ILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVK  349 (429)
Q Consensus       270 ~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~vH~gi~~~~~~~  349 (429)
                      +.+++++|+.+|.+++++|||||.+.++..|||..++..+|+..+|+.+.++|+.||+++++++++||||||| +|...+
T Consensus        99 l~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~y~~~l~~~~~~~f~~lPlaaii~~~il~vHgGi-~p~~~~  177 (294)
T PTZ00244         99 ITLQFCYKIVYPENFFLLRGNHECASINKMYGFFDDVKRRYNIKLFKAFTDVFNTMPVCCVISEKIICMHGGL-SPDLTS  177 (294)
T ss_pred             HHHHHHHhhccCCeEEEEecccchHhHhhccChHHHHHHHhhHHHHHHHHHHHHhCchheEecCeeEEEcCCC-CchhhH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999 788899


Q ss_pred             ccccccccCCCCCCCCCcccccccCCCCCC-CCCCCCCCCCcEEE----------------EEeeccccccCceeecCCe
Q 014212          350 LSDIKTIDRFCEPPEEGLMCELLWSDPQPL-PGRGPSKRGVGLSF----------------VVRSHEVKDEGYEIEHDGK  412 (429)
Q Consensus       350 ~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~-~~~~~~~~~~~~~~----------------iir~h~~~~~g~~~~~~~~  412 (429)
                      +++|+.++||.+.+.+++++|+|||||... .+|.+++||.|+.|                ||||||++++||+++++++
T Consensus       178 l~~i~~i~rp~~~~~~~~~~dllWsDP~~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~Hq~~~~G~~~~~~~~  257 (294)
T PTZ00244        178 LASVNEIERPCDVPDRGILCDLLWADPEDEVRGFLESDRGVSYLFGEDIVNDFLDMVDMDLIVRAHQVMERGYGFFASRQ  257 (294)
T ss_pred             HHHhhhhccccCCCccchhheeeecCcccccCCCCcCCCCCccccCHHHHHHHHHHcCCcEEEEcCccccCceEEcCCCe
Confidence            999999999999899999999999999864 68899999999988                9999999999999999999


Q ss_pred             EEEEcCCCCCCCcCCCC
Q 014212          413 LITVFSAPNYCDQVTKL  429 (429)
Q Consensus       413 ~~t~fs~~~y~~~~~n~  429 (429)
                      |+||||||||||.++|+
T Consensus       258 ~iTvfSa~~Y~~~~~N~  274 (294)
T PTZ00244        258 LVTVFSAPNYCGEFDND  274 (294)
T ss_pred             EEEEeCCccccCCCCce
Confidence            99999999999998885

>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain

Probab=100.00  E-value=1.6e-62  Score=453.05  Aligned_cols=234  Identities=42%  Similarity=0.861  Sum_probs=222.8

Q ss_pred             CCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHH
Q 014212          190 CLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEV  269 (429)
Q Consensus       190 ~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~  269 (429)
                      .++++++..+|.++.+++.++|+++++..+    +.++||+||++.++.++|+..++++.. .|+|||||||||++|+||
T Consensus        22 ~~~~~~i~~l~~~~~~il~~ep~~l~i~~~----i~viGDIHG~~~~L~~l~~~~~~~~~~-~~lfLGDyVDRG~~s~e~   96 (293)
T cd07414          22 QLTEAEIRGLCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPES-NYLFLGDYVDRGKQSLET   96 (293)
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCCeEecCCc----eEEEEecCCCHHHHHHHHHhcCCCCcc-eEEEEeeEecCCCCcHHH
Confidence            578899999999999999999999998765    999999999999999999999987654 699999999999999999


Q ss_pred             HHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccchHHHHHHHHHhccCcccceecCeEEEEecCccCCCCCC
Q 014212          270 ILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVK  349 (429)
Q Consensus       270 ~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~vH~gi~~~~~~~  349 (429)
                      +.+++++|+.+|.++++||||||.+.++..|||..|+..+|+..+|..+.++|++||+++++++++||||||| +|...+
T Consensus        97 i~ll~~lk~~~p~~i~llrGNHE~~~~~~~~gf~~e~~~~y~~~l~~~~~~~f~~lPlaa~i~~~i~cvHgGi-~p~~~~  175 (293)
T cd07414          97 ICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPVAAIIDEKIFCMHGGL-SPDLQS  175 (293)
T ss_pred             HHHHHHhhhhCCCcEEEEecccchhhHhhhcchhhHHHHhhhHHHHHHHHHHHHHhHHHHhhCCcEEEEccCC-CcccCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999 889999


Q ss_pred             ccccccccCCCCCCCCCcccccccCCCCCC-CCCCCCCCCCcEEE----------------EEeeccccccCceeecCCe
Q 014212          350 LSDIKTIDRFCEPPEEGLMCELLWSDPQPL-PGRGPSKRGVGLSF----------------VVRSHEVKDEGYEIEHDGK  412 (429)
Q Consensus       350 ~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~-~~~~~~~~~~~~~~----------------iir~h~~~~~g~~~~~~~~  412 (429)
                      +++|+.++||.+++.+++++|+|||||... .+|.+|+||.|+.|                ||||||++++||++.++++
T Consensus       176 l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~  255 (293)
T cd07414         176 MEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGKDVVAKFLNKHDLDLICRAHQVVEDGYEFFAKRQ  255 (293)
T ss_pred             HHHHhcccCCCCCCchhhHhhhhccCcccccCCCccCCCCcceecCHHHHHHHHHHcCCeEEEECCccccCeEEEeCCCc
Confidence            999999999999999999999999999864 68899999999988                9999999999999999999


Q ss_pred             EEEEcCCCCCCCcCCCC
Q 014212          413 LITVFSAPNYCDQVTKL  429 (429)
Q Consensus       413 ~~t~fs~~~y~~~~~n~  429 (429)
                      |+||||||||||.++|+
T Consensus       256 ~iTvfSa~~Y~~~~~N~  272 (293)
T cd07414         256 LVTLFSAPNYCGEFDNA  272 (293)
T ss_pred             EEEEecCCcccCCCCce
Confidence            99999999999998885

PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg

>cd07416 MPP_PP2B PP2B, metallophosphatase domain

Probab=100.00  E-value=5e-62  Score=452.94  Aligned_cols=246  Identities=43%  Similarity=0.801  Sum_probs=229.6

Q ss_pred             HHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEcc
Q 014212          178 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG  257 (429)
Q Consensus       178 l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lG  257 (429)
                      ++-+++.+.+...++++++.++|.++++++.++|.++++..+    +.|+||+||++.+|.++|+..+.++. +.|+|||
T Consensus         3 ~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~e~~l~~i~~~----i~ViGDIHG~~~dL~~l~~~~g~~~~-~~ylFLG   77 (305)
T cd07416           3 IDVLKAHFMREGRLSEEDALRIITEGAEILRQEPNLLRIEAP----VTVCGDIHGQFYDLLKLFEVGGSPAN-TRYLFLG   77 (305)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCeEccCCC----EEEEEeCCCCHHHHHHHHHhcCCCCC-ceEEEEC
Confidence            456788888999999999999999999999999999999765    99999999999999999999887764 5699999


Q ss_pred             ccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccchHHHHHHHHHhccCcccceecCeEEE
Q 014212          258 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFV  337 (429)
Q Consensus       258 D~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~  337 (429)
                      ||||||++|+||+.+|+++|+.+|++|++||||||.+.++..|||..|+..+|+.++|..+.++|++||++++++++++|
T Consensus        78 DyVDRG~~s~Evi~lL~~lki~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~y~~~l~~~~~~~f~~LPlaaii~~~i~~  157 (305)
T cd07416          78 DYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMEAFDCLPLAALMNQQFLC  157 (305)
T ss_pred             CccCCCCChHHHHHHHHHHHhhcCCCEEEEeCCCcHHHHHHhhCchhHHHHhccHHHHHHHHHHHhhccceeEEcCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCccCCCCCCccccccccCCCCCCCCCcccccccCCCCCCC-------CCCC-CCCCCcEEE----------------
Q 014212          338 VHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLP-------GRGP-SKRGVGLSF----------------  393 (429)
Q Consensus       338 vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~~-------~~~~-~~~~~~~~~----------------  393 (429)
                      ||||| +|...++++|++++|+.+++.+++++|+|||||....       +|.+ ++||.|+.|                
T Consensus       158 vHGGi-~p~~~~l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~~~~~~~~~Rg~g~~fG~~~~~~Fl~~n~l~~  236 (305)
T cd07416         158 VHGGL-SPELKTLDDIRKLDRFREPPAFGPMCDLLWSDPLEDFGNEKTQEHFVHNTVRGCSYFYSYRAVCEFLQKNNLLS  236 (305)
T ss_pred             EcCCC-CcccccHHHhcccCCCCCCCCCCcceeeeecCcccccccccccccccccCCCCCceecCHHHHHHHHHHcCCeE
Confidence            99999 8899999999999999999999999999999997643       3555 489999988                


Q ss_pred             EEeeccccccCceeecCC------eEEEEcCCCCCCCcCCCC
Q 014212          394 VVRSHEVKDEGYEIEHDG------KLITVFSAPNYCDQVTKL  429 (429)
Q Consensus       394 iir~h~~~~~g~~~~~~~------~~~t~fs~~~y~~~~~n~  429 (429)
                      ||||||++++||++.+++      +||||||||||||.++|+
T Consensus       237 iiR~He~~~~G~~~~~~~~~~~~~~~iTvFSa~~Y~~~~~N~  278 (305)
T cd07416         237 IIRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNK  278 (305)
T ss_pred             EEEeccccccceEEecCCCcCCCCcEEEEeCCccccCCCCce
Confidence            999999999999999886      999999999999998885

PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G

>cd07418 MPP_PP7 PP7, metallophosphatase domain

Probab=100.00  E-value=2.3e-61  Score=452.80  Aligned_cols=257  Identities=40%  Similarity=0.732  Sum_probs=231.9

Q ss_pred             CCHHHHHHHHHHhhcc----------cCCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHH
Q 014212          173 ITLDFVKKMMDDFKNQ----------KCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFE  242 (429)
Q Consensus       173 l~~~~l~~li~~l~~~----------~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~  242 (429)
                      ++.+.++.|+..++..          ..++..++..+|.++.+++.++|+++++..+...+++|+||+||++.+|.++|+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~a~~il~~ep~ll~i~~~~~~~i~VvGDIHG~~~dL~~ll~   86 (377)
T cd07418           7 LTNEWVHELMSVFEWSSRNLPPSELPSVLPVNVFDSLVLTAHKILHREPNCVRIDVEDVCEVVVVGDVHGQLHDVLFLLE   86 (377)
T ss_pred             cCHHHHHHHHHHHHhcccccCchhhccCCCHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCEEEEEecCCCHHHHHHHHH
Confidence            6889999999999766          346788999999999999999999999986555569999999999999999999


Q ss_pred             HcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccch---HHHHHHH
Q 014212          243 LNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSE---TFVELFA  319 (429)
Q Consensus       243 ~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~---~~~~~~~  319 (429)
                      ..++++.+..|||||||||||++|+||+.+|+++|+.+|++|++||||||.+.++..|||..|+..+|+.   .+|+.+.
T Consensus        87 ~~g~~~~~~~ylFLGDyVDRGp~SlEvl~lL~~lki~~p~~v~lLRGNHE~~~i~~~~Gf~~E~~~~y~~~~~~l~~~~~  166 (377)
T cd07418          87 DAGFPDQNRFYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESKFCTSMYGFEQEVLTKYGDKGKHVYRKCL  166 (377)
T ss_pred             HhCCCCCCceEEEeccccCCCCChHHHHHHHHHHhhccCCeEEEEeeecccccchhhcccchhhhhhcCchHHHHHHHHH
Confidence            9998876667999999999999999999999999999999999999999999999999999999999964   6999999


Q ss_pred             HHhccCcccceecCeEEEEecCcc--------------------------CCCCCCccccccccCC-CCCCCCC---ccc
Q 014212          320 EVFCCLPLAHVLNQKVFVVHGGLF--------------------------SVDGVKLSDIKTIDRF-CEPPEEG---LMC  369 (429)
Q Consensus       320 ~~~~~lp~~~~~~~~~~~vH~gi~--------------------------~~~~~~~~~i~~~~r~-~~~~~~~---~~~  369 (429)
                      ++|++||+++++++++||||||||                          ++...++++|+.++|+ .+++.++   +++
T Consensus       167 ~~f~~LPlaavI~~~i~cvHGGI~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~sl~~i~~i~r~~~~~~~~~~~~i~~  246 (377)
T cd07418         167 GCFEGLPLASIIAGRVYTAHGGLFRSPSLPKRKKQKGKNRRVLLLEPESESLKLGTLDDLMKARRSVLDPPGEGSNLIPG  246 (377)
T ss_pred             HHHHhCCcEEEECCCEEEECCCcCCcccccccccccccccccccccccccCCCCCCHHHHhhCCCCCCCCCCCCccccce
Confidence            999999999999999999999994                          2345789999999997 4676655   578


Q ss_pred             ccccCCCCCCCCCCCC-CCCCcEEE----------------EEeeccc------------cccCceeecC---CeEEEEc
Q 014212          370 ELLWSDPQPLPGRGPS-KRGVGLSF----------------VVRSHEV------------KDEGYEIEHD---GKLITVF  417 (429)
Q Consensus       370 ~~lw~dp~~~~~~~~~-~~~~~~~~----------------iir~h~~------------~~~g~~~~~~---~~~~t~f  417 (429)
                      |||||||....|+.++ .||.|+.|                ||||||+            +.+||++.++   ++|+|||
T Consensus       247 dlLWSDP~~~~g~~~~~~RG~g~~FG~~~~~~FL~~n~l~~IIRsHe~~~~~~~~~~~~~v~~Gy~~~~~~~~~~liTvF  326 (377)
T cd07418         247 DVLWSDPSLTPGLSPNKQRGIGLLWGPDCTEEFLEKNNLKLIIRSHEGPDAREKRPGLAGMNKGYTVDHDVESGKLITLF  326 (377)
T ss_pred             eeEeeCCccCCCCCccCCCCCccccCHHHHHHHHHHcCCcEEEECCCCcccccccccchhhhCceEEeccCCCCcEEEEe
Confidence            9999999988888775 79999988                9999996            6799999887   9999999


Q ss_pred             CCCCCC------CcCCCC
Q 014212          418 SAPNYC------DQVTKL  429 (429)
Q Consensus       418 s~~~y~------~~~~n~  429 (429)
                      ||||||      +.++|+
T Consensus       327 Sa~nY~~~~~~~~~~~N~  344 (377)
T cd07418         327 SAPDYPQFQATEERYNNK  344 (377)
T ss_pred             cCCccccccccccccCcc
Confidence            999999      567775

PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,

>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]

Probab=100.00  E-value=8.9e-63  Score=421.23  Aligned_cols=247  Identities=40%  Similarity=0.710  Sum_probs=236.2

Q ss_pred             HHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEE
Q 014212          176 DFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLF  255 (429)
Q Consensus       176 ~~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~  255 (429)
                      ..++..++.+...+.+.+..+..+|..++++|.++.++..+..|    +.++||+||+|.+|+++|+..|..|+. .|+|
T Consensus        18 ~~vd~~ie~L~~ck~lse~~v~~lc~~a~~~L~~e~nV~~v~~p----vtvcGDvHGqf~dl~ELfkiGG~~pdt-nylf   92 (319)
T KOG0371|consen   18 LDVDPWIEQLYKCKPLSEVDVSSLCLLAKEILDKEENVQPVNCP----VTVCGDVHGQFHDLIELFKIGGLAPDT-NYLF   92 (319)
T ss_pred             cccccchHHHHhcCCCccccchhHHHHHHHHHhccccccccccc----eEEecCcchhHHHHHHHHHccCCCCCc-ceee
Confidence            34677888888999999999999999999999999999998877    999999999999999999888877766 5999


Q ss_pred             ccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhccc-chHHHHHHHHHhccCcccceecCe
Q 014212          256 NGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKL-SETFVELFAEVFCCLPLAHVLNQK  334 (429)
Q Consensus       256 lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lp~~~~~~~~  334 (429)
                      +|||||||++|+|++.+|.++|++||++|.+||||||++.++..|||++||.||| ...+|..|.+.|+.+|+++.|+++
T Consensus        93 mGDyvdrGy~SvetVS~lva~Kvry~~rvtilrGNHEsrqitqvygfydeclRkyg~anvw~~Ftdlfdy~P~tali~~~  172 (319)
T KOG0371|consen   93 MGDYVDRGYYSVETVSLLVALKVRYPDRVTILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIESK  172 (319)
T ss_pred             eeeecccccchHHHHHHHHHhhccccceeEEecCchHHHHHHHHHhhHHHHHhhcccccchHHhhhhhhccchHhhhccc
Confidence            9999999999999999999999999999999999999999999999999999999 568999999999999999999999


Q ss_pred             EEEEecCccCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCCCcEEE----------------EEeec
Q 014212          335 VFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF----------------VVRSH  398 (429)
Q Consensus       335 ~~~vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~~~~~~~~~~~~~~~----------------iir~h  398 (429)
                      |||.|||+ ||.+.+++.++.++|.++.|.++.+||||||||.+..||+.++||.|..|                |.|+|
T Consensus       173 ifc~HGgL-spsi~tld~~r~~dr~~evphegpmcDlLwsdpddr~gwg~sprgag~tfg~di~~~fn~~n~lslisRah  251 (319)
T KOG0371|consen  173 IFCLHGGL-SPSIDTLDLIRLLDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHKNGLSLISRAH  251 (319)
T ss_pred             eeeccCCc-CcccchHHHHHHHHHhhcccCCCChhheeccCcccCCCCCCCCCCCCcccchhhHHHhhccCCchHhHHHH
Confidence            99999999 99999999999999999999999999999999999999999999999988                89999


Q ss_pred             cccccCceeecCCeEEEEcCCCCCCCcCCC
Q 014212          399 EVKDEGYEIEHDGKLITVFSAPNYCDQVTK  428 (429)
Q Consensus       399 ~~~~~g~~~~~~~~~~t~fs~~~y~~~~~n  428 (429)
                      |.+++||.|.+...++|||||||||++++|
T Consensus       252 qlvm~g~nW~~~~~~vtiFSapnycYrcgn  281 (319)
T KOG0371|consen  252 QLVMEGYNWYHLWNVVTIFSAPNYCYRCGN  281 (319)
T ss_pred             HHHhcccceeeecceeEEccCCchhhcccc
Confidence            999999999999999999999999999998

>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain

Probab=100.00  E-value=3.6e-61  Score=441.45  Aligned_cols=232  Identities=50%  Similarity=0.917  Sum_probs=219.8

Q ss_pred             cHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHH
Q 014212          192 HKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVIL  271 (429)
Q Consensus       192 ~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~  271 (429)
                      +++++..+|+++.+++.++|+++++..+    +.|+||+||++.++.++|+..+.++ .+.|+|||||||||++|+||+.
T Consensus         2 ~~~~i~~l~~~~~~il~~e~~~~~i~~~----i~vvGDiHG~~~~l~~ll~~~~~~~-~~~~vfLGD~VDrG~~s~e~l~   76 (271)
T smart00156        2 YAEEILELLREVKEIFRQEPNLVEVSAP----VTVCGDIHGQFDDLLRLFDLNGPPP-DTNYVFLGDYVDRGPFSIEVIL   76 (271)
T ss_pred             CHHHHHHHHHHHHHHHHhCCCeEEeCCC----EEEEEeCcCCHHHHHHHHHHcCCCC-CceEEEeCCccCCCCChHHHHH
Confidence            4678999999999999999999999755    9999999999999999999998765 4569999999999999999999


Q ss_pred             HHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccchHHHHHHHHHhccCcccceecCeEEEEecCccCCCCCCcc
Q 014212          272 TLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLS  351 (429)
Q Consensus       272 ~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~vH~gi~~~~~~~~~  351 (429)
                      +++++|+.+|.++++||||||.+.++..|||..|+..+|+.++|+.+.++|++||+++++++++||||||| +|...+++
T Consensus        77 ~l~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~l~~~~~~~f~~LPl~aii~~~~~~vHgGi-~~~~~~l~  155 (271)
T smart00156       77 LLFALKILYPNRVVLLRGNHESRSMNEIYGFYDECKRKYGEEIYEKFQEAFSWLPLAALIDNKILCMHGGL-SPDLTTLD  155 (271)
T ss_pred             HHHHHHhcCCCCEEEEeccccHHHHHHhccchhhhhhhcCHHHHHHHHHHHhhChhheEEcCeEEEEecCC-CCccCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999 88899999


Q ss_pred             ccccccCCCCCCCCCcccccccCCCCC-CCCCCCCCCCCcEEE----------------EEeeccccccCceeecCCeEE
Q 014212          352 DIKTIDRFCEPPEEGLMCELLWSDPQP-LPGRGPSKRGVGLSF----------------VVRSHEVKDEGYEIEHDGKLI  414 (429)
Q Consensus       352 ~i~~~~r~~~~~~~~~~~~~lw~dp~~-~~~~~~~~~~~~~~~----------------iir~h~~~~~g~~~~~~~~~~  414 (429)
                      +|+.++||.+++.+++++|+|||||.. ..++.+|+||.|+.|                ||||||++++||++.++++|+
T Consensus       156 ~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~  235 (271)
T smart00156      156 DIRKLKRPQEPPDEGLLIDLLWSDPDQPVDGFQPSIRGASYYFGPDAVDEFLKKNNLKLIIRAHQVVDDGYEFFHDRKLV  235 (271)
T ss_pred             HHhcccCCCCCCchhhhhheeecCCCcccCCCccCCCCCccccCHHHHHHHHHHCCCeEEEecCcccCCcEEEecCCcEE
Confidence            999999999999999999999999964 578899999999988                999999999999999999999


Q ss_pred             EEcCCCCCCCcCCCC
Q 014212          415 TVFSAPNYCDQVTKL  429 (429)
Q Consensus       415 t~fs~~~y~~~~~n~  429 (429)
                      |||||||||+.++|+
T Consensus       236 TvfSa~~y~~~~~n~  250 (271)
T smart00156      236 TIFSAPNYCGRFGNK  250 (271)
T ss_pred             EEECCcccccCCCce
Confidence            999999999998885

Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.

>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain

Probab=100.00  E-value=1.9e-58  Score=431.22  Aligned_cols=235  Identities=36%  Similarity=0.655  Sum_probs=215.4

Q ss_pred             CCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCC-------CCCeEEccccccC
Q 014212          190 CLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSE-------ENPYLFNGDFVDR  262 (429)
Q Consensus       190 ~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~-------~~~~~~lGD~vdr  262 (429)
                      .++++++..+|+++.++++++|.++++..+    +.++||+||++.+|.++|+..++++.       +..||||||||||
T Consensus        20 ~~~~~~i~~l~~~~~~il~~e~~~~~i~~~----~~viGDIHG~~~~L~~ll~~~g~~~~~~~~~~~~~~~vfLGDyVDR   95 (311)
T cd07419          20 FFNWNEILELCDAAEDIFKQEPMVLRLRAP----IKIFGDIHGQFGDLMRLFDEYGSPVTEAAGDIEYIDYLFLGDYVDR   95 (311)
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCCeEeeCCC----EEEEEeccCCHHHHHHHHHHcCCCcccccCCCcCceEEEECCccCC
Confidence            466788999999999999999999999765    99999999999999999999988754       2469999999999


Q ss_pred             CCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccch------HHHHHHHHHhccCcccceecCeEE
Q 014212          263 GSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSE------TFVELFAEVFCCLPLAHVLNQKVF  336 (429)
Q Consensus       263 G~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~lp~~~~~~~~~~  336 (429)
                      ||+|+||+.+|+++|+.+|++|++||||||.+.++..|||..++..+++.      .+|..++++|++||++++++++++
T Consensus        96 Gp~s~evl~ll~~lk~~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~~~~~~~~~~~l~~~~~~~f~~LPl~avi~~~~l  175 (311)
T cd07419          96 GSNSLETICLLLALKVKYPNQIHLIRGNHEDRDINALFGFREECKERLGEDPNDGDSVWRRINRLFEWLPLAAIIEDKIL  175 (311)
T ss_pred             CCChHHHHHHHHHhhhcCCCcEEEeccccchHHHHHHhcccHHHHHhcCccchhhHHHHHHHHHHHHhCchhheecccEE
Confidence            99999999999999999999999999999999999999999999888864      699999999999999999999999


Q ss_pred             EEecCccCCCCCCccccccccCCC-CCCCCCcccccccCCCCCC---CCCCCCC---CCCc--EEE--------------
Q 014212          337 VVHGGLFSVDGVKLSDIKTIDRFC-EPPEEGLMCELLWSDPQPL---PGRGPSK---RGVG--LSF--------------  393 (429)
Q Consensus       337 ~vH~gi~~~~~~~~~~i~~~~r~~-~~~~~~~~~~~lw~dp~~~---~~~~~~~---~~~~--~~~--------------  393 (429)
                      |||||| +|...++++|+.+.||. +++.+++++|+|||||...   .++.+++   ||.|  +.|              
T Consensus       176 ~vHgGi-~p~~~~l~~i~~i~r~~~~~~~~~~~~dllWsDP~~~~~~~~~~~~~~~~rg~g~~~~fg~~~~~~Fl~~n~l  254 (311)
T cd07419         176 CMHGGI-GRSINHVSEIEDLKRPLTMEFGEQVVMDLLWSDPTENDSVLGLRPNAIDPRGPGLIVKFGPDRVHRFLEENDL  254 (311)
T ss_pred             EEccCC-CCCCCcHHHHhhcCCCCCCCCCCcceeeeeccCccccccccccccCCCCCCCCCcceeECHHHHHHHHHHCCC
Confidence            999999 88999999999999996 5667889999999999864   3666666   9999  466              


Q ss_pred             --EEeeccccccCceeecCCeEEEEcCCCCCCCcCCCC
Q 014212          394 --VVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQVTKL  429 (429)
Q Consensus       394 --iir~h~~~~~g~~~~~~~~~~t~fs~~~y~~~~~n~  429 (429)
                        ||||||++++||++.++++|+|||||||||+.++|+
T Consensus       255 ~~iiRgHe~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~  292 (311)
T cd07419         255 QMIIRAHECVMDGFERFAQGKLITLFSATNYCGTAGNA  292 (311)
T ss_pred             eEEEEechhhhCCeEEeCCCeEEEEecCCcccCCCCce
Confidence              999999999999999999999999999999998884

Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most

>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-58  Score=421.89  Aligned_cols=272  Identities=40%  Similarity=0.747  Sum_probs=250.8

Q ss_pred             cccccCCCCCCCcccCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCH
Q 014212          155 QSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQF  234 (429)
Q Consensus       155 ~~l~~~~~~~~~~~~~~~l~~~~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~  234 (429)
                      ..+++...|.++.+... ++...++.+++.|+....++++++..++.++++.|+..|++..++......+.||||+||.+
T Consensus        99 ~sidv~d~y~Gp~ls~P-l~~~~i~~lieaFk~kq~LH~kYVl~iL~EakK~lkqmPnis~isTs~S~qVTiCGDLHGkl  177 (631)
T KOG0377|consen   99 TSIDVPDSYNGPKLSLP-LRKNHIDLLIEAFKKKQRLHPKYVLLILREAKKSLKQMPNISRISTSVSQQVTICGDLHGKL  177 (631)
T ss_pred             cceecCccCCCcccccC-cCchHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHhCCCCCccccccccceEEeccccccc
Confidence            46777778888988886 88899999999999999999999999999999999999999999888788899999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhccc---c
Q 014212          235 YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKL---S  311 (429)
Q Consensus       235 ~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~---~  311 (429)
                      +||.-+|-++|+|+..++|||.||+||||.+|+|||..|+++-+.+|..+|+.|||||...||-.|||..|+..||   +
T Consensus       178 DDL~~I~yKNGlPS~~npYvFNGDFVDRGk~siEvLmiL~a~~lv~P~~~~LNRGNHED~mmNlRYGF~kEv~~KYk~~~  257 (631)
T KOG0377|consen  178 DDLLVILYKNGLPSSSNPYVFNGDFVDRGKRSIEVLMILFALYLVYPNAVHLNRGNHEDHMMNLRYGFIKEVESKYKRHG  257 (631)
T ss_pred             cceEEEEecCCCCCCCCCeeecCchhhccccchhhHHHHHHHHhcCchhhhccCCchHHHHHHHHHhHHHHHHHHhhhcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999   6


Q ss_pred             hHHHHHHHHHhccCcccceecCeEEEEecCccCCCCCCccccccccCC-----CCCCC-----------------CCccc
Q 014212          312 ETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRF-----CEPPE-----------------EGLMC  369 (429)
Q Consensus       312 ~~~~~~~~~~~~~lp~~~~~~~~~~~vH~gi~~~~~~~~~~i~~~~r~-----~~~~~-----------------~~~~~  369 (429)
                      ..+.+.+.++|++||++.+|+.+||+||||| | +.++++-+.+|+|.     ..||.                 ...+.
T Consensus       258 k~Ilr~leevy~WLPi~tiid~~ilvvHGGi-S-d~Tdl~ll~kIeR~k~~Svlrpp~ek~~d~e~~s~~vg~dEW~Qi~  335 (631)
T KOG0377|consen  258 KRILRFLEEVYRWLPIGTIIDSRILVVHGGI-S-DSTDLDLLDKIERGKYVSVLRPPTEKGRDGEKLSKAVGVDEWQQIF  335 (631)
T ss_pred             cHHHHHHHHHHHhcchhhhcccceEEEecCc-c-cchhHHHHhhhhccceeEEecCCcccCccCCchhhhcChHHHHHHH
Confidence            7899999999999999999999999999999 5 56788888888775     12322                 23577


Q ss_pred             ccccCCCCCCCCCCCC-CCCCcEEE----------------EEeeccccccCceeecCCeEEEEcCCCCCCCcCCCC
Q 014212          370 ELLWSDPQPLPGRGPS-KRGVGLSF----------------VVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQVTKL  429 (429)
Q Consensus       370 ~~lw~dp~~~~~~~~~-~~~~~~~~----------------iir~h~~~~~g~~~~~~~~~~t~fs~~~y~~~~~n~  429 (429)
                      |++||||....|..|+ -||.|++|                +||||||.++||+++||++|+|||||+||....+|+
T Consensus       336 DImWSDP~~~~GC~pNt~RGgG~yFGpDvT~~~Lqk~~l~~liRSHECKpeGyEf~Hd~kvlTiFSASNYYe~GSNr  412 (631)
T KOG0377|consen  336 DIMWSDPQATMGCVPNTLRGGGCYFGPDVTDNFLQKHRLSYLIRSHECKPEGYEFCHDNKVLTIFSASNYYEIGSNR  412 (631)
T ss_pred             HHHhcCcccccCCCcccccCCcceeCchHHHHHHHHhCceeeeeecccCCCcceeeeCCeEEEEEeccchheecCCC
Confidence            9999999999998887 49999999                999999999999999999999999999999998885

>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain

Probab=99.98  E-value=5.4e-32  Score=245.40  Aligned_cols=195  Identities=48%  Similarity=0.743  Sum_probs=154.2

Q ss_pred             EEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchh
Q 014212          225 TVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEG  304 (429)
Q Consensus       225 ~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~  304 (429)
                      +++||+||++++|.++++..+.++ .+.+||+||+||||+.|.+|+.+++.++.. |.++++|+||||.+.++...++..
T Consensus         1 ~~igDiHg~~~~l~~~l~~~~~~~-~d~li~lGD~vdrg~~~~~~l~~l~~~~~~-~~~~~~l~GNHe~~~~~~~~~~~~   78 (225)
T cd00144           1 YVIGDIHGCLDDLLRLLEKIGFPP-NDKLIFLGDYVDRGPDSVEVIDLLLALKIL-PDNVILLRGNHEDMLLNFLYGFYD   78 (225)
T ss_pred             CEEeCCCCCHHHHHHHHHHhCCCC-CCEEEEECCEeCCCCCcHHHHHHHHHhcCC-CCcEEEEccCchhhhhhhhcCCcc
Confidence            479999999999999999988754 557999999999999999999999999877 899999999999998887766554


Q ss_pred             hh---------hcccchHHHHHHHHHhccCcccceecC-eEEEEecCccCCCCCCccccccccCCCCCCCCCcccccccC
Q 014212          305 EV---------RSKLSETFVELFAEVFCCLPLAHVLNQ-KVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWS  374 (429)
Q Consensus       305 ~~---------~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~~vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~  374 (429)
                      +.         .......++..+.++|..||+++.++. +++|||||+ +|.......+.      ..+.+....+++|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vHag~-~~~~~~~~~~~------~~~~~~~~~~~lw~  151 (225)
T cd00144          79 EDEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKKVLCVHGGL-SPGLPLEEQIK------EEPEDQLPEDLLWS  151 (225)
T ss_pred             hhhccchhHHHHHhhCHHHHHHHHHHHHhCcHheEeCCCeEEEEeCCC-CCccchHHhhh------cCcccccceeeeec
Confidence            32         222345678888999999999999987 999999999 55543333222      23345678899999


Q ss_pred             CCCCCCCCC-CCCC------------CCcEEEEEeeccccccCceeecCCeEEEEcCCCCCCCcCCC
Q 014212          375 DPQPLPGRG-PSKR------------GVGLSFVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQVTK  428 (429)
Q Consensus       375 dp~~~~~~~-~~~~------------~~~~~~iir~h~~~~~g~~~~~~~~~~t~fs~~~y~~~~~n  428 (429)
                      +|....... .+.+            ..+...|||||+++..|+....+++++||+|++.|++..+|
T Consensus       152 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~GHt~~~~~~~~~~~~~~i~IDtg~~~~~~~~~  218 (225)
T cd00144         152 DPLELPGGFGSSRRGGGPDAVEWFLKKNGLKLIVRGHTPVEEGYEFGHDGNLITIDSGCNYCGGGGN  218 (225)
T ss_pred             CCCCCCCCCcCCCCCCCHHHHHHHHHHCCCeEEEEcCccccCccEEcCCCCEEEEecCCcccCCCCc
Confidence            997544322 2222            23445599999999999877788999999999999866555

The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate

>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional

Probab=99.93  E-value=2.8e-25  Score=202.44  Aligned_cols=121  Identities=26%  Similarity=0.476  Sum_probs=95.3

Q ss_pred             ceEEEccCCCCHHHHHHHHHHcCCC--------CCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccc
Q 014212          223 HFTVCGDVHGQFYDLLNIFELNGLP--------SEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK  294 (429)
Q Consensus       223 ~~~v~GDihG~~~~l~~~l~~~~~~--------~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~  294 (429)
                      ++.||||||||++.|.++|++.++.        +..+++||+||||||||+|.+||.+++++.  .+.++++||||||.+
T Consensus         2 ~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~~~--~~~~~~~l~GNHE~~   79 (245)
T PRK13625          2 KYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELV--EKKAAYYVPGNHCNK   79 (245)
T ss_pred             ceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHHHh--hCCCEEEEeCccHHH
Confidence            4899999999999999999998764        345679999999999999999999999885  456899999999988


Q ss_pred             cchhhccch-------hhhhccc-------chHHHHHHHHHhccCcccceec-CeEEEEecCccCCC
Q 014212          295 SMNKIYGFE-------GEVRSKL-------SETFVELFAEVFCCLPLAHVLN-QKVFVVHGGLFSVD  346 (429)
Q Consensus       295 ~~~~~~~~~-------~~~~~~~-------~~~~~~~~~~~~~~lp~~~~~~-~~~~~vH~gi~~~~  346 (429)
                      .++...+-.       .+....+       ...+.+.+.+||++||++..++ ++++|||||+ .|.
T Consensus        80 ~l~~~~~~~~~~~~gg~~tl~~~~~~~~~~~~~~~~~~~~~~~~lPl~~~~~~~~~~~vHAG~-~~~  145 (245)
T PRK13625         80 LYRFFLGRNVTIAHGLETTVAEYEALPSHKQNMIKEKFITLYEQAPLYHILDEGRLVVAHAGI-RQD  145 (245)
T ss_pred             HHHHHhCCCccccchhHhHHHHHhccChhhHHHHHHHHHHHHHhCCceEEEeCCCEEEEECCC-ChH
Confidence            776543210       0111111       1346778899999999998774 6899999999 443

>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain

Probab=99.90  E-value=1.4e-23  Score=188.15  Aligned_cols=116  Identities=26%  Similarity=0.297  Sum_probs=89.7

Q ss_pred             eEEEccCCCCHHHHHHHHHHcCCC-------CCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccc
Q 014212          224 FTVCGDVHGQFYDLLNIFELNGLP-------SEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSM  296 (429)
Q Consensus       224 ~~v~GDihG~~~~l~~~l~~~~~~-------~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~  296 (429)
                      +++|||||||++.|.++|++.++.       +..+.+|||||||||||+|.+||.++++++.  +.++++|+||||.+.+
T Consensus         1 ~~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~vl~~l~~l~~--~~~~~~l~GNHE~~ll   78 (222)
T cd07413           1 YDFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSMVD--AGHALAVMGNHEFNAI   78 (222)
T ss_pred             CEEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHHHHHHHHHhhc--CCCEEEEEccCcHHHH
Confidence            378999999999999999998764       2346899999999999999999999999863  4578999999999877


Q ss_pred             hhhccc--hhhhh---------------ccc--chHHHHHHHHHhccCcccceecCeEEEEecCc
Q 014212          297 NKIYGF--EGEVR---------------SKL--SETFVELFAEVFCCLPLAHVLNQKVFVVHGGL  342 (429)
Q Consensus       297 ~~~~~~--~~~~~---------------~~~--~~~~~~~~~~~~~~lp~~~~~~~~~~~vH~gi  342 (429)
                      ....+-  ...+.               ..+  ..+..+...+||+.||+.... ++++|||||+
T Consensus        79 ~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~lP~~~~~-~~~~~VHAg~  142 (222)
T cd07413          79 AWHTKDPSGGEWLRAHSKKNLRQHQAFLEQFREHSEEHKDWLEWFKTLPLFLDL-GGVRVVHACW  142 (222)
T ss_pred             HhhhCCcccchhhhcCCCcccccHHHHHHHHhccchhHHHHHHHHhcCCcEEEE-CCEEEEECCc
Confidence            543221  00111               111  123456788999999999876 4799999998

PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of

>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain

Probab=99.90  E-value=7.8e-24  Score=187.76  Aligned_cols=166  Identities=20%  Similarity=0.301  Sum_probs=117.6

Q ss_pred             EEEccCCCCHHHHHHHHHHcCC-------CCCCCCeEEccccccCCCCcHHHHHHHHHhhhh---CCCeEEEecCCcccc
Q 014212          225 TVCGDVHGQFYDLLNIFELNGL-------PSEENPYLFNGDFVDRGSFSVEVILTLFAFKCM---CPSAIYLSRGNHESK  294 (429)
Q Consensus       225 ~v~GDihG~~~~l~~~l~~~~~-------~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~---~p~~~~~lrGNhe~~  294 (429)
                      +++||+||+++.|.++|+..+.       ....+.++++||+|||||++.+|+.+|++|+..   .+.++++|+||||.+
T Consensus         1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~   80 (208)
T cd07425           1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHELM   80 (208)
T ss_pred             CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcHH
Confidence            4799999999999999998764       234568999999999999999999999999743   467899999999999


Q ss_pred             cchhhccchhh-hhcccc------hHH---HHHHHHHhccCcccceecCeEEEEecCccCCCCCCccccccccCCCCCCC
Q 014212          295 SMNKIYGFEGE-VRSKLS------ETF---VELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPE  364 (429)
Q Consensus       295 ~~~~~~~~~~~-~~~~~~------~~~---~~~~~~~~~~lp~~~~~~~~~~~vH~gi~~~~~~~~~~i~~~~r~~~~~~  364 (429)
                      .+...+.+... ......      ..+   ...+.+|++.+|+...++ +++|||||+ +|                   
T Consensus        81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lP~~~~~~-~~~fvHag~-~~-------------------  139 (208)
T cd07425          81 NLCGDFRYVHPKYFNEFGGLAMRRRELFSPGGELGRWLRSKPVIVKVN-DTLFVHGGL-GP-------------------  139 (208)
T ss_pred             HHcchhccCChhHHHHHHhhhhhHHHhcCCccHHHHHHHhCCeEEEEC-CEEEEeCCc-HH-------------------
Confidence            88754332211 110000      011   124478999999998877 588899998 32                   


Q ss_pred             CCcccccccCCC----CCCC--C---CCCCCCCCcEEEEEeeccccccCceeecCCeEEEEcC
Q 014212          365 EGLMCELLWSDP----QPLP--G---RGPSKRGVGLSFVVRSHEVKDEGYEIEHDGKLITVFS  418 (429)
Q Consensus       365 ~~~~~~~lw~dp----~~~~--~---~~~~~~~~~~~~iir~h~~~~~g~~~~~~~~~~t~fs  418 (429)
                             +|++.    ....  +   ....-+..+...||+||+.++.|....++|+|++|-+
T Consensus       140 -------~w~r~y~~~~~~~~~~~~~~~~~l~~~~~~~iv~GHTh~~~~~~~~~~g~~i~ID~  195 (208)
T cd07425         140 -------LWYRGYSKETSDKECAAAHLDKVLERLGAKRMVVGHTPQEGGIVTFCGGKVIRIDV  195 (208)
T ss_pred             -------HHhhHhhhhhhhccchHHHHHHHHHHcCCCeEEEcCeeeecCceEEECCEEEEEeC
Confidence                   22211    0000  0   0011111233459999999998886789999999986

This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal

>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain

Probab=99.90  E-value=5.9e-23  Score=186.35  Aligned_cols=118  Identities=36%  Similarity=0.544  Sum_probs=94.2

Q ss_pred             ceEEEccCCCCHHHHHHHHHHcCCCC---------CCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCccc
Q 014212          223 HFTVCGDVHGQFYDLLNIFELNGLPS---------EENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHES  293 (429)
Q Consensus       223 ~~~v~GDihG~~~~l~~~l~~~~~~~---------~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~  293 (429)
                      ++.++||||||+..|..+|++.++.+         ..+.+|||||||||||+|.||+.+|++++.  +.++++|+||||.
T Consensus         2 ~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~evl~~l~~l~~--~~~~~~v~GNHE~   79 (234)
T cd07423           2 PFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVMSMVA--AGAALCVPGNHDN   79 (234)
T ss_pred             CeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHHHHHHHHHHhh--CCcEEEEECCcHH
Confidence            48999999999999999999987653         246799999999999999999999999874  3568899999999


Q ss_pred             ccchhhcc--------chhhhhccc---chHHHHHHHHHhccCcccceec-CeEEEEecCcc
Q 014212          294 KSMNKIYG--------FEGEVRSKL---SETFVELFAEVFCCLPLAHVLN-QKVFVVHGGLF  343 (429)
Q Consensus       294 ~~~~~~~~--------~~~~~~~~~---~~~~~~~~~~~~~~lp~~~~~~-~~~~~vH~gi~  343 (429)
                      +.++...+        +. +....+   ...+.+...+||+.||+...++ ++++|||||+|
T Consensus        80 ~l~~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~~lP~~~~~~~~~~~~vHag~~  140 (234)
T cd07423          80 KLYRKLQGRNVKITHGLE-ETVAQLEAESEEFKEEVIEFYESLPSHLVLDEGKLVVAHAGIK  140 (234)
T ss_pred             HHHHHhcCCCccccCccc-chHHHHhhccHHHHHHHHHHHHhCCcEEEeCCCcEEEEeCCCC
Confidence            88765432        21 111222   2346677889999999988775 57999999984

PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp

>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain

Probab=99.90  E-value=5.4e-24  Score=192.99  Aligned_cols=118  Identities=19%  Similarity=0.313  Sum_probs=95.9

Q ss_pred             eEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccch
Q 014212          224 FTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFE  303 (429)
Q Consensus       224 ~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~  303 (429)
                      +++||||||+++.|.++|++.++.+..+.++|+||+|||||+|+||+.++++++    .++++|+||||.+.+...+|+.
T Consensus         1 ~yvIGDIHG~~~~L~~LL~~i~~~~~~D~Li~lGDlVdRGp~s~evl~~l~~l~----~~v~~VlGNHD~~ll~~~~g~~   76 (257)
T cd07422           1 TYAIGDIQGCYDELQRLLEKINFDPAKDRLWLVGDLVNRGPDSLETLRFVKSLG----DSAKTVLGNHDLHLLAVAAGIK   76 (257)
T ss_pred             CEEEECCCCCHHHHHHHHHhcCCCCCCCEEEEecCcCCCCcCHHHHHHHHHhcC----CCeEEEcCCchHHHHHHhcCcc
Confidence            479999999999999999999887777889999999999999999999999986    5788999999999888766643


Q ss_pred             hhhhc----c-cchHHHHHHHHHhccCcccceecC-eEEEEecCccCCC
Q 014212          304 GEVRS----K-LSETFVELFAEVFCCLPLAHVLNQ-KVFVVHGGLFSVD  346 (429)
Q Consensus       304 ~~~~~----~-~~~~~~~~~~~~~~~lp~~~~~~~-~~~~vH~gi~~~~  346 (429)
                      .....    . ......+...+|++++|+...+++ ++++||||| +|.
T Consensus        77 ~~~~~~t~~~~l~~~~~~~~~~wLr~lPl~~~~~~~~~l~vHAGi-~p~  124 (257)
T cd07422          77 KPKKKDTLDDILNAPDRDELLDWLRHQPLLHRDPELGILMVHAGI-PPQ  124 (257)
T ss_pred             ccccHhHHHHHHhccchHHHHHHHHhCCCEEEECCccEEEEccCC-CCC
Confidence            21110    0 111223567899999999998875 899999999 554

ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa

>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional

Probab=99.90  E-value=6.3e-23  Score=183.87  Aligned_cols=170  Identities=19%  Similarity=0.238  Sum_probs=114.9

Q ss_pred             eecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccc
Q 014212          215 DIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK  294 (429)
Q Consensus       215 ~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~  294 (429)
                      .+..+...+++++|||||+++.|.++|+..++.+..+.++|+||+|||||+|.+||.+|...      +++.|+||||.+
T Consensus        10 ~~~~~~~~ri~vigDIHG~~~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s~~vl~~l~~~------~~~~v~GNHE~~   83 (218)
T PRK11439         10 RIAGHQWRHIWLVGDIHGCFEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSLRCLQLLEEH------WVRAVRGNHEQM   83 (218)
T ss_pred             cccCCCCCeEEEEEcccCCHHHHHHHHHhcCCCcccCEEEEcCcccCCCcCHHHHHHHHHcC------CceEeeCchHHH
Confidence            34444445799999999999999999999987766678999999999999999999999652      467899999998


Q ss_pred             cchhhccch--------hhhhccc---chHHHHHHHHHhccCccccee---cCeEEEEecCccCCCCCCccccccccCCC
Q 014212          295 SMNKIYGFE--------GEVRSKL---SETFVELFAEVFCCLPLAHVL---NQKVFVVHGGLFSVDGVKLSDIKTIDRFC  360 (429)
Q Consensus       295 ~~~~~~~~~--------~~~~~~~---~~~~~~~~~~~~~~lp~~~~~---~~~~~~vH~gi~~~~~~~~~~i~~~~r~~  360 (429)
                      .++...+-.        .++....   ..+......+|++.||+...+   ++++++||||+|.+..       ....+ 
T Consensus        84 ~l~~~~~~~~~~w~~~gg~~~~~l~~~~~~~~~~~~~~l~~LP~~~~~~~~~~~~~~vHAg~p~~~~-------~~~~~-  155 (218)
T PRK11439         84 ALDALASQQMSLWLMNGGDWFIALTDNQQKQAKTLLEKCQRLPFILEVHCRTGKHVIAHADYPADVY-------EWQKD-  155 (218)
T ss_pred             HHHHHHCCccchhhhCCChhhhhcchhhhHHHHHHHHHHhcCCcEEEeeccCCCEEEEeCCCCCCch-------hhhcc-
Confidence            886432210        1111111   123455667999999998765   3579999999843210       11100 


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCC-cEEEEEeeccccccCc
Q 014212          361 EPPEEGLMCELLWSDPQPLPGRGPSKRGV-GLSFVVRSHEVKDEGY  405 (429)
Q Consensus       361 ~~~~~~~~~~~lw~dp~~~~~~~~~~~~~-~~~~iir~h~~~~~g~  405 (429)
                           ....+++|+++.......  .++. |..+||-||+++....
T Consensus       156 -----~~~~~~~w~r~~~~~~~~--~~~~~~~~~vv~GHT~~~~~~  194 (218)
T PRK11439        156 -----VDLHQVLWSRSRLGERQK--GQGITGADHFWFGHTPLRHRV  194 (218)
T ss_pred             -----CCccceEEcChhhhhccc--cccccCCCEEEECCccCCCcc
Confidence                 023457998764322111  1222 4446899999876543

>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical)

Probab=99.89  E-value=2.6e-23  Score=188.11  Aligned_cols=119  Identities=22%  Similarity=0.344  Sum_probs=97.3

Q ss_pred             ceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccc
Q 014212          223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGF  302 (429)
Q Consensus       223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~  302 (429)
                      .+++|||||||++.|.++|++.++.+..+.++|+||+|||||+|+||+.++.+++    +++++|+||||.+.+...+|+
T Consensus         2 ~~YvIGDIHGc~daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~slevL~~l~~l~----~~~~~VlGNHD~~lL~~~~g~   77 (279)
T TIGR00668         2 ATYLIGDLHGCYDELQALLERVEFDPGQDTLWLTGDLVARGPGSLEVLRYVKSLG----DAVRLVLGNHDLHLLAVFAGI   77 (279)
T ss_pred             cEEEEEcccCCHHHHHHHHHHhCcCCCCCEEEEeCCccCCCCCHHHHHHHHHhcC----CCeEEEEChhHHHHHHHhcCC
Confidence            3899999999999999999999987777889999999999999999999998874    567789999999999887775


Q ss_pred             hh-----hhhcccchHHHHHHHHHhccCcccceec-CeEEEEecCccCCC
Q 014212          303 EG-----EVRSKLSETFVELFAEVFCCLPLAHVLN-QKVFVVHGGLFSVD  346 (429)
Q Consensus       303 ~~-----~~~~~~~~~~~~~~~~~~~~lp~~~~~~-~~~~~vH~gi~~~~  346 (429)
                      ..     ....-+.....+.+.+|++.+|+....+ .++++||||| +|.
T Consensus        78 ~~~~~~d~l~~~l~a~~~~ell~wLr~lPl~i~~~~~~~~lVHAGi-~P~  126 (279)
T TIGR00668        78 SRNKPKDRLDPLLEAPDADELLNWLRRQPLLQHDEEKKLVMAHAGI-TPQ  126 (279)
T ss_pred             CccCchHHHHHHHHccCHHHHHHHHHcCCcEEEeCCCCEEEEecCC-CCC
Confidence            31     1111112334567789999999987654 4799999999 554

Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.

>PHA02239 putative protein phosphatase

Probab=99.88  E-value=2.6e-22  Score=180.45  Aligned_cols=158  Identities=25%  Similarity=0.299  Sum_probs=111.1

Q ss_pred             ceEEEccCCCCHHHHHHHHHHcCCCC-CCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhcc
Q 014212          223 HFTVCGDVHGQFYDLLNIFELNGLPS-EENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYG  301 (429)
Q Consensus       223 ~~~v~GDihG~~~~l~~~l~~~~~~~-~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~  301 (429)
                      +++++||+||+++.|.++++...... +.+.+||+|||||||++|.+|+..++.+.. .+..+++|+||||.+.+....+
T Consensus         2 ~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s~~v~~~l~~~~~-~~~~~~~l~GNHE~~~l~~~~~   80 (235)
T PHA02239          2 AIYVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFDLMS-NDDNVVTLLGNHDDEFYNIMEN   80 (235)
T ss_pred             eEEEEECCCCCHHHHHHHHHHHhhcCCCCCEEEEecCcCCCCCChHHHHHHHHHHhh-cCCCeEEEECCcHHHHHHHHhC
Confidence            47999999999999999998874321 245799999999999999999999999754 4567888999999886543211


Q ss_pred             c-----h-hhhh--------cccc-------------------------------hHHHHHHHHHhccCcccceecCeEE
Q 014212          302 F-----E-GEVR--------SKLS-------------------------------ETFVELFAEVFCCLPLAHVLNQKVF  336 (429)
Q Consensus       302 ~-----~-~~~~--------~~~~-------------------------------~~~~~~~~~~~~~lp~~~~~~~~~~  336 (429)
                      .     . .+|.        ..|+                               ...+..+.+|++.||+....+ +++
T Consensus        81 ~~~~~~~~~~wl~~GG~~Tl~Syg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~lp~~~~~~-~~i  159 (235)
T PHA02239         81 VDRLSIYDIEWLSRYCIETLNSYGVSTVTLKYSSVEENLRNNYDFIKSELKKLKESDDYRKFKILMVNCRKYYKED-KYI  159 (235)
T ss_pred             chhcccchHHHHHcCCHHHHHHcCCCCccchhhHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHhCcceEEEC-CEE
Confidence            0     0 0122        1221                               112345567999999998865 799


Q ss_pred             EEecCccCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCCCcEEEEEeeccccccCc
Q 014212          337 VVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFVVRSHEVKDEGY  405 (429)
Q Consensus       337 ~vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~~~~~~~~~~~~~~~iir~h~~~~~g~  405 (429)
                      |||||+ .|.              .+.++....+++|.++ .      +++..|. +||.||+++.++.
T Consensus       160 fVHAGi-~p~--------------~~~~~q~~~~llWiR~-f------~~~~~g~-~vV~GHTp~~~~~  205 (235)
T PHA02239        160 FSHSGG-VSW--------------KPVEEQTIDQLIWSRD-F------QPRKDGF-TYVCGHTPTDSGE  205 (235)
T ss_pred             EEeCCC-CCC--------------CChhhCCHhHeEEecc-c------CCCCCCc-EEEECCCCCCCCc
Confidence            999999 332              1222334578999996 2      2222343 4999999987654

>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain

Probab=99.88  E-value=2.6e-22  Score=178.85  Aligned_cols=169  Identities=24%  Similarity=0.292  Sum_probs=117.1

Q ss_pred             ceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccc
Q 014212          223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGF  302 (429)
Q Consensus       223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~  302 (429)
                      +++++||+||++..|.++++..++.+..+.++|+||+|||||++.||+.+|..      ..+++++||||.+.+....+-
T Consensus         2 ri~~isDiHg~~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~~~~~~~~l~~------~~~~~v~GNhe~~~~~~~~~~   75 (207)
T cd07424           2 RDFVVGDIHGHYSLLQKALDAVGFDPARDRLISVGDLIDRGPESLACLELLLE------PWFHAVRGNHEQMAIDALRAE   75 (207)
T ss_pred             CEEEEECCCCCHHHHHHHHHHcCCCCCCCEEEEeCCcccCCCCHHHHHHHHhc------CCEEEeECCChHHHHhHhhCC
Confidence            58999999999999999999887655567799999999999999999999865      357889999999988765431


Q ss_pred             --hhhh-hcc-------c-chHHHHHHHHHhccCcccceec---CeEEEEecCccCCCCCCccccccccCCCCCCCCCcc
Q 014212          303 --EGEV-RSK-------L-SETFVELFAEVFCCLPLAHVLN---QKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLM  368 (429)
Q Consensus       303 --~~~~-~~~-------~-~~~~~~~~~~~~~~lp~~~~~~---~~~~~vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~  368 (429)
                        ..+. ...       . ...+.+...+||+.||+...++   +++++||||+|+.....+  +   .+  ++......
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lP~~~~i~~~g~~~~~vHag~~~~~~~~~--~---~~--~~~~~~~~  148 (207)
T cd07424          76 PLDAVRWLANGGEWFLDLPDEELRRWLALKLEQLPLAIEVETEGGKVGIVHADYPSDDWSDG--V---GA--VTLRPEDI  148 (207)
T ss_pred             CcchhHHHhcCCeehhhcChHHHHHHHHHHHHhCCeEEEEEeCCCEEEEECCCCCcchhhhh--h---hc--cccCcccc
Confidence              1111 111       1 1225666888999999998774   479999999843221110  0   00  22334456


Q ss_pred             cccccCCCCCCCCCCCCCCCCcEEEEEeeccccccCce
Q 014212          369 CELLWSDPQPLPGRGPSKRGVGLSFVVRSHEVKDEGYE  406 (429)
Q Consensus       369 ~~~lw~dp~~~~~~~~~~~~~~~~~iir~h~~~~~g~~  406 (429)
                      .+++|++|.........  ..|..+||-||+.+...+.
T Consensus       149 ~~~~w~~~~~~~~~~~~--~~~~~~iV~GHTh~~~~~~  184 (207)
T cd07424         149 EELLWSRTRIQKAQTQP--IKGVDAVVHGHTPVKRPLR  184 (207)
T ss_pred             eeeeeccchhhhcCccc--cCCCCEEEECCCCCCcceE
Confidence            77999987543322111  1233458999998765544

PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all

>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain

Probab=99.88  E-value=2.9e-22  Score=181.01  Aligned_cols=76  Identities=25%  Similarity=0.288  Sum_probs=63.7

Q ss_pred             ceEEEccCCCCHHHHHHHHHHcCCC-----CCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCC-eEEEecCCcccccc
Q 014212          223 HFTVCGDVHGQFYDLLNIFELNGLP-----SEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPS-AIYLSRGNHESKSM  296 (429)
Q Consensus       223 ~~~v~GDihG~~~~l~~~l~~~~~~-----~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~-~~~~lrGNhe~~~~  296 (429)
                      .++++|||||+++.|..+++.....     +..+.+|||||||||||+|.+|+.+|++++..+|. .+++|+||||.+++
T Consensus         3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eVld~L~~l~~~~~~~~vv~LrGNHE~~~l   82 (304)
T cd07421           3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEKHPKQRHVFLCGNHDFAFA   82 (304)
T ss_pred             eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHHHHHHHHhhhcccccceEEEecCChHHHH
Confidence            4899999999999999998865321     22446999999999999999999999999988875 67889999997765


Q ss_pred             hh
Q 014212          297 NK  298 (429)
Q Consensus       297 ~~  298 (429)
                      ..
T Consensus        83 ~f   84 (304)
T cd07421          83 AF   84 (304)
T ss_pred             hH
Confidence            43

Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol

>PRK00166 apaH diadenosine tetraphosphatase; Reviewed

Probab=99.87  E-value=2.7e-22  Score=183.94  Aligned_cols=119  Identities=20%  Similarity=0.311  Sum_probs=95.6

Q ss_pred             ceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccc
Q 014212          223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGF  302 (429)
Q Consensus       223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~  302 (429)
                      ++++||||||+++.|.+++++.++.+..+.++|+||+|||||+|.+|+.+++++    +.++++|+||||.+++...+|+
T Consensus         2 ~~~vIGDIHG~~~~l~~ll~~~~~~~~~D~li~lGDlVdrGp~s~~vl~~l~~l----~~~~~~VlGNHD~~ll~~~~g~   77 (275)
T PRK00166          2 ATYAIGDIQGCYDELQRLLEKIDFDPAKDTLWLVGDLVNRGPDSLEVLRFVKSL----GDSAVTVLGNHDLHLLAVAAGI   77 (275)
T ss_pred             cEEEEEccCCCHHHHHHHHHhcCCCCCCCEEEEeCCccCCCcCHHHHHHHHHhc----CCCeEEEecChhHHHHHhhcCC
Confidence            389999999999999999999887666678999999999999999999999887    3578899999999988777665


Q ss_pred             hhh----hhccc-chHHHHHHHHHhccCccccee-cCeEEEEecCccCCC
Q 014212          303 EGE----VRSKL-SETFVELFAEVFCCLPLAHVL-NQKVFVVHGGLFSVD  346 (429)
Q Consensus       303 ~~~----~~~~~-~~~~~~~~~~~~~~lp~~~~~-~~~~~~vH~gi~~~~  346 (429)
                      ...    ....+ .....+...+|++.+|+...+ ++++++||||+ +|.
T Consensus        78 ~~~~~~~~l~~~l~~~~~~~~~~~L~~lPl~~~~~~~~~l~vHAGi-~p~  126 (275)
T PRK00166         78 KRNKKKDTLDPILEAPDRDELLDWLRHQPLLHVDEELGLVMVHAGI-PPQ  126 (275)
T ss_pred             ccccchhHHHHHHccccHHHHHHHHHCCCcEEEECCCCEEEEccCC-CCC
Confidence            321    11111 112345578999999998876 56899999999 454

>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional

Probab=99.85  E-value=1.2e-20  Score=168.78  Aligned_cols=169  Identities=21%  Similarity=0.232  Sum_probs=111.5

Q ss_pred             eecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccc
Q 014212          215 DIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK  294 (429)
Q Consensus       215 ~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~  294 (429)
                      .+..+...++.++||+||+++.|.++++...+.+..+.++|+||+|||||+|.+|+.++..      .+++.||||||.+
T Consensus         8 ~~~~~~~~ri~visDiHg~~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~~~~l~~l~~------~~~~~v~GNHE~~   81 (218)
T PRK09968          8 KINAHHYRHIWVVGDIHGEYQLLQSRLHQLSFCPETDLLISVGDNIDRGPESLNVLRLLNQ------PWFISVKGNHEAM   81 (218)
T ss_pred             eccCCCCCeEEEEEeccCCHHHHHHHHHhcCCCCCCCEEEECCCCcCCCcCHHHHHHHHhh------CCcEEEECchHHH
Confidence            4444445679999999999999999999987666667899999999999999999999853      3578899999998


Q ss_pred             cchhhcc--c------hhhhhcccch---HHHHHHHHHhccCcccceec---CeEEEEecCccCCCCCCccccccccCCC
Q 014212          295 SMNKIYG--F------EGEVRSKLSE---TFVELFAEVFCCLPLAHVLN---QKVFVVHGGLFSVDGVKLSDIKTIDRFC  360 (429)
Q Consensus       295 ~~~~~~~--~------~~~~~~~~~~---~~~~~~~~~~~~lp~~~~~~---~~~~~vH~gi~~~~~~~~~~i~~~~r~~  360 (429)
                      .+....+  .      ..++......   .......+|++.||+...+.   +++++||||+|.+..   ...       
T Consensus        82 ~~~~~~~~~~~~~~~~gg~~~~~l~~~~~~~~~~~~~~L~~LP~~~~~~~~g~~~~~vHAg~p~~~~---~~~-------  151 (218)
T PRK09968         82 ALDAFETGDGNMWLASGGDWFFDLNDSEQQEATDLLLKFHHLPHIIEITNDNIKYVIAHADYPGDEY---DFG-------  151 (218)
T ss_pred             HHHHHhcCChhHHHHccCHHHhcCCHHHHHHHHHHHHHHhcCCeEEEEeeCCCcEEEEeCCCCCchh---hhc-------
Confidence            8764311  0      0122222221   23334467999999998663   479999999843210   000       


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCC-CCCCcEEEEEeeccccc
Q 014212          361 EPPEEGLMCELLWSDPQPLPGRGPS-KRGVGLSFVVRSHEVKD  402 (429)
Q Consensus       361 ~~~~~~~~~~~lw~dp~~~~~~~~~-~~~~~~~~iir~h~~~~  402 (429)
                         ......+++|+++.....+... .+..+..+||-||+...
T Consensus       152 ---~~~~~~~~~w~r~~~~~~~~~~~~~~~~~~~vv~GHTh~~  191 (218)
T PRK09968        152 ---KEIAESELLWPVDRVQKSLNGELQQINGADYFIFGHMMFD  191 (218)
T ss_pred             ---cccchhhceeCcHHHhhCccccccccCCCCEEEECCCCcC
Confidence               0011345689854332222111 11234456999999764

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.77  E-value=4.5e-19  Score=170.41  Aligned_cols=174  Identities=21%  Similarity=0.274  Sum_probs=142.1

Q ss_pred             CCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 014212            6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY   85 (429)
Q Consensus         6 ~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~   85 (429)
                      +-.-+|.-+++++++|++|-..+.|++|+..|.+|+.+.|+.+.++-++|.+|+.+|+.+-|+++|++|++++|.++++|
T Consensus       244 AvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay  323 (966)
T KOG4626|consen  244 AVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAY  323 (966)
T ss_pred             hhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHH
Confidence            34567888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCC
Q 014212           86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSG  165 (429)
Q Consensus        86 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~  165 (429)
                      +++|.++...|+..||+.+|.+|+.+.|+++++..+++.++..+++  +++|..+|.            +++++.|.+..
T Consensus       324 ~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~--~e~A~~ly~------------~al~v~p~~aa  389 (966)
T KOG4626|consen  324 NNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGK--IEEATRLYL------------KALEVFPEFAA  389 (966)
T ss_pred             hHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcc--chHHHHHHH------------HHHhhChhhhh
Confidence            9999999999999999999999999999999999999998888876  666666666            88888888888


Q ss_pred             CcccCCCCC--HHHHHHHHHHhhcccCCcH
Q 014212          166 ARIEGDVIT--LDFVKKMMDDFKNQKCLHK  193 (429)
Q Consensus       166 ~~~~~~~l~--~~~l~~li~~l~~~~~l~~  193 (429)
                      +.-+.+.+.  .+.+++.+..++...++.+
T Consensus       390 a~nNLa~i~kqqgnl~~Ai~~YkealrI~P  419 (966)
T KOG4626|consen  390 AHNNLASIYKQQGNLDDAIMCYKEALRIKP  419 (966)
T ss_pred             hhhhHHHHHHhcccHHHHHHHHHHHHhcCc
Confidence            766554322  2345566666555554444

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.75  E-value=1.8e-17  Score=147.97  Aligned_cols=123  Identities=41%  Similarity=0.694  Sum_probs=117.5

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   88 (429)
                      ++...++.+...|+.+++.++|++|+..|.+||+++|.++..|.++|.+|.++|.++.|++.++.|+.+||.+.++|.+|
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL  155 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL  155 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence            46778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (429)
Q Consensus        89 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  131 (429)
                      |.+|+.+|++++|++.|++||+++|++...+.+|..+...++.
T Consensus       156 G~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e  198 (304)
T KOG0553|consen  156 GLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE  198 (304)
T ss_pred             HHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999887766654

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.71  E-value=1.9e-17  Score=159.40  Aligned_cols=149  Identities=21%  Similarity=0.248  Sum_probs=123.9

Q ss_pred             CcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 014212            7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY   86 (429)
Q Consensus         7 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   86 (429)
                      ....|..+.++-++|.+|+.+|+.+-|+..|++|++++|+.+.++.++|.++...|+..+|+.+|.+|+.+.|..+++.+
T Consensus       279 l~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~  358 (966)
T KOG4626|consen  279 LNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMN  358 (966)
T ss_pred             HhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHH
Confidence            45578888888888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCC
Q 014212           87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA  166 (429)
Q Consensus        87 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~  166 (429)
                      +||.+|.++|++++|...|.++++..|+...+..+++.++.+.|+  +++|+..|.            +++.+.|.+..+
T Consensus       359 NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgn--l~~Ai~~Yk------------ealrI~P~fAda  424 (966)
T KOG4626|consen  359 NLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGN--LDDAIMCYK------------EALRIKPTFADA  424 (966)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhccc--HHHHHHHHH------------HHHhcCchHHHH
Confidence            999999999999999999999999999999999999988888887  566665554            555555555544


Q ss_pred             ccc
Q 014212          167 RIE  169 (429)
Q Consensus       167 ~~~  169 (429)
                      ..+
T Consensus       425 ~~N  427 (966)
T KOG4626|consen  425 LSN  427 (966)
T ss_pred             HHh
Confidence            333

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.70  E-value=8.7e-16  Score=128.53  Aligned_cols=115  Identities=22%  Similarity=0.202  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 014212           16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM   95 (429)
Q Consensus        16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~   95 (429)
                      .++.+|..+...|++++|+..|++++..+|.+..+|.++|.++..+|++++|+..|++++.++|+++.+++++|.++..+
T Consensus        26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~  105 (144)
T PRK15359         26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM  105 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014212           96 GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK  130 (429)
Q Consensus        96 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~  130 (429)
                      |++++|+..|++++++.|+++..+..++.+...+.
T Consensus       106 g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~  140 (144)
T PRK15359        106 GEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD  140 (144)
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998876654

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.62  E-value=3.6e-16  Score=152.50  Aligned_cols=151  Identities=23%  Similarity=0.327  Sum_probs=140.6

Q ss_pred             CCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 014212            6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY   85 (429)
Q Consensus         6 ~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~   85 (429)
                      ....+|..++.|..+|++|--+++++.|++.|++|++++|.++.+|..+|.-+....+++.|..+|++|+..+|.+..||
T Consensus       413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAw  492 (638)
T KOG1126|consen  413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAW  492 (638)
T ss_pred             HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCC
Q 014212           86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSG  165 (429)
Q Consensus        86 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~  165 (429)
                      |.+|.+|.++++++.|.-+|++|++++|.+......++..+.++++  .++|+.+++            +++.++|....
T Consensus       493 YGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~--~d~AL~~~~------------~A~~ld~kn~l  558 (638)
T KOG1126|consen  493 YGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKR--KDKALQLYE------------KAIHLDPKNPL  558 (638)
T ss_pred             HhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhh--hhHHHHHHH------------HHHhcCCCCch
Confidence            9999999999999999999999999999999999999999999998  678888888            88888887655


Q ss_pred             CcccC
Q 014212          166 ARIEG  170 (429)
Q Consensus       166 ~~~~~  170 (429)
                      ..+..
T Consensus       559 ~~~~~  563 (638)
T KOG1126|consen  559 CKYHR  563 (638)
T ss_pred             hHHHH
Confidence            54433

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.60  E-value=8.1e-14  Score=114.88  Aligned_cols=111  Identities=16%  Similarity=0.228  Sum_probs=105.1

Q ss_pred             ccc-HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 014212            8 NSS-VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY   86 (429)
Q Consensus         8 ~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   86 (429)
                      +.+ +++.+..+.+|..++..|++++|...|+-+...+|.+...|++||.|+..+|+|++|+.+|.+|+.++|+++.+++
T Consensus        28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~  107 (157)
T PRK15363         28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW  107 (157)
T ss_pred             CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence            345 7889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 014212           87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA  118 (429)
Q Consensus        87 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~  118 (429)
                      ++|.|+...|+.+.|.+.|+.|+....++++-
T Consensus       108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~  139 (157)
T PRK15363        108 AAAECYLACDNVCYAIKALKAVVRICGEVSEH  139 (157)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHhccChhH
Confidence            99999999999999999999999998555443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.58  E-value=5.9e-14  Score=120.89  Aligned_cols=148  Identities=22%  Similarity=0.243  Sum_probs=130.9

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   88 (429)
                      .....+.+...+|.-|+.+|++..|...+++|++.+|++..+|..+|.+|...|+.+.|-+.|++|+.++|++.+++.+.
T Consensus        30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNY  109 (250)
T COG3063          30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNY  109 (250)
T ss_pred             cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhh
Confidence            34456678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCC
Q 014212           89 GAAYLAMGKFKEALKDFQQVKKL--SPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA  166 (429)
Q Consensus        89 a~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~  166 (429)
                      |.-++.+|++++|...|++|+..  .|..+..+.+++.|..+.|+  +..|..++.            ++++.+|.+..+
T Consensus       110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq--~~~A~~~l~------------raL~~dp~~~~~  175 (250)
T COG3063         110 GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ--FDQAEEYLK------------RALELDPQFPPA  175 (250)
T ss_pred             hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC--chhHHHHHH------------HHHHhCcCCChH
Confidence            99999999999999999999984  24556789999999888776  455555544            899999988777


Q ss_pred             cccC
Q 014212          167 RIEG  170 (429)
Q Consensus       167 ~~~~  170 (429)
                      .+..
T Consensus       176 ~l~~  179 (250)
T COG3063         176 LLEL  179 (250)
T ss_pred             HHHH
Confidence            6554

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.58  E-value=1.3e-13  Score=114.18  Aligned_cols=120  Identities=23%  Similarity=0.407  Sum_probs=112.3

Q ss_pred             CcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 014212            7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY   86 (429)
Q Consensus         7 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   86 (429)
                      ...+|+++.+.+.+|..++..|++++|+..++++++.+|.++.++..+|.++..+|++++|+..+++++..+|+++..++
T Consensus        10 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~   89 (135)
T TIGR02552        10 LGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYF   89 (135)
T ss_pred             HcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence            45678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014212           87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE  126 (429)
Q Consensus        87 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~  126 (429)
                      .+|.++...|++++|+..|+++++++|++.........+.
T Consensus        90 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  129 (135)
T TIGR02552        90 HAAECLLALGEPESALKALDLAIEICGENPEYSELKERAE  129 (135)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence            9999999999999999999999999999988665554443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.57  E-value=5.2e-14  Score=146.31  Aligned_cols=154  Identities=21%  Similarity=0.215  Sum_probs=121.3

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   89 (429)
                      .|..+.++..+|..++..|++++|+..|+++++++|.+..+|..+|.++..+|++++|+..|+++++.+|+++.+++.+|
T Consensus       327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg  406 (615)
T TIGR00990       327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRA  406 (615)
T ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            57778888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCC----------------------cccccc
Q 014212           90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVP----------------------ESERHS  147 (429)
Q Consensus        90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~----------------------~~~~~~  147 (429)
                      .++..+|++++|+.+|+++++++|++..++..++.++..+++  +++|+..+                      ..+++.
T Consensus       407 ~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~--~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~  484 (615)
T TIGR00990       407 QLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS--IASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFD  484 (615)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHH
Confidence            888888888888888888888888888888888888877776  33433332                      234556


Q ss_pred             ccccccccccccCCCCCC
Q 014212          148 VADSIDYQSIEVEPQYSG  165 (429)
Q Consensus       148 ~a~~~~~~~l~~~~~~~~  165 (429)
                      +|...+.+++++.|....
T Consensus       485 ~A~~~~~~Al~l~p~~~~  502 (615)
T TIGR00990       485 EAIEKFDTAIELEKETKP  502 (615)
T ss_pred             HHHHHHHHHHhcCCcccc
Confidence            666666677777776433

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.56  E-value=1.9e-14  Score=149.59  Aligned_cols=132  Identities=23%  Similarity=0.290  Sum_probs=105.2

Q ss_pred             ccHhHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh
Q 014212            9 SSVSRAEELKALANEAF---RAKKYSQAIDLYSQAIEL---NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP   82 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~---~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~   82 (429)
                      .++.....+..++..+.   ..++|++|++.|+++++.   .|..+.++..+|.++..+|++++|+..+++++.++|++.
T Consensus       286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~  365 (615)
T TIGR00990       286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT  365 (615)
T ss_pred             cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence            35555555666665543   347888888888888876   467777888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        83 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      .+|+.+|.++..+|++++|+..|+++++.+|+++.++..++.++...++  +++|+..++
T Consensus       366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~  423 (615)
T TIGR00990       366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE--FAQAGKDYQ  423 (615)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            8888888888888888888888888888888888888888888888777  677777666

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.54  E-value=2e-13  Score=131.55  Aligned_cols=116  Identities=37%  Similarity=0.663  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 014212           16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM   95 (429)
Q Consensus        16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~   95 (429)
                      .+...|..++..|+|++|++.|+++++++|+++.+++++|.++..+|++++|+..+++++.++|+++.+|+++|.++..+
T Consensus         4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l   83 (356)
T PLN03088          4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL   83 (356)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            47788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212           96 GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (429)
Q Consensus        96 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  131 (429)
                      |++++|+..|+++++++|+++.+...++.+...+..
T Consensus        84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~  119 (356)
T PLN03088         84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE  119 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999888777643

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.51  E-value=4.7e-13  Score=126.08  Aligned_cols=108  Identities=24%  Similarity=0.262  Sum_probs=104.1

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   89 (429)
                      .+..+..++.+|..+...|++++|+..|+++++++|+++.+|+++|.++...|++++|+..|+++++++|++..+|+++|
T Consensus        60 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg  139 (296)
T PRK11189         60 DEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRG  139 (296)
T ss_pred             cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            34558889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014212           90 AAYLAMGKFKEALKDFQQVKKLSPNDPD  117 (429)
Q Consensus        90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~  117 (429)
                      .++...|++++|++.|+++++++|+++.
T Consensus       140 ~~l~~~g~~~eA~~~~~~al~~~P~~~~  167 (296)
T PRK11189        140 IALYYGGRYELAQDDLLAFYQDDPNDPY  167 (296)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            9999999999999999999999999984

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.50  E-value=6.8e-14  Score=117.06  Aligned_cols=117  Identities=13%  Similarity=0.180  Sum_probs=106.9

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 014212           34 IDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP  113 (429)
Q Consensus        34 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p  113 (429)
                      ...|+++++++|++   +..+|.++.+.|++++|+..|++++.++|.+..+|+.+|.++..+|++++|+..|+++++++|
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            46789999999985   567899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCCc
Q 014212          114 NDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGAR  167 (429)
Q Consensus       114 ~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~  167 (429)
                      +++.+++.+|.++..+|+  +++|+..++            ++++..|......
T Consensus        90 ~~~~a~~~lg~~l~~~g~--~~eAi~~~~------------~Al~~~p~~~~~~  129 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGE--PGLAREAFQ------------TAIKMSYADASWS  129 (144)
T ss_pred             CCcHHHHHHHHHHHHcCC--HHHHHHHHH------------HHHHhCCCChHHH
Confidence            999999999999999988  778887777            8888888765543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=1.8e-13  Score=128.44  Aligned_cols=126  Identities=25%  Similarity=0.339  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 014212           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA   94 (429)
Q Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   94 (429)
                      +...-.|+.|.-.++.++|+.+|++|++++|....+|..+|.-|+.+++...|++.|++|+.++|.+-.+|+.||++|..
T Consensus       331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei  410 (559)
T KOG1155|consen  331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI  410 (559)
T ss_pred             cceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH
Confidence            34456788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           95 MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        95 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      ++...=|+-+|++|+++.|+++..|..+|.|+..+++  .++|+..+.
T Consensus       411 m~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~--~~eAiKCyk  456 (559)
T KOG1155|consen  411 MKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNR--LEEAIKCYK  456 (559)
T ss_pred             hcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhcc--HHHHHHHHH
Confidence            9999999999999999999999999999999999887  677777666

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.49  E-value=9.1e-13  Score=116.22  Aligned_cols=109  Identities=18%  Similarity=0.226  Sum_probs=74.1

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHhhC--HHHHHHHHHHHHHhCCCChHHH
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAH-TKLEE--YGSAIQDASKAIEIDPRYPKGY   85 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~--~~~A~~~~~~al~~~p~~~~~~   85 (429)
                      .+|++++.|..+|..+...|++++|+..|+++++++|+++.++..+|.++ ...|+  +++|.+.++++++.+|+++.++
T Consensus        68 ~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al  147 (198)
T PRK10370         68 ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTAL  147 (198)
T ss_pred             HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHH
Confidence            35666667777777777777777777777777777777777777777654 45555  4677777777777777777777


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014212           86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD  117 (429)
Q Consensus        86 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~  117 (429)
                      +.+|.++..+|++++|+.++++++++.|.+.+
T Consensus       148 ~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~  179 (198)
T PRK10370        148 MLLASDAFMQADYAQAIELWQKVLDLNSPRVN  179 (198)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            77777777777777777777777766665443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=5.9e-13  Score=124.98  Aligned_cols=133  Identities=18%  Similarity=0.228  Sum_probs=127.5

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   87 (429)
                      .-+|....+|-.+|..|+..++...|++.|++|++++|.|-.+|+.+|++|.-++-..=|+-+|++|+.+.|.++..|..
T Consensus       358 kLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~a  437 (559)
T KOG1155|consen  358 KLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVA  437 (559)
T ss_pred             hcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHH
Confidence            34788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      ||.||.++++.++|+.+|.+|+.....+..++..+|.++..+++  .++|..+++
T Consensus       438 LG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d--~~eAa~~ye  490 (559)
T KOG1155|consen  438 LGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKD--LNEAAQYYE  490 (559)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh--HHHHHHHHH
Confidence            99999999999999999999999999999999999999999998  778887777

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.48  E-value=5e-13  Score=117.88  Aligned_cols=122  Identities=12%  Similarity=0.130  Sum_probs=112.3

Q ss_pred             hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH-HHcCC--HHHHHH
Q 014212           27 AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY-LAMGK--FKEALK  103 (429)
Q Consensus        27 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~eA~~  103 (429)
                      .++.++++..++++++.+|+++.+|..+|.++...|++++|+.+|+++++++|+++.++..+|.++ ...|+  +++|.+
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            466789999999999999999999999999999999999999999999999999999999999975 77787  599999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCC
Q 014212          104 DFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQ  162 (429)
Q Consensus       104 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~  162 (429)
                      .++++++.+|+++.+++.+|..+...|+  +++|+..++            ++++..|.
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~--~~~Ai~~~~------------~aL~l~~~  176 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQAD--YAQAIELWQ------------KVLDLNSP  176 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCC--HHHHHHHHH------------HHHhhCCC
Confidence            9999999999999999999999988887  788888887            77777665

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=8.3e-13  Score=126.32  Aligned_cols=122  Identities=37%  Similarity=0.622  Sum_probs=116.2

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   87 (429)
                      -.+|+.+......|+.+++.|+|..|+..|.+|++.+|+++.+|.|+|.||..++.+..|+.+++++++++|++..+|.+
T Consensus       352 ~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~R  431 (539)
T KOG0548|consen  352 YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLR  431 (539)
T ss_pred             hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHH
Confidence            34677788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014212           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV  129 (429)
Q Consensus        88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~  129 (429)
                      -|.++..+.+|++|++.|+++++++|++.++.-.+..|...+
T Consensus       432 Kg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  432 KGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999998888887654

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.46  E-value=6.4e-13  Score=114.58  Aligned_cols=134  Identities=16%  Similarity=0.079  Sum_probs=121.9

Q ss_pred             CcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CCCChHH
Q 014212            7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--DPRYPKG   84 (429)
Q Consensus         7 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~   84 (429)
                      -+.+|+...+|..+|.+|.+.|+.+.|-+.|++|++++|++.++++|.|..+..+|++++|...|++|+..  .|..+..
T Consensus        62 L~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t  141 (250)
T COG3063          62 LEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDT  141 (250)
T ss_pred             HHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchh
Confidence            45689999999999999999999999999999999999999999999999999999999999999999985  2456789


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      +-++|.|-.++|+++.|...|+++++++|+++.+...++..+...++  +..|..+++
T Consensus       142 ~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~--y~~Ar~~~~  197 (250)
T COG3063         142 LENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGD--YAPARLYLE  197 (250)
T ss_pred             hhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhccc--chHHHHHHH
Confidence            99999999999999999999999999999999999888888877776  556655555

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.46  E-value=1e-12  Score=140.44  Aligned_cols=168  Identities=11%  Similarity=0.108  Sum_probs=133.8

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 014212           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA   90 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~   90 (429)
                      |.....+..++......|++++|+..|+++++++|+ +.++.++|.++.++|++++|+..|++++.++|+++.++.++|.
T Consensus       573 P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~  651 (987)
T PRK09782        573 LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGY  651 (987)
T ss_pred             CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            334444445555556669999999999999999996 8899999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCCcccC
Q 014212           91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEG  170 (429)
Q Consensus        91 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~  170 (429)
                      ++..+|++++|+..|+++++++|+++.++.+++.++..+|+  +++|...++            +++++.|+........
T Consensus       652 aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd--~~eA~~~l~------------~Al~l~P~~a~i~~~~  717 (987)
T PRK09782        652 ALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD--MAATQHYAR------------LVIDDIDNQALITPLT  717 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHH------------HHHhcCCCCchhhhhh
Confidence            99999999999999999999999999999999999988887  677777777            8888888766554443


Q ss_pred             CCC--CHHHHHHHHHHhhcccCCcH
Q 014212          171 DVI--TLDFVKKMMDDFKNQKCLHK  193 (429)
Q Consensus       171 ~~l--~~~~l~~li~~l~~~~~l~~  193 (429)
                      +.+  ....+....+.+.....++.
T Consensus       718 g~~~~~~~~~~~a~~~~~r~~~~~~  742 (987)
T PRK09782        718 PEQNQQRFNFRRLHEEVGRRWTFSF  742 (987)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCc
Confidence            321  22234555555555555444

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.45  E-value=1.9e-13  Score=128.93  Aligned_cols=179  Identities=21%  Similarity=0.261  Sum_probs=128.2

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   89 (429)
                      +|.....+..+|..|.+..+-++-...|.+|..++|.++.+|+.+|.+++-++++++|+..|+++++++|++..++..++
T Consensus       356 ~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~  435 (606)
T KOG0547|consen  356 DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLC  435 (606)
T ss_pred             CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHH
Confidence            44444457778888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCcc--------------------------
Q 014212           90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPES--------------------------  143 (429)
Q Consensus        90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~--------------------------  143 (429)
                      .+.++++++++++..|+.+.+.-|+.++.+...+.++...++  |.+|...|..                          
T Consensus       436 ~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqq--Fd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~  513 (606)
T KOG0547|consen  436 CALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQ--FDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL  513 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHh--HHHHHHHHHHHHhhccccccccccchhhhhhhHhhh
Confidence            888888888888888888888888888888888887766665  5555544332                          


Q ss_pred             ---ccccccccccccccccCCCCCCCcccCCC--CCHHHHHHHHHHhhcccC
Q 014212          144 ---ERHSVADSIDYQSIEVEPQYSGARIEGDV--ITLDFVKKMMDDFKNQKC  190 (429)
Q Consensus       144 ---~~~~~a~~~~~~~l~~~~~~~~~~~~~~~--l~~~~l~~li~~l~~~~~  190 (429)
                         ++...|.....++++++|....+....++  +..+.+++.++.|.+...
T Consensus       514 qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  514 QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence               23334555556677777766555444333  233445566666554433

>PRK12370 invasion protein regulator; Provisional

Probab=99.45  E-value=1.1e-12  Score=134.21  Aligned_cols=133  Identities=13%  Similarity=0.034  Sum_probs=110.1

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   87 (429)
                      ..+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..++++++++|.++.+++.
T Consensus       332 ~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~  411 (553)
T PRK12370        332 ELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGIT  411 (553)
T ss_pred             hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence            44677888888888888888888888888888888888888888888888888888888888888888888888877777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           88 RGAAYLAMGKFKEALKDFQQVKKLS-PNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        88 la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      ++.+++..|++++|+..++++++.. |+++.++..++.++..+|+  +++|...+.
T Consensus       412 ~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~--~~eA~~~~~  465 (553)
T PRK12370        412 KLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGK--HELARKLTK  465 (553)
T ss_pred             HHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCC--HHHHHHHHH
Confidence            7777777888888888888888775 7788888888888877777  666666655

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.44  E-value=2.2e-12  Score=121.93  Aligned_cols=153  Identities=26%  Similarity=0.321  Sum_probs=137.9

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 014212           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA   90 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~   90 (429)
                      ...+.++...|-.++-.|++-.|.+.++++++++|.+...|..+|.+|.+..+.++-.+.|.+|..++|++++.|+.+|+
T Consensus       323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQ  402 (606)
T KOG0547|consen  323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQ  402 (606)
T ss_pred             HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHH
Confidence            45578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHH-----HHHhhc---------------CCccccccccc
Q 014212           91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK-----FEEAIA---------------VPESERHSVAD  150 (429)
Q Consensus        91 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~-----~~~a~~---------------~~~~~~~~~a~  150 (429)
                      ++.-++++++|+..|+++++++|++.-++..++.+..+.++..     |++++.               +..+.++..|.
T Consensus       403 m~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~  482 (606)
T KOG0547|consen  403 MRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAV  482 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHH
Confidence            9999999999999999999999999999988888887777632     444443               23467888999


Q ss_pred             cccccccccCCCC
Q 014212          151 SIDYQSIEVEPQY  163 (429)
Q Consensus       151 ~~~~~~l~~~~~~  163 (429)
                      +.|..++++.|.-
T Consensus       483 k~YD~ai~LE~~~  495 (606)
T KOG0547|consen  483 KQYDKAIELEPRE  495 (606)
T ss_pred             HHHHHHHhhcccc
Confidence            9999999999883

>PRK12370 invasion protein regulator; Provisional

Probab=99.43  E-value=1.7e-12  Score=132.87  Aligned_cols=134  Identities=20%  Similarity=0.135  Sum_probs=118.3

Q ss_pred             CcccHhHHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 014212            7 ENSSVSRAEELKALANEAFRA---------KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI   77 (429)
Q Consensus         7 ~~~~p~~~~~~~~~a~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   77 (429)
                      ...+|+.+.++..+|.++...         +++++|+..++++++++|+++.++..+|.++...|++++|+..|++++++
T Consensus       288 l~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l  367 (553)
T PRK12370        288 VNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL  367 (553)
T ss_pred             HhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            355788888999999887643         44899999999999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           78 DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        78 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      +|+++.+++.+|.++..+|++++|+..++++++++|.++.+...++.++...++  +++|+..++
T Consensus       368 ~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~--~eeA~~~~~  430 (553)
T PRK12370        368 SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTG--IDDAIRLGD  430 (553)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccC--HHHHHHHHH
Confidence            999999999999999999999999999999999999998877666666655555  566666655

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.42  E-value=1.3e-12  Score=127.88  Aligned_cols=134  Identities=21%  Similarity=0.305  Sum_probs=111.2

Q ss_pred             CcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 014212            7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY   86 (429)
Q Consensus         7 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   86 (429)
                      -..+|..-.+|+.+|.+|.++++++.|.-.|++|++++|.+......+|..+.++|+.++|++.+++|+.++|.++-..+
T Consensus       482 l~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~  561 (638)
T KOG1126|consen  482 LGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY  561 (638)
T ss_pred             hcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence            34577788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        87 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      ..|.++..++++++|+..+++.-++.|+...+++.+|.++..+++  ...|+..+.
T Consensus       562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~--~~~Al~~f~  615 (638)
T KOG1126|consen  562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGN--TDLALLHFS  615 (638)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcc--chHHHHhhH
Confidence            888888888888888888888888888888888888888888887  445555444

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.41  E-value=7.5e-13  Score=119.94  Aligned_cols=157  Identities=22%  Similarity=0.273  Sum_probs=139.0

Q ss_pred             CcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 014212            7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY   86 (429)
Q Consensus         7 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   86 (429)
                      ...+|.+++.++.+|..++..|++..|+..|-.|++.+|++..+++.+|.+|..+|+-..|+..+.+++++.|++..+..
T Consensus        31 ~~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARi  110 (504)
T KOG0624|consen   31 STASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARI  110 (504)
T ss_pred             hcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHH
Confidence            34578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212           87 RRGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY  163 (429)
Q Consensus        87 ~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~  163 (429)
                      ..|.++.++|++++|...|.+.+..+|++   .++...++.+......  .......+..+....++......+++.|+-
T Consensus       111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l--~~ql~s~~~~GD~~~ai~~i~~llEi~~Wd  188 (504)
T KOG0624|consen  111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVL--VQQLKSASGSGDCQNAIEMITHLLEIQPWD  188 (504)
T ss_pred             HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHH--HHHHHHHhcCCchhhHHHHHHHHHhcCcch
Confidence            99999999999999999999999999954   4566666665554444  566777787888888888888999988865


Q ss_pred             CC
Q 014212          164 SG  165 (429)
Q Consensus       164 ~~  165 (429)
                      ..
T Consensus       189 a~  190 (504)
T KOG0624|consen  189 AS  190 (504)
T ss_pred             hH
Confidence            43

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.41  E-value=7.4e-12  Score=112.77  Aligned_cols=134  Identities=17%  Similarity=0.215  Sum_probs=119.9

Q ss_pred             CcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 014212            7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY   86 (429)
Q Consensus         7 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   86 (429)
                      .......+..+..+|..++..|++++|++.++++++.+|++..++..+|.++...|++++|++.++++++..|.+..++.
T Consensus        24 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  103 (234)
T TIGR02521        24 TTDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLN  103 (234)
T ss_pred             cccCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence            33445568899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           87 RRGAAYLAMGKFKEALKDFQQVKKLS--PNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        87 ~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      ++|.++..+|++++|+..+++++...  |.....+..++.++...++  +++|...+.
T Consensus       104 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~  159 (234)
T TIGR02521       104 NYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD--FDKAEKYLT  159 (234)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            99999999999999999999999864  4556778888888877776  667766666

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.40  E-value=3.6e-12  Score=131.47  Aligned_cols=132  Identities=6%  Similarity=-0.024  Sum_probs=124.3

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   88 (429)
                      .-|..+++++.+|.+....|.+++|...++.++++.|++..++.+++.++.+.+++++|+..+++++..+|+++.+++.+
T Consensus        81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~  160 (694)
T PRK15179         81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE  160 (694)
T ss_pred             hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence            35677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        89 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      |.++.++|++++|++.|++++..+|+++.++..++.+++..|+  .++|...++
T Consensus       161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~--~~~A~~~~~  212 (694)
T PRK15179        161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA--LWRARDVLQ  212 (694)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            9999999999999999999999999999999999999999998  455555554

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.39  E-value=3.8e-12  Score=132.56  Aligned_cols=121  Identities=16%  Similarity=0.151  Sum_probs=64.2

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 014212           11 VSRAEELKALANEAFRAKKYSQ----AIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY   86 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   86 (429)
                      |..+.++..+|..+...|++++    |+..|+++++++|+++.++..+|.++...|++++|+..+++++.++|+++.++.
T Consensus       243 p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~  322 (656)
T PRK15174        243 LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRA  322 (656)
T ss_pred             CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            4444455555555555555543    455555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212           87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (429)
Q Consensus        87 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  131 (429)
                      .+|.++..+|++++|+..|+++++.+|+++.+...++.++...|+
T Consensus       323 ~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~  367 (656)
T PRK15174        323 MYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGK  367 (656)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCC
Confidence            555555555555555555555555555554444444444444444

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.39  E-value=9.6e-12  Score=112.01  Aligned_cols=132  Identities=22%  Similarity=0.233  Sum_probs=121.9

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--CCChHHHH
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID--PRYPKGYY   86 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~   86 (429)
                      .+|..+.++..+|..+...|++++|++.|+++++..|.+..++.++|.++...|++++|++.+++++...  +.....+.
T Consensus        60 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  139 (234)
T TIGR02521        60 HDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLE  139 (234)
T ss_pred             hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHH
Confidence            4577788999999999999999999999999999999999999999999999999999999999999864  45677899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        87 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      .+|.++...|++++|...++++++.+|+++.++..++.++...++  +++|...++
T Consensus       140 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~  193 (234)
T TIGR02521       140 NAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ--YKDARAYLE  193 (234)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            999999999999999999999999999999999999999988887  777777766

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.38  E-value=3.7e-12  Score=132.72  Aligned_cols=124  Identities=15%  Similarity=0.083  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHH----HHHHHHHHHHhCCCChHHHHHHHHHH
Q 014212           17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGS----AIQDASKAIEIDPRYPKGYYRRGAAY   92 (429)
Q Consensus        17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~la~~~   92 (429)
                      ...++..+...|++++|+..|+++++.+|+++.++.++|.++..+|++++    |+..|+++++++|+++.++..+|.++
T Consensus       215 ~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l  294 (656)
T PRK15174        215 AGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADAL  294 (656)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            34567888999999999999999999999999999999999999999986    89999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        93 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      ..+|++++|+..++++++++|+++.++..++.++...|+  +++|+..++
T Consensus       295 ~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~--~~eA~~~l~  342 (656)
T PRK15174        295 IRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQ--YTAASDEFV  342 (656)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence            999999999999999999999999999999999988887  777777766

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.37  E-value=8.2e-12  Score=113.84  Aligned_cols=155  Identities=23%  Similarity=0.221  Sum_probs=128.7

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChH-
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA---VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK-   83 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-   83 (429)
                      +.++..+..++.+|..++..|++++|+..|+++++.+|+++   .+++.+|.++...|++++|+..++++++..|+++. 
T Consensus        27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  106 (235)
T TIGR03302        27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA  106 (235)
T ss_pred             CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence            56677889999999999999999999999999999999876   57899999999999999999999999999998876 


Q ss_pred             --HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHH---HHHHHHHHhHHHHHhhcCCccccccccc
Q 014212           84 --GYYRRGAAYLAM--------GKFKEALKDFQQVKKLSPNDPDAAQKV---KECEKAVKKLKFEEAIAVPESERHSVAD  150 (429)
Q Consensus        84 --~~~~la~~~~~~--------g~~~eA~~~~~~al~~~p~~~~~~~~l---~~~~~~~~~~~~~~a~~~~~~~~~~~a~  150 (429)
                        +++.+|.++...        |++++|+..|+++++.+|++..+...+   +..........+..|..++..++...|.
T Consensus       107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~  186 (235)
T TIGR03302       107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAI  186 (235)
T ss_pred             HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence              799999999987        889999999999999999997654333   3333333333345555666777777777


Q ss_pred             cccccccccCCC
Q 014212          151 SIDYQSIEVEPQ  162 (429)
Q Consensus       151 ~~~~~~l~~~~~  162 (429)
                      ..+.+++...|.
T Consensus       187 ~~~~~al~~~p~  198 (235)
T TIGR03302       187 NRFETVVENYPD  198 (235)
T ss_pred             HHHHHHHHHCCC
Confidence            777788877665

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.36  E-value=1.1e-11  Score=132.77  Aligned_cols=132  Identities=14%  Similarity=0.021  Sum_probs=123.1

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   88 (429)
                      .+|+ +.++..+|.++.+.|++++|+..|+++++++|+++.++.++|.++...|++++|+..|+++++++|+++.+++++
T Consensus       605 l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nL  683 (987)
T PRK09782        605 IAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQL  683 (987)
T ss_pred             hCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            3554 788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCcc
Q 014212           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPES  143 (429)
Q Consensus        89 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~  143 (429)
                      |.++..+|++++|+.+|+++++++|++..+....+.+.....+  ++.+...+.+
T Consensus       684 A~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~--~~~a~~~~~r  736 (987)
T PRK09782        684 AYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFN--FRRLHEEVGR  736 (987)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHH--HHHHHHHHHH
Confidence            9999999999999999999999999999999999988877665  7777776663

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.36  E-value=4.8e-12  Score=118.56  Aligned_cols=131  Identities=22%  Similarity=0.302  Sum_probs=106.5

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   89 (429)
                      .+.++..+..+|..+.+.|++++|++.|+++++.+|+++.++..++.++...|+++++...++......|+++..|..+|
T Consensus       142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la  221 (280)
T PF13429_consen  142 APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALA  221 (280)
T ss_dssp             --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999888888899999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      .++..+|++++|+..|+++++.+|+++.++..++.++...|+  .++|+.+..
T Consensus       222 ~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~--~~~A~~~~~  272 (280)
T PF13429_consen  222 AAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGR--KDEALRLRR  272 (280)
T ss_dssp             HHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred             HHhccccccccccccccccccccccccccccccccccccccc--ccccccccc
Confidence            999999999999999999999999999999999999999998  677777666

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=2.8e-11  Score=113.01  Aligned_cols=123  Identities=30%  Similarity=0.470  Sum_probs=110.9

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----C-----------HHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ----N-----------AVYYANRAFAHTKLEEYGSAIQDASKA   74 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~a   74 (429)
                      ....+......|+.+++.|+|..|...|++|+..-..    +           ..++.|++.|+.++++|.+|+..+.++
T Consensus       204 ~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kv  283 (397)
T KOG0543|consen  204 RLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKV  283 (397)
T ss_pred             HHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Confidence            4456777889999999999999999999999875321    1           356899999999999999999999999


Q ss_pred             HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Q 014212           75 IEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL  132 (429)
Q Consensus        75 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  132 (429)
                      |.++|.|..++|+.|.++..+|+|+.|+..|+++++++|+|..+...+..+.......
T Consensus       284 Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~  341 (397)
T KOG0543|consen  284 LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY  341 (397)
T ss_pred             HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998888777664

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.35  E-value=5.8e-12  Score=104.30  Aligned_cols=115  Identities=18%  Similarity=0.251  Sum_probs=106.4

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 014212           35 DLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN  114 (429)
Q Consensus        35 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~  114 (429)
                      +.|+++++.+|++..+.+.+|.++...|++++|...+++++..+|.++.+++.+|.++..+|++++|+..++++++.+|+
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212          115 DPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY  163 (429)
Q Consensus       115 ~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~  163 (429)
                      ++..++.++.++...++  +++|+..++            ++++.+|..
T Consensus        84 ~~~~~~~la~~~~~~g~--~~~A~~~~~------------~al~~~p~~  118 (135)
T TIGR02552        84 DPRPYFHAAECLLALGE--PESALKALD------------LAIEICGEN  118 (135)
T ss_pred             ChHHHHHHHHHHHHcCC--HHHHHHHHH------------HHHHhcccc
Confidence            99999999999998887  778877776            667666643

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.34  E-value=4.3e-11  Score=96.41  Aligned_cols=107  Identities=19%  Similarity=0.186  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHH
Q 014212           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYR   87 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~   87 (429)
                      ++.++.+|..+...|++++|+..|+++++..|++   +.+++.+|.++...|++++|+..|++++..+|++   +.+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            4678999999999999999999999999999876   6789999999999999999999999999999885   678999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014212           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ  120 (429)
Q Consensus        88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~  120 (429)
                      +|.++..+|++++|...++++++..|+++.+..
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  114 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL  114 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence            999999999999999999999999999887543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.34  E-value=3.3e-11  Score=106.22  Aligned_cols=134  Identities=17%  Similarity=0.172  Sum_probs=121.3

Q ss_pred             CcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 014212            7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY   86 (429)
Q Consensus         7 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   86 (429)
                      ...+|.+...+..+|...+..|+|..|+..++++..++|++..+|..+|.+|.+.|++++|...|.+++++.|..+.+..
T Consensus        93 ~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~n  172 (257)
T COG5010          93 AIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIAN  172 (257)
T ss_pred             hccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhh
Confidence            34567777788889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        87 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      |+|..|.-.|+++.|...+..+....+.+..+..+++.+....++  +.+|.....
T Consensus       173 Nlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~--~~~A~~i~~  226 (257)
T COG5010         173 NLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGD--FREAEDIAV  226 (257)
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCC--hHHHHhhcc
Confidence            999999999999999999999999988899999999999988888  555554444

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.32  E-value=4.1e-12  Score=122.63  Aligned_cols=120  Identities=15%  Similarity=0.284  Sum_probs=111.1

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA   91 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~   91 (429)
                      .++++...+|..|+-.|+|++|+.+|+.||..+|++...|..||..+....+.++|+..|++|+++.|.+..++|++|.+
T Consensus       428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS  507 (579)
T KOG1125|consen  428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGIS  507 (579)
T ss_pred             CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhh
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHHHh
Q 014212           92 YLAMGKFKEALKDFQQVKKLSPND----------PDAAQKVKECEKAVKK  131 (429)
Q Consensus        92 ~~~~g~~~eA~~~~~~al~~~p~~----------~~~~~~l~~~~~~~~~  131 (429)
                      +..+|.|+||+++|-.||.+.+..          ..+|..|..+...+++
T Consensus       508 ~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~  557 (579)
T KOG1125|consen  508 CMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNR  557 (579)
T ss_pred             hhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCC
Confidence            999999999999999999997651          2477777777766666

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.32  E-value=3.5e-11  Score=101.43  Aligned_cols=117  Identities=36%  Similarity=0.597  Sum_probs=106.8

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG   84 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~   84 (429)
                      ....+..+...|+.+|..|+|++|...|..||+..|..     .-.|.++|.|+++++.++.|+..+.+||+++|.+..+
T Consensus        91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kA  170 (271)
T KOG4234|consen   91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKA  170 (271)
T ss_pred             HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHH
Confidence            45677889999999999999999999999999999985     4568899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014212           85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE  126 (429)
Q Consensus        85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~  126 (429)
                      +.+.|.+|.++.++++|++.|++.++.+|...++...++.+-
T Consensus       171 l~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~  212 (271)
T KOG4234|consen  171 LERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLP  212 (271)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcC
Confidence            999999999999999999999999999999887766555443

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.30  E-value=2e-11  Score=117.89  Aligned_cols=166  Identities=19%  Similarity=0.197  Sum_probs=137.8

Q ss_pred             CCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-------
Q 014212            6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-------   78 (429)
Q Consensus         6 ~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------   78 (429)
                      +-.++|.++++|..+|.+....++-..|+..+++|++++|++..++..||..|...|.-.+|+.++.+-+...       
T Consensus       311 AVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~  390 (579)
T KOG1125|consen  311 AVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLV  390 (579)
T ss_pred             HHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhcc
Confidence            3467999999999999999999999999999999999999999999999999999998888988888765432       


Q ss_pred             ----------------------------------C--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014212           79 ----------------------------------P--RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKV  122 (429)
Q Consensus        79 ----------------------------------p--~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l  122 (429)
                                                        |  .+++....||.+|...|+|++|+.+|+.||..+|++...|..|
T Consensus       391 ~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRL  470 (579)
T KOG1125|consen  391 SAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRL  470 (579)
T ss_pred             ccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHh
Confidence                                              3  4567889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCCcccCCC--CCHHHHHHHHHHh
Q 014212          123 KECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDV--ITLDFVKKMMDDF  185 (429)
Q Consensus       123 ~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~--l~~~~l~~li~~l  185 (429)
                      |-.+.--.              +..+|+..|.+++++.|.|..++.+.+.  |-+...++.+.++
T Consensus       471 GAtLAN~~--------------~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hl  521 (579)
T KOG1125|consen  471 GATLANGN--------------RSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHL  521 (579)
T ss_pred             hHHhcCCc--------------ccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence            87664433              3445555555999999999999888763  4444444444443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.29  E-value=8.5e-12  Score=138.36  Aligned_cols=156  Identities=16%  Similarity=0.213  Sum_probs=126.8

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHhhCHHHHHHHHHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAV--------------YYANRAFAHTKLEEYGSAIQDASK   73 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~lg~~~~~~g~~~~A~~~~~~   73 (429)
                      ..+|.++.++..+|.+++++|++++|+..|+++++.+|++..              ....+|.++...|++++|+..|++
T Consensus       297 ~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~  376 (1157)
T PRK11447        297 RANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQ  376 (1157)
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            346777888999999999999999999999999998887642              123457788889999999999999


Q ss_pred             HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhh---------------
Q 014212           74 AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAI---------------  138 (429)
Q Consensus        74 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~---------------  138 (429)
                      +++++|+++.+++.+|.++..+|++++|++.|+++++++|++..++..++.++... +  .++|+               
T Consensus       377 Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~-~--~~~A~~~l~~l~~~~~~~~~  453 (1157)
T PRK11447        377 ARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQ-S--PEKALAFIASLSASQRRSID  453 (1157)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-C--HHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988888776432 1  22222               


Q ss_pred             ----------------cCCccccccccccccccccccCCCCCCC
Q 014212          139 ----------------AVPESERHSVADSIDYQSIEVEPQYSGA  166 (429)
Q Consensus       139 ----------------~~~~~~~~~~a~~~~~~~l~~~~~~~~~  166 (429)
                                      .+...++..+|...+.++++.+|+....
T Consensus       454 ~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~  497 (1157)
T PRK11447        454 DIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWL  497 (1157)
T ss_pred             HHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence                            2334577788888888999998886544

>PLN02789 farnesyltranstransferase

Probab=99.29  E-value=5.9e-11  Score=112.04  Aligned_cols=154  Identities=12%  Similarity=0.067  Sum_probs=120.9

Q ss_pred             cccHhHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCH--HHHHHHHHHHHHhCCCChHH
Q 014212            8 NSSVSRAEELKALANEAFRAK-KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEY--GSAIQDASKAIEIDPRYPKG   84 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~p~~~~~   84 (429)
                      ..+|....+|..++.++...| ++++|+..++++++.+|++..+|..++.++..+++.  ++++.++.++++.+|++..+
T Consensus        65 ~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~A  144 (320)
T PLN02789         65 RLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHA  144 (320)
T ss_pred             HHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHH
Confidence            457888889999999998888 678999999999999999999999999888888864  67888899999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCC
Q 014212           85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYS  164 (429)
Q Consensus        85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~  164 (429)
                      |..++.++..+|++++|++++.++++.+|.+..++..++.+...++..      .-++ .....+.....+++..+|.+.
T Consensus       145 W~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l------~~~~-~~~e~el~y~~~aI~~~P~N~  217 (320)
T PLN02789        145 WSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLL------GGLE-AMRDSELKYTIDAILANPRNE  217 (320)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccc------cccc-ccHHHHHHHHHHHHHhCCCCc
Confidence            999999999999999999999999999999999999888776544210      0000 011123333347788888877


Q ss_pred             CCcc
Q 014212          165 GARI  168 (429)
Q Consensus       165 ~~~~  168 (429)
                      .+..
T Consensus       218 SaW~  221 (320)
T PLN02789        218 SPWR  221 (320)
T ss_pred             CHHH
Confidence            6643

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.29  E-value=1.2e-10  Score=100.76  Aligned_cols=111  Identities=21%  Similarity=0.292  Sum_probs=100.9

Q ss_pred             CCCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC
Q 014212            5 ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY   81 (429)
Q Consensus         5 ~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   81 (429)
                      .....++..+..++.+|..+...|++++|+.+|+++++..|+.   ..++.++|.++..+|++++|+..+++++...|.+
T Consensus        26 ~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  105 (172)
T PRK02603         26 LPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ  105 (172)
T ss_pred             cccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            3456678889999999999999999999999999999987763   5789999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCC
Q 014212           82 PKGYYRRGAAYLAMGK--------------FKEALKDFQQVKKLSPND  115 (429)
Q Consensus        82 ~~~~~~la~~~~~~g~--------------~~eA~~~~~~al~~~p~~  115 (429)
                      ..++..+|.++..+|+              +++|.+.+++++..+|++
T Consensus       106 ~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        106 PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            9999999999999988              678888888888888887

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.28  E-value=3.5e-11  Score=113.38  Aligned_cols=123  Identities=18%  Similarity=0.131  Sum_probs=110.4

Q ss_pred             hcCHHHHHHHHHHHHHhCC---C-CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Q 014212           27 AKKYSQAIDLYSQAIELNS---Q-NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL  102 (429)
Q Consensus        27 ~g~~~~A~~~~~~al~~~p---~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~  102 (429)
                      .+..+.++..+.+++...|   . .+..|+.+|.++...|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            4567889999999996443   3 37789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212          103 KDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY  163 (429)
Q Consensus       103 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~  163 (429)
                      ..|+++++++|++..++.++|.++...++  +++|+..++            ++++.+|..
T Consensus       119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~--~~eA~~~~~------------~al~~~P~~  165 (296)
T PRK11189        119 EAFDSVLELDPTYNYAYLNRGIALYYGGR--YELAQDDLL------------AFYQDDPND  165 (296)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHH------------HHHHhCCCC
Confidence            99999999999999999999999988887  778877777            777777765

>PRK15331 chaperone protein SicA; Provisional

Probab=99.28  E-value=1.9e-10  Score=95.34  Aligned_cols=115  Identities=17%  Similarity=0.113  Sum_probs=106.5

Q ss_pred             CCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 014212            6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY   85 (429)
Q Consensus         6 ~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~   85 (429)
                      .....++..+..+..|..++.+|++++|...|+-+...+|.++..|..||.|+..+++|++|+..|..|..++++++.+.
T Consensus        29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~  108 (165)
T PRK15331         29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV  108 (165)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence            34567788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014212           86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK  121 (429)
Q Consensus        86 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~  121 (429)
                      +..|.||..+|+.++|..+|+.++. .|.+......
T Consensus       109 f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~  143 (165)
T PRK15331        109 FFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAK  143 (165)
T ss_pred             chHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHH
Confidence            9999999999999999999999999 5776654433

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.27  E-value=2.2e-10  Score=115.79  Aligned_cols=130  Identities=12%  Similarity=0.123  Sum_probs=123.0

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 014212           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA   90 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~   90 (429)
                      +..+..+...|+.++..|++++|.+.+.++++++|.++.+|+.||.+|.++|+.++|...+-.|-.++|.+.+.|..++.
T Consensus       136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~lad  215 (895)
T KOG2076|consen  136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLAD  215 (895)
T ss_pred             CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence            44588999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        91 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      ...++|.+++|.-+|.+|++.+|.+.........++..+|+  ..+|...+.
T Consensus       216 ls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~--~~~Am~~f~  265 (895)
T KOG2076|consen  216 LSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGD--LKRAMETFL  265 (895)
T ss_pred             HHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCh--HHHHHHHHH
Confidence            99999999999999999999999999999999999999988  566666666

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.27  E-value=9.3e-11  Score=89.25  Aligned_cols=99  Identities=39%  Similarity=0.664  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 014212           16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM   95 (429)
Q Consensus        16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~   95 (429)
                      +++.+|..++..|++++|+..++++++..|.+..++..+|.++...+++++|++.+++++...|.+..++..+|.++..+
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCC
Q 014212           96 GKFKEALKDFQQVKKLSPN  114 (429)
Q Consensus        96 g~~~eA~~~~~~al~~~p~  114 (429)
                      |++++|...+.++++..|+
T Consensus        82 ~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          82 GKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HhHHHHHHHHHHHHccCCC
Confidence            9999999999999988774

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.26  E-value=2.9e-11  Score=87.54  Aligned_cols=66  Identities=36%  Similarity=0.617  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 014212           48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMG-KFKEALKDFQQVKKLSP  113 (429)
Q Consensus        48 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~p  113 (429)
                      +..|..+|.+++..|++++|+.+|+++++++|+++.+|+++|.++..+| ++++|+++++++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4455555555555555555555555555555555555555555555555 45555555555555554

...

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.26  E-value=1.3e-10  Score=105.88  Aligned_cols=131  Identities=18%  Similarity=0.185  Sum_probs=115.0

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHh--------hCHHHHHHHHHHHHHhC
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAV---YYANRAFAHTKL--------EEYGSAIQDASKAIEID   78 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~   78 (429)
                      +|....+++.+|..++..|++++|+..|+++++..|+++.   +++.+|.++...        |++++|++.+++++..+
T Consensus        66 ~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  145 (235)
T TIGR03302        66 SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY  145 (235)
T ss_pred             chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC
Confidence            3445578999999999999999999999999999998765   789999999987        89999999999999999


Q ss_pred             CCChHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHhHHHHHhh
Q 014212           79 PRYPKGY-----------------YRRGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQKVKECEKAVKKLKFEEAI  138 (429)
Q Consensus        79 p~~~~~~-----------------~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~~~a~  138 (429)
                      |++..++                 ..+|.+|..+|++.+|+..|+++++..|+.   ++++..++.++..+++  +++|.
T Consensus       146 p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~--~~~A~  223 (235)
T TIGR03302       146 PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL--KDLAQ  223 (235)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC--HHHHH
Confidence            9986542                 467889999999999999999999997764   5899999999999998  77777


Q ss_pred             cCCc
Q 014212          139 AVPE  142 (429)
Q Consensus       139 ~~~~  142 (429)
                      .+++
T Consensus       224 ~~~~  227 (235)
T TIGR03302       224 DAAA  227 (235)
T ss_pred             HHHH
Confidence            6554

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.25  E-value=2.7e-11  Score=87.69  Aligned_cols=67  Identities=39%  Similarity=0.584  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHhCC
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-EYGSAIQDASKAIEIDP   79 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p   79 (429)
                      ++..+..+|..++..|+|++|+..|+++++.+|+++.+++++|.+++.+| ++++|+.+++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            57899999999999999999999999999999999999999999999999 79999999999999998

...

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.24  E-value=5.4e-11  Score=98.24  Aligned_cols=103  Identities=17%  Similarity=0.168  Sum_probs=94.4

Q ss_pred             HHHHHhC-CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 014212           38 SQAIELN-SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP  116 (429)
Q Consensus        38 ~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~  116 (429)
                      ..+..+. +++....+.+|..+++.|++++|.+.|+.+..++|.+...|++||.++..+|++.+|+..|.+|+.++|++|
T Consensus        24 ~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp  103 (157)
T PRK15363         24 RMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP  103 (157)
T ss_pred             HHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence            3344567 788889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212          117 DAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus       117 ~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      .+.++.|.++..+|+  .+.|...++
T Consensus       104 ~~~~~ag~c~L~lG~--~~~A~~aF~  127 (157)
T PRK15363        104 QAPWAAAECYLACDN--VCYAIKALK  127 (157)
T ss_pred             hHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            999999999999998  566666655

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.23  E-value=3.4e-11  Score=108.16  Aligned_cols=101  Identities=28%  Similarity=0.452  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014212           50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV  129 (429)
Q Consensus        50 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~  129 (429)
                      -+-.-|.-+++.++|++|+..|.+||+++|.++-.|++.|.+|.++|+++.|++.++.|+.++|.+..+|..++.++..+
T Consensus        83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~  162 (304)
T KOG0553|consen   83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLAL  162 (304)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc
Confidence            35566888899999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HhHHHHHhhcCCccccccccccccccccccCCCCC
Q 014212          130 KKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYS  164 (429)
Q Consensus       130 ~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~  164 (429)
                      ++  +++|+..|.            ++++++|.+.
T Consensus       163 gk--~~~A~~ayk------------KaLeldP~Ne  183 (304)
T KOG0553|consen  163 GK--YEEAIEAYK------------KALELDPDNE  183 (304)
T ss_pred             Cc--HHHHHHHHH------------hhhccCCCcH
Confidence            87  777777766            8999999874

>PLN02789 farnesyltranstransferase

Probab=99.23  E-value=2e-10  Score=108.48  Aligned_cols=145  Identities=15%  Similarity=0.149  Sum_probs=127.7

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-EYGSAIQDASKAIEIDPRYPKGYYRRG   89 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la   89 (429)
                      ++-.+++-.+--++...+++++|+..+.++++++|++..+|..++.++..++ ++++|+..+.++++.+|++..+|+.++
T Consensus        34 ~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~  113 (320)
T PLN02789         34 PEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRR  113 (320)
T ss_pred             HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHH
Confidence            4445555455555677889999999999999999999999999999999998 689999999999999999999999999


Q ss_pred             HHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCCc
Q 014212           90 AAYLAMGKF--KEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGAR  167 (429)
Q Consensus        90 ~~~~~~g~~--~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~  167 (429)
                      .++..+|+.  ++++.+++++++.+|++..+|...+.+...+++  +++++..+.            ++++.+|.+..+.
T Consensus       114 ~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~--~~eeL~~~~------------~~I~~d~~N~sAW  179 (320)
T PLN02789        114 WLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGG--WEDELEYCH------------QLLEEDVRNNSAW  179 (320)
T ss_pred             HHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhh--HHHHHHHHH------------HHHHHCCCchhHH
Confidence            999999974  788999999999999999999999999999987  777887777            8888888887664


Q ss_pred             cc
Q 014212          168 IE  169 (429)
Q Consensus       168 ~~  169 (429)
                      ..
T Consensus       180 ~~  181 (320)
T PLN02789        180 NQ  181 (320)
T ss_pred             HH
Confidence            43

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=9.9e-11  Score=112.32  Aligned_cols=112  Identities=32%  Similarity=0.572  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 014212           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA   94 (429)
Q Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   94 (429)
                      ......|+..+..|+|+.|+.+|..++.++|.+...|.++..+|..+|+|++|++...+.++++|+.+.+|.++|.++.-
T Consensus         3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~   82 (539)
T KOG0548|consen    3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG   82 (539)
T ss_pred             hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014212           95 MGKFKEALKDFQQVKKLSPNDPDAAQKVKECE  126 (429)
Q Consensus        95 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~  126 (429)
                      +|+|++|+..|.+.|+.+|++..+...++.++
T Consensus        83 lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   83 LGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             cccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            99999999999999999999999999999888

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.21  E-value=6.5e-10  Score=109.16  Aligned_cols=131  Identities=12%  Similarity=0.010  Sum_probs=79.5

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY   85 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~   85 (429)
                      +|.++.++..+|..+...|++++|+..++++++..+..    ..++..+|.++...|++++|+..|+++++.+|.+..++
T Consensus        65 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~  144 (389)
T PRK11788         65 DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGAL  144 (389)
T ss_pred             CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHH
Confidence            45556666666666666666666666666666543222    24456666666666666666666666666666666666


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD-----AAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        86 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~-----~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      ..++.++...|++++|++.++++++..|.+..     .+..++.++...++  +++|+..++
T Consensus       145 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~  204 (389)
T PRK11788        145 QQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD--LDAARALLK  204 (389)
T ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC--HHHHHHHHH
Confidence            66666666666666666666666666655422     23344444444444  555555555

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.20  E-value=2.8e-10  Score=120.99  Aligned_cols=130  Identities=15%  Similarity=0.205  Sum_probs=119.6

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   89 (429)
                      +|..+.++..+|..+...|++++|++.|+++++.+|.++.++..+|.++...|++++|+..++++++.+|+++. ++.+|
T Consensus        45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la  123 (765)
T PRK10049         45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALA  123 (765)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Confidence            56677889999999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      .++..+|++++|+..++++++..|+++.++..++.++...+.  .++|+..++
T Consensus       124 ~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~--~e~Al~~l~  174 (765)
T PRK10049        124 YVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL--SAPALGAID  174 (765)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--hHHHHHHHH
Confidence            999999999999999999999999999999999988876555  455554443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.19  E-value=2.4e-10  Score=123.53  Aligned_cols=133  Identities=18%  Similarity=0.196  Sum_probs=123.1

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   87 (429)
                      ...+..+..+..+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|++.+++++..+|.+..++..
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  198 (899)
T TIGR02917       119 LDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLL  198 (899)
T ss_pred             CCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            35677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      +|.++...|++++|...|+++++.+|+++.++..++.++...++  +++|...++
T Consensus       199 ~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~--~~~A~~~~~  251 (899)
T TIGR02917       199 KGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGE--FEEAEKHAD  251 (899)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            99999999999999999999999999999999999999888776  566655444

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.19  E-value=2.2e-10  Score=123.93  Aligned_cols=130  Identities=22%  Similarity=0.238  Sum_probs=88.3

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   89 (429)
                      .|++..++..+|..+...|++++|+..|+++++..|+++.++.++|.++...|+ .+|+..+++++.+.|+++..+..+|
T Consensus       766 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~  844 (899)
T TIGR02917       766 HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLG  844 (899)
T ss_pred             CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHH
Confidence            455566666667777777777777777777777777766666677777766666 6677777777777777766666777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      .++..+|++++|+..|+++++.+|.++.++..++.++...|+  +++|...++
T Consensus       845 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~  895 (899)
T TIGR02917       845 WLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGR--KAEARKELD  895 (899)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            777777777777777777777777777777777666666665  555555443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.19  E-value=2.2e-10  Score=127.21  Aligned_cols=122  Identities=20%  Similarity=0.223  Sum_probs=111.0

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH--------------
Q 014212           19 ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG--------------   84 (429)
Q Consensus        19 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~--------------   84 (429)
                      .+|..+...|++++|+..|+++++.+|+++.++..+|.++.++|++++|+..|+++++.+|++...              
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~  353 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL  353 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence            458899999999999999999999999999999999999999999999999999999999986531              


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      ...+|.++...|++++|+..|+++++++|+++.++..++.++...++  +++|+..++
T Consensus       354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~--~~eA~~~y~  409 (1157)
T PRK11447        354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKD--YAAAERYYQ  409 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence            23458889999999999999999999999999999999999988887  777777766

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.18  E-value=1.5e-10  Score=105.19  Aligned_cols=114  Identities=36%  Similarity=0.492  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 014212           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL   93 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   93 (429)
                      ...+...|+.|+++|.|++|+.+|.+++..+|.++..+.++|.+|++++.|..|...|..|+.++.....+|.+.|.+-.
T Consensus        97 ~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~  176 (536)
T KOG4648|consen   97 ASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARE  176 (536)
T ss_pred             hHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            34467899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014212           94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK  127 (429)
Q Consensus        94 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~  127 (429)
                      .+|+..+|.+.++.++++.|++.+....++.+..
T Consensus       177 ~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S  210 (536)
T KOG4648|consen  177 SLGNNMEAKKDCETVLALEPKNIELKKSLARINS  210 (536)
T ss_pred             HHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence            9999999999999999999998887666655443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.17  E-value=7.5e-11  Score=89.01  Aligned_cols=82  Identities=29%  Similarity=0.489  Sum_probs=73.9

Q ss_pred             HhcCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 014212           26 RAKKYSQAIDLYSQAIELNSQ--NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALK  103 (429)
Q Consensus        26 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~  103 (429)
                      .+|+|++|+..|+++++..|.  +...++.+|.|++++|++++|+..+++ ...+|.+...++.+|.++.++|++++|+.
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            368999999999999999995  467788899999999999999999999 88888888999999999999999999999


Q ss_pred             HHHHH
Q 014212          104 DFQQV  108 (429)
Q Consensus       104 ~~~~a  108 (429)
                      .|++|
T Consensus        80 ~l~~~   84 (84)
T PF12895_consen   80 ALEKA   84 (84)
T ss_dssp             HHHHH
T ss_pred             HHhcC
Confidence            99875

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.17  E-value=6.6e-10  Score=109.10  Aligned_cols=128  Identities=20%  Similarity=0.279  Sum_probs=79.6

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA-----VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG   84 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~   84 (429)
                      .|....++..++..+...|++++|++.++++++..|.+.     ..+..+|.++...|++++|+..|+++++.+|++..+
T Consensus       137 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  216 (389)
T PRK11788        137 GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRA  216 (389)
T ss_pred             CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHH
Confidence            444556666666666666666666666666666665542     244556666666666666666666666666666666


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHhHHHHHhhc
Q 014212           85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPND-PDAAQKVKECEKAVKKLKFEEAIA  139 (429)
Q Consensus        85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~~~a~~  139 (429)
                      ++.+|.++...|++++|++.++++++.+|++ ..++..++.++...++  +++|+.
T Consensus       217 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~--~~~A~~  270 (389)
T PRK11788        217 SILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD--EAEGLE  270 (389)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC--HHHHHH
Confidence            6666666666666666666666666666654 2345555555555554  344443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.16  E-value=9.9e-10  Score=94.60  Aligned_cols=109  Identities=20%  Similarity=0.213  Sum_probs=94.8

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ---NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG   84 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~   84 (429)
                      ......+..++.+|..+...|++++|+..|++++.+.|+   .+.++.++|.++...|++++|+..+++++.++|.+...
T Consensus        29 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~  108 (168)
T CHL00033         29 TSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQA  108 (168)
T ss_pred             CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Confidence            445556888999999999999999999999999998776   34689999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-------HcCCHH-------HHHHHHHHHHHhCCCCH
Q 014212           85 YYRRGAAYL-------AMGKFK-------EALKDFQQVKKLSPNDP  116 (429)
Q Consensus        85 ~~~la~~~~-------~~g~~~-------eA~~~~~~al~~~p~~~  116 (429)
                      +.++|.++.       .+|+++       +|+..|++++..+|++.
T Consensus       109 ~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        109 LNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            999999999       777766       66666777777888654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.15  E-value=1.2e-10  Score=118.50  Aligned_cols=164  Identities=16%  Similarity=0.160  Sum_probs=143.8

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY   86 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   86 (429)
                      ..+|.++-++...|.+.+..|+|..|+.+|++++.++|.. +.....+|.|+.++++.+.|+..|++|++++|.+..++.
T Consensus       158 ~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv  237 (1018)
T KOG2002|consen  158 KQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALV  237 (1018)
T ss_pred             hhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHH
Confidence            4678899999999999999999999999999999999985 667788999999999999999999999999999999999


Q ss_pred             HHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHH-----------------------HHHhhcC
Q 014212           87 RRGAAYLAMG---KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK-----------------------FEEAIAV  140 (429)
Q Consensus        87 ~la~~~~~~g---~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~-----------------------~~~a~~~  140 (429)
                      .||.+-....   .+..|+..+.++...+|++|.++..++.-+...+++.                       |..|..+
T Consensus       238 ~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~  317 (1018)
T KOG2002|consen  238 ALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSY  317 (1018)
T ss_pred             HHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            9998777665   4678999999999999999999999998877666653                       6667777


Q ss_pred             CccccccccccccccccccCCCC-CCCcccCC
Q 014212          141 PESERHSVADSIDYQSIEVEPQY-SGARIEGD  171 (429)
Q Consensus       141 ~~~~~~~~a~~~~~~~l~~~~~~-~~~~~~~~  171 (429)
                      +.+++++.|..+|.+++..++++ .-+....+
T Consensus       318 Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Glg  349 (1018)
T KOG2002|consen  318 HAQGDFEKAFKYYMESLKADNDNFVLPLVGLG  349 (1018)
T ss_pred             HhhccHHHHHHHHHHHHccCCCCccccccchh
Confidence            88999999999999999988887 44444433

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.14  E-value=9.8e-10  Score=96.23  Aligned_cols=149  Identities=16%  Similarity=0.130  Sum_probs=130.3

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   89 (429)
                      -|.........|..+-..|+|++|+++|+..++-+|.+..++...-.+...+|+.-+|++.+..-++..+.+.++|..++
T Consensus        82 fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLa  161 (289)
T KOG3060|consen   82 FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELA  161 (289)
T ss_pred             CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            46667777788999999999999999999999999999999998888888899999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHH-HHHhhcCCccccccccccccccccccCCCCCCCcc
Q 014212           90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK-FEEAIAVPESERHSVADSIDYQSIEVEPQYSGARI  168 (429)
Q Consensus        90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~-~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~  168 (429)
                      .+|...|+|++|.-++++.+-+.|.++-.+..++.++..+|..+ .+.|..+|+            ++++++|.+..+.+
T Consensus       162 eiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~------------~alkl~~~~~ral~  229 (289)
T KOG3060|consen  162 EIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYE------------RALKLNPKNLRALF  229 (289)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH------------HHHHhChHhHHHHH
Confidence            99999999999999999999999999999999999988777643 444555555            88888886655544


Q ss_pred             cC
Q 014212          169 EG  170 (429)
Q Consensus       169 ~~  170 (429)
                      +.
T Consensus       230 GI  231 (289)
T KOG3060|consen  230 GI  231 (289)
T ss_pred             HH
Confidence            43

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.14  E-value=6.1e-10  Score=98.33  Aligned_cols=132  Identities=17%  Similarity=0.228  Sum_probs=122.4

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   87 (429)
                      ..+|++..+ ..++..+...|+-+.++.+..++....|.+......+|...++.|+|.+|+..++++..+.|+++++|.-
T Consensus        61 ~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~  139 (257)
T COG5010          61 LRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL  139 (257)
T ss_pred             hcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence            457777888 9999999999999999999999999999999999889999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      +|.+|.+.|++++|...|.+++++.|+++.+..+++..+...++  ++.|..+..
T Consensus       140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd--~~~A~~lll  192 (257)
T COG5010         140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD--LEDAETLLL  192 (257)
T ss_pred             HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC--HHHHHHHHH
Confidence            99999999999999999999999999999999999999998888  566655544

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.13  E-value=2.3e-10  Score=107.44  Aligned_cols=173  Identities=17%  Similarity=0.154  Sum_probs=136.5

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   88 (429)
                      .+.-++.++.+.|+..+..|++++|.+.|++|+..+..-..+++++|..+..+|++++|+++|-+...+--+++++++.+
T Consensus       485 ~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qi  564 (840)
T KOG2003|consen  485 IDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQI  564 (840)
T ss_pred             ccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            34456778888999999999999999999999998888899999999999999999999999999988888999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCC--
Q 014212           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA--  166 (429)
Q Consensus        89 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~--  166 (429)
                      |.+|..+.+..+|++.+.++..+-|++|.++..++.++-+.|+  ...|..++-            ....-.|-+...  
T Consensus       565 aniye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegd--ksqafq~~y------------dsyryfp~nie~ie  630 (840)
T KOG2003|consen  565 ANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGD--KSQAFQCHY------------DSYRYFPCNIETIE  630 (840)
T ss_pred             HHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccc--hhhhhhhhh------------hcccccCcchHHHH
Confidence            9999999999999999999999999999999999999988886  344444332            222222322222  


Q ss_pred             cccCCCCCHHHHHHHHHHhhcccCCcHHH
Q 014212          167 RIEGDVITLDFVKKMMDDFKNQKCLHKRY  195 (429)
Q Consensus       167 ~~~~~~l~~~~l~~li~~l~~~~~l~~~~  195 (429)
                      ++...++..++.++.+..+.+...+.+..
T Consensus       631 wl~ayyidtqf~ekai~y~ekaaliqp~~  659 (840)
T KOG2003|consen  631 WLAAYYIDTQFSEKAINYFEKAALIQPNQ  659 (840)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHhcCccH
Confidence            22222245555666666666655555443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=4.8e-10  Score=104.32  Aligned_cols=124  Identities=30%  Similarity=0.519  Sum_probs=111.7

Q ss_pred             CcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh
Q 014212            7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP   82 (429)
Q Consensus         7 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~   82 (429)
                      +...|.....+...|+..++.|+|.+|-+.|..+|.++|++    +..|.++|.+...+|+..+|+..++.|+.++|...
T Consensus       242 ~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syi  321 (486)
T KOG0550|consen  242 ASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYI  321 (486)
T ss_pred             HhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHH
Confidence            34567888999999999999999999999999999999995    67799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212           83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (429)
Q Consensus        83 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  131 (429)
                      .++...|.|+..++++++|++.|++|++...+ .+....+..+...+.+
T Consensus       322 kall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkk  369 (486)
T KOG0550|consen  322 KALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKK  369 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999877 6666666666555553

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.12  E-value=1.7e-09  Score=103.19  Aligned_cols=122  Identities=20%  Similarity=0.214  Sum_probs=118.4

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 014212           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA   90 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~   90 (429)
                      |....++|..|..++..|++++|+..++..++..|+|+.++...+.+++..++.++|.+.+++++.++|..+-.+.++|.
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            57788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Q 014212           91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL  132 (429)
Q Consensus        91 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  132 (429)
                      +|.+.|++.+|+..++..+..+|+++..|..|+..+..+|+.
T Consensus       383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~  424 (484)
T COG4783         383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNR  424 (484)
T ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCch
Confidence            999999999999999999999999999999999999998873

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=4.3e-10  Score=108.44  Aligned_cols=131  Identities=21%  Similarity=0.315  Sum_probs=111.5

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC----C---CChHHHHHHHHH
Q 014212           19 ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID----P---RYPKGYYRRGAA   91 (429)
Q Consensus        19 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p---~~~~~~~~la~~   91 (429)
                      -+|..|.+.++++.|.+.|.+|+.+.|.++..+..+|.+.+..+.|.+|..+|++++..-    +   .....+.+||.+
T Consensus       385 Ylgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~  464 (611)
T KOG1173|consen  385 YLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA  464 (611)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH
Confidence            466677778888888888888888899999999999999999999999999999988432    1   133458899999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212           92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY  163 (429)
Q Consensus        92 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~  163 (429)
                      +++++++++|+.+|++++.+.|.++.++..+|.++..+|+  ++.|+..+.            +++.+.|..
T Consensus       465 ~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgn--ld~Aid~fh------------KaL~l~p~n  522 (611)
T KOG1173|consen  465 YRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGN--LDKAIDHFH------------KALALKPDN  522 (611)
T ss_pred             HHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC--hHHHHHHHH------------HHHhcCCcc
Confidence            9999999999999999999999999999999999999998  888888887            777777664

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=2e-09  Score=97.53  Aligned_cols=115  Identities=20%  Similarity=0.170  Sum_probs=103.9

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh---CHHHHHHHHHHHHHhCCCChHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE---EYGSAIQDASKAIEIDPRYPKG   84 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~   84 (429)
                      ..+|++++-|..+|.+|+.+|++..|...|.+|+++.|+++..+..+|.+++.+.   ...++.+.+++++..||.+..+
T Consensus       150 ~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira  229 (287)
T COG4235         150 QQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA  229 (287)
T ss_pred             HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence            4589999999999999999999999999999999999999999999999987764   4668999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014212           85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKV  122 (429)
Q Consensus        85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l  122 (429)
                      .+.||..+.++|+|.+|...+++.++..|.+..-...+
T Consensus       230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i  267 (287)
T COG4235         230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI  267 (287)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence            99999999999999999999999999988765544333

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.10  E-value=3.8e-10  Score=80.58  Aligned_cols=62  Identities=23%  Similarity=0.349  Sum_probs=30.0

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC
Q 014212           20 LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY   81 (429)
Q Consensus        20 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   81 (429)
                      +|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|++
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            44444455555555555555555555555555555555555555555555555555444443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.10  E-value=3.6e-10  Score=80.73  Aligned_cols=65  Identities=28%  Similarity=0.501  Sum_probs=60.8

Q ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 014212           52 ANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP  116 (429)
Q Consensus        52 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~  116 (429)
                      +.+|..+++.|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|+++++.+|++|
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            36799999999999999999999999999999999999999999999999999999999999986

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.09  E-value=4.1e-09  Score=96.69  Aligned_cols=109  Identities=15%  Similarity=0.062  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC---ChHHH
Q 014212           13 RAEELKALANEA-FRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR---YPKGY   85 (429)
Q Consensus        13 ~~~~~~~~a~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~   85 (429)
                      .....+..|..+ ++.|+|++|+..|++.++..|++   +.+++.+|.+|+..|++++|+..|++++...|+   .++++
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl  220 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM  220 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence            457788888876 67899999999999999999998   589999999999999999999999999999887   47899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014212           86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK  121 (429)
Q Consensus        86 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~  121 (429)
                      +.+|.++..+|++++|...|+++++..|+...+...
T Consensus       221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A  256 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQA  256 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence            999999999999999999999999999998865443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.08  E-value=5.2e-09  Score=95.36  Aligned_cols=192  Identities=18%  Similarity=0.163  Sum_probs=143.5

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 014212           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA   94 (429)
Q Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   94 (429)
                      ..+......++..|++..|+++....+++.|-++..+..++.||...|+...|+..++.+-++..++.+.+|.++.+++.
T Consensus       156 ~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~  235 (504)
T KOG0624|consen  156 WVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT  235 (504)
T ss_pred             HHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHh
Confidence            34556667778889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCCcccCCC--
Q 014212           95 MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDV--  172 (429)
Q Consensus        95 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~--  172 (429)
                      .|+.+.++...+.+++++|++...+.....+....+.  .+.+....+...+.++.....++++.+|.-...+++.-.  
T Consensus       236 vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~--les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~  313 (504)
T KOG0624|consen  236 VGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKS--LESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVL  313 (504)
T ss_pred             hhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHH--HHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeehee
Confidence            9999999999999999999998766555554444333  333444444555566666666888888775544444321  


Q ss_pred             ----CCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHh
Q 014212          173 ----ITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLR  208 (429)
Q Consensus       173 ----l~~~~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~  208 (429)
                          -..+.+.+.+........+.+.++..+|+.+...+-
T Consensus       314 c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~  353 (504)
T KOG0624|consen  314 CTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLG  353 (504)
T ss_pred             eecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence                112234444455555555555556666666555443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=1.8e-10  Score=111.08  Aligned_cols=197  Identities=17%  Similarity=0.158  Sum_probs=146.1

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   87 (429)
                      ...|+.+-.|+..|..|+..|++.+|.++|.++..++|....+|...|..+...++.++|+.+|.+|-++-|..-...+.
T Consensus       306 ~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY  385 (611)
T KOG1173|consen  306 DLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY  385 (611)
T ss_pred             HhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH
Confidence            45788899999999999999999999999999999999999999999999999999999999999999998888888888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc-------------------------
Q 014212           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE-------------------------  142 (429)
Q Consensus        88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~-------------------------  142 (429)
                      +|.=|..+++++-|..+|.+|+.+.|++|-....+|.+....+.  |.+|..+++                         
T Consensus       386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~--y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH  463 (611)
T KOG1173|consen  386 LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEE--YPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGH  463 (611)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhh--hHHHHHHHHHHHHHhhhccccccchhHHHHhHHH
Confidence            99999999999999999999999999888777777766654443  444443332                         


Q ss_pred             ----cccccccccccccccccCCCCCCCcccCCC--CCHHHHHHHHHHhhcccCCcHH--HHHHHHHHHHHH
Q 014212          143 ----SERHSVADSIDYQSIEVEPQYSGARIEGDV--ITLDFVKKMMDDFKNQKCLHKR--YAFQIVLQTREM  206 (429)
Q Consensus       143 ----~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~--l~~~~l~~li~~l~~~~~l~~~--~~~~ll~~a~~~  206 (429)
                          .+.+.+|...+++++.+.|.........+.  ..++.++.+++.+.+...+.+.  .+.+++..+.+.
T Consensus       464 ~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  464 AYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             HHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence                123445555555777777766555433322  2344566666666655544432  244444444443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.07  E-value=5.1e-10  Score=104.87  Aligned_cols=130  Identities=24%  Similarity=0.340  Sum_probs=103.2

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELN--SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   88 (429)
                      ..++..+......+...++++++...++++.+..  +.++..|..+|.++.+.|+.++|+.+++++++++|+++.+...+
T Consensus       107 ~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l  186 (280)
T PF13429_consen  107 DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNAL  186 (280)
T ss_dssp             -----------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred             ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            3456667778888999999999999999987655  67889999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        89 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      +.++...|+.++|.+.+....+..|+++..+..++.++..+|+  .++|+..++
T Consensus       187 ~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~--~~~Al~~~~  238 (280)
T PF13429_consen  187 AWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR--YEEALEYLE  238 (280)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT---HHHHHHHHH
T ss_pred             HHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc--ccccccccc
Confidence            9999999999999999999999889999999999999999998  788888887

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.07  E-value=2.5e-09  Score=110.60  Aligned_cols=111  Identities=11%  Similarity=0.006  Sum_probs=105.6

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   87 (429)
                      +-.|....+...+|.++.+.+++++|+..+++++..+|+++.+++.+|.++.++|++++|+..|++++..+|+++.++..
T Consensus       114 ~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~  193 (694)
T PRK15179        114 QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVG  193 (694)
T ss_pred             hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 014212           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA  118 (429)
Q Consensus        88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~  118 (429)
                      +|.++...|+.++|...|++|++...+-...
T Consensus       194 ~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~  224 (694)
T PRK15179        194 WAQSLTRRGALWRARDVLQAGLDAIGDGARK  224 (694)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence            9999999999999999999999987665544

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=4e-10  Score=104.84  Aligned_cols=133  Identities=24%  Similarity=0.327  Sum_probs=122.7

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA------------VYYANRAFAHTKLEEYGSAIQDASKAI   75 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~~lg~~~~~~g~~~~A~~~~~~al   75 (429)
                      ..++.++++++..|.+++-..+.+.|+..|+++++++|+..            ..+...|.-.++.|++..|.++|..+|
T Consensus       197 kld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal  276 (486)
T KOG0550|consen  197 KLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEAL  276 (486)
T ss_pred             hcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhh
Confidence            34778899999999999999999999999999999999853            457778999999999999999999999


Q ss_pred             HhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           76 EIDPRY----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        76 ~~~p~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      .++|++    +..|.++|.+...+|+..+|+..++.|++++|....++...+.|+..+++  |++|...++
T Consensus       277 ~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~--~e~AV~d~~  345 (486)
T KOG0550|consen  277 NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEK--WEEAVEDYE  345 (486)
T ss_pred             cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence            999975    56799999999999999999999999999999999999999999999998  888888877

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.05  E-value=2.7e-09  Score=113.51  Aligned_cols=133  Identities=16%  Similarity=0.138  Sum_probs=121.9

Q ss_pred             CcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 014212            7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY   86 (429)
Q Consensus         7 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   86 (429)
                      ....|-++........++.-.|++++|++.+.++...+|..+.++..+|.++...|++++|+..|+++++++|.++.++.
T Consensus         8 ~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~   87 (765)
T PRK10049          8 ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQR   87 (765)
T ss_pred             hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            44566667777788889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        87 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      .+|.++...|++++|+..++++++..|+++. +..++.++...++  +++|+..++
T Consensus        88 ~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~--~~~Al~~l~  140 (765)
T PRK10049         88 GLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGR--HWDELRAMT  140 (765)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCC--HHHHHHHHH
Confidence            9999999999999999999999999999999 9999999988887  566666655

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.03  E-value=6e-09  Score=94.84  Aligned_cols=152  Identities=18%  Similarity=0.187  Sum_probs=127.4

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh---HHH
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYY---ANRAFAHTKLEEYGSAIQDASKAIEIDPRYP---KGY   85 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~   85 (429)
                      .++..++..|..++..|+|++|++.|++++...|..+.+.   +.+|.++++.+++++|+..+++.++.+|+++   .++
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            4677799999999999999999999999999999986554   8999999999999999999999999999864   578


Q ss_pred             HHHHHHHHHcCC------------------HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHhHHHHHhhcCCccc
Q 014212           86 YRRGAAYLAMGK------------------FKEALKDFQQVKKLSPND---PDAAQKVKECEKAVKKLKFEEAIAVPESE  144 (429)
Q Consensus        86 ~~la~~~~~~g~------------------~~eA~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~~~a~~~~~~~  144 (429)
                      +.+|.++..+++                  ..+|+..|++.++..|+.   +++...+..+...+.+.++.-|.-++..+
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~  189 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRG  189 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999988755541                  357889999999999987   46777888888888888887777778877


Q ss_pred             cccccccccccccccCCCC
Q 014212          145 RHSVADSIDYQSIEVEPQY  163 (429)
Q Consensus       145 ~~~~a~~~~~~~l~~~~~~  163 (429)
                      .+..|......+++-.|+.
T Consensus       190 ~y~AA~~r~~~v~~~Yp~t  208 (243)
T PRK10866        190 AYVAVVNRVEQMLRDYPDT  208 (243)
T ss_pred             chHHHHHHHHHHHHHCCCC
Confidence            7777777677777655543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.02  E-value=3.3e-09  Score=111.73  Aligned_cols=156  Identities=12%  Similarity=0.049  Sum_probs=120.8

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   88 (429)
                      -.|+.+...+..|...+++|+++.|+..|+++++.+|.++.+...+..++...|+.++|+..+++++.-.|........+
T Consensus        29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llal  108 (822)
T PRK14574         29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASA  108 (822)
T ss_pred             cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHH
Confidence            35677889999999999999999999999999999999965545888888889999999999999993333344444444


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCcc---------------------cccc
Q 014212           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPES---------------------ERHS  147 (429)
Q Consensus        89 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~---------------------~~~~  147 (429)
                      |.++..+|++++|++.|+++++.+|+++.++..++.++...++  .++|+...++                     ....
T Consensus       109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q--~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~  186 (822)
T PRK14574        109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGR--GGVVLKQATELAERDPTVQNYMTLSYLNRATDRNY  186 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC--HHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHH
Confidence            7799999999999999999999999999999888777777666  4454443221                     2222


Q ss_pred             ccccccccccccCCCCCCC
Q 014212          148 VADSIDYQSIEVEPQYSGA  166 (429)
Q Consensus       148 ~a~~~~~~~l~~~~~~~~~  166 (429)
                      +|...+.++++.+|.....
T Consensus       187 ~AL~~~ekll~~~P~n~e~  205 (822)
T PRK14574        187 DALQASSEAVRLAPTSEEV  205 (822)
T ss_pred             HHHHHHHHHHHhCCCCHHH
Confidence            3666666777777776544

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.01  E-value=7e-09  Score=92.11  Aligned_cols=152  Identities=23%  Similarity=0.258  Sum_probs=124.7

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh---HHH
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP---KGY   85 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~   85 (429)
                      .++..++..|..++..|+|.+|+..|++++...|..   +.+.+.+|.+++..|++.+|+..+++.+...|+++   .++
T Consensus         3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~   82 (203)
T PF13525_consen    3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL   82 (203)
T ss_dssp             --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence            357889999999999999999999999999998875   67899999999999999999999999999999865   588


Q ss_pred             HHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHhHHHHHhhcCCcccccccccc
Q 014212           86 YRRGAAYLAMG-----------KFKEALKDFQQVKKLSPNDP---DAAQKVKECEKAVKKLKFEEAIAVPESERHSVADS  151 (429)
Q Consensus        86 ~~la~~~~~~g-----------~~~eA~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~  151 (429)
                      +.+|.++..+.           ...+|+..|+..+...|+++   ++...+..+...+...++.-|.-++..+.+..|..
T Consensus        83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~  162 (203)
T PF13525_consen   83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAII  162 (203)
T ss_dssp             HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred             HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence            99999877653           34589999999999999885   56777888888888888888888888888888888


Q ss_pred             ccccccccCCCC
Q 014212          152 IDYQSIEVEPQY  163 (429)
Q Consensus       152 ~~~~~l~~~~~~  163 (429)
                      .+..+++-.|+.
T Consensus       163 r~~~v~~~yp~t  174 (203)
T PF13525_consen  163 RFQYVIENYPDT  174 (203)
T ss_dssp             HHHHHHHHSTTS
T ss_pred             HHHHHHHHCCCC
Confidence            888888776654

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.00  E-value=2.9e-09  Score=106.19  Aligned_cols=126  Identities=16%  Similarity=0.080  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 014212           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL   93 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   93 (429)
                      ...|...|..+...+..++|.-++.++-+++|..+..|+..|.++...|++++|.+.|..|+.++|+++.....+|.++.
T Consensus       650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll  729 (799)
T KOG4162|consen  650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL  729 (799)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            34556666667777777777777788877888888888888888888888888888888888888888888888888888


Q ss_pred             HcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCC
Q 014212           94 AMGKFKEALK--DFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVP  141 (429)
Q Consensus        94 ~~g~~~eA~~--~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~  141 (429)
                      +.|+-.-|..  .+..+++++|.++++|+.+|.+....|+  .+.|.+.+
T Consensus       730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd--~~~Aaecf  777 (799)
T KOG4162|consen  730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD--SKQAAECF  777 (799)
T ss_pred             HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc--hHHHHHHH
Confidence            8877666666  7778888888888888888888877777  44444443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=1e-08  Score=92.88  Aligned_cols=112  Identities=15%  Similarity=0.062  Sum_probs=102.1

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC---CHHHHHHHH
Q 014212           29 KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMG---KFKEALKDF  105 (429)
Q Consensus        29 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~eA~~~~  105 (429)
                      +.++.+.-++.-++.+|+|+.-|..||.+|+.+|++..|+..|.+|+++.|++++.+..+|.+++.+.   ...+|...+
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll  216 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL  216 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            45667778888999999999999999999999999999999999999999999999999998877654   347899999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212          106 QQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus       106 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      ++++.++|++..+.+.++..+...++  +.+|+..++
T Consensus       217 ~~al~~D~~~iral~lLA~~afe~g~--~~~A~~~Wq  251 (287)
T COG4235         217 RQALALDPANIRALSLLAFAAFEQGD--YAEAAAAWQ  251 (287)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHccc--HHHHHHHHH
Confidence            99999999999999999999988888  888888877

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.96  E-value=1.2e-08  Score=100.87  Aligned_cols=187  Identities=17%  Similarity=0.218  Sum_probs=137.7

Q ss_pred             CCCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 014212            5 ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE   76 (429)
Q Consensus         5 ~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   76 (429)
                      +.....|....+...+|..|..+|+|++|+..+++|++.        .|.-......+|.+|..++++.+|+..|++|+.
T Consensus       190 ~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~  269 (508)
T KOG1840|consen  190 GLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT  269 (508)
T ss_pred             hcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            345678888899999999999999999999999999998        566666677799999999999999999999997


Q ss_pred             hC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH---HHHHHHHHHHHHHhHHHHHhhcC
Q 014212           77 ID--------PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS-----PNDPD---AAQKVKECEKAVKKLKFEEAIAV  140 (429)
Q Consensus        77 ~~--------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-----p~~~~---~~~~l~~~~~~~~~~~~~~a~~~  140 (429)
                      +.        |..+.++.+||.+|...|++++|..++++|+++.     ...++   .+..++.++..+++  +++|..+
T Consensus       270 i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~--~Eea~~l  347 (508)
T KOG1840|consen  270 IREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNE--YEEAKKL  347 (508)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcc--hhHHHHH
Confidence            63        4456789999999999999999999999999874     23333   34455555544444  6666666


Q ss_pred             CccccccccccccccccccCCCCCCCcccCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhC
Q 014212          141 PESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRAL  210 (429)
Q Consensus       141 ~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~  210 (429)
                      +.            +++++.....+...   .........+.+.+...++..+  +..+..++..+...-
T Consensus       348 ~q------------~al~i~~~~~g~~~---~~~a~~~~nl~~l~~~~gk~~e--a~~~~k~ai~~~~~~  400 (508)
T KOG1840|consen  348 LQ------------KALKIYLDAPGEDN---VNLAKIYANLAELYLKMGKYKE--AEELYKKAIQILREL  400 (508)
T ss_pred             HH------------HHHHHHHhhccccc---hHHHHHHHHHHHHHHHhcchhH--HHHHHHHHHHHHHhc
Confidence            65            55544332111111   1233445566666777776655  777777777777643

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.96  E-value=4.1e-09  Score=101.70  Aligned_cols=101  Identities=22%  Similarity=0.321  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014212           51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK  130 (429)
Q Consensus        51 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~  130 (429)
                      +...|..++..|+|++|+..|++|++++|+++.+|+.+|.+|..+|++++|+..++++++++|+++.+++.+|.++..++
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hHHHHHhhcCCccccccccccccccccccCCCCCC
Q 014212          131 KLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSG  165 (429)
Q Consensus       131 ~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~  165 (429)
                      +  +++|+..++            ++++++|....
T Consensus        85 ~--~~eA~~~~~------------~al~l~P~~~~  105 (356)
T PLN03088         85 E--YQTAKAALE------------KGASLAPGDSR  105 (356)
T ss_pred             C--HHHHHHHHH------------HHHHhCCCCHH
Confidence            8  788888777            88888887643

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.95  E-value=2.1e-09  Score=106.69  Aligned_cols=128  Identities=19%  Similarity=0.247  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   92 (429)
                      .+.+.+.+|...+.+++|++|.+.++..++++|-....|+++|.|..++++++.|.++|.+++.++|++.++|.+++.+|
T Consensus       484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ay  563 (777)
T KOG1128|consen  484 SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAY  563 (777)
T ss_pred             hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHH
Confidence            34556666777777899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        93 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      ...++-.+|...+++|++.+-+++..|.+...+....+.  ++.|+..+.
T Consensus       564 i~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge--~eda~~A~~  611 (777)
T KOG1128|consen  564 IRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGE--FEDAIKAYH  611 (777)
T ss_pred             HHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhccc--HHHHHHHHH
Confidence            999999999999999999999999999888888877777  777777766

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.92  E-value=3.2e-09  Score=91.45  Aligned_cols=110  Identities=19%  Similarity=0.238  Sum_probs=93.9

Q ss_pred             HHHHHhcCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcC
Q 014212           22 NEAFRAKKYSQAIDLYSQAIELNSQN--AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR---YPKGYYRRGAAYLAMG   96 (429)
Q Consensus        22 ~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g   96 (429)
                      +.++-.+.|..+...+.+.++..+.+  ...++++|.++..+|++++|+..|++++.+.|+   .+.+++++|.++..+|
T Consensus         7 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g   86 (168)
T CHL00033          7 NDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG   86 (168)
T ss_pred             cccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC
Confidence            34455566777778887776666665  677899999999999999999999999998776   3458999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212           97 KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (429)
Q Consensus        97 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  131 (429)
                      ++++|+..|++++++.|.+...+..++.++..+++
T Consensus        87 ~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~  121 (168)
T CHL00033         87 EHTKALEYYFQALERNPFLPQALNNMAVICHYRGE  121 (168)
T ss_pred             CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhH
Confidence            99999999999999999999999999999985553

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.91  E-value=1.6e-08  Score=105.69  Aligned_cols=132  Identities=14%  Similarity=0.113  Sum_probs=118.5

Q ss_pred             CCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh---
Q 014212            6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP---   82 (429)
Q Consensus         6 ~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---   82 (429)
                      ..+-+|....++..+...+...+++++|++..+.+++..|+...+|+.+|.++++.+++.+|...  +++..-+.+.   
T Consensus        23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~  100 (906)
T PRK14720         23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWA  100 (906)
T ss_pred             cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchh
Confidence            34558899999999999999999999999999999999999999999999999999998877665  6666655555   


Q ss_pred             ----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           83 ----------------KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        83 ----------------~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                                      .+++.+|.||.++|+.++|...|+++++++|+++.++.++|..+... +  +++|..++.
T Consensus       101 ~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-d--L~KA~~m~~  173 (906)
T PRK14720        101 IVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-D--KEKAITYLK  173 (906)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-h--HHHHHHHHH
Confidence                            89999999999999999999999999999999999999999999887 4  777777665

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=4.1e-09  Score=91.48  Aligned_cols=102  Identities=37%  Similarity=0.559  Sum_probs=96.9

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 014212           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA   90 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~   90 (429)
                      ...+..+...|+.++...+|..|+..|.+|+.++|..+..|.+.+.|++++++++.+...+++|++++|+...+++.+|.
T Consensus         7 s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~   86 (284)
T KOG4642|consen    7 SESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQ   86 (284)
T ss_pred             chHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHH
Confidence            34567788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhC
Q 014212           91 AYLAMGKFKEALKDFQQVKKLS  112 (429)
Q Consensus        91 ~~~~~g~~~eA~~~~~~al~~~  112 (429)
                      +......|++|+..+++|..+.
T Consensus        87 ~~l~s~~~~eaI~~Lqra~sl~  108 (284)
T KOG4642|consen   87 WLLQSKGYDEAIKVLQRAYSLL  108 (284)
T ss_pred             HHHhhccccHHHHHHHHHHHHH
Confidence            9999999999999999997764

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.91  E-value=2.8e-08  Score=99.97  Aligned_cols=138  Identities=14%  Similarity=0.078  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--------hCHHHHHHHHHHHHHh--CC
Q 014212           13 RAEELKALANEAFRAKK---YSQAIDLYSQAIELNSQNAVYYANRAFAHTKL--------EEYGSAIQDASKAIEI--DP   79 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~--~p   79 (429)
                      .+..++..|..++..++   +.+|+.+|++|++++|+++.++-.++.++...        .+..+|.+..++++.+  +|
T Consensus       338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~  417 (517)
T PRK10153        338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN  417 (517)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence            56667888888887655   88999999999999999999999998888664        2355677777777764  77


Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCcccccccccccccccccc
Q 014212           80 RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEV  159 (429)
Q Consensus        80 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~  159 (429)
                      ..+.+|.-+|..+...|++++|...+++|++++| +..++..+|.++...|+  .++|+..++            +++.+
T Consensus       418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~--~~eA~~~~~------------~A~~L  482 (517)
T PRK10153        418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGD--NRLAADAYS------------TAFNL  482 (517)
T ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCC--HHHHHHHHH------------HHHhc
Confidence            7889999999999999999999999999999999 47899999999999998  788888877            88888


Q ss_pred             CCCCCC
Q 014212          160 EPQYSG  165 (429)
Q Consensus       160 ~~~~~~  165 (429)
                      +|.+..
T Consensus       483 ~P~~pt  488 (517)
T PRK10153        483 RPGENT  488 (517)
T ss_pred             CCCCch
Confidence            887654

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.91  E-value=1e-08  Score=101.49  Aligned_cols=213  Identities=18%  Similarity=0.212  Sum_probs=150.7

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID--   78 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--   78 (429)
                      .+|.-+..+..+|..|..+++|.+|+..|++|+.+        +|..+.++.+||.+|...|++++|..++++|+++.  
T Consensus       236 ~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~  315 (508)
T KOG1840|consen  236 KHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK  315 (508)
T ss_pred             cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence            45566666778999999999999999999999985        45567889999999999999999999999999874  


Q ss_pred             ------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHHHhHHHHHhhcCCccc
Q 014212           79 ------PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS-----PND---PDAAQKVKECEKAVKKLKFEEAIAVPESE  144 (429)
Q Consensus        79 ------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-----p~~---~~~~~~l~~~~~~~~~~~~~~a~~~~~~~  144 (429)
                            |+-+..+.+++.++..++++++|...+++++++.     +++   +..+.+++.++..+|+  +++|..+++  
T Consensus       316 ~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk--~~ea~~~~k--  391 (508)
T KOG1840|consen  316 LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGK--YKEAEELYK--  391 (508)
T ss_pred             hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcc--hhHHHHHHH--
Confidence                  3345678899999999999999999999999874     233   4567778888877776  566666655  


Q ss_pred             cccccccccccccccCCCCCCCcccCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhh----CCCeeeecCCC
Q 014212          145 RHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRA----LPSLVDIDIPD  220 (429)
Q Consensus       145 ~~~~a~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~----~p~~~~~~~~~  220 (429)
                                +++.......+......-.   .+..+.......+..  +.+..+..++..+++.    .|++...-   
T Consensus       392 ----------~ai~~~~~~~~~~~~~~~~---~l~~la~~~~~~k~~--~~a~~l~~~~~~i~~~~g~~~~~~~~~~---  453 (508)
T KOG1840|consen  392 ----------KAIQILRELLGKKDYGVGK---PLNQLAEAYEELKKY--EEAEQLFEEAKDIMKLCGPDHPDVTYTY---  453 (508)
T ss_pred             ----------HHHHHHHhcccCcChhhhH---HHHHHHHHHHHhccc--chHHHHHHHHHHHHHHhCCCCCchHHHH---
Confidence                      7776654444432222112   233344444333333  3367778888777732    23332221   


Q ss_pred             CCceEEEccCCCCHHHHHHHHHHc
Q 014212          221 GKHFTVCGDVHGQFYDLLNIFELN  244 (429)
Q Consensus       221 ~~~~~v~GDihG~~~~l~~~l~~~  244 (429)
                       .++...-+--|++++..++...+
T Consensus       454 -~nL~~~Y~~~g~~e~a~~~~~~~  476 (508)
T KOG1840|consen  454 -LNLAALYRAQGNYEAAEELEEKV  476 (508)
T ss_pred             -HHHHHHHHHcccHHHHHHHHHHH
Confidence             13556667778888888776543

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.91  E-value=1.3e-07  Score=74.58  Aligned_cols=106  Identities=26%  Similarity=0.347  Sum_probs=94.8

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh----HHHH
Q 014212           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP----KGYY   86 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~   86 (429)
                      .+....+-..|..+...|+.+.|++.|.+++.+.|..+.+|.+++.++..+|+.++|++.+++|+++..+..    .++.
T Consensus        40 ~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~v  119 (175)
T KOG4555|consen   40 IKASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFV  119 (175)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHH
Confidence            344456777888999999999999999999999999999999999999999999999999999999975543    4789


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 014212           87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDP  116 (429)
Q Consensus        87 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~  116 (429)
                      ..|.+|..+|+.+.|...|+.|-++.....
T Consensus       120 QRg~lyRl~g~dd~AR~DFe~AA~LGS~FA  149 (175)
T KOG4555|consen  120 QRGLLYRLLGNDDAARADFEAAAQLGSKFA  149 (175)
T ss_pred             HHHHHHHHhCchHHHHHhHHHHHHhCCHHH
Confidence            999999999999999999999999876543

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.89  E-value=4.1e-08  Score=93.83  Aligned_cols=122  Identities=21%  Similarity=0.174  Sum_probs=111.9

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   87 (429)
                      ...|+++..+-..+.+++..++..+|.+.+++++.++|+.+..+.++|.++++.|++++|+..+++.+..+|+++..|..
T Consensus       334 ~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~  413 (484)
T COG4783         334 AAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDL  413 (484)
T ss_pred             HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHH
Confidence            35788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014212           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV  129 (429)
Q Consensus        88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~  129 (429)
                      ||.+|..+|+..+|...+...+.+......+...+.....+.
T Consensus       414 LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~  455 (484)
T COG4783         414 LAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV  455 (484)
T ss_pred             HHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999999999888777766665554433

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.89  E-value=1.8e-08  Score=76.37  Aligned_cols=91  Identities=32%  Similarity=0.502  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014212           50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV  129 (429)
Q Consensus        50 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~  129 (429)
                      +++.+|.++...|++++|+..++++++..|.+..+++.+|.++...+++++|+..+++++...|.+..++..++.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HhHHHHHhhcCCc
Q 014212          130 KKLKFEEAIAVPE  142 (429)
Q Consensus       130 ~~~~~~~a~~~~~  142 (429)
                      ++  +++|...+.
T Consensus        82 ~~--~~~a~~~~~   92 (100)
T cd00189          82 GK--YEEALEAYE   92 (100)
T ss_pred             Hh--HHHHHHHHH
Confidence            87  666666554

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=2.1e-08  Score=87.37  Aligned_cols=108  Identities=26%  Similarity=0.310  Sum_probs=97.3

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCC----------CHHHHHHHHHHHHHhhCHHHHHHHHH
Q 014212           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQ----------NAVYYANRAFAHTKLEEYGSAIQDAS   72 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~----------~~~~~~~lg~~~~~~g~~~~A~~~~~   72 (429)
                      -....++...|+-+++.|+|.+|...|+.|+..        .|.          ....+.|++.|+...|+|-++++.+.
T Consensus       175 mkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~s  254 (329)
T KOG0545|consen  175 MKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCS  254 (329)
T ss_pred             hhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHH
Confidence            345678999999999999999999999999742        343          34678999999999999999999999


Q ss_pred             HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 014212           73 KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA  118 (429)
Q Consensus        73 ~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~  118 (429)
                      ..+..+|.|..|||..|.++....+.++|.+.|.++++++|.-..+
T Consensus       255 eiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv  300 (329)
T KOG0545|consen  255 EILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV  300 (329)
T ss_pred             HHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence            9999999999999999999999999999999999999999987654

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.88  E-value=5.9e-08  Score=77.65  Aligned_cols=96  Identities=22%  Similarity=0.137  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC---ChHHHHHH
Q 014212           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR---YPKGYYRR   88 (429)
Q Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l   88 (429)
                      .++++.|..+...|+.++|+..|+++++...+.   ..++..+|..+..+|++++|+..+++++...|+   +......+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            578999999999999999999999999976554   568899999999999999999999999999888   78888999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHH
Q 014212           89 GAAYLAMGKFKEALKDFQQVKK  110 (429)
Q Consensus        89 a~~~~~~g~~~eA~~~~~~al~  110 (429)
                      +.++..+|+.++|+..+-.++.
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999988876

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.88  E-value=8e-08  Score=78.15  Aligned_cols=107  Identities=28%  Similarity=0.389  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh---HHHH
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP---KGYY   86 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~   86 (429)
                      .+..++..|...++.|+|++|++.|+.+....|..   ..+...+|.+|++.+++++|+..+++-++++|.++   .+++
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            46789999999999999999999999999987764   67889999999999999999999999999999875   5799


Q ss_pred             HHHHHHHHcCC---------------HHHHHHHHHHHHHhCCCCHHHH
Q 014212           87 RRGAAYLAMGK---------------FKEALKDFQQVKKLSPNDPDAA  119 (429)
Q Consensus        87 ~la~~~~~~g~---------------~~eA~~~~~~al~~~p~~~~~~  119 (429)
                      ..|.++..+..               ..+|...|++.++..|++.-+-
T Consensus        89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~  136 (142)
T PF13512_consen   89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA  136 (142)
T ss_pred             HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence            99999999887               7899999999999999987543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.87  E-value=1.5e-08  Score=74.06  Aligned_cols=67  Identities=31%  Similarity=0.593  Sum_probs=41.6

Q ss_pred             HHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014212           56 FAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKV  122 (429)
Q Consensus        56 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l  122 (429)
                      .+|.+.+++++|++++++++.++|+++..|+.+|.++..+|++.+|++.|+++++..|+++.+....
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~   69 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR   69 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence            4556666666666666666666666666666666666666666666666666666666665554433

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.87  E-value=1.8e-09  Score=97.69  Aligned_cols=117  Identities=12%  Similarity=0.191  Sum_probs=86.1

Q ss_pred             HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHcCCHHH
Q 014212           24 AFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP---RYPKGYYRRGAAYLAMGKFKE  100 (429)
Q Consensus        24 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~e  100 (429)
                      |+-.++.+-|+.+|++.+++.-.++..+.|+|.|++-.++++-++.+|++|+....   .-++.||++|.+....|++.-
T Consensus       334 yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nl  413 (478)
T KOG1129|consen  334 YFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNL  413 (478)
T ss_pred             cccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHH
Confidence            33444444444444444444445567788888888888888888888888887643   246789999998888999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212          101 ALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus       101 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      |..+|+-|+..+|++.+++.+++.+..+.|+  ...|..++.
T Consensus       414 A~rcfrlaL~~d~~h~ealnNLavL~~r~G~--i~~Arsll~  453 (478)
T KOG1129|consen  414 AKRCFRLALTSDAQHGEALNNLAVLAARSGD--ILGARSLLN  453 (478)
T ss_pred             HHHHHHHHhccCcchHHHHHhHHHHHhhcCc--hHHHHHHHH
Confidence            9999999999999999999998888777666  555555554

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.87  E-value=3e-08  Score=89.87  Aligned_cols=140  Identities=16%  Similarity=0.182  Sum_probs=111.1

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-----hHHHH
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-----PKGYY   86 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~   86 (429)
                      ....++..+|..|+..|-++.|...|...++....-..++..+..+|....+|++|++..++...+.+..     +..|+
T Consensus       105 qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyC  184 (389)
T COG2956         105 QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYC  184 (389)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHH
Confidence            3455677777777777777777777777766555556778888888888888888888888888887753     45788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCC
Q 014212           87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSG  165 (429)
Q Consensus        87 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~  165 (429)
                      .||..+....+++.|+..+.+|++-+|++..+...+|.+....|+  +++|+..++            .+++-+|.|.+
T Consensus       185 ELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~--y~~AV~~~e------------~v~eQn~~yl~  249 (389)
T COG2956         185 ELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGD--YQKAVEALE------------RVLEQNPEYLS  249 (389)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccc--hHHHHHHHH------------HHHHhChHHHH
Confidence            888888888899999999999999999999998889888887777  788887777            67777777643

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.85  E-value=4.1e-08  Score=99.71  Aligned_cols=109  Identities=21%  Similarity=0.250  Sum_probs=106.0

Q ss_pred             CCCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 014212            5 ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG   84 (429)
Q Consensus         5 ~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~   84 (429)
                      +...++|..+.+++.+|.+|-++|+.++|+...-.|..++|.+...|..++....++|.+++|.-+|.+|++++|.+.+.
T Consensus       164 EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~  243 (895)
T KOG2076|consen  164 EVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWEL  243 (895)
T ss_pred             HHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 014212           85 YYRRGAAYLAMGKFKEALKDFQQVKKLSP  113 (429)
Q Consensus        85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p  113 (429)
                      .+..+.+|.++|+...|...|.+++.+.|
T Consensus       244 ~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  244 IYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            99999999999999999999999999999

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.85  E-value=3.1e-08  Score=99.02  Aligned_cols=112  Identities=18%  Similarity=0.151  Sum_probs=106.0

Q ss_pred             CCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHH--HHHHHHHhCCCChH
Q 014212            6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQ--DASKAIEIDPRYPK   83 (429)
Q Consensus         6 ~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~--~~~~al~~~p~~~~   83 (429)
                      +....|..+..++..|..+..+|++++|.+.|..|+.++|+++.....+|.++.+.|+..-|..  .+..+++++|.+++
T Consensus       676 a~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~e  755 (799)
T KOG4162|consen  676 ASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHE  755 (799)
T ss_pred             HHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHH
Confidence            3456788889999999999999999999999999999999999999999999999999888888  99999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014212           84 GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD  117 (429)
Q Consensus        84 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~  117 (429)
                      +|+.+|.++.++|+.++|.++|+-|+++++.+|.
T Consensus       756 aW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  756 AWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            9999999999999999999999999999998874

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.85  E-value=1.1e-08  Score=88.50  Aligned_cols=87  Identities=20%  Similarity=0.344  Sum_probs=79.5

Q ss_pred             CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014212           45 SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK  121 (429)
Q Consensus        45 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~  121 (429)
                      +..+.+++++|..+...|++++|+.+|++++...|+.   +.+++.+|.++..+|++++|+..++++++..|++..++..
T Consensus        32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  111 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN  111 (172)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence            3467789999999999999999999999999987763   4689999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 014212          122 VKECEKAVKK  131 (429)
Q Consensus       122 l~~~~~~~~~  131 (429)
                      ++.++..+++
T Consensus       112 lg~~~~~~g~  121 (172)
T PRK02603        112 IAVIYHKRGE  121 (172)
T ss_pred             HHHHHHHcCC
Confidence            9999888776

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.84  E-value=2e-08  Score=73.40  Aligned_cols=71  Identities=24%  Similarity=0.449  Sum_probs=65.7

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 014212           20 LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA   90 (429)
Q Consensus        20 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~   90 (429)
                      +...|+.+++|++|++.++++++.+|+++..|..+|.++..+|++++|++.++++++..|+++.+....+.
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            35789999999999999999999999999999999999999999999999999999999999887765543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.84  E-value=3.8e-08  Score=100.64  Aligned_cols=123  Identities=14%  Similarity=0.133  Sum_probs=100.8

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   87 (429)
                      ..+..++.+|.+|..|..+|+|++|..+|.++++.+|++ ...++.+|+.+...|+++.|..+|++++...|++.+...-
T Consensus       302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~i  381 (1018)
T KOG2002|consen  302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKI  381 (1018)
T ss_pred             hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHH
Confidence            445667788888888888888888888888888888887 7778888888888888888888888888888888888888


Q ss_pred             HHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212           88 RGAAYLAMG----KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (429)
Q Consensus        88 la~~~~~~g----~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  131 (429)
                      ||.+|...+    ..++|..+..++++..|.+.+++..++.++.....
T Consensus       382 LG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~  429 (1018)
T KOG2002|consen  382 LGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDP  429 (1018)
T ss_pred             HHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcCh
Confidence            888888775    56788888888888888888888888877755443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.84  E-value=9.9e-09  Score=73.87  Aligned_cols=63  Identities=27%  Similarity=0.468  Sum_probs=34.5

Q ss_pred             HhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014212           60 KLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKV  122 (429)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l  122 (429)
                      +.|++++|+..|++++..+|++..+++.+|.+|..+|++++|...+++++..+|+++.++..+
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~   65 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL   65 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            445555555555555555555555555555555555555555555555555555555444443

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.84  E-value=9.2e-09  Score=74.03  Aligned_cols=68  Identities=21%  Similarity=0.216  Sum_probs=62.3

Q ss_pred             HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 014212           24 AFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA   91 (429)
Q Consensus        24 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~   91 (429)
                      ++..|+|++|++.|+++++.+|++..+++.+|.|++..|++++|.+.+++++..+|+++..+..++.+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            46789999999999999999999999999999999999999999999999999999988887776653

...

>PRK11906 transcriptional regulator; Provisional

Probab=98.83  E-value=4.9e-08  Score=93.81  Aligned_cols=137  Identities=17%  Similarity=0.079  Sum_probs=118.6

Q ss_pred             HHHHHHHHHHHhcC---HHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHh---------hCHHHHHHHHHHHHHhCCC
Q 014212           16 ELKALANEAFRAKK---YSQAIDLYSQAI---ELNSQNAVYYANRAFAHTKL---------EEYGSAIQDASKAIEIDPR   80 (429)
Q Consensus        16 ~~~~~a~~~~~~g~---~~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~p~   80 (429)
                      .++..|...+.++.   .+.|+..|.+|+   +++|+.+.+|..++.|++..         .+..+|.+..++|++++|.
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~  336 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV  336 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence            44777877776654   467999999999   99999999999999998765         2456889999999999999


Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccC
Q 014212           81 YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVE  160 (429)
Q Consensus        81 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~  160 (429)
                      ++.++..+|.++...++++.|...|++|+.++|+.+.+++..+.+....|+  .++|....+            ++++++
T Consensus       337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~--~~~a~~~i~------------~alrLs  402 (458)
T PRK11906        337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK--IEEARICID------------KSLQLE  402 (458)
T ss_pred             CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC--HHHHHHHHH------------HHhccC
Confidence            999999999999999999999999999999999999999999999988887  677777777            777777


Q ss_pred             CCCCCC
Q 014212          161 PQYSGA  166 (429)
Q Consensus       161 ~~~~~~  166 (429)
                      |.-.++
T Consensus       403 P~~~~~  408 (458)
T PRK11906        403 PRRRKA  408 (458)
T ss_pred             chhhHH
Confidence            765444

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.83  E-value=3.8e-08  Score=89.29  Aligned_cols=122  Identities=12%  Similarity=0.199  Sum_probs=109.8

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA   91 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~   91 (429)
                      +.++.+..++.+|.+..+.+.|+..|.+.++..|.+...+...+.++..++++++|++.|+.+++.+|.+.++...+|.-
T Consensus       254 ~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~  333 (478)
T KOG1129|consen  254 PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVG  333 (478)
T ss_pred             CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeec
Confidence            44566777888888888888888888888888999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHH
Q 014212           92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK  133 (429)
Q Consensus        92 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  133 (429)
                      |+--++.+-|+.+|++.+++.-.+++...+++.|...-++.+
T Consensus       334 yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D  375 (478)
T KOG1129|consen  334 YFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQID  375 (478)
T ss_pred             cccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchh
Confidence            999999999999999999999999999999999998888743

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.81  E-value=1.7e-07  Score=84.03  Aligned_cols=108  Identities=19%  Similarity=0.204  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHH
Q 014212           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRR   88 (429)
Q Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l   88 (429)
                      .-.|+.|..+++.|+|..|...|..-++..|++   +.+++.||.+++.+|+|+.|...|..+++..|+.   +++++.+
T Consensus       142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl  221 (262)
T COG1729         142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL  221 (262)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            449999999999999999999999999999885   7889999999999999999999999999998875   5789999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014212           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKV  122 (429)
Q Consensus        89 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l  122 (429)
                      |.+...+|+.++|...|+++++..|+.+.+....
T Consensus       222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak  255 (262)
T COG1729         222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAK  255 (262)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            9999999999999999999999999998876544

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.81  E-value=1.5e-07  Score=78.86  Aligned_cols=129  Identities=23%  Similarity=0.164  Sum_probs=107.1

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHH
Q 014212           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKG   84 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~   84 (429)
                      ...+...+..+...+..++...+...+++.++..|+.   ..+.+.+|.+++..|++++|...|+.++...|+.   +.+
T Consensus         8 ~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a   87 (145)
T PF09976_consen    8 AEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLA   87 (145)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHH
Confidence            3456667777777788999999999999999999998   5678889999999999999999999999987654   457


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      .+++|.++..+|++++|+..++. +.-.+-.+.++..+|.++...|+  +++|+..|+
T Consensus        88 ~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~--~~~A~~~y~  142 (145)
T PF09976_consen   88 RLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGD--YDEARAAYQ  142 (145)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence            88999999999999999999966 33345556788889999988887  777777665

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.81  E-value=7.2e-08  Score=80.78  Aligned_cols=98  Identities=18%  Similarity=0.163  Sum_probs=85.0

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   87 (429)
                      +-...+.+.+|..++..|++++|+..|++++...|+.   ..+.+++|.+++..|++++|+..++.+ .-.+-.+.++..
T Consensus        45 ~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~  123 (145)
T PF09976_consen   45 PYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAEL  123 (145)
T ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHH
Confidence            3447788999999999999999999999999988665   457889999999999999999999663 333445678888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHH
Q 014212           88 RGAAYLAMGKFKEALKDFQQVK  109 (429)
Q Consensus        88 la~~~~~~g~~~eA~~~~~~al  109 (429)
                      +|.+|..+|++++|+..|++|+
T Consensus       124 ~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  124 LGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHCCCHHHHHHHHHHhC
Confidence            9999999999999999999885

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=4.8e-08  Score=88.87  Aligned_cols=112  Identities=31%  Similarity=0.493  Sum_probs=99.6

Q ss_pred             CcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh
Q 014212            7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ----NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP   82 (429)
Q Consensus         7 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~   82 (429)
                      +...-+.+..+...|+.|++.++|..|+..|.+.|+....    ++..|.|+|.|.+.+|+|..|++.+.+|+.++|++.
T Consensus        74 E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~  153 (390)
T KOG0551|consen   74 EGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL  153 (390)
T ss_pred             cCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Confidence            3444557888999999999999999999999999997544    467799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 014212           83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA  118 (429)
Q Consensus        83 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~  118 (429)
                      .++++=|.|+.++.++++|..+++..+..+-+...+
T Consensus       154 Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~  189 (390)
T KOG0551|consen  154 KAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKA  189 (390)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            999999999999999999999999998876554433

>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11

Probab=98.80  E-value=1.1e-08  Score=88.10  Aligned_cols=76  Identities=26%  Similarity=0.312  Sum_probs=56.8

Q ss_pred             ceEEEccCCCCHHHH---HHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHH--HHhhhhCCCeEEEecCCcccccch
Q 014212          223 HFTVCGDVHGQFYDL---LNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTL--FAFKCMCPSAIYLSRGNHESKSMN  297 (429)
Q Consensus       223 ~~~v~GDihG~~~~l---~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l--~~lk~~~p~~~~~lrGNhe~~~~~  297 (429)
                      ++.++||+|+.....   ...+.........+.+|++||++++|..+.+.....  .......+..+++++||||.....
T Consensus         2 ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD~~~~~   81 (200)
T PF00149_consen    2 RILVISDLHGGYDDDSDAFRKLDEIAAENKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNHDYYSGN   81 (200)
T ss_dssp             EEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTSEEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TTSSHHHH
T ss_pred             eEEEEcCCCCCCcchhHHHHHHHHHhccCCCCEEEeeccccccccccccchhhhccchhhhhccccccccccccccceec
Confidence            489999999999987   333333222334456999999999999998888765  555566788999999999988765


Q ss_pred             h
Q 014212          298 K  298 (429)
Q Consensus       298 ~  298 (429)
                      .
T Consensus        82 ~   82 (200)
T PF00149_consen   82 S   82 (200)
T ss_dssp             H
T ss_pred             c
Confidence            3

The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.80  E-value=4.8e-08  Score=78.46  Aligned_cols=93  Identities=31%  Similarity=0.395  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 014212           48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQK  121 (429)
Q Consensus        48 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~  121 (429)
                      +..++.+|..+...|++++|++.|++++..+|++   +.+++.+|.++...|++++|+..|++++...|++   +.++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            4578999999999999999999999999999876   5789999999999999999999999999999886   678889


Q ss_pred             HHHHHHHHHhHHHHHhhcCCc
Q 014212          122 VKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus       122 l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      ++.++...++  +++|...++
T Consensus        82 ~~~~~~~~~~--~~~A~~~~~  100 (119)
T TIGR02795        82 LGMSLQELGD--KEKAKATLQ  100 (119)
T ss_pred             HHHHHHHhCC--hHHHHHHHH
Confidence            9998887776  666666665

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.79  E-value=1.5e-07  Score=85.41  Aligned_cols=128  Identities=20%  Similarity=0.293  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   87 (429)
                      ...++..+..+|....+|++|++..++..++.+..     +..|..+|..+....+++.|+..+.+|++.+|+...+-..
T Consensus       140 a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~  219 (389)
T COG2956         140 AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASII  219 (389)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhh
Confidence            45688899999999999999999999999998875     5678899999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           88 RGAAYLAMGKFKEALKDFQQVKKLSPND-PDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        88 la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      +|.++...|+|+.|++.++++++.+|+. +++...+..+|..+|+  .+++.....
T Consensus       220 lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~--~~~~~~fL~  273 (389)
T COG2956         220 LGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK--PAEGLNFLR  273 (389)
T ss_pred             hhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC--HHHHHHHHH
Confidence            9999999999999999999999999987 5688899999999997  444444333

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.79  E-value=2.6e-07  Score=81.27  Aligned_cols=123  Identities=15%  Similarity=0.104  Sum_probs=110.5

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   87 (429)
                      +.+|.+.-.+...--+.-.+|+.-+|++.+.+-++.-+.|..+|..++.+|...|+|++|.-|++..+-+.|-++-.+-+
T Consensus       114 ~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~r  193 (289)
T KOG3060|consen  114 EDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQR  193 (289)
T ss_pred             ccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence            45688888888777888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014212           88 RGAAYLAMGK---FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK  130 (429)
Q Consensus        88 la~~~~~~g~---~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~  130 (429)
                      +|.+++-+|.   +.-|.++|.++++++|.+..+++.+-.+...+.
T Consensus       194 lae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la  239 (289)
T KOG3060|consen  194 LAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALA  239 (289)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHH
Confidence            9999998875   567999999999999988888887766655444

>PRK09453 phosphodiesterase; Provisional

Probab=98.78  E-value=3e-08  Score=86.53  Aligned_cols=68  Identities=24%  Similarity=0.285  Sum_probs=52.4

Q ss_pred             ceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCC--------cHHHHHHHHHhhhhCCCeEEEecCCcccc
Q 014212          223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSF--------SVEVILTLFAFKCMCPSAIYLSRGNHESK  294 (429)
Q Consensus       223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~--------s~e~~~~l~~lk~~~p~~~~~lrGNhe~~  294 (429)
                      ++.+++|+||++..+.++++..... ..+.++++||++|+|+.        +.+++..+..+    +..+++++||||..
T Consensus         2 ri~viSD~Hg~~~~~~~~l~~~~~~-~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~----~~~v~~V~GNhD~~   76 (182)
T PRK09453          2 KLMFASDTHGSLPATEKALELFAQS-GADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAY----ADKIIAVRGNCDSE   76 (182)
T ss_pred             eEEEEEeccCCHHHHHHHHHHHHhc-CCCEEEEcccccccCcCCCCccccCHHHHHHHHHhc----CCceEEEccCCcch
Confidence            4889999999999988888876332 34569999999999874        46677766544    24689999999975


Q ss_pred             c
Q 014212          295 S  295 (429)
Q Consensus       295 ~  295 (429)
                      .
T Consensus        77 ~   77 (182)
T PRK09453         77 V   77 (182)
T ss_pred             h
Confidence            4

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.78  E-value=3.2e-08  Score=94.94  Aligned_cols=71  Identities=25%  Similarity=0.281  Sum_probs=49.3

Q ss_pred             CcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 014212            7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVY---YANRAFAHTKLEEYGSAIQDASKAIEI   77 (429)
Q Consensus         7 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~~~~al~~   77 (429)
                      ...+|+.+.++.++|..|+..|+|++|+..|+++++++|++..+   |+++|.+|..+|++++|+.++++|+++
T Consensus        68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34566667777777777777777777777777777777776643   677777777777777777777777765

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.77  E-value=1.2e-07  Score=79.51  Aligned_cols=97  Identities=22%  Similarity=0.279  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC--
Q 014212           30 YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEY----------GSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGK--   97 (429)
Q Consensus        30 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--   97 (429)
                      |+.|.+.++.....+|.++..+++-|.++..+.++          ++|+.-|+.|+.++|+..++++++|.+|..++.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            68899999999999999999999999999887554          578888999999999999999999999998875  


Q ss_pred             ---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014212           98 ---------FKEALKDFQQVKKLSPNDPDAAQKVKECE  126 (429)
Q Consensus        98 ---------~~eA~~~~~~al~~~p~~~~~~~~l~~~~  126 (429)
                               |++|..+|++|...+|++......|..+.
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~  124 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA  124 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence                     68899999999999999987776665543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PRK11906 transcriptional regulator; Provisional

Probab=98.77  E-value=1.7e-07  Score=90.17  Aligned_cols=113  Identities=14%  Similarity=0.062  Sum_probs=103.1

Q ss_pred             cccHhHHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC
Q 014212            8 NSSVSRAEELKALANEAFRA---------KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID   78 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   78 (429)
                      ..+|..+.++..+|.+++..         .+-.+|.+..++|++++|.|+.++..+|.+....++++.|...|++|+.++
T Consensus       289 ~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~  368 (458)
T PRK11906        289 DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS  368 (458)
T ss_pred             cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC
Confidence            56788888998888888754         345679999999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014212           79 PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ  120 (429)
Q Consensus        79 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~  120 (429)
                      |+.+.+|+..|.+..-.|+.++|.+.+++|++++|.-..+-.
T Consensus       369 Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~  410 (458)
T PRK11906        369 TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVV  410 (458)
T ss_pred             CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHH
Confidence            999999999999999999999999999999999998765543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.76  E-value=7.2e-08  Score=101.77  Aligned_cols=96  Identities=17%  Similarity=0.094  Sum_probs=46.6

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Q 014212           19 ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKF   98 (429)
Q Consensus        19 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~   98 (429)
                      .++.++...|++++|+.++++++...|........+|.++..+|++++|++.|+++++.+|+++.++..++.++...++.
T Consensus        73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~  152 (822)
T PRK14574         73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRG  152 (822)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCH
Confidence            44444444455555555555555222222333333344555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHhCCC
Q 014212           99 KEALKDFQQVKKLSPN  114 (429)
Q Consensus        99 ~eA~~~~~~al~~~p~  114 (429)
                      ++|++.++++...+|+
T Consensus       153 ~eAl~~l~~l~~~dp~  168 (822)
T PRK14574        153 GVVLKQATELAERDPT  168 (822)
T ss_pred             HHHHHHHHHhcccCcc
Confidence            5555555555555554

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.76  E-value=1e-07  Score=92.41  Aligned_cols=129  Identities=17%  Similarity=0.200  Sum_probs=99.3

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHH----HhCCCChHHHH
Q 014212           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAI----EIDPRYPKGYY   86 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~~   86 (429)
                      .+..+.....|..+...|++++|...++++++.+|++..++.. +..+...|++..+.....+++    ..+|....++.
T Consensus        40 ~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  118 (355)
T cd05804          40 ATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLG  118 (355)
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHH
Confidence            3456667788999999999999999999999999999877665 555555555444444444444    44566666777


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        87 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      .+|.++..+|++++|...++++++++|+++.++..++.++...++  +++|+..++
T Consensus       119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~--~~eA~~~l~  172 (355)
T cd05804         119 MLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR--FKEGIAFME  172 (355)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            788888899999999999999999999988888888888877777  677777666

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG0639 ApaH Diadenosine tetraphosphatase and related serine/threonine protein phosphatases [Signal transduction mechanisms]

Probab=98.76  E-value=6.5e-09  Score=87.46  Aligned_cols=128  Identities=38%  Similarity=0.511  Sum_probs=100.1

Q ss_pred             chhhccchhhhhcccchH-HHHH---HHHHhccCcccceecC-eEEEEecCccCCCC-CCccccccccCCC--CCCCCCc
Q 014212          296 MNKIYGFEGEVRSKLSET-FVEL---FAEVFCCLPLAHVLNQ-KVFVVHGGLFSVDG-VKLSDIKTIDRFC--EPPEEGL  367 (429)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~lp~~~~~~~-~~~~vH~gi~~~~~-~~~~~i~~~~r~~--~~~~~~~  367 (429)
                      ++..+|+.+++..+++.. .|..   +.++|+.+|+.+++++ .++|.|||+ ++.. ..+++++.+.|..  .....+.
T Consensus         3 l~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~lp~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~g~   81 (155)
T COG0639           3 LTALYGFYDEKLRKYGEELEWLRAAGGLETFDSLPLAAVAEGGKLLCHHGGL-SPGLDRLLDIIEVLDRLRACEVPHAGH   81 (155)
T ss_pred             hhhhhchhHHhhhhcCCceeeeeccchhhHHHhhhHHHHhcCCceeeecCCC-CcchhhhHHHHHHHhhhhcccCCCccc
Confidence            445567766666666543 4555   9999999999999988 999999999 5543 7788888888875  6777788


Q ss_pred             ccccccCCCCC--CCCCCCCCCCCcEEE---------------EEeeccccccCceeecCCeEEEEcCCCCCCC
Q 014212          368 MCELLWSDPQP--LPGRGPSKRGVGLSF---------------VVRSHEVKDEGYEIEHDGKLITVFSAPNYCD  424 (429)
Q Consensus       368 ~~~~lw~dp~~--~~~~~~~~~~~~~~~---------------iir~h~~~~~g~~~~~~~~~~t~fs~~~y~~  424 (429)
                      ..+.+|++|..  ...|.++++|.+..+               +.|+|+..+.++...+.+..+|+||+++|+.
T Consensus        82 ~~~~~~~~~~~~~~~~w~~~~~g~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~d~~~~~~~~~lt~~~~~~~~~  155 (155)
T COG0639          82 THDLLWSDPDGGDRRIWNPGPRGVPRDGGDVTAVFGIVHTPKLIERAHVLYDIDTGAVFGGGLLTAFSAPNYCY  155 (155)
T ss_pred             cccccCCCCCCCcccccccCCCCCCccccchhhHHhhhcccceEEEEeEEEecCceEEeCCCeeeEEecccccC
Confidence            88889999875  456667666655431               8899999999998888868999999999974

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.74  E-value=1.2e-07  Score=93.33  Aligned_cols=124  Identities=13%  Similarity=0.157  Sum_probs=117.7

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   89 (429)
                      -|.....++..+...+..++|.+.+...+..++..|.....+-..|..+..+|+-++|....+.++..++.+.-+|+-+|
T Consensus         3 l~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~g   82 (700)
T KOG1156|consen    3 LSPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLG   82 (700)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHH
Confidence            35566789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHH
Q 014212           90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK  133 (429)
Q Consensus        90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  133 (429)
                      .++..-.+|++|+.+|+.|+.++|+|..++.-++.++.++++.+
T Consensus        83 l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~  126 (700)
T KOG1156|consen   83 LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYE  126 (700)
T ss_pred             HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999863

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.74  E-value=5.9e-08  Score=93.10  Aligned_cols=69  Identities=14%  Similarity=0.143  Sum_probs=66.9

Q ss_pred             hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014212           43 LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG---YYRRGAAYLAMGKFKEALKDFQQVKKL  111 (429)
Q Consensus        43 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~eA~~~~~~al~~  111 (429)
                      .+|+++.+|+++|.+|+.+|+|++|+.+|++|++++|++.++   |+++|.+|..+|++++|++++++|+++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            589999999999999999999999999999999999999865   999999999999999999999999998

>TIGR00540 hemY_coli hemY protein

Probab=98.73  E-value=1.1e-07  Score=93.96  Aligned_cols=129  Identities=15%  Similarity=0.059  Sum_probs=109.9

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh--HHHH
Q 014212           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYY--ANRAFAHTKLEEYGSAIQDASKAIEIDPRYP--KGYY   86 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~   86 (429)
                      ++++..+..+|..+...|++++|.+.++++++..|++....  ..........++.+.+++.++++++.+|+++  ....
T Consensus       260 ~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~  339 (409)
T TIGR00540       260 RHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINR  339 (409)
T ss_pred             hCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHH
Confidence            35788999999999999999999999999999999987532  2233334556888999999999999999999  8889


Q ss_pred             HHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           87 RRGAAYLAMGKFKEALKDFQ--QVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        87 ~la~~~~~~g~~~eA~~~~~--~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      .+|.++..+|++++|.++|+  ++++..|++.. ...++.++..+|+  .++|..+++
T Consensus       340 sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~--~~~A~~~~~  394 (409)
T TIGR00540       340 ALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGD--KAEAAAMRQ  394 (409)
T ss_pred             HHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCC--HHHHHHHHH
Confidence            99999999999999999999  68888898766 4599999998888  566666665

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain

Probab=98.72  E-value=4.1e-08  Score=83.26  Aligned_cols=81  Identities=28%  Similarity=0.452  Sum_probs=61.3

Q ss_pred             eEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccch
Q 014212          224 FTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFE  303 (429)
Q Consensus       224 ~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~  303 (429)
                      +.+++|+||+...+.++++....   .+.++++||++++++.+.        ++  ....+++++||||....       
T Consensus         2 i~~isD~H~~~~~~~~~~~~~~~---~d~ii~~GD~~~~~~~~~--------~~--~~~~~~~V~GNhD~~~~-------   61 (155)
T cd00841           2 IGVISDTHGSLELLEKALELFGD---VDLIIHAGDVLYPGPLNE--------LE--LKAPVIAVRGNCDGEVD-------   61 (155)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcC---CCEEEECCccccccccch--------hh--cCCcEEEEeCCCCCcCC-------
Confidence            78999999999999999987653   456999999999998765        11  23468899999997543       


Q ss_pred             hhhhcccchHHHHHHHHHhccCccccee--c-CeEEEEecCc
Q 014212          304 GEVRSKLSETFVELFAEVFCCLPLAHVL--N-QKVFVVHGGL  342 (429)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~--~-~~~~~vH~gi  342 (429)
                                        +..+|....+  + .+++++||..
T Consensus        62 ------------------~~~~p~~~~~~~~g~~i~v~Hg~~   85 (155)
T cd00841          62 ------------------FPILPEEAVLEIGGKRIFLTHGHL   85 (155)
T ss_pred             ------------------cccCCceEEEEECCEEEEEECCcc
Confidence                              3456654433  3 4899999865

YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.72  E-value=1.4e-07  Score=91.32  Aligned_cols=105  Identities=18%  Similarity=0.111  Sum_probs=57.5

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh----HH
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP----KG   84 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~   84 (429)
                      .+|.....+..+|..+..+|++++|+..++++++++|+++.++..+|.+++..|++++|+..+++++...|..+    ..
T Consensus       109 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~  188 (355)
T cd05804         109 ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHN  188 (355)
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHH
Confidence            34444445555555555555555555555555555555555555555555555555555555555555544322    23


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 014212           85 YYRRGAAYLAMGKFKEALKDFQQVKKLSP  113 (429)
Q Consensus        85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p  113 (429)
                      |..+|.++..+|++++|+..|++++...|
T Consensus       189 ~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         189 WWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            34455555555555555555555554444

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>TIGR00540 hemY_coli hemY protein

Probab=98.70  E-value=6.8e-07  Score=88.36  Aligned_cols=129  Identities=13%  Similarity=0.113  Sum_probs=116.9

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh-HHHHHHHH
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP-KGYYRRGA   90 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~   90 (429)
                      ..+......|...+..|+++.|.+.+.++.+..|+....+...|.+..++|++++|..+++++.+..|++. .+....+.
T Consensus        82 ~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~  161 (409)
T TIGR00540        82 RKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTR  161 (409)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHH
Confidence            35666778899999999999999999999999999888889999999999999999999999999999875 56666799


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        91 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      ++...|++++|...+++..+..|+++.++..++.++...++  +++|...+.
T Consensus       162 l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d--~~~a~~~l~  211 (409)
T TIGR00540       162 ILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGA--WQALDDIID  211 (409)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh--HHHHHHHHH
Confidence            99999999999999999999999999999999999988888  777777655

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.67  E-value=7.6e-08  Score=71.28  Aligned_cols=67  Identities=24%  Similarity=0.354  Sum_probs=39.7

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 014212           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELN-------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI   77 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   77 (429)
                      |..+.++..+|.+|...|+|++|+++|++++++.       |..+.++.++|.++..+|++++|++++++++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            5556666666666666666666666666666541       112445556666666666666666666666554

...

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.66  E-value=1.6e-07  Score=80.68  Aligned_cols=111  Identities=22%  Similarity=0.234  Sum_probs=105.2

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   88 (429)
                      .+.+.+..++..|..|-..|-+.-|.--|.+++.+.|+-+.++..+|.-+...|+|+.|.+.|...+++||.+-.++.+.
T Consensus        60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR  139 (297)
T COG4785          60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR  139 (297)
T ss_pred             ChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc
Confidence            45667888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 014212           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAA  119 (429)
Q Consensus        89 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~  119 (429)
                      |.+++--|++.-|...+.+-.+-+|++|--.
T Consensus       140 gi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~  170 (297)
T COG4785         140 GIALYYGGRYKLAQDDLLAFYQDDPNDPFRS  170 (297)
T ss_pred             ceeeeecCchHhhHHHHHHHHhcCCCChHHH
Confidence            9999999999999999999999999998543

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.65  E-value=7.2e-07  Score=86.14  Aligned_cols=117  Identities=20%  Similarity=0.210  Sum_probs=106.5

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH
Q 014212           21 ANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKE  100 (429)
Q Consensus        21 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e  100 (429)
                      -..+...++++.|+..+++..+.+|+   +...++.++...++-.+|++.+++++...|.+...+...|..+...++++.
T Consensus       176 l~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~l  252 (395)
T PF09295_consen  176 LKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYEL  252 (395)
T ss_pred             HHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence            34445678999999999999988876   556689999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212          101 ALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus       101 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      |++..++|+.+.|++...|+.|+.+|..+++  ++.|+....
T Consensus       253 AL~iAk~av~lsP~~f~~W~~La~~Yi~~~d--~e~ALlaLN  292 (395)
T PF09295_consen  253 ALEIAKKAVELSPSEFETWYQLAECYIQLGD--FENALLALN  292 (395)
T ss_pred             HHHHHHHHHHhCchhHHHHHHHHHHHHhcCC--HHHHHHHHh
Confidence            9999999999999999999999999999999  888887655

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.65  E-value=3.1e-07  Score=86.73  Aligned_cols=133  Identities=19%  Similarity=0.103  Sum_probs=77.2

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   87 (429)
                      ..+.+-.+++++.|..+-.+|+.++|+++|-+.-.+--+++.+++.++.+|..+.+..+|++++.++..+-|+++..+..
T Consensus       518 ~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilsk  597 (840)
T KOG2003|consen  518 NNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSK  597 (840)
T ss_pred             cCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHH
Confidence            34445556666666666666666666666666555555566666666666666666666666666666666666666666


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      ||.+|-+.|+-.+|.+++-...+.-|.+.+....++..+....=  +++|+.+++
T Consensus       598 l~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf--~ekai~y~e  650 (840)
T KOG2003|consen  598 LADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQF--SEKAINYFE  650 (840)
T ss_pred             HHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHH--HHHHHHHHH
Confidence            66666666665555555555555555555555555544433322  344444444

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=5.1e-07  Score=84.48  Aligned_cols=133  Identities=20%  Similarity=0.269  Sum_probs=112.7

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH----------------------------------HHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVY----------------------------------YAN   53 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~----------------------------------~~~   53 (429)
                      ..-|.+...+..+|.+++..|++.+|+..|+++.-++|.+...                                  |+-
T Consensus       226 ~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV  305 (564)
T KOG1174|consen  226 TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFV  305 (564)
T ss_pred             ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhh
Confidence            3456778889999999999999999999999999988876432                                  344


Q ss_pred             HHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHH
Q 014212           54 RAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK  133 (429)
Q Consensus        54 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  133 (429)
                      -|...+..++++.|+.+-+++|+.+|.+.+++...|.++..+|+.++|+-.|+.|..+.|..-+.+..+-.+|...++  
T Consensus       306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~--  383 (564)
T KOG1174|consen  306 HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKR--  383 (564)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhch--
Confidence            455566778888999999999999999999999999999999999999999999999999998888888887777776  


Q ss_pred             HHHhhcCCc
Q 014212          134 FEEAIAVPE  142 (429)
Q Consensus       134 ~~~a~~~~~  142 (429)
                      +.+|.....
T Consensus       384 ~kEA~~~An  392 (564)
T KOG1174|consen  384 FKEANALAN  392 (564)
T ss_pred             HHHHHHHHH
Confidence            677665544

>PRK15331 chaperone protein SicA; Provisional

Probab=98.63  E-value=1.1e-07  Score=79.00  Aligned_cols=99  Identities=14%  Similarity=-0.002  Sum_probs=91.3

Q ss_pred             HhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014212           42 ELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK  121 (429)
Q Consensus        42 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~  121 (429)
                      .+.++.....+..|.-+++.|++++|...|+-....+|.+++.|..||.++..+++|++|+..|..|..+++++|...+.
T Consensus        31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~  110 (165)
T PRK15331         31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF  110 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence            34556677889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHHHHHhhcCCc
Q 014212          122 VKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus       122 l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      .|.|+..+++  .++|...++
T Consensus       111 agqC~l~l~~--~~~A~~~f~  129 (165)
T PRK15331        111 TGQCQLLMRK--AAKARQCFE  129 (165)
T ss_pred             HHHHHHHhCC--HHHHHHHHH
Confidence            9999999998  677777666

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.62  E-value=3e-08  Score=74.68  Aligned_cols=80  Identities=33%  Similarity=0.527  Sum_probs=70.4

Q ss_pred             HhhCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHh
Q 014212           60 KLEEYGSAIQDASKAIEIDPR--YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEA  137 (429)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a  137 (429)
                      +.|+++.|+..++++++.+|.  +...++.+|.+|..+|++++|+..+++ ...+|.+....+.+|.++..+++  +++|
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~--y~eA   77 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK--YEEA   77 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT---HHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC--HHHH
Confidence            368999999999999999995  467788899999999999999999999 88889999999999999999998  8888


Q ss_pred             hcCCc
Q 014212          138 IAVPE  142 (429)
Q Consensus       138 ~~~~~  142 (429)
                      +..++
T Consensus        78 i~~l~   82 (84)
T PF12895_consen   78 IKALE   82 (84)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            87654

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.62  E-value=3.5e-07  Score=90.02  Aligned_cols=128  Identities=15%  Similarity=0.107  Sum_probs=110.3

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   88 (429)
                      ..|+++......|..+...|+.++|.+.++++++. |.++.....++.+  ..++.+++++.+++.++.+|+++..+..+
T Consensus       258 ~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~l  334 (398)
T PRK10747        258 KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTL  334 (398)
T ss_pred             HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            45667889999999999999999999999999994 5566555555554  45999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        89 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      |.++...+++++|.++|+++++..|++.. +..++.++...|+  .++|..++.
T Consensus       335 grl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~--~~~A~~~~~  385 (398)
T PRK10747        335 GQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHK--PEEAAAMRR  385 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCC--HHHHHHHHH
Confidence            99999999999999999999999999765 4578888888887  667766666

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=4.4e-07  Score=85.34  Aligned_cols=100  Identities=21%  Similarity=0.212  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 014212           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL   93 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   93 (429)
                      ...+.++|.++.+.++|.+|+...+++|+++|+|..++++.|.++..+|+|+.|...|++|++++|.|-.+...+..+..
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~  336 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ  336 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HcCCHHH-HHHHHHHHHHhCC
Q 014212           94 AMGKFKE-ALKDFQQVKKLSP  113 (429)
Q Consensus        94 ~~g~~~e-A~~~~~~al~~~p  113 (429)
                      +..++.+ ..+.|.+.+..-+
T Consensus       337 k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  337 KIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             HHHHHHHHHHHHHHHHhhccc
Confidence            7776654 4677777776554

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=1.2e-07  Score=88.53  Aligned_cols=144  Identities=20%  Similarity=0.136  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   92 (429)
                      ++.-|+--|..++..++++.|+-+-+++++.+|.+..++...|.++.++++.++|+-.|+.|..+.|...+.|-.|-.+|
T Consensus       299 ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsY  378 (564)
T KOG1174|consen  299 TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSY  378 (564)
T ss_pred             chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence            45567777888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCCccc
Q 014212           93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVK-ECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIE  169 (429)
Q Consensus        93 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~  169 (429)
                      ...|++.||...-+.+++.-|.+..++..+| .++..-. ..-++|...++            +++.++|.|.++...
T Consensus       379 LA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp-~~rEKAKkf~e------------k~L~~~P~Y~~AV~~  443 (564)
T KOG1174|consen  379 LAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDP-RMREKAKKFAE------------KSLKINPIYTPAVNL  443 (564)
T ss_pred             HhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCc-hhHHHHHHHHH------------hhhccCCccHHHHHH
Confidence            9999999999999999999999999988886 3332111 11244444444            889999999887554

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.60  E-value=3.4e-07  Score=91.28  Aligned_cols=118  Identities=18%  Similarity=0.232  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH----------------------------HHHhhCHH
Q 014212           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFA----------------------------HTKLEEYG   65 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~----------------------------~~~~g~~~   65 (429)
                      ...|-....+|...|+..+|.....+-++ .|.++..|..+|.+                            ....++|+
T Consensus       424 lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs  502 (777)
T KOG1128|consen  424 LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFS  502 (777)
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHH
Confidence            34455556666666766666666666666 44445444444433                            34468999


Q ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Q 014212           66 SAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL  132 (429)
Q Consensus        66 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  132 (429)
                      +|..+++.+++++|-....||.+|.+..+++++..|..+|.+++.++|++.++|.+++..+..++++
T Consensus       503 ~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k  569 (777)
T KOG1128|consen  503 EADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKK  569 (777)
T ss_pred             HHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999874

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.58  E-value=2.2e-07  Score=95.25  Aligned_cols=133  Identities=22%  Similarity=0.241  Sum_probs=112.6

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH------------------------------------H
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVY------------------------------------Y   51 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~------------------------------------~   51 (429)
                      ..++.-+.++-.+|..|..-.+...|..+|++|.++++.++.+                                    |
T Consensus       486 rld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW  565 (1238)
T KOG1127|consen  486 RLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENW  565 (1238)
T ss_pred             hcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhh
Confidence            3456677788888888888888888888888888888776533                                    4


Q ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212           52 ANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (429)
Q Consensus        52 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  131 (429)
                      ..+|..|...+++..|+..|+.|++.+|.+..+|..+|.+|...|++..|++.|.+|..++|.+.-+.+..+.+...+|+
T Consensus       566 ~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~Gk  645 (1238)
T KOG1127|consen  566 VQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGK  645 (1238)
T ss_pred             hhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhh
Confidence            55677777777888889999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHhhcCCc
Q 014212          132 LKFEEAIAVPE  142 (429)
Q Consensus       132 ~~~~~a~~~~~  142 (429)
                        +.+|+..+.
T Consensus       646 --Ykeald~l~  654 (1238)
T KOG1127|consen  646 --YKEALDALG  654 (1238)
T ss_pred             --HHHHHHHHH
Confidence              666666554

>PF08321 PPP5: PPP5 TPR repeat region; InterPro: IPR013235 This domain is specific to the PPP5 subfamily of serine/threonine phosphatases

Probab=98.57  E-value=2.4e-07  Score=70.28  Aligned_cols=94  Identities=54%  Similarity=0.949  Sum_probs=65.5

Q ss_pred             HHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCCcccCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q 014212          122 VKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVL  201 (429)
Q Consensus       122 l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~li~~l~~~~~l~~~~~~~ll~  201 (429)
                      +..|.....+..|++|+.. +....+.+.......+.+.+.|.|+++....++.+++..|+++|+.++.++.+++..++.
T Consensus         2 l~ec~k~ir~~~FekAI~~-d~~~~s~~e~~d~~~i~Ve~sY~GP~l~~~~it~efv~~mie~FK~~K~Lhkkyv~~Il~   80 (95)
T PF08321_consen    2 LKECEKLIRRIAFEKAIAV-DEEKKSVSESIDLESIDVEDSYDGPRLEDEPITLEFVKAMIEWFKNQKKLHKKYVYQILL   80 (95)
T ss_dssp             HHHHHHHHHHHHHSHHHHH-HHHHHSTTTS-TTSTT---SS--SS--BTTB--HHHHHHHHHHHHCT----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcc-CCcccCHHHhcCccceecCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence            3456666777779999998 333444555667788899999999999966799999999999999999999999999999


Q ss_pred             HHHHHHhhCCCeeee
Q 014212          202 QTREMLRALPSLVDI  216 (429)
Q Consensus       202 ~a~~~l~~~p~~~~~  216 (429)
                      .+.++|+.+|+++++
T Consensus        81 ~~~~llk~~PslVeI   95 (95)
T PF08321_consen   81 EAKKLLKQLPSLVEI   95 (95)
T ss_dssp             HHHHHHHTS-SEEEE
T ss_pred             HHHHHHHhCcCccCC
Confidence            999999999999874

; GO: 0004722 protein serine/threonine phosphatase activity, 0046872 metal ion binding; PDB: 3ICF_B 3H60_B 3H63_A 3H66_A 3H62_B 1A17_A 1S95_B 3H69_A 3H68_D 3H64_D ....

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.57  E-value=8e-07  Score=89.55  Aligned_cols=110  Identities=16%  Similarity=0.085  Sum_probs=94.5

Q ss_pred             CcccHhHHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 014212            7 ENSSVSRAEELKALANEAFRA--------KKYSQAIDLYSQAIEL--NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE   76 (429)
Q Consensus         7 ~~~~p~~~~~~~~~a~~~~~~--------g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   76 (429)
                      ...+|+.+.++-.++..+...        .+..+|.+...+++.+  +|.++.++..+|..+...|++++|...+++|+.
T Consensus       369 i~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~  448 (517)
T PRK10153        369 LKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID  448 (517)
T ss_pred             HHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            456788888888888877554        2345666667776664  777889999999999999999999999999999


Q ss_pred             hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014212           77 IDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD  117 (429)
Q Consensus        77 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~  117 (429)
                      ++| +..+|..+|.++...|++++|++.|++|++++|.++.
T Consensus       449 L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        449 LEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             cCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            999 5899999999999999999999999999999999986

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.56  E-value=8.6e-08  Score=70.99  Aligned_cols=67  Identities=25%  Similarity=0.400  Sum_probs=57.8

Q ss_pred             CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC---C----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014212           45 SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID---P----RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL  111 (429)
Q Consensus        45 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p----~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~  111 (429)
                      |+.+.++.++|.+|..+|++++|+++|++++.+.   +    ..+.++.++|.++..+|++++|++++++++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3446789999999999999999999999999762   1    23568999999999999999999999999986

...

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.56  E-value=2.7e-06  Score=83.73  Aligned_cols=128  Identities=15%  Similarity=0.108  Sum_probs=106.4

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHhhCHHHHHHHHHHHHHhCCCChHH-HHHHH
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANR-AFAHTKLEEYGSAIQDASKAIEIDPRYPKG-YYRRG   89 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-g~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la   89 (429)
                      ..+......|...+..|+|++|.+...++-+..+ ++..++.+ +.+..+.|+++.|..+++++.+.+|++..+ ....+
T Consensus        82 ~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a  160 (398)
T PRK10747         82 RRARKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRV  160 (398)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence            4556677889999999999999988777665433 34555544 666699999999999999999999987544 34558


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      .++...|++++|...++++.+.+|+++.++..++.++...++  +++|+..+.
T Consensus       161 ~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gd--w~~a~~~l~  211 (398)
T PRK10747        161 RIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGA--WSSLLDILP  211 (398)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh--HHHHHHHHH
Confidence            999999999999999999999999999999999999988887  788886665

>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain

Probab=98.52  E-value=6.3e-07  Score=80.24  Aligned_cols=109  Identities=22%  Similarity=0.291  Sum_probs=70.6

Q ss_pred             ceEEEccCCCCHHHHH-HHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchh---
Q 014212          223 HFTVCGDVHGQFYDLL-NIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNK---  298 (429)
Q Consensus       223 ~~~v~GDihG~~~~l~-~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~---  298 (429)
                      ++.++||+||++.... +.++..    ..+.+++.||+++   .+.+++..|.++    |..++.++||||.+....   
T Consensus         2 rIa~isDiHg~~~~~~~~~l~~~----~pD~Vl~~GDi~~---~~~~~~~~l~~l----~~p~~~V~GNHD~~~~~~~~~   70 (238)
T cd07397           2 RIAIVGDVHGQWDLEDIKALHLL----QPDLVLFVGDFGN---ESVQLVRAISSL----PLPKAVILGNHDAWYDATFRK   70 (238)
T ss_pred             EEEEEecCCCCchHHHHHHHhcc----CCCEEEECCCCCc---ChHHHHHHHHhC----CCCeEEEcCCCcccccccccc
Confidence            4889999999987642 333332    2357999999986   457777777655    345888999999765320   


Q ss_pred             -h----------------cc------------------------ch-hhhhccc-chHHHHHHHHHhccCcccceecCeE
Q 014212          299 -I----------------YG------------------------FE-GEVRSKL-SETFVELFAEVFCCLPLAHVLNQKV  335 (429)
Q Consensus       299 -~----------------~~------------------------~~-~~~~~~~-~~~~~~~~~~~~~~lp~~~~~~~~~  335 (429)
                       .                ++                        +. .++...| -....+.+...++.++.+......|
T Consensus        71 k~~~l~~~L~~lg~~~l~~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~~fgi~s~~eA~~~ive~~~~~~~~~~~V  150 (238)
T cd07397          71 KGDRVQEQLELLGDLHCGWGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKAVYGVISLEESAQRIIAAAKKAPPDLPLI  150 (238)
T ss_pred             hHHHHHHHHHHhCCcEEeecccccCCCCeEEEeeCCccCCCccccCHHHHHHHhCCCCHHHHHHHHHHHhhhcCCCCCeE
Confidence             0                00                        00 0223333 2346677778888887444445589


Q ss_pred             EEEecCc
Q 014212          336 FVVHGGL  342 (429)
Q Consensus       336 ~~vH~gi  342 (429)
                      |+.|+++
T Consensus       151 liaH~~~  157 (238)
T cd07397         151 LLAHNGP  157 (238)
T ss_pred             EEeCcCC
Confidence            9999998

DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy

>TIGR00040 yfcE phosphoesterase, MJ0936 family

Probab=98.51  E-value=3.6e-07  Score=77.77  Aligned_cols=63  Identities=24%  Similarity=0.297  Sum_probs=46.6

Q ss_pred             ceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccc
Q 014212          223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK  294 (429)
Q Consensus       223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~  294 (429)
                      ++.+++|+||+...+..+++.....+..+.++++||++     +.+++..+..+.    ..++.++||||..
T Consensus         2 ~i~viSD~H~~~~~~~~~~~~~~~~~~~d~ii~~GD~~-----~~~~~~~l~~~~----~~~~~V~GN~D~~   64 (158)
T TIGR00040         2 KILVISDTHGPLRATELPVELFNLESNVDLVIHAGDLT-----SPFVLKEFEDLA----AKVIAVRGNNDGE   64 (158)
T ss_pred             EEEEEecccCCcchhHhHHHHHhhccCCCEEEEcCCCC-----CHHHHHHHHHhC----CceEEEccCCCch
Confidence            48899999999987766655544332445799999999     467777776542    2488999999973

Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.50  E-value=1e-06  Score=85.07  Aligned_cols=98  Identities=24%  Similarity=0.319  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 014212           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL   93 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   93 (429)
                      +++...+|.++...++-.+|++.+.++++.+|.+...+...+..+...++++.|+...++|+.+.|++-.+|+.||.+|.
T Consensus       200 pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi  279 (395)
T PF09295_consen  200 PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYI  279 (395)
T ss_pred             CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            34566789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHh
Q 014212           94 AMGKFKEALKDFQQVKKL  111 (429)
Q Consensus        94 ~~g~~~eA~~~~~~al~~  111 (429)
                      .+|++++|+..++.+--.
T Consensus       280 ~~~d~e~ALlaLNs~Pm~  297 (395)
T PF09295_consen  280 QLGDFENALLALNSCPML  297 (395)
T ss_pred             hcCCHHHHHHHHhcCcCC
Confidence            999999999887755443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.48  E-value=1.1e-06  Score=80.59  Aligned_cols=104  Identities=27%  Similarity=0.198  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHH-HHhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 014212           48 AVYYANRAFAH-TKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQ  120 (429)
Q Consensus        48 ~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~  120 (429)
                      ...++..|..+ +..|+|++|+..|++.+...|++   +.+++.+|.+|+..|++++|+..|++++...|++   +++++
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            46778888876 66799999999999999999998   5799999999999999999999999999998875   67888


Q ss_pred             HHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCC
Q 014212          121 KVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSG  165 (429)
Q Consensus       121 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~  165 (429)
                      .++.++..+++  .++|...++            ++++..|+...
T Consensus       222 klg~~~~~~g~--~~~A~~~~~------------~vi~~yP~s~~  252 (263)
T PRK10803        222 KVGVIMQDKGD--TAKAKAVYQ------------QVIKKYPGTDG  252 (263)
T ss_pred             HHHHHHHHcCC--HHHHHHHHH------------HHHHHCcCCHH
Confidence            88888877776  666666666            67776666543

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.46  E-value=1e-05  Score=68.09  Aligned_cols=119  Identities=23%  Similarity=0.301  Sum_probs=104.8

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC--ChHHHHHH
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIE-LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--YPKGYYRR   88 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l   88 (429)
                      .+....+.+|+.+...|++.+|...|++++. +...++..+..++.+.+..+++.+|...+++..+.+|.  .++.+..+
T Consensus        87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~  166 (251)
T COG4700          87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF  166 (251)
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence            4456788999999999999999999999986 46678899999999999999999999999999999885  67889999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (429)
Q Consensus        89 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  131 (429)
                      |.++..+|++.+|...|+.++...|. +++....+..+..+|+
T Consensus       167 aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr  208 (251)
T COG4700         167 ARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGR  208 (251)
T ss_pred             HHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcc
Confidence            99999999999999999999999887 4556666777766665

>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily []

Probab=98.39  E-value=5.6e-07  Score=76.22  Aligned_cols=61  Identities=30%  Similarity=0.489  Sum_probs=44.8

Q ss_pred             ceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccc
Q 014212          223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSM  296 (429)
Q Consensus       223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~  296 (429)
                      ++.++||+|+..+.+.++++...   ..+.++++||++++    .+++..+...      .+++++||||....
T Consensus         2 ki~~~sD~H~~~~~~~~~~~~~~---~~d~vi~~GDi~~~----~~~~~~~~~~------~~~~v~GNHD~~~~   62 (156)
T PF12850_consen    2 KIAVISDLHGNLDALEAVLEYIN---EPDFVIILGDIFDP----EEVLELLRDI------PVYVVRGNHDNWAF   62 (156)
T ss_dssp             EEEEEE--TTTHHHHHHHHHHHT---TESEEEEES-SCSH----HHHHHHHHHH------EEEEE--CCHSTHH
T ss_pred             EEEEEeCCCCChhHHHHHHHHhc---CCCEEEECCCchhH----HHHHHHHhcC------CEEEEeCCcccccc
Confidence            58999999999999999999873   24569999999993    7777777554      68999999996553

; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.38  E-value=3.5e-06  Score=83.23  Aligned_cols=119  Identities=10%  Similarity=-0.017  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   92 (429)
                      +...|+.-++....+++.++|++.++++++..|+....|..+|+++.++++.+.|...|...++.-|..+..|..|+.+-
T Consensus       650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakle  729 (913)
T KOG0495|consen  650 TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLE  729 (913)
T ss_pred             cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHH
Confidence            34555566666666666777777777777777777777777777777777777777777776666677677777777777


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212           93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (429)
Q Consensus        93 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  131 (429)
                      ...|+.-.|...++++...+|.+...|...-.+....|.
T Consensus       730 Ek~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn  768 (913)
T KOG0495|consen  730 EKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGN  768 (913)
T ss_pred             HHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCC
Confidence            666667777777777777777766666555555555444

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.38  E-value=4.8e-06  Score=66.66  Aligned_cols=90  Identities=16%  Similarity=0.138  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 014212           49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN---DPDAAQKV  122 (429)
Q Consensus        49 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~---~~~~~~~l  122 (429)
                      .+++.+|.++-.+|+.++|+..|++++....+.   ..++..+|.++..+|++++|+..+++++...|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            467899999999999999999999999975443   568999999999999999999999999999898   77788888


Q ss_pred             HHHHHHHHhHHHHHhhcC
Q 014212          123 KECEKAVKKLKFEEAIAV  140 (429)
Q Consensus       123 ~~~~~~~~~~~~~~a~~~  140 (429)
                      +.++...++  .++|+..
T Consensus        82 Al~L~~~gr--~~eAl~~   97 (120)
T PF12688_consen   82 ALALYNLGR--PKEALEW   97 (120)
T ss_pred             HHHHHHCCC--HHHHHHH
Confidence            888777777  4555543

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.37  E-value=2.4e-06  Score=84.34  Aligned_cols=132  Identities=13%  Similarity=0.122  Sum_probs=119.3

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   87 (429)
                      ...|+..+.+--.|..+...|+-++|..+-+.+++.++.+...|.-+|.++...++|++|+.||+.|+.++|+|...|.-
T Consensus        35 ~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrD  114 (700)
T KOG1156|consen   35 KKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRD  114 (700)
T ss_pred             HhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            35678888888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCC
Q 014212           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVP  141 (429)
Q Consensus        88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~  141 (429)
                      ++.+..++++++-....-.+.+++.|.....|..++..+...+.  +..|....
T Consensus       115 lslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~--y~~A~~il  166 (700)
T KOG1156|consen  115 LSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE--YKMALEIL  166 (700)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence            99999999999999999999999999999999999888888887  45555443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.35  E-value=5e-07  Score=92.76  Aligned_cols=118  Identities=16%  Similarity=0.145  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 014212           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL   93 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   93 (429)
                      ...|..+|-.|...+++.+|+..++.|++.+|.+...|..+|.+|...|++..|++.|.+|..++|.+..+.|..|....
T Consensus       562 k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ec  641 (1238)
T KOG1127|consen  562 KENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMEC  641 (1238)
T ss_pred             HhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHH
Confidence            35677799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212           94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (429)
Q Consensus        94 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  131 (429)
                      .+|+|.+|+..+...+........+...+++++.+...
T Consensus       642 d~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~ak  679 (1238)
T KOG1127|consen  642 DNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAK  679 (1238)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            99999999999999999887777777777777766554

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.34  E-value=4.1e-06  Score=82.73  Aligned_cols=119  Identities=18%  Similarity=0.128  Sum_probs=68.4

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH---------------------------------HHHH
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANR---------------------------------AFAH   58 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---------------------------------g~~~   58 (429)
                      .....|.-.|..+...|+...|...+.+|++.+|++..+|+.-                                 +...
T Consensus       582 kae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~e  661 (913)
T KOG0495|consen  582 KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLE  661 (913)
T ss_pred             cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHH
Confidence            3344455556666666666666666666666666665555444                                 4444


Q ss_pred             HHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014212           59 TKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK  130 (429)
Q Consensus        59 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~  130 (429)
                      ..+++.++|+..++.+++..|++...|..+|+++.++++.+.|.+.|...++..|..+..|..++.+....+
T Consensus       662 r~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~  733 (913)
T KOG0495|consen  662 RYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG  733 (913)
T ss_pred             HHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence            445555555555555555555555555555555555555555555555555555555555555555544443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.32  E-value=1.7e-05  Score=79.62  Aligned_cols=99  Identities=19%  Similarity=0.123  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 014212           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL   93 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   93 (429)
                      ..+++.+|+.|...|++++|+++.++|++..|..+..|...|.++...|++.+|.++++.|..+|+.+-..-...+..+.
T Consensus       194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L  273 (517)
T PF12569_consen  194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL  273 (517)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence            57789999999999999999999999999999999999999999999999999999999999999999888888899999


Q ss_pred             HcCCHHHHHHHHHHHHHhC
Q 014212           94 AMGKFKEALKDFQQVKKLS  112 (429)
Q Consensus        94 ~~g~~~eA~~~~~~al~~~  112 (429)
                      +.|+.++|.+.+..-.+.+
T Consensus       274 Ra~~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  274 RAGRIEEAEKTASLFTRED  292 (517)
T ss_pred             HCCCHHHHHHHHHhhcCCC
Confidence            9999999999998776655

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.31  E-value=8.7e-07  Score=81.10  Aligned_cols=99  Identities=24%  Similarity=0.224  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014212           51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK  130 (429)
Q Consensus        51 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~  130 (429)
                      .-..|.-|+++|+|++|++||.+++..+|-|+-.+.+.|.+|.++.+|..|...+..|+.++..+..++...+.+...+|
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             hHHHHHhhcCCccccccccccccccccccCCCC
Q 014212          131 KLKFEEAIAVPESERHSVADSIDYQSIEVEPQY  163 (429)
Q Consensus       131 ~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~  163 (429)
                      +  ..+|..-++            .+++++|..
T Consensus       180 ~--~~EAKkD~E------------~vL~LEP~~  198 (536)
T KOG4648|consen  180 N--NMEAKKDCE------------TVLALEPKN  198 (536)
T ss_pred             h--HHHHHHhHH------------HHHhhCccc
Confidence            7  566666666            677777774

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.31  E-value=1.1e-05  Score=85.02  Aligned_cols=117  Identities=13%  Similarity=0.061  Sum_probs=101.9

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-----------
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-----------   78 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------   78 (429)
                      .+.+-.+++.+|.+|-+.|++++|...|+++++.+|+++.+..++|..|... ++++|++++.+|+...           
T Consensus       112 ~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e  190 (906)
T PRK14720        112 YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEE  190 (906)
T ss_pred             hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHH
Confidence            3455579999999999999999999999999999999999999999999999 9999999999998652           


Q ss_pred             ---------CCChHH--------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014212           79 ---------PRYPKG--------------------YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK  127 (429)
Q Consensus        79 ---------p~~~~~--------------------~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~  127 (429)
                               |++.+.                    +.-+-..|...+++++++..++.+++++|+|..+...++.++.
T Consensus       191 ~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        191 IWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             HHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence                     333322                    2233377888899999999999999999999999999999987

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.30  E-value=4.1e-05  Score=67.97  Aligned_cols=124  Identities=21%  Similarity=0.207  Sum_probs=98.8

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhh-----------CHHHHHHHHHHH
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLE-----------EYGSAIQDASKA   74 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g-----------~~~~A~~~~~~a   74 (429)
                      ..+-...+.+.+|..+++.|++++|+..+++.++..|++   +.+++.+|.+++.+.           ...+|+..|+..
T Consensus        37 ~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~l  116 (203)
T PF13525_consen   37 NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEEL  116 (203)
T ss_dssp             TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHH
Confidence            345667889999999999999999999999999999886   467889999877654           345899999999


Q ss_pred             HHhCCCChHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHHhH
Q 014212           75 IEIDPRYPKG-----------------YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD---AAQKVKECEKAVKKL  132 (429)
Q Consensus        75 l~~~p~~~~~-----------------~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~---~~~~l~~~~~~~~~~  132 (429)
                      +...|++..+                 -+.+|..|.+.|.+..|+.-++.+++..|+.+.   ++..+...+..+|..
T Consensus       117 i~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~  194 (203)
T PF13525_consen  117 IKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLK  194 (203)
T ss_dssp             HHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-H
T ss_pred             HHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCCh
Confidence            9999987532                 355789999999999999999999999998864   567777777777764

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.28  E-value=2.7e-05  Score=69.43  Aligned_cols=150  Identities=21%  Similarity=0.236  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh---HHHH
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP---KGYY   86 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~   86 (429)
                      .+..+++.|...++.|+|++|+..|+++....|.+   ..+...++.++++.+++++|+...++-+.+.|.++   .+++
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            46789999999999999999999999999988775   57788999999999999999999999999999865   4677


Q ss_pred             HHHHHHHHcCC--------HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHhHHHHHhhcCCcccccccccccccc
Q 014212           87 RRGAAYLAMGK--------FKEALKDFQQVKKLSPND---PDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQ  155 (429)
Q Consensus        87 ~la~~~~~~g~--------~~eA~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~  155 (429)
                      ..|.++...=+        ..+|+..|+..+..-|++   +++...+..+...+...+..=|.-+.+++.+..|......
T Consensus       113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~  192 (254)
T COG4105         113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE  192 (254)
T ss_pred             HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence            77888765422        367999999999999987   4556666666666666544445555666666666666666


Q ss_pred             ccccCCC
Q 014212          156 SIEVEPQ  162 (429)
Q Consensus       156 ~l~~~~~  162 (429)
                      +++-.|.
T Consensus       193 v~e~y~~  199 (254)
T COG4105         193 VLENYPD  199 (254)
T ss_pred             HHhcccc
Confidence            6655443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.24  E-value=1.5e-05  Score=67.84  Aligned_cols=102  Identities=24%  Similarity=0.313  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014212           51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYP-----KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC  125 (429)
Q Consensus        51 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~  125 (429)
                      +-.-|.-++..|+|++|..-|..||.+-|.-+     -.|.+.|.+..++++.+.|+..+.+|++++|.+..++...+.+
T Consensus        98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea  177 (271)
T KOG4234|consen   98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA  177 (271)
T ss_pred             HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence            34568889999999999999999999988643     3688899999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCC
Q 014212          126 EKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA  166 (429)
Q Consensus       126 ~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~  166 (429)
                      |..+.+  +++|+.-|.            +.++.+|....+
T Consensus       178 yek~ek--~eealeDyK------------ki~E~dPs~~ea  204 (271)
T KOG4234|consen  178 YEKMEK--YEEALEDYK------------KILESDPSRREA  204 (271)
T ss_pred             HHhhhh--HHHHHHHHH------------HHHHhCcchHHH
Confidence            988866  777777776            788888875433

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.22  E-value=9.2e-05  Score=67.49  Aligned_cols=123  Identities=15%  Similarity=0.142  Sum_probs=100.7

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhh------------------CHHHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLE------------------EYGSAI   68 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g------------------~~~~A~   68 (429)
                      .+-...+.+.+|.++++.+++++|+..+++.++..|++   +.+++.+|.+++.++                  ...+|+
T Consensus        65 s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~  144 (243)
T PRK10866         65 GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAF  144 (243)
T ss_pred             ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHH
Confidence            34555678999999999999999999999999998886   567889998865543                  135788


Q ss_pred             HHHHHHHHhCCCChHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH
Q 014212           69 QDASKAIEIDPRYPKG-----------------YYRRGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQKVKECEKA  128 (429)
Q Consensus        69 ~~~~~al~~~p~~~~~-----------------~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~l~~~~~~  128 (429)
                      +.|++.++..|+...+                 -+..|..|.+.|.+..|+.-++.+++..|+.   ++++..+...+..
T Consensus       145 ~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~  224 (243)
T PRK10866        145 RDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQ  224 (243)
T ss_pred             HHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence            9999999999986421                 3456888999999999999999999998875   5677888888877


Q ss_pred             HHhH
Q 014212          129 VKKL  132 (429)
Q Consensus       129 ~~~~  132 (429)
                      +|..
T Consensus       225 lg~~  228 (243)
T PRK10866        225 LQLN  228 (243)
T ss_pred             cCCh
Confidence            7763

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.20  E-value=4.8e-05  Score=76.45  Aligned_cols=132  Identities=16%  Similarity=0.141  Sum_probs=99.1

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-----CHHHHHHHHHHHHHhC----
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-----EYGSAIQDASKAIEID----   78 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~----   78 (429)
                      ..-.+....+-..|..+++.|++++|...|+..++.+|++...+..+..+.....     +.+.....|+......    
T Consensus        32 ~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~  111 (517)
T PF12569_consen   32 KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSD  111 (517)
T ss_pred             hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCcccc
Confidence            3445667788889999999999999999999999999999999888888773222     2222222222211000    


Q ss_pred             --------------------------------------------C-------------------------------CC--
Q 014212           79 --------------------------------------------P-------------------------------RY--   81 (429)
Q Consensus        79 --------------------------------------------p-------------------------------~~--   81 (429)
                                                                  |                               ..  
T Consensus       112 ~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~  191 (517)
T PF12569_consen  112 APRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPS  191 (517)
T ss_pred             chhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCch
Confidence                                                        0                               01  


Q ss_pred             --hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCC
Q 014212           82 --PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVP  141 (429)
Q Consensus        82 --~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~  141 (429)
                        ..+++.+|+.|...|++++|+++.++|++..|..++.+...|.++...|+  +.+|....
T Consensus       192 ~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~--~~~Aa~~~  251 (517)
T PF12569_consen  192 TLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD--LKEAAEAM  251 (517)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence              12568889999999999999999999999999999999999999999998  55555543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.20  E-value=5.7e-07  Score=82.44  Aligned_cols=110  Identities=37%  Similarity=0.517  Sum_probs=100.9

Q ss_pred             CCCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 014212            5 ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG   84 (429)
Q Consensus         5 ~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~   84 (429)
                      +.+.+.-+.+.-....|..++..|.+++|++.|..+++++|..+..+..++.++.++++...|+..|..|+.++|+....
T Consensus       105 e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~  184 (377)
T KOG1308|consen  105 EITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKG  184 (377)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccc
Confidence            34445556666777788889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 014212           85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPN  114 (429)
Q Consensus        85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~  114 (429)
                      |-..|.+...+|++++|..++..+++++-+
T Consensus       185 ykfrg~A~rllg~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  185 YKFRGYAERLLGNWEEAAHDLALACKLDYD  214 (377)
T ss_pred             cchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence            999999999999999999999999998754

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.20  E-value=1.1e-05  Score=75.51  Aligned_cols=120  Identities=16%  Similarity=0.178  Sum_probs=97.0

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh--CHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE--EYGSAIQDASKAIEIDPRYPKGYYRRG   89 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la   89 (429)
                      .+.+.......++.+.++++.|.+.++..-+.+.+..-....-+.+.+..|  ++++|...|+......+.++..+..+|
T Consensus       129 ~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A  208 (290)
T PF04733_consen  129 GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLA  208 (290)
T ss_dssp             TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence            456677778889999999999999999988777766555555555655555  599999999998877788899999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212           90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (429)
Q Consensus        90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  131 (429)
                      .++..+|++++|.+.+++++..+|++++++.++..+...+|+
T Consensus       209 ~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk  250 (290)
T PF04733_consen  209 VCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK  250 (290)
T ss_dssp             HHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999988888776

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.20  E-value=4.6e-06  Score=54.12  Aligned_cols=41  Identities=24%  Similarity=0.419  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014212           83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK  123 (429)
Q Consensus        83 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~  123 (429)
                      .+++.+|.+|..+|++++|+..|+++++.+|+++.++..++
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            34555555555555555555555555555555555555544

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.18  E-value=8.7e-06  Score=64.42  Aligned_cols=90  Identities=20%  Similarity=0.191  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHH
Q 014212           51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP----DAAQKVKECE  126 (429)
Q Consensus        51 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~----~~~~~l~~~~  126 (429)
                      +-.-|.++...|+.+.|++.|.+++.+-|..+.+|.+.+.++.-+|+.++|+..+++|+++.....    .++...+.++
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly  125 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY  125 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            445688889999999999999999999999999999999999999999999999999999986543    3567778888


Q ss_pred             HHHHhHHHHHhhcCCc
Q 014212          127 KAVKKLKFEEAIAVPE  142 (429)
Q Consensus       127 ~~~~~~~~~~a~~~~~  142 (429)
                      +..++  .+.|..-++
T Consensus       126 Rl~g~--dd~AR~DFe  139 (175)
T KOG4555|consen  126 RLLGN--DDAARADFE  139 (175)
T ss_pred             HHhCc--hHHHHHhHH
Confidence            88887  455555444

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.17  E-value=1.9e-06  Score=52.29  Aligned_cols=32  Identities=34%  Similarity=0.634  Sum_probs=20.6

Q ss_pred             HHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Q 014212           71 ASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL  102 (429)
Q Consensus        71 ~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~  102 (429)
                      |++||+++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            55666666666666666666666666666664

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.17  E-value=4.2e-06  Score=54.30  Aligned_cols=41  Identities=20%  Similarity=0.221  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 014212           50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA   90 (429)
Q Consensus        50 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~   90 (429)
                      ++..+|.+|..+|++++|++.|+++++.+|+++.+|..+|.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            45556666666666666666666666666666666665553

>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain

Probab=98.16  E-value=5.8e-06  Score=73.88  Aligned_cols=70  Identities=9%  Similarity=0.128  Sum_probs=55.2

Q ss_pred             ceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccc
Q 014212          223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK  294 (429)
Q Consensus       223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~  294 (429)
                      ++.+++|+||++..+.++++..... ..+.+|++||++++|+..-++..++..+.. .+..++.++||||..
T Consensus         6 kIl~iSDiHgn~~~le~l~~~~~~~-~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~-l~~pv~~V~GNhD~~   75 (224)
T cd07388           6 YVLATSNPKGDLEALEKLVGLAPET-GADAIVLIGNLLPKAAKSEDYAAFFRILGE-AHLPTFYVPGPQDAP   75 (224)
T ss_pred             EEEEEEecCCCHHHHHHHHHHHhhc-CCCEEEECCCCCCCCCCHHHHHHHHHHHHh-cCCceEEEcCCCChH
Confidence            5899999999999999998865322 245699999999999877777777766643 235688999999975

This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,

>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain

Probab=98.14  E-value=8.5e-06  Score=67.26  Aligned_cols=60  Identities=18%  Similarity=0.341  Sum_probs=40.5

Q ss_pred             eEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcH--HHHHHHHHhhhhCCCeEEEecCCcccc
Q 014212          224 FTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSV--EVILTLFAFKCMCPSAIYLSRGNHESK  294 (429)
Q Consensus       224 ~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~--e~~~~l~~lk~~~p~~~~~lrGNhe~~  294 (429)
                      +.+++|+||+..    .+   . ....+.++++||++++|..+.  +.+.++..++  . ..+++++||||..
T Consensus         2 i~~isD~H~~~~----~~---~-~~~~D~vi~~GD~~~~~~~~~~~~~~~~l~~~~--~-~~~~~v~GNHD~~   63 (135)
T cd07379           2 FVCISDTHSRHR----TI---S-IPDGDVLIHAGDLTERGTLEELQKFLDWLKSLP--H-PHKIVIAGNHDLT   63 (135)
T ss_pred             EEEEeCCCCCCC----cC---c-CCCCCEEEECCCCCCCCCHHHHHHHHHHHHhCC--C-CeEEEEECCCCCc
Confidence            789999999987    11   1 123456999999999986532  3445554442  2 2367899999954

239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.11  E-value=9.3e-06  Score=76.01  Aligned_cols=127  Identities=24%  Similarity=0.259  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC------
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNS--Q----NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR------   80 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------   80 (429)
                      .+..+...|+.|...++|++|.+.|.++.+..-  .    -+..+...+.++.+. ++++|++++++|+.+.-.      
T Consensus        34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~  112 (282)
T PF14938_consen   34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQ  112 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHH
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHH
Confidence            345555666666666777777777777655321  1    134455555555444 677777777777665321      


Q ss_pred             ChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           81 YPKGYYRRGAAYLAM-GKFKEALKDFQQVKKLSP--ND----PDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        81 ~~~~~~~la~~~~~~-g~~~eA~~~~~~al~~~p--~~----~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      -+.++..+|.+|... |++++|+++|++|.++..  +.    ......++.++..+++  +++|+..++
T Consensus       113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~--y~~A~~~~e  179 (282)
T PF14938_consen  113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR--YEEAIEIYE  179 (282)
T ss_dssp             HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC--HHHHHHHHH
Confidence            134566667777666 677777777777766521  11    2244555555555554  666666555

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.04  E-value=3.2e-05  Score=66.76  Aligned_cols=77  Identities=19%  Similarity=0.151  Sum_probs=71.2

Q ss_pred             CCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh
Q 014212            6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP   82 (429)
Q Consensus         6 ~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~   82 (429)
                      +-...|..+.+...+|..+...|+|+.|.+.|+..++++|....+..|+|..++--|+++-|.+.+.+-.+.||++|
T Consensus        91 aLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP  167 (297)
T COG4785          91 ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP  167 (297)
T ss_pred             hhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence            34567899999999999999999999999999999999999999999999999999999999999999888887765

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.03  E-value=3.8e-05  Score=68.18  Aligned_cols=127  Identities=16%  Similarity=0.196  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC----C--CChHHHH
Q 014212           14 AEELKALANEAFRAKKYSQAIDLYSQAIELN-SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID----P--RYPKGYY   86 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p--~~~~~~~   86 (429)
                      ....+.+++.+...|+|.-.+..+.++++.+ |.++.....+|.+-++.||.+.|..+|+++-+..    .  .+.-+.-
T Consensus       177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~  256 (366)
T KOG2796|consen  177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM  256 (366)
T ss_pred             HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence            4567788899999999999999999999998 6678888899999999999999999999654332    2  2345677


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        87 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      +.+.+|..++++.+|...|.+++..+|.++.+..+.+.|+..+|+  ...|+...+
T Consensus       257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~--l~DAiK~~e  310 (366)
T KOG2796|consen  257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK--LKDALKQLE  310 (366)
T ss_pred             hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH--HHHHHHHHH
Confidence            888999999999999999999999999999999999999999998  677777766

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.03  E-value=5.1e-06  Score=50.41  Aligned_cols=34  Identities=41%  Similarity=0.463  Sum_probs=31.7

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHH
Q 014212           36 LYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQ   69 (429)
Q Consensus        36 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~   69 (429)
                      +|++|++++|+++.+|+++|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            3789999999999999999999999999999863

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.02  E-value=4.8e-05  Score=64.13  Aligned_cols=80  Identities=18%  Similarity=0.142  Sum_probs=61.3

Q ss_pred             cccHhHHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC-----------HHH
Q 014212            8 NSSVSRAEELKALANEAFRAKK----------YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE-----------YGS   66 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-----------~~~   66 (429)
                      ..+|.+++.+.+-|.++....+          +++|+.-|++|+.++|+...+++++|.+|..++.           |++
T Consensus        19 ~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~k   98 (186)
T PF06552_consen   19 AKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEK   98 (186)
T ss_dssp             HH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred             HhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHH
Confidence            3578899999999998876643          4668888999999999999999999999988764           778


Q ss_pred             HHHHHHHHHHhCCCChHHHHH
Q 014212           67 AIQDASKAIEIDPRYPKGYYR   87 (429)
Q Consensus        67 A~~~~~~al~~~p~~~~~~~~   87 (429)
                      |.++|++|...+|++...+-.
T Consensus        99 A~~~FqkAv~~~P~ne~Y~ks  119 (186)
T PF06552_consen   99 ATEYFQKAVDEDPNNELYRKS  119 (186)
T ss_dssp             HHHHHHHHHHH-TT-HHHHHH
T ss_pred             HHHHHHHHHhcCCCcHHHHHH
Confidence            999999999999988654433

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.01  E-value=4.2e-05  Score=68.86  Aligned_cols=102  Identities=29%  Similarity=0.336  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 014212           51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQKVKE  124 (429)
Q Consensus        51 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~l~~  124 (429)
                      .++.|.-+++.|+|..|.+.|..-+...|+.   +.++|.||.+++.+|++++|...|..+.+-.|++   |++++.++.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            7889999999999999999999999999985   6799999999999999999999999999988765   678999999


Q ss_pred             HHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCC
Q 014212          125 CEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA  166 (429)
Q Consensus       125 ~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~  166 (429)
                      +...+++  .++|...++            ++++-.|+...+
T Consensus       224 ~~~~l~~--~d~A~atl~------------qv~k~YP~t~aA  251 (262)
T COG1729         224 SLGRLGN--TDEACATLQ------------QVIKRYPGTDAA  251 (262)
T ss_pred             HHHHhcC--HHHHHHHHH------------HHHHHCCCCHHH
Confidence            9999888  566666665            666666665443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.99  E-value=0.00018  Score=66.54  Aligned_cols=118  Identities=16%  Similarity=0.136  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHH--------------HhCC-
Q 014212           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAI--------------EIDP-   79 (429)
Q Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--------------~~~p-   79 (429)
                      ....-+|.+++..|+|++|+..|+-+.+.+.-++..+.++|.|++-+|.|.+|.....+|-              +++. 
T Consensus        58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndE  137 (557)
T KOG3785|consen   58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDE  137 (557)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcH
Confidence            3444578999999999999999999999877789999999999999999999987766542              2211 


Q ss_pred             -----------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Q 014212           80 -----------RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL  132 (429)
Q Consensus        80 -----------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  132 (429)
                                 +..+-...||.+++..-.|.+|+..|.+.+.-+|+.......++.|+..+.-+
T Consensus       138 k~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYy  201 (557)
T KOG3785|consen  138 KRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYY  201 (557)
T ss_pred             HHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchh
Confidence                       22344566777788778889999999999999998888888888888777654

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.99  E-value=1.3e-05  Score=48.69  Aligned_cols=32  Identities=38%  Similarity=0.844  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 014212           83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN  114 (429)
Q Consensus        83 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~  114 (429)
                      .+|+++|.+|..+|++++|+.+|++|++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            34555555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain

Probab=97.98  E-value=2.3e-05  Score=63.55  Aligned_cols=66  Identities=27%  Similarity=0.450  Sum_probs=48.3

Q ss_pred             EEccCCCCHHHHHHHH--HHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcc
Q 014212          226 VCGDVHGQFYDLLNIF--ELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHE  292 (429)
Q Consensus       226 v~GDihG~~~~l~~~l--~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe  292 (429)
                      ++||+|+.........  .... ....+.++++||+++.+....+...............++++.||||
T Consensus         2 ~~gD~h~~~~~~~~~~~~~~~~-~~~~~~vi~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD   69 (131)
T cd00838           2 VISDIHGNLEALEAVLEAALAA-AEKPDFVLVLGDLVGDGPDPEEVLAAALALLLLLGIPVYVVPGNHD   69 (131)
T ss_pred             eeecccCCccchHHHHHHHHhc-ccCCCEEEECCcccCCCCCchHHHHHHHHHhhcCCCCEEEeCCCce
Confidence            6899999988887754  2222 2234569999999999998877666533333445688899999999

Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.96  E-value=6.6e-05  Score=70.22  Aligned_cols=106  Identities=23%  Similarity=0.233  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 014212           14 AEELKALANEAFRAK--KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA   91 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~   91 (429)
                      .-.....|.+.+..|  .+.+|.-.|++..+..+.++..+..+|.|++++|+|++|.+.+++++..+|.+++++.+++.+
T Consensus       165 ~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~  244 (290)
T PF04733_consen  165 ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVC  244 (290)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence            334444455555556  699999999998888888999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCH-HHHHHHHHHHHHhCCCCHHHH
Q 014212           92 YLAMGKF-KEALKDFQQVKKLSPNDPDAA  119 (429)
Q Consensus        92 ~~~~g~~-~eA~~~~~~al~~~p~~~~~~  119 (429)
                      ...+|+. +.+.+++.+.-..+|+++-..
T Consensus       245 ~~~~gk~~~~~~~~l~qL~~~~p~h~~~~  273 (290)
T PF04733_consen  245 SLHLGKPTEAAERYLSQLKQSNPNHPLVK  273 (290)
T ss_dssp             HHHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred             HHHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence            9999998 667778888888999988654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.95  E-value=1.6e-05  Score=48.24  Aligned_cols=32  Identities=31%  Similarity=0.433  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC
Q 014212           49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPR   80 (429)
Q Consensus        49 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   80 (429)
                      .+|+++|.++..+|++++|+.+|++|++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            45666677777777777777777777776665

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain

Probab=97.93  E-value=3.4e-05  Score=66.82  Aligned_cols=58  Identities=17%  Similarity=0.264  Sum_probs=41.1

Q ss_pred             eEEEccCC-CCHH-----HHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccc
Q 014212          224 FTVCGDVH-GQFY-----DLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK  294 (429)
Q Consensus       224 ~~v~GDih-G~~~-----~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~  294 (429)
                      +.|++|.| |.-.     .+.++++.    ..-+.++.+||+++     .+++.++..+.    ..++.++||||..
T Consensus         2 i~viSDtHl~~~~~~~~~~~~~~~~~----~~~d~iih~GDi~~-----~~~~~~l~~~~----~~~~~V~GN~D~~   65 (178)
T cd07394           2 VLVIGDLHIPHRASDLPAKFKKLLVP----GKIQHVLCTGNLCS-----KETYDYLKTIA----PDVHIVRGDFDEN   65 (178)
T ss_pred             EEEEEecCCCCCchhhHHHHHHHhcc----CCCCEEEECCCCCC-----HHHHHHHHhhC----CceEEEECCCCcc
Confidence            78999999 5433     35555543    22356999999987     77777775552    2588999999963

Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.93  E-value=0.0001  Score=66.71  Aligned_cols=133  Identities=19%  Similarity=0.236  Sum_probs=108.8

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHH----------Hh
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAI----------EI   77 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al----------~~   77 (429)
                      +.+|.+...+..+|.+|+...+|..|.++|++.-.+.|......+..+..+++.+.+..|+.......          ++
T Consensus        38 Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqL  117 (459)
T KOG4340|consen   38 ERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQL  117 (459)
T ss_pred             hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHH
Confidence            45676778888999999999999999999999999999988888888888888888877765443321          11


Q ss_pred             --------------------CC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHH
Q 014212           78 --------------------DP--RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFE  135 (429)
Q Consensus        78 --------------------~p--~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~  135 (429)
                                          -|  +.+....+.|.+.++.|++++|++-|+.|++...-++-.-++++.++...++  +.
T Consensus       118 qaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~q--ya  195 (459)
T KOG4340|consen  118 QAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQ--YA  195 (459)
T ss_pred             HHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhh--HH
Confidence                                13  3566788899999999999999999999999999999999999999988887  66


Q ss_pred             HhhcCCc
Q 014212          136 EAIAVPE  142 (429)
Q Consensus       136 ~a~~~~~  142 (429)
                      .|+.+..
T Consensus       196 sALk~iS  202 (459)
T KOG4340|consen  196 SALKHIS  202 (459)
T ss_pred             HHHHHHH
Confidence            6766543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.93  E-value=0.00024  Score=58.00  Aligned_cols=84  Identities=17%  Similarity=0.159  Sum_probs=72.9

Q ss_pred             CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHH
Q 014212           47 NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD---AAQ  120 (429)
Q Consensus        47 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~---~~~  120 (429)
                      .+..++.-|...++.|+|++|++.|+......|-.   ..+.+.++.+|+..+++++|+..+++-++++|.++.   +++
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            46778899999999999999999999999998864   578999999999999999999999999999999875   566


Q ss_pred             HHHHHHHHHH
Q 014212          121 KVKECEKAVK  130 (429)
Q Consensus       121 ~l~~~~~~~~  130 (429)
                      ..|.++....
T Consensus        89 ~~gL~~~~~~   98 (142)
T PF13512_consen   89 MRGLSYYEQD   98 (142)
T ss_pred             HHHHHHHHHh
Confidence            6666665544

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.92  E-value=2.9e-05  Score=47.00  Aligned_cols=33  Identities=33%  Similarity=0.780  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 014212           83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND  115 (429)
Q Consensus        83 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~  115 (429)
                      ++|+.+|.++..+|++++|+++|+++++++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            455556666666666666666666666665553

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.91  E-value=0.00027  Score=75.03  Aligned_cols=126  Identities=11%  Similarity=-0.007  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC---C---------
Q 014212           14 AEELKALANEAFRAKKYSQAIDLYSQAIEL--NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID---P---------   79 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p---------   79 (429)
                      ...|..+...|.+.|+.++|++.|++..+.  .|+ ...+..+..++...|+.++|.+.|+...+..   |         
T Consensus       391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li  469 (697)
T PLN03081        391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI  469 (697)
T ss_pred             eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence            445666666666666666666666665542  232 2233334444444444444444444443211   1         


Q ss_pred             ----------------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHh
Q 014212           80 ----------------------RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEA  137 (429)
Q Consensus        80 ----------------------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a  137 (429)
                                            .+...|..+..++...|+++.|...+++.+++.|++...+..+..++...|+  +++|
T Consensus       470 ~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~--~~~A  547 (697)
T PLN03081        470 ELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR--QAEA  547 (697)
T ss_pred             HHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCC--HHHH
Confidence                                  1345577777777778888888888888888888888888888888888887  6777


Q ss_pred             hcCCc
Q 014212          138 IAVPE  142 (429)
Q Consensus       138 ~~~~~  142 (429)
                      ...++
T Consensus       548 ~~v~~  552 (697)
T PLN03081        548 AKVVE  552 (697)
T ss_pred             HHHHH
Confidence            77655

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.89  E-value=2.7e-05  Score=71.86  Aligned_cols=141  Identities=13%  Similarity=0.129  Sum_probs=100.3

Q ss_pred             HHHHHhcCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH
Q 014212           22 NEAFRAKKYSQAIDLYSQAIELNSQNA-VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKE  100 (429)
Q Consensus        22 ~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e  100 (429)
                      ..+...++|..|+..++-.+..+.... ..-..+|.|++.+|+|++|+..|..+.+.+..+++.+.+||.++.-+|.|.+
T Consensus        30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e  109 (557)
T KOG3785|consen   30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE  109 (557)
T ss_pred             HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence            456778999999999988876654433 5667789999999999999999999999888889999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH----------------HHHHhhcCCccccccccccccccccccCCCCC
Q 014212          101 ALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL----------------KFEEAIAVPESERHSVADSIDYQSIEVEPQYS  164 (429)
Q Consensus       101 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~----------------~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~  164 (429)
                      |...-.+|    |++|--...+-.+.-.+++.                ....|-..|-+..+.+|..+|.+++.-+|++.
T Consensus       110 A~~~~~ka----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~  185 (557)
T KOG3785|consen  110 AKSIAEKA----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI  185 (557)
T ss_pred             HHHHHhhC----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence            98765554    44443222111111111111                12233334445566677777778888888887


Q ss_pred             CC
Q 014212          165 GA  166 (429)
Q Consensus       165 ~~  166 (429)
                      +.
T Consensus       186 al  187 (557)
T KOG3785|consen  186 AL  187 (557)
T ss_pred             hh
Confidence            65

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.84  E-value=7.4e-05  Score=69.26  Aligned_cols=176  Identities=16%  Similarity=0.143  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----
Q 014212           48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP-----KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD-----  117 (429)
Q Consensus        48 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~-----  117 (429)
                      ..++.+++..+.+..++.+++.+.+..+.+....+     .++..+|.++..++.++++++.|++|++...++.+     
T Consensus        83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl  162 (518)
T KOG1941|consen   83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL  162 (518)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee
Confidence            35678888888888888888888888887754333     56778999999999999999999999998755433     


Q ss_pred             -HHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCCcccCCCCCHHHHHHHHHHhhcccCCcHHHH
Q 014212          118 -AAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYA  196 (429)
Q Consensus       118 -~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~li~~l~~~~~l~~~~~  196 (429)
                       +...++.++.++++  +++|..+..            ++.++-..+....+... ...-.+..|.-.++..+.+.  ++
T Consensus       163 qvcv~Lgslf~~l~D--~~Kal~f~~------------kA~~lv~s~~l~d~~~k-yr~~~lyhmaValR~~G~Lg--dA  225 (518)
T KOG1941|consen  163 QVCVSLGSLFAQLKD--YEKALFFPC------------KAAELVNSYGLKDWSLK-YRAMSLYHMAVALRLLGRLG--DA  225 (518)
T ss_pred             ehhhhHHHHHHHHHh--hhHHhhhhH------------hHHHHHHhcCcCchhHH-HHHHHHHHHHHHHHHhcccc--cH
Confidence             45667777777777  777777766            55555444432222221 11112333444455555554  37


Q ss_pred             HHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHc
Q 014212          197 FQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELN  244 (429)
Q Consensus       197 ~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~  244 (429)
                      .+.|+++.++-....+-.-..    .-+.++||||....++.+.|...
T Consensus       226 ~e~C~Ea~klal~~Gdra~~a----rc~~~~aDIyR~~gd~e~af~rY  269 (518)
T KOG1941|consen  226 MECCEEAMKLALQHGDRALQA----RCLLCFADIYRSRGDLERAFRRY  269 (518)
T ss_pred             HHHHHHHHHHHHHhCChHHHH----HHHHHHHHHHHhcccHhHHHHHH
Confidence            889999988877655432111    12677899998888888877653

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.84  E-value=0.00019  Score=70.57  Aligned_cols=123  Identities=15%  Similarity=0.203  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 014212           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL   93 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   93 (429)
                      ...++.--+.+...++|++|++...+.+...|++..+....-.|+.+.++|++|+...++-......+ ...+..|.|.+
T Consensus        12 ~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Y   90 (652)
T KOG2376|consen   12 LEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEY   90 (652)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHH
Confidence            36777777888899999999999999999999999999988899999999999985443332222122 22268888999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        94 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      ++++.++|+..++   -+++.+..++...+.+...+++  |++|...|+
T Consensus        91 rlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~--ydealdiY~  134 (652)
T KOG2376|consen   91 RLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLER--YDEALDIYQ  134 (652)
T ss_pred             HcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhh--HHHHHHHHH
Confidence            9999999998888   4566667778888888888887  777777665

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.83  E-value=0.00032  Score=74.44  Aligned_cols=124  Identities=10%  Similarity=-0.033  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Q 014212           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-PRYPKGYYRRGAAY   92 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~   92 (429)
                      ...+..+...|.+.|++++|.+.|++.   .+.+...|..+...|.+.|++++|++.|++..+.. .-+...+..+..++
T Consensus       259 ~~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~  335 (697)
T PLN03081        259 TFVSCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF  335 (697)
T ss_pred             ceeHHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            344555666666677777776666653   23455666666666777777777777666665432 11344566666666


Q ss_pred             HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           93 LAMGKFKEALKDFQQVKKLS-PNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        93 ~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      .+.|++++|.+.+..+++.. +.+..++..+...+...|+  +++|...++
T Consensus       336 ~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~--~~~A~~vf~  384 (697)
T PLN03081        336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR--MEDARNVFD  384 (697)
T ss_pred             HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCC--HHHHHHHHH
Confidence            66666666666666666654 3344455555555555555  555555544

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.83  E-value=4.9e-05  Score=46.00  Aligned_cols=32  Identities=31%  Similarity=0.353  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC
Q 014212           49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPR   80 (429)
Q Consensus        49 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   80 (429)
                      .+|+.+|.+++.+|++++|+++|+++++++|+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            34555555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.80  E-value=0.00014  Score=68.10  Aligned_cols=107  Identities=23%  Similarity=0.207  Sum_probs=80.7

Q ss_pred             cHhHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-
Q 014212           10 SVSRAEELKALANEAFRA-KKYSQAIDLYSQAIELNS--QN----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-   81 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~-g~~~~A~~~~~~al~~~p--~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-   81 (429)
                      ....+..+..+|..|... |++++|+++|++|++...  +.    ...+..+|.++.++|+|++|++.|+++....-++ 
T Consensus       110 ~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~  189 (282)
T PF14938_consen  110 FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENN  189 (282)
T ss_dssp             HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHC
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccc
Confidence            344567888899999888 999999999999998622  11    3456788999999999999999999988753221 


Q ss_pred             ------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 014212           82 ------PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP  116 (429)
Q Consensus        82 ------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~  116 (429)
                            ...++..+.|+...|+...|...+++....+|...
T Consensus       190 l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~  230 (282)
T PF14938_consen  190 LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA  230 (282)
T ss_dssp             TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred             ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence                  13456778899999999999999999999988653

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=3.4e-05  Score=67.52  Aligned_cols=89  Identities=24%  Similarity=0.259  Sum_probs=79.9

Q ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212           52 ANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (429)
Q Consensus        52 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  131 (429)
                      ..-|..++...+|..|+.+|.+||.++|..+..|-+.|.+|.++.+++.+.....+|+++.|+...+++.++.+......
T Consensus        14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~   93 (284)
T KOG4642|consen   14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG   93 (284)
T ss_pred             HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence            34577788888999999999999999999999999999999999999999999999999999999999999999887776


Q ss_pred             HHHHHhhcCCc
Q 014212          132 LKFEEAIAVPE  142 (429)
Q Consensus       132 ~~~~~a~~~~~  142 (429)
                        |.+|+....
T Consensus        94 --~~eaI~~Lq  102 (284)
T KOG4642|consen   94 --YDEAIKVLQ  102 (284)
T ss_pred             --ccHHHHHHH
Confidence              666666544

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.80  E-value=0.00083  Score=56.07  Aligned_cols=97  Identities=26%  Similarity=0.278  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHhhCHHHHHHHHH
Q 014212           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQN----------------------AVYYANRAFAHTKLEEYGSAIQDAS   72 (429)
Q Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~lg~~~~~~g~~~~A~~~~~   72 (429)
                      ..+...|......++.+.+++.+++++.+...+                      ..+...++..+...|++++|+..++
T Consensus         7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~   86 (146)
T PF03704_consen    7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ   86 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            445566777788899999999999999863211                      2345667788889999999999999


Q ss_pred             HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014212           73 KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL  111 (429)
Q Consensus        73 ~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~  111 (429)
                      +++..+|-+-.+|..+-.+|..+|+..+|+..|+++.+.
T Consensus        87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988653

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional

Probab=97.79  E-value=6.8e-05  Score=68.46  Aligned_cols=69  Identities=17%  Similarity=0.242  Sum_probs=46.6

Q ss_pred             ceEEEccCCCCH------HHHHHHHHHcCCCCCCCCeEEccccccC-------CCCcHHHHHHHHHhhhhCCCeEEEecC
Q 014212          223 HFTVCGDVHGQF------YDLLNIFELNGLPSEENPYLFNGDFVDR-------GSFSVEVILTLFAFKCMCPSAIYLSRG  289 (429)
Q Consensus       223 ~~~v~GDihG~~------~~l~~~l~~~~~~~~~~~~~~lGD~vdr-------G~~s~e~~~~l~~lk~~~p~~~~~lrG  289 (429)
                      ++.+++|+|...      ..+.+.++...  ...+.++++||++|.       .+...+++.++..++. .+-.|++++|
T Consensus         2 ~i~~iSDlHl~~~~~~~~~~~~~~l~~~~--~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~-~g~~v~~v~G   78 (241)
T PRK05340          2 PTLFISDLHLSPERPAITAAFLRFLRGEA--RQADALYILGDLFEAWIGDDDPSPFAREIAAALKALSD-SGVPCYFMHG   78 (241)
T ss_pred             cEEEEeecCCCCCChhHHHHHHHHHHhhh--ccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHHH-cCCeEEEEeC
Confidence            478999999542      23445554322  234569999999985       2335677777777753 3357999999


Q ss_pred             Ccccc
Q 014212          290 NHESK  294 (429)
Q Consensus       290 Nhe~~  294 (429)
                      |||..
T Consensus        79 NHD~~   83 (241)
T PRK05340         79 NRDFL   83 (241)
T ss_pred             CCchh
Confidence            99974

>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain

Probab=97.78  E-value=2.1e-05  Score=67.41  Aligned_cols=68  Identities=19%  Similarity=0.114  Sum_probs=46.2

Q ss_pred             eEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccc
Q 014212          224 FTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK  294 (429)
Q Consensus       224 ~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~  294 (429)
                      +.+++|+|+........+...-.....+.+++.||+++++..+..+. ++..  ...+..+++++||||..
T Consensus         1 ~~~iSDlH~~~~~~~~~~~~~~~~~~~d~li~~GDi~~~~~~~~~~~-~~~~--~~~~~~v~~v~GNHD~~   68 (166)
T cd07404           1 IQYLSDLHLEFEDNLADLLNFPIAPDADILVLAGDIGYLTDAPRFAP-LLLA--LKGFEPVIYVPGNHEFY   68 (166)
T ss_pred             CceEccccccCccccccccccCCCCCCCEEEECCCCCCCcchHHHHH-HHHh--hcCCccEEEeCCCcceE
Confidence            35789999988766555422112234556999999999987765544 2222  23456799999999986

MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t

>PLN03077 Protein ECB2; Provisional

Probab=97.75  E-value=0.00074  Score=73.45  Aligned_cols=85  Identities=13%  Similarity=0.146  Sum_probs=38.0

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCC
Q 014212           20 LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--DPRYPKGYYRRGAAYLAMGK   97 (429)
Q Consensus        20 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~   97 (429)
                      +-..|.+.|+.++|...|++.    +.+...|..+...|.+.|+.++|++.|++..+.  .|+ ...+..+-.++...|+
T Consensus       530 Li~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~  604 (857)
T PLN03077        530 LLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGM  604 (857)
T ss_pred             HHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcCh
Confidence            334444455555554444443    233444444444455555555555555544432  222 2223333334444455


Q ss_pred             HHHHHHHHHHHH
Q 014212           98 FKEALKDFQQVK  109 (429)
Q Consensus        98 ~~eA~~~~~~al  109 (429)
                      +++|...|+...
T Consensus       605 v~ea~~~f~~M~  616 (857)
T PLN03077        605 VTQGLEYFHSME  616 (857)
T ss_pred             HHHHHHHHHHHH
Confidence            555555554444

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.73  E-value=0.00028  Score=69.41  Aligned_cols=120  Identities=15%  Similarity=0.180  Sum_probs=94.1

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-------------------
Q 014212           18 KALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-------------------   78 (429)
Q Consensus        18 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------------   78 (429)
                      +..|.++++.+..++|+..++   -.++.+..+....|.+++++++|++|+..|+..++-+                   
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l  159 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL  159 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence            688999999999999999988   4577777788899999999999999999999875322                   


Q ss_pred             --------C---C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCC--------HHHHHHHHHHHHHHHh
Q 014212           79 --------P---R-YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS-------PND--------PDAAQKVKECEKAVKK  131 (429)
Q Consensus        79 --------p---~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-------p~~--------~~~~~~l~~~~~~~~~  131 (429)
                              |   + ..+.+|+.|.++...|+|.+|++.+++|+++.       -.+        ..+...++.++..+|+
T Consensus       160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq  239 (652)
T KOG2376|consen  160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ  239 (652)
T ss_pred             hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence                    2   2 44678999999999999999999999995542       111        2256677778888887


Q ss_pred             HHHHHhhcCCc
Q 014212          132 LKFEEAIAVPE  142 (429)
Q Consensus       132 ~~~~~a~~~~~  142 (429)
                        -++|...|.
T Consensus       240 --t~ea~~iy~  248 (652)
T KOG2376|consen  240 --TAEASSIYV  248 (652)
T ss_pred             --hHHHHHHHH
Confidence              566666544

>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain

Probab=97.73  E-value=6.8e-05  Score=65.49  Aligned_cols=66  Identities=20%  Similarity=0.271  Sum_probs=44.9

Q ss_pred             eEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCc-HHHHHHHHHhhhhCCCeEEEecCCcccccc
Q 014212          224 FTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFS-VEVILTLFAFKCMCPSAIYLSRGNHESKSM  296 (429)
Q Consensus       224 ~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s-~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~  296 (429)
                      +.+++|+||.+..+..  ..... ...+.+|+.||++++|... .+.+..+.+    .+..++.++||||....
T Consensus         1 i~~~sD~H~~~~~~~~--~~~~~-~~~D~vv~~GDl~~~~~~~~~~~~~~l~~----~~~p~~~v~GNHD~~~~   67 (188)
T cd07392           1 ILAISDIHGDVEKLEA--IILKA-EEADAVIVAGDITNFGGKEAAVEINLLLA----IGVPVLAVPGNCDTPEI   67 (188)
T ss_pred             CEEEEecCCCHHHHHH--HHhhc-cCCCEEEECCCccCcCCHHHHHHHHHHHh----cCCCEEEEcCCCCCHHH
Confidence            4678999999988876  22221 2345699999999999763 333333332    24568999999997643

PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.71  E-value=0.00093  Score=58.75  Aligned_cols=131  Identities=29%  Similarity=0.368  Sum_probs=94.2

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHhhCHHHHHHHHHHHHHhCC---CChHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAF-AHTKLEEYGSAIQDASKAIEIDP---RYPKGY   85 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~   85 (429)
                      .+.....+...+..+...+++..|+..+.+++...+.+.......+. ++...|+++.|...+.+++...|   .....+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  170 (291)
T COG0457          91 LPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEAL  170 (291)
T ss_pred             ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHH
Confidence            45556677777888888888888888888888877776555555555 78888888888888888877666   355566


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           86 YRRGAAYLAMGKFKEALKDFQQVKKLSPN-DPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        86 ~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      ..++..+...+++++|+..+.+++...+. .......++..+...+.  +..|+..+.
T Consensus       171 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~~~~~  226 (291)
T COG0457         171 LALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK--YEEALEYYE  226 (291)
T ss_pred             HHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc--HHHHHHHHH
Confidence            66666777788888888888888888888 57777777777666553  344444433

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.71  E-value=0.00013  Score=70.07  Aligned_cols=121  Identities=18%  Similarity=0.227  Sum_probs=101.2

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHH------
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQA-IELNSQ--------NAVYYANRAFAHTKLEEYGSAIQDASKAIE------   76 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------   76 (429)
                      +.+.++...++.++..|+|.+|.+.+... +...|.        ..-+|.++|.++++++.|..+...|.+|++      
T Consensus       238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL  317 (696)
T KOG2471|consen  238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL  317 (696)
T ss_pred             CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence            56778889999999999999999887653 222333        344678999999999999999999999996      


Q ss_pred             ---hCC---------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Q 014212           77 ---IDP---------RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL  132 (429)
Q Consensus        77 ---~~p---------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  132 (429)
                         +.|         ..-+..|+.|..|...|+.-.|.++|.++......+|..|..++++.....+.
T Consensus       318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~  385 (696)
T KOG2471|consen  318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQK  385 (696)
T ss_pred             hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhh
Confidence               112         23568999999999999999999999999999999999999999998776543

>PLN03077 Protein ECB2; Provisional

Probab=97.67  E-value=0.0011  Score=72.06  Aligned_cols=126  Identities=14%  Similarity=0.052  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC--ChHHHHHH
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIEL--NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--YPKGYYRR   88 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l   88 (429)
                      +...|..+...|.+.|+.++|++.|++..+.  .|+... +..+-.++.+.|++++|.+.|+...+..+-  +...|..+
T Consensus       553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T-~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l  631 (857)
T PLN03077        553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT-FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV  631 (857)
T ss_pred             ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc-HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence            4556666666666666666666666665542  344332 333334455555555555555555432211  22334444


Q ss_pred             HHHH--------------------------------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHH
Q 014212           89 GAAY--------------------------------LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEE  136 (429)
Q Consensus        89 a~~~--------------------------------~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  136 (429)
                      ..++                                ...++.+.|....+++++++|+++..+..++.++...|+  +++
T Consensus       632 v~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~--~~~  709 (857)
T PLN03077        632 VDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGK--WDE  709 (857)
T ss_pred             HHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCC--hHH
Confidence            4444                                444555555555556677778888888888888877777  555


Q ss_pred             hhcCC
Q 014212          137 AIAVP  141 (429)
Q Consensus       137 a~~~~  141 (429)
                      |....
T Consensus       710 a~~vr  714 (857)
T PLN03077        710 VARVR  714 (857)
T ss_pred             HHHHH
Confidence            55543

>PRK11340 phosphodiesterase YaeI; Provisional

Probab=97.66  E-value=0.00012  Score=67.96  Aligned_cols=71  Identities=15%  Similarity=0.106  Sum_probs=49.1

Q ss_pred             CCceEEEccCCCC----HHHHHHHHHHcCCCCCCCCeEEccccccCC--CCcHHHHHHHHHhhhhCCCeEEEecCCcccc
Q 014212          221 GKHFTVCGDVHGQ----FYDLLNIFELNGLPSEENPYLFNGDFVDRG--SFSVEVILTLFAFKCMCPSAIYLSRGNHESK  294 (429)
Q Consensus       221 ~~~~~v~GDihG~----~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG--~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~  294 (429)
                      +.++..++|+|..    ...+.++++..... ..+-+++.||++|.+  ....++...+..|+...  .++.+.||||..
T Consensus        49 ~~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~-~pDlVli~GD~~d~~~~~~~~~~~~~L~~L~~~~--pv~~V~GNHD~~  125 (271)
T PRK11340         49 PFKILFLADLHYSRFVPLSLISDAIALGIEQ-KPDLILLGGDYVLFDMPLNFSAFSDVLSPLAECA--PTFACFGNHDRP  125 (271)
T ss_pred             CcEEEEEcccCCCCcCCHHHHHHHHHHHHhc-CCCEEEEccCcCCCCccccHHHHHHHHHHHhhcC--CEEEecCCCCcc
Confidence            3568999999976    45566666654322 335689999999954  33345666777776533  499999999964

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.66  E-value=0.0028  Score=69.44  Aligned_cols=97  Identities=14%  Similarity=0.091  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-CCChHHHHHH
Q 014212           14 AEELKALANEAFRAKKYSQAIDLYSQAIEL----NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-PRYPKGYYRR   88 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l   88 (429)
                      ...+..+...+.+.|++++|.+.+.+..+.    .|+ ...|..+..+|.+.|++++|.+.|+...+.+ +.+...|..+
T Consensus       542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsL  620 (1060)
T PLN03218        542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA  620 (1060)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHH
Confidence            344555555555666666666666555432    232 3444555555555566666666555555544 2344455555


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHh
Q 014212           89 GAAYLAMGKFKEALKDFQQVKKL  111 (429)
Q Consensus        89 a~~~~~~g~~~eA~~~~~~al~~  111 (429)
                      ...|.+.|++++|+..|.+..+.
T Consensus       621 I~ay~k~G~~deAl~lf~eM~~~  643 (1060)
T PLN03218        621 VNSCSQKGDWDFALSIYDDMKKK  643 (1060)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHc
Confidence            55555555555555555555543

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=0.0033  Score=57.36  Aligned_cols=117  Identities=19%  Similarity=0.146  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHH--------------------
Q 014212           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK--------------------   73 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~--------------------   73 (429)
                      .+.-+..+......|++.+|...+..++...|.+..+...++.||...|+.+.|...+..                    
T Consensus       134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll  213 (304)
T COG3118         134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL  213 (304)
T ss_pred             HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence            344566777889999999999999999999999999999999999999999877544333                    


Q ss_pred             --------------HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHH
Q 014212           74 --------------AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP--NDPDAAQKVKECEKAVK  130 (429)
Q Consensus        74 --------------al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~~l~~~~~~~~  130 (429)
                                    .+..+|++.++-+.+|..+...|+.++|.+.+-..++.+-  ++..+...+-.+...++
T Consensus       214 ~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         214 EQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             HHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence                          2344788999999999999999999999999988888754  34556666666665555

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.60  E-value=0.00025  Score=65.89  Aligned_cols=126  Identities=15%  Similarity=0.201  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC----C---
Q 014212           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR----Y---   81 (429)
Q Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~---   81 (429)
                      +++..+|+++...+.|++++++|++|++...++      ..++..+|..+.++.|+++|+.+..+|.++-..    +   
T Consensus       123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~  202 (518)
T KOG1941|consen  123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL  202 (518)
T ss_pred             hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence            566779999999999999999999999874432      356889999999999999999999999887432    2   


Q ss_pred             ---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           82 ---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLS------PNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        82 ---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                         .-+.+.++.++..+|+..+|.++++.|.++.      |-......-++.+|+..++  .+.|+..|+
T Consensus       203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd--~e~af~rYe  270 (518)
T KOG1941|consen  203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGD--LERAFRRYE  270 (518)
T ss_pred             HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhccc--HhHHHHHHH
Confidence               2357889999999999999999999998874      2234455667777777776  555666555

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.59  E-value=3.9e-05  Score=72.16  Aligned_cols=129  Identities=16%  Similarity=0.235  Sum_probs=97.0

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC----C-
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP----R-   80 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----~-   80 (429)
                      ..-.++-++|+.|+-.|+|++|+..-+.-+++...      .-.++.++|.|+.-+|+++.|+++|++++.+.-    . 
T Consensus       193 aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~  272 (639)
T KOG1130|consen  193 AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRT  272 (639)
T ss_pred             hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchh
Confidence            34456778888999999999999887776665433      246788999999999999999999998776532    2 


Q ss_pred             -ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           81 -YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN------DPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        81 -~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                       -+...|.||..|.-..++.+|+.++++-+.+..+      ...+.+.++..+..++.  -++|+.+.+
T Consensus       273 vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~--h~kAl~fae  339 (639)
T KOG1130|consen  273 VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGE--HRKALYFAE  339 (639)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh--HHHHHHHHH
Confidence             3456788999999999999999999998877543      23466677777777776  455555444

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=97.58  E-value=0.00027  Score=68.64  Aligned_cols=108  Identities=25%  Similarity=0.277  Sum_probs=98.2

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---hCHHHHHHHHHHHHHhCCCChHHH
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL---EEYGSAIQDASKAIEIDPRYPKGY   85 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~   85 (429)
                      +-|+.++.....|+..+..+.+..|+..|.++++..|.....+.+++.++++.   |+.-.|+..+..|++++|....+|
T Consensus       369 eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah  448 (758)
T KOG1310|consen  369 ELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAH  448 (758)
T ss_pred             hchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHH
Confidence            45778888889999999999999999999999999999999999999999886   577899999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 014212           86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDP  116 (429)
Q Consensus        86 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~  116 (429)
                      +.|+.++..++++.+|+++...+....|.+.
T Consensus       449 ~~la~aL~el~r~~eal~~~~alq~~~Ptd~  479 (758)
T KOG1310|consen  449 FRLARALNELTRYLEALSCHWALQMSFPTDV  479 (758)
T ss_pred             HHHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence            9999999999999999999887777777554

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.58  E-value=0.00027  Score=66.71  Aligned_cols=120  Identities=18%  Similarity=0.177  Sum_probs=93.9

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC------
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELN------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP------   79 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------   79 (429)
                      ..-.++.++|+++.-.|+++.|+++|++++.+.      ...+...+.+|..|.-+.++++|++++++-+.+..      
T Consensus       233 aeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~Dri  312 (639)
T KOG1130|consen  233 AERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRI  312 (639)
T ss_pred             HHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            344678899999999999999999999987642      22466788999999999999999999999776642      


Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC-CHHHHHHHHHHHHHHHh
Q 014212           80 RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS-----PN-DPDAAQKVKECEKAVKK  131 (429)
Q Consensus        80 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-----p~-~~~~~~~l~~~~~~~~~  131 (429)
                      ....+++.||.+|..+|..++|+.+.++.++..     |. ...+..++......+|.
T Consensus       313 Ge~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~  370 (639)
T KOG1130|consen  313 GELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQ  370 (639)
T ss_pred             hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCC
Confidence            246789999999999999999999988888764     22 22345555555555554

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.57  E-value=3.1e-05  Score=74.53  Aligned_cols=118  Identities=17%  Similarity=0.091  Sum_probs=103.7

Q ss_pred             CcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHH
Q 014212          191 LHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVI  270 (429)
Q Consensus       191 l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~  270 (429)
                      +....+..++..+.+++..+|+...+........+.++|.||++.|+.++++..  |.....|++-|++++++.+..+.+
T Consensus        15 l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~~~A~   92 (476)
T KOG0376|consen   15 LKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEFKKAL   92 (476)
T ss_pred             cccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHHHHHH
Confidence            445668889999999999999988777666667899999999999999999864  445567999999999999999999


Q ss_pred             HHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhccc
Q 014212          271 LTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKL  310 (429)
Q Consensus       271 ~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~  310 (429)
                      ..+...+...|+...+.|++||+-.+...++|..+....+
T Consensus        93 ~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~~~  132 (476)
T KOG0376|consen   93 LDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAILTPE  132 (476)
T ss_pred             HHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccCCc
Confidence            9999999999999999999999999999999987776666

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.55  E-value=0.0013  Score=67.92  Aligned_cols=110  Identities=10%  Similarity=0.105  Sum_probs=93.6

Q ss_pred             HHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH
Q 014212           22 NEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEA  101 (429)
Q Consensus        22 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA  101 (429)
                      ......++|.+|+....+.++..|+...+...-|..+.++|+.++|..+++..-...+++-..+--+-.+|..++++++|
T Consensus        17 ~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~   96 (932)
T KOG2053|consen   17 YDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA   96 (932)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence            44567789999999999999999999999999999999999999999887777777778888888889999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Q 014212          102 LKDFQQVKKLSPNDPDAAQKVKECEKAVKKL  132 (429)
Q Consensus       102 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  132 (429)
                      ...|++++..+|+ .+....+-.++.+.+.+
T Consensus        97 ~~~Ye~~~~~~P~-eell~~lFmayvR~~~y  126 (932)
T KOG2053|consen   97 VHLYERANQKYPS-EELLYHLFMAYVREKSY  126 (932)
T ss_pred             HHHHHHHHhhCCc-HHHHHHHHHHHHHHHHH
Confidence            9999999999999 66666666666555554

>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain

Probab=97.54  E-value=0.00017  Score=64.90  Aligned_cols=70  Identities=23%  Similarity=0.290  Sum_probs=48.9

Q ss_pred             ceEEEccCCCCHH----HHHHHHHHcCCCCCCCCeEEccccccCCCCcH-HHHHHHHHhhhhCCCeEEEecCCccccc
Q 014212          223 HFTVCGDVHGQFY----DLLNIFELNGLPSEENPYLFNGDFVDRGSFSV-EVILTLFAFKCMCPSAIYLSRGNHESKS  295 (429)
Q Consensus       223 ~~~v~GDihG~~~----~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~-e~~~~l~~lk~~~p~~~~~lrGNhe~~~  295 (429)
                      ++.+++|+|....    .+.++++..... ..+.+++.||++|.+.... .+..++..+.  .+..++++.||||...
T Consensus         3 ~i~~~sDlH~~~~~~~~~~~~~~~~~~~~-~~d~vl~~GD~~~~~~~~~~~~~~~l~~l~--~~~~v~~v~GNHD~~~   77 (223)
T cd07385           3 RIAHLSDLHLGPFVSRERLERLVEKINAL-KPDLVVLTGDLVDGSVDVLELLLELLKKLK--APLGVYAVLGNHDYYS   77 (223)
T ss_pred             EEEEEeecCCCccCCHHHHHHHHHHHhcc-CCCEEEEcCcccCCcchhhHHHHHHHhccC--CCCCEEEECCCccccc
Confidence            5889999998643    556666554322 2346889999999988765 5555555443  3456899999999754

YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia

>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain

Probab=97.51  E-value=0.00027  Score=60.62  Aligned_cols=42  Identities=26%  Similarity=0.312  Sum_probs=31.1

Q ss_pred             CCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccc
Q 014212          250 ENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSM  296 (429)
Q Consensus       250 ~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~  296 (429)
                      .+.++++||++++|..+.. +..+..+    +..+++++||||....
T Consensus        43 ~d~vi~~GDl~~~~~~~~~-~~~l~~~----~~~~~~v~GNHD~~~~   84 (168)
T cd07390          43 DDTVYHLGDFSFGGKAGTE-LELLSRL----NGRKHLIKGNHDSSLE   84 (168)
T ss_pred             CCEEEEeCCCCCCCChHHH-HHHHHhC----CCCeEEEeCCCCchhh
Confidence            4679999999999986644 4444333    4568999999997644

This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.49  E-value=0.0052  Score=58.04  Aligned_cols=127  Identities=16%  Similarity=0.138  Sum_probs=109.7

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC-ChHHHHHHHH
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR-YPKGYYRRGA   90 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~   90 (429)
                      ..+......|..-+..|+|.+|.....++-+..+....++..-+.+--++||++.|-.++.++-+..++ ...+...++.
T Consensus        82 rra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrar  161 (400)
T COG3071          82 RRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRAR  161 (400)
T ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence            345566677888888999999999999998888888888888899999999999999999999998443 4567788899


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcC
Q 014212           91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAV  140 (429)
Q Consensus        91 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  140 (429)
                      +...+|+++.|.....++++..|.+++++.....++...|.  +.....+
T Consensus       162 lll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~--~~~ll~~  209 (400)
T COG3071         162 LLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGA--WQALLAI  209 (400)
T ss_pred             HHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhcc--HHHHHHH
Confidence            99999999999999999999999999999999999999887  4444433

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.49  E-value=0.0023  Score=60.35  Aligned_cols=117  Identities=15%  Similarity=0.127  Sum_probs=97.7

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA   91 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~   91 (429)
                      .++......+..+...|++++|.+..+.+++..-+.. ....++  ..+.++...-++..++.+...|+++..+..||..
T Consensus       261 ~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L  337 (400)
T COG3071         261 NDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRL  337 (400)
T ss_pred             cChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence            3466777888999999999999999999999765544 333333  3467888999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Q 014212           92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL  132 (429)
Q Consensus        92 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  132 (429)
                      +.+.+.+.+|..+|+.|++..|+. ..+..++.++.++++.
T Consensus       338 ~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~  377 (400)
T COG3071         338 ALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEP  377 (400)
T ss_pred             HHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCCh
Confidence            999999999999999999998875 4467788888888773

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.46  E-value=0.00099  Score=60.46  Aligned_cols=86  Identities=14%  Similarity=0.204  Sum_probs=79.0

Q ss_pred             HHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Q 014212           23 EAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL  102 (429)
Q Consensus        23 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~  102 (429)
                      .+.+..+|++|++.+.--.+.+|.+...+..+|.||+...+|..|.+||++.-.+.|......+..|..+++.+.+.+|+
T Consensus        19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL   98 (459)
T KOG4340|consen   19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL   98 (459)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 014212          103 KDFQQV  108 (429)
Q Consensus       103 ~~~~~a  108 (429)
                      ......
T Consensus        99 rV~~~~  104 (459)
T KOG4340|consen   99 RVAFLL  104 (459)
T ss_pred             HHHHHh
Confidence            765543

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.45  E-value=0.0029  Score=69.34  Aligned_cols=127  Identities=14%  Similarity=0.120  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh----CCCChHHHHH
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELN-SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI----DPRYPKGYYR   87 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~   87 (429)
                      +...|..+...|.+.|++++|++.|++..+.. ..+...|..+..++.+.|++++|.+.+.+....    .| +...|..
T Consensus       506 dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTyna  584 (1060)
T PLN03218        506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGA  584 (1060)
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHH
Confidence            34556666666777777777777777665432 123556666777777777777777777776542    33 3456666


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           88 RGAAYLAMGKFKEALKDFQQVKKLS-PNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        88 la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      +-.+|.+.|++++|.+.|++..+.+ +.+...+..+...+...++  +++|+.++.
T Consensus       585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~--~deAl~lf~  638 (1060)
T PLN03218        585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD--WDFALSIYD  638 (1060)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC--HHHHHHHHH
Confidence            6677777777777777777777665 3345556666666666555  556665554

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.44  E-value=0.00027  Score=42.68  Aligned_cols=32  Identities=34%  Similarity=0.774  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 014212           83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN  114 (429)
Q Consensus        83 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~  114 (429)
                      ++|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            34555555555566666666666655555553

...

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.43  E-value=0.0077  Score=47.08  Aligned_cols=93  Identities=23%  Similarity=0.326  Sum_probs=71.7

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-------CC
Q 014212           19 ALANEAFRAKKYSQAIDLYSQAIELNSQ------------NAVYYANRAFAHTKLEEYGSAIQDASKAIEI-------DP   79 (429)
Q Consensus        19 ~~a~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p   79 (429)
                      ..|..-+..|-|++|...+++|++..-.            ++..+-.|+.++..+|+|++++....+++..       +.
T Consensus        14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~q   93 (144)
T PF12968_consen   14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQ   93 (144)
T ss_dssp             HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTS
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccc
Confidence            3455667789999999999999986422            3455677889999999999999888888753       44


Q ss_pred             CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014212           80 RY----PKGYYRRGAAYLAMGKFKEALKDFQQVKKL  111 (429)
Q Consensus        80 ~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~  111 (429)
                      +.    ..+-++.|.++..+|+.++|+..|+++-++
T Consensus        94 deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   94 DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            43    345688999999999999999999998775

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.38  E-value=0.0014  Score=43.90  Aligned_cols=48  Identities=13%  Similarity=0.266  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014212           83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK  130 (429)
Q Consensus        83 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~  130 (429)
                      +.+|.+|..++++|+|++|..+.+.+++.+|+|..+......+...+.
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~   49 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQ   49 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Confidence            467889999999999999999999999999999998877766654443

>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain

Probab=97.37  E-value=0.00048  Score=56.23  Aligned_cols=55  Identities=22%  Similarity=0.203  Sum_probs=38.4

Q ss_pred             EEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcc
Q 014212          226 VCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHE  292 (429)
Q Consensus       226 v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe  292 (429)
                      |++|.||..+.+.++....   ...+.++++||+.      .+++..+..++   +..++.++||||
T Consensus         2 viSDtH~~~~~~~~~~~~~---~~~d~ii~~GD~~------~~~~~~~~~~~---~~~~~~V~GN~D   56 (129)
T cd07403           2 VISDTESPALYSPEIKVRL---EGVDLILSAGDLP------KEYLEYLVTML---NVPVYYVHGNHD   56 (129)
T ss_pred             eeccccCccccchHHHhhC---CCCCEEEECCCCC------hHHHHHHHHHc---CCCEEEEeCCCc
Confidence            6899999977777766642   2345699999973      34555555541   234788999999

TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.35  E-value=0.0011  Score=59.09  Aligned_cols=107  Identities=18%  Similarity=0.294  Sum_probs=94.3

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELN------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK   83 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~   83 (429)
                      .|.++.....+|...++.||-+.|..+++++-+.+      ........+.+.++...+++.+|...+.+.+..||.++.
T Consensus       208 ~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~  287 (366)
T KOG2796|consen  208 PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV  287 (366)
T ss_pred             CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh
Confidence            46777888999999999999999999999665432      224556778888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 014212           84 GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP  116 (429)
Q Consensus        84 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~  116 (429)
                      +-.+.|.|..-+|+..+|++..+.++...|...
T Consensus       288 a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  288 ANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             hhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            999999999999999999999999999999753

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.35  E-value=0.0004  Score=41.93  Aligned_cols=31  Identities=29%  Similarity=0.414  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC
Q 014212           49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDP   79 (429)
Q Consensus        49 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p   79 (429)
                      .+|+.+|.++..+|++++|+.+|+++++++|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            3455566666666666666666666666555

...

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.34  E-value=0.00095  Score=60.78  Aligned_cols=85  Identities=20%  Similarity=0.175  Sum_probs=72.8

Q ss_pred             CcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 014212            7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY   86 (429)
Q Consensus         7 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   86 (429)
                      .......+..-...|....+.|+.++|...|+.|+++.|+++.++..+|......++.-+|-++|-+|+.++|.+.+++.
T Consensus       109 ~pa~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv  188 (472)
T KOG3824|consen  109 DPAKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV  188 (472)
T ss_pred             CchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence            33444556666777888889999999999999999999999999999999998889999999999999999999999988


Q ss_pred             HHHHH
Q 014212           87 RRGAA   91 (429)
Q Consensus        87 ~la~~   91 (429)
                      +.+..
T Consensus       189 nR~RT  193 (472)
T KOG3824|consen  189 NRART  193 (472)
T ss_pred             hhhcc
Confidence            87643

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.34  E-value=0.0094  Score=52.46  Aligned_cols=101  Identities=27%  Similarity=0.249  Sum_probs=55.0

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----C-C-CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh--
Q 014212           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELN----S-Q-NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP--   82 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----p-~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--   82 (429)
                      .+.++.+..-|+.|--.++|..|=..|.++.+..    . . -+..|...+.||.+. +.++|++++++++++..+-.  
T Consensus        31 eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf  109 (288)
T KOG1586|consen   31 EEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRF  109 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHH
Confidence            3444555555666666666666666666665431    1 1 133444444444333 66666666666666654432  


Q ss_pred             ----HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC
Q 014212           83 ----KGYYRRGAAYLAM-GKFKEALKDFQQVKKLS  112 (429)
Q Consensus        83 ----~~~~~la~~~~~~-g~~~eA~~~~~~al~~~  112 (429)
                          ..+..+|.+|..- .++++|+.+|++|-+..
T Consensus       110 ~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~y  144 (288)
T KOG1586|consen  110 TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYY  144 (288)
T ss_pred             HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence                2234566666543 66666666666666543

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.31  E-value=0.0072  Score=52.94  Aligned_cols=128  Identities=24%  Similarity=0.302  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIE--LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA   90 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~   90 (429)
                      ........+..+...+++..+...+..++.  ..+.....+...+..+...+++..|+..+.+++...+.........+.
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (291)
T COG0457          58 LAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLAL  137 (291)
T ss_pred             chHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHH
Confidence            356778888999999999999999999997  788889999999999999999999999999999988887666666777


Q ss_pred             -HHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           91 -AYLAMGKFKEALKDFQQVKKLSPN---DPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        91 -~~~~~g~~~eA~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                       ++...|++++|...+.+++...|.   ........+..+...++  +..++..+.
T Consensus       138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~~~~~  191 (291)
T COG0457         138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGR--YEEALELLE  191 (291)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcC--HHHHHHHHH
Confidence             899999999999999999887773   33334344333223333  444444443

>TIGR03729 acc_ester putative phosphoesterase

Probab=97.30  E-value=0.00053  Score=62.51  Aligned_cols=67  Identities=16%  Similarity=0.147  Sum_probs=46.1

Q ss_pred             eEEEccCCCCH------HHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccc
Q 014212          224 FTVCGDVHGQF------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK  294 (429)
Q Consensus       224 ~~v~GDihG~~------~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~  294 (429)
                      +.++.|+|..+      ..+.++++..... ..+.+++.||+++.++.+.+++..+.++   .+..++++.||||..
T Consensus         2 i~~iSDlH~~~~~~~~~~~l~~~~~~~~~~-~~d~vv~~GDl~~~~~~~~~~~~~l~~~---~~~pv~~v~GNHD~~   74 (239)
T TIGR03729         2 IAFSSDLHIDLNHFDTEEMLETLAQYLKKQ-KIDHLHIAGDISNDFQRSLPFIEKLQEL---KGIKVTFNAGNHDML   74 (239)
T ss_pred             EEEEEeecCCCCCCCHHHHHHHHHHHHHhc-CCCEEEECCccccchhhHHHHHHHHHHh---cCCcEEEECCCCCCC
Confidence            67889999653      2244455544322 2456999999999877677766666553   345689999999964

Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.30  E-value=0.0044  Score=52.58  Aligned_cols=102  Identities=19%  Similarity=0.163  Sum_probs=87.5

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ--NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY   85 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~   85 (429)
                      ..-..++..+..+|+..+..+++..|...+++..+.+|.  .+.....+|.++..+|++.+|...|+.++...|+ +.+.
T Consensus       118 G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar  196 (251)
T COG4700         118 GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQAR  196 (251)
T ss_pred             cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHH
Confidence            334456778899999999999999999999999999887  4677788999999999999999999999999885 6778


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Q 014212           86 YRRGAAYLAMGKFKEALKDFQQVKK  110 (429)
Q Consensus        86 ~~la~~~~~~g~~~eA~~~~~~al~  110 (429)
                      ...+..+.++|+.++|..-+....+
T Consensus       197 ~~Y~e~La~qgr~~ea~aq~~~v~d  221 (251)
T COG4700         197 IYYAEMLAKQGRLREANAQYVAVVD  221 (251)
T ss_pred             HHHHHHHHHhcchhHHHHHHHHHHH
Confidence            8899999999999888776655443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.26  E-value=0.0058  Score=59.01  Aligned_cols=128  Identities=16%  Similarity=0.148  Sum_probs=108.7

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA   91 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~   91 (429)
                      -+...|...|.--..++++..|...+++||..+..+...|...+.+-++.+....|.+.+.+|+.+-|.--..|+..-..
T Consensus        71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ym  150 (677)
T KOG1915|consen   71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYM  150 (677)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            34566777888888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        92 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      -..+|+..-|.+.|++-++..|+... |...-.  ..+...+.+.|...|+
T Consensus       151 EE~LgNi~gaRqiferW~~w~P~eqa-W~sfI~--fElRykeieraR~IYe  198 (677)
T KOG1915|consen  151 EEMLGNIAGARQIFERWMEWEPDEQA-WLSFIK--FELRYKEIERARSIYE  198 (677)
T ss_pred             HHHhcccHHHHHHHHHHHcCCCcHHH-HHHHHH--HHHHhhHHHHHHHHHH
Confidence            99999999999999999999998643 333322  2333334666666666

>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain

Probab=97.26  E-value=0.0011  Score=57.16  Aligned_cols=47  Identities=17%  Similarity=0.111  Sum_probs=28.8

Q ss_pred             CCCeEEccccccCCCCcH-HHHHHH-HHhhhhCCCeEEEecCCcccccc
Q 014212          250 ENPYLFNGDFVDRGSFSV-EVILTL-FAFKCMCPSAIYLSRGNHESKSM  296 (429)
Q Consensus       250 ~~~~~~lGD~vdrG~~s~-e~~~~l-~~lk~~~p~~~~~lrGNhe~~~~  296 (429)
                      .+.+|++||+++....+. +....+ .......+..+++++||||....
T Consensus        42 ~d~lii~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~GNHD~~~~   90 (172)
T cd07391          42 PERLIILGDLKHSFGGLSRQEFEEVAFLRLLAKDVDVILIRGNHDGGLP   90 (172)
T ss_pred             CCEEEEeCcccccccccCHHHHHHHHHHHhccCCCeEEEEcccCccchh
Confidence            346999999998654332 222111 11122345689999999997543

This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.23  E-value=0.0027  Score=59.25  Aligned_cols=116  Identities=12%  Similarity=0.047  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 014212           16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK-LEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA   94 (429)
Q Consensus        16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   94 (429)
                      +|..+.+...+.+..+.|...|.+|.+..+....+|...|..-+. .++.+.|.+.|+++++..|.+...|......+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            466667777778889999999999986666678889999988666 5677779999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHh
Q 014212           95 MGKFKEALKDFQQVKKLSPNDP---DAAQKVKECEKAVKK  131 (429)
Q Consensus        95 ~g~~~eA~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~  131 (429)
                      .++.+.|...|++++..-|...   .+|..........|+
T Consensus        83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd  122 (280)
T PF05843_consen   83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGD  122 (280)
T ss_dssp             TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-
T ss_pred             hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC
Confidence            9999999999999998877655   355555555545554

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.21  E-value=0.0056  Score=52.44  Aligned_cols=101  Identities=17%  Similarity=0.133  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-hHHHHHHH
Q 014212           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-PKGYYRRG   89 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la   89 (429)
                      ..+...+|..+...+++++|+..++.++....+.   +-+-.++|.+..++|++++|+..+.....  +.. +..-...|
T Consensus        89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrG  166 (207)
T COG2976          89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRG  166 (207)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhh
Confidence            3456788999999999999999999998644332   44567899999999999999998765432  222 23345679


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 014212           90 AAYLAMGKFKEALKDFQQVKKLSPNDP  116 (429)
Q Consensus        90 ~~~~~~g~~~eA~~~~~~al~~~p~~~  116 (429)
                      .++...|+-++|...|++++...++.+
T Consensus       167 Dill~kg~k~~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         167 DILLAKGDKQEARAAYEKALESDASPA  193 (207)
T ss_pred             hHHHHcCchHHHHHHHHHHHHccCChH
Confidence            999999999999999999999885543

>PRK10941 hypothetical protein; Provisional

Probab=97.20  E-value=0.0053  Score=56.48  Aligned_cols=78  Identities=18%  Similarity=0.212  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014212           49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE  126 (429)
Q Consensus        49 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~  126 (429)
                      ....++=.+|.+.++++.|+.+.+..+.+.|+++.-+.-.|.+|.++|.+..|...++..++..|+++.+......+.
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~  259 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH  259 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence            345677888999999999999999999999999999999999999999999999999999999999999876665544

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.15  E-value=0.0016  Score=57.48  Aligned_cols=102  Identities=17%  Similarity=0.157  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CCC----------ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014212           48 AVYYANRAFAHTKLEEYGSAIQDASKAIEI--------DPR----------YPKGYYRRGAAYLAMGKFKEALKDFQQVK  109 (429)
Q Consensus        48 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~----------~~~~~~~la~~~~~~g~~~eA~~~~~~al  109 (429)
                      ..++...|+-++..|+|.+|...|+.|+..        .|.          ....+.+.++|+...|+|-++++.....+
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            356778899999999999999999999743        243          33578999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212          110 KLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY  163 (429)
Q Consensus       110 ~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~  163 (429)
                      ..+|.+..|++..+.++...=+              ..+|..-+.++++++|.-
T Consensus       258 ~~~~~nvKA~frRakAhaa~Wn--------------~~eA~~D~~~vL~ldpsl  297 (329)
T KOG0545|consen  258 RHHPGNVKAYFRRAKAHAAVWN--------------EAEAKADLQKVLELDPSL  297 (329)
T ss_pred             hcCCchHHHHHHHHHHHHhhcC--------------HHHHHHHHHHHHhcChhh
Confidence            9999999999998887654322              223444445777777754

>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain

Probab=97.11  E-value=0.0016  Score=60.51  Aligned_cols=73  Identities=18%  Similarity=0.165  Sum_probs=46.2

Q ss_pred             ceEEEccCC-C------------CHHHHHHHHHHcCCCCCCCCeEEccccccCCCC-cHHHHHHHHHhhhhCCCeEEEec
Q 014212          223 HFTVCGDVH-G------------QFYDLLNIFELNGLPSEENPYLFNGDFVDRGSF-SVEVILTLFAFKCMCPSAIYLSR  288 (429)
Q Consensus       223 ~~~v~GDih-G------------~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~-s~e~~~~l~~lk~~~p~~~~~lr  288 (429)
                      ++.+++|+| +            ....+.++++...... .+.+|++||+++.|.. +.+-+..+++.-...+-.++.++
T Consensus         2 r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~-~d~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l~~p~~~v~   80 (267)
T cd07396           2 RFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRES-LDFVVQLGDIIDGDNARAEEALDAVLAILDRLKGPVHHVL   80 (267)
T ss_pred             eEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCC-CCEEEECCCeecCCCchHHHHHHHHHHHHHhcCCCEEEec
Confidence            378899999 2            1345566666554332 4469999999998863 33334333333323345689999


Q ss_pred             CCcccccc
Q 014212          289 GNHESKSM  296 (429)
Q Consensus       289 GNhe~~~~  296 (429)
                      ||||....
T Consensus        81 GNHD~~~~   88 (267)
T cd07396          81 GNHDLYNP   88 (267)
T ss_pred             Cccccccc
Confidence            99997644

Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.11  E-value=0.0057  Score=47.49  Aligned_cols=92  Identities=14%  Similarity=0.213  Sum_probs=70.8

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhC-----------HHHHHHHHHHHHHhCCCChHHH
Q 014212           20 LANEAFRAKKYSQAIDLYSQAIELNSQNA---VYYANRAFAHTKLEE-----------YGSAIQDASKAIEIDPRYPKGY   85 (429)
Q Consensus        20 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~   85 (429)
                      +|..++.+|++-+|++..+..+...+++.   ..+..-|.+++++..           +-.|+++|.++..+.|..+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            57889999999999999999999888876   344455777766543           2357888888888888887788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014212           86 YRRGAAYLAMGKFKEALKDFQQVKKL  111 (429)
Q Consensus        86 ~~la~~~~~~g~~~eA~~~~~~al~~  111 (429)
                      +.+|.-+....-|++++.-.++++..
T Consensus        82 ~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            88877776666777777777777764

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=0.0031  Score=58.15  Aligned_cols=95  Identities=24%  Similarity=0.323  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014212           48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR----YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK  123 (429)
Q Consensus        48 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~  123 (429)
                      +.-+-.-|.-|++.++|..|+.+|.+.|.....    ++..|.+.|.|...+|+|..|+..+.+|+.++|.+..+++.=+
T Consensus        81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A  160 (390)
T KOG0551|consen   81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA  160 (390)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence            445566799999999999999999999988654    4567999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhHHHHHhhcCCccc
Q 014212          124 ECEKAVKKLKFEEAIAVPESE  144 (429)
Q Consensus       124 ~~~~~~~~~~~~~a~~~~~~~  144 (429)
                      .|+..+.+  |.+|...-+.+
T Consensus       161 kc~~eLe~--~~~a~nw~ee~  179 (390)
T KOG0551|consen  161 KCLLELER--FAEAVNWCEEG  179 (390)
T ss_pred             HHHHHHHH--HHHHHHHHhhh
Confidence            99999988  78887776633

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.09  E-value=0.014  Score=52.38  Aligned_cols=83  Identities=19%  Similarity=0.187  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHh----hCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014212           49 VYYANRAFAHTKL----EEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE  124 (429)
Q Consensus        49 ~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~  124 (429)
                      ..+..+|.++...    .++++|.-.|+..-+..|..+......|.|+..+|++++|...++.|+..++++|+++.++-.
T Consensus       170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv  249 (299)
T KOG3081|consen  170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIV  249 (299)
T ss_pred             HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence            3344455555432    357788888888777667778888899999999999999999999999999999999999988


Q ss_pred             HHHHHHh
Q 014212          125 CEKAVKK  131 (429)
Q Consensus       125 ~~~~~~~  131 (429)
                      +-...|+
T Consensus       250 ~a~~~Gk  256 (299)
T KOG3081|consen  250 LALHLGK  256 (299)
T ss_pred             HHHHhCC
Confidence            7777775

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.08  E-value=0.0091  Score=61.85  Aligned_cols=109  Identities=17%  Similarity=0.093  Sum_probs=94.2

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   87 (429)
                      ..+|+...+....|..+.+.|+.++|..+++..-...+++...+..+-.||..++++++|+.+|++++..+|. -+..+.
T Consensus        37 kk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~  115 (932)
T KOG2053|consen   37 KKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYH  115 (932)
T ss_pred             HHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHH
Confidence            4678888999999999999999999998888877788889999999999999999999999999999999999 888888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014212           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPD  117 (429)
Q Consensus        88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~  117 (429)
                      +-.+|.+.+.|.+=.+.--+..+..|+++-
T Consensus       116 lFmayvR~~~yk~qQkaa~~LyK~~pk~~y  145 (932)
T KOG2053|consen  116 LFMAYVREKSYKKQQKAALQLYKNFPKRAY  145 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence            999999999997655554555556676654

>TIGR00619 sbcd exonuclease SbcD

Probab=97.07  E-value=0.0016  Score=59.72  Aligned_cols=71  Identities=21%  Similarity=0.214  Sum_probs=44.6

Q ss_pred             ceEEEccCCC-C-----------HHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHH----HHHHHhhhhCCCeEEE
Q 014212          223 HFTVCGDVHG-Q-----------FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVI----LTLFAFKCMCPSAIYL  286 (429)
Q Consensus       223 ~~~v~GDihG-~-----------~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~----~~l~~lk~~~p~~~~~  286 (429)
                      ++..++|+|- .           ...+.++++..... ..+.+++.||++|+..-+.+..    .++..|+...|-.|++
T Consensus         2 kilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~-~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~   80 (253)
T TIGR00619         2 RILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAE-QIDALLVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIVV   80 (253)
T ss_pred             EEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHc-CCCEEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEE
Confidence            4778889993 2           12334444433222 2456999999999986665543    3444444333457999


Q ss_pred             ecCCcccc
Q 014212          287 SRGNHESK  294 (429)
Q Consensus       287 lrGNhe~~  294 (429)
                      +.||||..
T Consensus        81 i~GNHD~~   88 (253)
T TIGR00619        81 ISGNHDSA   88 (253)
T ss_pred             EccCCCCh
Confidence            99999975

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase

Probab=97.04  E-value=0.0012  Score=59.75  Aligned_cols=67  Identities=13%  Similarity=0.124  Sum_probs=42.4

Q ss_pred             EEEccCCCCH------HHHHHHHHHcCCCCCCCCeEEccccccCC-----CC--cHHHHHHHHHhhhhCCCeEEEecCCc
Q 014212          225 TVCGDVHGQF------YDLLNIFELNGLPSEENPYLFNGDFVDRG-----SF--SVEVILTLFAFKCMCPSAIYLSRGNH  291 (429)
Q Consensus       225 ~v~GDihG~~------~~l~~~l~~~~~~~~~~~~~~lGD~vdrG-----~~--s~e~~~~l~~lk~~~p~~~~~lrGNh  291 (429)
                      .+++|+|...      ..+.+.+.....  ..+.++++||++|..     +.  ..++...+..|+. .+..|++++|||
T Consensus         2 ~~iSDlHl~~~~~~~~~~~l~~l~~~~~--~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~-~~~~v~~v~GNH   78 (231)
T TIGR01854         2 LFISDLHLSPERPDITALFLDFLREEAR--KADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSD-QGVPCYFMHGNR   78 (231)
T ss_pred             eEEEecCCCCCChhHHHHHHHHHHhhhc--cCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHHH-CCCeEEEEcCCC
Confidence            5789999543      234444443221  345699999999952     11  2345666666653 346799999999


Q ss_pred             ccc
Q 014212          292 ESK  294 (429)
Q Consensus       292 e~~  294 (429)
                      |..
T Consensus        79 D~~   81 (231)
T TIGR01854        79 DFL   81 (231)
T ss_pred             chh
Confidence            964

This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.02  E-value=0.0079  Score=55.63  Aligned_cols=123  Identities=11%  Similarity=-0.044  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-CCCC---hHHHHHHHHHH
Q 014212           17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI-DPRY---PKGYYRRGAAY   92 (429)
Q Consensus        17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~   92 (429)
                      ....+-..+..|++.+|....++.++-.|.+.-++..--.+++-+|+.......+++.+-. +|+-   ...+-.++-.+
T Consensus       106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL  185 (491)
T KOG2610|consen  106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL  185 (491)
T ss_pred             hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence            3344556677889999999999999999999988888888899999999999999998876 5554   44445567788


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCC
Q 014212           93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVP  141 (429)
Q Consensus        93 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~  141 (429)
                      .+.|-|++|.+.-+++++++|.+..+...++-++...++  +.++.+..
T Consensus       186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r--~Keg~eFM  232 (491)
T KOG2610|consen  186 EECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGR--HKEGKEFM  232 (491)
T ss_pred             HHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcch--hhhHHHHH
Confidence            899999999999999999999988888888777776666  55555443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.02  E-value=0.006  Score=50.84  Aligned_cols=64  Identities=19%  Similarity=0.202  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 014212           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI   77 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   77 (429)
                      ..++..++..+...|++++|+..+++++..+|.+..++..+-.++..+|+..+|+..|++....
T Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            4567778888999999999999999999999999999999999999999999999999988643

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.01  E-value=0.0025  Score=62.90  Aligned_cols=104  Identities=23%  Similarity=0.212  Sum_probs=92.4

Q ss_pred             HHHhcCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Q 014212           24 AFRAKKYSQAIDLYSQAIELNSQNA-VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL  102 (429)
Q Consensus        24 ~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~  102 (429)
                      ...+|+...|+.++.+|+...|... ....++|.++...|-...|-..+.+++.+....+-.++.+|.+|..+.+.+.|+
T Consensus       617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~  696 (886)
T KOG4507|consen  617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL  696 (886)
T ss_pred             eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence            3457999999999999999988754 346899999999999999999999999999888889999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHH
Q 014212          103 KDFQQVKKLSPNDPDAAQKVKECEK  127 (429)
Q Consensus       103 ~~~~~al~~~p~~~~~~~~l~~~~~  127 (429)
                      +.|++|+.++|+++.....+..+..
T Consensus       697 ~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  697 EAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             HHHHHHHhcCCCChhhHHHHHHHHH
Confidence            9999999999999998777665543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.01  E-value=0.0062  Score=59.40  Aligned_cols=120  Identities=18%  Similarity=0.214  Sum_probs=91.1

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-------CC------------
Q 014212           19 ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI-------DP------------   79 (429)
Q Consensus        19 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p------------   79 (429)
                      .+-+...+..+.++-++.-++|++++|+-+.+|..+|.-.  ..-..+|.+.++++++.       +.            
T Consensus       173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~  250 (539)
T PF04184_consen  173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW  250 (539)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence            4456678889999999999999999999999999888632  22245566666665543       11            


Q ss_pred             ----C--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           80 ----R--YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN--DPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        80 ----~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                          .  ...+..++|.|..++|+.+||++.++..++..|.  +..++.++..++..++.  +.++..+..
T Consensus       251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~--Yad~q~lL~  319 (539)
T PF04184_consen  251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQA--YADVQALLA  319 (539)
T ss_pred             hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCC--HHHHHHHHH
Confidence                0  1345678999999999999999999999998875  56688888888888777  566655554

The molecular function of this protein is uncertain.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.00  E-value=0.024  Score=49.92  Aligned_cols=149  Identities=15%  Similarity=0.127  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHh-hCHHHHHHHHHHHHHhCCC-----
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKL-EEYGSAIQDASKAIEIDPR-----   80 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~-----   80 (429)
                      ++..-+..|.-.++..+.++|+.++++++++..+-      +..+..+|.+|..- .++++|+.+|++|-+....     
T Consensus        72 Daat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~s  151 (288)
T KOG1586|consen   72 DAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVS  151 (288)
T ss_pred             hHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhh
Confidence            33344444555566679999999999999987664      33355788888654 8999999999999876432     


Q ss_pred             -ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCcccccccccccccccccc
Q 014212           81 -YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEV  159 (429)
Q Consensus        81 -~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~  159 (429)
                       -..++...|..-..+++|.+|+..|++.....-+++-..+....-.       +..++-.+-..+...+...+.+-.++
T Consensus       152 sANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf-------lkAgLChl~~~D~v~a~~ALeky~~~  224 (288)
T KOG1586|consen  152 SANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF-------LKAGLCHLCKADEVNAQRALEKYQEL  224 (288)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH-------HHHHHHhHhcccHHHHHHHHHHHHhc
Confidence             2345666677778899999999999999998888877665554333       44455555555666666667777788


Q ss_pred             CCCCCCCcc
Q 014212          160 EPQYSGARI  168 (429)
Q Consensus       160 ~~~~~~~~~  168 (429)
                      +|.|...+-
T Consensus       225 dP~F~dsRE  233 (288)
T KOG1586|consen  225 DPAFTDSRE  233 (288)
T ss_pred             CCcccccHH
Confidence            898877644

>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain

Probab=96.95  E-value=0.0027  Score=57.81  Aligned_cols=67  Identities=27%  Similarity=0.368  Sum_probs=42.4

Q ss_pred             eEEEccCCCC------------HHHHHHHHHHcCCC-CCCCCeEEccccccCCCC-cH-HHHHHHHHhhhhCCCeEEEec
Q 014212          224 FTVCGDVHGQ------------FYDLLNIFELNGLP-SEENPYLFNGDFVDRGSF-SV-EVILTLFAFKCMCPSAIYLSR  288 (429)
Q Consensus       224 ~~v~GDihG~------------~~~l~~~l~~~~~~-~~~~~~~~lGD~vdrG~~-s~-e~~~~l~~lk~~~p~~~~~lr  288 (429)
                      +.+++|+|-.            ...+.++++..... +..+.+|++||+++.|.. .. .+...+-.+    +-.++.++
T Consensus         2 ~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~~----~~p~~~v~   77 (240)
T cd07402           2 LAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGSPESYERLRELLAAL----PIPVYLLP   77 (240)
T ss_pred             EEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCCHHHHHHHHHHHhhc----CCCEEEeC
Confidence            6788899943            33556666654322 344569999999998753 22 222333222    45689999


Q ss_pred             CCcccc
Q 014212          289 GNHESK  294 (429)
Q Consensus       289 GNhe~~  294 (429)
                      ||||..
T Consensus        78 GNHD~~   83 (240)
T cd07402          78 GNHDDR   83 (240)
T ss_pred             CCCCCH
Confidence            999974

GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.95  E-value=0.0017  Score=38.61  Aligned_cols=31  Identities=32%  Similarity=0.657  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 014212           84 GYYRRGAAYLAMGKFKEALKDFQQVKKLSPN  114 (429)
Q Consensus        84 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~  114 (429)
                      +++.+|.++..+|++++|+..|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4555666666666666666666666665554

>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain

Probab=96.93  E-value=0.0038  Score=51.90  Aligned_cols=43  Identities=23%  Similarity=0.291  Sum_probs=28.8

Q ss_pred             CCCeEEccccccCCCCc--HHHHHHHHHhhhhCCCeEEEecCCccc
Q 014212          250 ENPYLFNGDFVDRGSFS--VEVILTLFAFKCMCPSAIYLSRGNHES  293 (429)
Q Consensus       250 ~~~~~~lGD~vdrG~~s--~e~~~~l~~lk~~~p~~~~~lrGNhe~  293 (429)
                      .+.++++||+++.|...  .+...++..+.... ..+++++||||.
T Consensus        36 ~d~vi~~GDl~~~~~~~~~~~~~~~~~~l~~~~-~~~~~v~GNHD~   80 (144)
T cd07400          36 PDLVVITGDLTQRGLPEEFEEAREFLDALPAPL-EPVLVVPGNHDV   80 (144)
T ss_pred             CCEEEECCCCCCCCCHHHHHHHHHHHHHccccC-CcEEEeCCCCeE
Confidence            45699999999998742  12334444443221 378999999997

YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.91  E-value=0.015  Score=56.18  Aligned_cols=127  Identities=15%  Similarity=0.104  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 014212           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA   94 (429)
Q Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   94 (429)
                      ..|...|....++.+...|.+.+-.|+-..|.+-. .-..-.+-.++++++.....|++-++..|.+-.+|...|..-..
T Consensus       405 KiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~Kl-Fk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~  483 (677)
T KOG1915|consen  405 KIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKL-FKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETS  483 (677)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhH-HHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHH
Confidence            34445555555666666666666666666666432 23333444556666666666666666666666666666666666


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           95 MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        95 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      +|+.+.|...|+-|+....-+..-+...+.+-......++++|..+|+
T Consensus       484 LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYe  531 (677)
T KOG1915|consen  484 LGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYE  531 (677)
T ss_pred             hhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHH
Confidence            666666666666666654333333333333333344444555555554

>COG0622 Predicted phosphoesterase [General function prediction only]

Probab=96.90  E-value=0.0025  Score=54.48  Aligned_cols=86  Identities=21%  Similarity=0.315  Sum_probs=56.4

Q ss_pred             ceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccc
Q 014212          223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGF  302 (429)
Q Consensus       223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~  302 (429)
                      .+.+++|.|+......+..+..... .-+.+|.+||++......  .+..-      ....++.++||.|.....     
T Consensus         3 ~ilviSDtH~~~~~~~~~~~~~~~~-~~d~vih~GD~~~~~~~~--~l~~~------~~~~i~~V~GN~D~~~~~-----   68 (172)
T COG0622           3 KILVISDTHGPLRAIEKALKIFNLE-KVDAVIHAGDSTSPFTLD--ALEGG------LAAKLIAVRGNCDGEVDQ-----   68 (172)
T ss_pred             EEEEEeccCCChhhhhHHHHHhhhc-CCCEEEECCCcCCccchH--Hhhcc------cccceEEEEccCCCcccc-----
Confidence            4889999999997655555544333 345699999999865421  11110      247889999999976443     


Q ss_pred             hhhhhcccchHHHHHHHHHhccCcccce--ec-CeEEEEecCc
Q 014212          303 EGEVRSKLSETFVELFAEVFCCLPLAHV--LN-QKVFVVHGGL  342 (429)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~--~~-~~~~~vH~gi  342 (429)
                                          ..+|-..+  ++ -+++++||..
T Consensus        69 --------------------~~~p~~~~~~~~g~ki~l~HGh~   91 (172)
T COG0622          69 --------------------EELPEELVLEVGGVKIFLTHGHL   91 (172)
T ss_pred             --------------------ccCChhHeEEECCEEEEEECCCc
Confidence                                33444333  33 5999999965

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.89  E-value=0.0082  Score=60.27  Aligned_cols=84  Identities=17%  Similarity=0.190  Sum_probs=45.6

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcCCHHHHHHH
Q 014212           29 KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY----PKGYYRRGAAYLAMGKFKEALKD  104 (429)
Q Consensus        29 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~eA~~~  104 (429)
                      +.+.|.+.+....+..|+.+-..+..|.++...|+.++|++.+++++......    .-.++.+|.++..+.++++|..+
T Consensus       248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~  327 (468)
T PF10300_consen  248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY  327 (468)
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence            44555555555555555555555555555555566666666555555322221    12345555555555666666555


Q ss_pred             HHHHHHhC
Q 014212          105 FQQVKKLS  112 (429)
Q Consensus       105 ~~~al~~~  112 (429)
                      +.+..+.+
T Consensus       328 f~~L~~~s  335 (468)
T PF10300_consen  328 FLRLLKES  335 (468)
T ss_pred             HHHHHhcc
Confidence            55555544

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.88  E-value=0.016  Score=63.66  Aligned_cols=97  Identities=10%  Similarity=-0.001  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC--------
Q 014212           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--------   80 (429)
Q Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------   80 (429)
                      .+...+|..+...|++++|...+.+++.....      ...++.++|.++...|++++|...+++++.+-..        
T Consensus       492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~  571 (903)
T PRK04841        492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM  571 (903)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH
Confidence            34445555555566666666666665543221      0223445555566666666666666665554111        


Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014212           81 YPKGYYRRGAAYLAMGKFKEALKDFQQVKKL  111 (429)
Q Consensus        81 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~  111 (429)
                      ....+..+|.++...|++++|...+++++..
T Consensus       572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  602 (903)
T PRK04841        572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEV  602 (903)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh
Confidence            1122344555556666666666666665554

>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional

Probab=96.87  E-value=0.0033  Score=58.58  Aligned_cols=71  Identities=15%  Similarity=0.080  Sum_probs=44.8

Q ss_pred             CceEEEccCCC------------CHHHHHHHHHHcC-CCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEec
Q 014212          222 KHFTVCGDVHG------------QFYDLLNIFELNG-LPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSR  288 (429)
Q Consensus       222 ~~~~v~GDihG------------~~~~l~~~l~~~~-~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lr  288 (429)
                      .++..+.|+|=            ..+.+.++++... ..+..+.+|+.||+++.|.  .+-...++..-...+..++.+.
T Consensus        15 ~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~--~~~~~~~~~~l~~l~~Pv~~v~   92 (275)
T PRK11148         15 VRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHS--SEAYQHFAEGIAPLRKPCVWLP   92 (275)
T ss_pred             EEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCC--HHHHHHHHHHHhhcCCcEEEeC
Confidence            35888999992            1355666676542 2233456999999999874  2233333222222345689999


Q ss_pred             CCcccc
Q 014212          289 GNHESK  294 (429)
Q Consensus       289 GNhe~~  294 (429)
                      ||||..
T Consensus        93 GNHD~~   98 (275)
T PRK11148         93 GNHDFQ   98 (275)
T ss_pred             CCCCCh
Confidence            999974

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.87  E-value=0.055  Score=48.10  Aligned_cols=103  Identities=23%  Similarity=0.180  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-----CCC
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEID-----PRY   81 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~   81 (429)
                      .+..+..-+..|...++|++|...+.+|.+-..++      +.++-..|.....+..+.+++..+++|..+.     |+.
T Consensus        30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt  109 (308)
T KOG1585|consen   30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT  109 (308)
T ss_pred             hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence            34556666777778899999999999999654443      3455667777788899999999999999875     444


Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 014212           82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND  115 (429)
Q Consensus        82 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~  115 (429)
                      +..-...|.-..+.-+.++|++.|++++.+-...
T Consensus       110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~  143 (308)
T KOG1585|consen  110 AAMALEKAAKALENVKPDDALQLYQRALAVVEED  143 (308)
T ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Confidence            4444444555556778999999999999875443

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.87  E-value=0.0037  Score=57.01  Aligned_cols=74  Identities=16%  Similarity=0.128  Sum_probs=66.3

Q ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014212           52 ANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC  125 (429)
Q Consensus        52 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~  125 (429)
                      .+.|.-..+.|+.++|...|+.|+.++|++++++...|.......+.-+|-++|-+|+.++|.+.+++.+.+..
T Consensus       120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            34445567789999999999999999999999999999999999999999999999999999999988777644

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.86  E-value=0.014  Score=64.02  Aligned_cols=128  Identities=13%  Similarity=0.008  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC------
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY------   81 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------   81 (429)
                      .......+|..+...|++++|...++++++..+..     ..+...+|.++...|++++|...+++++......      
T Consensus       451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~  530 (903)
T PRK04841        451 QAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYA  530 (903)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHH
Confidence            34555667889999999999999999999865543     2356778999999999999999999999764321      


Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND--------PDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        82 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~--------~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      ..++..+|.++..+|++++|...+++++.+....        ......++.++...|+  +++|....+
T Consensus       531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~--~~~A~~~~~  597 (903)
T PRK04841        531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWAR--LDEAEQCAR  597 (903)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcC--HHHHHHHHH
Confidence            2466788999999999999999999999873221        1223345555555555  555555444

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.85  E-value=0.02  Score=53.50  Aligned_cols=108  Identities=15%  Similarity=0.102  Sum_probs=88.9

Q ss_pred             hHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh---HHHHH
Q 014212           12 SRAEELKALANEAFR-AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP---KGYYR   87 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~   87 (429)
                      .....|...|...+. .++.+.|...|+++++..|.+...|......+...++.+.|...|++++..-|...   ..|-.
T Consensus        33 ~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~  112 (280)
T PF05843_consen   33 CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKK  112 (280)
T ss_dssp             S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence            345678888888777 56777799999999999999999999999999999999999999999998876644   57888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 014212           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA  119 (429)
Q Consensus        88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~  119 (429)
                      ....-...|+.+......+++.+..|+.....
T Consensus       113 ~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~  144 (280)
T PF05843_consen  113 FIEFESKYGDLESVRKVEKRAEELFPEDNSLE  144 (280)
T ss_dssp             HHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHH
Confidence            88888899999999999999999999855443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=96.84  E-value=0.054  Score=51.76  Aligned_cols=97  Identities=19%  Similarity=0.322  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-------------C-----HHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 014212           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQ-------------N-----AVYYANRAFAHTKLEEYGSAIQDASKAIE   76 (429)
Q Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-------------~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~   76 (429)
                      ++-..-|..++++++|..|..-|..|+++..+             +     ..+...+..||.++++.+.|+....+.|.
T Consensus       177 ~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~  256 (569)
T PF15015_consen  177 QVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSIN  256 (569)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhh
Confidence            34445677788899999998888888876322             1     23456789999999999999999999999


Q ss_pred             hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014212           77 IDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL  111 (429)
Q Consensus        77 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~  111 (429)
                      ++|.+...+...|.++..+.+|.+|...+.-|.-+
T Consensus       257 lnP~~frnHLrqAavfR~LeRy~eAarSamia~ym  291 (569)
T PF15015_consen  257 LNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYM  291 (569)
T ss_pred             cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999888776654

>PHA02546 47 endonuclease subunit; Provisional

Probab=96.82  E-value=0.0029  Score=60.86  Aligned_cols=71  Identities=15%  Similarity=0.166  Sum_probs=43.8

Q ss_pred             ceEEEccCC-CC-----------HHHHHHHHHHcCCCCCCCCeEEccccccCC-CCcHHHHHHHHH----hhhhCCCeEE
Q 014212          223 HFTVCGDVH-GQ-----------FYDLLNIFELNGLPSEENPYLFNGDFVDRG-SFSVEVILTLFA----FKCMCPSAIY  285 (429)
Q Consensus       223 ~~~v~GDih-G~-----------~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG-~~s~e~~~~l~~----lk~~~p~~~~  285 (429)
                      ++..++|+| |.           ...+.++++..... ..+.+++.||+.|+. +.+.+++.++..    .....+-.|+
T Consensus         2 KilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~-~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi~v~   80 (340)
T PHA02546          2 KILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAH-GITTWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEAGITLH   80 (340)
T ss_pred             eEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHc-CCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence            477889999 31           23344444443322 235699999999985 445555444433    2122356799


Q ss_pred             EecCCcccc
Q 014212          286 LSRGNHESK  294 (429)
Q Consensus       286 ~lrGNhe~~  294 (429)
                      +|.||||..
T Consensus        81 ~I~GNHD~~   89 (340)
T PHA02546         81 VLVGNHDMY   89 (340)
T ss_pred             EEccCCCcc
Confidence            999999964

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.81  E-value=0.051  Score=48.95  Aligned_cols=105  Identities=21%  Similarity=0.266  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212           14 AEELKALANEAFR----AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (429)
Q Consensus        14 ~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   89 (429)
                      -..+.++|..+.+    .+++.+|.-+|++.-+..|..+......+.|++++++|++|...++.|+..++++++++.++-
T Consensus       169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nli  248 (299)
T KOG3081|consen  169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLI  248 (299)
T ss_pred             HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence            3445556666553    346889999999988888888999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHH-HHHHHHhCCCCHHH
Q 014212           90 AAYLAMGKFKEALKD-FQQVKKLSPNDPDA  118 (429)
Q Consensus        90 ~~~~~~g~~~eA~~~-~~~al~~~p~~~~~  118 (429)
                      .+-..+|+-.++.+- +.+....+|+++-.
T Consensus       249 v~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v  278 (299)
T KOG3081|consen  249 VLALHLGKDAEVTERNLSQLKLSHPEHPFV  278 (299)
T ss_pred             HHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence            999999988776655 45555667777654

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=96.80  E-value=0.041  Score=59.82  Aligned_cols=125  Identities=12%  Similarity=-0.051  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 014212           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA   94 (429)
Q Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   94 (429)
                      ..|..+-+....-|.-+.-.+.|++|-+.+ +....+..|..+|....++++|.+.++..++........|..+|..+..
T Consensus      1498 NiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~ 1576 (1710)
T KOG1070|consen 1498 NIWIAYLNLENAYGTEESLKKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR 1576 (1710)
T ss_pred             HHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence            344444444444444444455555554432 2244555556666666666666666666665555555566666666666


Q ss_pred             cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           95 MGKFKEALKDFQQVKKLSPN--DPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        95 ~g~~~eA~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      +.+-++|...+.+|++.-|.  +.+.....+.+..+.|+  .+.+..+++
T Consensus      1577 ~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD--aeRGRtlfE 1624 (1710)
T KOG1070|consen 1577 QNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD--AERGRTLFE 1624 (1710)
T ss_pred             ccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC--chhhHHHHH
Confidence            66666666666666666655  44555555555555554  344444444

>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain

Probab=96.80  E-value=0.0026  Score=58.40  Aligned_cols=70  Identities=19%  Similarity=0.247  Sum_probs=43.5

Q ss_pred             eEEEccCCCCHHHHHHHHHHcCC--CCCCCCeEEccccccCCCCc-HHHH-------------HHHHHhhhhCCCeEEEe
Q 014212          224 FTVCGDVHGQFYDLLNIFELNGL--PSEENPYLFNGDFVDRGSFS-VEVI-------------LTLFAFKCMCPSAIYLS  287 (429)
Q Consensus       224 ~~v~GDihG~~~~l~~~l~~~~~--~~~~~~~~~lGD~vdrG~~s-~e~~-------------~~l~~lk~~~p~~~~~l  287 (429)
                      +.|+||+||.++.+.+.++....  ....+-+|.+||+-..+..+ .+.+             .++-. ....|--+++|
T Consensus         1 i~v~Gd~HG~~~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g-~~~~p~~t~fi   79 (262)
T cd00844           1 IAVEGCCHGELDKIYETLEKIEKKEGTKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSG-EKKAPILTIFI   79 (262)
T ss_pred             CEEEecCCccHHHHHHHHHHHHHhcCCCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcC-CccCCeeEEEE
Confidence            47899999999988774443211  12345699999996544433 3222             11111 22356668899


Q ss_pred             cCCcccc
Q 014212          288 RGNHESK  294 (429)
Q Consensus       288 rGNhe~~  294 (429)
                      .||||..
T Consensus        80 ~GNHE~~   86 (262)
T cd00844          80 GGNHEAS   86 (262)
T ss_pred             CCCCCCH
Confidence            9999964

Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.77  E-value=0.003  Score=38.73  Aligned_cols=26  Identities=19%  Similarity=0.406  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014212           85 YYRRGAAYLAMGKFKEALKDFQQVKK  110 (429)
Q Consensus        85 ~~~la~~~~~~g~~~eA~~~~~~al~  110 (429)
                      |.+||.+|..+|++++|+++|++++.
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45566666666666666666666443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.77  E-value=0.0031  Score=37.44  Aligned_cols=31  Identities=23%  Similarity=0.393  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 014212           16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQ   46 (429)
Q Consensus        16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~   46 (429)
                      +++.+|.++.+.|++++|++.|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            3444455555555555555555555544443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.76  E-value=0.018  Score=43.54  Aligned_cols=65  Identities=17%  Similarity=0.124  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcCC
Q 014212           33 AIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY--PKGYYRRGAAYLAMGK   97 (429)
Q Consensus        33 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~   97 (429)
                      .+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.++++  ..+.-.+-.++..+|.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            3556777777788888888888888888888888888888777777654  3344444444444444

>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain

Probab=96.76  E-value=0.0023  Score=55.64  Aligned_cols=45  Identities=22%  Similarity=0.332  Sum_probs=33.1

Q ss_pred             CCCeEEccccccCCCCc--HHHHHHHHHhhhhCC----CeEEEecCCcccc
Q 014212          250 ENPYLFNGDFVDRGSFS--VEVILTLFAFKCMCP----SAIYLSRGNHESK  294 (429)
Q Consensus       250 ~~~~~~lGD~vdrG~~s--~e~~~~l~~lk~~~p----~~~~~lrGNhe~~  294 (429)
                      .+.++|+||++|.|+.+  .+....+..++..++    -.++.+.||||.-
T Consensus        43 PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG   93 (195)
T cd08166          43 PDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIG   93 (195)
T ss_pred             CCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcC
Confidence            45699999999999964  346666666654332    5678899999975

A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.75  E-value=0.031  Score=54.50  Aligned_cols=92  Identities=13%  Similarity=0.154  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Q 014212           32 QAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGK-FKEALKDFQQVKK  110 (429)
Q Consensus        32 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~eA~~~~~~al~  110 (429)
                      +-+..|++|+..-+.|...|........+.+.+.+--..|.+++..+|++++.|..-|.-.++-+. .+.|...|.++++
T Consensus        89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR  168 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR  168 (568)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence            456779999999999999999998877777779999999999999999999999999987777776 8999999999999


Q ss_pred             hCCCCHHHHHHHH
Q 014212          111 LSPNDPDAAQKVK  123 (429)
Q Consensus       111 ~~p~~~~~~~~l~  123 (429)
                      .+|+++..+...-
T Consensus       169 ~npdsp~Lw~eyf  181 (568)
T KOG2396|consen  169 FNPDSPKLWKEYF  181 (568)
T ss_pred             cCCCChHHHHHHH
Confidence            9999998775443

>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain

Probab=96.72  E-value=0.0039  Score=55.77  Aligned_cols=47  Identities=23%  Similarity=0.272  Sum_probs=29.0

Q ss_pred             CCCCeEEccccccCC-----C--Cc-HHHHHHHHHhhhhCCCeEEEecCCcccccc
Q 014212          249 EENPYLFNGDFVDRG-----S--FS-VEVILTLFAFKCMCPSAIYLSRGNHESKSM  296 (429)
Q Consensus       249 ~~~~~~~lGD~vdrG-----~--~s-~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~  296 (429)
                      ..+.+|++||++|.-     .  .. .+++..++.+. ..+..|+.+.||||....
T Consensus        30 ~~~~lvl~GDi~d~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~v~~v~GNHD~~~~   84 (217)
T cd07398          30 EADALYLLGDIFDLWFGDDEVVPPAAHEVLAALLRLA-DRGTRVYYVPGNHDFLLG   84 (217)
T ss_pred             CCCEEEEeccEEEEEecCCCCCChHHHHHHHHHHHHH-HCCCeEEEECCCchHHHH
Confidence            345699999999741     1  11 22223333332 345789999999997543

YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l

>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain

Probab=96.72  E-value=0.0037  Score=55.21  Aligned_cols=70  Identities=11%  Similarity=0.034  Sum_probs=42.1

Q ss_pred             ceEEEccCCCCHH-----------HHHHHHHHcCCCCCCCCeEEccccccCCCCc---HHHHHHHHHhhhhCCCeEEEec
Q 014212          223 HFTVCGDVHGQFY-----------DLLNIFELNGLPSEENPYLFNGDFVDRGSFS---VEVILTLFAFKCMCPSAIYLSR  288 (429)
Q Consensus       223 ~~~v~GDihG~~~-----------~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s---~e~~~~l~~lk~~~p~~~~~lr  288 (429)
                      ++.+++|+|-...           ...+.+...-.....+.+|++||+++.+...   .+.+..+++......-.++++.
T Consensus         4 ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~   83 (199)
T cd07383           4 KILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWAATF   83 (199)
T ss_pred             EEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEEEEC
Confidence            4788899995222           1122222211112335699999999977653   5555555544333445688899


Q ss_pred             CCcc
Q 014212          289 GNHE  292 (429)
Q Consensus       289 GNhe  292 (429)
                      ||||
T Consensus        84 GNHD   87 (199)
T cd07383          84 GNHD   87 (199)
T ss_pred             ccCC
Confidence            9999

DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP

>PRK10941 hypothetical protein; Provisional

Probab=96.71  E-value=0.027  Score=51.93  Aligned_cols=78  Identities=17%  Similarity=0.191  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 014212           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA   91 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~   91 (429)
                      ...+.++=..|.+.++++.|+.+.+..+.+.|+++.-+.-+|.+|.++|.+..|...++.-++.-|+++.+-.-...+
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql  258 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI  258 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence            345667788899999999999999999999999999999999999999999999999999999999998876544433

>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain

Probab=96.69  E-value=0.0036  Score=56.20  Aligned_cols=73  Identities=25%  Similarity=0.224  Sum_probs=44.3

Q ss_pred             eEEEccCCCCH---------------HHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhh-hh--CCCeEE
Q 014212          224 FTVCGDVHGQF---------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFK-CM--CPSAIY  285 (429)
Q Consensus       224 ~~v~GDihG~~---------------~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk-~~--~p~~~~  285 (429)
                      +..++|+|=..               ..+.++++..... ..+.+++.||+++....+.+.+..+.... ..  .+-.++
T Consensus         2 i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (223)
T cd00840           2 FLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEE-KVDFVLIAGDLFDSNNPSPEALELLIEALRRLKEAGIPVF   80 (223)
T ss_pred             eEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhc-CCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHCCCCEE
Confidence            67788888321               2345555544322 23469999999998875554433333222 11  245689


Q ss_pred             EecCCcccccch
Q 014212          286 LSRGNHESKSMN  297 (429)
Q Consensus       286 ~lrGNhe~~~~~  297 (429)
                      ++.||||.....
T Consensus        81 ~~~GNHD~~~~~   92 (223)
T cd00840          81 IIAGNHDSPSRL   92 (223)
T ss_pred             EecCCCCCcccc
Confidence            999999976543

Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=96.68  E-value=0.05  Score=43.78  Aligned_cols=84  Identities=13%  Similarity=0.181  Sum_probs=68.2

Q ss_pred             CHHHHHHHHHHHHHhh---CHHHHHHHHHHHHH-hCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014212           47 NAVYYANRAFAHTKLE---EYGSAIQDASKAIE-IDPR-YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK  121 (429)
Q Consensus        47 ~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~  121 (429)
                      .....++++.++....   +.++.+..++..+. -.|+ .-+..|.||..+++.++|++|+.+.+..++..|+|+++...
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            3556788888887765   56678889999886 4443 45688999999999999999999999999999999999877


Q ss_pred             HHHHHHHHH
Q 014212          122 VKECEKAVK  130 (429)
Q Consensus       122 l~~~~~~~~  130 (429)
                      ...+...+.
T Consensus       111 k~~ied~it  119 (149)
T KOG3364|consen  111 KETIEDKIT  119 (149)
T ss_pred             HHHHHHHHh
Confidence            766655544

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.67  E-value=0.021  Score=57.38  Aligned_cols=104  Identities=18%  Similarity=0.155  Sum_probs=78.2

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-h
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ----NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-P   82 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~   82 (429)
                      ..-|+.+-.++..|..+..+|+.++|++.|++++.....    ..-.++.+|.+++.+.+|++|..++.+..+.+.-. +
T Consensus       261 ~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka  340 (468)
T PF10300_consen  261 KRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKA  340 (468)
T ss_pred             HhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHH
Confidence            345777888889999999999999999999988854333    23457788999999999999999999998865432 2


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014212           83 KGYYRRGAAYLAMGKFKEALKDFQQVKKL  111 (429)
Q Consensus        83 ~~~~~la~~~~~~g~~~eA~~~~~~al~~  111 (429)
                      -..|..|.|+...++.+.+...-++|.++
T Consensus       341 ~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l  369 (468)
T PF10300_consen  341 FYAYLAAACLLMLGREEEAKEHKKEAEEL  369 (468)
T ss_pred             HHHHHHHHHHHhhccchhhhhhHHHHHHH
Confidence            23455678888888886666655555554

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.66  E-value=0.25  Score=41.32  Aligned_cols=114  Identities=18%  Similarity=0.125  Sum_probs=92.6

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   89 (429)
                      ...-...+..........++.+++...+...--+.|..+..-..-|..+...|++.+|+..++.+.+..|..+.+--.++
T Consensus         6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA   85 (160)
T PF09613_consen    6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLA   85 (160)
T ss_pred             cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence            44556788889999999999999999999988899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Q 014212           90 AAYLAMGKFKEALKD-FQQVKKLSPNDPDAAQKVKECE  126 (429)
Q Consensus        90 ~~~~~~g~~~eA~~~-~~~al~~~p~~~~~~~~l~~~~  126 (429)
                      .|+..+|+.+  -.. -+.+++- +.++.+......+.
T Consensus        86 ~CL~~~~D~~--Wr~~A~evle~-~~d~~a~~Lv~~Ll  120 (160)
T PF09613_consen   86 LCLYALGDPS--WRRYADEVLES-GADPDARALVRALL  120 (160)
T ss_pred             HHHHHcCChH--HHHHHHHHHhc-CCChHHHHHHHHHH
Confidence            9999999862  222 2234443 44566655554443

>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain

Probab=96.64  E-value=0.0049  Score=55.87  Aligned_cols=41  Identities=24%  Similarity=0.251  Sum_probs=27.8

Q ss_pred             CCCCeEEccccccCCCCc--HHHHHHHHHhhhhCCCeEEEecCCccc
Q 014212          249 EENPYLFNGDFVDRGSFS--VEVILTLFAFKCMCPSAIYLSRGNHES  293 (429)
Q Consensus       249 ~~~~~~~lGD~vdrG~~s--~e~~~~l~~lk~~~p~~~~~lrGNhe~  293 (429)
                      ..+.+++.||++++++..  .+.+..|.++    |..++++.||||.
T Consensus        41 ~~D~viiaGDl~~~~~~~~~~~~l~~l~~l----~~~v~~V~GNHD~   83 (232)
T cd07393          41 PEDIVLIPGDISWAMKLEEAKLDLAWIDAL----PGTKVLLKGNHDY   83 (232)
T ss_pred             CCCEEEEcCCCccCCChHHHHHHHHHHHhC----CCCeEEEeCCccc
Confidence            456688999999887632  2334444333    3348899999997

DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.62  E-value=0.019  Score=51.59  Aligned_cols=72  Identities=21%  Similarity=0.237  Sum_probs=65.9

Q ss_pred             CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 014212           47 NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA  118 (429)
Q Consensus        47 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~  118 (429)
                      .+.-|++-|...++.|++++|.+.|+++....|..   ..+...++.++++.+++++|+...++-+++.|.++++
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~  107 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA  107 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence            46778999999999999999999999999998864   5689999999999999999999999999999998775

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.60  E-value=0.0047  Score=37.83  Aligned_cols=23  Identities=30%  Similarity=0.453  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHH
Q 014212           17 LKALANEAFRAKKYSQAIDLYSQ   39 (429)
Q Consensus        17 ~~~~a~~~~~~g~~~~A~~~~~~   39 (429)
                      +..+|.+|.+.|+|++|+++|++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            34445555555555555555555

>PRK04036 DNA polymerase II small subunit; Validated

Probab=96.56  E-value=0.0057  Score=61.90  Aligned_cols=74  Identities=23%  Similarity=0.257  Sum_probs=43.6

Q ss_pred             CCceEEEccCC-CCH----HHHHHHHHHc-CC-------CCCCCCeEEccccccC-CCCc---------------HHHHH
Q 014212          221 GKHFTVCGDVH-GQF----YDLLNIFELN-GL-------PSEENPYLFNGDFVDR-GSFS---------------VEVIL  271 (429)
Q Consensus       221 ~~~~~v~GDih-G~~----~~l~~~l~~~-~~-------~~~~~~~~~lGD~vdr-G~~s---------------~e~~~  271 (429)
                      ...+.++.|+| |..    ..+..+++.. |.       ....+.+|++||++|. |+.+               .++..
T Consensus       243 ~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l~~  322 (504)
T PRK04036        243 KVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAAAE  322 (504)
T ss_pred             ccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHHHH
Confidence            34688899999 542    2233333322 22       1223569999999994 3221               13445


Q ss_pred             HHHHhhhhCCCeEEEecCCcccccc
Q 014212          272 TLFAFKCMCPSAIYLSRGNHESKSM  296 (429)
Q Consensus       272 ~l~~lk~~~p~~~~~lrGNhe~~~~  296 (429)
                      +|..+.  ..-.|++++||||....
T Consensus       323 ~L~~L~--~~i~V~~ipGNHD~~~~  345 (504)
T PRK04036        323 YLKQIP--EDIKIIISPGNHDAVRQ  345 (504)
T ss_pred             HHHhhh--cCCeEEEecCCCcchhh
Confidence            555543  33579999999997543

>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain

Probab=96.54  E-value=0.0065  Score=54.32  Aligned_cols=104  Identities=17%  Similarity=0.104  Sum_probs=53.9

Q ss_pred             eEEEccCCCCHH----HHH----HHHHHcCCCCCCCCeEEccccccCCCCcH---HHHHHHHHhhhhCCCeEEEecCCcc
Q 014212          224 FTVCGDVHGQFY----DLL----NIFELNGLPSEENPYLFNGDFVDRGSFSV---EVILTLFAFKCMCPSAIYLSRGNHE  292 (429)
Q Consensus       224 ~~v~GDihG~~~----~l~----~~l~~~~~~~~~~~~~~lGD~vdrG~~s~---e~~~~l~~lk~~~p~~~~~lrGNhe  292 (429)
                      +.+++|+|-..+    .+.    .+.+..... ..+.++++||+++.|....   +....+..|. ..+--++.++||||
T Consensus         3 ~~~~~D~q~~~~~~~~~~~~~~~~i~~~~~~~-~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~-~~~~p~~~~~GNHD   80 (214)
T cd07399           3 LAVLPDTQYYTESYPEVFDAQTDWIVDNAEAL-NIAFVLHLGDIVDDGDNDAEWEAADKAFARLD-KAGIPYSVLAGNHD   80 (214)
T ss_pred             EEEecCCCcCCcCCHHHHHHHHHHHHHHHHHc-CCCEEEECCCccCCCCCHHHHHHHHHHHHHHH-HcCCcEEEECCCCc
Confidence            788999985222    222    233332211 2346899999999998433   2222222222 12345788999999


Q ss_pred             cccchhhccchhhhhcccchHHHHHHHHHhccCcccceecCeEEEEecCc
Q 014212          293 SKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGL  342 (429)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~vH~gi  342 (429)
                      ..... .+.        ...+-.+.+.+.++.-|-    ..-++++|-=+
T Consensus        81 ~~~~l-d~~--------~~~~ql~WL~~~L~~~~~----~~~iv~~H~p~  117 (214)
T cd07399          81 LVLAL-EFG--------PRDEVLQWANEVLKKHPD----RPAILTTHAYL  117 (214)
T ss_pred             chhhC-CCC--------CCHHHHHHHHHHHHHCCC----CCEEEEecccc
Confidence            32111 111        123333445555554331    23578888643

YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.46  E-value=0.042  Score=55.05  Aligned_cols=98  Identities=24%  Similarity=0.247  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (429)
Q Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   88 (429)
                      ..+++.|..+++..+|..|++.|...++--|.|      +....+++.||..+.+.+.|+++++.|-+.+|.++-.-+..
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~  434 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM  434 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            357888999999999999999999999876654      56677899999999999999999999999999999988888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC
Q 014212           89 GAAYLAMGKFKEALKDFQQVKKLS  112 (429)
Q Consensus        89 a~~~~~~g~~~eA~~~~~~al~~~  112 (429)
                      -.+....+.-++|+.+..+.....
T Consensus       435 ~~~~~~E~~Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  435 LQSFLAEDKSEEALTCLQKIKSSE  458 (872)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhhh
Confidence            888999999999999988777643

>smart00028 TPR Tetratricopeptide repeats

Probab=96.45  E-value=0.0055  Score=35.42  Aligned_cols=29  Identities=38%  Similarity=0.485  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHhCC
Q 014212           51 YANRAFAHTKLEEYGSAIQDASKAIEIDP   79 (429)
Q Consensus        51 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p   79 (429)
                      +..+|.+++.++++++|+.+++++++.+|
T Consensus         4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        4 LYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            44444445445555555555544444444

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.43  E-value=0.0044  Score=54.28  Aligned_cols=60  Identities=23%  Similarity=0.255  Sum_probs=46.5

Q ss_pred             HHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC
Q 014212           22 NEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY   81 (429)
Q Consensus        22 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   81 (429)
                      ....+.++.+.|.+.|.+++++.|.....|+.+|....+.|+++.|.+.|++.++++|.+
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            344566777888888888888888888888888888888888888888888888887764

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.41  E-value=0.061  Score=52.71  Aligned_cols=56  Identities=20%  Similarity=0.165  Sum_probs=26.0

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhhCHHHHHHHHHH
Q 014212           18 KALANEAFRAKKYSQAIDLYSQAIELNSQ--NAVYYANRAFAHTKLEEYGSAIQDASK   73 (429)
Q Consensus        18 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~   73 (429)
                      +.+|.++.+.|+.++|++.++..++..|.  +..++.++..++..++.|.++...+.+
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k  320 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK  320 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            34444444555555555555554444433  233444444555555554444444433

The molecular function of this protein is uncertain.

>smart00028 TPR Tetratricopeptide repeats

Probab=96.36  E-value=0.0064  Score=35.11  Aligned_cols=32  Identities=38%  Similarity=0.781  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 014212           83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN  114 (429)
Q Consensus        83 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~  114 (429)
                      .+++.+|.++..++++++|+..++++++..|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            35566666666666666666666666666654

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]

Probab=96.36  E-value=0.014  Score=47.76  Aligned_cols=45  Identities=18%  Similarity=0.119  Sum_probs=31.4

Q ss_pred             CCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccch
Q 014212          249 EENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMN  297 (429)
Q Consensus       249 ~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~  297 (429)
                      +.+.+.+|||+.-.-..--+....+-+|    |+++++++||||.--..
T Consensus        45 p~D~lwhLGDl~~~~n~~~~a~~IlerL----nGrkhlv~GNhDk~~~~   89 (186)
T COG4186          45 PDDVLWHLGDLSSGANRERAAGLILERL----NGRKHLVPGNHDKCHPM   89 (186)
T ss_pred             ccceEEEecccccccchhhHHHHHHHHc----CCcEEEeeCCCCCCccc
Confidence            4567999999987544444444444333    78999999999975443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.34  E-value=0.026  Score=42.66  Aligned_cols=65  Identities=18%  Similarity=0.269  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHh
Q 014212           67 AIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND--PDAAQKVKECEKAVKK  131 (429)
Q Consensus        67 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~  131 (429)
                      .+..++++++.+|++..+.+.+|..+...|++++|++.+-.+++.++++  ..+...+-.+...+|.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            4667899999999999999999999999999999999999999998766  6677777777777775

>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related

Probab=96.32  E-value=0.011  Score=53.15  Aligned_cols=42  Identities=19%  Similarity=0.116  Sum_probs=28.1

Q ss_pred             CCCeEEccccccCCCC---cHHHHHHHHHhhhhCCCeEEEecCCccccc
Q 014212          250 ENPYLFNGDFVDRGSF---SVEVILTLFAFKCMCPSAIYLSRGNHESKS  295 (429)
Q Consensus       250 ~~~~~~lGD~vdrG~~---s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~  295 (429)
                      .+.++++||+.+....   ..++..++..+    ...+++++||||...
T Consensus        59 ~d~vIi~GDl~h~~~~~~~~~~~~~~l~~~----~~~v~~V~GNHD~~~  103 (225)
T TIGR00024        59 IEALIINGDLKHEFKKGLEWRFIREFIEVT----FRDLILIRGNHDALI  103 (225)
T ss_pred             CCEEEEcCccccccCChHHHHHHHHHHHhc----CCcEEEECCCCCCcc
Confidence            3569999999975554   22333344333    247999999999754

Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=96.27  E-value=0.0082  Score=55.98  Aligned_cols=118  Identities=26%  Similarity=0.423  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----------C--------CHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 014212           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNS-----------Q--------NAVYYANRAFAHTKLEEYGSAIQDASKA   74 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-----------~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~a   74 (429)
                      .+.....|+..++.++|+.|..-|.++++.-.           +        -...+.+++.+-...+.+..|+.....+
T Consensus       222 ~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~  301 (372)
T KOG0546|consen  222 EEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEA  301 (372)
T ss_pred             hhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccc
Confidence            34556678889999999999999999886311           1        1234567888999999999999999999


Q ss_pred             HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212           75 IEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (429)
Q Consensus        75 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  131 (429)
                      ++.+++...+++..+..+....++++|.+.+..+....|++..+...+..+.....+
T Consensus       302 ~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~  358 (372)
T KOG0546|consen  302 LRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQ  358 (372)
T ss_pred             cccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHH
Confidence            999999999999999999999999999999999999999999988777766655554

>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain

Probab=96.26  E-value=0.0066  Score=52.14  Aligned_cols=46  Identities=24%  Similarity=0.355  Sum_probs=29.7

Q ss_pred             CCCeEEccccccCCCCcH--H---HHHHHHHhhhhC-----CCeEEEecCCccccc
Q 014212          250 ENPYLFNGDFVDRGSFSV--E---VILTLFAFKCMC-----PSAIYLSRGNHESKS  295 (429)
Q Consensus       250 ~~~~~~lGD~vdrG~~s~--e---~~~~l~~lk~~~-----p~~~~~lrGNhe~~~  295 (429)
                      .+.+|++||++|.|..+.  +   .+..+..+....     +..+++++||||...
T Consensus        46 pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g~  101 (171)
T cd07384          46 PDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIGY  101 (171)
T ss_pred             CCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCccccCC
Confidence            456999999999887532  2   333332322111     456999999999864

Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit

>TIGR00583 mre11 DNA repair protein (mre11)

Probab=96.25  E-value=0.016  Score=56.67  Aligned_cols=73  Identities=15%  Similarity=0.260  Sum_probs=52.1

Q ss_pred             CceEEEccCCCC------------HHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhh----------
Q 014212          222 KHFTVCGDVHGQ------------FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCM----------  279 (429)
Q Consensus       222 ~~~~v~GDihG~------------~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~----------  279 (429)
                      .++.+++|+|-.            +..+.++++.+... ..+-+++.||+.|++.-|.+++..++.+..+          
T Consensus         4 mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~-~vD~VLiaGDLFd~~~Ps~~~~~~~~~~lr~~~~g~~p~~~   82 (405)
T TIGR00583         4 IRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQ-DVDMILLGGDLFHENKPSRKSLYQVLRSLRLYCLGDKPCEL   82 (405)
T ss_pred             eEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHc-CCCEEEECCccCCCCCCCHHHHHHHHHHHHHhhccCCccch
Confidence            458889999943            44566676665433 3456888999999999998888665554322          


Q ss_pred             --------------------------CCCeEEEecCCccccc
Q 014212          280 --------------------------CPSAIYLSRGNHESKS  295 (429)
Q Consensus       280 --------------------------~p~~~~~lrGNhe~~~  295 (429)
                                                ..--||++-||||...
T Consensus        83 ~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~  124 (405)
T TIGR00583        83 EFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPS  124 (405)
T ss_pred             hhccchhhhcccccccccccccccccCCCCEEEEcCCCCCcc
Confidence                                      1347999999999875

All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.23  E-value=0.026  Score=37.80  Aligned_cols=36  Identities=19%  Similarity=0.209  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHH
Q 014212           16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYY   51 (429)
Q Consensus        16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~   51 (429)
                      .++.+|..+++.|+|++|..+.+.+++.+|++..+.
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~   38 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ   38 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            345555555555555555555555555555555443

>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain

Probab=96.18  E-value=0.0096  Score=50.29  Aligned_cols=46  Identities=20%  Similarity=0.234  Sum_probs=29.0

Q ss_pred             CCCeEEccccccCCCCcH-H----HHHHHHHhhhhC-CCeEEEecCCccccc
Q 014212          250 ENPYLFNGDFVDRGSFSV-E----VILTLFAFKCMC-PSAIYLSRGNHESKS  295 (429)
Q Consensus       250 ~~~~~~lGD~vdrG~~s~-e----~~~~l~~lk~~~-p~~~~~lrGNhe~~~  295 (429)
                      .+.++++||+++.+..+. +    .+..+.++.... +-.++++.||||...
T Consensus        39 pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~~   90 (156)
T cd08165          39 PDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIGF   90 (156)
T ss_pred             CCEEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcCC
Confidence            456999999999886432 2    222222222111 356899999999753

MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.15  E-value=0.0078  Score=52.78  Aligned_cols=62  Identities=23%  Similarity=0.460  Sum_probs=57.2

Q ss_pred             HHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014212           56 FAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD  117 (429)
Q Consensus        56 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~  117 (429)
                      ....+.++.+.|.+.|.+++++-|++...|+++|....+.|+++.|...|++.++++|++..
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            34567789999999999999999999999999999999999999999999999999998743

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.14  E-value=0.18  Score=48.56  Aligned_cols=121  Identities=17%  Similarity=0.100  Sum_probs=98.8

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-CC-----
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ----NAVYYANRAFAHTKLEEYGSAIQDASKAIEI-DP-----   79 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p-----   79 (429)
                      ....+..+...+..+.+.|+++.|...+.++...++.    .+.+.+..+..+...|+..+|+..++..+.. ..     
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~  221 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS  221 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence            4456778999999999999999999999999886522    5677788899999999999999999888871 10     


Q ss_pred             ----------------------------CChHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014212           80 ----------------------------RYPKGYYRRGAAYLAM------GKFKEALKDFQQVKKLSPNDPDAAQKVKEC  125 (429)
Q Consensus        80 ----------------------------~~~~~~~~la~~~~~~------g~~~eA~~~~~~al~~~p~~~~~~~~l~~~  125 (429)
                                                  ..+.+++.+|.....+      +..+++...|+++++++|+...+++..+..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~  301 (352)
T PF02259_consen  222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF  301 (352)
T ss_pred             ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence                                        0134677777777777      888999999999999999999999988887


Q ss_pred             HHHHH
Q 014212          126 EKAVK  130 (429)
Q Consensus       126 ~~~~~  130 (429)
                      +..+-
T Consensus       302 ~~~~~  306 (352)
T PF02259_consen  302 NDKLL  306 (352)
T ss_pred             HHHHH
Confidence            65543

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain

Probab=96.12  E-value=0.031  Score=51.35  Aligned_cols=78  Identities=17%  Similarity=0.198  Sum_probs=42.2

Q ss_pred             CCCeEEccccccCCCCcHH-----HHHHHHHh-hhhC-CCeEEEecCCcccccchhhccchhhhhcccchHHHHHHHHHh
Q 014212          250 ENPYLFNGDFVDRGSFSVE-----VILTLFAF-KCMC-PSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVF  322 (429)
Q Consensus       250 ~~~~~~lGD~vdrG~~s~e-----~~~~l~~l-k~~~-p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (429)
                      .+.++|+||++|.|.....     -+..+..+ .... ...++.|.||||.-       +...    .....++.|.++|
T Consensus        46 PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig-------~~~~----~~~~~~~rf~~~F  114 (257)
T cd08163          46 PDSTIFLGDLFDGGRDWADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIG-------FGNG----VVLPVRQRFEKYF  114 (257)
T ss_pred             CCEEEEecccccCCeeCcHHHHHHHHHHHHHHhcCCCccceEEEeCCCcccC-------CCCC----CCHHHHHHHHHHh
Confidence            3469999999999986421     12222222 1110 13588999999962       2211    1123456677777


Q ss_pred             ccCcccceecCeEEEE
Q 014212          323 CCLPLAHVLNQKVFVV  338 (429)
Q Consensus       323 ~~lp~~~~~~~~~~~v  338 (429)
                      ........+++--|++
T Consensus       115 g~~~~~~~~~~~~fV~  130 (257)
T cd08163         115 GPTSRVIDVGNHTFVI  130 (257)
T ss_pred             CCCceEEEECCEEEEE
Confidence            6544444445533443

Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site

>PRK10966 exonuclease subunit SbcD; Provisional

Probab=96.12  E-value=0.012  Score=57.84  Aligned_cols=71  Identities=18%  Similarity=0.157  Sum_probs=42.6

Q ss_pred             ceEEEccCCCCH--------HH----HHHHHHHcCCCCCCCCeEEccccccCCCCcHHHH----HHHHHhhhhCCCeEEE
Q 014212          223 HFTVCGDVHGQF--------YD----LLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVI----LTLFAFKCMCPSAIYL  286 (429)
Q Consensus       223 ~~~v~GDihG~~--------~~----l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~----~~l~~lk~~~p~~~~~  286 (429)
                      ++..++|+|-..        .+    +.++.+..... ..+.+++.||+.|++..+.+..    .++..|+. .+-.|++
T Consensus         2 kilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~-~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~-~~~~v~~   79 (407)
T PRK10966          2 RILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEH-QVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQQ-TGCQLVV   79 (407)
T ss_pred             EEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhc-CCCEEEECCccccCCCCcHHHHHHHHHHHHHHHh-cCCcEEE
Confidence            467888988321        11    22333332222 3456999999999986655443    33334442 2356899


Q ss_pred             ecCCccccc
Q 014212          287 SRGNHESKS  295 (429)
Q Consensus       287 lrGNhe~~~  295 (429)
                      +.||||...
T Consensus        80 I~GNHD~~~   88 (407)
T PRK10966         80 LAGNHDSVA   88 (407)
T ss_pred             EcCCCCChh
Confidence            999999653

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.11  E-value=0.26  Score=47.41  Aligned_cols=113  Identities=16%  Similarity=0.118  Sum_probs=78.8

Q ss_pred             cHhHHHHHHHHHHHHHH---hcCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHh---------hCHHHHHHHHHHHHH
Q 014212           10 SVSRAEELKALANEAFR---AKKYSQAIDLYSQA-IELNSQNAVYYANRAFAHTKL---------EEYGSAIQDASKAIE   76 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~---~g~~~~A~~~~~~a-l~~~p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~   76 (429)
                      -+++....+..|.++-+   .|+.++|+..+..+ ....+.+++.+..+|.+|..+         ...++|+.+|.++.+
T Consensus       175 ~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe  254 (374)
T PF13281_consen  175 VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE  254 (374)
T ss_pred             hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence            44556677788888888   89999999999994 455677889999999888653         236789999999998


Q ss_pred             hCCCChH---------------------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014212           77 IDPRYPK---------------------------------------------GYYRRGAAYLAMGKFKEALKDFQQVKKL  111 (429)
Q Consensus        77 ~~p~~~~---------------------------------------------~~~~la~~~~~~g~~~eA~~~~~~al~~  111 (429)
                      ++|+.-.                                             .+-.++.+..-.|++++|.+++++++++
T Consensus       255 ~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  255 IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            8764211                                             1223344555556677777777777777


Q ss_pred             CCCCHHHHHHH
Q 014212          112 SPNDPDAAQKV  122 (429)
Q Consensus       112 ~p~~~~~~~~l  122 (429)
                      .|........+
T Consensus       335 ~~~~W~l~St~  345 (374)
T PF13281_consen  335 KPPAWELESTL  345 (374)
T ss_pred             CCcchhHHHHH
Confidence            66655444333

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.10  E-value=0.0014  Score=60.72  Aligned_cols=83  Identities=22%  Similarity=0.310  Sum_probs=74.5

Q ss_pred             HHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHh
Q 014212           58 HTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEA  137 (429)
Q Consensus        58 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a  137 (429)
                      .+..|.++.|++.|..++.++|..+..|...|.++.++++...|+..|..|++++|+...-+...+.+++.++.  +++|
T Consensus       124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~--~e~a  201 (377)
T KOG1308|consen  124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN--WEEA  201 (377)
T ss_pred             HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhc--hHHH
Confidence            45578899999999999999999999999999999999999999999999999999999989999999999988  5555


Q ss_pred             hcCCc
Q 014212          138 IAVPE  142 (429)
Q Consensus       138 ~~~~~  142 (429)
                      ...++
T Consensus       202 a~dl~  206 (377)
T KOG1308|consen  202 AHDLA  206 (377)
T ss_pred             HHHHH
Confidence            54444

>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain

Probab=95.98  E-value=0.027  Score=52.07  Aligned_cols=71  Identities=14%  Similarity=0.037  Sum_probs=41.1

Q ss_pred             eEEEccCCCCH----------------HHHHHHHHHcC-CCCCCCCeEEccccccCCCCcH---HHHHHHHH-hhh-hCC
Q 014212          224 FTVCGDVHGQF----------------YDLLNIFELNG-LPSEENPYLFNGDFVDRGSFSV---EVILTLFA-FKC-MCP  281 (429)
Q Consensus       224 ~~v~GDihG~~----------------~~l~~~l~~~~-~~~~~~~~~~lGD~vdrG~~s~---e~~~~l~~-lk~-~~p  281 (429)
                      +.+++|.|-..                ..+..+++... ..+..+.++++||+++.|....   +....+.. ++. ..+
T Consensus         7 f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (262)
T cd07395           7 FIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLSLLDPD   86 (262)
T ss_pred             EEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHhhccCC
Confidence            67778888553                12344555442 2234456899999999887642   11122211 111 123


Q ss_pred             CeEEEecCCcccc
Q 014212          282 SAIYLSRGNHESK  294 (429)
Q Consensus       282 ~~~~~lrGNhe~~  294 (429)
                      -.++.+.||||..
T Consensus        87 vp~~~i~GNHD~~   99 (262)
T cd07395          87 IPLVCVCGNHDVG   99 (262)
T ss_pred             CcEEEeCCCCCCC
Confidence            4589999999974

CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.95  E-value=0.058  Score=50.15  Aligned_cols=102  Identities=14%  Similarity=0.068  Sum_probs=84.8

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCCHH---HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL-NSQNAV---YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK   83 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~   83 (429)
                      ...|.+.-++..--..++..|+...-...+++++.. +|+-|-   ..=.++.++...|-|++|.+..+++++++|.+.-
T Consensus       131 ~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~W  210 (491)
T KOG2610|consen  131 DDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCW  210 (491)
T ss_pred             HhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchH
Confidence            456777777777788889999999999999998877 666533   3334677788999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014212           84 GYYRRGAAYLAMGKFKEALKDFQQVK  109 (429)
Q Consensus        84 ~~~~la~~~~~~g~~~eA~~~~~~al  109 (429)
                      +....+.++...|+++++.++..+.-
T Consensus       211 a~Ha~aHVlem~~r~Keg~eFM~~te  236 (491)
T KOG2610|consen  211 ASHAKAHVLEMNGRHKEGKEFMYKTE  236 (491)
T ss_pred             HHHHHHHHHHhcchhhhHHHHHHhcc
Confidence            99999999999999999998876543

>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain

Probab=95.94  E-value=0.016  Score=50.38  Aligned_cols=66  Identities=17%  Similarity=0.160  Sum_probs=42.2

Q ss_pred             cCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHH-HHHHHHhhhhC---------------------CCeEEE
Q 014212          229 DVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEV-ILTLFAFKCMC---------------------PSAIYL  286 (429)
Q Consensus       229 DihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~-~~~l~~lk~~~---------------------p~~~~~  286 (429)
                      |++|+-.=|.++++...+...++.++||||++|.|--+-+- -......+..+                     .-.+++
T Consensus        24 d~~~~D~YL~~~~~~~~~~l~Pd~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~  103 (193)
T cd08164          24 DLFGNDYFLGHIVSMMQFWLKPDAVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLIN  103 (193)
T ss_pred             hhhhhHHHHHHHHHHHHHhcCCCEEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEE
Confidence            55666666677777665555556799999999988533322 23333332222                     246788


Q ss_pred             ecCCcccc
Q 014212          287 SRGNHESK  294 (429)
Q Consensus       287 lrGNhe~~  294 (429)
                      |.||||.-
T Consensus       104 V~GNHDIG  111 (193)
T cd08164         104 IAGNHDVG  111 (193)
T ss_pred             ECCcccCC
Confidence            99999984

Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the

>COG1409 Icc Predicted phosphohydrolases [General function prediction only]

Probab=95.93  E-value=0.029  Score=52.55  Aligned_cols=73  Identities=18%  Similarity=0.215  Sum_probs=48.3

Q ss_pred             ceEEEccCCCC------HHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhh--hhCCCeEEEecCCcccc
Q 014212          223 HFTVCGDVHGQ------FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFK--CMCPSAIYLSRGNHESK  294 (429)
Q Consensus       223 ~~~v~GDihG~------~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk--~~~p~~~~~lrGNhe~~  294 (429)
                      ++..+.|+|-.      ...+..+++....... +.+|+.||+.+.|.  .+-...+..+.  ...|..+++++||||.+
T Consensus         2 ~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~-D~~v~tGDl~~~~~--~~~~~~~~~~l~~~~~~~~~~~vpGNHD~~   78 (301)
T COG1409           2 RIAHISDLHLGALGVDSEELLEALLAAIEQLKP-DLLVVTGDLTNDGE--PEEYRRLKELLARLELPAPVIVVPGNHDAR   78 (301)
T ss_pred             eEEEEecCcccccccchHHHHHHHHHHHhcCCC-CEEEEccCcCCCCC--HHHHHHHHHHHhhccCCCceEeeCCCCcCC
Confidence            36788899966      3344556666664433 57999999999963  22222232222  25678899999999988


Q ss_pred             cchh
Q 014212          295 SMNK  298 (429)
Q Consensus       295 ~~~~  298 (429)
                      ....
T Consensus        79 ~~~~   82 (301)
T COG1409          79 VVNG   82 (301)
T ss_pred             chHH
Confidence            6653

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.92  E-value=0.16  Score=43.74  Aligned_cols=101  Identities=20%  Similarity=0.098  Sum_probs=74.1

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC--CChH--
Q 014212           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDP--RYPK--   83 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~--   83 (429)
                      .+-..++..+|..|.+.|+.++|++.|.++.+.....   ...++++-.+....+++..+.....++-.+-.  .+++  
T Consensus        33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~  112 (177)
T PF10602_consen   33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERR  112 (177)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHH
Confidence            3445678899999999999999999999987754442   45667777888888899988888888876532  2332  


Q ss_pred             --HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014212           84 --GYYRRGAAYLAMGKFKEALKDFQQVKKL  111 (429)
Q Consensus        84 --~~~~la~~~~~~g~~~eA~~~~~~al~~  111 (429)
                        ....-|..+...++|.+|-+.|-.+..-
T Consensus       113 nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t  142 (177)
T PF10602_consen  113 NRLKVYEGLANLAQRDFKEAAELFLDSLST  142 (177)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence              2344577777888898888888666543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain

Probab=95.91  E-value=0.02  Score=47.83  Aligned_cols=67  Identities=24%  Similarity=0.309  Sum_probs=48.1

Q ss_pred             EEEccCCCCHHHHHHHHHHc-CCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcc
Q 014212          225 TVCGDVHGQFYDLLNIFELN-GLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHE  292 (429)
Q Consensus       225 ~v~GDihG~~~~l~~~l~~~-~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe  292 (429)
                      .|+||+||+++.+..-++.. .....=+-++++||+-.-...+-+ +.-.+.=....|--.|++-||||
T Consensus         1 LV~G~~~G~l~~~~~kv~~~~~k~gpFd~~ic~Gdff~~~~~~~~-~~~y~~g~~~~pipTyf~ggn~~   68 (150)
T cd07380           1 LVCGDVNGRLKALFEKVNTINKKKGPFDALLCVGDFFGDDEDDEE-LEAYKDGSKKVPIPTYFLGGNNP   68 (150)
T ss_pred             CeeecCCccHHHHHHHHHHHhcccCCeeEEEEecCccCCccchhh-HHHHhcCCccCCCCEEEECCCCC
Confidence            37899999999998866653 222233468999999986666533 44444445567888999999998

CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site

>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.87  E-value=0.034  Score=49.40  Aligned_cols=101  Identities=22%  Similarity=0.343  Sum_probs=56.0

Q ss_pred             EEccCCCC-----H-HHHHHHHHHcCCCCCCCCeEEcccccc----CCCC---cHHHHHHHHHhhhhCCCeEEEecCCcc
Q 014212          226 VCGDVHGQ-----F-YDLLNIFELNGLPSEENPYLFNGDFVD----RGSF---SVEVILTLFAFKCMCPSAIYLSRGNHE  292 (429)
Q Consensus       226 v~GDihG~-----~-~~l~~~l~~~~~~~~~~~~~~lGD~vd----rG~~---s~e~~~~l~~lk~~~p~~~~~lrGNhe  292 (429)
                      .|.|+|=.     . +.+...++.  .++..+.++++||++|    +.+.   -.+|...|..+ .....++|.+.||||
T Consensus         2 FISDlHL~~~~p~~t~~fl~Fl~~--~a~~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~-a~~G~~v~~i~GN~D   78 (237)
T COG2908           2 FISDLHLGPKRPALTAFFLDFLRE--EAAQADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRL-ARKGTRVYYIHGNHD   78 (237)
T ss_pred             eeeccccCCCCcHHHHHHHHHHHh--ccccCcEEEEechhhhhhhcCCcccHHHHHHHHHHHHH-HhcCCeEEEecCchH
Confidence            35677743     3 333444443  2234567999999985    2211   23455555444 345789999999999


Q ss_pred             cccchhhccchhhhhcccchHHHHHHHHHhccCccccee---cCeEEEEecCccCC
Q 014212          293 SKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVL---NQKVFVVHGGLFSV  345 (429)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~---~~~~~~vH~gi~~~  345 (429)
                      .. +...++-.               .-.+.-+|-..++   +.+++++||....+
T Consensus        79 fl-l~~~f~~~---------------~g~~~l~~~~~~~~l~g~~~Ll~HGD~f~t  118 (237)
T COG2908          79 FL-LGKRFAQE---------------AGGMTLLPDPIVLDLYGKRILLAHGDTFCT  118 (237)
T ss_pred             HH-HHHHHHhh---------------cCceEEcCcceeeeecCcEEEEEeCCcccc
Confidence            43 33332211               0012224433333   67999999987433

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.86  E-value=0.16  Score=42.44  Aligned_cols=86  Identities=15%  Similarity=0.156  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014212           49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA  128 (429)
Q Consensus        49 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~  128 (429)
                      ..+..+..+-...++.+++...+...-.+.|..++.-..-|.++...|++.+|+..++.+.+-.|..+.+.-.++.|+..
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~   90 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA   90 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            34556666777788999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHhHHH
Q 014212          129 VKKLKF  134 (429)
Q Consensus       129 ~~~~~~  134 (429)
                      +++..+
T Consensus        91 ~~D~~W   96 (160)
T PF09613_consen   91 LGDPSW   96 (160)
T ss_pred             cCChHH
Confidence            887543

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=95.85  E-value=0.29  Score=49.48  Aligned_cols=127  Identities=13%  Similarity=0.114  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC----------
Q 014212           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQN----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR----------   80 (429)
Q Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----------   80 (429)
                      ..|...|..|-..|+.+.|...++++++.+-..    +..|..-|..-++..+++.|++..++|......          
T Consensus       388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~  467 (835)
T KOG2047|consen  388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE  467 (835)
T ss_pred             hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence            567889999999999999999999999875432    678888998888899999999999998865211          


Q ss_pred             --------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCcc
Q 014212           81 --------YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPES  143 (429)
Q Consensus        81 --------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~  143 (429)
                              +...|..++......|-++.-...|++.+.+.=-.|..-.+.+..+..-  ..|+++...|++
T Consensus       468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh--~yfeesFk~YEr  536 (835)
T KOG2047|consen  468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEH--KYFEESFKAYER  536 (835)
T ss_pred             cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--HHHHHHHHHHHc
Confidence                    2346788888888999999999999999999888888887777665433  337777777773

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.65  E-value=0.25  Score=49.38  Aligned_cols=117  Identities=15%  Similarity=0.003  Sum_probs=92.5

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHH-HHHHHhCCCChHHHHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDA-SKAIEIDPRYPKGYYRR   88 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~-~~al~~~p~~~~~~~~l   88 (429)
                      +|+-.-+.. +...+...++...|......++..+|+++.+..++|.+....|....+...+ +.+....|++......+
T Consensus        64 ~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  142 (620)
T COG3914          64 NPELLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHL  142 (620)
T ss_pred             CHHHHHHHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhH
Confidence            333333333 5666777888888999999999999999999999999988877666555554 44899999988765555


Q ss_pred             ------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014212           89 ------GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK  127 (429)
Q Consensus        89 ------a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~  127 (429)
                            +.....+|+..+|....+++..+.|.++.+...+.....
T Consensus       143 ~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~  187 (620)
T COG3914         143 IRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQ  187 (620)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHH
Confidence                  888889999999999999999999999887766665533

>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain

Probab=95.63  E-value=0.032  Score=51.38  Aligned_cols=45  Identities=20%  Similarity=0.161  Sum_probs=28.2

Q ss_pred             CCeEEccccccCCCCc--------H---HHHHHHHHhhhhCCCeEEEecCCccccc
Q 014212          251 NPYLFNGDFVDRGSFS--------V---EVILTLFAFKCMCPSAIYLSRGNHESKS  295 (429)
Q Consensus       251 ~~~~~lGD~vdrG~~s--------~---e~~~~l~~lk~~~p~~~~~lrGNhe~~~  295 (429)
                      +.+|++||++|++...        .   +.+..+..+....+..++.++||||...
T Consensus        35 d~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~GNHD~~~   90 (256)
T cd07401          35 ALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKESSVINKEKWFDIRGNHDLFN   90 (256)
T ss_pred             CEEEEccccccccccCCCcccccHHHHHHHHHHHHHhCCCCcceEEEeCCCCCcCC
Confidence            4699999999987531        1   1222222222223567888999999853

TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.62  E-value=0.15  Score=45.42  Aligned_cols=91  Identities=19%  Similarity=0.162  Sum_probs=67.7

Q ss_pred             HHhcCHHHHHHHHHHHHHh----CCC---CHHHHHHHHHHHHHhhCHH-------HHHHHHHHHHHhCCC------ChHH
Q 014212           25 FRAKKYSQAIDLYSQAIEL----NSQ---NAVYYANRAFAHTKLEEYG-------SAIQDASKAIEIDPR------YPKG   84 (429)
Q Consensus        25 ~~~g~~~~A~~~~~~al~~----~p~---~~~~~~~lg~~~~~~g~~~-------~A~~~~~~al~~~p~------~~~~   84 (429)
                      -....+++|++.|.-|+-.    ...   -+..+..+|.+|..+++-+       .|++.|++|++....      ....
T Consensus        88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l  167 (214)
T PF09986_consen   88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL  167 (214)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence            3456788999999988752    222   2567888999999999844       566666666654321      2467


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 014212           85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPND  115 (429)
Q Consensus        85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~  115 (429)
                      .+.+|.++...|++++|..+|.+++.....+
T Consensus       168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s  198 (214)
T PF09986_consen  168 LYLIGELNRRLGNYDEAKRWFSRVIGSKKAS  198 (214)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence            8889999999999999999999999865443

>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain

Probab=95.59  E-value=0.029  Score=52.71  Aligned_cols=68  Identities=18%  Similarity=0.239  Sum_probs=38.4

Q ss_pred             ceEEEccCCC----CHHHHHHHHHHcCCCCCCCCeEEccccccCCCCc-----HHHHHHHHHhhhhCCCeEEEecCCccc
Q 014212          223 HFTVCGDVHG----QFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFS-----VEVILTLFAFKCMCPSAIYLSRGNHES  293 (429)
Q Consensus       223 ~~~v~GDihG----~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s-----~e~~~~l~~lk~~~p~~~~~lrGNhe~  293 (429)
                      ++.++||.|.    ....+..+.+.   ....+-++++||+++-+...     -..+..+-.+..  .--++.++||||.
T Consensus         6 ~f~v~gD~~~~~~~~~~~~~~l~~~---~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~~~--~~P~~~~~GNHD~   80 (294)
T cd00839           6 KFAVFGDMGQNTNNSTNTLDHLEKE---LGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPLAS--YVPYMVTPGNHEA   80 (294)
T ss_pred             EEEEEEECCCCCCCcHHHHHHHHhc---cCCccEEEEcCchhhhcCCccchhHHHHHHHHHHHHh--cCCcEEcCccccc
Confidence            5899999995    22333333332   22345689999999544322     222222222222  2347889999996


Q ss_pred             cc
Q 014212          294 KS  295 (429)
Q Consensus       294 ~~  295 (429)
                      ..
T Consensus        81 ~~   82 (294)
T cd00839          81 DY   82 (294)
T ss_pred             cc
Confidence            54

Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=95.48  E-value=0.24  Score=54.23  Aligned_cols=145  Identities=14%  Similarity=0.020  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC--ChHHHHHHHH
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--YPKGYYRRGA   90 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~   90 (429)
                      ....+..+..+|.+.+.+++|.++|++.++.--+....|..+|..+++..+-++|...+.+|++.-|.  +.+..-.-|+
T Consensus      1529 ~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1529 AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQ 1608 (1710)
T ss_pred             hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHH
Confidence            34578889999999999999999999999988888999999999999999999999999999999998  7778888899


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHH-----HHHhhcCCcccccccccccccccccc
Q 014212           91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK-----FEEAIAVPESERHSVADSIDYQSIEV  159 (429)
Q Consensus        91 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~-----~~~a~~~~~~~~~~~a~~~~~~~l~~  159 (429)
                      +-++.|+.+.+...|+-.+.-.|.-.+.|.-+.......+..+     |+.++..--  ....+...+.+.++.
T Consensus      1609 LEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l--~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL--SIKKMKFFFKKWLEY 1680 (1710)
T ss_pred             HHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC--ChhHhHHHHHHHHHH
Confidence            9999999999999999999999999999988777665544432     455544322  223333344444444

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=95.42  E-value=0.044  Score=50.32  Aligned_cols=88  Identities=8%  Similarity=0.043  Sum_probs=75.4

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 014212           37 YSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR-RGAAYLAMGKFKEALKDFQQVKKLSPND  115 (429)
Q Consensus        37 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~eA~~~~~~al~~~p~~  115 (429)
                      |.++....|+++..|...+.-..+.+-|.+.-..|..++..+|.+.+.|.. -+.-+...++++.|...|.++++++|++
T Consensus        96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~  175 (435)
T COG5191          96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS  175 (435)
T ss_pred             eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence            445555678899999999888888889999999999999999999999987 4566778899999999999999999999


Q ss_pred             HHHHHHHHH
Q 014212          116 PDAAQKVKE  124 (429)
Q Consensus       116 ~~~~~~l~~  124 (429)
                      |..|...-.
T Consensus       176 p~iw~eyfr  184 (435)
T COG5191         176 PRIWIEYFR  184 (435)
T ss_pred             chHHHHHHH
Confidence            988765543

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.35  E-value=0.51  Score=42.62  Aligned_cols=114  Identities=16%  Similarity=0.142  Sum_probs=97.5

Q ss_pred             HHHHHHHHh-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 014212           19 ALANEAFRA-KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL-EEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMG   96 (429)
Q Consensus        19 ~~a~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g   96 (429)
                      ....+-+.. ..-..|+..-..++.++|.+.++|..+-.++..+ .+..+-++++...++-+|.|-..|...-.+....|
T Consensus        47 ~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~  126 (318)
T KOG0530|consen   47 DYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLG  126 (318)
T ss_pred             HHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhc
Confidence            333333333 4557899999999999999999999888877665 57889999999999999999999999999999999


Q ss_pred             CHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Q 014212           97 KFK-EALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL  132 (429)
Q Consensus        97 ~~~-eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  132 (429)
                      +.. .-++..+.++..+..+--+|....-+.+..+..
T Consensus       127 d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~  163 (318)
T KOG0530|consen  127 DPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDY  163 (318)
T ss_pred             CcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhH
Confidence            888 889999999999999999999999988888873

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.33  E-value=0.3  Score=46.96  Aligned_cols=102  Identities=15%  Similarity=0.127  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---hhCHHHHHHHHHHHH-HhCCCChHHH
Q 014212           14 AEELKALANEAFRAKKYSQAIDLYSQAIEL----NSQNAVYYANRAFAHTK---LEEYGSAIQDASKAI-EIDPRYPKGY   85 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al-~~~p~~~~~~   85 (429)
                      ++...++=..|...++|+.-+...+..-.+    -++.....+.+|.++-+   .|+.++|++.+..++ ...+.+++.+
T Consensus       141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~  220 (374)
T PF13281_consen  141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL  220 (374)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence            445566666778888888887777776555    44566777888888888   889999999988844 4456678888


Q ss_pred             HHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCC
Q 014212           86 YRRGAAYLAM---------GKFKEALKDFQQVKKLSPND  115 (429)
Q Consensus        86 ~~la~~~~~~---------g~~~eA~~~~~~al~~~p~~  115 (429)
                      ..+|.+|-.+         ...++|+..|.++.+.+|+.
T Consensus       221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~  259 (374)
T PF13281_consen  221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY  259 (374)
T ss_pred             HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence            8888887654         23578999999999988754

>COG1408 Predicted phosphohydrolases [General function prediction only]

Probab=95.32  E-value=0.044  Score=51.03  Aligned_cols=73  Identities=21%  Similarity=0.300  Sum_probs=48.6

Q ss_pred             CCceEEEccCCCCHHH--HHHHHHH-cCCCCCCCCeEEccccccC--CCCcHHHHHHHHHhhhhCCCeEEEecCCccccc
Q 014212          221 GKHFTVCGDVHGQFYD--LLNIFEL-NGLPSEENPYLFNGDFVDR--GSFSVEVILTLFAFKCMCPSAIYLSRGNHESKS  295 (429)
Q Consensus       221 ~~~~~v~GDihG~~~~--l~~~l~~-~~~~~~~~~~~~lGD~vdr--G~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~  295 (429)
                      +.++.-+.|+|-....  ..+.+.. ....+  +-+++.|||+|+  -+....++..|..|+  .|-.+|++-||||...
T Consensus        44 ~~~iv~lSDlH~~~~~~~~~~~~~~i~~~~~--DlivltGD~~~~~~~~~~~~~~~~L~~L~--~~~gv~av~GNHd~~~  119 (284)
T COG1408          44 GLKIVQLSDLHSLPFREEKLALLIAIANELP--DLIVLTGDYVDGDRPPGVAALALFLAKLK--APLGVFAVLGNHDYGV  119 (284)
T ss_pred             CeEEEEeehhhhchhhHHHHHHHHHHHhcCC--CEEEEEeeeecCCCCCCHHHHHHHHHhhh--ccCCEEEEeccccccc
Confidence            4468888999976544  2222222 22222  668889999995  555666677777776  5678899999998654


Q ss_pred             ch
Q 014212          296 MN  297 (429)
Q Consensus       296 ~~  297 (429)
                      -.
T Consensus       120 ~~  121 (284)
T COG1408         120 DR  121 (284)
T ss_pred             cc
Confidence            43

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.30  E-value=0.24  Score=35.90  Aligned_cols=65  Identities=17%  Similarity=0.214  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH---HHHHHhhCHHHHHHHHHHHHHh
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRA---FAHTKLEEYGSAIQDASKAIEI   77 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg---~~~~~~g~~~~A~~~~~~al~~   77 (429)
                      .+......|..++.+.+.++|+..++++++..++.+..+..+|   .+|...|+|++++.+..+-+.+
T Consensus         5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556677788888888888888888888888777666555444   5677788888877776655543

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.24  E-value=0.027  Score=54.76  Aligned_cols=82  Identities=15%  Similarity=0.079  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---------CC---------CCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIEL---------NS---------QNAVYYANRAFAHTKLEEYGSAIQDASKA   74 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---------~p---------~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   74 (429)
                      ....+.++|.++++.|.|.-+..+|.+|++.         .|         ....+.++.|..|...|+.-.|.+||.++
T Consensus       282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a  361 (696)
T KOG2471|consen  282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA  361 (696)
T ss_pred             hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence            3456789999999999999999999999961         11         23578899999999999999999999999


Q ss_pred             HHhCCCChHHHHHHHHHHHH
Q 014212           75 IEIDPRYPKGYYRRGAAYLA   94 (429)
Q Consensus        75 l~~~p~~~~~~~~la~~~~~   94 (429)
                      +...-.+|..|.++|.|...
T Consensus       362 v~vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  362 VHVFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             HHHHhcCcHHHHHHHHHHHH
Confidence            99999999999999988764

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=95.21  E-value=0.16  Score=52.63  Aligned_cols=100  Identities=15%  Similarity=0.162  Sum_probs=80.1

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHhhCHHHHHHHH
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQA----------IELNS----------QNAVYYANRAFAHTKLEEYGSAIQDA   71 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~a----------l~~~p----------~~~~~~~~lg~~~~~~g~~~~A~~~~   71 (429)
                      .--..+++.|..+-..+|.+.|+++|+++          +.-+|          .+...|...|..+...|+.+.|+..|
T Consensus       856 HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y  935 (1416)
T KOG3617|consen  856 HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFY  935 (1416)
T ss_pred             ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHH
Confidence            33457889999999999999999999986          22233          35667778899889999999999999


Q ss_pred             HHHHHh---------------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014212           72 SKAIEI---------------------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL  111 (429)
Q Consensus        72 ~~al~~---------------------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~  111 (429)
                      ..|-.-                     ...+..+.|.+|..|...|++.+|+.+|.+|-.+
T Consensus       936 ~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf  996 (1416)
T KOG3617|consen  936 SSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF  996 (1416)
T ss_pred             HHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            987532                     2345668899999999999999999998887654

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.17  E-value=1  Score=40.33  Aligned_cols=129  Identities=19%  Similarity=0.137  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC------h
Q 014212           14 AEELKALANEAFRAKKYSQAIDLYSQAIEL-----NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY------P   82 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~   82 (429)
                      +.++-..|..+-....+.++..+|++|..+     .|+.+..-...+.-.....+.++|++.|++++.+--..      .
T Consensus        71 AKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~  150 (308)
T KOG1585|consen   71 AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF  150 (308)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence            345555666667778899999999999875     46655555555655677788999999999998764322      2


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           83 KGYYRRGAAYLAMGKFKEALKDFQQVKKL----SPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        83 ~~~~~la~~~~~~g~~~eA~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      +.+-..+.++....++.+|-..+.+-...    +..+......++.+...+-..++..|...+.
T Consensus       151 el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r  214 (308)
T KOG1585|consen  151 ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYR  214 (308)
T ss_pred             HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence            34555678889999999988887765433    3333444445555555555444555555544

>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain

Probab=95.08  E-value=0.029  Score=51.24  Aligned_cols=44  Identities=23%  Similarity=0.222  Sum_probs=27.9

Q ss_pred             CCCeEEccccccCCCC------------c----HHHHHHHHHhhhhCCCeEEEecCCccccc
Q 014212          250 ENPYLFNGDFVDRGSF------------S----VEVILTLFAFKCMCPSAIYLSRGNHESKS  295 (429)
Q Consensus       250 ~~~~~~lGD~vdrG~~------------s----~e~~~~l~~lk~~~p~~~~~lrGNhe~~~  295 (429)
                      .+.+|++||++|+...            .    .++..++..|.  ..-.|+++.||||...
T Consensus        36 ~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~--~~~~v~~ipGNHD~~~   95 (243)
T cd07386          36 VKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVP--SHIKIIIIPGNHDAVR   95 (243)
T ss_pred             ccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcc--cCCeEEEeCCCCCccc
Confidence            3579999999997310            1    12333333332  2467999999999753

The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera

>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain

Probab=95.03  E-value=0.042  Score=50.41  Aligned_cols=66  Identities=26%  Similarity=0.273  Sum_probs=42.0

Q ss_pred             eEEEccCCCCH---------HHHHHHHHHcCCCCCCCCeEEccccccCCCCcH-----HHHHHHHHhhhhCCCeEEEecC
Q 014212          224 FTVCGDVHGQF---------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSV-----EVILTLFAFKCMCPSAIYLSRG  289 (429)
Q Consensus       224 ~~v~GDihG~~---------~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~-----e~~~~l~~lk~~~p~~~~~lrG  289 (429)
                      ++.++|+||.+         ..+..+++......+..-++..||+++.++.+.     .++..+.++   .++  ++..|
T Consensus         3 i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~~---g~d--~~~~G   77 (252)
T cd00845           3 ILHTNDLHGHFEPAGGVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPSTATKGEANIELMNAL---GYD--AVTIG   77 (252)
T ss_pred             EEEecccccCccccCCcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchhccCCcHHHHHHHhc---CCC--EEeec
Confidence            78889999876         555666666543322334577899999888654     455555444   223  23459


Q ss_pred             Ccccc
Q 014212          290 NHESK  294 (429)
Q Consensus       290 Nhe~~  294 (429)
                      |||.-
T Consensus        78 NHe~d   82 (252)
T cd00845          78 NHEFD   82 (252)
T ss_pred             ccccc
Confidence            99953

This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.00  E-value=0.21  Score=45.52  Aligned_cols=78  Identities=22%  Similarity=0.302  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014212           49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE  126 (429)
Q Consensus        49 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~  126 (429)
                      ....++=.++.+.++++.|..+.++.+.++|.++.-+.-.|.+|.++|-+.-|++.++..++..|+.+.+........
T Consensus       182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~  259 (269)
T COG2912         182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL  259 (269)
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            334556677888999999999999999999999999999999999999999999999999999999998766555443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=94.97  E-value=0.27  Score=49.66  Aligned_cols=131  Identities=19%  Similarity=0.160  Sum_probs=93.7

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHHHhhCHHHHHHHHHH
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ------------------NAVYYANRAFAHTKLEEYGSAIQDASK   73 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~   73 (429)
                      +-+..|..-|..-++..+++.|++..++|...-..                  +...|..++......|-++.-...|.+
T Consensus       423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr  502 (835)
T KOG2047|consen  423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR  502 (835)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            34677888888888899999999988888753111                  235677777777778888888888888


Q ss_pred             HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHH-HHHHHHHHHHhHHHHHhhcCCc
Q 014212           74 AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS--PNDPDAAQ-KVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        74 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~-~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      .+.+.-..|..-.+.|..+.+..-+++|.+.|++.+.+-  |.-.++|. .|-..-.+.|..+.+.|..+++
T Consensus       503 iidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFE  574 (835)
T KOG2047|consen  503 IIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFE  574 (835)
T ss_pred             HHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            888888888888888888888888889999998888876  34444443 2222233334334555555555

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=94.94  E-value=0.75  Score=43.86  Aligned_cols=105  Identities=7%  Similarity=-0.031  Sum_probs=78.1

Q ss_pred             CcccHhHHHHHHHHHHHHHHhc------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 014212            7 ENSSVSRAEELKALANEAFRAK------------KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKA   74 (429)
Q Consensus         7 ~~~~p~~~~~~~~~a~~~~~~g------------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   74 (429)
                      ...+|.+.++|..+...--..-            -.+..+..|++|++.+|++...+..+-.+..+.-+.++..+-++++
T Consensus        12 v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~   91 (321)
T PF08424_consen   12 VRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEEL   91 (321)
T ss_pred             HHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            3567888888887776544332            2456778899999999999988888888888888888888999999


Q ss_pred             HHhCCCChHHHHHHHHHHHH---cCCHHHHHHHHHHHHHh
Q 014212           75 IEIDPRYPKGYYRRGAAYLA---MGKFKEALKDFQQVKKL  111 (429)
Q Consensus        75 l~~~p~~~~~~~~la~~~~~---~g~~~eA~~~~~~al~~  111 (429)
                      +..+|.+...|..+-.....   .-.+++....|.++++.
T Consensus        92 l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~  131 (321)
T PF08424_consen   92 LFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA  131 (321)
T ss_pred             HHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence            99999988887665433332   23466777777777764

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.92  E-value=0.38  Score=49.56  Aligned_cols=110  Identities=18%  Similarity=0.155  Sum_probs=86.9

Q ss_pred             hHHHHHHHHHHHHHH-----hcCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHhh-----CHHHHHHHHHHH
Q 014212           12 SRAEELKALANEAFR-----AKKYSQAIDLYSQAIE-------LNSQNAVYYANRAFAHTKLE-----EYGSAIQDASKA   74 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~-----~g~~~~A~~~~~~al~-------~~p~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~a   74 (429)
                      ....+.+.+|.+++.     .+|.+.|+.+|+.+.+       ..  .+.+.+.+|.+|.+..     +.+.|+..|.++
T Consensus       242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~a  319 (552)
T KOG1550|consen  242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKA  319 (552)
T ss_pred             cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCCccccHHHHHHHHHHH
Confidence            345666677777764     4689999999999977       32  5567888999998853     678899999999


Q ss_pred             HHhCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014212           75 IEIDPRYPKGYYRRGAAYLAMG---KFKEALKDFQQVKKLSPNDPDAAQKVKECEK  127 (429)
Q Consensus        75 l~~~p~~~~~~~~la~~~~~~g---~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~  127 (429)
                      -..  .++.+.+.+|.++..-.   +...|.++|..|...  .+..+.+.++.++.
T Consensus       320 A~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~  371 (552)
T KOG1550|consen  320 AEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYE  371 (552)
T ss_pred             Hhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHH
Confidence            877  57889999999998766   567999999988875  56778888888764

>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]

Probab=94.88  E-value=0.051  Score=52.37  Aligned_cols=60  Identities=22%  Similarity=0.339  Sum_probs=42.1

Q ss_pred             HHHHHHHHHcCCCCCCCCeEEccccccCCCCc--HHHHHHHHHhhhhCC----CeEEEecCCcccc
Q 014212          235 YDLLNIFELNGLPSEENPYLFNGDFVDRGSFS--VEVILTLFAFKCMCP----SAIYLSRGNHESK  294 (429)
Q Consensus       235 ~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s--~e~~~~l~~lk~~~p----~~~~~lrGNhe~~  294 (429)
                      .-+.+.++...+...++..+||||++|-|.++  -|--.....+|..+|    ..++.+.||||.-
T Consensus        79 ~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~eEf~~~~~RfkkIf~~k~~~~~~~i~GNhDIG  144 (410)
T KOG3662|consen   79 WYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDEEFKKRYERFKKIFGRKGNIKVIYIAGNHDIG  144 (410)
T ss_pred             HHHHHHHHHHHhccCCCEEEEeccccccCccCChHHHHHHHHHHHHhhCCCCCCeeEEeCCccccc
Confidence            33455666666666667899999999999874  444455555555554    4788889999954

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=94.76  E-value=0.59  Score=38.51  Aligned_cols=87  Identities=13%  Similarity=-0.016  Sum_probs=70.7

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA   91 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~   91 (429)
                      .-...+...........+.+++...+...--+.|+.+..-..-|.++...|++.+|+..++...+-.+..+.+.-.++.|
T Consensus         8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C   87 (153)
T TIGR02561         8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC   87 (153)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence            34456666677777788888888888877778888888888888888888999999988888888777778888888888


Q ss_pred             HHHcCCH
Q 014212           92 YLAMGKF   98 (429)
Q Consensus        92 ~~~~g~~   98 (429)
                      +..+|+.
T Consensus        88 L~al~Dp   94 (153)
T TIGR02561        88 LNAKGDA   94 (153)
T ss_pred             HHhcCCh
Confidence            8888875

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.72  E-value=0.39  Score=41.44  Aligned_cols=88  Identities=19%  Similarity=0.050  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Q 014212           51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND-PDAAQKVKECE  126 (429)
Q Consensus        51 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~l~~~~  126 (429)
                      -..++..+...+++++|+..++.++....+.   +-+-.+||.+...+|++++|+..+...-.  ++. +..-...|.++
T Consensus        92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDil  169 (207)
T COG2976          92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDIL  169 (207)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHH
Confidence            4567888999999999999999998653331   34568899999999999999988764322  111 22245667777


Q ss_pred             HHHHhHHHHHhhcCCc
Q 014212          127 KAVKKLKFEEAIAVPE  142 (429)
Q Consensus       127 ~~~~~~~~~~a~~~~~  142 (429)
                      ...|+  -.+|...|+
T Consensus       170 l~kg~--k~~Ar~ay~  183 (207)
T COG2976         170 LAKGD--KQEARAAYE  183 (207)
T ss_pred             HHcCc--hHHHHHHHH
Confidence            77776  456666666

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=94.70  E-value=1.1  Score=41.92  Aligned_cols=107  Identities=19%  Similarity=0.139  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhh-------CHHHHHHHHHHHHHhCCC
Q 014212           13 RAEELKALANEAFR----AKKYSQAIDLYSQAIELNSQN-AVYYANRAFAHTKLE-------EYGSAIQDASKAIEIDPR   80 (429)
Q Consensus        13 ~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g-------~~~~A~~~~~~al~~~p~   80 (429)
                      .+.+.+.+|..+..    ..+..+|..+|++|.+..-.. ..+...+|.+|..-.       +...|...|.++-...  
T Consensus       108 ~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--  185 (292)
T COG0790         108 LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--  185 (292)
T ss_pred             cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--
Confidence            34566677777776    447888888888887764433 344667777766541       2336777777777664  


Q ss_pred             ChHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014212           81 YPKGYYRRGAAYLAM----GKFKEALKDFQQVKKLSPNDPDAAQKVK  123 (429)
Q Consensus        81 ~~~~~~~la~~~~~~----g~~~eA~~~~~~al~~~p~~~~~~~~l~  123 (429)
                      ++.+.+.+|.+|..-    .++.+|..+|.+|-+...  ..+.+.++
T Consensus       186 ~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~  230 (292)
T COG0790         186 NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG  230 (292)
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence            677778888777542    367788888888888765  66666666

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.67  E-value=0.085  Score=32.92  Aligned_cols=29  Identities=24%  Similarity=0.428  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014212           83 KGYYRRGAAYLAMGKFKEALKDFQQVKKL  111 (429)
Q Consensus        83 ~~~~~la~~~~~~g~~~eA~~~~~~al~~  111 (429)
                      .++.++|.+|..+|++++|...+++++++
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            46777888888888888888888888775

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.66  E-value=0.08  Score=33.04  Aligned_cols=28  Identities=32%  Similarity=0.508  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 014212           15 EELKALANEAFRAKKYSQAIDLYSQAIE   42 (429)
Q Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~   42 (429)
                      .++.++|..|..+|++++|+.+++++++
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            3444555555555555555555555444

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=94.58  E-value=0.72  Score=43.99  Aligned_cols=91  Identities=8%  Similarity=0.035  Sum_probs=76.4

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhhC------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH
Q 014212           34 IDLYSQAIELNSQNAVYYANRAFAHTKLEE------------YGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEA  101 (429)
Q Consensus        34 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA  101 (429)
                      ...|++.++.+|.+..+|..+....-..-.            .+..+..+++|++.+|++...+..+-.+..+....++.
T Consensus         5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l   84 (321)
T PF08424_consen    5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKL   84 (321)
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Confidence            356889999999999999998766444322            45678899999999999999999888888899999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHH
Q 014212          102 LKDFQQVKKLSPNDPDAAQKVKE  124 (429)
Q Consensus       102 ~~~~~~al~~~p~~~~~~~~l~~  124 (429)
                      ..-+++++..+|+++..|...-.
T Consensus        85 ~~~we~~l~~~~~~~~LW~~yL~  107 (321)
T PF08424_consen   85 AKKWEELLFKNPGSPELWREYLD  107 (321)
T ss_pred             HHHHHHHHHHCCCChHHHHHHHH
Confidence            99999999999999988765543

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=94.39  E-value=0.44  Score=51.52  Aligned_cols=111  Identities=15%  Similarity=0.184  Sum_probs=85.8

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhh-------CHHHHHHHHHHHHHhCCCChHHHHH
Q 014212           18 KALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLE-------EYGSAIQDASKAIEIDPRYPKGYYR   87 (429)
Q Consensus        18 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~   87 (429)
                      ....+++...+.|++|+..|++.-.--|.-   ..+.+..|.......       .+.+|+..|++... .|.-|--|..
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  557 (932)
T PRK13184        479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLG  557 (932)
T ss_pred             ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHh
Confidence            344567888899999999999999888764   567788887766532       47778888776543 3566667888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014212           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV  129 (429)
Q Consensus        88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~  129 (429)
                      .|.+|..+|+++|-+++|..|++..|.+|..-.....+..++
T Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  599 (932)
T PRK13184        558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRL  599 (932)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence            899999999999999999999999999988655544444333

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=94.12  E-value=0.41  Score=43.63  Aligned_cols=75  Identities=21%  Similarity=0.295  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 014212           16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA   90 (429)
Q Consensus        16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~   90 (429)
                      ...++=..+...++++.|...-++.+.++|.++.-+.-.|.+|.++|.+..|++.++..++.-|+.+.+-.-.+.
T Consensus       183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~  257 (269)
T COG2912         183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence            344556678889999999999999999999999999999999999999999999999999999998877554443

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=94.11  E-value=0.29  Score=48.91  Aligned_cols=102  Identities=15%  Similarity=0.196  Sum_probs=86.0

Q ss_pred             HHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 014212           16 ELKALANEAF-RAKKYSQAIDLYSQAIELNSQN--AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (429)
Q Consensus        16 ~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   92 (429)
                      .+..++..|+ .+|+..+|+.++..++-..|..  -.++..+|.++.++|...+|--.+..|+.-.|.....++-+|.++
T Consensus       214 ~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~  293 (886)
T KOG4507|consen  214 VLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIY  293 (886)
T ss_pred             HHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHH
Confidence            3444555554 5789999999999999987774  356788999999999999998888888888787778899999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHH
Q 014212           93 LAMGKFKEALKDFQQVKKLSPNDPD  117 (429)
Q Consensus        93 ~~~g~~~eA~~~~~~al~~~p~~~~  117 (429)
                      ..++.+.....+|..+.+..|....
T Consensus       294 aml~~~N~S~~~ydha~k~~p~f~q  318 (886)
T KOG4507|consen  294 AMLGEYNHSVLCYDHALQARPGFEQ  318 (886)
T ss_pred             HHHhhhhhhhhhhhhhhccCcchhH
Confidence            9999999999999999999886543

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.04  E-value=0.69  Score=44.42  Aligned_cols=102  Identities=13%  Similarity=0.132  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CC-------------------------C------CHHHHHHHHHHH
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIEL---NS-------------------------Q------NAVYYANRAFAH   58 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p-------------------------~------~~~~~~~lg~~~   58 (429)
                      .+...+..+..+...|+..+|+..++..++.   .+                         .      .+.++..+|...
T Consensus       183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~  262 (352)
T PF02259_consen  183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL  262 (352)
T ss_pred             CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence            5778888999999999999999999988871   11                         0      134566667766


Q ss_pred             HHh------hCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHHhCCC
Q 014212           59 TKL------EEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKF-----------------KEALKDFQQVKKLSPN  114 (429)
Q Consensus        59 ~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-----------------~eA~~~~~~al~~~p~  114 (429)
                      ...      ++.++++..|+++++++|....+|+.+|..+...=+.                 ..|+..|-+|+.+.+.
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            667      7888999999999999999999999999877755221                 3488888888888877

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=93.92  E-value=0.7  Score=37.35  Aligned_cols=79  Identities=14%  Similarity=0.217  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHHhc---CHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212           13 RAEELKALANEAFRAK---KYSQAIDLYSQAIE-LNSQ-NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g---~~~~A~~~~~~al~-~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   87 (429)
                      ..+..+++|..+.+..   +.++.+..++..++ ..|. .-...+.++..++++++|+.|+.+.+..++.+|+|.++.-.
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            4566788888888665   45678889999986 4454 34566788999999999999999999999999999888654


Q ss_pred             HHHH
Q 014212           88 RGAA   91 (429)
Q Consensus        88 la~~   91 (429)
                      .-.+
T Consensus       111 k~~i  114 (149)
T KOG3364|consen  111 KETI  114 (149)
T ss_pred             HHHH
Confidence            4333

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=93.92  E-value=0.85  Score=37.61  Aligned_cols=83  Identities=12%  Similarity=0.081  Sum_probs=72.3

Q ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212           52 ANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (429)
Q Consensus        52 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  131 (429)
                      .....+-...++.+++...+...--+.|+.++.-..-|.++...|++.+|+..++...+-.+..+-..-.++.|+..+++
T Consensus        14 i~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D   93 (153)
T TIGR02561        14 IEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD   93 (153)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence            33444445588999999999988899999999999999999999999999999999999888889999999999988887


Q ss_pred             HHH
Q 014212          132 LKF  134 (429)
Q Consensus       132 ~~~  134 (429)
                      ..+
T Consensus        94 p~W   96 (153)
T TIGR02561        94 AEW   96 (153)
T ss_pred             hHH
Confidence            653

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=93.89  E-value=2.7  Score=42.43  Aligned_cols=126  Identities=10%  Similarity=0.066  Sum_probs=108.9

Q ss_pred             CCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-CCChHH
Q 014212            6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-PRYPKG   84 (429)
Q Consensus         6 ~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~   84 (429)
                      ...-++.+...|......-...|+++...-.|++++--.......|.+.+......|+.+-|-..+.++.++. |+.+..
T Consensus       289 vkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i  368 (577)
T KOG1258|consen  289 VKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPII  368 (577)
T ss_pred             cCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHH
Confidence            3445677778888888889999999999999999999999999999999999999999999998888888765 566777


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212           85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (429)
Q Consensus        85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  131 (429)
                      +..-+..-...|+++.|...+++..+--|...++-..........++
T Consensus       369 ~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~  415 (577)
T KOG1258|consen  369 HLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGN  415 (577)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcc
Confidence            88888888899999999999999998889988877777666666666

>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]

Probab=93.82  E-value=0.18  Score=49.62  Aligned_cols=71  Identities=18%  Similarity=0.154  Sum_probs=46.7

Q ss_pred             eEEEccCCCC-------------HHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhC---CCeEEEe
Q 014212          224 FTVCGDVHGQ-------------FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMC---PSAIYLS  287 (429)
Q Consensus       224 ~~v~GDihG~-------------~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~---p~~~~~l  287 (429)
                      +..+.|.|=.             +..+..+++.+... ..+-+|.-||+-|++.-|.+++..+...-..-   .-.||+|
T Consensus         3 ilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~-~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I   81 (390)
T COG0420           3 ILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEE-KVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVI   81 (390)
T ss_pred             eEEecccccchhhccCccchHHHHHHHHHHHHHHHHc-cCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEEe
Confidence            5666777743             23333344443322 23568999999999988888887775554332   2479999


Q ss_pred             cCCccccc
Q 014212          288 RGNHESKS  295 (429)
Q Consensus       288 rGNhe~~~  295 (429)
                      .||||...
T Consensus        82 ~GNHD~~~   89 (390)
T COG0420          82 AGNHDSPS   89 (390)
T ss_pred             cCCCCchh
Confidence            99999654

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.71  E-value=1.5  Score=43.17  Aligned_cols=131  Identities=16%  Similarity=0.060  Sum_probs=96.6

Q ss_pred             hHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHH-HhhCHHHHHHHHHHHHHhC---CCC-
Q 014212           12 SRAEELKALANEAFRAK--KYSQAIDLYSQAIELNSQN---AVYYANRAFAHT-KLEEYGSAIQDASKAIEID---PRY-   81 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~---p~~-   81 (429)
                      .-+.++..+|..+...|  +..+++++++..+...|.+   +.....+|.+++ -..+++.|...+++|..+.   |.+ 
T Consensus         5 Ava~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fy   84 (629)
T KOG2300|consen    5 AVAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFY   84 (629)
T ss_pred             HHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHH
Confidence            34678889999999999  8899999999998887775   455666777654 4688999999999998764   333 


Q ss_pred             ---hHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHhHHHHHhhcCCccc
Q 014212           82 ---PKGYYRRGAAYLAMG-KFKEALKDFQQVKKLSPNDPDA----AQKVKECEKAVKKLKFEEAIAVPESE  144 (429)
Q Consensus        82 ---~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~p~~~~~----~~~l~~~~~~~~~~~~~~a~~~~~~~  144 (429)
                         -.+.-.|+.+|.... .+..|...+++|+++....|-.    .+.++.++..-+  ++.-|++..+.+
T Consensus        85 dvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idk--D~~sA~elLavg  153 (629)
T KOG2300|consen   85 DVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDK--DFPSALELLAVG  153 (629)
T ss_pred             hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhc--cchhHHHHHhcc
Confidence               245666888888777 7889999999999998887743    344444444333  366777665533

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.60  E-value=0.29  Score=50.59  Aligned_cols=119  Identities=32%  Similarity=0.456  Sum_probs=100.1

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHhCCCChHH
Q 014212           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ----NAVYYANRAFAHTKL--EEYGSAIQDASKAIEIDPRYPKG   84 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~   84 (429)
                      ...+......++.++..+++..|..-|..++.+-|.    .+....+.+.|++++  ++|..++....-|+...|....+
T Consensus        50 l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~  129 (748)
T KOG4151|consen   50 LSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKA  129 (748)
T ss_pred             HHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHH
Confidence            345566778899999999999999999999988874    456677888888765  69999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014212           85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV  129 (429)
Q Consensus        85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~  129 (429)
                      ++..+.+|...++++-|++...-.....|.+..+..-+...+..+
T Consensus       130 Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll  174 (748)
T KOG4151|consen  130 LLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL  174 (748)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence            999999999999999999998888888999977766555555444

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.57  E-value=1.3  Score=45.78  Aligned_cols=105  Identities=19%  Similarity=0.168  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHhc-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh---CHHHHHHHHHHHHHhCCCChHHHHH
Q 014212           16 ELKALANEAFRAK-----KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE---EYGSAIQDASKAIEIDPRYPKGYYR   87 (429)
Q Consensus        16 ~~~~~a~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~   87 (429)
                      +.+.+|..|.+..     +++.|+.+|.++.+..  ++.+.+.+|.++....   ++..|.++|..|...  .+..+.++
T Consensus       290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~  365 (552)
T KOG1550|consen  290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYR  365 (552)
T ss_pred             cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHH
Confidence            5667788888743     7889999999998754  4556778888887665   678999999998765  78999999


Q ss_pred             HHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014212           88 RGAAYLAM----GKFKEALKDFQQVKKLSPNDPDAAQKVKECE  126 (429)
Q Consensus        88 la~~~~~~----g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~  126 (429)
                      +|.+|..-    -+...|..++.++-+..  ++.+.+.++..+
T Consensus       366 la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~  406 (552)
T KOG1550|consen  366 LALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFY  406 (552)
T ss_pred             HHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHH
Confidence            99999754    36789999999999987  556666665544

>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]

Probab=93.55  E-value=0.24  Score=43.63  Aligned_cols=74  Identities=19%  Similarity=0.196  Sum_probs=52.0

Q ss_pred             CceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccc--cCCCCcHHHHHH-HHHhhhhCCCeEEEecCCcccccch
Q 014212          222 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFV--DRGSFSVEVILT-LFAFKCMCPSAIYLSRGNHESKSMN  297 (429)
Q Consensus       222 ~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~v--drG~~s~e~~~~-l~~lk~~~p~~~~~lrGNhe~~~~~  297 (429)
                      .++..+.|+||..+.+.+++...... ..+.+++.||+.  ..|+.-...-.. +-.++. .-..|+.++||.|...+.
T Consensus         4 mkil~vtDlHg~~~~~~k~~~~~~~~-~~D~lviaGDlt~~~~~~~~~~~~~~~~e~l~~-~~~~v~avpGNcD~~~v~   80 (226)
T COG2129           4 MKILAVTDLHGSEDSLKKLLNAAADI-RADLLVIAGDLTYFHFGPKEVAEELNKLEALKE-LGIPVLAVPGNCDPPEVI   80 (226)
T ss_pred             ceEEEEeccccchHHHHHHHHHHhhc-cCCEEEEecceehhhcCchHHHHhhhHHHHHHh-cCCeEEEEcCCCChHHHH
Confidence            35888999999999999988876543 344688899999  888753322221 333332 347899999999966543

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.52  E-value=0.26  Score=44.40  Aligned_cols=121  Identities=13%  Similarity=0.121  Sum_probs=72.8

Q ss_pred             CcccHhHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 014212            7 ENSSVSRAEELKALANEAFRAKKYS-QAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY   85 (429)
Q Consensus         7 ~~~~p~~~~~~~~~a~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~   85 (429)
                      ++++|++-+.|...-.+.-..|++. .-++..++++..+..+..+|..+-.+....++++.-+++..+.++.|-.|-.||
T Consensus       105 ~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAW  184 (318)
T KOG0530|consen  105 IEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAW  184 (318)
T ss_pred             HHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchh
Confidence            3455666666666666666666655 556666666666666666666666666666666666666666666666555555


Q ss_pred             HHHHHHHHH-cC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014212           86 YRRGAAYLA-MG-----KFKEALKDFQQVKKLSPNDPDAAQKVKECEK  127 (429)
Q Consensus        86 ~~la~~~~~-~g-----~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~  127 (429)
                      ...--+... .|     ..+.-+.+..+.+.+.|+|..+|..|..++.
T Consensus       185 N~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~  232 (318)
T KOG0530|consen  185 NQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLE  232 (318)
T ss_pred             heeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Confidence            443221111 11     1234556666677777777777777766553

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=93.50  E-value=0.28  Score=45.46  Aligned_cols=62  Identities=16%  Similarity=0.086  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014212           67 AIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA  128 (429)
Q Consensus        67 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~  128 (429)
                      |..+|.+|+.+.|++..+|+.+|.++...|+.-+|+-+|-|++...--.+.+..++......
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            67788888888888888888888888888888888888888886655557777777766544

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=93.32  E-value=0.33  Score=29.60  Aligned_cols=32  Identities=19%  Similarity=0.283  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCC
Q 014212           83 KGYYRRGAAYLAMGKFKEALKD--FQQVKKLSPN  114 (429)
Q Consensus        83 ~~~~~la~~~~~~g~~~eA~~~--~~~al~~~p~  114 (429)
                      +.++.+|..+..+|++++|+..  |.-+..+++.
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            3455566666666666666666  3355555544

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=93.30  E-value=1.2  Score=35.12  Aligned_cols=68  Identities=18%  Similarity=0.133  Sum_probs=53.1

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------hCCCCH----HHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIE-------LNSQNA----VYYANRAFAHTKLEEYGSAIQDASKAIEI   77 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-------~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~   77 (429)
                      +--++-.+-.++..+...|+|++++..-.+++.       ++.+..    .+-+++|.++..+|+.++|+..|+.+-++
T Consensus        51 ~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   51 DGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            344667788899999999999999888888875       455543    44578899999999999999999998764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]

Probab=93.19  E-value=0.25  Score=44.18  Aligned_cols=77  Identities=19%  Similarity=0.160  Sum_probs=47.0

Q ss_pred             ceEEEccCCCCHHHHH----------------HHHHHcCCCCCCCCeEEccccccCCCC-----cHHHHHHHHHhhhhCC
Q 014212          223 HFTVCGDVHGQFYDLL----------------NIFELNGLPSEENPYLFNGDFVDRGSF-----SVEVILTLFAFKCMCP  281 (429)
Q Consensus       223 ~~~v~GDihG~~~~l~----------------~~l~~~~~~~~~~~~~~lGD~vdrG~~-----s~e~~~~l~~lk~~~p  281 (429)
                      +..|+.|+|=.+....                +.+...=.....+.+|++||+-.-.+.     ..++-.++-.++..  
T Consensus        21 ~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~~~--   98 (235)
T COG1407          21 RTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKSLRQEKEEVREFLELLDER--   98 (235)
T ss_pred             cEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCccccccCccccccHHHHHHHHHHhccC--
Confidence            5899999996655443                222211011123469999999743332     35555555444432  


Q ss_pred             CeEEEecCCcccccchhhccc
Q 014212          282 SAIYLSRGNHESKSMNKIYGF  302 (429)
Q Consensus       282 ~~~~~lrGNhe~~~~~~~~~~  302 (429)
                       .+++++||||...-.-..++
T Consensus        99 -evi~i~GNHD~~i~~~~~~~  118 (235)
T COG1407          99 -EVIIIRGNHDNGIEEILPGF  118 (235)
T ss_pred             -cEEEEeccCCCccccccccC
Confidence             48999999998876665554

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=93.16  E-value=1  Score=40.14  Aligned_cols=81  Identities=16%  Similarity=0.033  Sum_probs=58.7

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHH-------HHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQ-------AIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASKAI   75 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~-------A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al   75 (429)
                      .....+..+..+|..|-..++-+.       |++.|.++++....      ...+.+.+|.+..+.|++++|..+|.+++
T Consensus       113 ~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi  192 (214)
T PF09986_consen  113 KPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVI  192 (214)
T ss_pred             CHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            344678888999999999998554       55566666554322      25778899999999999999999999999


Q ss_pred             HhCCCCh-HHHHHHH
Q 014212           76 EIDPRYP-KGYYRRG   89 (429)
Q Consensus        76 ~~~p~~~-~~~~~la   89 (429)
                      .....+. .....+|
T Consensus       193 ~~~~~s~~~~l~~~A  207 (214)
T PF09986_consen  193 GSKKASKEPKLKDMA  207 (214)
T ss_pred             cCCCCCCcHHHHHHH
Confidence            8643332 2444444

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=93.14  E-value=1.1  Score=34.89  Aligned_cols=72  Identities=13%  Similarity=0.057  Sum_probs=58.6

Q ss_pred             HHHHHHHhhCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHcCCH-----------HHHHHHHHHHHHhCCCCHHHH
Q 014212           54 RAFAHTKLEEYGSAIQDASKAIEIDPRYP---KGYYRRGAAYLAMGKF-----------KEALKDFQQVKKLSPNDPDAA  119 (429)
Q Consensus        54 lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~-----------~eA~~~~~~al~~~p~~~~~~  119 (429)
                      +|.-+++.|++-+|++..+..+...+++.   ..+..-|.++..+...           -.|+++|.++..+.|..+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            46778999999999999999999988766   4556668888766532           469999999999999998888


Q ss_pred             HHHHHH
Q 014212          120 QKVKEC  125 (429)
Q Consensus       120 ~~l~~~  125 (429)
                      +.++.-
T Consensus        82 ~~la~~   87 (111)
T PF04781_consen   82 FELASQ   87 (111)
T ss_pred             HHHHHH
Confidence            777765

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=93.12  E-value=0.17  Score=46.66  Aligned_cols=83  Identities=13%  Similarity=0.211  Sum_probs=72.7

Q ss_pred             CCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 014212            6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYAN-RAFAHTKLEEYGSAIQDASKAIEIDPRYPKG   84 (429)
Q Consensus         6 ~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~   84 (429)
                      .+..-+.++..|...+....+.|-|.+--..|.++++..|.++..|.. -+.-+...++++.+...|.++++++|++|..
T Consensus        99 ~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~i  178 (435)
T COG5191          99 STNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRI  178 (435)
T ss_pred             hhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchH
Confidence            355667888899999999999999999999999999999999999976 4556778899999999999999999999988


Q ss_pred             HHHH
Q 014212           85 YYRR   88 (429)
Q Consensus        85 ~~~l   88 (429)
                      |+..
T Consensus       179 w~ey  182 (435)
T COG5191         179 WIEY  182 (435)
T ss_pred             HHHH
Confidence            7654

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.08  E-value=1.4  Score=42.37  Aligned_cols=103  Identities=15%  Similarity=0.125  Sum_probs=84.7

Q ss_pred             hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC----HHH
Q 014212           27 AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE--EYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGK----FKE  100 (429)
Q Consensus        27 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----~~e  100 (429)
                      +.-.++-+.+...+++.+|++..+|+.+..++.+.+  ++..-++.++++++.||.|-.+|...-.+......    ..+
T Consensus        88 ~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~  167 (421)
T KOG0529|consen   88 QALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKE  167 (421)
T ss_pred             HHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchh
Confidence            335677788899999999999999999999998775  47888999999999999999998777655554433    467


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014212          101 ALKDFQQVKKLSPNDPDAAQKVKECEKAV  129 (429)
Q Consensus       101 A~~~~~~al~~~p~~~~~~~~l~~~~~~~  129 (429)
                      -+++..+++.-++.|-.+|.+...+...+
T Consensus       168 El~ftt~~I~~nfSNYsaWhyRs~lL~~l  196 (421)
T KOG0529|consen  168 ELEFTTKLINDNFSNYSAWHYRSLLLSTL  196 (421)
T ss_pred             HHHHHHHHHhccchhhhHHHHHHHHHHHh
Confidence            78889999999999999988887776543

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.06  E-value=0.93  Score=41.75  Aligned_cols=57  Identities=18%  Similarity=0.181  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014212           51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQ  107 (429)
Q Consensus        51 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~  107 (429)
                      -+.-+.-....+++.+|...+..++...|++.++...++.+|...|+.++|...+..
T Consensus       137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~  193 (304)
T COG3118         137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA  193 (304)
T ss_pred             HHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence            344556678899999999999999999999999999999999999999777665543

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=92.93  E-value=0.6  Score=35.52  Aligned_cols=55  Identities=13%  Similarity=0.279  Sum_probs=41.4

Q ss_pred             HHhhCHHHHHHHHHHHHHhCCC---------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 014212           59 TKLEEYGSAIQDASKAIEIDPR---------YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP  113 (429)
Q Consensus        59 ~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p  113 (429)
                      .+.|+|.+|++.+.+.......         ...+..++|.++...|++++|+..+++|+++..
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            4567777777666666554221         245678899999999999999999999998864

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=92.93  E-value=0.57  Score=35.66  Aligned_cols=58  Identities=28%  Similarity=0.349  Sum_probs=47.1

Q ss_pred             HHHHHhcCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC
Q 014212           22 NEAFRAKKYSQAIDLYSQAIELNSQ---------NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP   79 (429)
Q Consensus        22 ~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p   79 (429)
                      ....+.|+|.+|++.+.+.+.....         ...+..++|.++...|++++|+..++.|+++-.
T Consensus         6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            3456889999999998888764322         245678899999999999999999999998754

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=92.80  E-value=3  Score=40.83  Aligned_cols=124  Identities=14%  Similarity=0.181  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHH--HHHHHHH---------hCC--
Q 014212           14 AEELKALANEAFRAKK-YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQ--DASKAIE---------IDP--   79 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~--~~~~al~---------~~p--   79 (429)
                      +..+..-|..+.+.|. -++|+..++.+++..|.+...-. .-. .+-...|.+|+.  .+-+.+.         +.|  
T Consensus       379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n-~v~-~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~  456 (549)
T PF07079_consen  379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECEN-IVF-LFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPIT  456 (549)
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHH-HHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccc
Confidence            4556777888899988 88999999999998888764322 111 112222444332  1222222         122  


Q ss_pred             -CChHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           80 -RYPKGYYRR--GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        80 -~~~~~~~~l--a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                       .+.+.-..|  |.-++.+|+|.++.-+-.-..+.+| ++.++..+|.+....+.  |++|+.++.
T Consensus       457 i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~--Y~eA~~~l~  519 (549)
T PF07079_consen  457 ISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKR--YQEAWEYLQ  519 (549)
T ss_pred             ccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhh--HHHHHHHHH
Confidence             233433444  3456688888888888888888888 78888888888766665  788887654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.78  E-value=0.25  Score=30.50  Aligned_cols=29  Identities=21%  Similarity=0.401  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014212           83 KGYYRRGAAYLAMGKFKEALKDFQQVKKL  111 (429)
Q Consensus        83 ~~~~~la~~~~~~g~~~eA~~~~~~al~~  111 (429)
                      ++|..||.+-...++|++|+..|++++++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            46777888888888888888888888775

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A

Probab=92.69  E-value=0.14  Score=45.14  Aligned_cols=72  Identities=15%  Similarity=0.174  Sum_probs=42.5

Q ss_pred             ceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHH--------------------------HHHHHh
Q 014212          223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVI--------------------------LTLFAF  276 (429)
Q Consensus       223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~--------------------------~~l~~l  276 (429)
                      ++..+.|.||.++.+.++.+...-. ..+-++|+||++-....+.|-.                          .++..|
T Consensus         7 kilA~s~~~g~~e~l~~l~~~~~e~-~~D~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~~ff~~L   85 (255)
T PF14582_consen    7 KILAISNFRGDFELLERLVEVIPEK-GPDAVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECYDSEALDKFFRIL   85 (255)
T ss_dssp             EEEEEE--TT-HHHHHHHHHHHHHH-T-SEEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHHHHHHHHHHHHHH
T ss_pred             hheeecCcchHHHHHHHHHhhcccc-CCCEEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhhhHHHHHHHHHHH
Confidence            5889999999999999988765322 2346999999986555544443                          333333


Q ss_pred             hhhCCCeEEEecCCcccccc
Q 014212          277 KCMCPSAIYLSRGNHESKSM  296 (429)
Q Consensus       277 k~~~p~~~~~lrGNhe~~~~  296 (429)
                       -..+--+++++||||....
T Consensus        86 -~~~~~p~~~vPG~~Dap~~  104 (255)
T PF14582_consen   86 -GELGVPVFVVPGNMDAPER  104 (255)
T ss_dssp             -HCC-SEEEEE--TTS-SHH
T ss_pred             -HhcCCcEEEecCCCCchHH
Confidence             3356778889999997543

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=92.59  E-value=0.77  Score=45.19  Aligned_cols=77  Identities=12%  Similarity=0.116  Sum_probs=65.5

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHhCCCChHHHHH
Q 014212           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE-YGSAIQDASKAIEIDPRYPKGYYR   87 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~   87 (429)
                      +.+...|........+.+.+.+--..|.+++...|+++..|..-|.-.+..+. .+.|...+.++++.+|+++..|..
T Consensus       102 ~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~e  179 (568)
T KOG2396|consen  102 NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKE  179 (568)
T ss_pred             CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHH
Confidence            34566666666666677779999999999999999999999999988888776 999999999999999999987654

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.47  E-value=0.79  Score=42.31  Aligned_cols=80  Identities=24%  Similarity=0.282  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014212           30 YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVK  109 (429)
Q Consensus        30 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al  109 (429)
                      |..=+...+++++  .....++..++..+...|+++.+...+++.+.++|-+-..|..+-.+|...|+...|+..|++.-
T Consensus       137 f~~WV~~~R~~l~--e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~  214 (280)
T COG3629         137 FDEWVLEQRRALE--ELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK  214 (280)
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence            6666666666554  23467888999999999999999999999999999999999999999999999999999999888


Q ss_pred             Hh
Q 014212          110 KL  111 (429)
Q Consensus       110 ~~  111 (429)
                      +.
T Consensus       215 ~~  216 (280)
T COG3629         215 KT  216 (280)
T ss_pred             HH
Confidence            75

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=92.46  E-value=0.66  Score=45.37  Aligned_cols=119  Identities=16%  Similarity=0.136  Sum_probs=89.5

Q ss_pred             HHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH
Q 014212           22 NEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEA  101 (429)
Q Consensus        22 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA  101 (429)
                      ...+..|+...|-+-...+++..|.++..-...+.+...+|+|+.|.+...-+-..-..-..+.-.+-.....+|++++|
T Consensus       297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a  376 (831)
T PRK15180        297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA  376 (831)
T ss_pred             HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence            44567899999999999999999999999999999999999999999988777665555555666666777889999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212          102 LKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus       102 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      ...-.-.+...-+++++..--+....+++-  ++++...+.
T Consensus       377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~--~d~~~~~wk  415 (831)
T PRK15180        377 LSTAEMMLSNEIEDEEVLTVAAGSADALQL--FDKSYHYWK  415 (831)
T ss_pred             HHHHHHHhccccCChhheeeecccHHHHhH--HHHHHHHHH
Confidence            988888877666666655444443344443  455544433

>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain

Probab=92.39  E-value=0.19  Score=46.82  Aligned_cols=64  Identities=22%  Similarity=0.324  Sum_probs=37.1

Q ss_pred             eEEEccCCCCH----------------HHHHHHHHHcCCCCCCCCeEE-ccccccCCCCc-----------HHHHHHHHH
Q 014212          224 FTVCGDVHGQF----------------YDLLNIFELNGLPSEENPYLF-NGDFVDRGSFS-----------VEVILTLFA  275 (429)
Q Consensus       224 ~~v~GDihG~~----------------~~l~~~l~~~~~~~~~~~~~~-lGD~vdrG~~s-----------~e~~~~l~~  275 (429)
                      ++..+|+||.+                ..+..++++..... .+.+++ .||+++..+.+           ..++..+..
T Consensus         3 il~t~D~Hg~~~~~~~~~~~~~~~gg~~~l~~~i~~~r~~~-~~~l~ld~GD~~~gs~~~~~~~~~~~~~~~~~~~~ln~   81 (277)
T cd07410           3 ILATSDLHGNLLPYDYYTDKPDASGGLARVATLIKKARAEN-PNTLLIDNGDTIQGSPLADYYAKIEDGDPHPMIAAMNA   81 (277)
T ss_pred             EEEEeccccceeCccccCCCcCCccCHHHHHHHHHHHHhcC-CCeEEEeCCccCCccHHHHHhhhcccCCCChHHHHHHh
Confidence            67778888876                33555666554322 232333 69999866532           224455544


Q ss_pred             hhhhCCCeEEEecCCccc
Q 014212          276 FKCMCPSAIYLSRGNHES  293 (429)
Q Consensus       276 lk~~~p~~~~~lrGNhe~  293 (429)
                      +.   ++  ++..||||.
T Consensus        82 ~g---~d--~~~lGNHe~   94 (277)
T cd07410          82 LG---YD--AGTLGNHEF   94 (277)
T ss_pred             cC---CC--EEeecccCc
Confidence            43   33  445699995

CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=92.35  E-value=1.6  Score=37.62  Aligned_cols=65  Identities=12%  Similarity=0.054  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 014212           48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR---YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS  112 (429)
Q Consensus        48 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~  112 (429)
                      ..++..+|..|.+.|++++|+++|.++......   ..+.++++-.+....+++.....+..++-.+-
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~  103 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI  103 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            467889999999999999999999998775433   24567888888899999999999999988764

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=92.19  E-value=7.9  Score=36.00  Aligned_cols=102  Identities=14%  Similarity=0.063  Sum_probs=73.8

Q ss_pred             hHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh----CCC----------CHHHHHHHHHHHHHhhCHHH---HHHHHHH
Q 014212           12 SRAEELKALANEAFRAK-KYSQAIDLYSQAIEL----NSQ----------NAVYYANRAFAHTKLEEYGS---AIQDASK   73 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~----~p~----------~~~~~~~lg~~~~~~g~~~~---A~~~~~~   73 (429)
                      .-+..+++.|...+..+ +++.|+..++++.++    .+.          ....+..++.+|.+.+.++.   |.+..+.
T Consensus        33 ~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~  112 (278)
T PF08631_consen   33 ELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRL  112 (278)
T ss_pred             HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            44577899999999999 999999999999887    211          13456778899988887653   4444444


Q ss_pred             HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 014212           74 AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP  113 (429)
Q Consensus        74 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p  113 (429)
                      +-...|+.+..++..=.+....++.+++.+.+.+.+..-+
T Consensus       113 l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen  113 LESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            4455677777764444444458889999999999988654

It is also involved in sporulation [].

>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain

Probab=92.05  E-value=0.26  Score=45.77  Aligned_cols=70  Identities=23%  Similarity=0.209  Sum_probs=38.0

Q ss_pred             eEEEccCCCC----HHHHHHHHHHcCCCCCCCCeEEccccc-cCCCCcH------HHHHHHHHhhhhCCCeEEEecCCcc
Q 014212          224 FTVCGDVHGQ----FYDLLNIFELNGLPSEENPYLFNGDFV-DRGSFSV------EVILTLFAFKCMCPSAIYLSRGNHE  292 (429)
Q Consensus       224 ~~v~GDihG~----~~~l~~~l~~~~~~~~~~~~~~lGD~v-drG~~s~------e~~~~l~~lk~~~p~~~~~lrGNhe  292 (429)
                      ..++||.-..    ...+.+.+...-.....+-+|++||+| +-|..+.      +.+.-++... ...--++.+.||||
T Consensus         3 f~~~gD~g~~~~~~~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~~-~~~~P~~~v~GNHD   81 (277)
T cd07378           3 FLALGDWGGGGTAGQKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSAP-SLQVPWYLVLGNHD   81 (277)
T ss_pred             EEEEeecCCCCCHHHHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCCCcchHHHHHHHHHccch-hhcCCeEEecCCcc
Confidence            6788996543    134444433322112345699999997 5554221      2222232211 12346888999999


Q ss_pred             cc
Q 014212          293 SK  294 (429)
Q Consensus       293 ~~  294 (429)
                      ..
T Consensus        82 ~~   83 (277)
T cd07378          82 YS   83 (277)
T ss_pred             cC
Confidence            75

Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.82  E-value=7.2  Score=38.55  Aligned_cols=115  Identities=16%  Similarity=0.102  Sum_probs=81.5

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-------
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ-N--AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-------   81 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------   81 (429)
                      ..+..++.+|......+.|+.|...|..|+++-.. +  +.+-.++|..|.+.++-+.-.+.   .-.+.|.+       
T Consensus       365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~---ld~i~p~nt~s~ssq  441 (629)
T KOG2300|consen  365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKA---LDLIGPLNTNSLSSQ  441 (629)
T ss_pred             hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHH---HHhcCCCCCCcchHH
Confidence            35678889999999999999999999999986433 3  34456789999998765533322   22344542       


Q ss_pred             ---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014212           82 ---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK  130 (429)
Q Consensus        82 ---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~  130 (429)
                         ..+++-.|...+.++++.||...+.+.++.. +..+....-+..+..++
T Consensus       442 ~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma-naed~~rL~a~~LvLLs  492 (629)
T KOG2300|consen  442 RLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA-NAEDLNRLTACSLVLLS  492 (629)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHH
Confidence               2457778888889999999999999999987 44443333333333344

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.81  E-value=1.3  Score=44.98  Aligned_cols=82  Identities=17%  Similarity=0.140  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014212           50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPR------YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK  123 (429)
Q Consensus        50 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~  123 (429)
                      .+.+-|.-.++..+|..|++.|...+..-|.      ++.....++.||..+.+.+.|.++++.|-+.+|.++-.....-
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~  435 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML  435 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            4566677889999999999999999987664      4567788999999999999999999999999999887665555


Q ss_pred             HHHHHHHh
Q 014212          124 ECEKAVKK  131 (429)
Q Consensus       124 ~~~~~~~~  131 (429)
                      ......+.
T Consensus       436 ~~~~~E~~  443 (872)
T KOG4814|consen  436 QSFLAEDK  443 (872)
T ss_pred             HHHHHhcc
Confidence            54444444

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=91.74  E-value=2.2  Score=41.28  Aligned_cols=83  Identities=13%  Similarity=0.067  Sum_probs=64.7

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------------CC------------CCh---HHHHHHH
Q 014212           39 QAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--------------DP------------RYP---KGYYRRG   89 (429)
Q Consensus        39 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------~p------------~~~---~~~~~la   89 (429)
                      ..++.+|.....+..++.++.++|+++.|.+..++|+-.              ++            .|.   .+.++..
T Consensus        31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i  110 (360)
T PF04910_consen   31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI  110 (360)
T ss_pred             HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence            345678999999999999999999999999988888621              11            121   3566677


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Q 014212           90 AAYLAMGKFKEALKDFQQVKKLSPN-DPDAAQK  121 (429)
Q Consensus        90 ~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~  121 (429)
                      ..+.+.|-+.-|.+..+-.+.++|. +|-.-..
T Consensus       111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll  143 (360)
T PF04910_consen  111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLL  143 (360)
T ss_pred             HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHH
Confidence            8888999999999999999999998 6654333

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=91.64  E-value=0.7  Score=28.14  Aligned_cols=29  Identities=17%  Similarity=0.145  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHhhCHHHHHHH--HHHHHHhCC
Q 014212           51 YANRAFAHTKLEEYGSAIQD--ASKAIEIDP   79 (429)
Q Consensus        51 ~~~lg~~~~~~g~~~~A~~~--~~~al~~~p   79 (429)
                      +..+|..+.++|++++|+..  |+-+..+++
T Consensus         4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~   34 (36)
T PF07720_consen    4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK   34 (36)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            44445555555555555555  224444443

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=91.58  E-value=1.5  Score=44.08  Aligned_cols=96  Identities=18%  Similarity=0.118  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHH--HHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH-H
Q 014212           32 QAIDLYSQAIELNSQNAVYYAN--RAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQ-V  108 (429)
Q Consensus        32 ~A~~~~~~al~~~p~~~~~~~~--lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~-a  108 (429)
                      -|+..+...+.++|.++..+..  +...+...++...|......++..+|++..++.+||.+....|....|...+.. +
T Consensus        49 ~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a  128 (620)
T COG3914          49 LAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIA  128 (620)
T ss_pred             HHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3666677777788888877544  477778889998999999999999999999999999988888877666666555 9


Q ss_pred             HHhCCCCHHHHHHHHHHHH
Q 014212          109 KKLSPNDPDAAQKVKECEK  127 (429)
Q Consensus       109 l~~~p~~~~~~~~l~~~~~  127 (429)
                      ....|++......+-.++.
T Consensus       129 ~~~~~~~~~~~~~~~~~~~  147 (620)
T COG3914         129 EWLSPDNAEFLGHLIRFYQ  147 (620)
T ss_pred             HhcCcchHHHHhhHHHHHH
Confidence            9999999998888755544

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=91.57  E-value=0.64  Score=46.00  Aligned_cols=80  Identities=21%  Similarity=0.174  Sum_probs=69.6

Q ss_pred             hhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHh
Q 014212           61 LEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMG---KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEA  137 (429)
Q Consensus        61 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a  137 (429)
                      .+....|+..|.++++..|.....+.+.|.++.+.+   +.-.|+..+..|++++|....+++.++.++..+++  +.+|
T Consensus       387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r--~~ea  464 (758)
T KOG1310|consen  387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTR--YLEA  464 (758)
T ss_pred             hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhh--HHHh
Confidence            445778999999999999999999999999988764   55678889999999999999999999999999998  6777


Q ss_pred             hcCCc
Q 014212          138 IAVPE  142 (429)
Q Consensus       138 ~~~~~  142 (429)
                      +....
T Consensus       465 l~~~~  469 (758)
T KOG1310|consen  465 LSCHW  469 (758)
T ss_pred             hhhHH
Confidence            77655

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.53  E-value=2.7  Score=45.06  Aligned_cols=62  Identities=15%  Similarity=0.162  Sum_probs=53.1

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 014212           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI   77 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   77 (429)
                      .+.+..|..+|.+-.+.|...+|++.|-+|     +++..|...-.+..+.|.|++-+.++.-|.+.
T Consensus      1101 ~n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred             hCChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            355778999999999999999999999887     78888888888899999999998888777653

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.45  E-value=0.36  Score=29.82  Aligned_cols=30  Identities=30%  Similarity=0.307  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC
Q 014212           49 VYYANRAFAHTKLEEYGSAIQDASKAIEID   78 (429)
Q Consensus        49 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   78 (429)
                      .++..+|.+-+...+|++|++.|++++++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            356777888888888888888888887763

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=91.42  E-value=2.1  Score=31.10  Aligned_cols=60  Identities=20%  Similarity=0.115  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH---HHHHHHcCCHHHHHHHHHHHHH
Q 014212           51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR---GAAYLAMGKFKEALKDFQQVKK  110 (429)
Q Consensus        51 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---a~~~~~~g~~~eA~~~~~~al~  110 (429)
                      ....|.-++...+.++|+..++++++..++.+..+..+   ..+|.+.|+|.+++.+-.+=+.
T Consensus         9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~   71 (80)
T PF10579_consen    9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE   71 (80)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456667788999999999999999988877655554   5678889999888776544433

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=91.40  E-value=4.1  Score=37.93  Aligned_cols=97  Identities=20%  Similarity=0.197  Sum_probs=72.6

Q ss_pred             HHHhcCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHhh-CHHHHHHHHHHHHHh----CC---CC------
Q 014212           24 AFRAKKYSQAIDLYSQAIELN----SQN----AVYYANRAFAHTKLE-EYGSAIQDASKAIEI----DP---RY------   81 (429)
Q Consensus        24 ~~~~g~~~~A~~~~~~al~~~----p~~----~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~----~p---~~------   81 (429)
                      ..++|+++.|..++.|+-...    |+.    +..+++.|.-....+ ++++|..++++|.++    ..   ..      
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            467899999999999987654    332    456788888888899 999999999999887    21   11      


Q ss_pred             -hHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHHH
Q 014212           82 -PKGYYRRGAAYLAMGKFK---EALKDFQQVKKLSPNDPDAAQ  120 (429)
Q Consensus        82 -~~~~~~la~~~~~~g~~~---eA~~~~~~al~~~p~~~~~~~  120 (429)
                       ...+..++.+|...+.++   +|....+.+-...|+.+....
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~  125 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFL  125 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHH
Confidence             235677899998888764   466666666666788777663

It is also involved in sporulation [].

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=91.38  E-value=4.2  Score=42.78  Aligned_cols=61  Identities=13%  Similarity=0.013  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHH---------------------hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 014212           17 LKALANEAFRAKKYSQAIDLYSQAIE---------------------LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAI   75 (429)
Q Consensus        17 ~~~~a~~~~~~g~~~~A~~~~~~al~---------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   75 (429)
                      |.=-|..+-..|+.+.|+.+|..|-.                     ....+..+.+.+|..|...|++.+|+..|.+|-
T Consensus       915 ~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  915 YSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            33446677788899999888888743                     234567789999999999999999999988875


Q ss_pred             Hh
Q 014212           76 EI   77 (429)
Q Consensus        76 ~~   77 (429)
                      ..
T Consensus       995 af  996 (1416)
T KOG3617|consen  995 AF  996 (1416)
T ss_pred             HH
Confidence            44

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=91.14  E-value=0.35  Score=26.92  Aligned_cols=23  Identities=26%  Similarity=0.187  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHH
Q 014212           84 GYYRRGAAYLAMGKFKEALKDFQ  106 (429)
Q Consensus        84 ~~~~la~~~~~~g~~~eA~~~~~  106 (429)
                      +++.+|.++..+|+.++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            44555555555555555555443

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=90.87  E-value=0.77  Score=42.52  Aligned_cols=62  Identities=16%  Similarity=0.134  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 014212           33 AIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA   94 (429)
Q Consensus        33 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   94 (429)
                      |..+|.+|+.+.|.+...|+.+|.++...|+.=.|+-+|-+++.....++.+.-+|...+.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999997766678899999888887

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=90.78  E-value=2.9  Score=40.51  Aligned_cols=102  Identities=14%  Similarity=0.072  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHH-HHHHHHHhhCHHHHHHHHHHHHHhCCC-----ChHHHH
Q 014212           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQ-NAVYYAN-RAFAHTKLEEYGSAIQDASKAIEIDPR-----YPKGYY   86 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~   86 (429)
                      -.+++.....+.++|-+..|++..+-.+.++|. |+..-.. +=....+.++|+--++.++........     -|..-+
T Consensus       103 flal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~  182 (360)
T PF04910_consen  103 FLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAF  182 (360)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHH
Confidence            356777888899999999999999999999999 7655443 444446678888777777765542111     234667


Q ss_pred             HHHHHHHHcCCH---------------HHHHHHHHHHHHhCCCC
Q 014212           87 RRGAAYLAMGKF---------------KEALKDFQQVKKLSPND  115 (429)
Q Consensus        87 ~la~~~~~~g~~---------------~eA~~~~~~al~~~p~~  115 (429)
                      ..|.++..+++-               ++|...+++|+...|.-
T Consensus       183 S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v  226 (360)
T PF04910_consen  183 SIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV  226 (360)
T ss_pred             HHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence            888899988888               89999999999987653

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=90.69  E-value=2.4  Score=41.40  Aligned_cols=55  Identities=13%  Similarity=0.079  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHH
Q 014212           17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDAS   72 (429)
Q Consensus        17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   72 (429)
                      ...-|..++.+|+|.++.-+-.=..++.| ++.++..+|.|++..++|++|-.++.
T Consensus       465 ~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~  519 (549)
T PF07079_consen  465 FLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQ  519 (549)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            33445556666666666665555556666 56666666666666666666666553

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=90.54  E-value=1.8  Score=40.08  Aligned_cols=79  Identities=16%  Similarity=0.249  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCcc
Q 014212           64 YGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPES  143 (429)
Q Consensus        64 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~  143 (429)
                      |..-+...+++++-  ....++..++..+...|+++.+.+.+++.+..+|.+..++..+-..+...|+  ...|+..|++
T Consensus       137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~--~~~ai~~y~~  212 (280)
T COG3629         137 FDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGR--QSAAIRAYRQ  212 (280)
T ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC--chHHHHHHHH
Confidence            66666666666654  4677888899999999999999999999999999999999988888888887  5677766664


Q ss_pred             ccc
Q 014212          144 ERH  146 (429)
Q Consensus       144 ~~~  146 (429)
                      -..
T Consensus       213 l~~  215 (280)
T COG3629         213 LKK  215 (280)
T ss_pred             HHH
Confidence            333

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=90.47  E-value=7.7  Score=37.34  Aligned_cols=120  Identities=15%  Similarity=0.005  Sum_probs=72.4

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC---CCCh---HHHHHHHHHHHH
Q 014212           21 ANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID---PRYP---KGYYRRGAAYLA   94 (429)
Q Consensus        21 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~---~~~~~la~~~~~   94 (429)
                      -....+.|+.+.|..+-+++.++.|.-++++...-......|+++.|++..+...+..   ++-.   .+-..-+.+...
T Consensus       161 yleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~  240 (531)
T COG3898         161 YLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL  240 (531)
T ss_pred             HHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence            3344567778888888888888888888887777777778888888887776654432   2211   121212222221


Q ss_pred             -cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           95 -MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        95 -~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                       ..+...|...-.+++++.|+...+-..-+..+..-++  ..++-...+
T Consensus       241 ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~--~rKg~~ilE  287 (531)
T COG3898         241 LDADPASARDDALEANKLAPDLVPAAVVAARALFRDGN--LRKGSKILE  287 (531)
T ss_pred             hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccc--hhhhhhHHH
Confidence             1245667777777777888776665555555554444  444444444

>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]

Probab=89.99  E-value=1.4  Score=43.31  Aligned_cols=184  Identities=17%  Similarity=0.181  Sum_probs=88.2

Q ss_pred             ceEEEccCCC-CHHHHHH----HHHHcCCCC----CCCCeEEccccccC-CCC-----cH------HHHHHHHHhhhhCC
Q 014212          223 HFTVCGDVHG-QFYDLLN----IFELNGLPS----EENPYLFNGDFVDR-GSF-----SV------EVILTLFAFKCMCP  281 (429)
Q Consensus       223 ~~~v~GDihG-~~~~l~~----~l~~~~~~~----~~~~~~~lGD~vdr-G~~-----s~------e~~~~l~~lk~~~p  281 (429)
                      .+..++|+|- ...-+..    .++.++-+.    .-.-++..||.||. |-.     .+      |-...+..+...-|
T Consensus       227 ~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L~~vp  306 (481)
T COG1311         227 YVALISDIHRGSKEFLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFLDQVP  306 (481)
T ss_pred             EEEEEeeeecccHHHHHHHHHHHHHHhcCCcccccceEEEEEecccccccccccCcccccccccchHHHHHHHHHHhhCC
Confidence            4788899996 2222222    333322221    11334556799992 211     11      12222322322223


Q ss_pred             --CeEEEecCCcccccchhhc-cchhhhhcccchHHHHHHHHHhccCcccceec-CeEEEEecCccCCCCCCcccccccc
Q 014212          282 --SAIYLSRGNHESKSMNKIY-GFEGEVRSKLSETFVELFAEVFCCLPLAHVLN-QKVFVVHGGLFSVDGVKLSDIKTID  357 (429)
Q Consensus       282 --~~~~~lrGNhe~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~-~~~~~vH~gi~~~~~~~~~~i~~~~  357 (429)
                        =.|++.+||||.--..... .+.....     .++...+-.|-.=|.-.-++ .+++..||       ++++||.+.-
T Consensus       307 ~~I~v~i~PGnhDa~r~a~PQp~~~~~~k-----slf~~~n~~~v~NP~~~~l~G~~vL~~hG-------~sidDii~~v  374 (481)
T COG1311         307 EHIKVFIMPGNHDAVRQALPQPHFPELIK-----SLFSLNNLLFVSNPALVSLHGVDVLIYHG-------RSIDDIIKLV  374 (481)
T ss_pred             CCceEEEecCCCCccccccCCCCcchhhc-----ccccccceEecCCCcEEEECCEEEEEecC-------CCHHHHHhhC
Confidence              4578889999976554333 2222222     22322222222224333444 47888886       4666666542


Q ss_pred             CC--CCCCCC------------CcccccccCCCCCCCCCCCCCCCCcEEEEEeeccccccCceeecCCeEEEEcCCCCC
Q 014212          358 RF--CEPPEE------------GLMCELLWSDPQPLPGRGPSKRGVGLSFVVRSHEVKDEGYEIEHDGKLITVFSAPNY  422 (429)
Q Consensus       358 r~--~~~~~~------------~~~~~~lw~dp~~~~~~~~~~~~~~~~~iir~h~~~~~g~~~~~~~~~~t~fs~~~y  422 (429)
                      ..  .+.+..            +..-+-+|.-|.... ...-..-..  .++.||+. ..|+....++++|..+|=+..
T Consensus       375 P~~~~~~~~~ame~lLk~rHlaPtygg~~p~aP~~kD-~lVIeevPD--v~~~Ghvh-~~g~~~y~gv~~vns~T~q~q  449 (481)
T COG1311         375 PGADYDSPLKAMEELLKRRHLAPTYGGTLPIAPETKD-YLVIEEVPD--VFHTGHVH-KFGTGVYEGVNLVNSGTWQEQ  449 (481)
T ss_pred             CCCCccchHHHHHHHHHhcccCCCCCCccccccCCcC-ceeeccCCc--EEEEcccc-ccceeEEeccceEEeeeecch
Confidence            21  111111            222334555554311 111111111  26789997 488888888777777765543

>PLN02533 probable purple acid phosphatase

Probab=89.74  E-value=0.52  Score=46.77  Aligned_cols=69  Identities=16%  Similarity=0.180  Sum_probs=36.0

Q ss_pred             CceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcH---HHHHHHHHhhhhCCCeEEEecCCcccc
Q 014212          222 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSV---EVILTLFAFKCMCPSAIYLSRGNHESK  294 (429)
Q Consensus       222 ~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~---e~~~~l~~lk~~~p~~~~~lrGNhe~~  294 (429)
                      .++.++||++-. ......++..... ..+-+++.||++.-+....   +-..++-.+...  --++.+.||||..
T Consensus       140 ~~f~v~GDlG~~-~~~~~tl~~i~~~-~pD~vl~~GDl~y~~~~~~~wd~f~~~i~~l~s~--~P~m~~~GNHE~~  211 (427)
T PLN02533        140 IKFAVSGDLGTS-EWTKSTLEHVSKW-DYDVFILPGDLSYANFYQPLWDTFGRLVQPLASQ--RPWMVTHGNHELE  211 (427)
T ss_pred             eEEEEEEeCCCC-cccHHHHHHHHhc-CCCEEEEcCccccccchHHHHHHHHHHhhhHhhc--CceEEeCcccccc
Confidence            358899998532 1111222222222 2345889999997543321   112222222112  3467789999975

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=89.74  E-value=18  Score=35.19  Aligned_cols=175  Identities=11%  Similarity=0.064  Sum_probs=109.0

Q ss_pred             HhcCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh------------hCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 014212           26 RAKKY-SQAIDLYSQAIELNSQNAVYYANRAFAHTKL------------EEYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (429)
Q Consensus        26 ~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   92 (429)
                      ..|.+ .++++.=.+.+..+|+...+|...-.++...            .-+++-+.....+++.+|+...+|+.+..++
T Consensus        40 ~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L  119 (421)
T KOG0529|consen   40 EAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVL  119 (421)
T ss_pred             hccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            44555 4677778888889999988887654444322            2345667788889999999999999999999


Q ss_pred             HHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCCcccC
Q 014212           93 LAMGK--FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEG  170 (429)
Q Consensus        93 ~~~g~--~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~  170 (429)
                      .+.+.  +..-++.++++++.+|.+-.+|.....+.......     ..     ...+....-.+.+.-++.+..+.+.-
T Consensus       120 ~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~-----~~-----~~~~El~ftt~~I~~nfSNYsaWhyR  189 (421)
T KOG0529|consen  120 QKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS-----RN-----LEKEELEFTTKLINDNFSNYSAWHYR  189 (421)
T ss_pred             HhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc-----cc-----cchhHHHHHHHHHhccchhhhHHHHH
Confidence            98874  57888999999999999988887776665444331     00     11111222223333333333332211


Q ss_pred             CCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCCee
Q 014212          171 DVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLV  214 (429)
Q Consensus       171 ~~l~~~~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~~  214 (429)
                      .    -.+..+...-..+..+++..+..=++....++-.+|.-.
T Consensus       190 s----~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~Dq  229 (421)
T KOG0529|consen  190 S----LLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQ  229 (421)
T ss_pred             H----HHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCcccc
Confidence            1    111111111122334566667777777777777776654

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=89.57  E-value=1.7  Score=35.85  Aligned_cols=46  Identities=22%  Similarity=0.163  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 014212           17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE   62 (429)
Q Consensus        17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g   62 (429)
                      ....|...+..|++..|.+..+.++..+|++..+...++.++.++|
T Consensus        73 vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg  118 (141)
T PF14863_consen   73 VLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG  118 (141)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            3344444445555555555555555555555555444444444443

>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]

Probab=89.48  E-value=0.014  Score=55.07  Aligned_cols=100  Identities=4%  Similarity=-0.220  Sum_probs=72.1

Q ss_pred             CCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhccc----chHHHHHHHHHhc
Q 014212          248 SEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKL----SETFVELFAEVFC  323 (429)
Q Consensus       248 ~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  323 (429)
                      +.....|+++++++++.++++.+.+-+..+..+...-..+++||+..     ++++.++.-.-    ...+++..++.+.
T Consensus        46 ~d~latVdvdp~s~t~c~vI~r~~~~~~gdelhhsgwn~~ssc~~~~-----~~~R~~LVlp~l~S~riyvid~~~ep~~  120 (476)
T KOG0918|consen   46 PDYLATVDVDPSSPTYCQVIHRLPMPYLGDELHHSGWNSCSSCHGDS-----SFKRRYLVLPSLNSGRIYVIDVKTEPRK  120 (476)
T ss_pred             CcceeEEecCCCCCcceeeEEEeccCcccchhcccchhhhhhhccCc-----chhhhheeecccccCceEEEEeccCcCc
Confidence            44456899999999999999999999999888777777789999433     33332221111    2346667788888


Q ss_pred             cCcccceecCeEEEEecCccCCCCCCccccc
Q 014212          324 CLPLAHVLNQKVFVVHGGLFSVDGVKLSDIK  354 (429)
Q Consensus       324 ~lp~~~~~~~~~~~vH~gi~~~~~~~~~~i~  354 (429)
                      .++...+.+ ++++.||++ +|.......+.
T Consensus       121 ~~l~k~i~~-~il~~~~l~-~Pht~hcla~g  149 (476)
T KOG0918|consen  121 PSLEKTIDP-DILEKTGLA-CPHTSHCLASG  149 (476)
T ss_pred             cceeeeech-hhHhhcCCc-CCcccccccCC
Confidence            888887756 999999998 77654443333

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=89.41  E-value=0.49  Score=26.32  Aligned_cols=21  Identities=14%  Similarity=-0.219  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHhhCHHHHHHHH
Q 014212           51 YANRAFAHTKLEEYGSAIQDA   71 (429)
Q Consensus        51 ~~~lg~~~~~~g~~~~A~~~~   71 (429)
                      ...+|.++..+|++++|...+
T Consensus         4 ~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    4 RLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHcCCHHHHHHHH
Confidence            344455555555555554443

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=89.34  E-value=1.7  Score=37.92  Aligned_cols=79  Identities=15%  Similarity=0.080  Sum_probs=59.7

Q ss_pred             HHHhcCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcCCH
Q 014212           24 AFRAKKYSQAIDLYSQAIEL-NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR----YPKGYYRRGAAYLAMGKF   98 (429)
Q Consensus        24 ~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~   98 (429)
                      ++.+-.-++|...|-++-.. .=+++...+.+|..|. ..|.++|+..+.+++++.+.    +++.+..||.++..+|++
T Consensus       116 ~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~  194 (203)
T PF11207_consen  116 HWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY  194 (203)
T ss_pred             HhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence            33443446777777665432 1246888888887665 67889999999999998654    588999999999999999


Q ss_pred             HHHHH
Q 014212           99 KEALK  103 (429)
Q Consensus        99 ~eA~~  103 (429)
                      ++|.-
T Consensus       195 e~AYi  199 (203)
T PF11207_consen  195 EQAYI  199 (203)
T ss_pred             hhhhh
Confidence            99863

>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain

Probab=89.22  E-value=0.54  Score=44.08  Aligned_cols=66  Identities=23%  Similarity=0.311  Sum_probs=40.0

Q ss_pred             eEEEccCCCCHH--------------HHHHHHHHcCCCCCCCCeEEccccccCCCC-c-----HHHHHHHHHhhhhCCCe
Q 014212          224 FTVCGDVHGQFY--------------DLLNIFELNGLPSEENPYLFNGDFVDRGSF-S-----VEVILTLFAFKCMCPSA  283 (429)
Q Consensus       224 ~~v~GDihG~~~--------------~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~-s-----~e~~~~l~~lk~~~p~~  283 (429)
                      +....|+||++.              .+..++++.....+..-++..||+++..+. |     ..++..+-++..   + 
T Consensus         3 il~tnD~Hg~~~~~~~~~~~~~gG~arl~~~i~~~r~~~~~~l~ld~GD~~~gs~~~s~~~~g~~~~~~~n~~g~---D-   78 (288)
T cd07412           3 ILAINDFHGRLEPPGKVVTVPAGGAAYLAAYLDEARAQNPNSLFVSAGDLIGASPFESALLQDEPTIEALNAMGV---D-   78 (288)
T ss_pred             EEEEeccccCccCCCCccccccccHHHHHHHHHHHHhcCCCeEEEeCCcccccccchhhcccCCcHHHHHHhhCC---e-
Confidence            677789998754              355666665433333346668999986664 2     245555555532   3 


Q ss_pred             EEEecCCcccc
Q 014212          284 IYLSRGNHESK  294 (429)
Q Consensus       284 ~~~lrGNhe~~  294 (429)
                       ++..||||.-
T Consensus        79 -a~t~GNHefd   88 (288)
T cd07412          79 -ASAVGNHEFD   88 (288)
T ss_pred             -eeeecccccc
Confidence             2445999953

YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=89.15  E-value=4.4  Score=40.51  Aligned_cols=71  Identities=10%  Similarity=0.049  Sum_probs=65.4

Q ss_pred             CCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 014212            6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI   77 (429)
Q Consensus         6 ~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   77 (429)
                      ..+.+|.+..+|+.+-..+..+ -++++.+.|++.+...|..+.+|.......+..++|+.....|.+++..
T Consensus        12 rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk   82 (656)
T KOG1914|consen   12 RIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK   82 (656)
T ss_pred             HHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            3467899999999999988877 9999999999999999999999999999999999999999999999864

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=88.99  E-value=7.8  Score=36.10  Aligned_cols=108  Identities=22%  Similarity=0.173  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCCCC-hHHH
Q 014212           15 EELKALANEAFR----AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRY-PKGY   85 (429)
Q Consensus        15 ~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~-~~~~   85 (429)
                      .+...+|..+..    ..+..+|+.+|+.+  .....+.+.+++|.+|..    ..+..+|..+|++|....-.. ..+.
T Consensus        74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~  151 (292)
T COG0790          74 AALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAM  151 (292)
T ss_pred             HHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHH
Confidence            345555555543    34677788888844  345567777888888776    347888888888887763222 2337


Q ss_pred             HHHHHHHHHcC-------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014212           86 YRRGAAYLAMG-------KFKEALKDFQQVKKLSPNDPDAAQKVKECE  126 (429)
Q Consensus        86 ~~la~~~~~~g-------~~~eA~~~~~~al~~~p~~~~~~~~l~~~~  126 (429)
                      +.+|.+|..-.       ....|...|.++-...  ++.+...++.++
T Consensus       152 ~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y  197 (292)
T COG0790         152 YRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMY  197 (292)
T ss_pred             HHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHH
Confidence            77777776642       2236788888777765  666666776554

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=88.97  E-value=3  Score=45.91  Aligned_cols=105  Identities=15%  Similarity=0.193  Sum_probs=88.5

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-   78 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-   78 (429)
                      ..+|+.+..+..++..+...+++++|+..-.++.-+        .|+....+.+++...+..+....|+..+.++..+. 
T Consensus       967 ~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~ 1046 (1236)
T KOG1839|consen  967 VLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKL 1046 (1236)
T ss_pred             hcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhc
Confidence            347888999999999999999999999988777543        35567788899988899999999999999998763 


Q ss_pred             -------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 014212           79 -------PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS  112 (429)
Q Consensus        79 -------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~  112 (429)
                             |.-+....+++.++...++++.|+.+.+.|++..
T Consensus      1047 Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1047 LSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred             cccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence                   4445566788999999999999999999999865

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.82  E-value=14  Score=31.62  Aligned_cols=42  Identities=19%  Similarity=0.226  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014212           83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC  125 (429)
Q Consensus        83 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~  125 (429)
                      .+.-.||.+-.+.|++.+|...|.+... +...|..-.+.+.+
T Consensus       168 sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~  209 (221)
T COG4649         168 SAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQI  209 (221)
T ss_pred             HHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHH
Confidence            3455567777777777777777776655 44444444444433

>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain

Probab=88.60  E-value=0.85  Score=41.95  Aligned_cols=64  Identities=22%  Similarity=0.231  Sum_probs=37.9

Q ss_pred             eEEEccCCCCH----------HHHHHHHHHcCCCCCCCCeEEccccccCCCCc-----HHHHHHHHHhhhhCCCeEEEec
Q 014212          224 FTVCGDVHGQF----------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFS-----VEVILTLFAFKCMCPSAIYLSR  288 (429)
Q Consensus       224 ~~v~GDihG~~----------~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s-----~e~~~~l~~lk~~~p~~~~~lr  288 (429)
                      +..+.|+||++          ..+..++++.... +..-++..||.++..+.+     ..++..+-.+   -.+.  +..
T Consensus         3 il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~-~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~~---g~d~--~~~   76 (257)
T cd07408           3 ILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKL-DNDLLVDAGDAIQGLPISDLDKGETIIKIMNAV---GYDA--VTP   76 (257)
T ss_pred             EEEeccCcccccCCCCccccHHHHHHHHHHHHhc-CCEEEEeCCCcCCCchhhhhcCCcHHHHHHHhc---CCcE--Ecc
Confidence            67788999874          4455566655433 234466679999876643     2333333333   2232  346


Q ss_pred             CCccc
Q 014212          289 GNHES  293 (429)
Q Consensus       289 GNhe~  293 (429)
                      ||||.
T Consensus        77 GNHef   81 (257)
T cd07408          77 GNHEF   81 (257)
T ss_pred             ccccc
Confidence            99995

SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=88.34  E-value=9  Score=36.91  Aligned_cols=96  Identities=18%  Similarity=0.145  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 014212           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAV-YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   92 (429)
                      +-.+...++...-.|+++.|.+-|+..+. +|..-. -+..|-..-..+|+.+.|..+.+++-...|.-+.++...-...
T Consensus       120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r  198 (531)
T COG3898         120 PLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEAR  198 (531)
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence            34455566667777777777777766542 332111 1111112223567777777777777777777776666666666


Q ss_pred             HHcCCHHHHHHHHHHHHH
Q 014212           93 LAMGKFKEALKDFQQVKK  110 (429)
Q Consensus        93 ~~~g~~~eA~~~~~~al~  110 (429)
                      ...|+++.|++..+...+
T Consensus       199 ~~~gdWd~AlkLvd~~~~  216 (531)
T COG3898         199 CAAGDWDGALKLVDAQRA  216 (531)
T ss_pred             HhcCChHHHHHHHHHHHH
Confidence            777777777777665554

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=88.32  E-value=5.3  Score=34.89  Aligned_cols=75  Identities=12%  Similarity=0.152  Sum_probs=55.3

Q ss_pred             hhCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHhHHHH
Q 014212           61 LEEYGSAIQDASKAIEID-PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN----DPDAAQKVKECEKAVKKLKFE  135 (429)
Q Consensus        61 ~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~~~  135 (429)
                      .|+ ++|...|.++-.-. -++++..+.||..|. .-+.++|+..+.+++++.+.    ++++...|+.++...++  ++
T Consensus       120 ~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~--~e  195 (203)
T PF11207_consen  120 FGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN--YE  195 (203)
T ss_pred             cCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc--hh
Confidence            344 56766665443221 147888888888776 66788999999999998754    48899999999999888  66


Q ss_pred             Hhhc
Q 014212          136 EAIA  139 (429)
Q Consensus       136 ~a~~  139 (429)
                      +|..
T Consensus       196 ~AYi  199 (203)
T PF11207_consen  196 QAYI  199 (203)
T ss_pred             hhhh
Confidence            6643

>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain

Probab=88.23  E-value=0.96  Score=41.78  Aligned_cols=55  Identities=16%  Similarity=0.138  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHcCCCCCCCCe-EEccccccCCCCcH-----HHHHHHHHhhhhCCCeEEEecCCcccc
Q 014212          234 FYDLLNIFELNGLPSEENPY-LFNGDFVDRGSFSV-----EVILTLFAFKCMCPSAIYLSRGNHESK  294 (429)
Q Consensus       234 ~~~l~~~l~~~~~~~~~~~~-~~lGD~vdrG~~s~-----e~~~~l~~lk~~~p~~~~~lrGNhe~~  294 (429)
                      +..+..++++.......+.+ +..||+++..+.+.     .++..+-.+    +- -++. ||||..
T Consensus        35 ~~r~~~~v~~~~~~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~l~~~----g~-da~~-GNHefd   95 (264)
T cd07411          35 FAHIATLIKRIRAERNPNTLLLDGGDTWQGSGEALYTRGQAMVDALNAL----GV-DAMV-GHWEFT   95 (264)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEeCCCccCCChHHhhcCChhHHHHHHhh----CC-eEEe-cccccc
Confidence            44455566654322122334 45899998776542     344444443    22 2444 999953

SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=87.84  E-value=3.3  Score=40.04  Aligned_cols=82  Identities=20%  Similarity=0.160  Sum_probs=62.1

Q ss_pred             HHHHHHhhCHHHHHHHHHHHHHhC--------CCCh----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 014212           55 AFAHTKLEEYGSAIQDASKAIEID--------PRYP----------KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP  116 (429)
Q Consensus        55 g~~~~~~g~~~~A~~~~~~al~~~--------p~~~----------~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~  116 (429)
                      |..++++++|..|..-|..|+++-        |..+          ..--.|..||..+++.+-|+..-.+.+-++|.++
T Consensus       183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f  262 (569)
T PF15015_consen  183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF  262 (569)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence            445666777777777777766652        2211          1234588999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHHHHHhh
Q 014212          117 DAAQKVKECEKAVKKLKFEEAI  138 (429)
Q Consensus       117 ~~~~~l~~~~~~~~~~~~~~a~  138 (429)
                      .-+...+.+.+.+.+  |.+|-
T Consensus       263 rnHLrqAavfR~LeR--y~eAa  282 (569)
T PF15015_consen  263 RNHLRQAAVFRRLER--YSEAA  282 (569)
T ss_pred             hHHHHHHHHHHHHHH--HHHHH
Confidence            999999999999888  44443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=87.82  E-value=3.7  Score=42.25  Aligned_cols=88  Identities=11%  Similarity=0.144  Sum_probs=66.8

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   88 (429)
                      .+.....++.++|..+.....|++|.++|.+.=        ..-+...|++.+.+|++-..    ....-|++.+.+-.+
T Consensus       791 dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~--------~~e~~~ecly~le~f~~LE~----la~~Lpe~s~llp~~  858 (1189)
T KOG2041|consen  791 DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG--------DTENQIECLYRLELFGELEV----LARTLPEDSELLPVM  858 (1189)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------chHhHHHHHHHHHhhhhHHH----HHHhcCcccchHHHH
Confidence            344556788888888888888888888888742        23456778888877775443    344458899999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHH
Q 014212           89 GAAYLAMGKFKEALKDFQQV  108 (429)
Q Consensus        89 a~~~~~~g~~~eA~~~~~~a  108 (429)
                      |..+...|.-++|+++|-+.
T Consensus       859 a~mf~svGMC~qAV~a~Lr~  878 (1189)
T KOG2041|consen  859 ADMFTSVGMCDQAVEAYLRR  878 (1189)
T ss_pred             HHHHHhhchHHHHHHHHHhc
Confidence            99999999999999887553

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=86.97  E-value=16  Score=34.41  Aligned_cols=95  Identities=20%  Similarity=0.165  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC------------------
Q 014212           17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID------------------   78 (429)
Q Consensus        17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------------   78 (429)
                      -+..-+...+..+.++-++....|++++|.-+.+|..++.--  .--..+|.+.+++|++.-                  
T Consensus       187 e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~d  264 (556)
T KOG3807|consen  187 EDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHE  264 (556)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchh
Confidence            345556777888889999999999999999999998887542  233456666666666431                  


Q ss_pred             -----CCChH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 014212           79 -----PRYPK--GYYRRGAAYLAMGKFKEALKDFQQVKKLSP  113 (429)
Q Consensus        79 -----p~~~~--~~~~la~~~~~~g~~~eA~~~~~~al~~~p  113 (429)
                           ..+..  ...++|.|-.++|+..||++.++...+-.|
T Consensus       265 a~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p  306 (556)
T KOG3807|consen  265 AQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP  306 (556)
T ss_pred             hhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence                 01222  345689999999999999999998888777

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=86.44  E-value=2.8  Score=38.64  Aligned_cols=57  Identities=21%  Similarity=0.192  Sum_probs=40.7

Q ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014212           52 ANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQV  108 (429)
Q Consensus        52 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a  108 (429)
                      ...+..|...|.+.+|++..++++.++|-+...+..+-.++..+|+--+|...|++.
T Consensus       283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            334566677777777777777777777777777777777777777766666666554

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=86.29  E-value=25  Score=37.52  Aligned_cols=101  Identities=19%  Similarity=0.067  Sum_probs=81.8

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ--N-------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-   81 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-   81 (429)
                      +++......|.....++++.+|.....++...-+.  .       +...-..|.+....|++++|++..+.++..-|.+ 
T Consensus       413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~  492 (894)
T COG2909         413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA  492 (894)
T ss_pred             hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence            34556667788889999999999998888764333  1       3344556888889999999999999999988764 


Q ss_pred             ----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 014212           82 ----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLS  112 (429)
Q Consensus        82 ----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~  112 (429)
                          ..++..+|.+..-.|++++|..+.+++.++.
T Consensus       493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a  527 (894)
T COG2909         493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMA  527 (894)
T ss_pred             chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence                3467889999999999999999999999884

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=86.25  E-value=19  Score=35.22  Aligned_cols=69  Identities=12%  Similarity=0.054  Sum_probs=51.0

Q ss_pred             ccHhHH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH--HHHHHHHHH--HHHhhCHHHHHHHHHHHHHh
Q 014212            9 SSVSRA--EELKALANEAFRAKKYSQAIDLYSQAIELNSQNA--VYYANRAFA--HTKLEEYGSAIQDASKAIEI   77 (429)
Q Consensus         9 ~~p~~~--~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~--~~~~g~~~~A~~~~~~al~~   77 (429)
                      .+|...  ......+..+++.++|..|.+.+..+.+.-|...  ..+..++.+  ++..-++++|.+.+++.+..
T Consensus       124 ~~p~~~~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  124 ENPYEVFGDREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            445544  3667888999999999999999999998534433  344555444  46778999999999987754

>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []

Probab=85.87  E-value=0.56  Score=47.58  Aligned_cols=39  Identities=23%  Similarity=0.436  Sum_probs=32.1

Q ss_pred             CCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCccc
Q 014212          250 ENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHES  293 (429)
Q Consensus       250 ~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~  293 (429)
                      -+++-.+||+-||||.+-.+++.|+..     ..|=+-=||||.
T Consensus       185 VDhLHIvGDIyDRGp~pd~ImD~Lm~~-----hsvDIQWGNHDI  223 (640)
T PF06874_consen  185 VDHLHIVGDIYDRGPRPDKIMDRLMNY-----HSVDIQWGNHDI  223 (640)
T ss_pred             hhheeecccccCCCCChhHHHHHHhcC-----CCccccccchHH
Confidence            346999999999999999999999865     344555699993

This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=85.80  E-value=14  Score=35.83  Aligned_cols=103  Identities=15%  Similarity=0.074  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCC-CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC----CCChH
Q 014212           14 AEELKALANEAFRAKKYSQAIDLYSQAIEL-----NSQ-NAVYYANRAFAHTKLEEYGSAIQDASKAIEID----PRYPK   83 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~   83 (429)
                      +..|+.+...|-..++...-...+...++.     +.. .+...+.+-.+|...+.|++|-..-.++.--+    .+.+.
T Consensus       169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~AR  248 (493)
T KOG2581|consen  169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWAR  248 (493)
T ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHH
Confidence            445666666666677755444444443332     222 24445566788888899999988777665211    13456


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 014212           84 GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP  116 (429)
Q Consensus        84 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~  116 (429)
                      ..|.+|.+..-+++|..|.+++-+|+...|.+.
T Consensus       249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq~~  281 (493)
T KOG2581|consen  249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA  281 (493)
T ss_pred             HHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence            778899999999999999999999999999843

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=85.79  E-value=11  Score=44.43  Aligned_cols=116  Identities=17%  Similarity=0.086  Sum_probs=90.3

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-CC-------
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-PR-------   80 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~-------   80 (429)
                      -+...++.|.+.|++....|+++.|-.+.-+|.+..  -+.++..+|..+++.|+-..|+..+++.++.+ |+       
T Consensus      1665 ~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~ 1742 (2382)
T KOG0890|consen 1665 LKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTD 1742 (2382)
T ss_pred             ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccc
Confidence            355667899999999999999999999999988766  57788899999999999999999999999764 22       


Q ss_pred             ---------ChHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014212           81 ---------YPKGYYRRGAAYLAMGKF--KEALKDFQQVKKLSPNDPDAAQKVKECE  126 (429)
Q Consensus        81 ---------~~~~~~~la~~~~~~g~~--~eA~~~~~~al~~~p~~~~~~~~l~~~~  126 (429)
                               ...+.+.++.-..+.+++  ++-+..|+.+.+..|....-++.+|..+
T Consensus      1743 ~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1743 TPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred             cchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHH
Confidence                     112344444444455554  4567889999999998777777777443

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=85.69  E-value=25  Score=31.22  Aligned_cols=63  Identities=13%  Similarity=0.085  Sum_probs=56.4

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh
Q 014212           20 LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP   82 (429)
Q Consensus        20 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~   82 (429)
                      -...+.+.+..++|+...+.-++.+|.+......+-..+.-.|+|++|...++-+-++.|++.
T Consensus         7 t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t   69 (273)
T COG4455           7 TISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT   69 (273)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence            345678889999999999999999999999988888999999999999999999999999764

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=85.68  E-value=2.1  Score=42.01  Aligned_cols=105  Identities=12%  Similarity=0.050  Sum_probs=81.3

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 014212           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA   90 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~   90 (429)
                      |..+......+.+.-..|+|+.|......+-..-.....+...+-.-.+.+|++++|....+-.+.-.-++++..--.|.
T Consensus       320 ~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~  399 (831)
T PRK15180        320 QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAG  399 (831)
T ss_pred             CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecc
Confidence            33444455667778888999999888877766554555555556677889999999999988888776677777766677


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCC
Q 014212           91 AYLAMGKFKEALKDFQQVKKLSPND  115 (429)
Q Consensus        91 ~~~~~g~~~eA~~~~~~al~~~p~~  115 (429)
                      .-..+|-+++|.-.+++.+.++|..
T Consensus       400 sa~~l~~~d~~~~~wk~~~~~~~~~  424 (831)
T PRK15180        400 SADALQLFDKSYHYWKRVLLLNPET  424 (831)
T ss_pred             cHHHHhHHHHHHHHHHHHhccCChh
Confidence            7778899999999999999998753

>COG1768 Predicted phosphohydrolase [General function prediction only]

Probab=85.30  E-value=1.8  Score=36.74  Aligned_cols=68  Identities=24%  Similarity=0.268  Sum_probs=43.4

Q ss_pred             CceEEEccCCCCHHH-HHHHHHHcCCCCCCCCeEEccccc--cCCCCcHHHHHHHHHhhhhCCCeEEEecCCccccc
Q 014212          222 KHFTVCGDVHGQFYD-LLNIFELNGLPSEENPYLFNGDFV--DRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKS  295 (429)
Q Consensus       222 ~~~~v~GDihG~~~~-l~~~l~~~~~~~~~~~~~~lGD~v--drG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~  295 (429)
                      +.+.|+|+-.-.+.. ..+-..  +...+.+.++.-||+-  =|=++..+=+.+|-.|    |+.-+++|||||.+-
T Consensus        17 KpM~vFGe~W~gh~ekI~k~W~--~~v~~eDiVllpGDiSWaM~l~ea~~Dl~~i~~L----PG~K~m~rGNHDYWw   87 (230)
T COG1768          17 KPMEVFGEPWSGHHEKIKKHWR--SKVSPEDIVLLPGDISWAMRLEEAEEDLRFIGDL----PGTKYMIRGNHDYWW   87 (230)
T ss_pred             CceeecCCcccCchHHHHHHHH--hcCChhhEEEecccchhheechhhhhhhhhhhcC----CCcEEEEecCCcccc
Confidence            347777776544443 333222  2233445577779985  4556677777777665    899999999999664

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=84.98  E-value=3.5  Score=38.00  Aligned_cols=59  Identities=22%  Similarity=0.154  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 014212           16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKA   74 (429)
Q Consensus        16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   74 (429)
                      .+...+..|...|.+.+|+++-++++.++|-+...+..+-..+..+||--.|...|++-
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            34456788899999999999999999999999999999999999999988888777664

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=84.50  E-value=2.8  Score=23.93  Aligned_cols=29  Identities=17%  Similarity=0.211  Sum_probs=18.2

Q ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014212           28 KKYSQAIDLYSQAIELNSQNAVYYANRAF   56 (429)
Q Consensus        28 g~~~~A~~~~~~al~~~p~~~~~~~~lg~   56 (429)
                      |+++.|...|+++++..|.+...|...+.
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~   29 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAE   29 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            34566666666666666666666665543

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=84.12  E-value=7.2  Score=43.17  Aligned_cols=109  Identities=18%  Similarity=0.199  Sum_probs=88.9

Q ss_pred             CCCCCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 014212            3 NMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKA   74 (429)
Q Consensus         3 ~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   74 (429)
                      +.......|++...+.+++...+..++...|+..+.++..+        .|..+....+++.++...++++.|+.+.+.|
T Consensus      1004 eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A 1083 (1236)
T KOG1839|consen 1004 ERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESA 1083 (1236)
T ss_pred             chhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHH
Confidence            44456678999999999999999999999999999999875        4666777789999999999999999999999


Q ss_pred             HHhCC--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014212           75 IEIDP--------RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL  111 (429)
Q Consensus        75 l~~~p--------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~  111 (429)
                      +...-        .....+..+|..+..++++..|+...+..+.+
T Consensus      1084 ~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1084 LAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred             HHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence            98642        24556777888888888887777777666654

>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain

Probab=83.38  E-value=3.3  Score=38.88  Aligned_cols=72  Identities=22%  Similarity=0.254  Sum_probs=39.8

Q ss_pred             EEccCCCC--HHHHHHHHHHcCCC-CCCCCeEEccccccCCCCcH--H------HHHHHHHhhhhCC-CeEEEecCCccc
Q 014212          226 VCGDVHGQ--FYDLLNIFELNGLP-SEENPYLFNGDFVDRGSFSV--E------VILTLFAFKCMCP-SAIYLSRGNHES  293 (429)
Q Consensus       226 v~GDihG~--~~~l~~~l~~~~~~-~~~~~~~~lGD~vdrG~~s~--e------~~~~l~~lk~~~p-~~~~~lrGNhe~  293 (429)
                      -.|+....  ...+..+++..... +..+-+|+.||+|+.+....  +      .-.+...++..+| -.|+.+.||||.
T Consensus        42 ~~G~~~CD~p~~l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~  121 (296)
T cd00842          42 PWGDYGCDSPWRLVESALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDS  121 (296)
T ss_pred             CCcCcCCCCcHHHHHHHHHHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCC
Confidence            34554422  24444555543221 34456899999998886531  1      1122222333333 468999999998


Q ss_pred             ccch
Q 014212          294 KSMN  297 (429)
Q Consensus       294 ~~~~  297 (429)
                      ...+
T Consensus       122 ~p~~  125 (296)
T cd00842         122 YPVN  125 (296)
T ss_pred             Cccc
Confidence            6543

Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=83.16  E-value=64  Score=33.80  Aligned_cols=110  Identities=20%  Similarity=0.102  Sum_probs=77.4

Q ss_pred             cHhHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC--
Q 014212           10 SVSRAEELKALANEAF-RAKKYSQAIDLYSQAIELNSQ--NA----VYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--   80 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~--~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--   80 (429)
                      ...++.+.+.+|.+++ ...+++.|..++++++.+...  ..    .+.+.++.++.+.+... |...++++++.--.  
T Consensus        55 p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~  133 (608)
T PF10345_consen   55 PRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYG  133 (608)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccC
Confidence            3456778899999998 678999999999999887643  22    23445678888887766 99999999887544  


Q ss_pred             --ChHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHH
Q 014212           81 --YPKGYYRRG--AAYLAMGKFKEALKDFQQVKKLS--PNDPDAAQ  120 (429)
Q Consensus        81 --~~~~~~~la--~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~  120 (429)
                        .+...+++-  ..+...+++..|++.++......  ..++.+..
T Consensus       134 ~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v  179 (608)
T PF10345_consen  134 HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFV  179 (608)
T ss_pred             chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHH
Confidence              222233332  22223379999999999998876  45555433

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=83.15  E-value=10  Score=35.73  Aligned_cols=95  Identities=17%  Similarity=0.137  Sum_probs=66.7

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 014212           29 KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--DPRYPKGYYRRGAAYLAMGKFKEALKDFQ  106 (429)
Q Consensus        29 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~  106 (429)
                      +|..-..+|.-.....|+ +.+-.|++.+..+..-.+.++...+.....  -..+-..+--.|..+.++|+.++|...|+
T Consensus       311 DW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ayd  389 (415)
T COG4941         311 DWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYD  389 (415)
T ss_pred             ChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHH
Confidence            556666666666666665 334466676666666667777766655543  12344456677999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHH
Q 014212          107 QVKKLSPNDPDAAQKVKE  124 (429)
Q Consensus       107 ~al~~~p~~~~~~~~l~~  124 (429)
                      +++.+.++..+..+....
T Consensus       390 rAi~La~~~aer~~l~~r  407 (415)
T COG4941         390 RAIALARNAAERAFLRQR  407 (415)
T ss_pred             HHHHhcCChHHHHHHHHH
Confidence            999999998877665544

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.14  E-value=9.7  Score=27.53  Aligned_cols=31  Identities=29%  Similarity=0.242  Sum_probs=23.4

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIE   42 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~   42 (429)
                      ..+..+...|..+-+.|++++|+.+|+++++
T Consensus         4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe   34 (75)
T cd02682           4 EMARKYAINAVKAEKEGNAEDAITNYKKAIE   34 (75)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            3456677778888888888888888777765

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain

Probab=82.82  E-value=2.5  Score=38.86  Aligned_cols=58  Identities=21%  Similarity=0.197  Sum_probs=36.7

Q ss_pred             CCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCc-----HHHHHHHHHhhhhCCCeEEEecCCccc
Q 014212          231 HGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFS-----VEVILTLFAFKCMCPSAIYLSRGNHES  293 (429)
Q Consensus       231 hG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s-----~e~~~~l~~lk~~~p~~~~~lrGNhe~  293 (429)
                      .|.+..+..++++.....+..-++..||+++.++.+     ..++..+-.+..     -+...||||.
T Consensus        20 ~gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l~~-----d~~~~GNHef   82 (257)
T cd07406          20 VGGAARFATLRKQLRKENPNTLVLFSGDVLSPSLLSTATKGKQMVPVLNALGV-----DLACFGNHEF   82 (257)
T ss_pred             cCCHHHHHHHHHHHHhcCCCEEEEECCCccCCccchhhcCCccHHHHHHhcCC-----cEEeeccccc
Confidence            456777878887765433333466679999877532     455565555532     2456799995

CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=82.79  E-value=12  Score=33.20  Aligned_cols=62  Identities=19%  Similarity=0.156  Sum_probs=56.8

Q ss_pred             HHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014212           56 FAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD  117 (429)
Q Consensus        56 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~  117 (429)
                      ..+.+.+...+|+...+.-++.+|.+......+-.++.-.|++++|...++-+-++.|++..
T Consensus         9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~   70 (273)
T COG4455           9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV   70 (273)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence            34677888999999999999999999999999999999999999999999999999998754

>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain

Probab=82.74  E-value=2.8  Score=39.13  Aligned_cols=56  Identities=16%  Similarity=0.112  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHcCCCCCCCCeEEccccccCCCCc-----HHHHHHHHHhhhhCCCeEEEecCCcccc
Q 014212          234 FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFS-----VEVILTLFAFKCMCPSAIYLSRGNHESK  294 (429)
Q Consensus       234 ~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s-----~e~~~~l~~lk~~~p~~~~~lrGNhe~~  294 (429)
                      +..+..++++.....+..-++..||.++..+.+     ...+..+-.+   -.+.  +..||||.-
T Consensus        34 ~ar~~~~v~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~~---g~D~--~~lGNHefd   94 (281)
T cd07409          34 FARVATLVKELRAENPNVLFLNAGDAFQGTLWYTLYKGNADAEFMNLL---GYDA--MTLGNHEFD   94 (281)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCCCCCcchhhhcCChHHHHHHHhc---CCCE--EEecccccc
Confidence            445555666554322222344479999876643     3344444333   2343  335999953

CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=82.33  E-value=1  Score=42.49  Aligned_cols=83  Identities=17%  Similarity=0.049  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 014212           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA   94 (429)
Q Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   94 (429)
                      ....+++....+.+.+..|+..-..+++.++....+++.++..++.+.++++|++.++.+....|++......+..+-..
T Consensus       276 ~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~  355 (372)
T KOG0546|consen  276 SIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK  355 (372)
T ss_pred             ccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence            34556778888889999999988888888899999999999999999999999999999999999988776665555444


Q ss_pred             cCC
Q 014212           95 MGK   97 (429)
Q Consensus        95 ~g~   97 (429)
                      ..+
T Consensus       356 ~~~  358 (372)
T KOG0546|consen  356 KKQ  358 (372)
T ss_pred             HHH
Confidence            433

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=82.09  E-value=7.7  Score=35.38  Aligned_cols=61  Identities=15%  Similarity=0.109  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014212           48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR------YPKGYYRRGAAYLAMGKFKEALKDFQQV  108 (429)
Q Consensus        48 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~eA~~~~~~a  108 (429)
                      ......+|..|+..|++++|++.|+.+......      .......+..|+..+|+.++.+...-+.
T Consensus       178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL  244 (247)
T PF11817_consen  178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL  244 (247)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            566778999999999999999999999765332      2356777889999999998887765544

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=81.89  E-value=9  Score=38.45  Aligned_cols=73  Identities=14%  Similarity=0.094  Sum_probs=65.1

Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014212           38 SQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL  111 (429)
Q Consensus        38 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~  111 (429)
                      ++-++.+|.|..+|+.+-.-+..+ -++++...|++.+...|..+.+|-..........+|+.-...|.+++..
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk   82 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK   82 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            667889999999999987765544 8999999999999999999999999999999999999988889888864

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=81.09  E-value=2.2  Score=43.80  Aligned_cols=127  Identities=15%  Similarity=0.114  Sum_probs=75.5

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHH----------HHHHHHHHHhhCHHHHHHHHHHHHHh----
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYY----------ANRAFAHTKLEEYGSAIQDASKAIEI----   77 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------~~lg~~~~~~g~~~~A~~~~~~al~~----   77 (429)
                      ..++.|..+|......-+++.|...|-++-.. |. ...-          ...|.+-.--|+|++|.+.|-.+=+.    
T Consensus       690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~G-ik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDLAi  767 (1189)
T KOG2041|consen  690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AG-IKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDLAI  767 (1189)
T ss_pred             CchHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cc-hhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhhhH
Confidence            45678888888888888888887777665211 00 0011          12233333345666665555332111    


Q ss_pred             ---------------------CCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------
Q 014212           78 ---------------------DPR---YPKGYYRRGAAYLAMGKFKEALKDFQQVKKL----------------------  111 (429)
Q Consensus        78 ---------------------~p~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~----------------------  111 (429)
                                           +.+   .-.++.++|..+..+.++++|.++|.++-..                      
T Consensus       768 elr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~  847 (1189)
T KOG2041|consen  768 ELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLART  847 (1189)
T ss_pred             HHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHh
Confidence                                 111   1357888888888888888888887765332                      


Q ss_pred             CCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212          112 SPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus       112 ~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      -|++.+.+..++......|.  .++|...+-
T Consensus       848 Lpe~s~llp~~a~mf~svGM--C~qAV~a~L  876 (1189)
T KOG2041|consen  848 LPEDSELLPVMADMFTSVGM--CDQAVEAYL  876 (1189)
T ss_pred             cCcccchHHHHHHHHHhhch--HHHHHHHHH
Confidence            26677777777777766665  556665544

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=80.71  E-value=24  Score=35.30  Aligned_cols=58  Identities=12%  Similarity=0.035  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHhcCHHHHHHH-------HHHHHHh-----------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 014212           17 LKALANEAFRAKKYSQAIDL-------YSQAIEL-----------NSQNAVYYANRAFAHTKLEEYGSAIQDASKA   74 (429)
Q Consensus        17 ~~~~a~~~~~~g~~~~A~~~-------~~~al~~-----------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   74 (429)
                      ....+..+.++|-.+.|+..       |+-|++.           ..+++..|..+|...+.+|+++-|..+|+++
T Consensus       298 ~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~  373 (443)
T PF04053_consen  298 GQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKA  373 (443)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            44555666666776766654       2223321           2234555666666666666666666666554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=80.61  E-value=8.7  Score=37.59  Aligned_cols=98  Identities=22%  Similarity=0.232  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 014212           16 ELKALANEAFRAKKYSQAIDLYSQAIELN---------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY   86 (429)
Q Consensus        16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   86 (429)
                      ++..+.+++.-.|||..|++.++-. +++         +-....++..|-+|+.+++|.+|+..|...+..--.....+.
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~  202 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYH  202 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            3445667778899999999987653 222         224567899999999999999999999998754221111111


Q ss_pred             HHHHHH-HHcCCHHHHHHHHHHHHHhCCC
Q 014212           87 RRGAAY-LAMGKFKEALKDFQQVKKLSPN  114 (429)
Q Consensus        87 ~la~~~-~~~g~~~eA~~~~~~al~~~p~  114 (429)
                      ....-+ .-.+..++....+--++.+.|.
T Consensus       203 ~~~~q~d~i~K~~eqMyaLlAic~~l~p~  231 (404)
T PF10255_consen  203 QRSYQYDQINKKNEQMYALLAICLSLCPQ  231 (404)
T ss_pred             cccchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence            111111 1124456666667777777785

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.58  E-value=36  Score=34.60  Aligned_cols=98  Identities=13%  Similarity=0.113  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH-HHhhCHHHHHHHHHHH-----HHhCCCChHHHHHH
Q 014212           16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQ-NAVYYANRAFAH-TKLEEYGSAIQDASKA-----IEIDPRYPKGYYRR   88 (429)
Q Consensus        16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~-~~~g~~~~A~~~~~~a-----l~~~p~~~~~~~~l   88 (429)
                      +++..-..+.+.|-+..|.++.+-.+.++|. ++.+...+-..| .+..+|+--++.++..     +..-|+.+.. ..+
T Consensus       344 ~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS-~Al  422 (665)
T KOG2422|consen  344 ALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYS-LAL  422 (665)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHH-HHH
Confidence            4445556667889999999999999999999 876655555555 4556777666666655     2333544322 345


Q ss_pred             HHHHHHcCC---HHHHHHHHHHHHHhCCC
Q 014212           89 GAAYLAMGK---FKEALKDFQQVKKLSPN  114 (429)
Q Consensus        89 a~~~~~~g~---~~eA~~~~~~al~~~p~  114 (429)
                      |..|.....   -..|...+.+|+.+.|.
T Consensus       423 A~f~l~~~~~~~rqsa~~~l~qAl~~~P~  451 (665)
T KOG2422|consen  423 ARFFLRKNEEDDRQSALNALLQALKHHPL  451 (665)
T ss_pred             HHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence            556665555   46799999999998875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	429
1wao_1	477	Pp5 Structure Length = 477		1e-142
1s95_A	333	Structure Of SerineTHREONINE PROTEIN PHOSPHATASE 5		4e-95
3h60_A	315	Catalytic Domain Of Human SerineTHREONINE PHOSPHATA		1e-93
3icf_A	335	Structure Of Protein SerineTHREONINE PHOSPHATASE FR		2e-62
2o8a_A	329	Rat Pp1cgamma Complexed With Mouse Inhibitor-2 Leng		8e-50
1jk7_A	323	Crystal Structure Of The Tumor-Promoter Okadaic Aci		9e-50
4g9j_A	331	Protein SerTHR PHOSPHATASE-1 In Complex With Cell-P		1e-49
1fjm_A	330	Protein SerineTHREONINE PHOSPHATASE-1 (Alpha Isofor		1e-49
3n5u_B	300	Crystal Structure Of An Rb C-Terminal Peptide Bound		1e-49
3egg_A	329	Crystal Structure Of A Complex Between Protein Phos		1e-49
3v4y_A	306	Crystal Structure Of The First Nuclear Pp1 Holoenzy		1e-49
3e7a_A	299	Crystal Structure Of Protein Phosphatase-1 Bound To		2e-49
1u32_A	293	Crystal Structure Of A Protein Phosphatase-1: Calci		6e-49
1s70_A	330	Complex Between Protein Ser/thr Phosphatase-1 (delt		3e-48
1aui_A	521	Human Calcineurin Heterodimer Length = 521		2e-47
1tco_A	375	Ternary Complex Of A Calcineurin A Fragment, Calcin		1e-46
1mf8_A	373	Crystal Structure Of Human Calcineurin Complexed Wi		1e-46
2p6b_A	383	Crystal Structure Of Human Calcineurin In Complex W		1e-46
3ll8_A	357	Crystal Structure Of Calcineurin In Complex With Ak		1e-46
2jog_A	327	Structure Of The Calcineurin-Nfat Complex Length =		1e-46
1m63_A	372	Crystal Structure Of Calcineurin-Cyclophilin-Cyclos		1e-46
3p71_C	304	Crystal Structure Of The Complex Of Lcmt-1 And Pp2a		1e-43
2ie3_C	309	Structure Of The Protein Phosphatase 2a Core Enzyme		1e-43
2nyl_C	293	Crystal Structure Of Protein Phosphatase 2a (Pp2a)		1e-43
2ie4_C	309	Structure Of The Protein Phosphatase 2a Core Enzyme		1e-43
3c5w_C	310	Complex Between Pp2a-Specific Methylesterase Pme-1		2e-43
3fga_C	309	Structural Basis Of Pp2a And Sgo Interaction Length		4e-43
2iae_C	309	Crystal Structure Of A Protein Phosphatase 2a (Pp2a		5e-43
1a17_A	166	Tetratricopeptide Repeats Of Protein Phosphatase 5		5e-41
2bug_A	140	Solution Structure Of The Tpr Domain From Protein P		6e-33
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		7e-17
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		3e-16
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		2e-13
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		8e-13
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		1e-12
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		4e-12
1elw_A	118	Crystal Structure Of The Tpr1 Domain Of Hop In Comp		1e-11
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		3e-11
3sz7_A	164	Crystal Structure Of The Sgt2 Tpr Domain From Asper		3e-11
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		4e-11
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		1e-10
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		2e-10
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		4e-10
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		7e-10
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		2e-08
2gw1_A	514	Crystal Structure Of The Yeast Tom70 Length = 514		2e-08
3fp2_A	537	Crystal Structure Of Tom71 Complexed With Hsp82 C-T		2e-08
3fp2_A	537	Crystal Structure Of Tom71 Complexed With Hsp82 C-T		5e-05
3lca_A	533	Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term		2e-08
3lca_A	533	Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term		5e-05
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		5e-08
3upv_A	126	Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length =		9e-08
3uq3_A	258	Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length =		2e-07
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		2e-06
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		3e-06
2avp_A	70	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		6e-05
2avp_A	70	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		9e-05
3pe3_A	723	Structure Of Human O-Glcnac Transferase And Its Com		7e-05
2fbn_A	198	Plasmodium Falciparum Putative Fk506-Binding Protei		8e-05
4gcn_A	127	N-Terminal Domain Of Stress-Induced Protein-1 (Sti-		1e-04
1elr_A	131	Crystal Structure Of The Tpr2a Domain Of Hop In Com		2e-04
3esk_A	129	Structure Of Hop Tpr2a Domain In Complex With The N		2e-04
2l6j_A	111	Tah1 Complexed By Meevd Length = 111		4e-04

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score =  501 bits (1291), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 240/434 (55%), Positives = 316/434 (72%), Gaps = 17/434 (3%)
Query: 9   SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAI 68
            ++ RAEELK  AN+ F+AK Y  AI  YSQAIELN  NA+YY NR+ A+ + E YG A+
Sbjct: 1   GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYAL 60
Query: 69  QDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA 128
            DA++AIE+D +Y KGYYRR A+ +A+GKF+ AL+D++ V K+ P+D DA  K +EC K 
Sbjct: 61  GDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 120
Query: 129 VKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQ 188
           VK+  FE AIA  E +R SV DS+D +S+ +E +YSG ++E   +T+ F+K++M  +K+Q
Sbjct: 121 VKQKAFERAIAGDEHKR-SVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQ 179
Query: 189 KCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPS 248
           K LH++ A+QI++Q +E+L  L +LV+  + + +  TVCGD HGQFYDLLNIFELNGLPS
Sbjct: 180 KKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQFYDLLNIFELNGLPS 239
Query: 249 EENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRS 308
           E NPY+FNGDFVDRGSFSVEVILTLF FK + P   +L RGNHE+ +MN+IYGFEGEV++
Sbjct: 240 ETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVKA 299
Query: 309 KLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLM 368
           K +    ELF+EVF  LPLA  +N KV ++HGGLFS DGV L DI+ I+R  +PP+ G M
Sbjct: 300 KYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSEDGVTLDDIRKIERNRQPPDSGPM 359
Query: 369 CELLWSDPQPLPGRGPSKRGV----------------GLSFVVRSHEVKDEGYEIEHDGK 412
           C+LLWSDPQP  GR  SKRGV                 L +++RSHEVK EGYE+ H G+
Sbjct: 360 CDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFLEENNLDYIIRSHEVKAEGYEVAHGGR 419
Query: 413 LITVFSAPNYCDQV 426
            +TVFSAPNYCDQ+
Sbjct: 420 CVTVFSAPNYCDQM 433

>pdb|1S95|A Chain A, Structure Of SerineTHREONINE PROTEIN PHOSPHATASE 5 Length = 333

Iteration: 1
 Score =  345 bits (884), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 162/287 (56%), Positives = 211/287 (73%), Gaps = 16/287 (5%)
Query: 156 SIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVD 215
           S+ +E +YSG ++E   +T+ F+K++M  +K+QK LH++ A+QI++Q +E+L  L +LV+
Sbjct: 3   SMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVE 62
Query: 216 IDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFA 275
             + + +  TVCGD HGQFYDLLNIFELNGLPSE NPY+FNGDFVDRGSFSVEVILTLF 
Sbjct: 63  TTLKETEKITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFG 122
Query: 276 FKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKV 335
           FK + P   +L RGNHE+ +MN+IYGFEGEV++K +    ELF+EVF  LPLA  +N KV
Sbjct: 123 FKLLYPDHFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKV 182
Query: 336 FVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGV------ 389
            ++HGGLFS DGV L DI+ I+R  +PP+ G MC+LLWSDPQP  GR  SKRGV      
Sbjct: 183 LIMHGGLFSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGP 242
Query: 390 ----------GLSFVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQV 426
                      L +++RSHEVK EGYE+ H G+ +TVFSAPNYCDQ+
Sbjct: 243 DVTKAFLEENNLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQM 289

>pdb|3H60|A Chain A, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5 (Pp5c)with Two Mn2+ Atoms Length = 315

Iteration: 1
 Score =  340 bits (871), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 160/280 (57%), Positives = 206/280 (73%), Gaps = 16/280 (5%)
Query: 163 YSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGK 222
           YSG ++E   +T+ F+K++M  +K+QK LH++ A+QI++Q +E+L  L +LV+  + + +
Sbjct: 1   YSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETE 60
Query: 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPS 282
             TVCGD HGQFYDLLNIFELNGLPSE NPY+FNGDFVDRGSFSVEVILTLF FK + P 
Sbjct: 61  KITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPD 120
Query: 283 AIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGL 342
             +L RGNHE+ +MN+IYGFEGEV++K +    ELF+EVF  LPLA  +N KV ++HGGL
Sbjct: 121 HFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGL 180
Query: 343 FSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGV------------- 389
           FS DGV L DI+ I+R  +PP+ G MC+LLWSDPQP  GR  SKRGV             
Sbjct: 181 FSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFL 240
Query: 390 ---GLSFVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQV 426
               L +++RSHEVK EGYE+ H G+ +TVFSAPNYCDQ+
Sbjct: 241 EENNLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQM 280

>pdb|3ICF|A Chain A, Structure Of Protein SerineTHREONINE PHOSPHATASE FROM SACCHAROMYCES Cerevisiae With Similarity To Human Phosphatase Pp5 Length = 335

Iteration: 1
 Score =  236 bits (601), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 128/287 (44%), Positives = 169/287 (58%), Gaps = 23/287 (8%)
Query: 163 YSGARIEGDVITLDFVKKMMDD-FKNQKCLHKRYAFQIVLQTREMLRALPSLVDID---I 218
           + GA+I+    + +F+ K ++D F   K L K+Y   I+     + R  PS V+++    
Sbjct: 4   FKGAKIKN--XSQEFISKXVNDLFLKGKYLPKKYVAAIISHADTLFRQEPSXVELENNST 61
Query: 219 PDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKC 278
           PD K  +VCGD HGQFYD+LN+F   G    ++ YLFNGDFVDRGS+S EV L  +  K 
Sbjct: 62  PDVK-ISVCGDTHGQFYDVLNLFRKFGKVGPKHTYLFNGDFVDRGSWSCEVALLFYCLKI 120
Query: 279 MCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVV 338
           + P+  +L+RGNHES + NKIYGFE E + K S+     FA+ F  LPLA ++N    V 
Sbjct: 121 LHPNNFFLNRGNHESDNXNKIYGFEDECKYKYSQRIFNXFAQSFESLPLATLINNDYLVX 180
Query: 339 HGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF----- 393
           HGGL S     LSD K IDRF +PP +G   ELLW+DPQ   G GPS+RG+G +F     
Sbjct: 181 HGGLPSDPSATLSDFKNIDRFAQPPRDGAFXELLWADPQEANGXGPSQRGLGHAFGPDIT 240
Query: 394 -----------VVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQVTKL 429
                      + RSHE++  G + E  GKL TVFSAPNYCD    L
Sbjct: 241 DRFLRNNKLRKIFRSHELRXGGVQFEQKGKLXTVFSAPNYCDSQGNL 287

>pdb|2O8A|A Chain A, Rat Pp1cgamma Complexed With Mouse Inhibitor-2 Length = 329

Iteration: 1
 Score =  194 bits (493), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 99/244 (40%), Positives = 149/244 (61%), Gaps = 23/244 (9%)
Query: 199 IVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGD 258
           + L++RE+  + P L++++ P      +CGD+HGQ+YDLL +FE  G P E N YLF GD
Sbjct: 44  LCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPESN-YLFLGD 98
Query: 259 FVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELF 318
           +VDRG  S+E I  L A+K   P   +L RGNHE  S+N+IYGF  E + + +    + F
Sbjct: 99  YVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTF 158
Query: 319 AEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDP-Q 377
            + F CLP+A ++++K+F  HGGL S D   +  I+ I R  + P++GL+C+LLWSDP +
Sbjct: 159 TDCFNCLPIAAIVDEKIFCCHGGL-SPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDK 217
Query: 378 PLPGRGPSKRGVGLSF----------------VVRSHEVKDEGYEIEHDGKLITVFSAPN 421
            + G G + RGV  +F                + R+H+V ++GYE     +L+T+FSAPN
Sbjct: 218 DVLGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPN 277
Query: 422 YCDQ 425
           YC +
Sbjct: 278 YCGE 281

>pdb|1JK7|A Chain A, Crystal Structure Of The Tumor-Promoter Okadaic Acid Bound To Protein Phosphatase-1 Length = 323

Iteration: 1
 Score =  194 bits (492), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 99/244 (40%), Positives = 149/244 (61%), Gaps = 23/244 (9%)
Query: 199 IVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGD 258
           + L++RE+  + P L++++ P      +CGD+HGQ+YDLL +FE  G P E N YLF GD
Sbjct: 38  LCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPESN-YLFLGD 92
Query: 259 FVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELF 318
           +VDRG  S+E I  L A+K   P   +L RGNHE  S+N+IYGF  E + + +    + F
Sbjct: 93  YVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTF 152
Query: 319 AEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDP-Q 377
            + F CLP+A ++++K+F  HGGL S D   +  I+ I R  + P++GL+C+LLWSDP +
Sbjct: 153 TDCFNCLPIAAIVDEKIFCCHGGL-SPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDK 211
Query: 378 PLPGRGPSKRGVGLSF----------------VVRSHEVKDEGYEIEHDGKLITVFSAPN 421
            + G G + RGV  +F                + R+H+V ++GYE     +L+T+FSAPN
Sbjct: 212 DVLGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPN 271
Query: 422 YCDQ 425
           YC +
Sbjct: 272 YCGE 275

>pdb|4G9J|A Chain A, Protein SerTHR PHOSPHATASE-1 In Complex With Cell-Permeable Peptide Length = 331

Iteration: 1
 Score =  194 bits (492), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 99/244 (40%), Positives = 149/244 (61%), Gaps = 23/244 (9%)
Query: 199 IVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGD 258
           + L++RE+  + P L++++ P      +CGD+HGQ+YDLL +FE  G P E N YLF GD
Sbjct: 39  LCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPESN-YLFLGD 93
Query: 259 FVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELF 318
           +VDRG  S+E I  L A+K   P   +L RGNHE  S+N+IYGF  E + + +    + F
Sbjct: 94  YVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTF 153
Query: 319 AEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDP-Q 377
            + F CLP+A ++++K+F  HGGL S D   +  I+ I R  + P++GL+C+LLWSDP +
Sbjct: 154 TDCFNCLPIAAIVDEKIFCCHGGL-SPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDK 212
Query: 378 PLPGRGPSKRGVGLSF----------------VVRSHEVKDEGYEIEHDGKLITVFSAPN 421
            + G G + RGV  +F                + R+H+V ++GYE     +L+T+FSAPN
Sbjct: 213 DVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPN 272
Query: 422 YCDQ 425
           YC +
Sbjct: 273 YCGE 276

>pdb|1FJM|A Chain A, Protein SerineTHREONINE PHOSPHATASE-1 (Alpha Isoform, Type 1) Complexed With Microcystin-Lr Toxin Length = 330

Iteration: 1
 Score =  194 bits (492), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 99/244 (40%), Positives = 149/244 (61%), Gaps = 23/244 (9%)
Query: 199 IVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGD 258
           + L++RE+  + P L++++ P      +CGD+HGQ+YDLL +FE  G P E N YLF GD
Sbjct: 38  LCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPESN-YLFLGD 92
Query: 259 FVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELF 318
           +VDRG  S+E I  L A+K   P   +L RGNHE  S+N+IYGF  E + + +    + F
Sbjct: 93  YVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTF 152
Query: 319 AEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDP-Q 377
            + F CLP+A ++++K+F  HGGL S D   +  I+ I R  + P++GL+C+LLWSDP +
Sbjct: 153 TDCFNCLPIAAIVDEKIFCCHGGL-SPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDK 211
Query: 378 PLPGRGPSKRGVGLSF----------------VVRSHEVKDEGYEIEHDGKLITVFSAPN 421
            + G G + RGV  +F                + R+H+V ++GYE     +L+T+FSAPN
Sbjct: 212 DVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPN 271
Query: 422 YCDQ 425
           YC +
Sbjct: 272 YCGE 275

>pdb|3EGG|A Chain A, Crystal Structure Of A Complex Between Protein Phosphatase 1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of Spinophilin Length = 329

Iteration: 1
 Score =  193 bits (491), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 99/244 (40%), Positives = 149/244 (61%), Gaps = 23/244 (9%)
Query: 199 IVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGD 258
           + L++RE+  + P L++++ P      +CGD+HGQ+YDLL +FE  G P E N YLF GD
Sbjct: 37  LCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPESN-YLFLGD 91
Query: 259 FVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELF 318
           +VDRG  S+E I  L A+K   P   +L RGNHE  S+N+IYGF  E + + +    + F
Sbjct: 92  YVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTF 151
Query: 319 AEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDP-Q 377
            + F CLP+A ++++K+F  HGGL S D   +  I+ I R  + P++GL+C+LLWSDP +
Sbjct: 152 TDCFNCLPIAAIVDEKIFCCHGGL-SPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDK 210
Query: 378 PLPGRGPSKRGVGLSF----------------VVRSHEVKDEGYEIEHDGKLITVFSAPN 421
            + G G + RGV  +F                + R+H+V ++GYE     +L+T+FSAPN
Sbjct: 211 DVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPN 270
Query: 422 YCDQ 425
           YC +
Sbjct: 271 YCGE 274

>pdb|3V4Y|A Chain A, Crystal Structure Of The First Nuclear Pp1 Holoenzyme Length = 306

Iteration: 1
 Score =  193 bits (491), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 99/244 (40%), Positives = 149/244 (61%), Gaps = 23/244 (9%)
Query: 199 IVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGD 258
           + L++RE+  + P L++++ P      +CGD+HGQ+YDLL +FE  G P E N YLF GD
Sbjct: 37  LCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPESN-YLFLGD 91
Query: 259 FVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELF 318
           +VDRG  S+E I  L A+K   P   +L RGNHE  S+N+IYGF  E + + +    + F
Sbjct: 92  YVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTF 151
Query: 319 AEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDP-Q 377
            + F CLP+A ++++K+F  HGGL S D   +  I+ I R  + P++GL+C+LLWSDP +
Sbjct: 152 TDCFNCLPIAAIVDEKIFCCHGGL-SPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDK 210
Query: 378 PLPGRGPSKRGVGLSF----------------VVRSHEVKDEGYEIEHDGKLITVFSAPN 421
            + G G + RGV  +F                + R+H+V ++GYE     +L+T+FSAPN
Sbjct: 211 DVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPN 270
Query: 422 YCDQ 425
           YC +
Sbjct: 271 YCGE 274

>pdb|3E7A|A Chain A, Crystal Structure Of Protein Phosphatase-1 Bound To The Natural Toxin Nodularin-R Length = 299

Iteration: 1
 Score =  193 bits (490), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 99/244 (40%), Positives = 149/244 (61%), Gaps = 23/244 (9%)
Query: 199 IVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGD 258
           + L++RE+  + P L++++ P      +CGD+HGQ+YDLL +FE  G P E N YLF GD
Sbjct: 37  LCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPESN-YLFLGD 91
Query: 259 FVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELF 318
           +VDRG  S+E I  L A+K   P   +L RGNHE  S+N+IYGF  E + + +    + F
Sbjct: 92  YVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTF 151
Query: 319 AEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDP-Q 377
            + F CLP+A ++++K+F  HGGL S D   +  I+ I R  + P++GL+C+LLWSDP +
Sbjct: 152 TDCFNCLPIAAIVDEKIFCCHGGL-SPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDK 210
Query: 378 PLPGRGPSKRGVGLSF----------------VVRSHEVKDEGYEIEHDGKLITVFSAPN 421
            + G G + RGV  +F                + R+H+V ++GYE     +L+T+FSAPN
Sbjct: 211 DVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPN 270
Query: 422 YCDQ 425
           YC +
Sbjct: 271 YCGE 274

>pdb|1U32|A Chain A, Crystal Structure Of A Protein Phosphatase-1: Calcineurin Hybrid Bound To Okadaic Acid Length = 293

Iteration: 1
 Score =  191 bits (486), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 99/243 (40%), Positives = 148/243 (60%), Gaps = 23/243 (9%)
Query: 199 IVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGD 258
           + L++RE+  + P L++++ P      +CGD+HGQ+YDLL +FE  G P E N YLF GD
Sbjct: 33  LCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPESN-YLFLGD 87
Query: 259 FVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELF 318
           +VDRG  S+E I  L A+K   P   +L RGNHE  S+N+IYGF  E + + +    + F
Sbjct: 88  YVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTF 147
Query: 319 AEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDP-Q 377
            + F CLP+A ++++K+F  HGGL S D   +  I+ I R  + P++GL+C+LLWSDP +
Sbjct: 148 TDCFNCLPIAAIVDEKIFCCHGGL-SPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDK 206
Query: 378 PLPGRGPSKRGVGLSF----------------VVRSHEVKDEGYEIEHDGKLITVFSAPN 421
            + G G + RGV  +F                + R+H+V ++GYE     +L+T+FSAPN
Sbjct: 207 DVLGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPN 266
Query: 422 YCD 424
           Y D
Sbjct: 267 YLD 269

>pdb|1S70|A Chain A, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 330

Iteration: 1
 Score =  189 bits (479), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 97/244 (39%), Positives = 147/244 (60%), Gaps = 23/244 (9%)
Query: 199 IVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGD 258
           + +++RE+  + P L++++ P      +CGD+HGQ+ DLL +FE  G P E N YLF GD
Sbjct: 40  LCIKSREIFLSQPILLELEAP----LKICGDIHGQYTDLLRLFEYGGFPPEAN-YLFLGD 94
Query: 259 FVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELF 318
           +VDRG  S+E I  L A+K   P   +L RGNHE  S+N+IYGF  E + + +    + F
Sbjct: 95  YVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNIKLWKTF 154
Query: 319 AEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDP-Q 377
            + F CLP+A ++++K+F  HGGL S D   +  I+ I R  + P+ GL+C+LLWSDP +
Sbjct: 155 TDCFNCLPIAAIVDEKIFCCHGGL-SPDLQSMEQIRRIMRPTDVPDTGLLCDLLWSDPDK 213
Query: 378 PLPGRGPSKRGVGLSF----------------VVRSHEVKDEGYEIEHDGKLITVFSAPN 421
            + G G + RGV  +F                + R+H+V ++GYE     +L+T+FSAPN
Sbjct: 214 DVQGWGENDRGVSFTFGADVVSKFLNRHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPN 273
Query: 422 YCDQ 425
           YC +
Sbjct: 274 YCGE 277

>pdb|1AUI|A Chain A, Human Calcineurin Heterodimer Length = 521

Iteration: 1
 Score =  186 bits (472), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 104/264 (39%), Positives = 149/264 (56%), Gaps = 36/264 (13%)
Query: 191 LHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEE 250
           L +  A +I+ +   +LR   +L+DID P     TVCGD+HGQF+DL+ +FE+ G P+  
Sbjct: 56  LEESVALRIITEGASILRQEKNLLDIDAP----VTVCGDIHGQFFDLMKLFEVGGSPANT 111
Query: 251 NPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKL 310
             YLF GD+VDRG FS+E +L L+A K + P  ++L RGNHE + + + + F+ E + K 
Sbjct: 112 R-YLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKY 170
Query: 311 SETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCE 370
           SE   +   + F CLPLA ++NQ+   VHGGL S +   L DI+ +DRF EPP  G MC+
Sbjct: 171 SERVYDACMDAFDCLPLAALMNQQFLCVHGGL-SPEINTLDDIRKLDRFKEPPAYGPMCD 229
Query: 371 LLWSDPQPLPGRGPSK--------RGV----------------GLSFVVRSHEVKDEGYE 406
           +LWSDP    G   ++        RG                  L  ++R+HE +D GY 
Sbjct: 230 ILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGYR 289
Query: 407 IEHDGK------LITVFSAPNYCD 424
           +    +      LIT+FSAPNY D
Sbjct: 290 MYRKSQTTGFPSLITIFSAPNYLD 313

>pdb|1TCO|A Chain A, Ternary Complex Of A Calcineurin A Fragment, Calcineurin B, Fkbp12 And The Immunosuppressant Drug Fk506 (tacrolimus) Length = 375

Iteration: 1
 Score =  184 bits (466), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 103/264 (39%), Positives = 149/264 (56%), Gaps = 36/264 (13%)
Query: 191 LHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEE 250
           L +  A +I+ +   +LR   +L+DID P     TVCGD+HGQF+DL+ +FE+ G P+  
Sbjct: 39  LEETVALRIITEGASILRQEKNLLDIDAP----VTVCGDIHGQFFDLMKLFEVGGSPANT 94
Query: 251 NPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKL 310
             YLF GD+VDRG FS+E +L L+A K + P  ++L RGNHE + + + + F+ E + K 
Sbjct: 95  R-YLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKY 153
Query: 311 SETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCE 370
           SE   +   + F CLPLA ++NQ+   VHGGL S +   L DI+ +DRF EPP  G MC+
Sbjct: 154 SERVYDACMDAFDCLPLAALMNQQFLCVHGGL-SPEINTLDDIRKLDRFKEPPAYGPMCD 212
Query: 371 LLWSDPQPLPGRGPSK--------RGVGLSF----------------VVRSHEVKDEGYE 406
           +LWSDP    G   ++        RG    +                ++R+HE +D GY 
Sbjct: 213 ILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGYR 272
Query: 407 IEHDGK------LITVFSAPNYCD 424
           +    +      LIT+FSAPNY D
Sbjct: 273 MYRKSQTTGFPSLITIFSAPNYLD 296

>pdb|1MF8|A Chain A, Crystal Structure Of Human Calcineurin Complexed With Cyclosporin A And Human Cyclophilin Length = 373

Iteration: 1
 Score =  184 bits (466), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 103/264 (39%), Positives = 149/264 (56%), Gaps = 36/264 (13%)
Query: 191 LHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEE 250
           L +  A +I+ +   +LR   +L+DID P     TVCGD+HGQF+DL+ +FE+ G P+  
Sbjct: 37  LEESVALRIITEGASILRQEKNLLDIDAP----VTVCGDIHGQFFDLMKLFEVGGSPANT 92
Query: 251 NPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKL 310
             YLF GD+VDRG FS+E +L L+A K + P  ++L RGNHE + + + + F+ E + K 
Sbjct: 93  R-YLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKY 151
Query: 311 SETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCE 370
           SE   +   + F CLPLA ++NQ+   VHGGL S +   L DI+ +DRF EPP  G MC+
Sbjct: 152 SERVYDACMDAFDCLPLAALMNQQFLCVHGGL-SPEINTLDDIRKLDRFKEPPAYGPMCD 210
Query: 371 LLWSDPQPLPGRGPSK--------RGVGLSF----------------VVRSHEVKDEGYE 406
           +LWSDP    G   ++        RG    +                ++R+HE +D GY 
Sbjct: 211 ILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGYR 270
Query: 407 IEHDGK------LITVFSAPNYCD 424
           +    +      LIT+FSAPNY D
Sbjct: 271 MYRKSQTTGFPSLITIFSAPNYLD 294

>pdb|2P6B|A Chain A, Crystal Structure Of Human Calcineurin In Complex With Pvivit Peptide Length = 383

Iteration: 1
 Score =  184 bits (466), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 103/264 (39%), Positives = 149/264 (56%), Gaps = 36/264 (13%)
Query: 191 LHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEE 250
           L +  A +I+ +   +LR   +L+DID P     TVCGD+HGQF+DL+ +FE+ G P+  
Sbjct: 59  LEESVALRIITEGASILRQEKNLLDIDAP----VTVCGDIHGQFFDLMKLFEVGGSPANT 114
Query: 251 NPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKL 310
             YLF GD+VDRG FS+E +L L+A K + P  ++L RGNHE + + + + F+ E + K 
Sbjct: 115 R-YLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKY 173
Query: 311 SETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCE 370
           SE   +   + F CLPLA ++NQ+   VHGGL S +   L DI+ +DRF EPP  G MC+
Sbjct: 174 SERVYDACMDAFDCLPLAALMNQQFLCVHGGL-SPEINTLDDIRKLDRFKEPPAYGPMCD 232
Query: 371 LLWSDPQPLPGRGPSK--------RGVGLSF----------------VVRSHEVKDEGYE 406
           +LWSDP    G   ++        RG    +                ++R+HE +D GY 
Sbjct: 233 ILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGYR 292
Query: 407 IEHDGK------LITVFSAPNYCD 424
           +    +      LIT+FSAPNY D
Sbjct: 293 MYRKSQTTGFPSLITIFSAPNYLD 316

>pdb|3LL8|A Chain A, Crystal Structure Of Calcineurin In Complex With Akap79 Peptide Length = 357

Iteration: 1
 Score =  183 bits (465), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 103/264 (39%), Positives = 149/264 (56%), Gaps = 36/264 (13%)
Query: 191 LHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEE 250
           L +  A +I+ +   +LR   +L+DID P     TVCGD+HGQF+DL+ +FE+ G P+  
Sbjct: 43  LEESVALRIITEGASILRQEKNLLDIDAP----VTVCGDIHGQFFDLMKLFEVGGSPANT 98
Query: 251 NPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKL 310
             YLF GD+VDRG FS+E +L L+A K + P  ++L RGNHE + + + + F+ E + K 
Sbjct: 99  R-YLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKY 157
Query: 311 SETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCE 370
           SE   +   + F CLPLA ++NQ+   VHGGL S +   L DI+ +DRF EPP  G MC+
Sbjct: 158 SERVYDACMDAFDCLPLAALMNQQFLCVHGGL-SPEINTLDDIRKLDRFKEPPAYGPMCD 216
Query: 371 LLWSDPQPLPGRGPSK--------RGVGLSF----------------VVRSHEVKDEGYE 406
           +LWSDP    G   ++        RG    +                ++R+HE +D GY 
Sbjct: 217 ILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGYR 276
Query: 407 IEHDGK------LITVFSAPNYCD 424
           +    +      LIT+FSAPNY D
Sbjct: 277 MYRKSQTTGFPSLITIFSAPNYLD 300

>pdb|2JOG|A Chain A, Structure Of The Calcineurin-Nfat Complex Length = 327

Iteration: 1
 Score =  183 bits (465), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 103/264 (39%), Positives = 149/264 (56%), Gaps = 36/264 (13%)
Query: 191 LHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEE 250
           L +  A +I+ +   +LR   +L+DID P     TVCGD+HGQF+DL+ +FE+ G P+  
Sbjct: 36  LEESVALRIITEGASILRQEKNLLDIDAP----VTVCGDIHGQFFDLMKLFEVGGSPANT 91
Query: 251 NPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKL 310
             YLF GD+VDRG FS+E +L L+A K + P  ++L RGNHE + + + + F+ E + K 
Sbjct: 92  R-YLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKY 150
Query: 311 SETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCE 370
           SE   +   + F CLPLA ++NQ+   VHGGL S +   L DI+ +DRF EPP  G MC+
Sbjct: 151 SERVYDACMDAFDCLPLAALMNQQFLCVHGGL-SPEINTLDDIRKLDRFKEPPAYGPMCD 209
Query: 371 LLWSDPQPLPGRGPSK--------RGVGLSF----------------VVRSHEVKDEGYE 406
           +LWSDP    G   ++        RG    +                ++R+HE +D GY 
Sbjct: 210 ILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGYR 269
Query: 407 IEHDGK------LITVFSAPNYCD 424
           +    +      LIT+FSAPNY D
Sbjct: 270 MYRKSQTTGFPSLITIFSAPNYLD 293

>pdb|1M63|A Chain A, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin Shows Common But Distinct Recognition Of Immunophilin-Drug Complexes Length = 372

Iteration: 1
 Score =  183 bits (465), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 103/264 (39%), Positives = 149/264 (56%), Gaps = 36/264 (13%)
Query: 191 LHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEE 250
           L +  A +I+ +   +LR   +L+DID P     TVCGD+HGQF+DL+ +FE+ G P+  
Sbjct: 56  LEESVALRIITEGASILRQEKNLLDIDAP----VTVCGDIHGQFFDLMKLFEVGGSPANT 111
Query: 251 NPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKL 310
             YLF GD+VDRG FS+E +L L+A K + P  ++L RGNHE + + + + F+ E + K 
Sbjct: 112 R-YLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKY 170
Query: 311 SETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCE 370
           SE   +   + F CLPLA ++NQ+   VHGGL S +   L DI+ +DRF EPP  G MC+
Sbjct: 171 SERVYDACMDAFDCLPLAALMNQQFLCVHGGL-SPEINTLDDIRKLDRFKEPPAYGPMCD 229
Query: 371 LLWSDPQPLPGRGPSK--------RGVGLSF----------------VVRSHEVKDEGYE 406
           +LWSDP    G   ++        RG    +                ++R+HE +D GY 
Sbjct: 230 ILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGYR 289
Query: 407 IEHDGK------LITVFSAPNYCD 424
           +    +      LIT+FSAPNY D
Sbjct: 290 MYRKSQTTGFPSLITIFSAPNYLD 313

>pdb|3P71|C Chain C, Crystal Structure Of The Complex Of Lcmt-1 And Pp2a Length = 304

Iteration: 1
 Score =  174 bits (440), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 94/217 (43%), Positives = 127/217 (58%), Gaps = 21/217 (9%)
Query: 225 TVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAI 284
           TVCGDVHGQF+DL+ +F + G   + N YLF GD+VDRG +SVE +  L A K      I
Sbjct: 53  TVCGDVHGQFHDLMELFRIGGKSPDTN-YLFMGDYVDRGYYSVETVTLLVALKVRYRERI 111
Query: 285 YLSRGNHESKSMNKIYGFEGEVRSKLSETFV-ELFAEVFCCLPLAHVLNQKVFVVHGGLF 343
            + RGNHES+ + ++YGF  E   K     V + F ++F  LPL  +++ ++F +HGGL 
Sbjct: 112 TILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLS 171
Query: 344 -SVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF--------- 393
            S+D   L  I+ +DR  E P EG MC+LLWSDP    G G S RG G +F         
Sbjct: 172 PSID--TLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFN 229
Query: 394 -------VVRSHEVKDEGYEIEHDGKLITVFSAPNYC 423
                  V R+H++  EGY   HD  ++T+FSAPNYC
Sbjct: 230 HANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYC 266

>pdb|2IE3|C Chain C, Structure Of The Protein Phosphatase 2a Core Enzyme Bound To Tumor- Inducing Toxins Length = 309

Iteration: 1
 Score =  173 bits (439), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 94/217 (43%), Positives = 127/217 (58%), Gaps = 21/217 (9%)
Query: 225 TVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAI 284
           TVCGDVHGQF+DL+ +F + G   + N YLF GD+VDRG +SVE +  L A K      I
Sbjct: 53  TVCGDVHGQFHDLMELFRIGGKSPDTN-YLFMGDYVDRGYYSVETVTLLVALKVRYRERI 111
Query: 285 YLSRGNHESKSMNKIYGFEGEVRSKLSETFV-ELFAEVFCCLPLAHVLNQKVFVVHGGLF 343
            + RGNHES+ + ++YGF  E   K     V + F ++F  LPL  +++ ++F +HGGL 
Sbjct: 112 TILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLS 171
Query: 344 -SVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF--------- 393
            S+D   L  I+ +DR  E P EG MC+LLWSDP    G G S RG G +F         
Sbjct: 172 PSID--TLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFN 229
Query: 394 -------VVRSHEVKDEGYEIEHDGKLITVFSAPNYC 423
                  V R+H++  EGY   HD  ++T+FSAPNYC
Sbjct: 230 HANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYC 266

>pdb|2NYL|C Chain C, Crystal Structure Of Protein Phosphatase 2a (Pp2a) Holoenzyme With The Catalytic Subunit Carboxyl Terminus Truncated Length = 293

Iteration: 1
 Score =  173 bits (439), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 94/217 (43%), Positives = 127/217 (58%), Gaps = 21/217 (9%)
Query: 225 TVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAI 284
           TVCGDVHGQF+DL+ +F + G   + N YLF GD+VDRG +SVE +  L A K      I
Sbjct: 52  TVCGDVHGQFHDLMELFRIGGKSPDTN-YLFMGDYVDRGYYSVETVTLLVALKVRYRERI 110
Query: 285 YLSRGNHESKSMNKIYGFEGEVRSKLSETFV-ELFAEVFCCLPLAHVLNQKVFVVHGGLF 343
            + RGNHES+ + ++YGF  E   K     V + F ++F  LPL  +++ ++F +HGGL 
Sbjct: 111 TILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLS 170
Query: 344 -SVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF--------- 393
            S+D   L  I+ +DR  E P EG MC+LLWSDP    G G S RG G +F         
Sbjct: 171 PSID--TLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFN 228
Query: 394 -------VVRSHEVKDEGYEIEHDGKLITVFSAPNYC 423
                  V R+H++  EGY   HD  ++T+FSAPNYC
Sbjct: 229 HANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYC 265

>pdb|2IE4|C Chain C, Structure Of The Protein Phosphatase 2a Core Enzyme Bound To Okadaic Acid Length = 309

Iteration: 1
 Score =  173 bits (439), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 94/217 (43%), Positives = 127/217 (58%), Gaps = 21/217 (9%)
Query: 225 TVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAI 284
           TVCGDVHGQF+DL+ +F + G   + N YLF GD+VDRG +SVE +  L A K      I
Sbjct: 53  TVCGDVHGQFHDLMELFRIGGKSPDTN-YLFMGDYVDRGYYSVETVTLLVALKVRYRERI 111
Query: 285 YLSRGNHESKSMNKIYGFEGEVRSKLSETFV-ELFAEVFCCLPLAHVLNQKVFVVHGGLF 343
            + RGNHES+ + ++YGF  E   K     V + F ++F  LPL  +++ ++F +HGGL 
Sbjct: 112 TILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLS 171
Query: 344 -SVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF--------- 393
            S+D   L  I+ +DR  E P EG MC+LLWSDP    G G S RG G +F         
Sbjct: 172 PSID--TLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFN 229
Query: 394 -------VVRSHEVKDEGYEIEHDGKLITVFSAPNYC 423
                  V R+H++  EGY   HD  ++T+FSAPNYC
Sbjct: 230 HANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYC 266

>pdb|3C5W|C Chain C, Complex Between Pp2a-Specific Methylesterase Pme-1 And Pp2a Core Enzyme Length = 310

Iteration: 1
 Score =  173 bits (439), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 94/217 (43%), Positives = 127/217 (58%), Gaps = 21/217 (9%)
Query: 225 TVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAI 284
           TVCGDVHGQF+DL+ +F + G   + N YLF GD+VDRG +SVE +  L A K      I
Sbjct: 54  TVCGDVHGQFHDLMELFRIGGKSPDTN-YLFMGDYVDRGYYSVETVTLLVALKVRYRERI 112
Query: 285 YLSRGNHESKSMNKIYGFEGEVRSKLSETFV-ELFAEVFCCLPLAHVLNQKVFVVHGGLF 343
            + RGNHES+ + ++YGF  E   K     V + F ++F  LPL  +++ ++F +HGGL 
Sbjct: 113 TILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLS 172
Query: 344 -SVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF--------- 393
            S+D   L  I+ +DR  E P EG MC+LLWSDP    G G S RG G +F         
Sbjct: 173 PSID--TLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFN 230
Query: 394 -------VVRSHEVKDEGYEIEHDGKLITVFSAPNYC 423
                  V R+H++  EGY   HD  ++T+FSAPNYC
Sbjct: 231 HANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYC 267

>pdb|3FGA|C Chain C, Structural Basis Of Pp2a And Sgo Interaction Length = 309

Iteration: 1
 Score =  172 bits (435), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 93/217 (42%), Positives = 127/217 (58%), Gaps = 21/217 (9%)
Query: 225 TVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAI 284
           TVCGDVHGQF+DL+ +F + G   + N YLF GD+V+RG +SVE +  L A K      I
Sbjct: 53  TVCGDVHGQFHDLMELFRIGGKSPDTN-YLFMGDYVNRGYYSVETVTLLVALKVRYRERI 111
Query: 285 YLSRGNHESKSMNKIYGFEGEVRSKLSETFV-ELFAEVFCCLPLAHVLNQKVFVVHGGLF 343
            + RGNHES+ + ++YGF  E   K     V + F ++F  LPL  +++ ++F +HGGL 
Sbjct: 112 TILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLS 171
Query: 344 -SVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF--------- 393
            S+D   L  I+ +DR  E P EG MC+LLWSDP    G G S RG G +F         
Sbjct: 172 PSID--TLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFN 229
Query: 394 -------VVRSHEVKDEGYEIEHDGKLITVFSAPNYC 423
                  V R+H++  EGY   HD  ++T+FSAPNYC
Sbjct: 230 HANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYC 266

>pdb|2IAE|C Chain C, Crystal Structure Of A Protein Phosphatase 2a (Pp2a) Holoenzyme. Length = 309

Iteration: 1
 Score =  172 bits (435), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 93/217 (42%), Positives = 127/217 (58%), Gaps = 21/217 (9%)
Query: 225 TVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAI 284
           TVCGDVHGQF+DL+ +F + G   + N YLF GD+V+RG +SVE +  L A K      I
Sbjct: 53  TVCGDVHGQFHDLMELFRIGGKSPDTN-YLFMGDYVNRGYYSVETVTLLVALKVRYRERI 111
Query: 285 YLSRGNHESKSMNKIYGFEGEVRSKLSETFV-ELFAEVFCCLPLAHVLNQKVFVVHGGLF 343
            + RGNHES+ + ++YGF  E   K     V + F ++F  LPL  +++ ++F +HGGL 
Sbjct: 112 TILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLS 171
Query: 344 -SVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF--------- 393
            S+D   L  I+ +DR  E P EG MC+LLWSDP    G G S RG G +F         
Sbjct: 172 PSID--TLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFN 229
Query: 394 -------VVRSHEVKDEGYEIEHDGKLITVFSAPNYC 423
                  V R+H++  EGY   HD  ++T+FSAPNYC
Sbjct: 230 HANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYC 266

>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166

Iteration: 1
 Score =  165 bits (417), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 83/161 (51%), Positives = 116/161 (72%), Gaps = 1/161 (0%)
Query: 8   NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSA 67
           + ++ RAEELK  AN+ F+AK Y  AI  YSQAIELN  NA+YY NR+ A+ + E YG A
Sbjct: 7   DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYA 66
Query: 68  IQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127
           + DA++AIE+D +Y KGYYRR A+ +A+GKF+ AL+D++ V K+ P+D DA  K +EC K
Sbjct: 67  LGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 126
Query: 128 AVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARI 168
            VK+  FE AIA  E +R SV DS+D +S+ +E +YSG ++
Sbjct: 127 IVKQKAFERAIAGDEHKR-SVVDSLDIESMTIEDEYSGPKL 166

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 48/126 (38%), Positives = 71/126 (56%), Gaps = 5/126 (3%)
Query: 12  SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDA 71
           + AE LK   NE  + + +  A+  Y +AIELN  NAVY+ NRA A++KL  Y  A+QD 
Sbjct: 10  AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDC 69
Query: 72  SKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131
            +AI IDP Y K Y R G A  ++ K  EA+  +++  +L P++      +K     + +
Sbjct: 70  ERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLK-----IAE 124
Query: 132 LKFEEA 137
           LK  EA
Sbjct: 125 LKLREA 130

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/109 (37%), Positives = 65/109 (59%)
Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           AE  K L N  ++   Y +AI+ Y +A+EL+  NA  + N   A+ K  +Y  AI+   K
Sbjct: 9   AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKV 122
           A+E+DP   K +YRRG AY   G +++A++D+Q+  +L PN+  A Q +
Sbjct: 69  ALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNL 117

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 67/112 (59%)
Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           A+E K   NE F+   Y  A+  Y++A++ + +NA+ Y+NRA   TKL E+  A+ D   
Sbjct: 13  AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT 72
Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125
            I +D ++ KGY R+ A  +AM ++ +A + ++   ++ P++ +A + V+ C
Sbjct: 73  CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 65/109 (59%)
Query: 17  LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE 76
           +K   NE F+   Y QA+  Y++AI+ N ++A  Y+NRA  +TKL E+  A++D  + I+
Sbjct: 19  VKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQ 78
Query: 77  IDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125
           ++P + KGY R+ AA  AM  + +A+  +Q+   L  +  +AA   + C
Sbjct: 79  LEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRC 127

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/109 (33%), Positives = 61/109 (55%)
Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           AE    L N  ++   Y +AI+ Y +A+EL+  NA  + N   A+ K  +Y  AI+   K
Sbjct: 9   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKV 122
           A+E+DP   + +Y  G AY   G + EA++ +Q+  +L PN+ +A Q +
Sbjct: 69  ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL 117

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 1   MPNMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ---NAVYYANRAFA 57
            P         S  E+L+   NE F+   Y  A+  Y+QA+ L++     AV + NRA  
Sbjct: 15  TPEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAAC 74
Query: 58  HTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND 115
           H KLE+Y  A  +ASKAIE D    K  YRR  A   +G+  +A+ D Q+   L P +
Sbjct: 75  HLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN 132

>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 64/116 (55%)
Query: 11  VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQD 70
           + +  ELK   N+A        A+  YS+AI+L+  N V Y+NR+ A+ K  +Y  A +D
Sbjct: 1   MEQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYED 60
Query: 71  ASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126
             K +++ P + KGY R+ AA   + +F+EA + +++  K   N+P   + ++  E
Sbjct: 61  GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/105 (33%), Positives = 59/105 (56%)
Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           AE    L N  ++   Y +AI+ Y +A+EL+ ++A  + N   A+ K  +Y  AI+   K
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
           A+E+DPR  + +Y  G AY   G + EA++ +Q+  +L P   +A
Sbjct: 61  ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 105

>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus Fumigatus Length = 164

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 58/94 (61%)
Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           +++LK+  N A   K+YS+AIDLY+QA+ +   N +Y +NRA A++   ++  A +DA  
Sbjct: 11  SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQ 107
           A  +DP+Y K + R G A   M  +K A + +++
Sbjct: 71  ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEK 104

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/109 (33%), Positives = 59/109 (54%)
Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           AE    L N  ++   Y +AI+ Y +A+EL   NA  + N   A+ K  +Y  AI+   K
Sbjct: 9   AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKV 122
           A+E+ P   + +Y  G AY   G + EA++ +Q+  +L PN+ +A Q +
Sbjct: 69  ALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNL 117

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 58/94 (61%), Gaps = 5/94 (5%)
Query: 38  SQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGK 97
           +QA+ L S     + N A  H KL+ + +AI+  +KA+E+D    KG +RRG A+LA+  
Sbjct: 191 AQALRLAS-----HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVND 245
Query: 98  FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131
           F+ A  DFQ+V +L PN+  A  ++  C++ +++
Sbjct: 246 FELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR 279

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 54/99 (54%)
Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           A+ELK   N  F  +KY +A   Y +AI  N   AVYY NRA  + K+++   A+ D  +
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112
           A+E+D +  K ++  G   L M  + EA+ + Q+   L+
Sbjct: 64  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 102

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 57/94 (60%), Gaps = 5/94 (5%)
Query: 38  SQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGK 97
           +QA+ L S     + N A  H KL+ + +AI+  +KA+E+D    KG  RRG A+LA+  
Sbjct: 191 AQALRLAS-----HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND 245
Query: 98  FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131
           F+ A  DFQ+V +L PN+  A  ++  C++ +++
Sbjct: 246 FELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR 279

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 54/99 (54%)
Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           A+ELK   N  F  +KY +A   Y +AI  N   AVYY NRA  + K+++   A+ D  +
Sbjct: 9   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 68
Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112
           A+E+D +  K ++  G   L M  + EA+ + Q+   L+
Sbjct: 69  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 107

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 15/121 (12%)
Query: 25  FRAKKYSQAIDLYSQAI----------ELNSQNA-----VYYANRAFAHTKLEEYGSAIQ 69
           F+  KY QA+  Y + +          E  S+ +       + N A  + KL EY  A++
Sbjct: 279 FKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVE 338
Query: 70  DASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129
              KA+ +D    KG YRRG A L M +F+ A  DF++V +++P +  A  ++  C+K  
Sbjct: 339 CCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKA 398
Query: 130 K 130
           K
Sbjct: 399 K 399

>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70 Length = 514

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 17  LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE 76
           LK   N+ FR KKY  AI  Y+ A+EL  ++ V+Y+N +  +  + +    ++ ++KA+E
Sbjct: 9   LKDKGNQFFRNKKYDDAIKYYNWALEL-KEDPVFYSNLSACYVSVGDLKKVVEMSTKALE 67
Query: 77  IDPRYPKGYYRRGAAYLAMGKFKEALKDF 105
           + P Y K   RR +A   +GKF +A+ D 
Sbjct: 68  LKPDYSKVLLRRASANEGLGKFADAMFDL 96

>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 50/92 (54%)
Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           A +LK   N  F AK +++AI  Y  AIEL+    V+Y+N +  +    +    I+  +K
Sbjct: 25  AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 84
Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDF 105
           A+EI P + K   RR +A  ++G F +A+ D 
Sbjct: 85  ALEIKPDHSKALLRRASANESLGNFTDAMFDL 116

>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 73  KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND 115
           KA++++P YP  YY RG  Y  +  +K A +DFQ+ + L+P +
Sbjct: 301 KAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN 343

>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 50/92 (54%)
Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           A +LK   N  F AK +++AI  Y  AIEL+    V+Y+N +  +    +    I+  +K
Sbjct: 21  AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 80
Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDF 105
           A+EI P + K   RR +A  ++G F +A+ D 
Sbjct: 81  ALEIKPDHSKALLRRASANESLGNFTDAMFDL 112

>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 73  KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND 115
           KA++++P YP  YY RG  Y  +  +K A +DFQ+ + L+P +
Sbjct: 297 KAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN 339

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 15/121 (12%)
Query: 25  FRAKKYSQAIDLYSQAI----------ELNSQNA-----VYYANRAFAHTKLEEYGSAIQ 69
           F+  KY QA+  Y + +          E  S+ +       + N A  + KL EY  A++
Sbjct: 279 FKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVE 338
Query: 70  DASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129
              KA+ +D    KG YRRG A L M +F+ A  DF++V +++P +  A  ++  C+K  
Sbjct: 339 CCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 398
Query: 130 K 130
           K
Sbjct: 399 K 399

>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = 126

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 61/112 (54%), Gaps = 2/112 (1%)
Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDAS 72
           +AEE +    E F    +  A+  Y++ I+   ++A  Y+NRA A  KL  +  AI D +
Sbjct: 3   KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 62
Query: 73  KAIEIDPRYPKGYYRRGAAYLAMGKFKEALK--DFQQVKKLSPNDPDAAQKV 122
           KAIE DP + + Y R+  A +A+ ++  AL+  D  + K    N+  +A+++
Sbjct: 63  KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 114

>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 73/132 (55%), Gaps = 11/132 (8%)
Query: 12  SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDA 71
           S A++ KA  N+ ++A+++ +AI+ Y++A EL+ ++  Y  NRA A  +  EY +AI   
Sbjct: 3   SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTL 61
Query: 72  SKAI----EIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN-DPDAAQKVK 123
           + A+    E+   Y    K + R G AY  +G  K+ ++ +Q  K L+ +   D   K++
Sbjct: 62  NDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQ--KSLTEHRTADILTKLR 119
Query: 124 ECEKAVKKLKFE 135
             EK +KK + E
Sbjct: 120 NAEKELKKAEAE 131

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 44  NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALK 103
           NS  A Y  N   A+ K  +Y  AI+   KA+E+DP   + +Y  G AY   G + EA++
Sbjct: 7   NSAEAWY--NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 104 DFQQVKKLSPNDPDAAQKV 122
            +Q+  +L PN+ +A Q +
Sbjct: 65  YYQKALELDPNNAEAKQNL 83

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 67/142 (47%), Gaps = 16/142 (11%)
Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIEL--NSQNAVYYA--------------NRAFA 57
           +E+LK + N  F+++ +  AI  Y++ +     S+ A   A              N    
Sbjct: 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 282
Query: 58  HTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117
             K+ ++  A+    +A+EIDP   K  YRR   +  + ++ +AL D ++ ++++P D  
Sbjct: 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 342
Query: 118 AAQKVKECEKAVKKLKFEEAIA 139
              ++ + ++ +K  K +E  A
Sbjct: 343 IQAELLKVKQKIKAQKDKEKAA 364

>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
          AE    L N  ++   Y +AI+ Y +A+EL+ ++A  + N   A+ K  +Y  AI+   K
Sbjct: 3  AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 62
Query: 74 AIEIDPR 80
          A+E+DPR
Sbjct: 63 ALELDPR 69

>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 38/67 (56%)
Query: 47  NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQ 106
           +A  + N   A+ K  +Y  AI+   KA+E+DPR  + +Y  G AY   G + EA++ +Q
Sbjct: 2   SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 61
Query: 107 QVKKLSP 113
           +  +L P
Sbjct: 62  KALELDP 68

>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 54/110 (49%)
Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP 79
           LA+   +  K  +A+  Y +AI ++   A  Y+N      ++++   A+Q  ++AI+I+P
Sbjct: 49  LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 108
Query: 80  RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129
            +   +    + +   G   EA+  ++   KL P+ PDA   +  C + V
Sbjct: 109 AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV 158

>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein Pfl2275c, C-Terminal Tpr-Containing Domain Length = 198

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 19/144 (13%)
Query: 6   TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIE-------------LNSQNAVYYA 52
           T+   V  A ++K   NE F+  + ++AI  Y +A++             L+ +  +  +
Sbjct: 30  TDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89
Query: 53  ---NRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVK 109
              N A  + K ++Y  AI  ASK ++ID    K  Y+ G A +  G  +EA ++  +  
Sbjct: 90  CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149
Query: 110 KLSPNDPDAAQKVKECEKAVKKLK 133
            L+PN+ D     + C   V KLK
Sbjct: 150 SLNPNNLDIRNSYELC---VNKLK 170

>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 127

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 22/124 (17%)
Query: 18  KALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77
           K L N A++ K + +A   Y +AIEL+  N  +Y N+A  + + +++   +Q   KA+E+
Sbjct: 12  KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV 71
Query: 78  DPR-------YPKGYYRRGAAY-------LAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123
                       K   R G A+       LA+  F  +L +F+        DP+  +KVK
Sbjct: 72  GRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR--------DPELVKKVK 123
Query: 124 ECEK 127
           E EK
Sbjct: 124 ELEK 127

>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex With The Hsp90 Peptide Meevd Length = 131

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 11/128 (8%)
Query: 18  KALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77
           K L N+A++ K +  A+  Y +A EL+  N  Y  N+A  + +  +Y    +   KAIE+
Sbjct: 8   KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 78  ------DPRY-PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130
                 D R   K Y R G +Y    K+K+A+  F          PD    +K+C++A K
Sbjct: 68  GRENREDYRQIAKAYARIGNSYFKEEKYKDAI-HFYNKSLAEHRTPDV---LKKCQQAEK 123
Query: 131 KLKFEEAI 138
            LK +E +
Sbjct: 124 ILKEQERL 131

>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The Non-Cognate Hsc70 Peptide Ligand Length = 129

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 8/120 (6%)
Query: 18  KALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77
           K L N+A++ K +  A+  Y +A EL+  N  Y  N+A  + +  +Y    +   KAIE+
Sbjct: 8   KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 78  ------DPRY-PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130
                 D R   K Y R G +Y    K+K+A+  F          PD  +K ++ EK +K
Sbjct: 68  GRENREDYRQIAKAYARIGNSYFKEEKYKDAI-HFYNKSLAEHRTPDVLKKCQQAEKILK 126

>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd Length = 111

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 34/65 (52%)
Query: 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQD 70
          +S+ E+ K   N  F+   Y +A+  Y Q I    QN V Y+N+A A  KL EY  AIQ 
Sbjct: 1  MSQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQM 60
Query: 71 ASKAI 75
            + +
Sbjct: 61 CQQGL 65

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	429
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	0.0
3h63_A	315	Serine/threonine-protein phosphatase 5; metalloenz	1e-159
3icf_A	335	PPT, serine/threonine-protein phosphatase T; IRO m	1e-150
3ll8_A	357	Serine/threonine-protein phosphatase 2B catalytic	1e-96
2ie4_C	309	PP2A-alpha;, serine/threonine-protein phosphatase	2e-93
1aui_A	521	Calcineurin, serine/threonine phosphatase 2B; hydr	7e-92
3e7a_A	299	PP-1A, serine/threonine-protein phosphatase PP1-al	8e-92
1fjm_A	330	Protein serine/threonine phosphatase-1 (alpha ISO	3e-91
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	1e-70
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	4e-57
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	7e-56
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	2e-55
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-55
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	5e-17
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	3e-55
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	4e-55
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	4e-53
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	5e-53
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	8e-52
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-47
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	8e-45
2l6j_A	111	TPR repeat-containing protein associated with HSP;	2e-41
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	6e-39
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	1e-38
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-38
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-33
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-30
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-19
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-18
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-16
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-37
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-32
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-29
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-19
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-19
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-08
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-36
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	8e-31
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-25
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-23
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-17
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-15
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	1e-35
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-35
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-28
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-26
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-26
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-25
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-21
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-21
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-30
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-25
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-22
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-21
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-20
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-19
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-06
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-29
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-16
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	7e-27
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-27
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-24
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-23
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-23
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-22
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-22
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-15
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-14
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-26
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-23
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-21
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-15
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-07
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-25
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-13
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-25
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-25
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-23
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-22
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-15
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-11
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-25
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-15
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	6e-25
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-24
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-24
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-24
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-24
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-24
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-23
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-23
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-21
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-17
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-12
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	8e-24
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-23
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-19
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	5e-13
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	6e-08
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-23
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-20
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-17
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	9e-17
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-23
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-22
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-20
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-19
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-19
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-19
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-19
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-18
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-18
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-18
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-17
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-15
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-13
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-13
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-22
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-20
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-19
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-18
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-18
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-16
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-22
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-21
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-17
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-22
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-21
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	8e-12
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-22
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-20
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-19
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	9e-14
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-10
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	4e-22
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-17
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-21
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-21
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	4e-20
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	6e-14
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-21
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-18
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-17
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-11
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-20
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-19
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-19
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-16
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	9e-16
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	9e-16
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-12
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-20
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-18
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	5e-17
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-16
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	8e-13
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	5e-10
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-20
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	7e-14
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	8e-14
2z72_A	342	Protein-tyrosine-phosphatase; cold-active enzyme,	3e-20
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-19
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	6e-19
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	7e-17
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-16
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-14
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	5e-18
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-15
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	3e-15
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	6e-13
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	5e-18
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-14
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-08
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	6e-18
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-17
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-12
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-08
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	7e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-17
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-17
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	8e-16
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-15
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-14
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	6e-17
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	8e-10
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	9e-17
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	6e-12
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-16
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-15
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	5e-14
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	5e-12
3k9i_A	117	BH0479 protein; putative protein binding protein,	9e-16
3k9i_A	117	BH0479 protein; putative protein binding protein,	5e-08
3k9i_A	117	BH0479 protein; putative protein binding protein,	7e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-15
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-14
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-13
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-10
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-09
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-09
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-06
1g5b_A	221	Serine/threonine protein phosphatase; bacteriophag	2e-15
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	4e-15
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-12
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	5e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-14
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	3e-11
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-05
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	2e-14
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	4e-13
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	1e-12
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	1e-08
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	3e-06
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	5e-13
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	9e-13
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	9e-13
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	2e-11
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	7e-12
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	2e-10
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	1e-07
2qjc_A	262	Diadenosine tetraphosphatase, putative; putative d	1e-10
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-09
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-06
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	4e-05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-04
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	6e-09
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	3e-06
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	3e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	4e-04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	3e-08
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	6e-08
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	3e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	7e-08
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-07
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	4e-06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-04
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	1e-07
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-07
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	3e-06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	3e-06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	5e-06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-04
2dfj_A	280	Diadenosinetetraphosphatase; helices and strands m	3e-07
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	4e-07
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	4e-06
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	1e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	1e-04
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	9e-04
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	6e-07
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	3e-04
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	7e-07
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	3e-06
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	2e-05
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	8e-05
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	5e-05
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	2e-04
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	6e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	5e-04
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	8e-05
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	9e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	1e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	8e-04
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	3e-04

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score =  659 bits (1701), Expect = 0.0
 Identities = 240/433 (55%), Positives = 314/433 (72%), Gaps = 17/433 (3%)

Query: 9   SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAI 68
            ++ RAEELK  AN+ F+AK Y  AI  YSQAIELN  NA+YY NR+ A+ + E YG A+
Sbjct: 1   GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYAL 60

Query: 69  QDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA 128
            DA++AIE+D +Y KGYYRR A+ +A+GKF+ AL+D++ V K+ P+D DA  K +EC K 
Sbjct: 61  GDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 120

Query: 129 VKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQ 188
           VK+  FE AIA  E +R SV DS+D +S+ +E +YSG ++E   +T+ F+K++M  +K+Q
Sbjct: 121 VKQKAFERAIAGDEHKR-SVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQ 179

Query: 189 KCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPS 248
           K LH++ A+QI++Q +E+L  L +LV+  + + +  TVCGD HGQFYDLLNIFELNGLPS
Sbjct: 180 KKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQFYDLLNIFELNGLPS 239

Query: 249 EENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRS 308
           E NPY+FNGDFVDRGSFSVEVILTLF FK + P   +L RGNHE+ +MN+IYGFEGEV++
Sbjct: 240 ETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVKA 299

Query: 309 KLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLM 368
           K +    ELF+EVF  LPLA  +N KV ++HGGLFS DGV L DI+ I+R  +PP+ G M
Sbjct: 300 KYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSEDGVTLDDIRKIERNRQPPDSGPM 359

Query: 369 CELLWSDPQPLPGRGPSKRGVGLSF----------------VVRSHEVKDEGYEIEHDGK 412
           C+LLWSDPQP  GR  SKRGV   F                ++RSHEVK EGYE+ H G+
Sbjct: 360 CDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFLEENNLDYIIRSHEVKAEGYEVAHGGR 419

Query: 413 LITVFSAPNYCDQ 425
            +TVFSAPNYCDQ
Sbjct: 420 CVTVFSAPNYCDQ 432

>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors, drug design, cytoplasm, hydrolase, iron, manganese, metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens} PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A* 3h68_A* 3h69_A* 1s95_A Length = 315

 Score =  450 bits (1161), Expect = e-159
 Identities = 160/279 (57%), Positives = 204/279 (73%), Gaps = 16/279 (5%)

Query: 163 YSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGK 222
           YSG ++E   +T+ F+K++M  +K+QK LH++ A+QI++Q +E+L  L +LV+  + + +
Sbjct: 1   YSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETE 60

Query: 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPS 282
             TVCGD HGQFYDLLNIFELNGLPSE NPY+FNGDFVDRGSFSVEVILTLF FK + P 
Sbjct: 61  KITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPD 120

Query: 283 AIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGL 342
             +L RGNHE+ +MN+IYGFEGEV++K +    ELF+EVF  LPLA  +N KV ++HGGL
Sbjct: 121 HFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGL 180

Query: 343 FSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF--------- 393
           FS DGV L DI+ I+R  +PP+ G MC+LLWSDPQP  GR  SKRGV   F         
Sbjct: 181 FSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFL 240

Query: 394 -------VVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQ 425
                  ++RSHEVK EGYE+ H G+ +TVFSAPNYCDQ
Sbjct: 241 EENNLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQ 279

>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein, structural genomics, PSI-2, protein structu initiative; 2.30A {Saccharomyces cerevisiae} Length = 335

 Score =  427 bits (1100), Expect = e-150
 Identities = 126/285 (44%), Positives = 173/285 (60%), Gaps = 21/285 (7%)

Query: 160 EPQYSGARIEGDVITLDFVKKMMDD-FKNQKCLHKRYAFQIVLQTREMLRALPSLVDID- 217
           +  + GA+I+   ++ +F+ KM++D F   K L K+Y   I+     + R  PS+V+++ 
Sbjct: 1   KNAFKGAKIKN--MSQEFISKMVNDLFLKGKYLPKKYVAAIISHADTLFRQEPSMVELEN 58

Query: 218 -IPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAF 276
                   +VCGD HGQFYD+LN+F   G    ++ YLFNGDFVDRGS+S EV L  +  
Sbjct: 59  NSTPDVKISVCGDTHGQFYDVLNLFRKFGKVGPKHTYLFNGDFVDRGSWSCEVALLFYCL 118

Query: 277 KCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVF 336
           K + P+  +L+RGNHES +MNKIYGFE E + K S+    +FA+ F  LPLA ++N    
Sbjct: 119 KILHPNNFFLNRGNHESDNMNKIYGFEDECKYKYSQRIFNMFAQSFESLPLATLINNDYL 178

Query: 337 VVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF--- 393
           V+HGGL S     LSD K IDRF +PP +G   ELLW+DPQ   G GPS+RG+G +F   
Sbjct: 179 VMHGGLPSDPSATLSDFKNIDRFAQPPRDGAFMELLWADPQEANGMGPSQRGLGHAFGPD 238

Query: 394 -------------VVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQ 425
                        + RSHE++  G + E  GKL+TVFSAPNYCD 
Sbjct: 239 ITDRFLRNNKLRKIFRSHELRMGGVQFEQKGKLMTVFSAPNYCDS 283

>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A* 1tco_A* 1mf8_A* 2jog_A Length = 357

 Score =  293 bits (751), Expect = 1e-96
 Identities = 105/277 (37%), Positives = 151/277 (54%), Gaps = 36/277 (12%)

Query: 178 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDL 237
           V  +      +  L +  A +I+ +   +LR   +L+DID P     TVCGD+HGQF+DL
Sbjct: 30  VDILKAHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAP----VTVCGDIHGQFFDL 85

Query: 238 LNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMN 297
           + +FE+ G P+    YLF GD+VDRG FS+E +L L+A K + P  ++L RGNHE + + 
Sbjct: 86  MKLFEVGGSPANTR-YLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLT 144

Query: 298 KIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTID 357
           + + F+ E + K SE   +   + F CLPLA ++NQ+   VHGGL S +   L DI+ +D
Sbjct: 145 EYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLCVHGGL-SPEINTLDDIRKLD 203

Query: 358 RFCEPPEEGLMCELLWSDPQPLPG--------RGPSKRGVG----------------LSF 393
           RF EPP  G MC++LWSDP    G           + RG                  L  
Sbjct: 204 RFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLS 263

Query: 394 VVRSHEVKDEGYEIEHDGK------LITVFSAPNYCD 424
           ++R+HE +D GY +    +      LIT+FSAPNY D
Sbjct: 264 ILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLD 300

>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform; protein-protein complex, heat repeat, signaling protein; HET: OKA; 2.60A {Homo sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C* 3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C* 2nyl_C* Length = 309

 Score =  282 bits (725), Expect = 2e-93
 Identities = 100/275 (36%), Positives = 149/275 (54%), Gaps = 24/275 (8%)

Query: 168 IEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVC 227
           ++  V T + + + ++     K L +     +  + +E+L    ++ ++  P     TVC
Sbjct: 1   MDEKVFTKE-LDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCP----VTVC 55

Query: 228 GDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLS 287
           GDVHGQF+DL+ +F + G   + N YLF GD+VDRG +SVE +  L A K      I + 
Sbjct: 56  GDVHGQFHDLMELFRIGGKSPDTN-YLFMGDYVDRGYYSVETVTLLVALKVRYRERITIL 114

Query: 288 RGNHESKSMNKIYGFEGEVRSKLSETFV-ELFAEVFCCLPLAHVLNQKVFVVHGGLFSVD 346
           RGNHES+ + ++YGF  E   K     V + F ++F  LPL  +++ ++F +HGGL S  
Sbjct: 115 RGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGL-SPS 173

Query: 347 GVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVG---------------- 390
              L  I+ +DR  E P EG MC+LLWSDP    G G S RG G                
Sbjct: 174 IDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANG 233

Query: 391 LSFVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQ 425
           L+ V R+H++  EGY   HD  ++T+FSAPNYC +
Sbjct: 234 LTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYR 268

>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase, immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3 Length = 521

 Score =  285 bits (732), Expect = 7e-92
 Identities = 105/277 (37%), Positives = 151/277 (54%), Gaps = 36/277 (12%)

Query: 178 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDL 237
           V  +      +  L +  A +I+ +   +LR   +L+DID P     TVCGD+HGQF+DL
Sbjct: 43  VDILKAHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAP----VTVCGDIHGQFFDL 98

Query: 238 LNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMN 297
           + +FE+ G P+    YLF GD+VDRG FS+E +L L+A K + P  ++L RGNHE + + 
Sbjct: 99  MKLFEVGGSPANTR-YLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLT 157

Query: 298 KIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTID 357
           + + F+ E + K SE   +   + F CLPLA ++NQ+   VHGGL S +   L DI+ +D
Sbjct: 158 EYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLCVHGGL-SPEINTLDDIRKLD 216

Query: 358 RFCEPPEEGLMCELLWSDPQPLPG--------RGPSKRGVG----------------LSF 393
           RF EPP  G MC++LWSDP    G           + RG                  L  
Sbjct: 217 RFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLS 276

Query: 394 VVRSHEVKDEGYEIEHDGK------LITVFSAPNYCD 424
           ++R+HE +D GY +    +      LIT+FSAPNY D
Sbjct: 277 ILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLD 313

>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit; carbohydrate metabolism, cell cycle, cell division; HET: 1ZN; 1.63A {Homo sapiens} PDB: 3e7b_A* 3egg_A* 3egh_A* 3hvq_A 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A 2o8a_A 1u32_A* 1s70_A* Length = 299

 Score =  278 bits (714), Expect = 8e-92
 Identities = 99/245 (40%), Positives = 147/245 (60%), Gaps = 23/245 (9%)

Query: 198 QIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG 257
            + L++RE+  + P L++++ P      +CGD+HGQ+YDLL +FE  G P E N YLF G
Sbjct: 36  GLCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPESN-YLFLG 90

Query: 258 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVEL 317
           D+VDRG  S+E I  L A+K   P   +L RGNHE  S+N+IYGF  E + + +    + 
Sbjct: 91  DYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKT 150

Query: 318 FAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQ 377
           F + F CLP+A ++++K+F  HGGL S D   +  I+ I R  + P++GL+C+LLWSDP 
Sbjct: 151 FTDCFNCLPIAAIVDEKIFCCHGGL-SPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPD 209

Query: 378 P-LPGRGPSKRGVG----------------LSFVVRSHEVKDEGYEIEHDGKLITVFSAP 420
             + G G + RGV                 L  + R+H+V ++GYE     +L+T+FSAP
Sbjct: 210 KDVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAP 269

Query: 421 NYCDQ 425
           NYC +
Sbjct: 270 NYCGE 274

>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase, toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN; 2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3 Length = 330

 Score =  278 bits (713), Expect = 3e-91
 Identities = 99/245 (40%), Positives = 147/245 (60%), Gaps = 23/245 (9%)

Query: 198 QIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG 257
            + L++RE+  + P L++++ P      +CGD+HGQ+YDLL +FE  G P E N YLF G
Sbjct: 37  GLCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPESN-YLFLG 91

Query: 258 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVEL 317
           D+VDRG  S+E I  L A+K   P   +L RGNHE  S+N+IYGF  E + + +    + 
Sbjct: 92  DYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKT 151

Query: 318 FAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQ 377
           F + F CLP+A ++++K+F  HGGL S D   +  I+ I R  + P++GL+C+LLWSDP 
Sbjct: 152 FTDCFNCLPIAAIVDEKIFCCHGGL-SPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPD 210

Query: 378 P-LPGRGPSKRGVG----------------LSFVVRSHEVKDEGYEIEHDGKLITVFSAP 420
             + G G + RGV                 L  + R+H+V ++GYE     +L+T+FSAP
Sbjct: 211 KDVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAP 270

Query: 421 NYCDQ 425
           NYC +
Sbjct: 271 NYCGE 275

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score =  219 bits (559), Expect = 1e-70
 Identities = 82/166 (49%), Positives = 116/166 (69%), Gaps = 1/166 (0%)

Query: 3   NMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE 62
           +    + ++ RAEELK  AN+ F+AK Y  AI  YSQAIELN  NA+YY NR+ A+ + E
Sbjct: 2   DEPPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE 61

Query: 63  EYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKV 122
            YG A+ DA++AIE+D +Y KGYYRR A+ +A+GKF+ AL+D++ V K+ P+D DA  K 
Sbjct: 62  CYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKY 121

Query: 123 KECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARI 168
           +EC K VK+  FE AIA  E  + SV DS+D +S+ +E +YSG ++
Sbjct: 122 QECNKIVKQKAFERAIAGDE-HKRSVVDSLDIESMTIEDEYSGPKL 166

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score =  188 bits (479), Expect = 4e-57
 Identities = 52/248 (20%), Positives = 91/248 (36%), Gaps = 13/248 (5%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           A+ELK   N  F  +KY +A   Y +AI  N   AVYY NRA  + K+++   A+ D  +
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP-NDPDAAQKVKECEKAVKKL 132
           A+E+D +  K ++  G   L M  + EA+ + Q+   L+     +    +    +  KK 
Sbjct: 64  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 123

Query: 133 KFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLH 192
           ++       E  R      +      +        +E      +  +        Q C+ 
Sbjct: 124 RWNS----IEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIE 179

Query: 193 KRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDV--------HGQFYDLLNIFELN 244
            ++   +        +        DIPD     +  ++         G  YD  +I E  
Sbjct: 180 AKHDKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHL 239

Query: 245 GLPSEENP 252
                 NP
Sbjct: 240 QRVGHFNP 247

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score =  179 bits (457), Expect = 7e-56
 Identities = 36/117 (30%), Positives = 64/117 (54%)

Query: 11  VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQD 70
           + +  ELK   N+A        A+  YS+AI+L+  N V Y+NR+ A+ K  +Y  A +D
Sbjct: 1   MEQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYED 60

Query: 71  ASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127
             K +++ P + KGY R+ AA   + +F+EA + +++  K   N+P   + ++  E 
Sbjct: 61  GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score =  178 bits (455), Expect = 2e-55
 Identities = 40/116 (34%), Positives = 67/116 (57%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDAS 72
            A  +K   NE F+   Y QA+  Y++AI+ N ++A  Y+NRA  +TKL E+  A++D  
Sbjct: 15  LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCE 74

Query: 73  KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA 128
           + I+++P + KGY R+ AA  AM  + +A+  +Q+   L  +  +AA   + C  A
Sbjct: 75  ECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score =  178 bits (455), Expect = 2e-55
 Identities = 45/118 (38%), Positives = 68/118 (57%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           AE LK   NE  + + +  A+  Y +AIELN  NAVY+ NRA A++KL  Y  A+QD  +
Sbjct: 12  AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCER 71

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131
           AI IDP Y K Y R G A  ++ K  EA+  +++  +L P++      +K  E  +++
Sbjct: 72  AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 76.1 bits (188), Expect = 5e-17
 Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 16/127 (12%)

Query: 42  ELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEA 101
           E +S  A           K+E + +A+    KAIE++P     +  R AAY  +G +  A
Sbjct: 6   EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGA 65

Query: 102 LKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQS-IEVE 160
           ++D ++   + P    A  ++     ++   K  EA+A              Y+  +E++
Sbjct: 66  VQDCERAICIDPAYSKAYGRMGLALSSLN--KHVEAVA-------------YYKKALELD 110

Query: 161 PQYSGAR 167
           P     +
Sbjct: 111 PDNETYK 117

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score =  178 bits (453), Expect = 3e-55
 Identities = 36/115 (31%), Positives = 68/115 (59%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDAS 72
            A+E K   NE F+   Y  A+  Y++A++ + +NA+ Y+NRA   TKL E+  A+ D  
Sbjct: 12  LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCD 71

Query: 73  KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127
             I +D ++ KGY R+ A  +AM ++ +A + ++   ++ P++ +A + V+ C +
Sbjct: 72  TCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCLR 126

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score =  179 bits (455), Expect = 4e-55
 Identities = 38/145 (26%), Positives = 74/145 (51%), Gaps = 2/145 (1%)

Query: 8   NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSA 67
            +    +++LK+  N A   K+YS+AIDLY+QA+ +   N +Y +NRA A++   ++  A
Sbjct: 5   MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKA 64

Query: 68  IQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK--VKEC 125
            +DA  A  +DP+Y K + R G A   M  +K A + +++  +   N    A K  ++  
Sbjct: 65  AEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124

Query: 126 EKAVKKLKFEEAIAVPESERHSVAD 150
           ++ +++          + +  + A 
Sbjct: 125 KRKIEEANRGAEPPADDVDDAAGAS 149

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score =  172 bits (439), Expect = 4e-53
 Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 1/123 (0%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDAS 72
           +AEE +    E F    +  A+  Y++ I+   ++A  Y+NRA A  KL  +  AI D +
Sbjct: 3   KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 62

Query: 73  KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132
           KAIE DP + + Y R+  A +A+ ++  AL+     +       + +   +E ++   K 
Sbjct: 63  KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA-REIDQLYYKA 121

Query: 133 KFE 135
             +
Sbjct: 122 SQQ 124

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  173 bits (440), Expect = 5e-53
 Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 3/131 (2%)

Query: 2   PNMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELN---SQNAVYYANRAFAH 58
           P         S  E+L+   NE F+   Y  A+  Y+QA+ L+      AV + NRA  H
Sbjct: 16  PEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACH 75

Query: 59  TKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
            KLE+Y  A  +ASKAIE D    K  YRR  A   +G+  +A+ D Q+   L P +   
Sbjct: 76  LKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVF 135

Query: 119 AQKVKECEKAV 129
            + ++      
Sbjct: 136 QEALRNISGPS 146

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score =  169 bits (431), Expect = 8e-52
 Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 5/134 (3%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDAS 72
            A+ELK   N  F  +KY +A   Y +AI  N   AVYY NRA  + K+++   A+ D  
Sbjct: 8   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 67

Query: 73  KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA-AQKVKECEKAVKK 131
           +A+E+D +  K ++  G   L M  + EA+ + Q+   L+          +    +  KK
Sbjct: 68  RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127

Query: 132 LKFEEAIAVPESER 145
            ++       E  R
Sbjct: 128 KRWNS----IEERR 137

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score =  157 bits (400), Expect = 2e-47
 Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 8/128 (6%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDAS 72
           +A + K L N+A++ K +  A+  Y +A EL+  N  Y  N+A  + +  +Y    +   
Sbjct: 3   QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62

Query: 73  KAIEIDP-------RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125
           KAIE+         +  K Y R G +Y    K+K+A+  + +        PD  +K ++ 
Sbjct: 63  KAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQA 121

Query: 126 EKAVKKLK 133
           EK +K+ +
Sbjct: 122 EKILKEQE 129

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score =  150 bits (382), Expect = 8e-45
 Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 8/127 (6%)

Query: 8   NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSA 67
           N+    A   K L N A++ K + +A   Y +AIEL+  N  +Y N+A  + + +++   
Sbjct: 2   NAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAEC 61

Query: 68  IQDASKAIEIDP-------RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120
           +Q   KA+E+            K   R G A+        A++ F +      + P+  +
Sbjct: 62  VQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVK 120

Query: 121 KVKECEK 127
           KVKE EK
Sbjct: 121 KVKELEK 127

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score =  141 bits (358), Expect = 2e-41
 Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 1/111 (0%)

Query: 11  VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQD 70
           +S+ E+ K   N  F+   Y +A+  Y Q I    QN V Y+N+A A  KL EY  AIQ 
Sbjct: 1   MSQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQM 60

Query: 71  ASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121
             + +           R    Y  +   + A+   Q         P+   +
Sbjct: 61  CQQGLRYTSTAEHVAIRSKLQY-RLELAQGAVGSVQIPVVEVDELPEGYDR 110

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  137 bits (346), Expect = 6e-39
 Identities = 32/150 (21%), Positives = 59/150 (39%), Gaps = 18/150 (12%)

Query: 5   ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAI------------------ELNSQ 46
             E+  +   E L+   NE F  K Y +AID Y  A+                  EL+ +
Sbjct: 2   NAEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRK 61

Query: 47  NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQ 106
           N   YAN +  +  + +   A + +S+ ++ +    K  +RR  A +A  K  EA +D +
Sbjct: 62  NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLK 121

Query: 107 QVKKLSPNDPDAAQKVKECEKAVKKLKFEE 136
            + +  P       +  +     +  K  +
Sbjct: 122 LLLRNHPAAASVVAREMKIVTERRAEKKAD 151

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  137 bits (347), Expect = 1e-38
 Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 16/143 (11%)

Query: 11  VSRAEELKALANEAFRAKKYSQAIDLYSQAI----------------ELNSQNAVYYANR 54
           V  A ++K   NE F+  + ++AI  Y +A+                +  +       N 
Sbjct: 35  VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 94

Query: 55  AFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114
           A  + K ++Y  AI  ASK ++ID    K  Y+ G A +  G  +EA ++  +   L+PN
Sbjct: 95  ATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154

Query: 115 DPDAAQKVKECEKAVKKLKFEEA 137
           + D     + C   +K+ + ++ 
Sbjct: 155 NLDIRNSYELCVNKLKEARKKDK 177

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  141 bits (358), Expect = 2e-38
 Identities = 33/158 (20%), Positives = 70/158 (44%), Gaps = 5/158 (3%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
            E+   L  +   A + + A+  +  A++ +  N + Y  RA     + +  +A+ D +K
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
            I +   +     +RG   L  GK  EA  DF++V K +P++ +  +   +  KA +  +
Sbjct: 63  VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQR 122

Query: 134 -FEEAIAVPESERHSVADSIDY--QSIEVEPQYSGARI 168
              +A+   +   ++ A  I +  + +EV    +  R 
Sbjct: 123 LRSQALDAFDGADYTAA--ITFLDKILEVCVWDAELRE 158

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  128 bits (323), Expect = 1e-33
 Identities = 26/127 (20%), Positives = 57/127 (44%), Gaps = 4/127 (3%)

Query: 11  VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVY----YANRAFAHTKLEEYGS 66
           V +  +L   A E  R  +Y+ A   Y   ++     A Y            +K E+   
Sbjct: 231 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVE 290

Query: 67  AIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126
           AI+  S+ ++++P        R  AYL    + EA++D++  ++ + ND    + +++ +
Sbjct: 291 AIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350

Query: 127 KAVKKLK 133
           + +K+ +
Sbjct: 351 RLLKQSQ 357

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  117 bits (296), Expect = 8e-30
 Identities = 28/167 (16%), Positives = 63/167 (37%), Gaps = 24/167 (14%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
            + L++ A +AF    Y+ AI    + +E+   +A     RA    K  E   AI D   
Sbjct: 120 MQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKA 179

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA----------AQKVK 123
           A ++     + +Y+    Y  +G  + +L + ++  KL  +               + ++
Sbjct: 180 ASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIE 239

Query: 124 ECEKAVKKLKFEEAIAVPESERHSVADSIDY-QSIEVEPQYSGARIE 169
             E+ ++  ++ +A +              Y   ++ EP  +   + 
Sbjct: 240 SAEELIRDGRYTDATS-------------KYESVMKTEPSVAEYTVR 273

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 88.1 bits (219), Expect = 2e-19
 Identities = 22/192 (11%), Positives = 60/192 (31%), Gaps = 35/192 (18%)

Query: 18  KALANEA---FRAKKYSQAIDLYSQAIELNSQNAVYYANR---------------AFAHT 59
            A         +  K  +A D + + ++ N                         A    
Sbjct: 72  AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAF 131

Query: 60  KLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119
              +Y +AI    K +E+     +    R   ++  G+ ++A+ D +   KL  ++ +A 
Sbjct: 132 DGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAF 191

Query: 120 QKVKECEKAVKKLKFEEAIAVPESERHSVADSIDY-QSIEVEPQYSGARIE-GDVITLDF 177
            K+      +     E +++             +  + ++++  +         V  L+ 
Sbjct: 192 YKISTLYYQLG--DHELSLS-------------EVRECLKLDQDHKRCFAHYKQVKKLNK 236

Query: 178 VKKMMDDFKNQK 189
           + +  ++     
Sbjct: 237 LIESAEELIRDG 248

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 84.2 bits (209), Expect = 3e-18
 Identities = 26/126 (20%), Positives = 41/126 (32%), Gaps = 26/126 (20%)

Query: 47  NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQ 106
           +   +           +   A+     A++ DP     YYRR   +LAMGK K AL D  
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61

Query: 107 QVKKLSPNDPDA----AQKVKECEKAVKKL-KFEEAIAVPESERHSVADSIDY-QSIEVE 160
           +V  L  +   A              + K  K +EA               D+ + ++  
Sbjct: 62  KVIALKMDFTAARLQRG-------HLLLKQGKLDEAED-------------DFKKVLKSN 101

Query: 161 PQYSGA 166
           P     
Sbjct: 102 PSEQEE 107

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 79.6 bits (197), Expect = 2e-16
 Identities = 17/73 (23%), Positives = 32/73 (43%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
           +K  +AI + S+ +++   N     +RA A+   E Y  AIQD   A E +    +    
Sbjct: 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREG 345

Query: 88  RGAAYLAMGKFKE 100
              A   + + ++
Sbjct: 346 LEKAQRLLKQSQK 358

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  140 bits (355), Expect = 2e-37
 Identities = 33/158 (20%), Positives = 71/158 (44%), Gaps = 5/158 (3%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
            E+   L  +   A + + A+  +  A++ +  N + Y  RA     + +  +A+ D +K
Sbjct: 26  VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 85

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
            I++   +     +RG   L  GK  EA  DF++V K +P++ +  +   +  K+ +  +
Sbjct: 86  VIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR 145

Query: 134 F-EEAIAVPESERHSVADSIDY--QSIEVEPQYSGARI 168
              +A+    S  ++ A  I +  + +EV    +  R 
Sbjct: 146 LRSQALNAFGSGDYTAA--IAFLDKILEVCVWDAELRE 181

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  125 bits (315), Expect = 7e-32
 Identities = 26/127 (20%), Positives = 57/127 (44%), Gaps = 4/127 (3%)

Query: 11  VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVY----YANRAFAHTKLEEYGS 66
           V +  +L   A E  R  +Y+ A   Y   ++     A Y            +K E+   
Sbjct: 254 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVE 313

Query: 67  AIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126
           AI+  S+ ++++P        R  AYL    + EA++D++  ++ + ND    + +++ +
Sbjct: 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQ 373

Query: 127 KAVKKLK 133
           + +K+ +
Sbjct: 374 RLLKQSQ 380

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  118 bits (297), Expect = 2e-29
 Identities = 28/178 (15%), Positives = 66/178 (37%), Gaps = 24/178 (13%)

Query: 3   NMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE 62
             +++       + L++ A  AF +  Y+ AI    + +E+   +A     RA    K  
Sbjct: 132 EAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEG 191

Query: 63  EYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA---- 118
           E   AI D   A ++     + +Y+    Y  +G  + +L + ++  KL  +        
Sbjct: 192 EPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY 251

Query: 119 ------AQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDY-QSIEVEPQYSGARIE 169
                  + ++  E+ ++  ++ +A +              Y   ++ EP  +   + 
Sbjct: 252 KQVKKLNKLIESAEELIRDGRYTDATS-------------KYESVMKTEPSIAEYTVR 296

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 89.7 bits (223), Expect = 1e-19
 Identities = 30/145 (20%), Positives = 51/145 (35%), Gaps = 18/145 (12%)

Query: 12  SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDA 71
            R++E         + +K  +AI + S+ +++   N     +RA A+   E Y  AIQD 
Sbjct: 295 VRSKERICHCF--SKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDY 352

Query: 72  SKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND---------------P 116
             A E +    +       A   + + ++         K +                  P
Sbjct: 353 ETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHP 412

Query: 117 DAAQKVKECEKAVKKLK-FEEAIAV 140
           D  Q  +E +KA KK      A  V
Sbjct: 413 DNFQNEEEKKKAEKKFIDIAAAKEV 437

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 87.8 bits (218), Expect = 5e-19
 Identities = 19/135 (14%), Positives = 48/135 (35%), Gaps = 17/135 (12%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVY---------------YANRAFAHTKLEEY 64
             +   +  K  +A D + + ++ N                       ++A       +Y
Sbjct: 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY 159

Query: 65  GSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE 124
            +AI    K +E+     +    R   ++  G+ ++A+ D +   KL  ++ +A  K+  
Sbjct: 160 TAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKIST 219

Query: 125 CEKAVKKLKFEEAIA 139
               +     E +++
Sbjct: 220 LYYQLG--DHELSLS 232

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 85.5 bits (212), Expect = 3e-18
 Identities = 28/139 (20%), Positives = 50/139 (35%), Gaps = 17/139 (12%)

Query: 30  YSQAIDLYSQ-AIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88
           +S  +DL ++     +  +   +           +   A+     A++ DP     YYRR
Sbjct: 7   HSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRR 66

Query: 89  GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSV 148
              +LAMGK K AL D  +V +L  +   A  +           K +EA           
Sbjct: 67  ATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQG--KLDEAED--------- 115

Query: 149 ADSIDY-QSIEVEPQYSGA 166
               D+ + ++  P  +  
Sbjct: 116 ----DFKKVLKSNPSENEE 130

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 19/123 (15%), Positives = 40/123 (32%), Gaps = 33/123 (26%)

Query: 50  YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVK 109
           ++ +          Y  ++ D  K           +   G   LA G+  +AL  F    
Sbjct: 5   HHHSSGVDLGTENLYFQSMADVEK-----------HLELGKKLLAAGQLADALSQFHAAV 53

Query: 110 KLSPNDPDAAQKVKECEKAV---KKLKFEEAIAVPESERHSVADSIDY-QSIEVEPQYSG 165
              P++  A  +     +A       K + A+              D  + I+++  ++ 
Sbjct: 54  DGDPDNYIAYYR-----RATVFLAMGKSKAALP-------------DLTKVIQLKMDFTA 95

Query: 166 ARI 168
           AR+
Sbjct: 96  ARL 98

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  132 bits (334), Expect = 5e-36
 Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 5/124 (4%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           AEE +    E F    +  A+  Y++ I+   ++A  Y+NRA A  KL  +  AI D +K
Sbjct: 139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 198

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
           AIE DP + + Y R+  A +A+ ++  AL+     +       + +       + + +L 
Sbjct: 199 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGS-----SAREIDQLY 253

Query: 134 FEEA 137
           ++ +
Sbjct: 254 YKAS 257

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  118 bits (297), Expect = 8e-31
 Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 9/131 (6%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           A++ KA  N+ ++A+++ +AI+ Y++A EL+  +  Y  NRA A  +  EY +AI   + 
Sbjct: 5   ADKEKAEGNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAISTLND 63

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEK 127
           A+E        Y     ++  +G     L D ++  +            D   K++  EK
Sbjct: 64  AVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEK 123

Query: 128 AVKKLKFEEAI 138
            +K  K E   
Sbjct: 124 ELK--KAEAEA 132

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  103 bits (258), Expect = 2e-25
 Identities = 20/146 (13%), Positives = 47/146 (32%), Gaps = 28/146 (19%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
           +   + +        +N + A         +    ++ +A++  ++ I+  P   +GY  
Sbjct: 119 RNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSN 178

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA------AQKVKECEKAVKKLKFEEAIAVP 141
           R AA   +  F EA+ D  +  +  PN   A      AQ   +        ++  A+   
Sbjct: 179 RAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK--------EYASALE-- 228

Query: 142 ESERHSVADSIDY-QSIEVEPQYSGA 166
                          +   + + +  
Sbjct: 229 -----------TLDAARTKDAEVNNG 243

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 98.0 bits (245), Expect = 1e-23
 Identities = 28/148 (18%), Positives = 49/148 (33%), Gaps = 29/148 (19%)

Query: 26  RAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85
           R       +    + IE   ++   +   A   TKL      ++ A     ++P   +  
Sbjct: 84  RIGNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAYVNPEKAEEA 142

Query: 86  YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA------AQKVKECEKAVKKLKFEEAIA 139
              G  Y     +  A+K + ++ K +P D         A          K + F EAIA
Sbjct: 143 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA--------KLMSFPEAIA 194

Query: 140 VPESERHSVADSIDY-QSIEVEPQYSGA 166
                        D  ++IE +P +  A
Sbjct: 195 -------------DCNKAIEKDPNFVRA 209

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 81.1 bits (201), Expect = 2e-17
 Identities = 17/72 (23%), Positives = 28/72 (38%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
             + +AI   ++AIE +      Y  +A A   ++EY SA++    A   D     G   
Sbjct: 187 MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA 246

Query: 88  RGAAYLAMGKFK 99
           R    L     +
Sbjct: 247 REIDQLYYKASQ 258

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 73.7 bits (182), Expect = 4e-15
 Identities = 13/100 (13%), Positives = 28/100 (28%), Gaps = 10/100 (10%)

Query: 47  NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQ 106
            A           K  ++  AI+  +KA E+          R AA    G+++ A+    
Sbjct: 4   MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDI-TYLNNRAAAEYEKGEYETAISTLN 62

Query: 107 QVKKLSPNDPDA-------AQKVKECEKAVKKLKFEEAIA 139
              +                 ++      +     ++ I 
Sbjct: 63  DAVEQGREMRADYKVISKSFARIGNAYHKLG--DLKKTIE 100

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  133 bits (335), Expect = 1e-35
 Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 15/142 (10%)

Query: 11  VSRAEELKALANEAFRAKKYSQAIDLYSQAI---------------ELNSQNAVYYANRA 55
           + ++  +K      F+  KY QA+  Y + +               +  +     + N A
Sbjct: 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203

Query: 56  FAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND 115
             H KL+ + +AI+  +KA+E+D    KG  RRG A+LA+  F+ A  DFQ+V +L PN+
Sbjct: 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263

Query: 116 PDAAQKVKECEKAVKKLKFEEA 137
             A  ++  C++ +++    E 
Sbjct: 264 KAAKTQLAVCQQRIRRQLAREK 285

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  134 bits (339), Expect = 8e-35
 Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           A  LK   N+ FR KKY  AI  Y+ A+EL  ++ V+Y+N +  +  + +    ++ ++K
Sbjct: 6   ALALKDKGNQFFRNKKYDDAIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVEMSTK 64

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVK-KLSPNDPDAAQKVKECEKAVKKL 132
           A+E+ P Y K   RR +A   +GKF +A+ D   +      ND      ++         
Sbjct: 65  ALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMS 124

Query: 133 KFEEAIA 139
           K +E   
Sbjct: 125 KLKEKFG 131

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  114 bits (287), Expect = 6e-28
 Identities = 28/132 (21%), Positives = 45/132 (34%), Gaps = 10/132 (7%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           A  L+      F       A +   +AIEL  +   Y    A       +         K
Sbjct: 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYI-YMALIMADRNDSTEYYNYFDK 295

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA-------AQKVKECE 126
           A+++D      YY RG     +  + +A KDF + K+L P +          A +  + +
Sbjct: 296 ALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFD 355

Query: 127 KAVKKLKFEEAI 138
                  F EA 
Sbjct: 356 DCET--LFSEAK 365

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  110 bits (276), Expect = 2e-26
 Identities = 24/147 (16%), Positives = 44/147 (29%), Gaps = 21/147 (14%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
           + Y QA   + +A EL+ +N   Y   A    +  ++       S+A    P  P+    
Sbjct: 318 QNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNF 377

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA-------AQKVKECEKAVKKLKFEEAIAV 140
                     F +ALK +    +L                K     +      F EA   
Sbjct: 378 FAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATN- 436

Query: 141 PESERHSVADSIDY-QSIEVEPQYSGA 166
                          ++ +++P+   A
Sbjct: 437 ------------LLEKASKLDPRSEQA 451

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  109 bits (274), Expect = 4e-26
 Identities = 28/134 (20%), Positives = 46/134 (34%), Gaps = 13/134 (9%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK---------LEEY 64
            E     A        + +A+  Y  AIEL ++    Y   A    K         +E +
Sbjct: 372 PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENF 431

Query: 65  GSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE 124
             A     KA ++DPR  +         L      EA+  F++   L+    +  Q +  
Sbjct: 432 IEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITF 491

Query: 125 CEKAVKKLKFEEAI 138
            E A    K ++ I
Sbjct: 492 AEAA----KVQQRI 501

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  107 bits (268), Expect = 2e-25
 Identities = 31/143 (21%), Positives = 56/143 (39%), Gaps = 22/143 (15%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
              ++  + + +A++L+S N+  Y +R   +  L+ Y  A +D  KA E+DP     Y +
Sbjct: 284 NDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQ 343

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV---KKLKFEEAIAVPESE 144
                    KF +    F + K+  P  P+          A     K  F++A+      
Sbjct: 344 LACLAYRENKFDDCETLFSEAKRKFPEAPEVP-----NFFAEILTDKNDFDKALK----- 393

Query: 145 RHSVADSIDY-QSIEVEPQYSGA 166
                    Y  +IE+E +  G 
Sbjct: 394 --------QYDLAIELENKLDGI 408

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 96.4 bits (240), Expect = 1e-21
 Identities = 26/157 (16%), Positives = 50/157 (31%), Gaps = 25/157 (15%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP 79
           LA  A+R  K+     L+S+A     +        A   T   ++  A++    AIE++ 
Sbjct: 344 LACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403

Query: 80  RYPKGYYRRGAAYL---------AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130
           +    Y                  +  F EA    ++  KL P    A   + + +   +
Sbjct: 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQE 463

Query: 131 KLKFEEAIAVPESERHSVADSIDY-QSIEVEPQYSGA 166
               +EAI               + +S ++       
Sbjct: 464 --DIDEAIT-------------LFEESADLARTMEEK 485

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 94.0 bits (234), Expect = 6e-21
 Identities = 23/145 (15%), Positives = 46/145 (31%), Gaps = 27/145 (18%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
           + + + +D  ++  +L  + A+   +         +   A +D  KAIE+ PR    Y  
Sbjct: 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRV-NSYIY 275

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA----AQKVKECEKAVKKL-KFEEAIAVPE 142
                       E    F +  KL  N+        Q           L  +++A     
Sbjct: 276 MALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQ-------MNFILQNYDQAGK--- 325

Query: 143 SERHSVADSIDYQ-SIEVEPQYSGA 166
                     D+  + E++P+    
Sbjct: 326 ----------DFDKAKELDPENIFP 340

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 70.2 bits (172), Expect = 3e-13
 Identities = 27/178 (15%), Positives = 66/178 (37%), Gaps = 22/178 (12%)

Query: 46  QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDF 105
           + A+   ++     + ++Y  AI+  + A+E+    P  Y    A Y+++G  K+ ++  
Sbjct: 4   KYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMS 62

Query: 106 QQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSG 165
            +  +L P+      +     + +   KF +A+              D   + +   ++ 
Sbjct: 63  TKALELKPDYSKVLLRRASANEGLG--KFADAMF-------------DLSVLSLNGDFND 107

Query: 166 ARIEGDV------ITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDID 217
           A IE  +        +  +K+   D           + Q   + ++    LPS+  + 
Sbjct: 108 ASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 50.1 bits (120), Expect = 8e-07
 Identities = 11/157 (7%), Positives = 42/157 (26%), Gaps = 22/157 (14%)

Query: 28  KKYSQAIDLYSQA---IELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG 84
            K++ A+   S      + N  +      R      + +      D   A          
Sbjct: 87  GKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQ 146

Query: 85  YYR-------------RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131
             +               A++  + K +    ++ +  +      +    + +       
Sbjct: 147 PAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPE--- 203

Query: 132 LKFEEAIAVPESERHSVADSIDY--QSIEVEPQYSGA 166
             +++A            + +D   +  +++ + + +
Sbjct: 204 -SYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS 239

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 20/179 (11%), Positives = 43/179 (24%), Gaps = 47/179 (26%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAF-------------AHTK 60
            E +           K  +       A    ++ +   A                 +   
Sbjct: 110 IEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFG 169

Query: 61  LEEYGSAIQDASKAIEIDPRYPKG-----------YYRRGAAYL-AMGKFKEALKDFQQV 108
           + +      +  ++ E D     G           Y +   ++  A   F+E L    + 
Sbjct: 170 IFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNED 229

Query: 109 KKLSPNDPDAAQKVKECEKAVKKL---KFEEAIAVPESERHSVADSIDY-QSIEVEPQY 163
           +KL      +          + K        A               D  ++IE+ P+ 
Sbjct: 230 EKLKEKLAIS-----LEHTGIFKFLKNDPLGAHE-------------DIKKAIELFPRV 270

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 17/89 (19%)

Query: 79  PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAI 138
            +Y      +G  +    K+ +A+K +    +L  + P     +  C  +V     ++ +
Sbjct: 3   DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVG--DLKKVV 59

Query: 139 AVPESERHSVADSIDY-QSIEVEPQYSGA 166
                            +++E++P YS  
Sbjct: 60  E-------------MSTKALELKPDYSKV 75

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  122 bits (309), Expect = 1e-30
 Identities = 41/202 (20%), Positives = 80/202 (39%), Gaps = 10/202 (4%)

Query: 7   ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGS 66
            +   + A +LK   N  F AK +++AI  Y  AIEL+    V+Y+N +  +    +   
Sbjct: 18  PSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEK 77

Query: 67  AIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA------- 119
            I+  +KA+EI P + K   RR +A  ++G F +A+ D   +      D  +        
Sbjct: 78  VIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERN 137

Query: 120 ---QKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLD 176
              Q +K   + + K +   +  +P +   +    I    +EV    + +  +     L 
Sbjct: 138 LNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLS 197

Query: 177 FVKKMMDDFKNQKCLHKRYAFQ 198
              + +    ++  L       
Sbjct: 198 DALQRLYSATDEGYLVANDLLT 219

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  107 bits (269), Expect = 2e-25
 Identities = 29/158 (18%), Positives = 52/158 (32%), Gaps = 22/158 (13%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDAS 72
                  LA      +   +    + +A++LN +    Y +R   +  L++Y +A +D  
Sbjct: 275 TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334

Query: 73  KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV--- 129
           KA  ++P     Y +        GKF E+   F + K   P  P+          A    
Sbjct: 335 KAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEV-----PTFFAEILT 389

Query: 130 KKLKFEEAIAVPESERHSVADSIDY-QSIEVEPQYSGA 166
            +  F+ AI               Y  +  +E      
Sbjct: 390 DRGDFDTAIK-------------QYDIAKRLEEVQEKI 414

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 98.6 bits (246), Expect = 2e-22
 Identities = 28/141 (19%), Positives = 45/141 (31%), Gaps = 20/141 (14%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK------------- 60
            E     A        +  AI  Y  A  L       +        K             
Sbjct: 378 PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPT 437

Query: 61  ---LEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117
               E++ +AI+  +KA E+DPR  +         L M K  EA++ F+    L+    +
Sbjct: 438 QLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDE 497

Query: 118 AAQKVKECEKAVKKLKFEEAI 138
             Q     E A    K ++ +
Sbjct: 498 KLQATTFAEAA----KIQKRL 514

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 93.6 bits (233), Expect = 9e-21
 Identities = 22/159 (13%), Positives = 38/159 (23%), Gaps = 27/159 (16%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              L A          Y   +   +    L    A+        H        A     +
Sbjct: 209 EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQE 268

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA----AQKVKECEKAV 129
           +I + P     Y             +E  K FQ+   L+P  P       Q         
Sbjct: 269 SINLHPTP-NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQ-------MY 320

Query: 130 KKL-KFEEAIAVPESERHSVADSIDY-QSIEVEPQYSGA 166
             L  ++ A               D+ ++  + P+    
Sbjct: 321 FILQDYKNAKE-------------DFQKAQSLNPENVYP 346

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 92.9 bits (231), Expect = 2e-20
 Identities = 28/152 (18%), Positives = 51/152 (33%), Gaps = 31/152 (20%)

Query: 29  KYSQAIDLYSQAIELNSQNAVYYA----NRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG 84
            +       +Q   L+      YA    NR       + +  AI+    AIE+DP  P  
Sbjct: 2   SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61

Query: 85  YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA------AQKVKECEKAVKKLKFEEAI 138
           Y    A Y++ G  ++ ++   +  ++ P+   A      A +            F +A+
Sbjct: 62  YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLG--------NFTDAM 113

Query: 139 AVPESERHSVADSIDYQSIEVEPQYSGARIEG 170
                         D   + +   + GA IE 
Sbjct: 114 F-------------DLSVLSLNGDFDGASIEP 132

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 89.8 bits (223), Expect = 2e-19
 Identities = 18/115 (15%), Positives = 37/115 (32%), Gaps = 16/115 (13%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP 79
           LA   ++  K++++   +++               A   T   ++ +AI+    A  ++ 
Sbjct: 350 LACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409

Query: 80  RYPKGYYRRGAA----------------YLAMGKFKEALKDFQQVKKLSPNDPDA 118
              K +   G                   L   KF  A+K   +  +L P    A
Sbjct: 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQA 464

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 75.1 bits (185), Expect = 1e-14
 Identities = 13/105 (12%), Positives = 34/105 (32%), Gaps = 2/105 (1%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
                +        +K++ AI L ++A EL+ ++       A    ++E+   AI+    
Sbjct: 428 LARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFED 487

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
           +  +     +        +    K ++ L+    +          
Sbjct: 488 SAILARTMDEKLQ--ATTFAEAAKIQKRLRADPIISAKMELTLAR 530

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 11/71 (15%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAH-TKLEEYGSAIQDASKAIEIDPRYPKGYY 86
           +K  +AI+L+  +  L            FA   K+++           +  DP       
Sbjct: 476 EKIDEAIELFEDSAILARTMDEKLQATTFAEAAKIQK----------RLRADPIISAKME 525

Query: 87  RRGAAYLAMGK 97
              A Y A G 
Sbjct: 526 LTLARYRAKGM 536

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 47.4 bits (113), Expect = 7e-06
 Identities = 17/135 (12%), Positives = 31/135 (22%), Gaps = 11/135 (8%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
            ++   + NE     +   +  L S     +            +      Y +A    S 
Sbjct: 139 NKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSD 198

Query: 74  AIEIDPRYPKGYYRRGAAYL--AMGKFKEALKDFQQVKKLSPNDPDA-------AQKVKE 124
           A++         Y      L  +   +   L        L  N   A             
Sbjct: 199 ALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNN 258

Query: 125 CEKAVKKLKFEEAIA 139
              A      +E+I 
Sbjct: 259 LLDAQV--LLQESIN 271

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score =  111 bits (279), Expect = 1e-29
 Identities = 23/123 (18%), Positives = 44/123 (35%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
            E+L AL    ++A K+  A  ++     L+  +A Y+         L  Y  A+Q  S 
Sbjct: 18  LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSY 77

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
              +D   P+  +     +L +G    A   F   + L+   P            ++ + 
Sbjct: 78  GALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVT 137

Query: 134 FEE 136
             +
Sbjct: 138 ARK 140

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 74.4 bits (183), Expect = 3e-16
 Identities = 14/103 (13%), Positives = 35/103 (33%), Gaps = 2/103 (1%)

Query: 37  YSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMG 96
            +    L+           F   +  ++  A +       +D    + +   GA   ++G
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 97  KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIA 139
            +++AL+ +     +  N+P       EC   +     + A +
Sbjct: 67  LYEQALQSYSYGALMDINEPRFPFHAAECHLQLG--DLDGAES 107

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  109 bits (273), Expect = 7e-27
 Identities = 32/154 (20%), Positives = 63/154 (40%), Gaps = 17/154 (11%)

Query: 1   MPNMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVY---------- 50
             +  T    +  A+  K   N  F+ +K  +A+  Y  AI     + ++          
Sbjct: 166 ARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMA 225

Query: 51  -------YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALK 103
                  + N A    KL+ Y  AI   +  +  + + PK  +RRG A   +G+   A  
Sbjct: 226 LAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARD 285

Query: 104 DFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEA 137
           DF++ +K +P+D    ++++   +  K L  ++ 
Sbjct: 286 DFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  109 bits (276), Expect = 8e-27
 Identities = 32/157 (20%), Positives = 64/157 (40%), Gaps = 22/157 (14%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              L  L++  F+ ++  ++    + AI+ N   A  Y+N    + +  +   AI+    
Sbjct: 33  TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRH 92

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV--KK 131
           A+ + P +  GY    AA +A G  + A++ +    + +P+           +     K 
Sbjct: 93  ALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCV-----RSDLGNLLKA 147

Query: 132 L-KFEEAIAVPESERHSVADSIDY-QSIEVEPQYSGA 166
           L + EEA A              Y ++IE +P ++ A
Sbjct: 148 LGRLEEAKA-------------CYLKAIETQPNFAVA 171

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  101 bits (254), Expect = 8e-24
 Identities = 30/151 (19%), Positives = 51/151 (33%), Gaps = 22/151 (14%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP 79
           LA     A     A+  Y  A++ N       ++       L     A     KAIE  P
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166

Query: 80  RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV--KKL-KFEE 136
            +   +   G  + A G+   A+  F++   L PN  DA             K+   F+ 
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAY-----INLGNVLKEARIFDR 221

Query: 137 AIAVPESERHSVADSIDY-QSIEVEPQYSGA 166
           A+A              Y +++ + P ++  
Sbjct: 222 AVA-------------AYLRALSLSPNHAVV 239

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  101 bits (253), Expect = 1e-23
 Identities = 24/154 (15%), Positives = 48/154 (31%), Gaps = 28/154 (18%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP 79
           LA+  ++A  +  A     Q       N       +  H +      +   ++ AI+ +P
Sbjct: 5   LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64

Query: 80  RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA------AQKVKECEKAVKKLK 133
              + Y   G  Y   G+ +EA++ ++   +L P+  D       A              
Sbjct: 65  LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG--------D 116

Query: 134 FEEAIAVPESERHSVADSIDY-QSIEVEPQYSGA 166
            E A+               Y  +++  P     
Sbjct: 117 MEGAVQ-------------AYVSALQYNPDLYCV 137

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 98.8 bits (247), Expect = 6e-23
 Identities = 31/146 (21%), Positives = 58/146 (39%), Gaps = 28/146 (19%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
           + + +A+  Y +A+ L+  +AV + N A  + +      AI    +AIE+ P +P  Y  
Sbjct: 217 RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN 276

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA------AQKVKECEKAVKKLKFEEAIAVP 141
              A    G   EA   +    +L P   D+       ++ +           EEA+   
Sbjct: 277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG--------NIEEAVR-- 326

Query: 142 ESERHSVADSIDY-QSIEVEPQYSGA 166
                       Y +++EV P+++ A
Sbjct: 327 -----------LYRKALEVFPEFAAA 341

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 97.6 bits (244), Expect = 1e-22
 Identities = 22/91 (24%), Positives = 41/91 (45%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
              ++A D Y+ A+ L   +A    N A    +      A++   KA+E+ P +   +  
Sbjct: 285 GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN 344

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
             +     GK +EAL  +++  ++SP   DA
Sbjct: 345 LASVLQQQGKLQEALMHYKEAIRISPTFADA 375

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 96.5 bits (241), Expect = 3e-22
 Identities = 24/143 (16%), Positives = 50/143 (34%), Gaps = 22/143 (15%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
            +   AI  + +A+ L+      Y N      +   +  A+    +A+ + P +   +  
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV--KKL-KFEEAIAVPESE 144
               Y   G    A+  +++  +L P+ PDA      C  A   K+     EA       
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAY-----CNLANALKEKGSVAEAED----- 292

Query: 145 RHSVADSIDY-QSIEVEPQYSGA 166
                    Y  ++ + P ++ +
Sbjct: 293 --------CYNTALRLCPTHADS 307

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 74.9 bits (185), Expect = 7e-15
 Identities = 19/77 (24%), Positives = 32/77 (41%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP 79
           LAN         +A+ LY +A+E+  + A  ++N A    +  +   A+    +AI I P
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370

Query: 80  RYPKGYYRRGAAYLAMG 96
            +   Y   G     M 
Sbjct: 371 TFADAYSNMGNTLKEMQ 387

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 72.2 bits (178), Expect = 5e-14
 Identities = 12/123 (9%), Positives = 33/123 (26%), Gaps = 28/123 (22%)

Query: 51  YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKK 110
               A    +  ++ +A +   +    +P          + +    +   +        K
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 111 LSPNDPDA------AQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDY-QSIEVEPQY 163
            +P   +A        K +         + +EAI               Y  ++ ++P +
Sbjct: 62  QNPLLAEAYSNLGNVYKERG--------QLQEAIE-------------HYRHALRLKPDF 100

Query: 164 SGA 166
              
Sbjct: 101 IDG 103

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 8/63 (12%), Positives = 19/63 (30%), Gaps = 9/63 (14%)

Query: 84  GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA-------AQKVKECEKAVKKLKFEE 136
           G           G F+ A +   Q+ +  P++            + +  +++        
Sbjct: 1   GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAH--FSTL 58

Query: 137 AIA 139
           AI 
Sbjct: 59  AIK 61

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score =  105 bits (265), Expect = 2e-26
 Identities = 29/155 (18%), Positives = 56/155 (36%), Gaps = 28/155 (18%)

Query: 19  ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID 78
                      Y +A + +++AIE N ++A+ Y N A   + + E   A+    KA+E+D
Sbjct: 28  QQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD 87

Query: 79  PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA------AQKVKECEKAVKKL 132
                 YY  G  Y+    +KEA   F++  +    + D            E        
Sbjct: 88  SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLE-------- 139

Query: 133 KFEEAIAVPESERHSVADSIDY-QSIEVEPQYSGA 166
           + + A+                 +++E+    + A
Sbjct: 140 QPKLALP-------------YLQRAVELNENDTEA 161

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 98.0 bits (245), Expect = 1e-23
 Identities = 28/146 (19%), Positives = 54/146 (36%), Gaps = 28/146 (19%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
           + Y +A D++ +A+    +N   +        KLE+   A+    +A+E++    +  ++
Sbjct: 105 EMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQ 164

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA------AQKVKECEKAVKKLKFEEAIAVP 141
            G      G   EAL  F  V +  P   DA          KE          E+A+   
Sbjct: 165 FGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKE--------NREKALE-- 214

Query: 142 ESERHSVADSIDY-QSIEVEPQYSGA 166
                         ++I+++P +  A
Sbjct: 215 -----------MLDKAIDIQPDHMLA 229

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 90.3 bits (225), Expect = 7e-21
 Identities = 19/146 (13%), Positives = 42/146 (28%), Gaps = 31/146 (21%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
             +  +  L  +   + S        R       E+   A +  +KAIE +      Y  
Sbjct: 6   HHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEK---AAEAFTKAIEENKEDAIPYIN 62

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA------AQKVKECEKAVKKLKFEEAIAVP 141
                 ++ + + AL  + +  +L  +   A         VKE         ++EA    
Sbjct: 63  FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKE--------MYKEAKD-- 112

Query: 142 ESERHSVADSIDY-QSIEVEPQYSGA 166
                       + +++    +    
Sbjct: 113 -----------MFEKALRAGMENGDL 127

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 73.3 bits (181), Expect = 5e-15
 Identities = 11/70 (15%), Positives = 25/70 (35%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
               +A+  ++   E +  +A  + N    +   E    A++   KAI+I P +    + 
Sbjct: 173 GMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHA 232

Query: 88  RGAAYLAMGK 97
           +         
Sbjct: 233 KKLLGHHHHH 242

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 50.2 bits (121), Expect = 3e-07
 Identities = 15/113 (13%), Positives = 34/113 (30%), Gaps = 32/113 (28%)

Query: 65  GSAIQDASKAIEIDPRYPKGYYRRGAAYL----AMGKFKEALKDFQQVKKLSPNDPDA-- 118
           GS+      +  + PR        G   +      G +++A + F +  + +  D     
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYI 61

Query: 119 ----AQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDY-QSIEVEPQYSGA 166
                             + E A+A              Y +++E++   + A
Sbjct: 62  NFANLLSSVN--------ELERALA-------------FYDKALELDSSAATA 93

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 39.8 bits (94), Expect = 7e-04
 Identities = 3/37 (8%), Positives = 15/37 (40%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEY 64
           +   +A+++  +AI++   + +    +         +
Sbjct: 207 ENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHHH 243

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score =  100 bits (251), Expect = 2e-25
 Identities = 16/117 (13%), Positives = 42/117 (35%), Gaps = 1/117 (0%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
            +++ + A + +   +  +A   +      +  N  Y    A  +   E++  A    + 
Sbjct: 36  MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAV 95

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130
           A  +        +  G   L +    +A + F+ V + S ++     K +    A++
Sbjct: 96  AFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK-LKIKAQSYLDAIQ 151

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 66.0 bits (161), Expect = 3e-13
 Identities = 15/126 (11%), Positives = 30/126 (23%), Gaps = 5/126 (3%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
             E ++++     A               +         + A+          A      
Sbjct: 5   ITENESISTAVIDAINSGAT---LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRF 61

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
               D           A Y    +F++A   +     L  ND        +C+  +K   
Sbjct: 62  LCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLK--A 119

Query: 134 FEEAIA 139
             +A  
Sbjct: 120 PLKAKE 125

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  103 bits (258), Expect = 3e-25
 Identities = 23/91 (25%), Positives = 35/91 (38%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
            + S AI  Y  A++ ++     Y            +  AIQ   K I      PK +Y 
Sbjct: 88  GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYE 147

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
            G AY    ++ +A   F +V +L PN    
Sbjct: 148 LGQAYYYNKEYVKADSSFVKVLELKPNIYIG 178

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  102 bits (257), Expect = 4e-25
 Identities = 22/160 (13%), Positives = 46/160 (28%), Gaps = 25/160 (15%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDAS- 72
            +     A+  F+   Y++AI+++++       +   Y  RA  + +L +Y  A +D   
Sbjct: 3   DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIET 62

Query: 73  --KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV- 129
               +         +   G   +  G+   A++ +Q          D        +    
Sbjct: 63  YFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMY-----GQIGSY 117

Query: 130 --KKLKFEEAIAVPESERHSVADSIDY-QSIEVEPQYSGA 166
              K  F  AI                 + I         
Sbjct: 118 FYNKGNFPLAIQ-------------YMEKQIRPTTTDPKV 144

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 97.7 bits (244), Expect = 2e-23
 Identities = 21/149 (14%), Positives = 47/149 (31%), Gaps = 31/149 (20%)

Query: 28  KKYSQAI---DLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG 84
            KY  A    + Y   +      +  +        K  +   AIQ    A++ D      
Sbjct: 51  AKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDM 110

Query: 85  YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA------AQKVKECEKAVKKLKFEEAI 138
           Y + G+ +   G F  A++  ++  + +  DP        A    +        ++ +A 
Sbjct: 111 YGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK--------EYVKAD 162

Query: 139 AVPESERHSVADSIDY-QSIEVEPQYSGA 166
           +              + + +E++P     
Sbjct: 163 S-------------SFVKVLELKPNIYIG 178

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 95.0 bits (237), Expect = 2e-22
 Identities = 23/165 (13%), Positives = 51/165 (30%), Gaps = 27/165 (16%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
            +    + +  +    +  AI    + I   + +   +     A+   +EY  A     K
Sbjct: 108 LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVK 167

Query: 74  AIEIDPRYPKGYYRRGAAYLAMG---KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130
            +E+ P    GY  R  A  A     K   A   ++++ ++        +   E  +A +
Sbjct: 168 VLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYK--DELIEANE 225

Query: 131 KL--------KFEEAIAVPESERHSVADSIDY-QSIEVEPQYSGA 166
            +           +A A              +   + ++P    A
Sbjct: 226 YIAYYYTINRDKVKADA-------------AWKNILALDPTNKKA 257

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 75.4 bits (186), Expect = 2e-15
 Identities = 20/130 (15%), Positives = 31/130 (23%), Gaps = 31/130 (23%)

Query: 47  NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQ 106
           N       A    K   Y  AI+  +K        P  Y RR   Y  + K+  A KD +
Sbjct: 2   NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61

Query: 107 QVKK---LSPNDPDA------AQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDY-QS 156
                   +                K         +   AI               Y  +
Sbjct: 62  TYFSKVNATKAKSADFEYYGKILMKKG--------QDSLAIQ-------------QYQAA 100

Query: 157 IEVEPQYSGA 166
           ++ +      
Sbjct: 101 VDRDTTRLDM 110

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 61.9 bits (151), Expect = 6e-11
 Identities = 11/73 (15%), Positives = 19/73 (26%), Gaps = 8/73 (10%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVY--------YANRAFAHTKLEEYGSAIQDASKAIEIDP 79
            K   A   Y + IE+ +                 A+ +T   +   A       + +DP
Sbjct: 193 TKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDP 252

Query: 80  RYPKGYYRRGAAY 92
              K         
Sbjct: 253 TNKKAIDGLKMKL 265

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 99.6 bits (248), Expect = 3e-25
 Identities = 21/126 (16%), Positives = 49/126 (38%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
            E+L +LA   +++  Y  A  ++     L+  ++ ++         + +Y  AI   S 
Sbjct: 21  LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSY 80

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
              +D   P+  +      L  G+  EA       ++L  N P+  +        ++ +K
Sbjct: 81  GAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIK 140

Query: 134 FEEAIA 139
            ++ + 
Sbjct: 141 LKKEMK 146

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 73.0 bits (179), Expect = 1e-15
 Identities = 18/116 (15%), Positives = 33/116 (28%), Gaps = 5/116 (4%)

Query: 29  KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88
                    +   E++S       + AF   +   Y  A         +D    + +   
Sbjct: 2   PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61

Query: 89  GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK-----FEEAIA 139
           GA   AMG++  A+  +     +   +P       EC     +L         A  
Sbjct: 62  GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  104 bits (261), Expect = 6e-25
 Identities = 28/148 (18%), Positives = 67/148 (45%), Gaps = 16/148 (10%)

Query: 2   PNMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAI----------------ELNS 45
            +++  +  +  +E+LK + N  F+++ +  AI  Y++ +                +L  
Sbjct: 211 VDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQP 270

Query: 46  QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDF 105
                  N      K+ ++  A+    +A+EIDP   K  YRR   +  + ++ +AL D 
Sbjct: 271 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADL 330

Query: 106 QQVKKLSPNDPDAAQKVKECEKAVKKLK 133
           ++ ++++P D     ++ + ++ +K  K
Sbjct: 331 KKAQEIAPEDKAIQAELLKVKQKIKAQK 358

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  104 bits (261), Expect = 2e-24
 Identities = 17/133 (12%), Positives = 37/133 (27%), Gaps = 9/133 (6%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              + +        +   + + +  QA  L  +  V  A+       LE     +    +
Sbjct: 344 VVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQ 403

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA-------AQKVKECE 126
           A  + P              A+   +  L    Q   L+P    A          ++   
Sbjct: 404 AHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIV 463

Query: 127 KAVKKLKFEEAIA 139
             +   + + A+A
Sbjct: 464 AQLS--RPDPALA 474

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  103 bits (259), Expect = 3e-24
 Identities = 21/154 (13%), Positives = 43/154 (27%), Gaps = 16/154 (10%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              + +        +     + +  QA  L  +  V  A+       LE     +    +
Sbjct: 140 VVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQ 199

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
           A  + P+        G    A+   +  L    Q   L+P    A       ++A++   
Sbjct: 200 AHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE--T 257

Query: 134 FEEAIAVPESERHSVADSIDY-QSIEVEPQYSGA 166
            +  +                 Q+  + PQ   A
Sbjct: 258 VQRLLP-------------VLCQAHGLTPQQVVA 278

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  103 bits (259), Expect = 4e-24
 Identities = 22/154 (14%), Positives = 43/154 (27%), Gaps = 16/154 (10%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              + +        +   + + +  QA  L  Q  V  A+       LE     +    +
Sbjct: 310 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQ 369

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
           A  + P         G    A+   +  L    Q   L+P    A       ++A++   
Sbjct: 370 AHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALE--T 427

Query: 134 FEEAIAVPESERHSVADSIDY-QSIEVEPQYSGA 166
            +  +                 Q+  + PQ   A
Sbjct: 428 VQRLLP-------------VLCQAHGLTPQQVVA 448

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  102 bits (257), Expect = 6e-24
 Identities = 21/154 (13%), Positives = 43/154 (27%), Gaps = 16/154 (10%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              + +        +   + + +  QA  L  Q  V  A+       LE     +    +
Sbjct: 72  VVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQ 131

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
           A  + P              A+   +  L    Q   L+P    A       ++A++ + 
Sbjct: 132 AHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETV- 190

Query: 134 FEEAIAVPESERHSVADSIDY-QSIEVEPQYSGA 166
            +  +                 Q+  + PQ   A
Sbjct: 191 -QRLLP-------------VLCQAHGLTPQQVVA 210

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  102 bits (257), Expect = 6e-24
 Identities = 21/154 (13%), Positives = 44/154 (28%), Gaps = 16/154 (10%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              + +        +   + + +  QA  L  Q  V  A+       LE     +    +
Sbjct: 208 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQ 267

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
           A  + P+             A+   +  L    Q   L+P    A       ++A++ + 
Sbjct: 268 AHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETV- 326

Query: 134 FEEAIAVPESERHSVADSIDY-QSIEVEPQYSGA 166
            +  +                 Q+  + PQ   A
Sbjct: 327 -QRLLP-------------VLCQAHGLTPQQVVA 346

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  101 bits (253), Expect = 2e-23
 Identities = 20/108 (18%), Positives = 32/108 (29%), Gaps = 3/108 (2%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
           +   + + +  QA  L  +  V  A+       LE     +    +A  + P+       
Sbjct: 392 ETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 451

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKV---KECEKAVKKL 132
            G    A+      L           ND   A      +    AVKKL
Sbjct: 452 NGGGRPALESIVAQLSRPDPALAALTNDHLVALACLGGRPALDAVKKL 499

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  101 bits (253), Expect = 2e-23
 Identities = 20/154 (12%), Positives = 44/154 (28%), Gaps = 16/154 (10%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              + + +      +   + + +  QA  L  Q  V  A+       LE     +    +
Sbjct: 276 VVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQ 335

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
           A  + P+             A+   +  L    Q   L+P    A       ++A++   
Sbjct: 336 AHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALE--T 393

Query: 134 FEEAIAVPESERHSVADSIDY-QSIEVEPQYSGA 166
            +  +                 Q+  + P+   A
Sbjct: 394 VQRLLP-------------VLCQAHGLTPEQVVA 414

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 96.0 bits (239), Expect = 1e-21
 Identities = 23/148 (15%), Positives = 44/148 (29%), Gaps = 18/148 (12%)

Query: 19  ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID 78
             A EA     +  A  L    + L  +  V  A+       LE     +    +A  + 
Sbjct: 47  VTAVEA--VHAWRNA--LTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 102

Query: 79  PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAI 138
           P+             A+   +  L    Q   L+P    A       ++A++ +  +  +
Sbjct: 103 PQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETV--QALL 160

Query: 139 AVPESERHSVADSIDYQSIEVEPQYSGA 166
            V              Q+  + P+   A
Sbjct: 161 PVLC------------QAHGLTPEQVVA 176

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 82.1 bits (203), Expect = 4e-17
 Identities = 18/159 (11%), Positives = 45/159 (28%), Gaps = 20/159 (12%)

Query: 11  VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANR--AFAHTKLEEYGSAI 68
           +         +         + A +L    ++L++   +  A R    A   +  + +A+
Sbjct: 1   LEHHHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNAL 60

Query: 69  QDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA 128
                 + + P              A+   +  L    Q   L+P    A       ++A
Sbjct: 61  TG--APLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQA 118

Query: 129 VKKLKFEEAIAVPESERHSVADSIDY-QSIEVEPQYSGA 166
           ++    +  +                 Q+  + P+   A
Sbjct: 119 LE--TVQRLLP-------------VLCQAHGLTPEQVVA 142

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 67.9 bits (166), Expect = 2e-12
 Identities = 13/94 (13%), Positives = 27/94 (28%), Gaps = 7/94 (7%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              + +        +   + + +  QA  L  Q  V  A+       LE   + +     
Sbjct: 412 VVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDP 471

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQ 107
           A+               A   +G  + AL   ++
Sbjct: 472 ALAALTND------HLVALACLGG-RPALDAVKK 498

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  102 bits (254), Expect = 8e-24
 Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 15/132 (11%)

Query: 21  ANEAFRAKKYSQAIDLYSQAI------------ELNSQNAVY---YANRAFAHTKLEEYG 65
               F+  KY QA+  Y + +            E  +  +     + N A  + KL EY 
Sbjct: 275 GTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYT 334

Query: 66  SAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125
            A++   KA+ +D    KG YRRG A L M +F+ A  DF++V +++P +  A  ++  C
Sbjct: 335 KAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMC 394

Query: 126 EKAVKKLKFEEA 137
           +K  K+    + 
Sbjct: 395 QKKAKEHNERDR 406

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 97.1 bits (242), Expect = 1e-23
 Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 4/100 (4%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP 79
               A   K +  A+D +S   + +S+      N    +T L+    A +  +++I  D 
Sbjct: 12  EGVLAADKKDWKGALDAFSAVQDPHSR---ICFNIGCMYTILKNMTEAEKAFTRSINRDK 68

Query: 80  RYPKGYYRRGAAYLAMGKFKEALKDFQQV-KKLSPNDPDA 118
                Y++RG  Y    K+  A+KD ++   +L  N    
Sbjct: 69  HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLID 108

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 85.9 bits (213), Expect = 1e-19
 Identities = 23/133 (17%), Positives = 49/133 (36%), Gaps = 18/133 (13%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAI-EIDPRYPKGYY 86
           K  ++A   ++++I  +   AV Y  R   + + E+Y  AI+D  +A+ ++       Y 
Sbjct: 51  KNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYK 110

Query: 87  R---------------RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131
                               Y    ++K+A +       +      +  K+ +  + V K
Sbjct: 111 ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHS--KIDKAMECVWK 168

Query: 132 LKFEEAIAVPESE 144
            K  E + +P   
Sbjct: 169 QKLYEPVVIPVGR 181

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 66.7 bits (163), Expect = 5e-13
 Identities = 15/104 (14%), Positives = 36/104 (34%), Gaps = 12/104 (11%)

Query: 43  LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL 102
           ++   A+   N        +++  A+   S    +   + +  +  G  Y  +    EA 
Sbjct: 1   MSLVEAISLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAE 57

Query: 103 KDFQQVKKLSPNDPDA-------AQKVKECEKAVKKLKFEEAIA 139
           K F +      +   A         + ++ + A+K    +EA+ 
Sbjct: 58  KAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIK--DLKEALI 99

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 52.0 bits (125), Expect = 6e-08
 Identities = 20/125 (16%), Positives = 38/125 (30%), Gaps = 28/125 (22%)

Query: 25  FRAKKYSQAIDLYSQAIELNSQN----------------AVYYANRAFAHTKLEEYGSAI 68
           ++ +KY  AI    +A+     N                     N AF + K EE+  A 
Sbjct: 82  YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE 141

Query: 69  QDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA 128
           +  + A  +                      +A++   + K   P      +  +  E+ 
Sbjct: 142 EQLALATSMKSEPRHSKID------------KAMECVWKQKLYEPVVIPVGRLFRPNERQ 189

Query: 129 VKKLK 133
           V +L 
Sbjct: 190 VAQLA 194

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 98.1 bits (245), Expect = 2e-23
 Identities = 24/106 (22%), Positives = 40/106 (37%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDAS 72
           RA+ L             + A + +SQA+ +       +       T+   + +A +   
Sbjct: 42  RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD 101

Query: 73  KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
             +E+DP Y   +  RG A    G+ K A  D     +  PNDP  
Sbjct: 102 SVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFR 147

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 90.4 bits (225), Expect = 1e-20
 Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 4/113 (3%)

Query: 10  SVSRAEELKALANEAFRAKKYSQAIDLYSQAIE----LNSQNAVYYANRAFAHTKLEEYG 65
           S +   + + LA       +    +    Q +      + + A     R   +  L    
Sbjct: 1   SNTSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRA 60

Query: 66  SAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
            A  D S+A+ I P  P+ +   G      G F  A + F  V +L P    A
Sbjct: 61  LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA 113

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 80.4 bits (199), Expect = 3e-17
 Identities = 17/120 (14%), Positives = 40/120 (33%), Gaps = 7/120 (5%)

Query: 24  AFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYG---SAIQDASKAIEIDPR 80
           A +     QA ++  Q  E + +    +    F    + E         DA+    +   
Sbjct: 154 AEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEH 213

Query: 81  YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL-KFEEAIA 139
             +  +  G  YL++G    A   F+     + ++       +     +  L + ++ +A
Sbjct: 214 LSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH---RYALLELSLLGQDQDDLA 270

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 78.9 bits (195), Expect = 9e-17
 Identities = 8/79 (10%), Positives = 21/79 (26%)

Query: 29  KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88
              +     +    L    +         +  L +  SA      A+  +      +   
Sbjct: 196 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYA 255

Query: 89  GAAYLAMGKFKEALKDFQQ 107
                 +G+ ++ L +  Q
Sbjct: 256 LLELSLLGQDQDDLAESDQ 274

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 8/54 (14%), Positives = 17/54 (31%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           L            A  L+  A+  N  N V +       + L +    + ++ +
Sbjct: 221 LGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  101 bits (253), Expect = 4e-23
 Identities = 20/154 (12%), Positives = 42/154 (27%), Gaps = 16/154 (10%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              + +        +   + + +  QA  L     V  A+       LE     +    +
Sbjct: 226 VVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQ 285

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
           A  + P         G    A+   +  L    Q   L+P+   A       ++A++   
Sbjct: 286 AHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALE--T 343

Query: 134 FEEAIAVPESERHSVADSIDY-QSIEVEPQYSGA 166
            +  +                 Q+  + P    A
Sbjct: 344 VQRLLP-------------VLCQAHGLTPDQVVA 364

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 98.6 bits (245), Expect = 4e-22
 Identities = 19/154 (12%), Positives = 41/154 (26%), Gaps = 16/154 (10%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              + +        +   + + +  QA  L     V  A+       LE     +    +
Sbjct: 192 VVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQ 251

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
           A  + P              A+   +  L    Q   L+P+   A       ++A++   
Sbjct: 252 AHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALE--T 309

Query: 134 FEEAIAVPESERHSVADSIDY-QSIEVEPQYSGA 166
            +  +                 Q+  + P    A
Sbjct: 310 VQRLLP-------------VLCQAHGLTPDQVVA 330

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 93.9 bits (233), Expect = 1e-20
 Identities = 19/153 (12%), Positives = 42/153 (27%), Gaps = 14/153 (9%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              + +        +   + + +  QA  L     V  A+       LE     +    +
Sbjct: 633 VVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ 692

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
           A  +                A+   +  L    Q   L+P+   A       ++A++ + 
Sbjct: 693 AHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETV- 751

Query: 134 FEEAIAVPESERHSVADSIDYQSIEVEPQYSGA 166
            +  + V              Q+  + P    A
Sbjct: 752 -QRLLPVLC------------QAHGLTPAQVVA 771

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 90.9 bits (225), Expect = 1e-19
 Identities = 16/105 (15%), Positives = 30/105 (28%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              + +        +   + + +  QA  L     V  A+       LE     +    +
Sbjct: 294 VVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQ 353

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
           A  + P         G    A+   +  L    Q   L+P+   A
Sbjct: 354 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVA 398

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 90.9 bits (225), Expect = 1e-19
 Identities = 21/156 (13%), Positives = 44/156 (28%), Gaps = 23/156 (14%)

Query: 12  SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDA 71
           S     +AL       +   + + +  QA  L     V  A+       LE     +   
Sbjct: 570 SNGGGKQAL-------ETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVL 622

Query: 72  SKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131
            +A  + P              A+   +  L    Q   L+P+   A       ++A++ 
Sbjct: 623 CQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALET 682

Query: 132 LKFEEAIAVPESERHSVADSIDY-QSIEVEPQYSGA 166
           +  +  +                 Q+  +  +   A
Sbjct: 683 V--QRLLP-------------VLCQAHGLTQEQVVA 703

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 89.3 bits (221), Expect = 3e-19
 Identities = 21/150 (14%), Positives = 37/150 (24%), Gaps = 22/150 (14%)

Query: 19  ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID 78
             A EA     ++    L    + L     V  A+       LE     +    +A  + 
Sbjct: 167 VTAMEAV----HASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLT 222

Query: 79  PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL-KFEEA 137
           P              A+   +  L    Q   L P+   A   +       + L   +  
Sbjct: 223 PAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVA---IASNIGGKQALETVQRL 279

Query: 138 IAVPESERHSVADSIDY-QSIEVEPQYSGA 166
           +                 Q+  + P    A
Sbjct: 280 LP-------------VLCQAHGLTPDQVVA 296

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 88.5 bits (219), Expect = 6e-19
 Identities = 18/155 (11%), Positives = 38/155 (24%), Gaps = 18/155 (11%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              + +        +   + + +  QA  L     V  A+       LE     +    +
Sbjct: 531 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ 590

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL- 132
           A  +                A+   +  L    Q   L+P    A   +   +   + L 
Sbjct: 591 AHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVA---IASHDGGKQALE 647

Query: 133 KFEEAIAVPESERHSVADSIDY-QSIEVEPQYSGA 166
             +  +                 Q+  + P    A
Sbjct: 648 TVQRLLP-------------VLCQAHGLTPDQVVA 669

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 87.4 bits (216), Expect = 1e-18
 Identities = 18/154 (11%), Positives = 40/154 (25%), Gaps = 16/154 (10%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              + +        +   + + +  Q   L     V  A+       LE     +    +
Sbjct: 429 VVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQ 488

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
           A  + P              A+   +  L    Q   L+P+   A       ++A++   
Sbjct: 489 AHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALE--T 546

Query: 134 FEEAIAVPESERHSVADSIDY-QSIEVEPQYSGA 166
            +  +                 Q+  + P    A
Sbjct: 547 VQRLLP-------------VLCQAHGLTPDQVVA 567

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 87.0 bits (215), Expect = 2e-18
 Identities = 17/133 (12%), Positives = 35/133 (26%), Gaps = 9/133 (6%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              + +            + + +  QA  L     V  A+       LE     +    +
Sbjct: 497 VVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ 556

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA-------AQKVKECE 126
           A  + P         G    A+   +  L    Q   L+     A        Q ++  +
Sbjct: 557 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQ 616

Query: 127 KAVKKLKFEEAIA 139
           + +      +A  
Sbjct: 617 RLL--PVLCQAHG 627

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 85.9 bits (212), Expect = 5e-18
 Identities = 20/154 (12%), Positives = 43/154 (27%), Gaps = 17/154 (11%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              + +        +   + + +  QA  L     V  A+       LE     +    +
Sbjct: 328 VVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ 387

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
           A  + P         G    A+   +  L    Q   L+P+   A       ++A++ + 
Sbjct: 388 AHGLTPDQVVAIASNGGKQ-ALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETV- 445

Query: 134 FEEAIAVPESERHSVADSIDY-QSIEVEPQYSGA 166
            +  +                 Q+  + P    A
Sbjct: 446 -QRLLP-------------VLCQTHGLTPAQVVA 465

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 82.8 bits (204), Expect = 4e-17
 Identities = 19/138 (13%), Positives = 38/138 (27%), Gaps = 14/138 (10%)

Query: 29  KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88
              + + +  QA  L     V  A+       LE     +    +   + P         
Sbjct: 410 TVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASH 469

Query: 89  GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSV 148
                A+   ++ L    Q   L+P+   A       ++A+     +  + V        
Sbjct: 470 DGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALA--TVQRLLPVLC------ 521

Query: 149 ADSIDYQSIEVEPQYSGA 166
                 Q+  + P    A
Sbjct: 522 ------QAHGLTPDQVVA 533

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 75.8 bits (186), Expect = 7e-15
 Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 10/136 (7%)

Query: 13  RAEELK-----ALAN--EAFRA-KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEY 64
           +A  L      A+A+     +A +   + + +  QA  L     V  A+       LE  
Sbjct: 692 QAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETV 751

Query: 65  GSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE 124
              +    +A  + P              A+   +  L    Q   L+     A      
Sbjct: 752 QRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIG 811

Query: 125 CEKAVKKLKFEEAIAV 140
            ++A++    +  + V
Sbjct: 812 GKQALE--TVQRLLPV 825

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 71.6 bits (175), Expect = 2e-13
 Identities = 23/148 (15%), Positives = 44/148 (29%), Gaps = 18/148 (12%)

Query: 19  ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID 78
           A A EA      + A +L    ++L++   V  A R         + S        + + 
Sbjct: 133 ARALEA----LLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLT 188

Query: 79  PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAI 138
           P              A+   +  L    Q   L+P    A       ++A++ +  +  +
Sbjct: 189 PAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETM--QRLL 246

Query: 139 AVPESERHSVADSIDYQSIEVEPQYSGA 166
            V              Q+  + P    A
Sbjct: 247 PVLC------------QAHGLPPDQVVA 262

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 69.7 bits (170), Expect = 6e-13
 Identities = 19/155 (12%), Positives = 40/155 (25%), Gaps = 21/155 (13%)

Query: 12  SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDA 71
           S     +AL       +   + + +  QA  L     V  A+       LE     +   
Sbjct: 740 SNGGGKQAL-------ETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVL 792

Query: 72  SKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131
            +   +                A+   +  L    Q   L+ +   A       ++A++ 
Sbjct: 793 CQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALE- 851

Query: 132 LKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA 166
              +  +             +  Q   + P    A
Sbjct: 852 -TVQRLLP------------VLCQDHGLTPDQVVA 873

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 60.0 bits (145), Expect = 7e-10
 Identities = 12/102 (11%), Positives = 29/102 (28%), Gaps = 2/102 (1%)

Query: 19   ALANEAFRA--KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE 76
            A+A+   +   +   + + +  Q   L     V  A+ +     LE     +    +   
Sbjct: 907  AIASNGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHG 966

Query: 77   IDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
            + P         G          +  +    +  L+ +   A
Sbjct: 967  LTPNQVVAIASNGGKQALESIVAQLSRPDPALAALTNDHLVA 1008

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 60.0 bits (145), Expect = 8e-10
 Identities = 18/139 (12%), Positives = 37/139 (26%), Gaps = 15/139 (10%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
           +   + + +  Q   L     V  A+       LE     +    +   +          
Sbjct: 851 ETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIAS 910

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHS 147
            G    A+   +  L    Q   L+P+   A       ++A++    +  + V       
Sbjct: 911 NG-GKQALETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALE--TVQRLLPVLC----- 962

Query: 148 VADSIDYQSIEVEPQYSGA 166
                  Q   + P    A
Sbjct: 963 -------QDHGLTPNQVVA 974

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 59.7 bits (144), Expect = 1e-09
 Identities = 19/131 (14%), Positives = 38/131 (29%), Gaps = 5/131 (3%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDAS 72
           +   + +        +   + + +  Q   L     V  A+       LE     +    
Sbjct: 870 QVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNGGKQ-ALETVQRLLPVLC 928

Query: 73  KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA---AQKVKECEKAV 129
           +   + P              A+   +  L    Q   L+PN   A       +  E  V
Sbjct: 929 QDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAIASNGGKQALESIV 988

Query: 130 KKL-KFEEAIA 139
            +L + + A+A
Sbjct: 989 AQLSRPDPALA 999

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 99.5 bits (248), Expect = 1e-22
 Identities = 23/128 (17%), Positives = 44/128 (34%), Gaps = 9/128 (7%)

Query: 19  ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID 78
           A+        K S+A   +S++  ++ Q    +   A +     E+  AI   + A  + 
Sbjct: 378 AVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437

Query: 79  PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA-------AQKVKECEKAVKK 131
                 Y   G  ++ +G    A +  Q    L   DP         A    + + A+  
Sbjct: 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAIN- 496

Query: 132 LKFEEAIA 139
             F+ A+ 
Sbjct: 497 -HFQNALL 503

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 90.7 bits (225), Expect = 9e-20
 Identities = 17/105 (16%), Positives = 40/105 (38%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           ++ L   A+  F   ++   + + ++ +E++  N   Y     +  +  E       ++ 
Sbjct: 305 SDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISND 364

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
            ++  P     +   G  YL + K  EA + F +   + P    A
Sbjct: 365 LVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPA 409

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 88.7 bits (220), Expect = 4e-19
 Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIEL-------NSQNAVYYANRAFAHTKLEEYGSAIQDAS 72
           L   AF       AI+ +  A+ L           A  +AN   A+ KL+ Y +AI   +
Sbjct: 481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540

Query: 73  KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125
           + + +       +      YL       A+    +   +SPN+  A+  +K  
Sbjct: 541 QGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 85.3 bits (211), Expect = 5e-18
 Identities = 10/91 (10%), Positives = 36/91 (39%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
            + ++   + +  ++ + + AV +      +  + +   A +  SK+  +DP++   +  
Sbjct: 353 GEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIG 412

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
              ++   G+  +A+  +    +L       
Sbjct: 413 FAHSFAIEGEHDQAISAYTTAARLFQGTHLP 443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 84.5 bits (209), Expect = 8e-18
 Identities = 22/126 (17%), Positives = 37/126 (29%), Gaps = 5/126 (3%)

Query: 19  ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID 78
             A+      ++ QAI  Y+ A  L     + Y      H +L     A +    +  + 
Sbjct: 412 GFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471

Query: 79  PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE----KAVKKL-K 133
              P      G         + A+  FQ    L        +           A +KL  
Sbjct: 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531

Query: 134 FEEAIA 139
           ++ AI 
Sbjct: 532 YDAAID 537

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 80.7 bits (199), Expect = 2e-16
 Identities = 14/105 (13%), Positives = 30/105 (28%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              L  L       +   +  + Y  +I    +++     +A        +   +   +K
Sbjct: 271 LRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTK 330

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
            +EIDP     Y    A+    G+  +       +    P     
Sbjct: 331 ILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVT 375

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 68.7 bits (168), Expect = 1e-12
 Identities = 16/73 (21%), Positives = 29/73 (39%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP 79
           L +   + K Y  AID  +Q + L++ +A  +   A  +   +  G AI    +++ I P
Sbjct: 522 LGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581

Query: 80  RYPKGYYRRGAAY 92
                      A 
Sbjct: 582 NEIMASDLLKRAL 594

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 63.7 bits (155), Expect = 4e-11
 Identities = 11/92 (11%), Positives = 30/92 (32%), Gaps = 1/92 (1%)

Query: 28  KKYSQAIDL-YSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86
           +++   + L YS   + ++             T  E+     +D   +I    +      
Sbjct: 250 EEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLL 309

Query: 87  RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
            +        +F + L    ++ ++ P + D 
Sbjct: 310 CKADTLFVRSRFIDVLAITTKILEIDPYNLDV 341

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 58.3 bits (141), Expect = 2e-09
 Identities = 22/142 (15%), Positives = 45/142 (31%), Gaps = 19/142 (13%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQ---------- 69
           LA        Y++A  L ++    N  +A  Y   AF   KL ++  A+           
Sbjct: 123 LAQVYCCTGDYARAKCLLTKEDLYNRSSACRY-LAAFCLVKLYDWQGALNLLGETNPFRK 181

Query: 70  -------DASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKV 122
                     +   I        Y RG  Y  +  F  A + +++   +     +A  ++
Sbjct: 182 DEKNANKLLMQDGGIKLE-ASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQL 240

Query: 123 KECEKAVKKLKFEEAIAVPESE 144
                     +++  + +  S 
Sbjct: 241 VSNHLLTADEEWDLVLKLNYST 262

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 58.3 bits (141), Expect = 3e-09
 Identities = 15/129 (11%), Positives = 40/129 (31%), Gaps = 5/129 (3%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAH--TKLEEYGSAIQ-D 70
           A               + +A + Y +A+ ++++    +      H  T  EE+   ++ +
Sbjct: 200 ASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLN 259

Query: 71  ASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130
            S   + D  + +  Y       +        +D+           D      +      
Sbjct: 260 YSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLF--V 317

Query: 131 KLKFEEAIA 139
           + +F + +A
Sbjct: 318 RSRFIDVLA 326

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 17/107 (15%), Positives = 35/107 (32%), Gaps = 1/107 (0%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
              L  L       K    A  L  Q   +  + ++ Y  R   +T L  +  A +   +
Sbjct: 167 QGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCY-LRGQVYTNLSNFDRAKECYKE 225

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120
           A+ +D +  + + +  + +L     +  L         S  D    +
Sbjct: 226 ALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 21/169 (12%), Positives = 46/169 (27%), Gaps = 11/169 (6%)

Query: 1   MPNMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK 60
                  N+S S+   L             +    L  +  +     +     R + H  
Sbjct: 35  SMGALNANNSNSQLSTLTISPMTYLANNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDA 94

Query: 61  LEE--YGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
           L +  Y  A     K ++I    P   +     Y   G +  A     +    + +    
Sbjct: 95  LMQQQYKCAAFVGEKVLDITGN-PNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACR 153

Query: 119 AQKVKECEKAVKKLKFEEAIAV-----PESERHSVADSIDYQSIEVEPQ 162
                   K      ++ A+ +     P  +    A+ +  Q   ++ +
Sbjct: 154 YLAAFCLVKL---YDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLE 199

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 93.3 bits (233), Expect = 2e-22
 Identities = 22/146 (15%), Positives = 49/146 (33%), Gaps = 28/146 (19%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
            +YSQA+ L  Q  + ++ +     +   A+ K        +   +++   P   K    
Sbjct: 22  GRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATV 81

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA------AQKVKECEKAVKKLKFEEAIAVP 141
            G  Y+ + K+  A+    +V + +P + +       A             +F+EAI   
Sbjct: 82  LGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLG--------RFDEAID-- 131

Query: 142 ESERHSVADSIDY-QSIEVEPQYSGA 166
                       +  ++ + P     
Sbjct: 132 -----------SFKIALGLRPNEGKV 146

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 89.0 bits (222), Expect = 5e-21
 Identities = 22/91 (24%), Positives = 35/91 (38%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
           +KY  A+ L  +  E N  N         A   L  +  AI     A+ + P   K +  
Sbjct: 90  QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRA 149

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
              +Y  MG+ +EAL  F++  +L       
Sbjct: 150 IAFSYEQMGRHEEALPHFKKANELDEGASVE 180

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 77.9 bits (193), Expect = 4e-17
 Identities = 17/133 (12%), Positives = 37/133 (27%), Gaps = 28/133 (21%)

Query: 41  IELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKE 100
           +  +    VYY ++  +H K   Y  A+    +  + D          G AY+  G    
Sbjct: 1   MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60

Query: 101 ALKDFQQVKKLSPNDPDA------AQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDY 154
             +  ++    +P++              +        K++ A+                
Sbjct: 61  GTELLERSLADAPDNVKVATVLGLTYVQVQ--------KYDLAVP-------------LL 99

Query: 155 -QSIEVEPQYSGA 166
            +  E  P     
Sbjct: 100 IKVAEANPINFNV 112

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 94.0 bits (234), Expect = 2e-22
 Identities = 25/170 (14%), Positives = 55/170 (32%), Gaps = 29/170 (17%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA----------------VYYANRAFA 57
            +E+    + A  A +  QA+  + Q I LN                          A A
Sbjct: 4   VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALA 63

Query: 58  HTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117
           + K   Y  A     + ++  P             +  G+ K+AL+ ++++ +L  ++  
Sbjct: 64  YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA 123

Query: 118 AAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGAR 167
           A   +        + + ++ +              DY+ +    +   AR
Sbjct: 124 ANIFLGNYYYLTAE-QEKKKLE------------TDYKKLSSPTKMQYAR 160

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 90.2 bits (224), Expect = 3e-21
 Identities = 25/167 (14%), Positives = 49/167 (29%), Gaps = 11/167 (6%)

Query: 3   NMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE 62
               + +S   ++    LA    + + Y +A   Y + ++    N       A       
Sbjct: 43  WTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRG 102

Query: 63  EYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMG-KFKEALKDFQQVKKLSPNDPDA--- 118
           +   A++   K ++++          G  Y     + K+ L+   +          A   
Sbjct: 103 QEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYR 162

Query: 119 ----AQKVKECEKAVKKLKFEEAIAV-PESERHSVADSIDYQSIEVE 160
                      EKA      ++ I   P +E     D I     EV 
Sbjct: 163 DGLSKLFTTRYEKARN--SLQKVILRFPSTEAQKTLDKILRIEKEVN 207

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 63.2 bits (154), Expect = 8e-12
 Identities = 19/141 (13%), Positives = 47/141 (33%), Gaps = 32/141 (22%)

Query: 45  SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR---------------- 88
            Q+      +  A  +  + G A+    + I ++    + YY                  
Sbjct: 1   GQSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATEL 60

Query: 89  GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSV 148
             AY     + +A   ++++ + +PN+ D  +   E +      + ++A+          
Sbjct: 61  ALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRG--QEKDALR--------- 109

Query: 149 ADSIDYQ-SIEVEPQYSGARI 168
                Y+  +++E     A I
Sbjct: 110 ----MYEKILQLEADNLAANI 126

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 95.8 bits (239), Expect = 3e-22
 Identities = 16/154 (10%), Positives = 44/154 (28%), Gaps = 1/154 (0%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
            E          +    ++A   +    +   +    + +      + E+ G AI   + 
Sbjct: 21  HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNH 80

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL- 132
           A  +DP+    +     ++        AL   +      P          + +  +  L 
Sbjct: 81  ARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLN 140

Query: 133 KFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA 166
              E         +    ++ + ++E+ P  +  
Sbjct: 141 VQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQL 174

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 89.7 bits (223), Expect = 4e-20
 Identities = 19/116 (16%), Positives = 46/116 (39%)

Query: 3   NMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE 62
           ++  +         +++         +Y +   L   A+E+N  +A  +A+    +    
Sbjct: 127 SVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSN 186

Query: 63  EYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
            Y SA  +  +A+E+ P   + + + GA      + +EAL  + +   ++P     
Sbjct: 187 NYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRV 242

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 86.6 bits (215), Expect = 5e-19
 Identities = 16/91 (17%), Positives = 32/91 (35%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
             Y  A     +A+EL   +A  +               A+   ++A++I+P Y +  Y 
Sbjct: 186 NNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYN 245

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
              +Y  M ++  A K   +   +       
Sbjct: 246 MAVSYSNMSQYDLAAKQLVRAIYMQVGGTTP 276

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 70.8 bits (174), Expect = 9e-14
 Identities = 12/90 (13%), Positives = 18/90 (20%)

Query: 29  KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88
              Q    Y                   +  KL     A        +  P   + +   
Sbjct: 2   HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61

Query: 89  GAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
           G       K   A+      + L P D   
Sbjct: 62  GLTQAENEKDGLAIIALNHARMLDPKDIAV 91

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 13/92 (14%), Positives = 31/92 (33%), Gaps = 12/92 (13%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
            +  +A+D Y++A+++N        N A +++ + +Y  A +   +AI +          
Sbjct: 220 NRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGE 279

Query: 88  R------------GAAYLAMGKFKEALKDFQQ 107
                              M +       + Q
Sbjct: 280 ASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 89.8 bits (224), Expect = 4e-22
 Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 2/90 (2%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--DPRYPKGY 85
             Y+++IDL+ +AI+L+ + + Y+  +  A   LE Y  A+   +  I +  D      +
Sbjct: 20  GNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVW 79

Query: 86  YRRGAAYLAMGKFKEALKDFQQVKKLSPND 115
             +  A   +   +   +  +   KL  + 
Sbjct: 80  AAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 76.3 bits (189), Expect = 2e-17
 Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 28/129 (21%)

Query: 43  LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL 102
           +  QN   Y            Y  +I    KAI++DP   K +  +G A   + +++EA+
Sbjct: 1   MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60

Query: 103 KDFQQVKKLSPNDPDAAQKVKECE------KAVKKL-KFEEAIAVPESERHSVADSIDY- 154
             +  V  +  ++ +        +       A++ +   E                    
Sbjct: 61  DCYNYVINVIEDEYNK-------DVWAAKADALRYIEGKEVEAE-------------IAE 100

Query: 155 QSIEVEPQY 163
              ++E  +
Sbjct: 101 ARAKLEHHH 109

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 88.5 bits (220), Expect = 1e-21
 Identities = 18/116 (15%), Positives = 41/116 (35%), Gaps = 3/116 (2%)

Query: 31  SQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90
               +     +   + N +        + + E++ +A+     A++ DP Y   +   G 
Sbjct: 2   QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61

Query: 91  AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERH 146
                G    A + ++     + +  D  Q VKE +  +++L      A+     H
Sbjct: 62  TLQGQGDRAGARQAWESGLAAAQSRGD-QQVVKELQVFLRRL--AREDALEHHHHH 114

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 88.6 bits (221), Expect = 2e-21
 Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 14/118 (11%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
             Y +AI+ Y +A+EL+ ++A  + N   A+ K  +Y  AI+   KA+E+DPR  + +Y 
Sbjct: 15  GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN 74

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA------AQKVKECEKAVKKLKFEEAIA 139
            G AY   G + EA++ +Q+  +L P   +A      A   +          ++EAI 
Sbjct: 75  LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG--------DYDEAIE 124

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 84.7 bits (211), Expect = 4e-20
 Identities = 30/87 (34%), Positives = 51/87 (58%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
             Y +AI+ Y +A+EL+ ++A  + N   A+ K  +Y  AI+   KA+E+DPR  + +Y 
Sbjct: 49  GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN 108

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPN 114
            G AY   G + EA++ +Q+  +L P 
Sbjct: 109 LGNAYYKQGDYDEAIEYYQKALELDPR 135

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 67.4 bits (166), Expect = 6e-14
 Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 28/126 (22%)

Query: 48  AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQ 107
           A  + N   A+ K  +Y  AI+   KA+E+DPR  + +Y  G AY   G + EA++ +Q+
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60

Query: 108 VKKLSPNDPDA------AQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDY-QSIEVE 160
             +L P   +A      A   +          ++EAI               Y +++E++
Sbjct: 61  ALELDPRSAEAWYNLGNAYYKQG--------DYDEAIE-------------YYQKALELD 99

Query: 161 PQYSGA 166
           P+ + A
Sbjct: 100 PRSAEA 105

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 93.6 bits (233), Expect = 3e-21
 Identities = 15/174 (8%), Positives = 47/174 (27%), Gaps = 27/174 (15%)

Query: 7   ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGS 66
           E + +    +         +      A+ L+  A++ + ++   +        + E+   
Sbjct: 57  EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 116

Query: 67  AIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126
           AI    + +E+ P           ++      ++A +  +   + +P         +E  
Sbjct: 117 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGA 176

Query: 127 KA-------------VKKLKFEEAIAVPESERHSVADSIDY-QSIEVEPQYSGA 166
                          +    F E                 +  ++ ++P     
Sbjct: 177 GGAGLGPSKRILGSLLSDSLFLEVKE-------------LFLAAVRLDPTSIDP 217

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 83.9 bits (208), Expect = 6e-18
 Identities = 18/122 (14%), Positives = 47/122 (38%), Gaps = 9/122 (7%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
            +Y +A+D ++ A+ +   + + +           +   A+    +A+E+ P Y +  Y 
Sbjct: 231 GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 290

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK--------AVKKL-KFEEAI 138
            G + + +G  +EA++ F +   +         +     +        A+  L + +   
Sbjct: 291 LGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350

Query: 139 AV 140
           A 
Sbjct: 351 AA 352

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 82.4 bits (204), Expect = 2e-17
 Identities = 14/101 (13%), Positives = 36/101 (35%), Gaps = 2/101 (1%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQN--AVYYANRAFAHTKLEEYGSAIQDASKAIEI 77
           +         + +  +L+  A+ L+  +                 EY  A+   + A+ +
Sbjct: 187 ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 246

Query: 78  DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
            P     + + GA      + +EA+  +++  +L P    +
Sbjct: 247 RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS 287

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 11/90 (12%)

Query: 29  KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88
           +  +A+  Y +A+EL         N   +   L  +  A++   +A+ +  +        
Sbjct: 266 QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG 325

Query: 89  GA-----------AYLAMGKFKEALKDFQQ 107
           GA           A   +G+         +
Sbjct: 326 GAMSENIWSTLRLALSMLGQSDAYGAADAR 355

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 20/156 (12%), Positives = 38/156 (24%), Gaps = 50/156 (32%)

Query: 37  YSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR--------- 87
           + +A      +  ++        +LEE      +A   +          Y          
Sbjct: 3   FERAKSAIESDVDFWDK---LQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEEN 59

Query: 88  ----------RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA------AQKVKECEKAVKK 131
                      G   L  G    A+  F+   +  P   +A       Q   E       
Sbjct: 60  PLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE------- 112

Query: 132 LKFEEAIAVPESERHSVADSIDY-QSIEVEPQYSGA 166
            +   AI+                + +E++P    A
Sbjct: 113 -QELLAIS-------------ALRRCLELKPDNQTA 134

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 91.2 bits (227), Expect = 1e-20
 Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 9/118 (7%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
            K   A    S+A  L       +     +     E+  A+     A ++          
Sbjct: 105 HKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLY 164

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA-------AQKVKECEKAVKKLKFEEAI 138
            G  Y      K A + F Q   ++P DP         A +  E + A K   F +A+
Sbjct: 165 IGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEK--WFLDAL 220

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 88.1 bits (219), Expect = 1e-19
 Identities = 24/129 (18%), Positives = 45/129 (34%), Gaps = 11/129 (8%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQ---------NAVYYANRAFAHTKLEEYGSAIQD 70
           +   AF+  ++  A   +  A+E                   N      KL++Y  A+  
Sbjct: 199 VGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258

Query: 71  ASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130
             +A+ + P+    Y   G  +  MG F+ A+  F     L  +D  +   +  C +   
Sbjct: 259 HRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE--M 316

Query: 131 KLKFEEAIA 139
            +   EA  
Sbjct: 317 YIGDSEAYI 325

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 86.2 bits (214), Expect = 7e-19
 Identities = 27/156 (17%), Positives = 50/156 (32%), Gaps = 21/156 (13%)

Query: 19  ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID 78
           A  +      ++ QA+  Y  A +L     +        +        A +  S+A+ I 
Sbjct: 130 AYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA 189

Query: 79  PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE------KAVKKL 132
           P  P   +  G      G++K A K F    +      +     K            +KL
Sbjct: 190 PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249

Query: 133 -KFEEAIAVPESERHSVADSIDY-QSIEVEPQYSGA 166
            K+ EA+               + Q++ + PQ +  
Sbjct: 250 KKYAEALD-------------YHRQALVLIPQNAST 272

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 77.3 bits (191), Expect = 7e-16
 Identities = 17/106 (16%), Positives = 37/106 (34%), Gaps = 1/106 (0%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
            + + +LA   +    +     L S  +E +  +A           +L +       + K
Sbjct: 22  LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHK 81

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGK-FKEALKDFQQVKKLSPNDPDA 118
            +++ P  P  ++  G  YL +G   + A +   +   L      A
Sbjct: 82  LVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPA 127

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 76.9 bits (190), Expect = 9e-16
 Identities = 21/104 (20%), Positives = 39/104 (37%)

Query: 2   PNMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL 61
             +  E +       L  L +   + KKY++A+D + QA+ L  QNA  Y+   + H+ +
Sbjct: 224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLM 283

Query: 62  EEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDF 105
             + +A+     A+ +           G          EA    
Sbjct: 284 GNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGA 327

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 76.9 bits (190), Expect = 9e-16
 Identities = 15/107 (14%), Positives = 35/107 (32%), Gaps = 1/107 (0%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL-EEYGSAIQDA 71
            A  L           K ++   L  + ++L   N V +      +  +  +   A +  
Sbjct: 55  HASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYL 114

Query: 72  SKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
           SKA  ++  Y   +   G ++    +  +A+  +    +L       
Sbjct: 115 SKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLP 161

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 12/83 (14%), Positives = 31/83 (37%)

Query: 36  LYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM 95
           +  ++++   +N     + A  H    ++    +  S  +E DP +           + +
Sbjct: 10  VIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVEL 69

Query: 96  GKFKEALKDFQQVKKLSPNDPDA 118
            K  E      ++  L P++P +
Sbjct: 70  NKANELFYLSHKLVDLYPSNPVS 92

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 90.9 bits (226), Expect = 2e-20
 Identities = 16/147 (10%), Positives = 42/147 (28%), Gaps = 4/147 (2%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP 79
              +  +       I     AI  +  +A  +        + E   +AI    + +E+ P
Sbjct: 71  EGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP 130

Query: 80  RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIA 139
              K       +Y      ++A +  +   K +P      +  K      +++   ++  
Sbjct: 131 NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRM--SKSPV 188

Query: 140 VPESERHSVADSIDYQSIEVEPQYSGA 166
             +S        +  ++          
Sbjct: 189 --DSSVLEGVKELYLEAAHQNGDMIDP 213

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 85.9 bits (213), Expect = 1e-18
 Identities = 23/136 (16%), Positives = 51/136 (37%), Gaps = 20/136 (14%)

Query: 3   NMETENSSVSRAEELKALANEAFRAK--------------------KYSQAIDLYSQAIE 42
            M       S  E +K L  EA                        ++++AID ++ A+ 
Sbjct: 182 RMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALT 241

Query: 43  LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL 102
           +  ++   +          +    A++  ++A+EI P + +  Y  G + + +G ++EA+
Sbjct: 242 VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301

Query: 103 KDFQQVKKLSPNDPDA 118
            +F     L     + 
Sbjct: 302 SNFLTALSLQRKSRNQ 317

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 81.3 bits (201), Expect = 5e-17
 Identities = 15/106 (14%), Positives = 36/106 (33%), Gaps = 2/106 (1%)

Query: 15  EELKALANEAFRAKKYSQAIDLYSQAIELN--SQNAVYYANRAFAHTKLEEYGSAIQDAS 72
              + ++     +       +LY +A   N    +               E+  AI   +
Sbjct: 178 GLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFN 237

Query: 73  KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
            A+ + P     + R GA      + +EA++ + +  ++ P    +
Sbjct: 238 AALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRS 283

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 78.6 bits (194), Expect = 3e-16
 Identities = 28/185 (15%), Positives = 53/185 (28%), Gaps = 21/185 (11%)

Query: 2   PNMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL 61
             M+ E   ++R   + +   EA      S +   Y    E   ++            K 
Sbjct: 20  DKMQAEWEEMARRNWI-SENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKE 78

Query: 62  EEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA--- 118
            +    I     AI  DP   + +   G         + A+   Q+  +L PN+  A   
Sbjct: 79  GDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMA 138

Query: 119 -----------AQKVKECEKAVK-KLKFEEA-----IAVPESERHSVADSIDYQSIEVEP 161
                          +  +  +K   K++        +   + R S +         V+ 
Sbjct: 139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKE 198

Query: 162 QYSGA 166
            Y  A
Sbjct: 199 LYLEA 203

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 68.5 bits (168), Expect = 8e-13
 Identities = 18/155 (11%), Positives = 36/155 (23%), Gaps = 36/155 (23%)

Query: 27  AKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID 78
           A ++ +A        E                + +            ++ +      E  
Sbjct: 2   AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61

Query: 79  PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA------AQKVKECEKAVKKL 132
            +   G +  G   L  G     +   +      P D +A       Q   E        
Sbjct: 62  FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENE-------- 113

Query: 133 KFEEAIAVPESERHSVADSIDY-QSIEVEPQYSGA 166
             + AI                 + +E++P    A
Sbjct: 114 NEQAAIV-------------ALQRCLELQPNNLKA 135

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 59.7 bits (145), Expect = 5e-10
 Identities = 15/99 (15%), Positives = 33/99 (33%), Gaps = 5/99 (5%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
            +  +A++ Y++A+E+         N   +   L  Y  A+ +   A+ +  +       
Sbjct: 261 DRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQV 320

Query: 88  RGAAY--LAMGKFKEALKDFQQ---VKKLSPNDPDAAQK 121
              A         + AL    Q    +  +  D D   +
Sbjct: 321 PHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLR 359

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 85.1 bits (212), Expect = 2e-20
 Identities = 32/91 (35%), Positives = 53/91 (58%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
             Y +AI+ Y +A+EL+  NA  + N   A+ K  +Y  AI+   KA+E+DP   + +Y 
Sbjct: 23  GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN 82

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
            G AY   G + EA++ +Q+  +L PN+ +A
Sbjct: 83  LGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 67.0 bits (165), Expect = 7e-14
 Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 29/132 (21%)

Query: 43  LNSQN-AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEA 101
           ++  N A  + N   A+ K  +Y  AI+   KA+E+DP   + +Y  G AY   G + EA
Sbjct: 3   MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62

Query: 102 LKDFQQVKKLSPNDPDA------AQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDY- 154
           ++ +Q+  +L PN+ +A      A   +          ++EAI               Y 
Sbjct: 63  IEYYQKALELDPNNAEAWYNLGNAYYKQG--------DYDEAIE-------------YYQ 101

Query: 155 QSIEVEPQYSGA 166
           +++E++P  + A
Sbjct: 102 KALELDPNNAEA 113

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 67.0 bits (165), Expect = 8e-14
 Identities = 23/69 (33%), Positives = 35/69 (50%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
             Y +AI+ Y +A+EL+  NA  + N   A+ K  +Y  AI+   KA+E+DP   +    
Sbjct: 57  GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 116

Query: 88  RGAAYLAMG 96
            G A    G
Sbjct: 117 LGNAKQKQG 125

>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle, hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A Length = 342

 Score = 90.6 bits (224), Expect = 3e-20
 Identities = 40/258 (15%), Positives = 80/258 (31%), Gaps = 42/258 (16%)

Query: 201 LQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFN---- 256
           L   ++   +  ++       K      DVHGQ+  LL + +   +   +  + F     
Sbjct: 50  LPETKLSSEIKQIMPDTYLGIKKVVALSDVHGQYDVLLTLLKKQKIIDSDGNWAFGEGHM 109

Query: 257 ---GDFVDRGSFSVEVILTLFAFKCMCPSA---IYLSRGNHESKSM-------NKIYGFE 303
              GD  DRG    EV+  ++        A   ++L  GNHE   +       ++ Y   
Sbjct: 110 VMTGDIFDRGHQVNEVLWFMYQLDQQARDAGGMVHLLMGNHEQMVLGGDLRYVHQRYDIA 169

Query: 304 GEVRSKLSETFVELFAEVFCCL---PLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFC 360
             + ++          E+   L        +N  ++ +HGG+ S    +   +   +   
Sbjct: 170 TTLINRPYNKLYSADTEIGQWLRSKNTIIKINDVLY-MHGGISSEWISRELTLDKANALY 228

Query: 361 EPPEEGLMCELLWSDPQPLPGRGPS--------------------KRGVGLSFVVRSHEV 400
               +     L   D       G                       +   ++ +V  H  
Sbjct: 229 RANVDASKKSLKADDLLNFLFFGNGPTWYRGYFSETFTEAELDTILQHFNVNHIVVGHTS 288

Query: 401 KDEGYEIEHDGKLITVFS 418
           ++    +    K+I V S
Sbjct: 289 QERVLGL-FHNKVIAVDS 305

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 84.5 bits (210), Expect = 5e-19
 Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 1/105 (0%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
               +   +         QA+ +   A  +N + A  +  R   +  L E   A     +
Sbjct: 84  VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQ 143

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
           A+ ++   P+        YL+MG+  EAL  + +  + +P D D 
Sbjct: 144 ALALED-TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDL 187

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 84.1 bits (209), Expect = 6e-19
 Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 11/110 (10%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP 79
           L  + +   +Y  A+ L+ +A++ N Q+       A    KL     A+++    +   P
Sbjct: 11  LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP 70

Query: 80  RYPKGYYRRGAAYLAM-----------GKFKEALKDFQQVKKLSPNDPDA 118
           RY  GY     AY+A+           G  ++AL   +  ++++P     
Sbjct: 71  RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPL 120

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 78.0 bits (193), Expect = 7e-17
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 1/87 (1%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
            +  +A     QA+ L        +  A  +  +     A+   +KA+E  P+      R
Sbjct: 132 GERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVR 190

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPN 114
             +A L  GK +EA +          +
Sbjct: 191 YASALLLKGKAEEAARAAALEHHHHHH 217

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 76.8 bits (190), Expect = 2e-16
 Identities = 24/158 (15%), Positives = 48/158 (30%), Gaps = 40/158 (25%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGS-----------AIQDASKAIE 76
              + A++     +    +    Y   + A+  L                A+     A  
Sbjct: 53  GLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER 112

Query: 77  IDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA------AQKVKECEKAVK 130
           ++PRY   + +RG  Y  +G+  +A    +Q   L    P+                   
Sbjct: 113 VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT-PEIRSALAELYLSMG------ 165

Query: 131 KLKFEEAIAVPESERHSVADSIDY-QSIEVEPQYSGAR 167
             + +EA+A              Y +++E  P+    R
Sbjct: 166 --RLDEALA-------------QYAKALEQAPKDLDLR 188

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 70.6 bits (174), Expect = 2e-14
 Identities = 21/136 (15%), Positives = 46/136 (33%), Gaps = 26/136 (19%)

Query: 41  IELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKE 100
           ++   QN             L  Y +A+    +A++ +P+ P+  Y      L +G    
Sbjct: 1   MQTAEQN---PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNP 57

Query: 101 ALKDFQQVKKLSPNDPDA---------AQKVKECEKAVKKLKFEEAIAVPESERHSVADS 151
           AL++ + +   +P              A   +  ++   K   E+A++            
Sbjct: 58  ALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALS------------ 105

Query: 152 IDY-QSIEVEPQYSGA 166
                +  V P+Y+  
Sbjct: 106 -VLKDAERVNPRYAPL 120

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 85.1 bits (210), Expect = 5e-18
 Identities = 15/133 (11%), Positives = 39/133 (29%), Gaps = 9/133 (6%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYG-SAIQDAS 72
            E+      +    ++  + +    + +      A     +  A     +Y   A    S
Sbjct: 70  VEDAGRKQQDV--QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLS 127

Query: 73  KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD------AAQKVKECE 126
           KA++++P   + + + G  Y   G    A   F        N           ++++   
Sbjct: 128 KAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDS 187

Query: 127 KAVKKLKFEEAIA 139
                    +++ 
Sbjct: 188 GDEHSRHVMDSVR 200

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 77.7 bits (191), Expect = 1e-15
 Identities = 18/132 (13%), Positives = 44/132 (33%), Gaps = 13/132 (9%)

Query: 19  ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHT-----------KLEEYGSA 67
              +    ++    ++     A++++  +   +     A+              ++  SA
Sbjct: 184 QTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSA 243

Query: 68  IQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127
              A K        P  +  R   +     + EAL+ F Q   L P  P+  Q+ ++  +
Sbjct: 244 YAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLE 303

Query: 128 AVKKLKFEEAIA 139
            + +L     + 
Sbjct: 304 FLSRL--TSLLE 313

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 76.6 bits (188), Expect = 3e-15
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 3/97 (3%)

Query: 17  LKALANEAFRAKKYSQAIDLYSQAIELNSQ---NAVYYANRAFAHTKLEEYGSAIQDASK 73
           L    N     K   QA+  Y+QA +++ +   N   + NRA  H   E YG A++  S+
Sbjct: 224 LSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQ 283

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKK 110
           A  +DP +P+   R       + +    L+   + K 
Sbjct: 284 AAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKP 320

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 69.3 bits (169), Expect = 6e-13
 Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 18/110 (16%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGS---------AIQDASKAIEID 78
              + A   +S A+           N +    +L+             +++ A  A+++D
Sbjct: 151 GDVTSAHTCFSGALTHCKNKVSLQ-NLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD 209

Query: 79  PRYPKGYYRRGAAYLA--------MGKFKEALKDFQQVKKLSPNDPDAAQ 120
               + +Y  G AYL+            ++AL  + Q +K+         
Sbjct: 210 VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPD 259

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 85.3 bits (211), Expect = 5e-18
 Identities = 15/107 (14%), Positives = 32/107 (29%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
                 LA+        +       + + L+  +    A         + +  A     +
Sbjct: 23  FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120
           A +  P +P      G A    G+ + A   + +  +L P +P    
Sbjct: 83  ASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITA 129

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 74.9 bits (184), Expect = 1e-14
 Identities = 15/89 (16%), Positives = 30/89 (33%)

Query: 30  YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89
             + +     A+    Q+ V +   A A   + +  +      + + + P +P+   R G
Sbjct: 5   GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLG 64

Query: 90  AAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
                  +  EA    QQ    +P  P  
Sbjct: 65  RVRWTQQRHAEAAVLLQQASDAAPEHPGI 93

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 58.3 bits (141), Expect = 3e-09
 Identities = 14/107 (13%), Positives = 36/107 (33%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
            E +  L    +  +++++A  L  QA +   ++         A     +  +A    ++
Sbjct: 57  PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTR 116

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120
           A ++ P  P    +       +  ++       QV+        A +
Sbjct: 117 AHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVE 163

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 55.2 bits (133), Expect = 2e-08
 Identities = 12/79 (15%), Positives = 24/79 (30%), Gaps = 5/79 (6%)

Query: 67  AIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126
            +     A+   P+    +     A L MG         Q+   L P  P+A  ++    
Sbjct: 8   ELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVR 67

Query: 127 KAVKKLK-----FEEAIAV 140
              ++        ++A   
Sbjct: 68  WTQQRHAEAAVLLQQASDA 86

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 85.2 bits (210), Expect = 6e-18
 Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 2/126 (1%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           A+ L  LAN         +A+ LY +A+E+  + A  ++N A    +  +   A+    +
Sbjct: 9   ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 68

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
           AI I P +   Y   G     M   + AL+ + +  +++P   DA   +    K    + 
Sbjct: 69  AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNI- 127

Query: 134 FEEAIA 139
             EAIA
Sbjct: 128 -PEAIA 132

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 84.5 bits (208), Expect = 1e-17
 Identities = 49/353 (13%), Positives = 106/353 (30%), Gaps = 38/353 (10%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP 79
           LA+   +  K  +A+  Y +AI ++   A  Y+N      ++++   A+Q  ++AI+I+P
Sbjct: 49  LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 108

Query: 80  RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIA 139
            +   +    + +   G   EA+  ++   KL P+ PDA   +  C + V      +   
Sbjct: 109 AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDE-- 166

Query: 140 VPESERHSVADSIDY-QSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQ 198
                           + + +             +              +K + +R+   
Sbjct: 167 -------------RMKKLVSIVADQLEKNRLP-SVHPHHSMLYPLSHGFRKAIAERHGNL 212

Query: 199 IVLQTREMLRALPSLVDIDIPDGKHFTV-----CGDVHGQFYDLLNIFELNGLPSEENP- 252
            + +   + +                 V         H   + + +I  ++     E   
Sbjct: 213 CLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFC 272

Query: 253 YLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSE 312
           Y  + D                         I LS+     K+ ++I+     +   ++ 
Sbjct: 273 YALSPDDGTNFR---------VKVMAEANHFIDLSQIPCNGKAADRIHQDGIHILVNMNG 323

Query: 313 TFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEE 365
                  E+F   P           +  G     G    D    D+   P E 
Sbjct: 324 YTKGARNELFALRPAPI------QAMWLGYPGTSGALFMDYIITDQETSPAEV 370

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 68.3 bits (166), Expect = 2e-12
 Identities = 17/105 (16%), Positives = 41/105 (39%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           A+    + N     +    A+  Y++AI++N   A  ++N A  H        AI     
Sbjct: 77  ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRT 136

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
           A+++ P +P  Y         +  + +  +  +++  +  +  + 
Sbjct: 137 ALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEK 181

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 56.0 bits (134), Expect = 1e-08
 Identities = 17/73 (23%), Positives = 32/73 (43%)

Query: 46  QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDF 105
            +A    N A    +      A++   KA+E+ P +   +    +     GK +EAL  +
Sbjct: 7   THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 66

Query: 106 QQVKKLSPNDPDA 118
           ++  ++SP   DA
Sbjct: 67  KEAIRISPTFADA 79

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 40.9 bits (95), Expect = 7e-04
 Identities = 16/111 (14%), Positives = 40/111 (36%), Gaps = 24/111 (21%)

Query: 78  DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA-------QKVKECEKAVK 130
            P +              G  +EA++ +++  ++ P    A        Q+  + ++A+ 
Sbjct: 5   CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 64

Query: 131 KLKFEEAIAVP---------------ESERHSVADSIDYQSIEVEPQYSGA 166
              ++EAI +                E +    A     ++I++ P ++ A
Sbjct: 65  --HYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADA 113

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 80.8 bits (200), Expect = 1e-17
 Identities = 13/127 (10%), Positives = 38/127 (29%), Gaps = 17/127 (13%)

Query: 28  KKYSQAIDLYSQAIE--LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85
           K+Y +A     +A +  L  + +  + N      ++++   A +   K++ ++   P   
Sbjct: 119 KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVA 178

Query: 86  YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA-------------AQKVKECEKAVKKL 132
                      ++  A + +    +    +  +                       +K+L
Sbjct: 179 LEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238

Query: 133 K--FEEA 137
                E 
Sbjct: 239 YPGSLEY 245

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 80.4 bits (199), Expect = 2e-17
 Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 11/129 (8%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP 79
           L     +     QA     +A+E++  +A  +A  A       E   A ++  KA+  D 
Sbjct: 43  LGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS 102

Query: 80  RYPKGYYRRGAAYLAMGKFKEALKDFQQV--KKLSPNDPDA-------AQKVKECEKAVK 130
           R  +     G       +++EA +   +     L P            + ++K+  +A +
Sbjct: 103 RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE 162

Query: 131 KLKFEEAIA 139
              FE+++ 
Sbjct: 163 --YFEKSLR 169

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 75.8 bits (187), Expect = 8e-16
 Identities = 19/109 (17%), Positives = 36/109 (33%)

Query: 12  SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDA 71
            R+   + L   + + KK +QA + + +++ LN          A    K  EY  A Q  
Sbjct: 139 ERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYY 198

Query: 72  SKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120
               +   +  +                 A     Q+K+L P   +  +
Sbjct: 199 DLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 74.6 bits (184), Expect = 2e-15
 Identities = 15/127 (11%), Positives = 36/127 (28%), Gaps = 9/127 (7%)

Query: 22  NEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY 81
           +     +          +  +   +    Y      + +      A     KA+EIDP  
Sbjct: 11  SSGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS 70

Query: 82  PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA-------QKVKECEKAVKKLKF 134
              +      +    + K A +++++       +            + K  E+A +  + 
Sbjct: 71  ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQ--RL 128

Query: 135 EEAIAVP 141
            EA    
Sbjct: 129 LEASQDT 135

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 72.3 bits (178), Expect = 1e-14
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 2/102 (1%)

Query: 19  ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE-- 76
           ALA       +   A + Y +A+  +S+NA    N      + + Y  A Q   +A +  
Sbjct: 76  ALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDT 135

Query: 77  IDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
           + P   + +   G   L M K  +A + F++  +L+ N P  
Sbjct: 136 LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSV 177

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 75.6 bits (186), Expect = 6e-17
 Identities = 12/104 (11%), Positives = 29/104 (27%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
            E          +    ++A   +    +   +    + +      + E+ G AI   + 
Sbjct: 17  HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNH 76

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117
           A  +DP+    +     ++        AL   +      P    
Sbjct: 77  ARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 55.5 bits (134), Expect = 8e-10
 Identities = 10/66 (15%), Positives = 17/66 (25%)

Query: 53  NRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112
               +  KL     A        + +P   + +   G       K   A+      + L 
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81

Query: 113 PNDPDA 118
           P D   
Sbjct: 82  PKDIAV 87

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 76.8 bits (189), Expect = 9e-17
 Identities = 22/120 (18%), Positives = 41/120 (34%), Gaps = 3/120 (2%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGS---AIQDASKAIE 76
           L         YS ++  Y QA++L  +NA  YA  A                    KA+ 
Sbjct: 50  LGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALA 109

Query: 77  IDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEE 136
           +D           +       + +A++ +Q+V  L+    +  Q V+    A    +  +
Sbjct: 110 LDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINMAKLLQRRSD 169

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 63.0 bits (153), Expect = 6e-12
 Identities = 17/154 (11%), Positives = 50/154 (32%), Gaps = 14/154 (9%)

Query: 12  SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDA 71
           +  +  +   ++    +     +      I  N QN+  +A     +    +Y +++   
Sbjct: 8   AEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAY 67

Query: 72  SKAIEIDPRYPKGYYRRGAAYLAMGK---FKEALKDFQQVKKLSPNDPDA-------AQK 121
            +A+++     + Y                 +      +   L  N+  A       A  
Sbjct: 68  RQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFM 127

Query: 122 VKECEKAVKKLKFEEAIAV--PESERHSVADSID 153
                +A++   +++ + +  P   R  + +SI+
Sbjct: 128 QANYAQAIE--LWQKVMDLNSPRINRTQLVESIN 159

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 78.1 bits (193), Expect = 1e-16
 Identities = 24/137 (17%), Positives = 48/137 (35%), Gaps = 12/137 (8%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDAS 72
            +     LA E  R + Y QA      A++ + +N + +  RA  +  L+    A +   
Sbjct: 7   VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFR 66

Query: 73  KAIEIDPRYPKGYYRRGAA-YLAMGKFKEALKDFQQV--KKLSPNDPDA-------AQKV 122
           +A+ I P   +     G      + +  E++  F +       P    A       + K 
Sbjct: 67  QALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQ 126

Query: 123 KECEKAVKKLKFEEAIA 139
            +   A      + ++A
Sbjct: 127 GQFGLAEA--YLKRSLA 141

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 75.0 bits (185), Expect = 1e-15
 Identities = 11/96 (11%), Positives = 35/96 (36%), Gaps = 2/96 (2%)

Query: 26  RAKKYSQAIDLYSQAIE--LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK 83
           R  + ++++  + +A+         +   N+     K  ++G A     +++   P++P 
Sbjct: 89  RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPP 148

Query: 84  GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119
            +       +  G+  +A   F++ +          
Sbjct: 149 AFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADD 184

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 70.0 bits (172), Expect = 5e-14
 Identities = 19/116 (16%), Positives = 45/116 (38%), Gaps = 10/116 (8%)

Query: 42  ELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEA 101
           E  +Q +      A  + + ++Y  A      A++ DP+    +  R   Y  +    +A
Sbjct: 2   EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61

Query: 102 LKDFQQVKKLSPNDPDA--------AQKVKECEKAVKKLKFEEAIAVPESERHSVA 149
            + F+Q   + P+  +           ++    +++    F++A+A P      +A
Sbjct: 62  QESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMA--YFDKALADPTYPTPYIA 115

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 64.2 bits (157), Expect = 5e-12
 Identities = 10/108 (9%), Positives = 25/108 (23%), Gaps = 2/108 (1%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDAS 72
                      + +  ++  A     +++    Q    +   A       + G A     
Sbjct: 112 PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFK 171

Query: 73  KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120
           K                  +        A   ++   +L  N P + +
Sbjct: 172 KYQSRVEVLQADDL--LLGWKIAKALGNAQAAYEYEAQLQANFPYSEE 217

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 72.1 bits (177), Expect = 9e-16
 Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 29  KYSQAIDLYSQAIELNSQNAVY---YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85
             +QA+  Y +AI    Q       Y         L EY  A    +  ++  P +    
Sbjct: 5   LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64

Query: 86  YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117
                    +G++++ ++   ++   + +D  
Sbjct: 65  VFYAMVLYNLGRYEQGVELLLKIIAETSDDET 96

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 50.1 bits (120), Expect = 5e-08
 Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 1/84 (1%)

Query: 12  SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDA 71
             AE    L +      +Y +A  + +  ++    +       A     L  Y   ++  
Sbjct: 25  DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELL 84

Query: 72  SKAIEIDPRYPK-GYYRRGAAYLA 94
            K I           Y++   + A
Sbjct: 85  LKIIAETSDDETIQSYKQAILFYA 108

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 47.0 bits (112), Expect = 7e-07
 Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 12/89 (13%)

Query: 61  LEEYGSAIQDASKAIEI---DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117
           L     A+    KAI          + Y   G+ +  +G++++A        K  PN   
Sbjct: 3   LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62

Query: 118 AA-------QKVKECEKAVKKLKFEEAIA 139
                      +   E+ V+     + IA
Sbjct: 63  LRVFYAMVLYNLGRYEQGVE--LLLKIIA 89

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 77.3 bits (190), Expect = 2e-15
 Identities = 21/136 (15%), Positives = 49/136 (36%), Gaps = 16/136 (11%)

Query: 18  KALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGS---AIQDASKA 74
           +          +  +A   + +A+E   +N  + +  A A  +L+ +     AI    +A
Sbjct: 142 EGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQA 201

Query: 75  IEIDPRYPKGYYRRGAAYLAM----GKFKEALKDFQQVKKLSPNDPDA-------AQKVK 123
           I ++P               M     +  E  K  ++  + +P   D         ++  
Sbjct: 202 IRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKD 261

Query: 124 ECEKAVKKLKFEEAIA 139
           E +KA++    ++A+ 
Sbjct: 262 EPDKAIE--LLKKALE 275

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 73.8 bits (181), Expect = 2e-14
 Identities = 30/188 (15%), Positives = 57/188 (30%), Gaps = 37/188 (19%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK------------- 60
            + L++ A    R  +  +AI+L  +A+E    NA  +      +               
Sbjct: 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM 306

Query: 61  ------LEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114
                 LE  G A+    KA E +    +      + +    +++EA   FQ+       
Sbjct: 307 YGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366

Query: 115 DPDAAQ-----------KVKECEKAVKKLKFEEAIAV-PESERH----SVADSIDYQSIE 158
                            ++K  +KA+    F E + +  +S            I    + 
Sbjct: 367 PVAKQLLHLRYGNFQLYQMKCEDKAIH--HFIEGVKINQKSREKEKMKDKLQKIAKMRLS 424

Query: 159 VEPQYSGA 166
                S A
Sbjct: 425 KNGADSEA 432

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 70.0 bits (171), Expect = 3e-13
 Identities = 17/119 (14%), Positives = 35/119 (29%), Gaps = 19/119 (15%)

Query: 19  ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID 78
            L       ++  +   L  +A+E          + A  + + +E   AI+   KA+E  
Sbjct: 218 KLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI 277

Query: 79  PRYPKGYYRRGAAYLAMGK-------------------FKEALKDFQQVKKLSPNDPDA 118
           P     + + G  Y A                         A+   ++  + + N    
Sbjct: 278 PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRV 336

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 61.9 bits (150), Expect = 2e-10
 Identities = 12/95 (12%), Positives = 36/95 (37%), Gaps = 10/95 (10%)

Query: 25  FRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG 84
           ++ K   +AI  + + +++N ++      +     KL++       A   +  +    + 
Sbjct: 383 YQMKCEDKAIHHFIEGVKINQKSR----EKEKMKDKLQKI------AKMRLSKNGADSEA 432

Query: 85  YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119
            +          K ++A +D ++  +     P A+
Sbjct: 433 LHVLAFLQELNEKMQQADEDSERGLESGSLIPSAS 467

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 58.0 bits (140), Expect = 2e-09
 Identities = 21/151 (13%), Positives = 43/151 (28%), Gaps = 29/151 (19%)

Query: 12  SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ---------NAVYYANRAFAHTKLE 62
            +A     LA       +   A++   +A EL  Q         + V + N A+ +  + 
Sbjct: 49  FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMG 108

Query: 63  EYGSAIQDASKAIEIDPRYPKG--------YYRRGAAYLAMGK--FKEALKDFQQVKKLS 112
                     K   +  ++               G   L  G    + A   F++  +  
Sbjct: 109 RLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK 168

Query: 113 PNDPDAA----------QKVKECEKAVKKLK 133
           P +P+                  + A+  L+
Sbjct: 169 PKNPEFTSGLAIASYRLDNWPPSQNAIDPLR 199

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 56.9 bits (137), Expect = 6e-09
 Identities = 17/137 (12%), Positives = 41/137 (29%), Gaps = 19/137 (13%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQ--------NAVYYANRAFAHTKL--EEYGSAIQ 69
            A   +   + S       +   +  +        +        +   K    +   A  
Sbjct: 100 YAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKV 159

Query: 70  DASKAIEIDPRYPKGYYRRGAAYLAMGKFK---EALKDFQQVKKLSPNDPDA----AQKV 122
              KA+E  P+ P+       A   +  +     A+   +Q  +L+P++       A K+
Sbjct: 160 CFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL 219

Query: 123 KECEKAVKKLKFEEAIA 139
            +  +  ++    E   
Sbjct: 220 HKMREEGEEE--GEGEK 234

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 48.8 bits (116), Expect = 2e-06
 Identities = 10/76 (13%), Positives = 24/76 (31%), Gaps = 3/76 (3%)

Query: 17  LKALA---NEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           ++ +        + K   +   +    +  N  ++      AF     E+   A +D+ +
Sbjct: 396 IEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSER 455

Query: 74  AIEIDPRYPKGYYRRG 89
            +E     P      G
Sbjct: 456 GLESGSLIPSASSWNG 471

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 48.4 bits (115), Expect = 3e-06
 Identities = 20/127 (15%), Positives = 35/127 (27%), Gaps = 19/127 (14%)

Query: 32  QAIDLYSQAIEL--NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI---------DPR 80
              D      E       A      A+      +  +A++   KA E+         + R
Sbjct: 33  DFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIR 92

Query: 81  YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE---CEKAVKKLK---- 133
               +      Y  MG+  +      +VK +        +       CE+   +LK    
Sbjct: 93  SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGN 152

Query: 134 -FEEAIA 139
             E A  
Sbjct: 153 QNERAKV 159

>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr protein phosphatase, ppase, manganese, sulfate, viral protein; 2.15A {Enterobacteria phage lambda} SCOP: d.159.1.3 Length = 221

 Score = 74.1 bits (182), Expect = 2e-15
 Identities = 38/211 (18%), Positives = 73/211 (34%), Gaps = 35/211 (16%)

Query: 215 DIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLF 274
            ID    ++  V GD+HG + +L+N  +  G  ++++  +  GD VDRG+ +VE +    
Sbjct: 6   KIDGSKYRNIWVVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECL---- 61

Query: 275 AFKCMCPSAIYLSRGNHESKSMNKIY------------GFEGEVRSKLSETFVELFAEVF 322
                 P    + RGNHE   ++ +             G          E   +  A   
Sbjct: 62  EL-ITFPWFRAV-RGNHEQMMIDGLSERGNVNHWLLNGGGWFFNLDYDKEILAKALAHKA 119

Query: 323 CCLPLAHVL---NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPL 379
             LPL   L   ++K  + H      +          +       +    +++W+  +  
Sbjct: 120 DELPLIIELVSKDKKYVICHADYPFDE---------YEFGKPVDHQ----QVIWNRERIS 166

Query: 380 -PGRGPSKRGVGLSFVVRSHEVKDEGYEIEH 409
               G  K   G    +  H    +  +  +
Sbjct: 167 NSQNGIVKEIKGADTFIFGHTPAVKPLKFAN 197

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 74.4 bits (182), Expect = 4e-15
 Identities = 19/118 (16%), Positives = 43/118 (36%), Gaps = 4/118 (3%)

Query: 18  KALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77
            A  + A   +K   A  ++ +  +  S   +    +A  H     + +A     +A++ 
Sbjct: 170 TAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229

Query: 78  DPRYPKGYYRRGAAYLAMGKFKEALKDF-QQVKKLSPNDP---DAAQKVKECEKAVKK 131
           D  +P+           +GK  E    +  Q+K    + P   +   K  + ++ V +
Sbjct: 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKENDFDRLVLQ 287

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 66.3 bits (161), Expect = 2e-12
 Identities = 12/111 (10%), Positives = 34/111 (30%), Gaps = 5/111 (4%)

Query: 13  RAEELKALANEA---FRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL--EEYGSA 67
           + + L+ +A       +  +   A     +  + +    +     A+       E+   A
Sbjct: 126 QGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDA 185

Query: 68  IQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
                +  +           + A ++A G+++ A    Q+        P+ 
Sbjct: 186 YYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 40.9 bits (95), Expect = 5e-04
 Identities = 12/133 (9%), Positives = 37/133 (27%), Gaps = 4/133 (3%)

Query: 24  AFRAKKYSQAIDLYSQAIELNSQNAVYYAN-RAFAHTKLEEYGSAIQDASKAIEIDPRYP 82
           AF    Y Q I+   +    + +  V        A+    +YG  + +   +   + +  
Sbjct: 9   AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAV 68

Query: 83  KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142
           + +        +  +    + +  +    S +  +    +            + A+    
Sbjct: 69  RMFAE---YLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLH 125

Query: 143 SERHSVADSIDYQ 155
                   ++  Q
Sbjct: 126 QGDSLECMAMTVQ 138

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 68.1 bits (167), Expect = 1e-14
 Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 1/88 (1%)

Query: 46  QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDF 105
           ++       A  H K +    A+    + +E DP Y   YY  G  Y  + +  +A+  +
Sbjct: 5   EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTY 64

Query: 106 QQVKKLSPNDPDAAQKVKECEKAVKKLK 133
            Q  +++  +    + + E + A  K +
Sbjct: 65  AQGIEVAREEGT-QKDLSELQDAKLKAE 91

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 59.2 bits (144), Expect = 3e-11
 Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 5/87 (5%)

Query: 19  ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID 78
           ALA E  +    S+A+ L+ + +E +      Y +    + +L+    AI   ++ IE+ 
Sbjct: 12  ALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71

Query: 79  PRYPKGYYRRGAAYLAMGKFKEALKDF 105
                           +   K   +  
Sbjct: 72  REEGTQK-----DLSELQDAKLKAEGL 93

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 9/70 (12%)

Query: 78  DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA-------AQKVKECEKAVK 130
           DP  P   Y     +L       AL  F+++ +  P+            +++   + A+ 
Sbjct: 3   DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62

Query: 131 KLKFEEAIAV 140
              + + I V
Sbjct: 63  --TYAQGIEV 70

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 69.9 bits (170), Expect = 2e-14
 Identities = 26/144 (18%), Positives = 49/144 (34%), Gaps = 23/144 (15%)

Query: 10  SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ------------NAVYYANRAFA 57
            V  A    + A     A +Y +A     +A+E++              +A  +A  A A
Sbjct: 7   EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEA 66

Query: 58  HTKLEEYGSAIQDASKAIEIDPR-----------YPKGYYRRGAAYLAMGKFKEALKDFQ 106
              L  +  A+  A KA+    R           +    Y R  A   +G+  EA+ +F+
Sbjct: 67  LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFK 126

Query: 107 QVKKLSPNDPDAAQKVKECEKAVK 130
           +V ++           +   +   
Sbjct: 127 KVVEMIEERKGETPGKERMMEVAI 150

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 69.3 bits (169), Expect = 4e-13
 Identities = 12/116 (10%), Positives = 33/116 (28%), Gaps = 4/116 (3%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
           K   + ++  +  IE   +N   + +R      L +    ++  +  +  D +    +  
Sbjct: 146 KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQH 205

Query: 88  RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA----AQKVKECEKAVKKLKFEEAIA 139
           R         +   L+   Q+ K    +          +        +   E  + 
Sbjct: 206 RQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQ 261

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 67.8 bits (165), Expect = 1e-12
 Identities = 14/119 (11%), Positives = 47/119 (39%), Gaps = 6/119 (5%)

Query: 26  RAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85
             +  SQ ++  +  +  +++N   + +R +   + + + + +Q   + ++ D R    +
Sbjct: 178 WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVW 237

Query: 86  YRRGAAYLAMGKF------KEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAI 138
            +R         +      +  ++   ++ KL P++  A   +K   +     K+   +
Sbjct: 238 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLL 296

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 55.5 bits (133), Expect = 1e-08
 Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 1/94 (1%)

Query: 26  RAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-EYGSAIQDASKAIEIDPRYPKG 84
           R ++  +A  L   AIELN+ N   +  R      L+ +    +   +  IE  P+  + 
Sbjct: 109 RDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 168

Query: 85  YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
           ++ R      +    + L+    +      +  A
Sbjct: 169 WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHA 202

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 47.8 bits (113), Expect = 3e-06
 Identities = 11/80 (13%), Positives = 25/80 (31%), Gaps = 1/80 (1%)

Query: 40  AIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGK-F 98
            I  + +    Y        + E    A +    AIE++      ++ R     ++ K  
Sbjct: 89  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148

Query: 99  KEALKDFQQVKKLSPNDPDA 118
            E +     + +  P +   
Sbjct: 149 HEEMNYITAIIEEQPKNYQV 168

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 63.6 bits (156), Expect = 5e-13
 Identities = 23/69 (33%), Positives = 35/69 (50%)

Query: 28 KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
            Y +AI+ Y +A+EL+  NA  + N   A+ K  +Y  AI+   KA+E+DP   +    
Sbjct: 23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 82

Query: 88 RGAAYLAMG 96
           G A    G
Sbjct: 83 LGNAKQKQG 91

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 62.8 bits (154), Expect = 9e-13
 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 43  LNSQN-AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEA 101
           ++  N A  + N   A+ K  +Y  AI+   KA+E+DP   + +Y  G AY   G + EA
Sbjct: 3   MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62

Query: 102 LKDFQQVKKLSPNDPDA 118
           ++ +Q+  +L PN+ +A
Sbjct: 63  IEYYQKALELDPNNAEA 79

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 63.1 bits (154), Expect = 9e-13
 Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 3/71 (4%)

Query: 20 LANEAFRAKKYSQAIDLYSQAIELNSQNA--VYYANRAFAHTKLEEYGSAIQDASKAIEI 77
             E         A+    + ++         YY     A+ KL ++  A+ +   AIE+
Sbjct: 6  TIKELINQGDIENALQALEEFLQTEPVGKDEAYY-LMGNAYRKLGDWQKALNNYQSAIEL 64

Query: 78 DPRYPKGYYRR 88
          +P  P    R+
Sbjct: 65 NPDSPALQARK 75

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 58.9 bits (143), Expect = 2e-11
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 16/86 (18%)

Query: 34  IDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR-YPKGYYRRGAAY 92
           +D      EL +Q              +E    A+Q   + ++ +P    + YY  G AY
Sbjct: 1   MDQLKTIKELINQG------------DIEN---ALQALEEFLQTEPVGKDEAYYLMGNAY 45

Query: 93  LAMGKFKEALKDFQQVKKLSPNDPDA 118
             +G +++AL ++Q   +L+P+ P  
Sbjct: 46  RKLGDWQKALNNYQSAIELNPDSPAL 71

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 65.5 bits (159), Expect = 7e-12
 Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 3/98 (3%)

Query: 21  ANEAFRAKKYSQAIDLYSQAIELNSQN--AVYYANRAFAHTKLEEYGSAIQDASKAIEID 78
           +      K+ +         + L   N  ++ Y  +A +     +   + Q  +  I+++
Sbjct: 248 SQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307

Query: 79  PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116
             +   Y   G  Y   G  +EA   +     L P   
Sbjct: 308 MSW-LNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 61.3 bits (148), Expect = 2e-10
 Identities = 12/116 (10%), Positives = 32/116 (27%), Gaps = 13/116 (11%)

Query: 12  SRAEELKALANEAFR---AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYG--- 65
                    A++       K  ++A +L  + ++ + +     A +A             
Sbjct: 194 GALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLD 253

Query: 66  -----SAIQDASKAIEID--PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114
                +   +    + +         Y  +  + L  GK  E+ +       L  +
Sbjct: 254 EKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS 309

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 52.0 bits (124), Expect = 1e-07
 Identities = 13/97 (13%), Positives = 27/97 (27%), Gaps = 2/97 (2%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           +   +  A  A    K  ++    +  I+L   + + Y      +        A      
Sbjct: 277 SIIYQIKAVSALVKGKTDESYQAINTGIDLE-MSWLNYVLLGKVYEMKGMNREAADAYLT 335

Query: 74  AIEIDPRYPKGYY-RRGAAYLAMGKFKEALKDFQQVK 109
           A  + P     Y+   G    ++      L  F   +
Sbjct: 336 AFNLRPGANTLYWIENGIFQTSVPYVVPYLDKFLASE 372

>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine tetraphosphatase, monomer, PSI- 2, protein structure initiative, nysgrc; 2.05A {Trypanosoma brucei} Length = 262

 Score = 60.9 bits (148), Expect = 1e-10
 Identities = 28/147 (19%), Positives = 51/147 (34%), Gaps = 18/147 (12%)

Query: 207 LRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFS 266
           ++   ++V +    G+   V GD+HG    L ++          +  +  GD V++G  S
Sbjct: 5   VQGYANVVTLPNVTGRVIIV-GDIHGCRAQLEDLLRAVSFKQGSDTLVAVGDLVNKGPDS 63

Query: 267 VEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEV----- 321
             V+            A  +  GNH++K +  +     +   K  +    L         
Sbjct: 64  FGVV----RL-LKRLGAYSV-LGNHDAKLLKLVKKLGKKECLKGRDAKSSLAPLAQSIPT 117

Query: 322 ----FC-CLPLAHVL-NQKVFVVHGGL 342
               +   LP    +    V V H GL
Sbjct: 118 DVETYLSQLPHIIRIPAHNVMVAHAGL 144

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 15/106 (14%), Positives = 37/106 (34%), Gaps = 10/106 (9%)

Query: 12  SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----AVYYANRAFAHTKLEEYGSA 67
           +   EL        ++      +  +  A+++ +++    +  Y+    A+  L +Y  A
Sbjct: 7   ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKA 66

Query: 68  IQDASKAIEI------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQ 107
           ++     + +           K     G     +G F EA+   Q+
Sbjct: 67  LEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 112

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 12/106 (11%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSA 67
                 L N      ++  A + Y + + L  Q       A    +    +T L++Y  A
Sbjct: 227 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 286

Query: 68  IQDASKAIEID------PRYPKGYYRRGAAYLAMGKFKEALKDFQQ 107
           I    K + I           +  +  G AY A+G   +A+   ++
Sbjct: 287 IDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 15/103 (14%), Positives = 36/103 (34%), Gaps = 18/103 (17%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIEL------NSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           L N  +    +  A+  + Q + +       +     Y+N   A+  L E+ +A +   K
Sbjct: 193 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252

Query: 74  AIEIDPRYPKGYYRR---------GAAYLAMGKFKEALKDFQQ 107
            + +     +   R          G  Y  +  +++A+    +
Sbjct: 253 TLLL---ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 23/151 (15%), Positives = 55/151 (36%), Gaps = 29/151 (19%)

Query: 28  KKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY 81
                A+D Y + + L +           + N    H  L  +  A+    + + I   +
Sbjct: 161 DALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 220

Query: 82  P------KGYYRRGAAYLAMGKFKEALKDFQQ---VKKLSPNDPDAAQ----------KV 122
                  + Y   G AY+ +G+F+ A + +++   + +   +    AQ           +
Sbjct: 221 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL 280

Query: 123 KECEKAVKKLKFEEAIAVPES--ERHSVADS 151
           ++ EKA+      + +A+ +   +R     +
Sbjct: 281 QDYEKAID--YHLKHLAIAQELNDRIGEGRA 309

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 21/148 (14%), Positives = 45/148 (30%), Gaps = 15/148 (10%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIEL------NSQNAVYYANRAFAHTKLEEYGSA 67
           +     L N  F    Y++A++ +   + L          A    N       L  +  A
Sbjct: 47  SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEA 106

Query: 68  IQDASKAIEIDPRYPKGYYRRG--AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125
           I    + ++I     +   + G   A   +G    A                  +     
Sbjct: 107 IVCCQRHLDI---SRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163

Query: 126 EKAVKKLKFEEAIAVPES--ERHSVADS 151
           + AV    +EE +++  +  +R +   +
Sbjct: 164 QAAVD--FYEENLSLVTALGDRAAQGRA 189

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 56.1 bits (136), Expect = 6e-09
 Identities = 15/106 (14%), Positives = 37/106 (34%), Gaps = 10/106 (9%)

Query: 12  SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----AVYYANRAFAHTKLEEYGSA 67
           +   EL        ++      +  +  A+++ +++    +  Y+    A+  L +Y  A
Sbjct: 3   ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKA 62

Query: 68  IQDASKAIEI------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQ 107
           ++     + +           K     G     +G F EA+   Q+
Sbjct: 63  LEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 108

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 12/106 (11%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSA 67
                 L N      ++  A + Y + + L  Q       A    +    +T L++Y  A
Sbjct: 223 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 282

Query: 68  IQDASKAIEID------PRYPKGYYRRGAAYLAMGKFKEALKDFQQ 107
           I    K + I           +  +  G AY A+G   +A+   ++
Sbjct: 283 IDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 15/100 (15%), Positives = 36/100 (36%), Gaps = 12/100 (12%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIEL------NSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           L N  +    +  A+  + Q + +       +     Y+N   A+  L E+ +A +   K
Sbjct: 189 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248

Query: 74  AIEID------PRYPKGYYRRGAAYLAMGKFKEALKDFQQ 107
            + +           +  Y  G  Y  +  +++A+    +
Sbjct: 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 288

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 23/151 (15%), Positives = 55/151 (36%), Gaps = 29/151 (19%)

Query: 28  KKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY 81
                A+DLY + + L +           + N    H  L  +  A+    + + I   +
Sbjct: 157 NALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216

Query: 82  ------PKGYYRRGAAYLAMGKFKEALKDFQQ---VKKLSPNDPDAA----------QKV 122
                  + Y   G AY+ +G+F+ A + +++   + +   +    A            +
Sbjct: 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL 276

Query: 123 KECEKAVKKLKFEEAIAVPES--ERHSVADS 151
           ++ EKA+      + +A+ +   +R     +
Sbjct: 277 QDYEKAID--YHLKHLAIAQELKDRIGEGRA 305

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 21/148 (14%), Positives = 44/148 (29%), Gaps = 15/148 (10%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIEL------NSQNAVYYANRAFAHTKLEEYGSA 67
           +     L N  F    Y++A++ +   + L          A    N       L  +  A
Sbjct: 43  SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEA 102

Query: 68  IQDASKAIEIDPRYPKGYYRRG--AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125
           I    + ++I     +   + G   A   +G    A                        
Sbjct: 103 IVCCQRHLDI---SRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNAL 159

Query: 126 EKAVKKLKFEEAIAVPES--ERHSVADS 151
           + AV    +EE +++  +  +R +   +
Sbjct: 160 QAAVD--LYEENLSLVTALGDRAAQGRA 185

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 54.1 bits (130), Expect = 3e-08
 Identities = 18/122 (14%), Positives = 34/122 (27%), Gaps = 12/122 (9%)

Query: 3   NMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAF 56
            M  EN +   A      A +       S+A+ LY QA  +          A      + 
Sbjct: 104 VMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASR 163

Query: 57  AHTKLEEYGSAIQDASKAIEIDPRYP------KGYYRRGAAYLAMGKFKEALKDFQQVKK 110
              + +++  A     K   +           K    +    L    +  A K  ++   
Sbjct: 164 LLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYS 223

Query: 111 LS 112
           + 
Sbjct: 224 IP 225

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 53.0 bits (127), Expect = 6e-08
 Identities = 33/142 (23%), Positives = 50/142 (35%), Gaps = 15/142 (10%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSA 67
           A E    A     AK+  QA D Y Q  E ++ N      A  +         L+    A
Sbjct: 36  ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEA 95

Query: 68  IQDASKAIEI-----DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKV 122
           +Q   KA  +      P        R    +      +A+  +QQ   +  N+    Q  
Sbjct: 96  VQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAA 155

Query: 123 KECEKA----VKKLKFEEAIAV 140
           +   KA    V++ KF+EA A 
Sbjct: 156 ELIGKASRLLVRQQKFDEAAAS 177

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 15/133 (11%), Positives = 34/133 (25%), Gaps = 13/133 (9%)

Query: 3   NMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAF 56
             E E      AE +   +    R +K+ +A     +   +  +             +  
Sbjct: 144 VFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203

Query: 57  AHTKLEEYGSAIQDASKAIEI----DPRYPKGYYRRGAAYLAM--GKFKEALKDFQQVKK 110
                 +Y +A +   ++  I                 AY      +     +    V  
Sbjct: 204 VQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAYDEQDEEQLLRVCRS-PLVTY 262

Query: 111 LSPNDPDAAQKVK 123
           +  +    A  +K
Sbjct: 263 MDNDYAKLAISLK 275

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 19/109 (17%), Positives = 35/109 (32%), Gaps = 16/109 (14%)

Query: 12  SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----AVYYANRAFAHTKLEEYGSA 67
           S   EL         A      +  +  AI+  +++    +  Y+    A+  L +Y  A
Sbjct: 46  SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKA 105

Query: 68  IQDASKAIEIDPRYPKGYYRR---------GAAYLAMGKFKEALKDFQQ 107
           +Q     + +         R          G     MG+F EA    ++
Sbjct: 106 MQYHKHDLTL---AKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCER 151

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 16/148 (10%), Positives = 43/148 (29%), Gaps = 27/148 (18%)

Query: 29  KYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP 82
                 + +    +  S +       +  A          +  + +     AI+      
Sbjct: 23  SGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL 82

Query: 83  KG----YYRRGAAYLAMGKFKEALKDFQQ---VKKLSPNDPDAA----------QKVKEC 125
           +     Y + G AY  +G + +A++  +    + K   +    A          + +   
Sbjct: 83  RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRF 142

Query: 126 EKAVKKLKFEEAIAVPES--ERHSVADS 151
           ++A      E  + +     +R S   +
Sbjct: 143 DEAAI--CCERHLTLARQLGDRLSEGRA 168

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 14/118 (11%)

Query: 7   ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL------NSQNAVYYANRAFAHTK 60
           + ++  RA     L N      ++  A + Y + + L          A    +    +T 
Sbjct: 258 DRAAERRA--NSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTL 315

Query: 61  LEEYGSAIQDASKAIEID------PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112
           L E+ +AI+  ++ + I           +  +  G A+ A+G  + ALK  +Q  +L+
Sbjct: 316 LHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 15/100 (15%), Positives = 37/100 (37%), Gaps = 12/100 (12%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASK 73
           L N  +    +  AI+ + + + +  +           +N   +H  L ++  A +   +
Sbjct: 229 LGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288

Query: 74  AI----EIDPRYPKG--YYRRGAAYLAMGKFKEALKDFQQ 107
            +    E+  R  +    Y  G  Y  + +F  A++   +
Sbjct: 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 14/123 (11%), Positives = 33/123 (26%), Gaps = 29/123 (23%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSA 67
           A+    L N      ++ +A     + + L  Q            N    +    ++   
Sbjct: 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQ 185

Query: 68  IQDASKAIEIDPRYPK--GYYRR---------------------GAAYLAMGKFKEALKD 104
                   ++     +   +Y+                      G  Y  +G F+ A++ 
Sbjct: 186 RNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEH 245

Query: 105 FQQ 107
            Q+
Sbjct: 246 HQE 248

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 14/123 (11%)

Query: 21  ANEAFRAKKYSQAIDLYSQAIELNSQ-----NAVYYANRAFAHTKLEEYGSAIQDASKAI 75
           A +A +  KY  A  L+   +EL        NA+Y+     ++     +  A       +
Sbjct: 9   AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYW--LGESYYATRNFQLAEAQFRDLV 66

Query: 76  EIDP---RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132
              P   +   G  + G +    GK  EA +  QQV    P    AA+  +   + ++ +
Sbjct: 67  SRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSD-AARVAQ---ERLQSI 122

Query: 133 KFE 135
           +  
Sbjct: 123 RLG 125

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 11/104 (10%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASK 73
           +A      K Y +A+     A+EL          A+   N A ++ +  +   A++   K
Sbjct: 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247

Query: 74  AIEI-----DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112
           A ++         PK  +         G+ ++A +  ++     
Sbjct: 248 AAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHI 291

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 2/109 (1%)

Query: 11  VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQD 70
           V  AE LKA   +  +  +  Q + +Y   +    Q  + Y      +         ++ 
Sbjct: 28  VPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87

Query: 71  ASKAIEIDPRYPKGYY--RRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117
                +      K Y    RG       ++ EA+  +++ +K  P   D
Sbjct: 88  IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSD 136

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 47.9 bits (114), Expect = 3e-06
 Identities = 19/109 (17%), Positives = 40/109 (36%), Gaps = 13/109 (11%)

Query: 17  LKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQD 70
           L       F  K+Y +AI  Y +A +           A ++   A A+  +++   ++  
Sbjct: 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYH 163

Query: 71  ASKAIEIDPRYPKGYYRR-------GAAYLAMGKFKEALKDFQQVKKLS 112
             +A++I   +P    R           Y     + +AL   +   +L+
Sbjct: 164 ILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELA 212

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 47.5 bits (113), Expect = 5e-06
 Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 13/114 (11%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVY-------YANRAFAHTKLEEYGS 66
           AE    +A   +  K+   ++    QA+++   + +Y           A  +   + Y  
Sbjct: 141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDK 200

Query: 67  AIQDASKAIEI------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114
           A+     A+E+      D            +Y   G  + A++ FQ+  K+S  
Sbjct: 201 ALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 9/111 (8%), Positives = 32/111 (28%), Gaps = 7/111 (6%)

Query: 4   METENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ-NAVYYANRAFAHTKLE 62
           +  E       + L  L+    +A +  +A     + ++  +  +  +Y         + 
Sbjct: 251 VSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVY 310

Query: 63  EYGSAIQDASKAIEI------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQ 107
           +     +     +                    A + +   F++A   +++
Sbjct: 311 KETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRK 361

>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture, hydrolase; 2.72A {Shigella flexneri 2A} Length = 280

 Score = 50.9 bits (121), Expect = 3e-07
 Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 9/117 (7%)

Query: 228 GDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLS 287
           GDVHG + +L+ +         ++     GD V RG  S++V+  + +       ++ L 
Sbjct: 7   GDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSLG----DSVRLV 62

Query: 288 RGNHESKSMNKIYGFEGEVRSK-----LSETFVELFAEVFCCLPLAHVLNQKVFVVH 339
            GNH+   +    G             L     +         PL  +  +K  V+ 
Sbjct: 63  LGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMA 119

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 50.6 bits (121), Expect = 4e-07
 Identities = 26/148 (17%), Positives = 46/148 (31%), Gaps = 14/148 (9%)

Query: 5   ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAH 58
           E E  ++   +     A      K+Y  AI  + +A  +               N     
Sbjct: 175 EHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCK 234

Query: 59  TKLEEYGSAIQDASKAIEID------PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112
               +Y  AI    +AI +       P  P+ Y+     +  +GK  +A +   +    S
Sbjct: 235 NSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS 294

Query: 113 P--NDPDAAQKVKECEKAVKKLKFEEAI 138
               D     + +  +        EEAI
Sbjct: 295 QKAGDVIYLSEFEFLKSLYLSGPDEEAI 322

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 47.5 bits (113), Expect = 4e-06
 Identities = 15/112 (13%), Positives = 43/112 (38%), Gaps = 15/112 (13%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASK 73
                   ++Y  AI  + +A             A ++   + ++  +++   ++  A +
Sbjct: 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQ 168

Query: 74  AIEIDPRYPKGYYRR--------GAAYLAMGKFKEALKDFQQVKKLSPNDPD 117
           A EI   + + Y  R           +L + ++++A+  FQ+   ++  +  
Sbjct: 169 AYEIYKEH-EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ 219

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 19/107 (17%), Positives = 41/107 (38%), Gaps = 13/107 (12%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIEL-------NSQNAVYYANRAFAHTKLEEYGS 66
           AE    ++   +  K+   ++D   QA E+       N +    ++  A     L++Y  
Sbjct: 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYED 202

Query: 67  AIQDASKAIEIDPRYP------KGYYRRGAAYLAMGKFKEALKDFQQ 107
           AI    KA  +           +  Y  G    +  ++++A+  F++
Sbjct: 203 AISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKR 249

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 17/114 (14%), Positives = 34/114 (29%), Gaps = 7/114 (6%)

Query: 18  KALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77
           K    E  R       ID     +        +   R        EY SAI+   KA   
Sbjct: 74  KMRIEEQPRLSDLLLEIDKKQARLT-GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESK 132

Query: 78  DPRYP------KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125
                      + +++   +Y  M +   ++   +Q  ++         ++ +C
Sbjct: 133 LIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQC 186

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 40.2 bits (94), Expect = 9e-04
 Identities = 12/95 (12%), Positives = 27/95 (28%), Gaps = 7/95 (7%)

Query: 20  LANEAFRAKKYSQAIDLYSQAI----ELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAI 75
           +    ++  K  +A + +S+ +    +      +       +         AIQ     +
Sbjct: 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFL 329

Query: 76  EIDPRYP---KGYYRRGAAYLAMGKFKEALKDFQQ 107
           E    Y             Y     F++A   F +
Sbjct: 330 ESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLK 364

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 48.8 bits (117), Expect = 6e-07
 Identities = 9/109 (8%), Positives = 29/109 (26%), Gaps = 13/109 (11%)

Query: 12  SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYG 65
           + +     L        ++ +A   +    +   ++                      + 
Sbjct: 24  TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83

Query: 66  SAIQDASKAIEIDPRYPK-------GYYRRGAAYLAMGKFKEALKDFQQ 107
           +A +   +  E+    P+         Y      L  G    A +++++
Sbjct: 84  AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 9/84 (10%), Positives = 23/84 (27%), Gaps = 6/84 (7%)

Query: 30  YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--YPKG--- 84
           + +  +L +   E     +      A       +   A Q+  K++    +         
Sbjct: 89  FLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIAC 148

Query: 85  -YYRRGAAYLAMGKFKEALKDFQQ 107
            +   G          EA + + +
Sbjct: 149 AFRGLGDLAQQEKNLLEAQQHWLR 172

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Length = 261

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 21/131 (16%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIEL-----NSQNAVYYANRAFAHTKLEEYGSAI 68
            +E    A E +   KY +AI+ +            + +A +Y   A A+ + +EY  A 
Sbjct: 15  PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYL--ARAYYQNKEYLLAA 72

Query: 69  QDASKAIEIDPRYPK---GYYRRGAAY--------LAMGKFKEALKDFQQVKKLSPND-- 115
            +  + I+I    P+     Y R   Y        L     ++A++ FQ      PN   
Sbjct: 73  SEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL 132

Query: 116 -PDAAQKVKEC 125
             DA QK++E 
Sbjct: 133 VDDATQKIREL 143

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282

 Score = 47.4 bits (112), Expect = 3e-06
 Identities = 14/102 (13%), Positives = 33/102 (32%), Gaps = 6/102 (5%)

Query: 24  AFRAKKYSQAIDLYSQAIELNSQ--NAVYYANRAFAHTKLEEYGSAIQDASKAIE---ID 78
              A++++  ID    A +   +            A   L  +  A +  ++A +    +
Sbjct: 145 YGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGE 204

Query: 79  PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120
                  +    A  + G    A+   + ++   P +P  A 
Sbjct: 205 ACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP-EPKVAA 245

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 45.0 bits (106), Expect = 2e-05
 Identities = 18/123 (14%), Positives = 38/123 (30%), Gaps = 14/123 (11%)

Query: 3   NMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAV-------YYANRA 55
               + S     +     A+      +Y +A D+YS+ I+ +  N +       Y+  + 
Sbjct: 147 WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206

Query: 56  FAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMG-------KFKEALKDFQQV 108
                  +  +A +   +    DP +           L          +  E  K+F   
Sbjct: 207 LCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266

Query: 109 KKL 111
            +L
Sbjct: 267 MRL 269

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 43.1 bits (101), Expect = 8e-05
 Identities = 20/149 (13%), Positives = 41/149 (27%), Gaps = 23/149 (15%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSA 67
           A+     A      K+ + A D + +A +   +          Y              +A
Sbjct: 37  ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96

Query: 68  IQDASKAIEIDPRYPKGYYRRGAA----------YLAMGKFKEALKDFQQVKKLSPNDPD 117
           +     AI+I   +      R  A             +  + +A+  ++   +    D  
Sbjct: 97  VDSLENAIQI---FTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS 153

Query: 118 AAQKVKECEKA----VKKLKFEEAIAVPE 142
            A   K   K         ++ EA  +  
Sbjct: 154 VALSNKCFIKCADLKALDGQYIEASDIYS 182

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 42.5 bits (101), Expect = 5e-05
 Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 18/103 (17%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASK 73
           L N      ++  A + Y + + L  Q       A    +    +T L++Y  AI    K
Sbjct: 55  LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 114

Query: 74  AIEIDPRYPKGYYRR---------GAAYLAMGKFKEALKDFQQ 107
            + I     +   R          G AY A+G   +A+   ++
Sbjct: 115 HLAI---AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 15/109 (13%), Positives = 37/109 (33%), Gaps = 18/109 (16%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIEL------NSQNAVYYANRAFAHTKLEEYGSA 67
                 L N  +    +  A+  + Q + +       +   + Y+N   A+  L E+ +A
Sbjct: 9   GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68

Query: 68  IQDASKAIEIDPRYPKGYYRR---------GAAYLAMGKFKEALKDFQQ 107
            +   K + +     +   R          G  Y  +  +++A+    +
Sbjct: 69  SEYYKKTLLL---ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 114

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 43.7 bits (104), Expect = 6e-05
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 22/113 (19%)

Query: 29  KYSQAIDLYSQAIELNSQN--------AVYYANRAFAHTKLEEYGSAIQDASKAIEI--- 77
           KY +A  L  +A+E+  +         A    N A       +Y        +A+EI   
Sbjct: 126 KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185

Query: 78  -----DPRYPKGYYRRGAAYLAMGKFKEALKDFQQV------KKLSPNDPDAA 119
                DP   K      + YL  GKFK+A   ++++      ++    D +  
Sbjct: 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 24/113 (21%), Positives = 37/113 (32%), Gaps = 21/113 (18%)

Query: 29  KYSQAIDLYSQAIELNSQN--------AVYYANRAFAHTKLEEYGSAIQDASKAIEI--- 77
           +Y  A+ L  QA+E   +         A      A  +    +Y  A    + A+ I   
Sbjct: 42  RYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101

Query: 78  -----DPRYPKGYYRRGAAYLAMGKFKEALKDFQQV-----KKLSPNDPDAAQ 120
                 P            Y   GK+KEA    ++      K L  + PD A+
Sbjct: 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK 154

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 43.4 bits (102), Expect = 8e-05
 Identities = 13/117 (11%), Positives = 31/117 (26%), Gaps = 11/117 (9%)

Query: 3   NMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVY-----YANRAFA 57
            ++        AE     A  A       +A  L   A+E       Y      +     
Sbjct: 3   EIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEV 62

Query: 58  HTKLEEYGSAIQDASKAIEIDPRYPK------GYYRRGAAYLAMGKFKEALKDFQQV 108
                E   ++    +  ++  ++           ++     A G  + A +  ++ 
Sbjct: 63  LHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKA 119

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Length = 225

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 24/137 (17%), Positives = 45/137 (32%), Gaps = 31/137 (22%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRA-----FAHTKLEEYGSAI 68
             E+ A A +  +   + QAI                Y+ +      +A+ K  +   A 
Sbjct: 4   PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGP--YSQQVQLDLIYAYYKNADLPLAQ 61

Query: 69  QDASKAIEIDPRYPK---GYYRRGAAYLAMGKF------------------KEALKDFQQ 107
               + I ++P +P      Y RG   +A+                     + A  DF +
Sbjct: 62  AAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSK 121

Query: 108 VKKLSPND---PDAAQK 121
           + +  PN     DA ++
Sbjct: 122 LVRGYPNSQYTTDATKR 138

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 22/113 (19%)

Query: 29  KYSQAIDLYSQAIELNSQN--------AVYYANRAFAHTKLEEYGSAIQDASKAIEI--- 77
           KY +A  L  +A+E+  +         A    N A       +         +A+EI   
Sbjct: 100 KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT 159

Query: 78  -----DPRYPKGYYRRGAAYLAMGKFKEALKDFQQV------KKLSPNDPDAA 119
                DP   K      + YL  GK+++A   ++++      K+    + D  
Sbjct: 160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNK 212

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 40.2 bits (95), Expect = 8e-04
 Identities = 14/95 (14%), Positives = 22/95 (23%), Gaps = 15/95 (15%)

Query: 29  KYSQAIDLYSQAIEL---------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID- 78
           KY  A  LY + +           N  N   + +        ++   +            
Sbjct: 184 KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKA 243

Query: 79  -----PRYPKGYYRRGAAYLAMGKFKEALKDFQQV 108
                P         GA Y   GK + A       
Sbjct: 244 CKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 41.3 bits (96), Expect = 3e-04
 Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 15/117 (12%)

Query: 5   ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN--------AVYYANRAF 56
            T            A+AN         + IDL+ Q ++              V Y N A 
Sbjct: 146 LTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY-NHAK 204

Query: 57  AHTKLEEYGSAIQDASKAIEI------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQ 107
           A      Y  ++   +KAIEI           + YY+RG     +   +  ++D  +
Sbjct: 205 ALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK 261

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	429
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	100.0
3h63_A	315	Serine/threonine-protein phosphatase 5; metalloenz	100.0
3icf_A	335	PPT, serine/threonine-protein phosphatase T; IRO m	100.0
3e7a_A	299	PP-1A, serine/threonine-protein phosphatase PP1-al	100.0
3ll8_A	357	Serine/threonine-protein phosphatase 2B catalytic	100.0
1aui_A	521	Calcineurin, serine/threonine phosphatase 2B; hydr	100.0
2ie4_C	309	PP2A-alpha;, serine/threonine-protein phosphatase	100.0
1fjm_A	330	Protein serine/threonine phosphatase-1 (alpha ISO	100.0
2z72_A	342	Protein-tyrosine-phosphatase; cold-active enzyme,	100.0
2dfj_A	280	Diadenosinetetraphosphatase; helices and strands m	99.97
2qjc_A	262	Diadenosine tetraphosphatase, putative; putative d	99.89
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.87
1g5b_A	221	Serine/threonine protein phosphatase; bacteriophag	99.83
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.8
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.78
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.78
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.76
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.76
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.76
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.76
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.75
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.75
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.75
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.74
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.74
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.74
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.73
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.72
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.72
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.72
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.72
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.71
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.7
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.7
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.69
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.69
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.68
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.68
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.67
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.67
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.66
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.66
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.66
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.66
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.65
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.65
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.64
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.64
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.63
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.62
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.61
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.61
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.6
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.6
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.6
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.6
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.6
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.6
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.59
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.59
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.59
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.59
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.58
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.58
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.58
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.57
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.57
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.57
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.57
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.57
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.57
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.56
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.56
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.55
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.55
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.55
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.55
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.55
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.55
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.54
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.54
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.54
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.54
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.54
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.54
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.54
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.53
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.53
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.52
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.52
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.52
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.52
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.52
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.51
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.51
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.51
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.5
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.49
3rqz_A	246	Metallophosphoesterase; PSI-biology, midwest cente	99.48
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.48
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.47
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.46
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.45
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.44
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.44
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.43
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.43
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.43
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.42
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.41
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.41
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.41
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.41
1nnw_A	252	Hypothetical protein; structural genomics, PSI, pr	99.4
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.4
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.4
3qfm_A	270	SAPH, putative uncharacterized protein; sandwich f	99.4
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.4
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.39
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.39
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.39
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.39
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.38
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.37
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.37
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.37
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.36
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.36
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.35
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.35
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.35
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.34
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.33
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.33
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.33
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.32
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.31
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.31
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.31
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.28
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.28
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.27
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.27
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.27
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.26
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.26
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.26
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.26
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.26
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.26
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.26
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.24
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.23
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.23
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.22
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.22
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.22
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.22
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.21
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.2
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.2
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.2
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.19
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.19
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.19
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.19
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.19
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.18
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.18
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.17
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.17
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.16
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.15
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.15
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.15
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.13
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.13
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.12
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.12
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.12
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.11
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.11
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.11
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.1
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.1
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.1
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.08
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.06
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.05
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.05
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.04
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.03
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.02
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.0
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.99
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.98
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.97
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.97
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.96
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.93
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.85
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.84
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.83
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.8
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.8
1su1_A	208	Hypothetical protein YFCE; structural genomics, ph	98.79
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.78
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.77
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.75
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.73
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.73
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.72
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.69
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.67
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.67
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.66
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.63
2kkn_A	178	Uncharacterized protein; protein phosphatase 2A ho	98.55
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.53
1s3l_A	190	Hypothetical protein MJ0936; phosphodiesterase, nu	98.52
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.48
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.46
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.46
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.45
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.4
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.38
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.38
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.32
2a22_A	215	Vacuolar protein sorting 29; alpha-beta-BETA-alpha	98.31
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.28
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.28
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.28
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.26
1uf3_A	228	Hypothetical protein TT1561; metallo-dependent pho	98.25
1z2w_A	192	Vacuolar protein sorting 29; VPS29, retromer, phos	98.22
3ck2_A	176	Conserved uncharacterized protein (predicted phosp	98.13
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.08
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.02
2yvt_A	260	Hypothetical protein AQ_1956; structural genomics,	98.01
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.01
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.94
1xm7_A	195	Hypothetical protein AQ_1665; structural genomics,	97.9
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.85
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.81
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.78
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.77
3rl5_A	296	Metallophosphoesterase mpped2; alpha-beta fold, me	97.5
3d03_A	274	Phosphohydrolase; glycerophosphodiesterase, metall	97.5
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.46
3ib7_A	330	ICC protein; metallophosphoesterase, alpha-beta fo	97.44
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.28
2nxf_A	322	Putative dimetal phosphatase; dinuclear metal cent	97.26
3av0_A	386	DNA double-strand break repair protein MRE11; DNA	97.23
2q8u_A	336	Exonuclease, putative; structural genomics, joint	97.19
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.12
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.1
1ii7_A	333	MRE11 nuclease; RAD50, DNA double-strand break rep	97.08
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.75
2xmo_A	443	LMO2642 protein; phosphodiesterase, hydrolase; 1.7	96.75
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.54
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	96.47
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.4
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.35
3tho_B	379	Exonuclease, putative; adenosine triphosphate, bac	96.29
4fbk_A	472	DNA repair and telomere maintenance protein NBS1,	96.21
3t1i_A	431	Double-strand break repair protein MRE11A; DNA rep	96.21
4fbw_A	417	DNA repair protein RAD32; DNA double-strand break	96.17
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.11
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.07
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.98
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	95.83
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.68
2qfp_A	424	Purple acid phosphatase; binuclear, Fe-Zn, hydrola	95.44
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.36
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.1
1xzw_A	426	Purple acid phosphatase; hydrolase; HET: NAG FUC M	94.82
1ute_A	313	Protein (II purple acid phosphatase); tartrate res	94.5
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	94.0
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.76
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	93.57
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	93.45
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	93.25
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	92.75
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	91.88
3tgh_A	342	Glideosome-associated protein 50; phosphatase fold	91.85
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	91.7
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	91.39
3qfk_A	527	Uncharacterized protein; structural genomics, cent	91.31
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	90.91
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	89.58
2z1a_A	552	5'-nucleotidase; metal-binding, nucleotide-binding	88.99
1hp1_A	516	5'-nucleotidase; metallophosphatase, dinuclear, me	88.93
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	88.37
4h2g_A	546	5'-nucleotidase; dimer, hydrolase, phosphatase, ex	88.34
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	88.0
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	84.82
3ztv_A	579	NAD nucleotidase, NADN; hydrolase, NAD pyrophospha	84.04
1t71_A	281	Phosphatase, conserved HYPO; crystal, X-RAY crysta	81.72
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	80.79

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=100.00  E-value=5.2e-81  Score=626.76  Aligned_cols=419  Identities=57%  Similarity=0.983  Sum_probs=389.7

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   89 (429)
                      .++.+.++..+|..++.+|++++|++.|+++++++|+++.++.++|.++.++|++++|+..+++|++++|+++.+++++|
T Consensus         2 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   81 (477)
T 1wao_1            2 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA   81 (477)
T ss_dssp             CHHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            46778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCCccc
Q 014212           90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIE  169 (429)
Q Consensus        90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~  169 (429)
                      .+|..+|++++|++.|+++++++|+++.++..++.+.......++++|+..+++.. ........++++++|.+.++.+.
T Consensus        82 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~al~~~~~~~~~~~~  160 (477)
T 1wao_1           82 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR-SVVDSLDIESMTIEDEYSGPKLE  160 (477)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CC-STTTCCTTSSCCCCTTCCSCCCG
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccc-hhHhhhhhhhccccccccccccc
Confidence            99999999999999999999999999999999999955555555899998887433 23345556889999999999888


Q ss_pred             CCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCC
Q 014212          170 GDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSE  249 (429)
Q Consensus       170 ~~~l~~~~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~  249 (429)
                      ...++...++.+++.++....+++.++..++..+.+++..+|+++++..|.+.++.|+||+||++.+|.++|+..+.++.
T Consensus       161 ~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~e~~~~~~~~~~~~~~~vigDiHG~~~~l~~~l~~~~~~~~  240 (477)
T 1wao_1          161 DGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQFYDLLNIFELNGLPSE  240 (477)
T ss_dssp             GGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTSCSEEEECCCSSCEEEEECBCTTCHHHHHHHHHHHCCCBT
T ss_pred             cccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHccCCCeEEeecCCCcceEEEeCCCCCHHHHHHHHHHcCCCCC
Confidence            86789999999999999999999999999999999999999999999988888999999999999999999999998877


Q ss_pred             CCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccchHHHHHHHHHhccCcccc
Q 014212          250 ENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAH  329 (429)
Q Consensus       250 ~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~  329 (429)
                      .+.+||+|||||||++|+||+.+|+++|+.+|.+|++||||||.+.++..|||.+++.++|+..+++.+.++|++||+++
T Consensus       241 ~~~~v~lGD~vdrG~~s~e~~~~l~~l~~~~~~~~~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lp~~~  320 (477)
T 1wao_1          241 TNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQ  320 (477)
T ss_dssp             TBCEEEESCCSSSSTTHHHHHHHHHHHHHHSTTTEEEECCTTSSHHHHHHHSHHHHHHHHSCTTHHHHHHHHHTTSCSEE
T ss_pred             cCeEEEeccccCCCcchHHHHHHHHHHHhhCCCceEeecCCccHHHHhhhcChHHHHHHHhhHHHHHHHHHHhccCCcEE
Confidence            76799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCeEEEEecCccCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCCCcEEE----------------
Q 014212          330 VLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF----------------  393 (429)
Q Consensus       330 ~~~~~~~~vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~~~~~~~~~~~~~~~----------------  393 (429)
                      ++++++||||||+|||...++++|+.+.|+.++++.+.++|+|||||....++.+++||.|+.|                
T Consensus       321 ~~~~~~~~vHgg~~~~~~~~l~~i~~~~r~~~~~~~~~~~dllWsdp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~  400 (477)
T 1wao_1          321 CINGKVLIMHGGLFSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFLEENNLDY  400 (477)
T ss_dssp             EETTTEEECSSCCCSSSCCCHHHHHTCCCSSCCCSSSHHHHHHHCEECSSSSCEECTTSSSEEECHHHHHHHHHHTTCCE
T ss_pred             EEcCcEEEECCCCCccccCCHHHHHhccCCCCCchhhhhhhhccCCCCccCCcCcCCCCCceeECHHHHHHHHHHcCCeE
Confidence            9999999999999888889999999999999999999999999999998889999999999988                


Q ss_pred             EEeeccccccCceeecCCeEEEEcCCCCCCCcCCCC
Q 014212          394 VVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQVTKL  429 (429)
Q Consensus       394 iir~h~~~~~g~~~~~~~~~~t~fs~~~y~~~~~n~  429 (429)
                      ||||||++++||+++++|+|||||||||||+.++|+
T Consensus       401 iir~H~~~~~g~~~~~~~~~~tvfsa~~y~~~~~n~  436 (477)
T 1wao_1          401 IIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNK  436 (477)
T ss_dssp             EEECCSCCTEEEEEEGGGTEEEEBCCTTTTSSSCCE
T ss_pred             EEECCCCCcCCeEEecCCeEEEEeCCcccccCCCcc
Confidence            999999999999999999999999999999999984

>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors, drug design, cytoplasm, hydrolase, iron, manganese, metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens} SCOP: d.159.1.3 PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A* 3h68_A* 3h69_A* 1s95_A

Probab=100.00  E-value=1.7e-70  Score=508.51  Aligned_cols=267  Identities=60%  Similarity=1.065  Sum_probs=256.8

Q ss_pred             CCCCcccCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHH
Q 014212          163 YSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFE  242 (429)
Q Consensus       163 ~~~~~~~~~~l~~~~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~  242 (429)
                      |.++++....++.+.++.+++.+++++.++++++..+|.+++++|.++|+++++..|.+.+++|+|||||++.+|.++|+
T Consensus         1 y~gp~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~ep~l~~l~~p~~~ri~viGDIHG~~~~L~~ll~   80 (315)
T 3h63_A            1 YSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQFYDLLNIFE   80 (315)
T ss_dssp             CCSCCCBTTBCCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHTSCSEEEECCCTTCEEEEECCCTTCHHHHHHHHH
T ss_pred             CCCCcCCCCCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCeEEEecCCCceEEEEecCCCCHHHHHHHHH
Confidence            45667776669999999999999999999999999999999999999999999999988999999999999999999999


Q ss_pred             HcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccchHHHHHHHHHh
Q 014212          243 LNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVF  322 (429)
Q Consensus       243 ~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (429)
                      ..++++.+++++|||||||||++|+||+.+|+++|+.+|+++++||||||.+.++..|||.+|+.++|+..+|+.+.++|
T Consensus        81 ~~g~~~~~~~~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~~l~~~ygf~~e~~~k~~~~l~~~~~~~f  160 (315)
T 3h63_A           81 LNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVF  160 (315)
T ss_dssp             HHCCCBTTBCEEEESCCSSSSTTHHHHHHHHHHHHHHSTTTEEEECCTTSSHHHHHHHSHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HhCCCCCCCEEEEeCCccCCCcChHHHHHHHHHhhhhcCCcEEEEecCcccccccccccccHHHHHHhhhHHHHHHHHHH
Confidence            99998877779999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCcccceecCeEEEEecCccCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCCCcEEE---------
Q 014212          323 CCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF---------  393 (429)
Q Consensus       323 ~~lp~~~~~~~~~~~vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~~~~~~~~~~~~~~~---------  393 (429)
                      ++||+++++++++||||||++||...++++|+.++|+.+++++++++|+|||||....||.+++||.|+.|         
T Consensus       161 ~~LPla~ii~~~il~vHGGl~sp~~~~l~~i~~i~R~~~~p~~g~~~dllWsDP~~~~g~~~s~RG~g~~fg~~~~~~fl  240 (315)
T 3h63_A          161 EWLPLAQCINGKVLIMHGGLFSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFL  240 (315)
T ss_dssp             TTSCSEEEETTTEEECSSCCCSSTTCCHHHHHHCCCSSCCCSSSHHHHHHHCEECSSSSEEECTTSSSEEECHHHHHHHH
T ss_pred             hcCCcEEEEcCCEEEeCCCCCCcccCCHHHHHhCcccccccccchhhhheecCCCCCCCcCcCCCCceEEECHHHHHHHH
Confidence            99999999999999999999888899999999999999999999999999999998889999999999998         


Q ss_pred             -------EEeeccccccCceeecCCeEEEEcCCCCCCCcCCCC
Q 014212          394 -------VVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQVTKL  429 (429)
Q Consensus       394 -------iir~h~~~~~g~~~~~~~~~~t~fs~~~y~~~~~n~  429 (429)
                             ||||||++++||+++++++|||||||||||+.++|+
T Consensus       241 ~~n~l~~iiR~Hq~~~~Gy~~~~~~~~iTvfSapnY~~~~~N~  283 (315)
T 3h63_A          241 EENNLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNK  283 (315)
T ss_dssp             HHHTCSEEEECCSCCTTSEEEEGGGTEEEECCCTTGGGTSCCC
T ss_pred             HHcCCcEEEEeceeecCCeEEecCCeEEEEECCcccCCCCCcc
Confidence                   999999999999999999999999999999999996

>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein, structural genomics, PSI-2, protein structu initiative; 2.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-69  Score=506.60  Aligned_cols=267  Identities=48%  Similarity=0.873  Sum_probs=247.0

Q ss_pred             CCCCCCcccCCCCCHHHHHHHH-HHhhcccCCcHHHHHHHHHHHHHHHhhCCCeeeecCC--CCCceEEEccCCCCHHHH
Q 014212          161 PQYSGARIEGDVITLDFVKKMM-DDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIP--DGKHFTVCGDVHGQFYDL  237 (429)
Q Consensus       161 ~~~~~~~~~~~~l~~~~l~~li-~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~--~~~~~~v~GDihG~~~~l  237 (429)
                      +.|.++++..  ++.+.++.++ +.+++++.++++++..+|.+++++|.++|+++++..|  .+.+++|||||||++.+|
T Consensus         2 ~~y~g~~~~~--~~~~~~~~~i~~~~~~~~~l~~~~~~~l~~~~~~il~~ep~~~~l~~p~~~~~ri~viGDIHG~~~~L   79 (335)
T 3icf_A            2 NAFKGAKIKN--MSQEFISKMVNDLFLKGKYLPKKYVAAIISHADTLFRQEPSMVELENNSTPDVKISVCGDTHGQFYDV   79 (335)
T ss_dssp             ------------CCHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHHHHTSCSEEEECCSSSTTCEEEEECCCTTCHHHH
T ss_pred             CCCCCCccCC--CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCeEEecCCcccCceEEEEecCCCCHHHH
Confidence            4567777766  5999999999 9999999999999999999999999999999999988  778899999999999999


Q ss_pred             HHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccchHHHHH
Q 014212          238 LNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVEL  317 (429)
Q Consensus       238 ~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~~~~~~  317 (429)
                      .++|+..++++..++|||||||||||++|+||+.+|+++|+.+|+++++||||||.+.++..|||.+|+.++|+..+|+.
T Consensus        80 ~~ll~~~g~~~~~~~~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~llrGNHE~~~i~~~ygf~~e~~~k~~~~l~~~  159 (335)
T 3icf_A           80 LNLFRKFGKVGPKHTYLFNGDFVDRGSWSCEVALLFYCLKILHPNNFFLNRGNHESDNMNKIYGFEDECKYKYSQRIFNM  159 (335)
T ss_dssp             HHHHHHHCCCBTTEEEEECSCCSSSSTTHHHHHHHHHHHHHHCTTTEEECCCTTSSHHHHHHHSHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHcCCCCCCcEEEEeCCccCCCcChHHHHHHHHHHhhhCCCcEEEecCchhhhhhhhccccchHhHhhccHHHHHH
Confidence            99999999987766799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhccCcccceecCeEEEEecCccCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCCCcEEE----
Q 014212          318 FAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF----  393 (429)
Q Consensus       318 ~~~~~~~lp~~~~~~~~~~~vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~~~~~~~~~~~~~~~----  393 (429)
                      +.+||++||+++++++++|||||||+||...++++|+.+.|+.+++++++++|+|||||....+|.+++||.|+.|    
T Consensus       160 ~~~~f~~LPlaaii~~~il~vHGGl~sp~~~~ld~i~~i~R~~~~p~~g~~~dlLWSDP~~~~g~~~s~RG~g~~FG~~~  239 (335)
T 3icf_A          160 FAQSFESLPLATLINNDYLVMHGGLPSDPSATLSDFKNIDRFAQPPRDGAFMELLWADPQEANGMGPSQRGLGHAFGPDI  239 (335)
T ss_dssp             HHHHHTTSCSEEEETTTEEECSSCCCSCTTCCHHHHHTCCCSSCCCSSSHHHHHHHCEECSSSSEEECCCC--EEECHHH
T ss_pred             HHHHHhhcceeEEEcCcEEEecCCcCCCccCCHHHHHhCccccccccccchhhhhccCCCCcCCcccCCCCCceeeCHHH
Confidence            9999999999999999999999999888999999999999999999999999999999998889999999999998    


Q ss_pred             ------------EEeeccccccCceeecCCeEEEEcCCCCCCCcCCCC
Q 014212          394 ------------VVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQVTKL  429 (429)
Q Consensus       394 ------------iir~h~~~~~g~~~~~~~~~~t~fs~~~y~~~~~n~  429 (429)
                                  ||||||++++||+++++++|||||||||||+.++|+
T Consensus       240 ~~~fl~~n~l~~IiR~Hq~~~~Gy~~~~~~~liTvfSapnYc~~~~N~  287 (335)
T 3icf_A          240 TDRFLRNNKLRKIFRSHELRMGGVQFEQKGKLMTVFSAPNYCDSQGNL  287 (335)
T ss_dssp             HHHHHHHTTCSEEEECSSCCTEEEEEEGGGTEEEECCCTTGGGTSCCE
T ss_pred             HHHHHHHCCCeEEEEcCceecCeEEEecCCcEEEEECCcccCCCCCCc
Confidence                        999999999999999999999999999999999995

>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit; carbohydrate metabolism, cell cycle, cell division; HET: 1ZN; 1.63A {Homo sapiens} SCOP: d.159.1.3 PDB: 3e7b_A* 3egg_A* 3egh_A* 3hvq_A 3v4y_A* 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A 2o8a_A 1u32_A* 1s70_A*

Probab=100.00  E-value=4.2e-67  Score=482.24  Aligned_cols=246  Identities=40%  Similarity=0.837  Sum_probs=232.1

Q ss_pred             HHHHHHHhhccc--------CCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCC
Q 014212          178 VKKMMDDFKNQK--------CLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSE  249 (429)
Q Consensus       178 l~~li~~l~~~~--------~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~  249 (429)
                      ++.+++.+.+..        .++++++..+|.+++++|.++|+++++..+    +.|+||+||++.+|.++|+..++++.
T Consensus         8 ~d~~i~~l~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~ep~ll~~~~~----i~viGDIHG~~~~L~~ll~~~g~~~~   83 (299)
T 3e7a_A            8 LDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPE   83 (299)
T ss_dssp             HHHHHHHHHTTTTSCTTCCCCCCHHHHHHHHHHHHHHHHHSCSEEEECSS----EEEECBCTTCHHHHHHHHHHHCSTTS
T ss_pred             HHHHHHHHHhccccCCCcccCCCHHHHHHHHHHHHHHHHhCCCeeecCCC----EEEEecCCCCHHHHHHHHHHhCCCCC
Confidence            566666664332        588999999999999999999999999876    99999999999999999999998876


Q ss_pred             CCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccchHHHHHHHHHhccCcccc
Q 014212          250 ENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAH  329 (429)
Q Consensus       250 ~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~  329 (429)
                      + .|+|||||||||++|+||+.+|+++|+.+|+++++||||||.+.++..|||.+|+.++|+..+|+.+.++|++||+++
T Consensus        84 ~-~~vfLGD~VDrG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~~i~~~ygF~~e~~~ky~~~l~~~~~~~f~~LPlaa  162 (299)
T 3e7a_A           84 S-NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAA  162 (299)
T ss_dssp             S-CEEECSCCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSSHHHHHHHSHHHHHHHHSCHHHHHHHHHHHTTCCCEE
T ss_pred             c-cEEeCCcccCCCCCcHHHHHHHHHHHhhCCCcEEEEecCchhhhhcccccchHHHHHHhhHHHHHHHHHHHhhCCceE
Confidence            5 599999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCeEEEEecCccCCCCCCccccccccCCCCCCCCCcccccccCCCCC-CCCCCCCCCCCcEEE---------------
Q 014212          330 VLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQP-LPGRGPSKRGVGLSF---------------  393 (429)
Q Consensus       330 ~~~~~~~~vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~-~~~~~~~~~~~~~~~---------------  393 (429)
                      ++++++||||||| ||+..++++|+.++||.++|++++++|+|||||.. ..+|.+|+||.|+.|               
T Consensus       163 ii~~~il~vHGGl-sp~~~~l~~i~~i~R~~~~p~~~~~~dllWsDP~~~~~~~~~~~RG~~~~fG~~~~~~fl~~n~l~  241 (299)
T 3e7a_A          163 IVDEKIFCCHGGL-SPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDLD  241 (299)
T ss_dssp             EETTTEEEESSCC-CTTCCCTHHHHTCCSSCCCCSSSHHHHHHHCEECTTCSSEEECTTSSSEEECHHHHHHHHHHHTCS
T ss_pred             EECCeEEEEcCcc-CcccCCHHHHHhccCCCcCCcchhhhhhhcCCccccccCcccCCCCcceeeCHHHHHHHHHHCCCe
Confidence            9999999999999 89999999999999999999999999999999986 478999999999998               


Q ss_pred             -EEeeccccccCceeecCCeEEEEcCCCCCCCcCCCC
Q 014212          394 -VVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQVTKL  429 (429)
Q Consensus       394 -iir~h~~~~~g~~~~~~~~~~t~fs~~~y~~~~~n~  429 (429)
                       ||||||++++||+++++++||||||||||||.++|+
T Consensus       242 ~IiR~Hq~v~~Gy~~~~~~~~iTvfSapnY~~~~~N~  278 (299)
T 3e7a_A          242 LICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNA  278 (299)
T ss_dssp             EEEECCSCCTTSEEEETTTTEEEEBCCSSGGGTCCCC
T ss_pred             EEEEcCeeeecceEEecCCeEEEEECCcccCCCCCcc
Confidence             999999999999999999999999999999999995

>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A* 1tco_A* 1mf8_A* 2jog_A

Probab=100.00  E-value=3.7e-66  Score=483.77  Aligned_cols=246  Identities=42%  Similarity=0.794  Sum_probs=233.3

Q ss_pred             HHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEcc
Q 014212          178 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG  257 (429)
Q Consensus       178 l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lG  257 (429)
                      ++.+++++++.+.++++++..+|.+++++|.++|+++++..+    +.|+|||||++.+|.++|+..+.++.+ .|+|||
T Consensus        30 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~ep~ll~~~~p----i~ViGDIHG~~~dL~~ll~~~g~~~~~-~~vfLG  104 (357)
T 3ll8_A           30 VDILKAHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAP----VTVCGDIHGQFFDLMKLFEVGGSPANT-RYLFLG  104 (357)
T ss_dssp             HHHHHHHHHTTCCBCHHHHHHHHHHHHHHHHTSCSEEEECSS----EEEECCCTTCHHHHHHHHHHHCCTTTC-CEEECS
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCCCeEEeccc----ceeeccCCCCHHHHHHHHHhcCCCCCc-EEEECC
Confidence            778899999999999999999999999999999999999876    999999999999999999998887654 699999


Q ss_pred             ccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccchHHHHHHHHHhccCcccceecCeEEE
Q 014212          258 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFV  337 (429)
Q Consensus       258 D~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~  337 (429)
                      ||||||++|+||+.+|+++|+.+|+++++||||||.+.++..|||.+|+.++|+..+|+.+.++|++||+++++++++||
T Consensus       105 D~VDRG~~s~Evl~lL~~lk~~~p~~v~llrGNHE~~~i~~~ygF~~E~~~ky~~~l~~~~~~~f~~LPlaaii~~~il~  184 (357)
T 3ll8_A          105 DYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLC  184 (357)
T ss_dssp             CCSSSSTTHHHHHHHHHHHHHHCTTTEEECCCTTSSHHHHHHSSHHHHHHHHSCHHHHHHHHHHHHTSCSEEEETTTEEE
T ss_pred             CccCCCcChHHHHHHHHHhhhhcCCcEEEEeCchhhhhhhcccCchhhhhhccchhHHHHHHHHHHhCCcceEEcccEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCccCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCC-------CC-CCCCCCcEEE----------------
Q 014212          338 VHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPG-------RG-PSKRGVGLSF----------------  393 (429)
Q Consensus       338 vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~~~-------~~-~~~~~~~~~~----------------  393 (429)
                      ||||| ||+..++++|+.++|+.++++.+.++|+|||||....+       |. +++||.|+.|                
T Consensus       185 vHGGl-sp~l~~ld~I~~i~R~~e~p~~g~~~DlLWSDP~~~~~~~~~~~~~~~~s~RG~g~~FG~~~~~~Fl~~n~l~~  263 (357)
T 3ll8_A          185 VHGGL-SPEINTLDDIRKLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLS  263 (357)
T ss_dssp             CSSCC-CTTCCSHHHHHTCCCSSCCCSSSHHHHHHHCEECTTTTSCSCCCSEEECTTTTSSEEECHHHHHHHHHHTTCSE
T ss_pred             EecCc-CcccCCHHHHhhccccccCCccCchhHhhccCccccccccccccccccCCCCCCceEEChHHHHHHHHHCCCeE
Confidence            99999 89999999999999999999999999999999987644       33 5789999999                


Q ss_pred             EEeeccccccCceeecCC------eEEEEcCCCCCCCcCCCC
Q 014212          394 VVRSHEVKDEGYEIEHDG------KLITVFSAPNYCDQVTKL  429 (429)
Q Consensus       394 iir~h~~~~~g~~~~~~~------~~~t~fs~~~y~~~~~n~  429 (429)
                      ||||||++++||++++++      +||||||||||||.++|+
T Consensus       264 IiRaHq~~~~Gy~~~~~~~~~g~~~liTvFSApnYc~~~~N~  305 (357)
T 3ll8_A          264 ILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNK  305 (357)
T ss_dssp             EEECCSCCTTSEEECCBCTTTSSBSEEEECCCTTGGGTSCCC
T ss_pred             EEEeccccccceEEecCCcCCCCCcEEEEECCCccCCCCCcc
Confidence            999999999999999886      799999999999999996

>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase, immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3

Probab=100.00  E-value=2.6e-62  Score=474.08  Aligned_cols=247  Identities=42%  Similarity=0.776  Sum_probs=231.9

Q ss_pred             HHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEc
Q 014212          177 FVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFN  256 (429)
Q Consensus       177 ~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~l  256 (429)
                      .++.+++++.+...++++++..+|.+++++|.++|+++++..+    ++|||||||++.+|.++|+..+.++. +.||||
T Consensus        42 ~~d~l~~~~~~~~~l~~~~i~~L~~~a~~il~~Ep~ll~l~~p----I~VIGDIHGq~~dL~~LL~~~g~p~~-d~yVFL  116 (521)
T 1aui_A           42 RVDILKAHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAP----VTVCGDIHGQFFDLMKLFEVGGSPAN-TRYLFL  116 (521)
T ss_dssp             CHHHHHHHHHTTCCBCHHHHHHHHHHHHHHHHTSCSEEEECSS----EEEECCCTTCHHHHHHHHHHHCCTTT-CCEEEC
T ss_pred             CHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCCCeEeeccc----eeeccCCCCCHHHHHHHHHhcCCCCc-ceEEEc
Confidence            3778899999999999999999999999999999999999866    99999999999999999998887654 569999


Q ss_pred             cccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccchHHHHHHHHHhccCcccceecCeEE
Q 014212          257 GDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVF  336 (429)
Q Consensus       257 GD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~  336 (429)
                      |||||||++|+||+.+|+++|+.+|+++++||||||.+.++..|||.+||..+|+..+|+.+.+||++||+++++++++|
T Consensus       117 GDyVDRGp~S~Evl~lL~aLk~~~P~~v~lLRGNHE~~~l~~~ygF~~E~~~ky~~~l~~~~~~~f~~LPlaaii~~~il  196 (521)
T 1aui_A          117 GDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFL  196 (521)
T ss_dssp             SCCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSSHHHHHHSSHHHHHHHHSCHHHHHHHHHHHTTSCCEEEETTTEE
T ss_pred             CCcCCCCCCHHHHHHHHHHHhhhCCCeEEEecCCccHHHHHHHhCccHHHHHhhhhHHHHHHHHHHHhCCceEEecCCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCccCCCCCCccccccccCCCCCCCCCcccccccCCCCCCC-------CCCCC-CCCCcEEE---------------
Q 014212          337 VVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLP-------GRGPS-KRGVGLSF---------------  393 (429)
Q Consensus       337 ~vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~~-------~~~~~-~~~~~~~~---------------  393 (429)
                      |||||+ +|...++++|+.++|+.+++..++++|+|||||....       +|.++ .||.|+.|               
T Consensus       197 ~VHGGl-sP~~~sld~I~~I~R~~e~p~~g~~~DLLWSDP~~~~g~~~~~~~f~~ns~RG~g~~FG~d~v~~FL~~n~l~  275 (521)
T 1aui_A          197 CVHGGL-SPEINTLDDIRKLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLL  275 (521)
T ss_dssp             EESSCC-CTTCCSHHHHHHSCCSSSCCSSSHHHHHHHCEECTTTTSCSSCCCEEECTTTTSSEEECHHHHHHHHHHTTCS
T ss_pred             EECCCc-CcccCCHHHhhhccCCcCCCccchhhhheecCccccccccccCcceecccCCCcccccCHHHHHHHHHHcCCc
Confidence            999999 8999999999999999999999999999999998753       34444 79999998               


Q ss_pred             -EEeeccccccCceeecCC------eEEEEcCCCCCCCcCCCC
Q 014212          394 -VVRSHEVKDEGYEIEHDG------KLITVFSAPNYCDQVTKL  429 (429)
Q Consensus       394 -iir~h~~~~~g~~~~~~~------~~~t~fs~~~y~~~~~n~  429 (429)
                       ||||||++++||++++++      +||||||||||||.++|+
T Consensus       276 lIIRaHq~v~~Gy~~~~~~~~~g~~kliTVFSApNYc~~~~N~  318 (521)
T 1aui_A          276 SILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNK  318 (521)
T ss_dssp             EEEECCSCCTTSEEECCBCTTTSSBSEEEECCCSSGGGTSCCC
T ss_pred             EEEEccchhccceeeecCCcCCCCCeEEEEeCCcccCCCCCce
Confidence             999999999999999987      599999999999999995

>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform; protein-protein complex, heat repeat, signaling protein; HET: OKA; 2.60A {Homo sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C* 3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C* 2nyl_C*

Probab=100.00  E-value=7.5e-62  Score=452.97  Aligned_cols=251  Identities=38%  Similarity=0.714  Sum_probs=237.7

Q ss_pred             CCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCC
Q 014212          173 ITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENP  252 (429)
Q Consensus       173 l~~~~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~  252 (429)
                      ++...++.+++.+.....++++++..+|.+++++|.++|+++++..+    ++|+||+||++.+|.++|+..+.++.. .
T Consensus         5 ~~~~~~~~~i~~~~~~~~l~~~~~~~l~~~~~~il~~e~~~~~~~~~----i~viGDIHG~~~~L~~ll~~~~~~~~~-~   79 (309)
T 2ie4_C            5 VFTKELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCP----VTVCGDVHGQFHDLMELFRIGGKSPDT-N   79 (309)
T ss_dssp             -CHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHSCTTEEECSS----EEEECCCTTCHHHHHHHHHHHCCTTTS-C
T ss_pred             hhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCEEeccCC----EEEEecCCCCHHHHHHHHHHcCCCCCC-E
Confidence            34567899999999999999999999999999999999999999766    999999999999999999999987655 5


Q ss_pred             eEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccc-hHHHHHHHHHhccCccccee
Q 014212          253 YLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLS-ETFVELFAEVFCCLPLAHVL  331 (429)
Q Consensus       253 ~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~lp~~~~~  331 (429)
                      ++|+|||||||++|+||+.+|+++|..+|+++++||||||.+.++..|||.+|+.++|+ ..+|+.+.++|++||+++++
T Consensus        80 ~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~~l~~~~gf~~e~~~~yg~~~l~~~~~~~~~~LPl~~~i  159 (309)
T 2ie4_C           80 YLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALV  159 (309)
T ss_dssp             EEECSCCSSSSTTHHHHHHHHHHHHHHCTTTEEECCCTTSSTTGGGTSSHHHHHHHHSSSTHHHHHHHHHTTSSCSCEEE
T ss_pred             EEEeCCccCCCCChHHHHHHHHHHHhhCCCcEEEEeCCCCHHHHhhhhhhhHHHHhhcccHHHHHHHHHHHHhCCceEEE
Confidence            99999999999999999999999999999999999999999999999999999999995 57999999999999999999


Q ss_pred             cCeEEEEecCccCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCCCcEEE----------------EE
Q 014212          332 NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF----------------VV  395 (429)
Q Consensus       332 ~~~~~~vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~~~~~~~~~~~~~~~----------------ii  395 (429)
                      +++++|||||| +|...++++|+.++|+.+++..+.++|+|||||....+|.+++||.|+.|                ||
T Consensus       160 ~~~il~vHgGl-~p~~~~~~~i~~i~r~~~~~~~~~~~dllWsdp~~~~~~~~s~RG~g~~fG~~~~~~fl~~n~l~~ii  238 (309)
T 2ie4_C          160 DGQIFCLHGGL-SPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVS  238 (309)
T ss_dssp             TTTEEECSSCC-CTTCCSHHHHHTSCCSSCCCSSSHHHHHHHCEECSSSSEEECTTSSSEEECHHHHHHHHHHTTCSEEE
T ss_pred             cCcEEEECCCC-CCcccCHHHHHhhcccccCChhHHHHHHhhCCCccccccccCCCCcccccCHHHHHHHHHHcCCeEEE
Confidence            99999999999 89999999999999999999999999999999998889999999999988                99


Q ss_pred             eeccccccCceeecCCeEEEEcCCCCCCCcCCCC
Q 014212          396 RSHEVKDEGYEIEHDGKLITVFSAPNYCDQVTKL  429 (429)
Q Consensus       396 r~h~~~~~g~~~~~~~~~~t~fs~~~y~~~~~n~  429 (429)
                      ||||++.+||++.++++|||||||||||+.++|+
T Consensus       239 r~Hq~~~~G~~~~~~~~~iTvfSa~ny~~~~~N~  272 (309)
T 2ie4_C          239 RAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQ  272 (309)
T ss_dssp             ECCSCCTEEEEEETTTTEEEECCCSSGGGTSCCE
T ss_pred             ecCcceeCCEEEecCCeEEEEECCcccccCCCCe
Confidence            9999999999999999999999999999999984

>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase, toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN; 2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3

Probab=100.00  E-value=5.8e-61  Score=449.34  Aligned_cols=246  Identities=40%  Similarity=0.828  Sum_probs=229.5

Q ss_pred             HHHHHHHhhc--------ccCCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCC
Q 014212          178 VKKMMDDFKN--------QKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSE  249 (429)
Q Consensus       178 l~~li~~l~~--------~~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~  249 (429)
                      ++.+++.+..        ...++++++..+|.+++++|.++|+++++..+    ++|+|||||++++|.++|+..++++.
T Consensus         9 ~d~~i~~l~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~e~~l~~~~~~----i~viGDIHG~~~~L~~ll~~~g~~~~   84 (330)
T 1fjm_A            9 LDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPE   84 (330)
T ss_dssp             HHHHHHHHHHTTTTCTTCCCCCCHHHHHHHHHHHHHHHHHSCSEEEECSS----EEEECBCTTCHHHHHHHHHHHCSTTS
T ss_pred             HHHHHHHHHhccccCCcccCCCCHHHHHHHHHHHHHHHHhCCCeEeecCc----eEEecCCCCCHHHHHHHHHHhCCCCc
Confidence            4555655544        24689999999999999999999999999876    99999999999999999999998765


Q ss_pred             CCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccchHHHHHHHHHhccCcccc
Q 014212          250 ENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAH  329 (429)
Q Consensus       250 ~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~  329 (429)
                      . .+||+|||||||++|+||+.+|+++|+.+|+++++||||||.+.++..|||.+|+.++|+..+|+.+.+||++||+++
T Consensus        85 ~-~~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~~l~~~~gf~~e~~~~y~~~l~~~~~~~f~~LPl~~  163 (330)
T 1fjm_A           85 S-NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAA  163 (330)
T ss_dssp             S-CEEECSCCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSSHHHHHHHSHHHHHHHHSCHHHHHHHHHHHTTCCCEE
T ss_pred             c-eEEeCCCcCCCCCChHHHHHHHHHhhhhcCCceEEecCCchHhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCceE
Confidence            5 599999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCeEEEEecCccCCCCCCccccccccCCCCCCCCCcccccccCCCCCC-CCCCCCCCCCcEEE---------------
Q 014212          330 VLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPL-PGRGPSKRGVGLSF---------------  393 (429)
Q Consensus       330 ~~~~~~~~vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~-~~~~~~~~~~~~~~---------------  393 (429)
                      +++++++|||||+ +|...++++|+.+.|+.++++.++++|+|||||... .+|.++.||.|+.|               
T Consensus       164 ~i~~~i~~vHgGl-~p~~~~l~qi~~i~r~~e~~~~g~~~dlLWsdp~~~~~~w~~~~rG~~~~fG~~~~~~fl~~~~l~  242 (330)
T 1fjm_A          164 IVDEKIFCCHGGL-SPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDLD  242 (330)
T ss_dssp             EETTTEEEESSCC-CTTCSCHHHHHHCCSSCCCCSSSHHHHHHHCEECTTCSSEEECTTSSSEEECHHHHHHHHHHHTCS
T ss_pred             EEcCcEEEEccCC-CcccCCHHHHhhhhcCccCcccchHHHHHhcCCccccCCcCcccCCCceeeChHHHHHHHHhCCCc
Confidence            9999999999999 889899999999999999999999999999999865 68889999999888               


Q ss_pred             -EEeeccccccCceeecCCeEEEEcCCCCCCCcCCCC
Q 014212          394 -VVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQVTKL  429 (429)
Q Consensus       394 -iir~h~~~~~g~~~~~~~~~~t~fs~~~y~~~~~n~  429 (429)
                       ||||||++++||+++++++|||||||||||+.++|+
T Consensus       243 liir~Hq~v~~Gy~~~~~~~lvTvfSapnY~~~~~N~  279 (330)
T 1fjm_A          243 LICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNA  279 (330)
T ss_dssp             EEEECCSCCTTSEEEETTTTEEEEBCCTTCCSSSCCC
T ss_pred             eEecccccccCCeEEccCCeEEEEeCCcccccCCCCc
Confidence             999999999999999999999999999999999985

>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle, hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A

Probab=100.00  E-value=1.3e-36  Score=289.78  Aligned_cols=212  Identities=19%  Similarity=0.238  Sum_probs=159.0

Q ss_pred             HhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCC-------CCCCeEEccccccCCCCcHHHHHHHHHhhh-
Q 014212          207 LRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPS-------EENPYLFNGDFVDRGSFSVEVILTLFAFKC-  278 (429)
Q Consensus       207 l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~-------~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~-  278 (429)
                      +..+|.++...    .+++++||+||++++|.++|+..+.++       ..+.+||+|||||||++|.||+.+|++++. 
T Consensus        60 ~~~~~~~~~~~----~~i~vigDiHG~~~~l~~ll~~~~~~~~~~~~~~~~d~~v~lGD~vdrG~~s~evl~~l~~l~~~  135 (342)
T 2z72_A           60 KQIMPDTYLGI----KKVVALSDVHGQYDVLLTLLKKQKIIDSDGNWAFGEGHMVMTGDIFDRGHQVNEVLWFMYQLDQQ  135 (342)
T ss_dssp             TSCCCSEECCC----CEEEEECCCTTCHHHHHHHHHHTTSBCTTSCBCCTTCEEEECSCCSSSSSCHHHHHHHHHHHHHH
T ss_pred             cccCcceecCC----CCEEEEECCCCCHHHHHHHHHhcCCCcccccccCCCCEEEEECCCcCCCCCHHHHHHHHHHHHHH
Confidence            55667776543    459999999999999999999988654       346799999999999999999999999986 


Q ss_pred             --hCCCeEEEecCCcccccchh-------hccchhhhhcccchHHHH---HHHHHhccCcccceecCeEEEEecCccCCC
Q 014212          279 --MCPSAIYLSRGNHESKSMNK-------IYGFEGEVRSKLSETFVE---LFAEVFCCLPLAHVLNQKVFVVHGGLFSVD  346 (429)
Q Consensus       279 --~~p~~~~~lrGNhe~~~~~~-------~~~~~~~~~~~~~~~~~~---~~~~~~~~lp~~~~~~~~~~~vH~gi~~~~  346 (429)
                        .+|.++++||||||.+.++.       .|++..++.......+|+   ...+||+.||++++++ +++|||||+ +|.
T Consensus       136 ~~~~~~~v~~v~GNHE~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~lP~~~~~~-~~~~vHgGl-~p~  213 (342)
T 2z72_A          136 ARDAGGMVHLLMGNHEQMVLGGDLRYVHQRYDIATTLINRPYNKLYSADTEIGQWLRSKNTIIKIN-DVLYMHGGI-SSE  213 (342)
T ss_dssp             HHHTTCEEEECCCHHHHHHHHTCCTTSCTTHHHHHHHTTSCGGGGGSTTBHHHHHHHTCCSEEEET-TEEEESSCC-CHH
T ss_pred             HhhCCCeEEEEecCCcHHHhhCcccccccccchHHHHhcccHHHHHHHhHHHHHHHhhCCeEEEEC-CEEEEECCC-Chh
Confidence              78999999999999988763       233333332222233433   5678999999999987 799999999 665


Q ss_pred             C----CCccccccccCCC-----CCCCCCcccccccCCCCCCCCCCC--CCCC----------CcEEEEEeeccccccCc
Q 014212          347 G----VKLSDIKTIDRFC-----EPPEEGLMCELLWSDPQPLPGRGP--SKRG----------VGLSFVVRSHEVKDEGY  405 (429)
Q Consensus       347 ~----~~~~~i~~~~r~~-----~~~~~~~~~~~lw~dp~~~~~~~~--~~~~----------~~~~~iir~h~~~~~g~  405 (429)
                      .    .++++|+.+.|+.     +++..+..+++|||||........  ..-|          .+...|||||+++.+ +
T Consensus       214 ~~~~~~~l~~i~~~~r~~~~~~~~~~~~~~~~~~lwsd~~~~w~R~~~~~~fg~~~~~~fl~~~~~~~IV~GHt~~~~-~  292 (342)
T 2z72_A          214 WISRELTLDKANALYRANVDASKKSLKADDLLNFLFFGNGPTWYRGYFSETFTEAELDTILQHFNVNHIVVGHTSQER-V  292 (342)
T ss_dssp             HHHTTCCHHHHHHHHHHHTTSCHHHHHHSHHHHHHHSTTSTTTCCGGGSTTCCHHHHHHHHHHHTCSEEEECSSCCSS-C
T ss_pred             hcccCCCHHHHHHHhhhhccccccccccCHHHHhccCCCCCCCcCCcccccCChHHHHHHHHHCCCcEEEECCCcccc-h
Confidence            4    3899999988862     112235678999999865321111  0011          133459999999866 6


Q ss_pred             eeecCCeEEEEcCCCCCCCc
Q 014212          406 EIEHDGKLITVFSAPNYCDQ  425 (429)
Q Consensus       406 ~~~~~~~~~t~fs~~~y~~~  425 (429)
                      ...+++++|||||+++|.|.
T Consensus       293 ~~~~~~~~i~Idsg~~~gg~  312 (342)
T 2z72_A          293 LGLFHNKVIAVDSSIKVGKS  312 (342)
T ss_dssp             EEETTTTEEECCCCGGGSSC
T ss_pred             hhhcCCCEEEEECCCCCCCc
Confidence            67789999999999999654

>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture, hydrolase; 2.72A {Shigella flexneri 2A}

Probab=99.97  E-value=1.6e-31  Score=246.88  Aligned_cols=179  Identities=19%  Similarity=0.297  Sum_probs=145.6

Q ss_pred             ceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccc
Q 014212          223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGF  302 (429)
Q Consensus       223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~  302 (429)
                      +++++||+||++.+|.++++..+.++..+.+||+|||||||++|.||+.+|+++    |..+++|+||||.+.++..+||
T Consensus         2 ~i~vigDiHG~~~~l~~ll~~~~~~~~~d~~v~lGD~vdrG~~s~~~l~~l~~l----~~~~~~v~GNHe~~~l~~~~g~   77 (280)
T 2dfj_A            2 ATYLIGDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSL----GDSVRLVLGNHDLHLLAVFAGI   77 (280)
T ss_dssp             CEEEECCCCSCHHHHHHHHHHTTCCTTTCEEEECSCCSSSSSCHHHHHHHHHHT----GGGEEECCCHHHHHHHHHHTTS
T ss_pred             eEEEEecCCCCHHHHHHHHHHhCCCCCCCEEEEeCCcCCCCCccHHHHHHHHhC----CCceEEEECCCcHHHHhHhcCC
Confidence            489999999999999999999988656678999999999999999999999987    4589999999999999998988


Q ss_pred             hhhhhccc-----chHHHHHHHHHhccCcccceecC-eEEEEecCccCCCCCCccccccccCCCC----CCCCCcccccc
Q 014212          303 EGEVRSKL-----SETFVELFAEVFCCLPLAHVLNQ-KVFVVHGGLFSVDGVKLSDIKTIDRFCE----PPEEGLMCELL  372 (429)
Q Consensus       303 ~~~~~~~~-----~~~~~~~~~~~~~~lp~~~~~~~-~~~~vH~gi~~~~~~~~~~i~~~~r~~~----~~~~~~~~~~l  372 (429)
                      ........     .......+.+||+.||+++.+++ +++|||||+ +|.. ++++++.+.|+.+    .++.+.++++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lP~~~~~~~~~~~~vHaGi-~p~~-~l~~~~~~~r~~e~~l~~~~~~~~~~~l  155 (280)
T 2dfj_A           78 SRNKPKDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMAHAGI-TPQW-DLQTAKECARDVEAVLSSDSYPFFLDAM  155 (280)
T ss_dssp             SCCCGGGCCHHHHTSTTHHHHHHHHHTSCSEEEETTTTEEEESSCC-CTTC-CHHHHHHHHHHHHHHHHSTTHHHHHHHT
T ss_pred             cccchhhhHHHHhhhhHHHHHHHHHHhCCcEEEECCCeEEEEeCCC-CcCc-CHHHHHHHHHHHHHhhcCCcHHHHHHHh
Confidence            64321111     12245667899999999988887 999999999 6665 7888888877642    44556788999


Q ss_pred             cCCCCCCCCCCCCCCCCc--------------------EEEEEeec-cccccCceeec
Q 014212          373 WSDPQPLPGRGPSKRGVG--------------------LSFVVRSH-EVKDEGYEIEH  409 (429)
Q Consensus       373 w~dp~~~~~~~~~~~~~~--------------------~~~iir~h-~~~~~g~~~~~  409 (429)
                      ||||.  .+|.++.||.+                    +.|++|+| +.+++||...+
T Consensus       156 ~~d~~--~~w~~~~~G~~r~~~~~~~~tr~rf~~~~g~l~~~~r~~~~~~~~g~~~w~  211 (280)
T 2dfj_A          156 YGDMP--NNWSPELRGLGRLRFITNAFTRMRFCFPNGQLDMYSKESPEEAPAPLKPWF  211 (280)
T ss_dssp             TCSCC--CSCCTTCCHHHHHHHHHHHHHTCCEEETTBEEESSCCSCGGGCCSSCEEGG
T ss_pred             cCCCC--CCcCCCCCCceeEEEeccHHHHHHHhhcCCcEeEEeccChhhcCccccchh
Confidence            99985  56788888866                    45688888 77788887665

>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine tetraphosphatase, monomer, PSI- 2, protein structure initiative, nysgrc; 2.05A {Trypanosoma brucei}

Probab=99.89  E-value=4.9e-24  Score=195.70  Aligned_cols=169  Identities=18%  Similarity=0.253  Sum_probs=115.5

Q ss_pred             ceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccc
Q 014212          223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGF  302 (429)
Q Consensus       223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~  302 (429)
                      ++.++||+||++..|.++++..+..+..+.+||+||+||||++|.+++.+|..+      .+++|+||||.+.++..+++
T Consensus        20 ~i~visDiHg~~~~l~~~l~~~~~~~~~d~ii~~GD~vd~g~~~~~~l~~l~~~------~~~~v~GNHd~~~~~~~~~~   93 (262)
T 2qjc_A           20 RVIIVGDIHGCRAQLEDLLRAVSFKQGSDTLVAVGDLVNKGPDSFGVVRLLKRL------GAYSVLGNHDAKLLKLVKKL   93 (262)
T ss_dssp             CEEEECCCTTCHHHHHHHHHHHTCCTTTSEEEECSCCSSSSSCHHHHHHHHHHH------TCEECCCHHHHHHHHHHHCC
T ss_pred             eEEEEeCCCCCHHHHHHHHHHHhccCCCCEEEEecCCCCCCCCHHHHHHHHHHC------CCEEEeCcChHHHHhhhcCC
Confidence            599999999999999999999887655467999999999999999999999864      37899999999988877776


Q ss_pred             hhh-hhcccc---------hHHHHHHHHHhccCcccceec-CeEEEEecCccCCCCC----Cccc---cccccCCCCCCC
Q 014212          303 EGE-VRSKLS---------ETFVELFAEVFCCLPLAHVLN-QKVFVVHGGLFSVDGV----KLSD---IKTIDRFCEPPE  364 (429)
Q Consensus       303 ~~~-~~~~~~---------~~~~~~~~~~~~~lp~~~~~~-~~~~~vH~gi~~~~~~----~~~~---i~~~~r~~~~~~  364 (429)
                      ..+ |..+++         ..+.....+||+.||+++.++ .+++|||||+ +|...    +.++   ++.+.++.+.+.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lP~~~~i~~~~i~~vHgg~-~p~~~~~~~~~~~l~~ir~~~~~~~~~~  172 (262)
T 2qjc_A           94 GKKECLKGRDAKSSLAPLAQSIPTDVETYLSQLPHIIRIPAHNVMVAHAGL-HPQRPVDRQYEDEVTTMRNLIEKEQEAT  172 (262)
T ss_dssp             -------------CHHHHHHHCCHHHHHHHHTCCSEEEEGGGTEEEESSCC-CTTSCGGGCCHHHHHHCCEEEEC-----
T ss_pred             CccccccccchHHHHHHHHhhhhHHHHHHHHcCCcEEEECCCcEEEEECCC-CCCCCcccCCHHHHhhhhhcccccccCC
Confidence            543 333332         223456779999999999886 5999999999 55431    1222   233322212122


Q ss_pred             CCcccccccCCCCCC--CCCCCCCCCCcEEEEEeeccccc
Q 014212          365 EGLMCELLWSDPQPL--PGRGPSKRGVGLSFVVRSHEVKD  402 (429)
Q Consensus       365 ~~~~~~~lw~dp~~~--~~~~~~~~~~~~~~iir~h~~~~  402 (429)
                      .+.  .++|+||...  ..|..+.+|.  .+||-||+.+.
T Consensus       173 ~G~--~~~~~d~~~~~~~~w~~~~~g~--~~vvfGHt~~~  208 (262)
T 2qjc_A          173 GGV--TLTATEETNDGGKPWASMWRGP--ETVVFGHDARR  208 (262)
T ss_dssp             --C--CEEEESCSTTCCEEGGGGCCCS--SEEEECCCGGG
T ss_pred             CCc--cccccCCCCcCCCChhhccCCC--CEEEECCCccc
Confidence            222  4789998432  2444555554  34789999763

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.87  E-value=1e-20  Score=154.07  Aligned_cols=122  Identities=30%  Similarity=0.544  Sum_probs=116.0

Q ss_pred             CCCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 014212            5 ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG   84 (429)
Q Consensus         5 ~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~   84 (429)
                      ..+..+|+.++++..+|+.++++|+|++|++.|+++++++|.++.+|.++|.++..+|++++|+..|+++++++|+++.+
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a   83 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG   83 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence            44567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014212           85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE  126 (429)
Q Consensus        85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~  126 (429)
                      |+++|.++..+|++++|+..|+++++++|++++++..++.++
T Consensus        84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            999999999999999999999999999999999998888763

>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr protein phosphatase, ppase, manganese, sulfate, viral protein; 2.15A {Enterobacteria phage lambda} SCOP: d.159.1.3

Probab=99.83  E-value=1e-20  Score=169.67  Aligned_cols=168  Identities=22%  Similarity=0.284  Sum_probs=117.2

Q ss_pred             eeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCccc
Q 014212          214 VDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHES  293 (429)
Q Consensus       214 ~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~  293 (429)
                      ..+..+...++.++||+||++.+|.++++..+.++..+.++|+||+||||++|.+++.+|..      ..+++++||||.
T Consensus         5 ~~~~~~~~~~i~visDiHg~~~~l~~~l~~~~~~~~~d~~i~~GD~~~~g~~~~~~~~~l~~------~~~~~v~GNhd~   78 (221)
T 1g5b_A            5 EKIDGSKYRNIWVVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECLELITF------PWFRAVRGNHEQ   78 (221)
T ss_dssp             EEEEGGGCSCEEEECCCTTCHHHHHHHHHHHTCCTTTCEEEECSCCSSSSSCHHHHHGGGGS------TTEEECCCHHHH
T ss_pred             eecCCCCCceEEEEEcCCCCHHHHHHHHHHccCCCCCCEEEEeCCccCCCCChHHHHHHHhc------CCEEEEccCcHH
Confidence            34444555679999999999999999999988765566799999999999999999988643      368999999998


Q ss_pred             ccchhhccchh---------hhhccc---chHHHHHHHHHhccCccccee---cCeEEEEecCccCCCCCCccccccccC
Q 014212          294 KSMNKIYGFEG---------EVRSKL---SETFVELFAEVFCCLPLAHVL---NQKVFVVHGGLFSVDGVKLSDIKTIDR  358 (429)
Q Consensus       294 ~~~~~~~~~~~---------~~~~~~---~~~~~~~~~~~~~~lp~~~~~---~~~~~~vH~gi~~~~~~~~~~i~~~~r  358 (429)
                      +.++..+++..         .+...+   ...+.+.+.+||+.||.++.+   +.+++|||||+| +...      ...+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lP~~~~~~~~~~~i~~vHgg~~-~~~~------~~~~  151 (221)
T 1g5b_A           79 MMIDGLSERGNVNHWLLNGGGWFFNLDYDKEILAKALAHKADELPLIIELVSKDKKYVICHADYP-FDEY------EFGK  151 (221)
T ss_dssp             HHHHHHSTTCCCHHHHTTTGGGGGGSCHHHHHHHHHHHHHHTTCCSEEEEEETTEEEEECSSCCC-SSBC------CTTC
T ss_pred             HHHhhhccCCcHHHHHHcCCCchhhcCHHHHHHHHHHHHHHHhCCcEEEEEecCCeEEEEecCCC-hhhc------ccCC
Confidence            87764433211         111111   235678889999999999876   569999999984 3211      1112


Q ss_pred             CCCCCCCCcccccccCCCCCC---CCCCCCCCCCcEEEEEeeccccc
Q 014212          359 FCEPPEEGLMCELLWSDPQPL---PGRGPSKRGVGLSFVVRSHEVKD  402 (429)
Q Consensus       359 ~~~~~~~~~~~~~lw~dp~~~---~~~~~~~~~~~~~~iir~h~~~~  402 (429)
                      +.      ...+++|++|...   .++.++.++..  .+|-||+.+.
T Consensus       152 ~~------~~~~~lw~~~~~~~~~~~~~~~~~~~~--~vv~GHth~~  190 (221)
T 1g5b_A          152 PV------DHQQVIWNRERISNSQNGIVKEIKGAD--TFIFGHTPAV  190 (221)
T ss_dssp             CC------CHHHHHHCCHHHHHHHTTCCCCCBTSS--EEEECSSCCS
T ss_pred             Cc------cccccccCchhhhhhccccCCcccCCC--EEEECCCCCc
Confidence            21      1357899986421   23333334443  4788999865

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.80  E-value=1.5e-18  Score=180.94  Aligned_cols=145  Identities=23%  Similarity=0.334  Sum_probs=136.1

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   87 (429)
                      ...|+.++++.++|.++.++|++++|++.|++|++++|+++.++.++|.++.++|++++|+.+|++|++++|+++.+|++
T Consensus         3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n   82 (723)
T 4gyw_A            3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN   82 (723)
T ss_dssp             ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCC
Q 014212           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA  166 (429)
Q Consensus        88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~  166 (429)
                      +|.++..+|++++|+++|++|++++|+++.++.++|.++..+|+  +++|+..++            ++++++|++..+
T Consensus        83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~--~~eAi~~~~------------~Al~l~P~~~~a  147 (723)
T 4gyw_A           83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN--IPEAIASYR------------TALKLKPDFPDA  147 (723)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCSCCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH------------HHHHhCCCChHH
Confidence            99999999999999999999999999999999999999999888  788887777            889999886444

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.78  E-value=6.4e-18  Score=141.79  Aligned_cols=112  Identities=13%  Similarity=0.093  Sum_probs=108.7

Q ss_pred             CCCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 014212            5 ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG   84 (429)
Q Consensus         5 ~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~   84 (429)
                      +....+|+++.+++.+|..++..|++++|+..|+++++++|+++.+|+++|.++..+|++++|+.+|+++++++|+++.+
T Consensus        27 ~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~  106 (151)
T 3gyz_A           27 DINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTP  106 (151)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHH
Confidence            45667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 014212           85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP  116 (429)
Q Consensus        85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~  116 (429)
                      |+++|.+|..+|++++|+.+|++++++.|+.+
T Consensus       107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          107 VFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            99999999999999999999999999999876

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.78  E-value=1.7e-18  Score=145.36  Aligned_cols=124  Identities=13%  Similarity=0.079  Sum_probs=115.5

Q ss_pred             CcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 014212            7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY   86 (429)
Q Consensus         7 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   86 (429)
                      ...+|+.+..++.+|.+|+..|+|++|++.|+++++++|+++.+|.++|.++..+|++++|+.+|+++++++|+++.+++
T Consensus        24 ~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  103 (150)
T 4ga2_A           24 TPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVL  103 (150)
T ss_dssp             SCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014212           87 RRGAAYLAMGKFKEALKD-FQQVKKLSPNDPDAAQKVKECEKAVK  130 (429)
Q Consensus        87 ~la~~~~~~g~~~eA~~~-~~~al~~~p~~~~~~~~l~~~~~~~~  130 (429)
                      ++|.+|..+|++++|... +++|++++|+++.++..++.++...|
T Consensus       104 ~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A          104 KIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            999999999999887765 59999999999999988887765443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.76  E-value=9.3e-18  Score=149.77  Aligned_cols=142  Identities=19%  Similarity=0.218  Sum_probs=81.2

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----------hCHHHHHHHHHHHHHh
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL-----------EEYGSAIQDASKAIEI   77 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-----------g~~~~A~~~~~~al~~   77 (429)
                      .+|..+.+++.+|.++...|++++|+..|+++++++|+++.++.++|.++..+           |++++|+..+++++++
T Consensus        34 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  113 (217)
T 2pl2_A           34 ENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV  113 (217)
T ss_dssp             TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh
Confidence            34455555555555555555555555555555555555555555555555555           5555555555555555


Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCcccccccccccccccc
Q 014212           78 DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSI  157 (429)
Q Consensus        78 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l  157 (429)
                      +|+++.+++.+|.++..+|++++|+..|+++++++ +++.++..++.++...|+  +++|+..++            +++
T Consensus       114 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~--~~~A~~~~~------------~al  178 (217)
T 2pl2_A          114 NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGR--LDEALAQYA------------KAL  178 (217)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTC--HHHHHHHHH------------HHH
T ss_pred             CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCC--HHHHHHHHH------------HHH
Confidence            55555555555555555555555555555555555 555555555555555554  444444444            788


Q ss_pred             ccCCCCCC
Q 014212          158 EVEPQYSG  165 (429)
Q Consensus       158 ~~~~~~~~  165 (429)
                      +.+|....
T Consensus       179 ~~~P~~~~  186 (217)
T 2pl2_A          179 EQAPKDLD  186 (217)
T ss_dssp             HHSTTCHH
T ss_pred             HhCCCChH
Confidence            88776543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.76  E-value=1.7e-17  Score=134.25  Aligned_cols=118  Identities=27%  Similarity=0.433  Sum_probs=112.8

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 014212           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA   90 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~   90 (429)
                      |..+..+..+|..++..|+|++|+..|+++++++|+++.++.++|.++..+|++++|+..|+++++++|+++.+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHH
Q 014212           91 AYLAMGKFKEALKDFQQVKKLS------PNDPDAAQKVKECEKA  128 (429)
Q Consensus        91 ~~~~~g~~~eA~~~~~~al~~~------p~~~~~~~~l~~~~~~  128 (429)
                      ++..+|++++|+..|+++++++      |+++.++..+..+...
T Consensus        81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            9999999999999999999999      9999998888876543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.76  E-value=4.4e-18  Score=150.85  Aligned_cols=130  Identities=17%  Similarity=0.157  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHhhCHHHHHHHHHHHHH
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYAN----------------RAFAHTKLEEYGSAIQDASKAIE   76 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------lg~~~~~~g~~~~A~~~~~~al~   76 (429)
                      .++.+...|..++..|++++|+..|+++++.+|+++.+++.                +|.++..+|++++|+..|+++++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999                99999999999999999999999


Q ss_pred             hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           77 IDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        77 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      ++|+++.+++.+|.++..+|++++|+..|+++++++|+++.++..+|.++...+..+...+...+.
T Consensus        83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~  148 (208)
T 3urz_A           83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYK  148 (208)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998777655454444333

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.76  E-value=9.7e-19  Score=156.18  Aligned_cols=130  Identities=19%  Similarity=0.272  Sum_probs=124.0

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 014212           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA   90 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~   90 (429)
                      |.++.+++.+|..+...|++++|+..|+++++.+|+++.+++++|.++..+|++++|+..|+++++++|+++.+++.+|.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   81 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE   81 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            56678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           91 AYLAM-----------GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        91 ~~~~~-----------g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      ++..+           |++++|+..|+++++++|+++.++..++.++...++  +++|+..++
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~--~~~A~~~~~  142 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGE--RDKAEASLK  142 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC--hHHHHHHHH
Confidence            99999           999999999999999999999999999999999888  778887777

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.75  E-value=5e-18  Score=146.79  Aligned_cols=140  Identities=16%  Similarity=0.237  Sum_probs=130.5

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA   91 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~   91 (429)
                      +++.+++.+|..+..+|++++|++.|+++++++|+++.++..+|.++..+|++++|+..+.+++...|+++.++..+|.+
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA   82 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCC
Q 014212           92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSG  165 (429)
Q Consensus        92 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~  165 (429)
                      +...+++++|...+.++++++|+++.++..+|.++..+++  +++|+..++            ++++++|....
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~------------~~l~~~p~~~~  142 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE--HDKAIEAYE------------KTISIKPGFIR  142 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCTTCHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC--chhHHHHHH------------HHHHhcchhhh
Confidence            9999999999999999999999999999999999998887  788887777            78888886543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.75  E-value=4.5e-17  Score=136.25  Aligned_cols=124  Identities=17%  Similarity=0.261  Sum_probs=115.2

Q ss_pred             CcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 014212            7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY   86 (429)
Q Consensus         7 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   86 (429)
                      ...+|.++.+++.+|..++..|++++|+..|+++++.+|+++.+|+++|.++..+|++++|+.+|++++.++|+++.+++
T Consensus        14 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~   93 (148)
T 2vgx_A           14 NEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF   93 (148)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred             HcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014212           87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK  130 (429)
Q Consensus        87 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~  130 (429)
                      ++|.+|..+|++++|+..|+++++++|+++........+...+.
T Consensus        94 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~  137 (148)
T 2vgx_A           94 HAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLE  137 (148)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHH
Confidence            99999999999999999999999999998877655555554444

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.75  E-value=6.4e-17  Score=134.08  Aligned_cols=127  Identities=19%  Similarity=0.257  Sum_probs=119.0

Q ss_pred             CCCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 014212            5 ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG   84 (429)
Q Consensus         5 ~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~   84 (429)
                      +....+|..+..++.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+.+|++++.++|+++.+
T Consensus         9 ~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~   88 (142)
T 2xcb_A            9 MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRF   88 (142)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHH
Confidence            45667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212           85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (429)
Q Consensus        85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  131 (429)
                      ++.+|.++..+|++++|+..|+++++++|+++........+...+..
T Consensus        89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~  135 (142)
T 2xcb_A           89 PFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEA  135 (142)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998877777666665554

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.74  E-value=8.6e-17  Score=136.59  Aligned_cols=122  Identities=30%  Similarity=0.425  Sum_probs=114.5

Q ss_pred             CcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 014212            7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY   86 (429)
Q Consensus         7 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   86 (429)
                      ....+..+..++.+|..++..|+|++|+..|+++++++|+++.+++++|.++..+|++++|+.+|+++++++|+++.+|+
T Consensus         4 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   83 (164)
T 3sz7_A            4 SMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS   83 (164)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cchhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014212           87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA  128 (429)
Q Consensus        87 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~  128 (429)
                      ++|.+|..+|++++|+.+|+++++++|+++.++...+.....
T Consensus        84 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  125 (164)
T 3sz7_A           84 RLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK  125 (164)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            999999999999999999999999999999876666555443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.74  E-value=6.8e-17  Score=131.40  Aligned_cols=114  Identities=26%  Similarity=0.380  Sum_probs=104.0

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh------
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP------   82 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------   82 (429)
                      ..++.+.++.++|+.++++|+|++|+..|++|++++|+++.+|.++|.+|..+|++++|+..|+++++++|++.      
T Consensus         3 ~~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~   82 (127)
T 4gcn_A            3 AMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI   82 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999988763      


Q ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014212           83 -KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK  123 (429)
Q Consensus        83 -~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~  123 (429)
                       .+++++|.++..+|++++|+++|+++++..|+ ++....+.
T Consensus        83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~  123 (127)
T 4gcn_A           83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVK  123 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence             58999999999999999999999999999885 55544443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.74  E-value=8.1e-17  Score=155.99  Aligned_cols=149  Identities=14%  Similarity=0.098  Sum_probs=137.1

Q ss_pred             CCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHhCCCChHH
Q 014212            6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE-YGSAIQDASKAIEIDPRYPKG   84 (429)
Q Consensus         6 ~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~   84 (429)
                      ....+|..+.++..+|.++...|++++|+..|+++++++|++..+|+++|.++..+|+ +++|+.+|+++++++|++..+
T Consensus        89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a  168 (382)
T 2h6f_A           89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV  168 (382)
T ss_dssp             EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence            3456899999999999999999999999999999999999999999999999999997 999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCC
Q 014212           85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYS  164 (429)
Q Consensus        85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~  164 (429)
                      |+++|.++..+|++++|+.+|+++++++|++..++..++.++..+++  +++|+..++            ++++++|.+.
T Consensus       169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~--~~eAl~~~~------------~al~l~P~~~  234 (382)
T 2h6f_A          169 WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL--WDNELQYVD------------QLLKEDVRNN  234 (382)
T ss_dssp             HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--CTTHHHHHH------------HHHHHCTTCH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCC--hHHHHHHHH------------HHHHhCCCCH
Confidence            99999999999999999999999999999999999999999998886  445555554            9999999876


Q ss_pred             CCcc
Q 014212          165 GARI  168 (429)
Q Consensus       165 ~~~~  168 (429)
                      .+..
T Consensus       235 ~a~~  238 (382)
T 2h6f_A          235 SVWN  238 (382)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.73  E-value=1.3e-18  Score=146.03  Aligned_cols=133  Identities=15%  Similarity=0.066  Sum_probs=115.5

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Q 014212           19 ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKF   98 (429)
Q Consensus        19 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~   98 (429)
                      .+|..+..+|++++|++.+++++..+|+++.+++.+|.+|+++|++++|+++|+++++++|+++.+|+.+|.+|..+|++
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence            36888889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCC
Q 014212           99 KEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYS  164 (429)
Q Consensus        99 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~  164 (429)
                      ++|+.+|+++++++|+++.++..++.++...++  +.+|...           .+.++++++|.+.
T Consensus        82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--~~~aa~~-----------~~~~al~l~P~~~  134 (150)
T 4ga2_A           82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDV--TDGRAKY-----------WVERAAKLFPGSP  134 (150)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS--SSSHHHH-----------HHHHHHHHSTTCH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--hHHHHHH-----------HHHHHHHhCcCCH
Confidence            999999999999999999999999999988775  2222221           2247888888753

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.72  E-value=8.5e-17  Score=138.96  Aligned_cols=142  Identities=20%  Similarity=0.284  Sum_probs=134.2

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   87 (429)
                      ..+|+.+.++..+|.++...|++++|+..+++++...|+++.++..+|.++...++++.|...+.+++.++|.+..++..
T Consensus        33 ~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~  112 (184)
T 3vtx_A           33 KADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYK  112 (184)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHH
Confidence            45788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY  163 (429)
Q Consensus        88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~  163 (429)
                      +|.++..+|++++|++.|+++++++|+++.++..+|.++..+++  +++|+..++            ++++++|..
T Consensus       113 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~------------~al~~~p~~  174 (184)
T 3vtx_A          113 LGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGL--RDEAVKYFK------------KALEKEEKK  174 (184)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHTTHHH
T ss_pred             HHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCC--HHHHHHHHH------------HHHhCCccC
Confidence            99999999999999999999999999999999999999999988  788888777            677777653

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.72  E-value=1e-16  Score=135.87  Aligned_cols=124  Identities=24%  Similarity=0.349  Sum_probs=114.2

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHhhCHHHHHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL------------------NSQNAVYYANRAFAHTKLEEYGSAIQ   69 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~lg~~~~~~g~~~~A~~   69 (429)
                      .+....+..+..+|+.+++.|+|++|+..|++++++                  +|.+..++.++|.|+..+|++++|+.
T Consensus         5 ~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~   84 (162)
T 3rkv_A            5 DDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEE   84 (162)
T ss_dssp             ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            455678899999999999999999999999999999                  77778999999999999999999999


Q ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHh
Q 014212           70 DASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP-DAAQKVKECEKAVKK  131 (429)
Q Consensus        70 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~  131 (429)
                      ++++++.++|+++.+|+++|.+|..+|++++|+..|+++++++|+++ .+...++.+...+..
T Consensus        85 ~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~  147 (162)
T 3rkv_A           85 TSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE  147 (162)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999 678888887766664

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.72  E-value=7e-17  Score=144.63  Aligned_cols=136  Identities=22%  Similarity=0.279  Sum_probs=121.7

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNS-QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA   91 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~   91 (429)
                      ++..++.+|..++..|++++|+..|+++++++| .+..+++++|.++..+|++++|+..|++++..+|+++.+++.+|.+
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   85 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA   85 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence            458999999999999999999999999999999 8999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCC
Q 014212           92 YLAMGKFKEALKDFQQVKKLSPNDPDA-------AQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQ  162 (429)
Q Consensus        92 ~~~~g~~~eA~~~~~~al~~~p~~~~~-------~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~  162 (429)
                      |..+|++++|+..|+++++++|+++..       +..+|.++...++  +++|+..++            ++++.+|.
T Consensus        86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~--~~~A~~~~~------------~al~~~p~  149 (228)
T 4i17_A           86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGN--IEKAEENYK------------HATDVTSK  149 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHTTSSCH
T ss_pred             HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhcc--HHHHHHHHH------------HHHhcCCC
Confidence            999999999999999999999999944       6666666555554  555555555            88888776

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.72  E-value=2.6e-17  Score=137.10  Aligned_cols=120  Identities=21%  Similarity=0.230  Sum_probs=110.2

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHhhCHHHHHHHHHHHHHh-
Q 014212           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ-------NAV-----YYANRAFAHTKLEEYGSAIQDASKAIEI-   77 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~lg~~~~~~g~~~~A~~~~~~al~~-   77 (429)
                      ...+..+...|+.+++.|+|++|+..|++|++++|+       +..     +|.++|.++..+|+|++|+.+|++|+++ 
T Consensus         8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~   87 (159)
T 2hr2_A            8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF   87 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence            457888999999999999999999999999999999       544     9999999999999999999999999999 


Q ss_pred             ------CCCChHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014212           78 ------DPRYPKGY----YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK  130 (429)
Q Consensus        78 ------~p~~~~~~----~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~  130 (429)
                            +|+++.+|    +++|.++..+|++++|+.+|+++++++|++..+...+..+.....
T Consensus        88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~  150 (159)
T 2hr2_A           88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI  150 (159)
T ss_dssp             HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred             hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence                  99999999    999999999999999999999999999999877766666655444

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.71  E-value=2.7e-17  Score=171.48  Aligned_cols=133  Identities=21%  Similarity=0.267  Sum_probs=124.7

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   87 (429)
                      +.+|+.+.++.++|.++.++|++++|++.|++|++++|+++.+|+++|.++..+|++++|+++|++|++++|+++.+|++
T Consensus        37 ~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~  116 (723)
T 4gyw_A           37 EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSN  116 (723)
T ss_dssp             HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            34788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      +|.+|..+|++++|++.|++|++++|+++.++.+++.++..+++  +++|...++
T Consensus       117 Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~--~~~A~~~~~  169 (723)
T 4gyw_A          117 LASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD--WTDYDERMK  169 (723)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--CTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc--HHHHHHHHH
Confidence            99999999999999999999999999999999999999988887  445544443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.70  E-value=1.3e-15  Score=122.70  Aligned_cols=126  Identities=36%  Similarity=0.578  Sum_probs=119.5

Q ss_pred             CCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 014212            6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY   85 (429)
Q Consensus         6 ~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~   85 (429)
                      ....+|..+..+..+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~   83 (131)
T 2vyi_A            4 GSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAY   83 (131)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212           86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (429)
Q Consensus        86 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  131 (429)
                      +.+|.++..+|++++|+..|+++++++|+++.++..++.++..+++
T Consensus        84 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           84 GRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999887764

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.70  E-value=4.5e-16  Score=126.11  Aligned_cols=126  Identities=32%  Similarity=0.482  Sum_probs=120.1

Q ss_pred             CCCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 014212            5 ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG   84 (429)
Q Consensus         5 ~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~   84 (429)
                      ......|..+.+++.+|..++..|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|+++.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~   86 (133)
T 2lni_A            7 HHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKG   86 (133)
T ss_dssp             TTCCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCCCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHH
Confidence            45667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014212           85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK  130 (429)
Q Consensus        85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~  130 (429)
                      ++.+|.++..+|++++|+..|+++++++|++..++..++.++...+
T Consensus        87 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           87 YTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999998886654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.69  E-value=1.1e-15  Score=128.85  Aligned_cols=135  Identities=53%  Similarity=0.854  Sum_probs=124.8

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   87 (429)
                      ......+..++.+|..++..|++++|+..|+++++.+|.+..++.++|.++...|++++|+..+++++..+|.++.+++.
T Consensus         7 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~   86 (166)
T 1a17_A            7 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR   86 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence            44567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      +|.++..+|++++|+..|+++++++|+++.++..++.+........+++|+..++
T Consensus        87 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  141 (166)
T 1a17_A           87 RAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  141 (166)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            9999999999999999999999999999999977777755555555888888776

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.69  E-value=1.1e-15  Score=145.64  Aligned_cols=125  Identities=30%  Similarity=0.471  Sum_probs=120.7

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhhCHHHHHHHHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---------------AVYYANRAFAHTKLEEYGSAIQDAS   72 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~   72 (429)
                      ...|..+.++..+|..++..|+|++|+..|+++++++|++               ..++.++|.++..+|++++|+.+|+
T Consensus       141 ~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~  220 (336)
T 1p5q_A          141 EEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCN  220 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4478899999999999999999999999999999999999               6999999999999999999999999


Q ss_pred             HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Q 014212           73 KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL  132 (429)
Q Consensus        73 ~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  132 (429)
                      ++++++|+++.+++++|.+|..+|++++|+..|+++++++|+++.++..++.++..+++.
T Consensus       221 ~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~  280 (336)
T 1p5q_A          221 KALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ  280 (336)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998873

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.68  E-value=1.1e-16  Score=155.05  Aligned_cols=151  Identities=10%  Similarity=0.054  Sum_probs=132.0

Q ss_pred             cccHhHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 014212            8 NSSVSRAEELKALANEAFRAKK-YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY   86 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   86 (429)
                      ..+|..+.+|..+|.++...|+ +++|+..|+++++++|++..+|+++|.++..+|++++|+.+|+++++++|++..+|+
T Consensus       125 ~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~  204 (382)
T 2h6f_A          125 ELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQ  204 (382)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHH
T ss_pred             HhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHH
Confidence            4578899999999999999997 999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCC
Q 014212           87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA  166 (429)
Q Consensus        87 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~  166 (429)
                      ++|.++..+|++++|+.+|+++++++|++..++.+++.++..++.. .++|+       ...+...+.++++++|.+..+
T Consensus       205 ~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~-~~eA~-------~~~el~~~~~Al~l~P~~~~a  276 (382)
T 2h6f_A          205 HRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGY-NDRAV-------LEREVQYTLEMIKLVPHNESA  276 (382)
T ss_dssp             HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCS-CSHHH-------HHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc-chHHH-------HHHHHHHHHHHHHHCCCCHHH
Confidence            9999999999999999999999999999999999999998774331 12231       011124455888888886544

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.68  E-value=1.9e-17  Score=138.83  Aligned_cols=120  Identities=13%  Similarity=-0.033  Sum_probs=109.7

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014212           29 KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQV  108 (429)
Q Consensus        29 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a  108 (429)
                      ++-.+-..++++++++|+++.+++.+|.+++++|++++|+..|++++.++|+++.+|+++|.++..+|++++|+.+|+++
T Consensus        17 ~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a   96 (151)
T 3gyz_A           17 DAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVA   96 (151)
T ss_dssp             HHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            33344466788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCC
Q 014212          109 KKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQ  162 (429)
Q Consensus       109 l~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~  162 (429)
                      ++++|+++.+++.+|.++..+|+  +++|+..++            +++++.|+
T Consensus        97 l~l~P~~~~~~~~lg~~~~~lg~--~~eA~~~~~------------~al~l~~~  136 (151)
T 3gyz_A           97 FALGKNDYTPVFHTGQCQLRLKA--PLKAKECFE------------LVIQHSND  136 (151)
T ss_dssp             HHHSSSCCHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCCC
T ss_pred             HhhCCCCcHHHHHHHHHHHHcCC--HHHHHHHHH------------HHHHhCCC
Confidence            99999999999999999999998  788888777            77777664

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.67  E-value=1.6e-15  Score=123.95  Aligned_cols=122  Identities=30%  Similarity=0.430  Sum_probs=112.8

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   88 (429)
                      .++..+..++.+|..++..|++++|+..|+++++.+|+++.++.++|.++..+|++++|+..++++++++|+++.+++.+
T Consensus         4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   83 (137)
T 3q49_B            4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL   83 (137)
T ss_dssp             --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence            45667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHH
Q 014212           89 GAAYLAMGKFKEALKDFQQVKKLSPN-----DPDAAQKVKECEKAVK  130 (429)
Q Consensus        89 a~~~~~~g~~~eA~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~  130 (429)
                      |.++..+|++++|+..|+++++++|+     +..+...+..+.....
T Consensus        84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~  130 (137)
T 3q49_B           84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW  130 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998     7777777777665443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.67  E-value=5.4e-16  Score=138.84  Aligned_cols=152  Identities=16%  Similarity=0.171  Sum_probs=131.3

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh-------HH
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP-------KG   84 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~   84 (429)
                      .+..+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..++++++++|+++       .+
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~  119 (228)
T 4i17_A           40 QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIY  119 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence            55678888999999999999999999999999999999999999999999999999999999999999999       67


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhHHHHHhhcCCc-------------ccccccc
Q 014212           85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPN--DPDAAQKVKECEKAVKKLKFEEAIAVPE-------------SERHSVA  149 (429)
Q Consensus        85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~a~~~~~-------------~~~~~~a  149 (429)
                      |+.+|.++..+|++++|+..|+++++++|+  ++.++..++.++...++..++++.....             .+.+.+|
T Consensus       120 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A  199 (228)
T 4i17_A          120 YLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKA  199 (228)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999  9999999999999888864455444321             1122445


Q ss_pred             ccccccccccCCCC
Q 014212          150 DSIDYQSIEVEPQY  163 (429)
Q Consensus       150 ~~~~~~~l~~~~~~  163 (429)
                      ...+.++++++|+.
T Consensus       200 ~~~~~~a~~l~p~~  213 (228)
T 4i17_A          200 VDYLGEAVTLSPNR  213 (228)
T ss_dssp             HHHHHHHHHHCTTC
T ss_pred             HHHHHHHhhcCCCC
Confidence            55555777776654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.66  E-value=3.2e-15  Score=130.93  Aligned_cols=124  Identities=27%  Similarity=0.400  Sum_probs=118.5

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHhhCHHHHHHHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA----------------VYYANRAFAHTKLEEYGSAIQDA   71 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~lg~~~~~~g~~~~A~~~~   71 (429)
                      ...+..+..+..+|..++..|+|++|+..|++++++.|.++                .++.++|.++..+|++++|+.++
T Consensus        32 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  111 (198)
T 2fbn_A           32 EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA  111 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            34567888999999999999999999999999999999887                89999999999999999999999


Q ss_pred             HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212           72 SKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (429)
Q Consensus        72 ~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  131 (429)
                      ++++.++|+++.+++.+|.++..+|++++|+..|+++++++|+++.++..++.++..+++
T Consensus       112 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  171 (198)
T 2fbn_A          112 SKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE  171 (198)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999988876

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.66  E-value=6.2e-15  Score=116.37  Aligned_cols=115  Identities=31%  Similarity=0.544  Sum_probs=110.5

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA   91 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~   91 (429)
                      +.+..++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++..+|+++.+++.+|.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~   81 (118)
T 1elw_A            2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA   81 (118)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014212           92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE  126 (429)
Q Consensus        92 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~  126 (429)
                      +..+|++++|+..|+++++.+|+++.++..++.+.
T Consensus        82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            99999999999999999999999999998887764

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.66  E-value=2.6e-16  Score=127.82  Aligned_cols=114  Identities=21%  Similarity=0.281  Sum_probs=104.4

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 014212           39 QAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA  118 (429)
Q Consensus        39 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~  118 (429)
                      ++..++|+.+.++.++|.++++.|+|++|+..|+++++++|.++.+|+++|.+|..+|++++|+..|+++++++|+++.+
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a   83 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG   83 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence            45568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCC
Q 014212          119 AQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA  166 (429)
Q Consensus       119 ~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~  166 (429)
                      +..+|.++..+++  +++|+..++            ++++++|.+..+
T Consensus        84 ~~~lg~~~~~~~~--~~~A~~~~~------------~al~l~P~~~~a  117 (126)
T 4gco_A           84 YIRKAACLVAMRE--WSKAQRAYE------------DALQVDPSNEEA  117 (126)
T ss_dssp             HHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCTTCHHH
T ss_pred             HHHHHHHHHHCCC--HHHHHHHHH------------HHHHHCcCCHHH
Confidence            9999999999988  788887777            888888876443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.66  E-value=3.1e-16  Score=163.66  Aligned_cols=146  Identities=15%  Similarity=0.026  Sum_probs=136.7

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   87 (429)
                      ..+|+.+.+++.+|..+...|++++|+..|+++++.+|+++.+|+++|.++..+|++++|+..|+++++++|+++.++++
T Consensus       427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~  506 (681)
T 2pzi_A          427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLA  506 (681)
T ss_dssp             -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHH
T ss_pred             cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            56688899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCCc
Q 014212           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGAR  167 (429)
Q Consensus        88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~  167 (429)
                      +|.++..+|++++ +..|+++++++|+++.++++++.++..+++  +++|+..++            ++++++|.+..++
T Consensus       507 lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~--~~~A~~~~~------------~al~l~P~~~~a~  571 (681)
T 2pzi_A          507 LAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGD--RVGAVRTLD------------EVPPTSRHFTTAR  571 (681)
T ss_dssp             HHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------TSCTTSTTHHHHH
T ss_pred             HHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCC--HHHHHHHHH------------hhcccCcccHHHH
Confidence            9999999999999 999999999999999999999999999888  778888777            8888888776554


Q ss_pred             c
Q 014212          168 I  168 (429)
Q Consensus       168 ~  168 (429)
                      .
T Consensus       572 ~  572 (681)
T 2pzi_A          572 L  572 (681)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.65  E-value=9.4e-16  Score=123.49  Aligned_cols=104  Identities=12%  Similarity=0.056  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 014212           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL   93 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   93 (429)
                      ...++.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|+++.+++.+|.++.
T Consensus        17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~   96 (121)
T 1hxi_A           17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   96 (121)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHH
Q 014212           94 AMGKFKEALKDFQQVKKLSPNDPD  117 (429)
Q Consensus        94 ~~g~~~eA~~~~~~al~~~p~~~~  117 (429)
                      .+|++++|+..|+++++++|++..
T Consensus        97 ~~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           97 NEHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHHHC-------
T ss_pred             HcCCHHHHHHHHHHHHHhCcCCCC
Confidence            999999999999999999998754

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.65  E-value=5e-16  Score=155.21  Aligned_cols=131  Identities=13%  Similarity=0.034  Sum_probs=100.1

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212            9 SSVSRAEELKALANEAFRAKKY-SQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   87 (429)
                      ..|..+.+++.+|..+...|++ ++|++.|+++++++|+++.+|..+|.+|..+|++++|+.+|+++++++|+ ..++.+
T Consensus        97 ~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~  175 (474)
T 4abn_A           97 SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQN  175 (474)
T ss_dssp             TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHH
T ss_pred             cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHH
Confidence            3556677777788888878887 88888888888888887777888888888888888888888888877777 677777


Q ss_pred             HHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--------HhHHHHHhhcCCc
Q 014212           88 RGAAYLAM---------GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV--------KKLKFEEAIAVPE  142 (429)
Q Consensus        88 la~~~~~~---------g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~--------~~~~~~~a~~~~~  142 (429)
                      +|.++..+         |++++|+..|+++++++|+++.++..++.++...        ++  +++|+..++
T Consensus       176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~--~~~A~~~~~  245 (474)
T 4abn_A          176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKI--SQQALSAYA  245 (474)
T ss_dssp             HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHH--HHHHHHHHH
T ss_pred             HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccch--HHHHHHHHH
Confidence            78777777         7777888888888888887777777777777776        55  555555554

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=7.1e-15  Score=121.38  Aligned_cols=120  Identities=34%  Similarity=0.498  Sum_probs=113.4

Q ss_pred             CcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChH
Q 014212            7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK   83 (429)
Q Consensus         7 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~   83 (429)
                      ....+..+..++.+|..++..|++++|+..|+++++.+|++   ..++.++|.++...|++++|+..+++++.++|+++.
T Consensus        21 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~  100 (148)
T 2dba_A           21 ATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK  100 (148)
T ss_dssp             CCTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHH
T ss_pred             CccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHH
Confidence            44567889999999999999999999999999999999998   899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014212           84 GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE  126 (429)
Q Consensus        84 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~  126 (429)
                      +++.+|.++..+|++++|+..|+++++++|+++.++..++.+.
T Consensus       101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A          101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888776653

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.64  E-value=1.6e-14  Score=115.04  Aligned_cols=117  Identities=32%  Similarity=0.536  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   92 (429)
                      .+..++.+|..+...|++++|++.|+++++..|.+..++..+|.++...|++++|+..+++++..+|.++.+++.+|.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   87 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            37889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014212           93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV  129 (429)
Q Consensus        93 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~  129 (429)
                      ...|++++|+..|+++++.+|+++.++..++.++...
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  124 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ  124 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999998877543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.63  E-value=4.3e-15  Score=147.71  Aligned_cols=125  Identities=30%  Similarity=0.468  Sum_probs=116.5

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhhCHHHHHHHHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---------------AVYYANRAFAHTKLEEYGSAIQDAS   72 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~   72 (429)
                      ...|..+.+++.+|..+++.|+|++|+..|++|++++|.+               ..+|+++|.|+.++|++++|+.+|+
T Consensus       262 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~  341 (457)
T 1kt0_A          262 KEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCD  341 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            4567889999999999999999999999999999999998               7999999999999999999999999


Q ss_pred             HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Q 014212           73 KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL  132 (429)
Q Consensus        73 ~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  132 (429)
                      ++++++|+++.+|+++|.+|..+|++++|+.+|++|++++|++..++..++.++..+++.
T Consensus       342 ~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~  401 (457)
T 1kt0_A          342 KALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEH  401 (457)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998874

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.62  E-value=7.3e-15  Score=125.63  Aligned_cols=133  Identities=17%  Similarity=0.226  Sum_probs=115.6

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   87 (429)
                      ...|..+.++..+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|.++.++..
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  115 (186)
T 3as5_A           36 DADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFR  115 (186)
T ss_dssp             CTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHH
Confidence            44566678888899999999999999999999999999999999999999999999999999999999999988999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      +|.++...|++++|+..++++++..|+++.++..++.++...++  +++|+..++
T Consensus       116 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~  168 (186)
T 3as5_A          116 LGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGR--HEEALPHFK  168 (186)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            99999999999999999999999999988888888888888776  667766666

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.61  E-value=1.2e-14  Score=117.30  Aligned_cols=126  Identities=29%  Similarity=0.482  Sum_probs=118.6

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 014212           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA   94 (429)
Q Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   94 (429)
                      .+++.+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|.++.+++.+|.++..
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           95 MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        95 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      .|++++|+..++++++..|+++.++..++.++...++  +++|...++
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~  127 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD--YDEAIEYYQ  127 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--HHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc--HHHHHHHHH
Confidence            9999999999999999999999999999999887776  667766655

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.61  E-value=2.2e-14  Score=115.36  Aligned_cols=120  Identities=28%  Similarity=0.443  Sum_probs=112.6

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-------hH
Q 014212           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-------PK   83 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~   83 (429)
                      |..+..++.+|..++..|++++|+..|+++++.+|.++.++.++|.++...|++++|+.++++++...|.+       +.
T Consensus         1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~   80 (131)
T 1elr_A            1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK   80 (131)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999998877       89


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212           84 GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (429)
Q Consensus        84 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  131 (429)
                      +++.+|.++..+|++++|+..|+++++..| ++.....++.+...+++
T Consensus        81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE  127 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999 68888888888776654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.60  E-value=7.9e-15  Score=149.82  Aligned_cols=147  Identities=11%  Similarity=0.071  Sum_probs=131.7

Q ss_pred             CCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 014212            6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY   85 (429)
Q Consensus         6 ~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~   85 (429)
                      ....+|..+.++..+|..+...|++++|++.|+++++++|+++.++.++|.++..+|++++|++.|+++++++|+++.++
T Consensus        15 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~   94 (568)
T 2vsy_A           15 AVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIA   94 (568)
T ss_dssp             ------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH
Confidence            34567888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---HhHHHHHhhcCCccccccccccccccccccCCC
Q 014212           86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV---KKLKFEEAIAVPESERHSVADSIDYQSIEVEPQ  162 (429)
Q Consensus        86 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~---~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~  162 (429)
                      +++|.+|..+|++++|++.|+++++++|+++.++..++.++..+   ++  +++|...++            ++++.+|.
T Consensus        95 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~--~~~A~~~~~------------~al~~~p~  160 (568)
T 2vsy_A           95 LWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRA--LDVLSAQVR------------AAVAQGVG  160 (568)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTT--HHHHHHHHH------------HHHHHTCC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc--HHHHHHHHH------------HHHhcCCc
Confidence            99999999999999999999999999999999999999999888   66  667766666            77777776


Q ss_pred             CCCC
Q 014212          163 YSGA  166 (429)
Q Consensus       163 ~~~~  166 (429)
                      ...+
T Consensus       161 ~~~~  164 (568)
T 2vsy_A          161 AVEP  164 (568)
T ss_dssp             CSCH
T ss_pred             ccCh
Confidence            6544

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.60  E-value=6.8e-16  Score=154.22  Aligned_cols=132  Identities=14%  Similarity=0.150  Sum_probs=116.3

Q ss_pred             hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 014212           27 AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEY-GSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDF  105 (429)
Q Consensus        27 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~  105 (429)
                      .+++++|+..++++....|.++.+++.+|.++...|++ ++|+.+|+++++++|+++.+|+.+|.+|..+|++++|+.+|
T Consensus        81 ~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~  160 (474)
T 4abn_A           81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCF  160 (474)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            45578999999999999999999999999999999999 99999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHH---------HhHHHHHhhcCCcc------------------------------ccc
Q 014212          106 QQVKKLSPNDPDAAQKVKECEKAV---------KKLKFEEAIAVPES------------------------------ERH  146 (429)
Q Consensus       106 ~~al~~~p~~~~~~~~l~~~~~~~---------~~~~~~~a~~~~~~------------------------------~~~  146 (429)
                      +++++++|+ ..++..++.++..+         ++  +++|+..+++                              +++
T Consensus       161 ~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~  237 (474)
T 4abn_A          161 SGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRH--VMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS  237 (474)
T ss_dssp             HHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHH--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhh--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence            999999999 79999999999887         76  4555543332                              556


Q ss_pred             cccccccccccccCC
Q 014212          147 SVADSIDYQSIEVEP  161 (429)
Q Consensus       147 ~~a~~~~~~~l~~~~  161 (429)
                      .+|...+.++++++|
T Consensus       238 ~~A~~~~~~al~~~p  252 (474)
T 4abn_A          238 QQALSAYAQAEKVDR  252 (474)
T ss_dssp             HHHHHHHHHHHHHCG
T ss_pred             HHHHHHHHHHHHhCC
Confidence            777777777777766

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.60  E-value=4.9e-15  Score=135.54  Aligned_cols=156  Identities=19%  Similarity=0.181  Sum_probs=121.7

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---   81 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---   81 (429)
                      ...|..+..++.+|..++..|+|++|+..|+++++..|++   +.+++.+|.+++.+|++++|+..|++++...|++   
T Consensus         9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~   88 (261)
T 3qky_A            9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV   88 (261)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence            3467788999999999999999999999999999999999   9999999999999999999999999999998854   


Q ss_pred             hHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH---HHHHHhHHHHHhhcCCccccccccc
Q 014212           82 PKGYYRRGAAYLA--------MGKFKEALKDFQQVKKLSPNDPDAAQKVKEC---EKAVKKLKFEEAIAVPESERHSVAD  150 (429)
Q Consensus        82 ~~~~~~la~~~~~--------~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~---~~~~~~~~~~~a~~~~~~~~~~~a~  150 (429)
                      +.+++.+|.++..        +|++++|+..|+++++..|+++.+...+..+   ........+..|..++..+++.+|.
T Consensus        89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  168 (261)
T 3qky_A           89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA  168 (261)
T ss_dssp             HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence            6789999999999        9999999999999999999987666222111   1111111122333333334444444


Q ss_pred             cccccccccCCCC
Q 014212          151 SIDYQSIEVEPQY  163 (429)
Q Consensus       151 ~~~~~~l~~~~~~  163 (429)
                      ..+.++++..|..
T Consensus       169 ~~~~~~l~~~p~~  181 (261)
T 3qky_A          169 VTYEAVFDAYPDT  181 (261)
T ss_dssp             HHHHHHHHHCTTS
T ss_pred             HHHHHHHHHCCCC
Confidence            4444888887764

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.60  E-value=4.4e-14  Score=120.71  Aligned_cols=174  Identities=14%  Similarity=0.133  Sum_probs=143.7

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   89 (429)
                      ....+..+..+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++.+|.++.++..+|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a   83 (186)
T 3as5_A            4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLG   83 (186)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCCccc
Q 014212           90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIE  169 (429)
Q Consensus        90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~  169 (429)
                      .++...|++++|+..++++++..|+++.++..++.++...++  +++|+..++            ++++..|..      
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~------------~~~~~~~~~------  143 (186)
T 3as5_A           84 LTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR--FDEAIDSFK------------IALGLRPNE------  143 (186)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCTTC------
T ss_pred             HHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCc--HHHHHHHHH------------HHHhcCccc------
Confidence            999999999999999999999999999999999999988887  777777776            566555543      


Q ss_pred             CCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhC
Q 014212          170 GDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRAL  210 (429)
Q Consensus       170 ~~~l~~~~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~  210 (429)
                           ......+...+...+.  ...+...+..+.+.....
T Consensus       144 -----~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~  177 (186)
T 3as5_A          144 -----GKVHRAIAFSYEQMGR--HEEALPHFKKANELDEGA  177 (186)
T ss_dssp             -----HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHCC
T ss_pred             -----hHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCc
Confidence                 1122233333333332  344666666666655443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.60  E-value=9.3e-14  Score=124.59  Aligned_cols=132  Identities=22%  Similarity=0.226  Sum_probs=106.3

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   88 (429)
                      ..|..+.++..+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++..|.++.++..+
T Consensus        52 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  131 (243)
T 2q7f_A           52 ENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYML  131 (243)
T ss_dssp             TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred             hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            35666778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        89 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      |.++..+|++++|+..++++++..|+++.++..++.++...++  +++|+..++
T Consensus       132 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~  183 (243)
T 2q7f_A          132 GTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGM--LDEALSQFA  183 (243)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--CHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            8888888888888888888888888888888888888777776  556655555

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.60  E-value=2.5e-14  Score=115.49  Aligned_cols=113  Identities=19%  Similarity=0.167  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHH
Q 014212           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNA---VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRR   88 (429)
Q Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l   88 (429)
                      .+++.+|..++..|++++|+..|+++++..|+++   .+++.+|.++...|++++|+..|++++..+|++   +.+++.+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            4578999999999999999999999999999988   899999999999999999999999999999999   8899999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014212           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK  127 (429)
Q Consensus        89 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~  127 (429)
                      |.++..+|++++|+..|+++++..|+++.+......+..
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~  121 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS  121 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence            999999999999999999999999999988766655443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.59  E-value=1.7e-14  Score=139.28  Aligned_cols=122  Identities=22%  Similarity=0.462  Sum_probs=116.8

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIE----------------LNSQNAVYYANRAFAHTKLEEYGSAIQDASK   73 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~   73 (429)
                      ....+..+..+|..+++.|+|++|+..|+++++                .+|.+..++.++|.++.++|++++|+.++++
T Consensus       219 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~  298 (370)
T 1ihg_A          219 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE  298 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            455678899999999999999999999999999                7888899999999999999999999999999


Q ss_pred             HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212           74 AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (429)
Q Consensus        74 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  131 (429)
                      +++++|+++.+++++|.+|..+|++++|+..|++|++++|+++.++..++.++..+++
T Consensus       299 al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~  356 (370)
T 1ihg_A          299 ALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA  356 (370)
T ss_dssp             HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999988887

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.59  E-value=1.4e-14  Score=127.78  Aligned_cols=136  Identities=16%  Similarity=0.184  Sum_probs=123.2

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 014212           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA   90 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~   90 (429)
                      ...+..++.+|..++..|++++|+..|++++  +| ++.+++++|.++..+|++++|+..|++++.++|+++.+++++|.
T Consensus         3 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~   79 (213)
T 1hh8_A            3 LVEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGM   79 (213)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            4567788999999999999999999999995  44 78999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccc
Q 014212           91 AYLAMGKFKEALKDFQQVKKLSPNDP----------------DAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDY  154 (429)
Q Consensus        91 ~~~~~g~~~eA~~~~~~al~~~p~~~----------------~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~  154 (429)
                      ++..+|++++|+..|++++++.|++.                .++..++.++..+++  +++|+..++            
T Consensus        80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~------------  145 (213)
T 1hh8_A           80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE--WKKAEEQLA------------  145 (213)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC--HHHHHHHHH------------
T ss_pred             HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC--HHHHHHHHH------------
Confidence            99999999999999999999998877                999999999998887  777777776            


Q ss_pred             cccccCCCC
Q 014212          155 QSIEVEPQY  163 (429)
Q Consensus       155 ~~l~~~~~~  163 (429)
                      +++++.|..
T Consensus       146 ~al~~~p~~  154 (213)
T 1hh8_A          146 LATSMKSEP  154 (213)
T ss_dssp             HHHTTCCSG
T ss_pred             HHHHcCccc
Confidence            666666654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.59  E-value=8.6e-15  Score=121.65  Aligned_cols=102  Identities=20%  Similarity=0.221  Sum_probs=93.5

Q ss_pred             HHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 014212           25 FRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEY----------GSAIQDASKAIEIDPRYPKGYYRRGAAYLA   94 (429)
Q Consensus        25 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~   94 (429)
                      -+.+.|++|++.|+++++++|+++.+|+++|.++..++++          ++|+..|++|++++|++..+|+++|.+|..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            3557899999999999999999999999999999999876          499999999999999999999999999998


Q ss_pred             cC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014212           95 MG-----------KFKEALKDFQQVKKLSPNDPDAAQKVKECE  126 (429)
Q Consensus        95 ~g-----------~~~eA~~~~~~al~~~p~~~~~~~~l~~~~  126 (429)
                      +|           ++++|+++|++|++++|++......+..+.
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~  135 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA  135 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            85           899999999999999999988777665543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.59  E-value=1.1e-15  Score=127.83  Aligned_cols=119  Identities=16%  Similarity=0.124  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014212           31 SQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKK  110 (429)
Q Consensus        31 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~  110 (429)
                      -.+-..|+++++++|++..+++.+|.+++..|++++|+..|++++..+|.++.+|+.+|.++..+|++++|+..|+++++
T Consensus         4 ~~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   83 (148)
T 2vgx_A            4 GSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV   83 (148)
T ss_dssp             --CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cchhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            33445789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212          111 LSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY  163 (429)
Q Consensus       111 ~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~  163 (429)
                      ++|+++.+++.+|.++..+|+  +++|+..++            +++++.|..
T Consensus        84 l~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~------------~al~~~p~~  122 (148)
T 2vgx_A           84 MDIXEPRFPFHAAECLLQXGE--LAEAESGLF------------LAQELIANX  122 (148)
T ss_dssp             HSTTCTHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHHTTC
T ss_pred             cCCCCchHHHHHHHHHHHcCC--HHHHHHHHH------------HHHHHCcCC
Confidence            999999999999999999998  778877777            777777653

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.58  E-value=2.7e-14  Score=126.30  Aligned_cols=133  Identities=19%  Similarity=0.144  Sum_probs=123.4

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   87 (429)
                      ...|..+.++..+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|.+..++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~   81 (225)
T 2vq2_A            2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNN   81 (225)
T ss_dssp             --CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Confidence            45688899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           88 RGAAYLAM-GKFKEALKDFQQVKK--LSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        88 la~~~~~~-g~~~eA~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      +|.++... |++++|+..++++++  ..|.+..++..++.++...++  +++|+..++
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~  137 (225)
T 2vq2_A           82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ--FGLAEAYLK  137 (225)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            99999999 999999999999999  667778999999999988887  777777766

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.58  E-value=6.2e-14  Score=134.31  Aligned_cols=129  Identities=16%  Similarity=0.160  Sum_probs=104.0

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA   91 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~   91 (429)
                      ..+..++.+|..++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++++|+++.++..+|.+
T Consensus        63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (365)
T 4eqf_A           63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS  142 (365)
T ss_dssp             TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            44566888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCC--------------------------------------------C--CHHHHHHHHHH
Q 014212           92 YLAMGKFKEALKDFQQVKKLSP--------------------------------------------N--DPDAAQKVKEC  125 (429)
Q Consensus        92 ~~~~g~~~eA~~~~~~al~~~p--------------------------------------------~--~~~~~~~l~~~  125 (429)
                      |..+|++++|+..|++++++.|                                            +  ++.++..++.+
T Consensus       143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  222 (365)
T 4eqf_A          143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL  222 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred             HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence            8888887777777777766544                                            3  77888888888


Q ss_pred             HHHHHhHHHHHhhcCCc
Q 014212          126 EKAVKKLKFEEAIAVPE  142 (429)
Q Consensus       126 ~~~~~~~~~~~a~~~~~  142 (429)
                      +...++  +++|+..++
T Consensus       223 ~~~~g~--~~~A~~~~~  237 (365)
T 4eqf_A          223 FHLSGE--FNRAIDAFN  237 (365)
T ss_dssp             HHHHTC--HHHHHHHHH
T ss_pred             HHHCCC--HHHHHHHHH
Confidence            888887  777777766

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.58  E-value=7.7e-15  Score=142.00  Aligned_cols=121  Identities=21%  Similarity=0.180  Sum_probs=61.2

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 014212           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA   90 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~   90 (429)
                      |+...++..+|..+...|++++|++.|+++++.+|+++.+|.++|.++...|++++|+..|+++++++|+++.++..+|.
T Consensus       132 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~  211 (388)
T 1w3b_A          132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGN  211 (388)
T ss_dssp             TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            44444455555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212           91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (429)
Q Consensus        91 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  131 (429)
                      ++...|++++|+..|++++.++|+++.++..++.++...++
T Consensus       212 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  252 (388)
T 1w3b_A          212 VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL  252 (388)
T ss_dssp             HHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCC
Confidence            55555555555555555555555544444444444444444

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.57  E-value=2.2e-14  Score=128.77  Aligned_cols=143  Identities=20%  Similarity=0.259  Sum_probs=130.5

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   89 (429)
                      .|....++..+|..+...|++++|+..|+++++..|.+..++..+|.++...|++++|+..+++++...|+++.++..+|
T Consensus        87 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  166 (243)
T 2q7f_A           87 DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFG  166 (243)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHH
Confidence            56678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCC
Q 014212           90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA  166 (429)
Q Consensus        90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~  166 (429)
                      .++...|++++|+..|+++++..|+++.++..++.++...++  +++|+..++            ++++..|....+
T Consensus       167 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~------------~~~~~~p~~~~~  229 (243)
T 2q7f_A          167 MCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN--REKALEMLD------------KAIDIQPDHMLA  229 (243)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--TTHHHHHHH------------HHHHHCTTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccC--HHHHHHHHH------------HHHccCcchHHH
Confidence            999999999999999999999999999999999999988776  555655555            777777765443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.57  E-value=3.3e-14  Score=131.92  Aligned_cols=105  Identities=32%  Similarity=0.493  Sum_probs=101.7

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 014212           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA   90 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~   90 (429)
                      |..+.+++.+|..++..|++++|+..|+++++.+|+++.++.++|.++..+|++++|+..++++++++|+++.+++++|.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCC
Q 014212           91 AYLAMGKFKEALKDFQQVKKLSPND  115 (429)
Q Consensus        91 ~~~~~g~~~eA~~~~~~al~~~p~~  115 (429)
                      +|..+|++++|+..|+++++++|++
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999876

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.57  E-value=1.6e-14  Score=139.74  Aligned_cols=140  Identities=21%  Similarity=0.173  Sum_probs=80.9

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   89 (429)
                      +|..+.++..+|..+...|++++|+..|+++++.+|++..++.++|.++...|++++|+..|+++++.+|++..++..+|
T Consensus        63 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  142 (388)
T 1w3b_A           63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLG  142 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            34455555555555555566666666666655555555555555555555555555666656555555555555555566


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212           90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY  163 (429)
Q Consensus        90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~  163 (429)
                      .++..+|++++|+..|+++++.+|++..++..++.++...++  +++|+.            .+.++++.+|..
T Consensus       143 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--~~~A~~------------~~~~al~~~p~~  202 (388)
T 1w3b_A          143 NLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE--IWLAIH------------HFEKAVTLDPNF  202 (388)
T ss_dssp             HHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--HHHHHH------------HHHHHHHHCTTC
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHH------------HHHHHHhcCCCc
Confidence            666556666666666666666666665555555555555444  344443            334666666654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.57  E-value=2.6e-14  Score=130.72  Aligned_cols=141  Identities=18%  Similarity=0.174  Sum_probs=123.9

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH--------hhCHHHHHHHHHHHHHhCC
Q 014212           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTK--------LEEYGSAIQDASKAIEIDP   79 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~--------~g~~~~A~~~~~~al~~~p   79 (429)
                      +..+.+++.+|.+++..|++++|+..|+++++..|++   +.+++.+|.+++.        +|++++|+..|++++..+|
T Consensus        49 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p  128 (261)
T 3qky_A           49 EWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP  128 (261)
T ss_dssp             TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred             cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc
Confidence            3448999999999999999999999999999998854   6789999999999        9999999999999999999


Q ss_pred             CChHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHh--------
Q 014212           80 RYPKGY-----------------YRRGAAYLAMGKFKEALKDFQQVKKLSPN---DPDAAQKVKECEKAVKK--------  131 (429)
Q Consensus        80 ~~~~~~-----------------~~la~~~~~~g~~~eA~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~--------  131 (429)
                      +++.+.                 +.+|.+|..+|++++|+..|+++++..|+   .+.+++.++.++..+|.        
T Consensus       129 ~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~  208 (261)
T 3qky_A          129 NHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQP  208 (261)
T ss_dssp             TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHH
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhccc
Confidence            987766                 88999999999999999999999999998   56799999999988743        


Q ss_pred             HHHHHhhcCCccccccccccccccccccCCCC
Q 014212          132 LKFEEAIAVPESERHSVADSIDYQSIEVEPQY  163 (429)
Q Consensus       132 ~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~  163 (429)
                      .++++|+..++            ++++..|+.
T Consensus       209 ~~~~~A~~~~~------------~~~~~~p~~  228 (261)
T 3qky_A          209 ERYRRAVELYE------------RLLQIFPDS  228 (261)
T ss_dssp             HHHHHHHHHHH------------HHHHHCTTC
T ss_pred             chHHHHHHHHH------------HHHHHCCCC
Confidence            22566666665            788877765

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.57  E-value=7.3e-14  Score=123.46  Aligned_cols=132  Identities=14%  Similarity=0.107  Sum_probs=104.3

Q ss_pred             cccHhHHHHHHH----------------HHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHH
Q 014212            8 NSSVSRAEELKA----------------LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDA   71 (429)
Q Consensus         8 ~~~p~~~~~~~~----------------~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~   71 (429)
                      ..+|+++.+++.                +|.++...|++++|+..|+++++++|+++.++.++|.++..+|++++|+.+|
T Consensus        32 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~  111 (208)
T 3urz_A           32 ALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMY  111 (208)
T ss_dssp             HHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            346788888888                9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCChHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           72 SKAIEIDPRYPKGYYRRGAAYLAMGK--FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        72 ~~al~~~p~~~~~~~~la~~~~~~g~--~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      +++++++|+++.+|+++|.+|..+|+  .++|...+++++...|. ..+++.++.++...++  +++|+..++
T Consensus       112 ~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~--~~~A~~~~~  181 (208)
T 3urz_A          112 EKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTR--YEKARNSLQ  181 (208)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHT--HHHHHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccC--HHHHHHHHH
Confidence            99999999999999999999876654  34455666665432221 2245566666666665  555555444

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.57  E-value=2.4e-15  Score=143.48  Aligned_cols=143  Identities=21%  Similarity=0.311  Sum_probs=98.8

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHhhCHHHHHHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA-----------------VYYANRAFAHTKLEEYGSAIQD   70 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~lg~~~~~~g~~~~A~~~   70 (429)
                      ...+..+..++.+|+.++..|+|++|+..|+++++..|++.                 .+++++|.++..+|++++|+.+
T Consensus       173 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~  252 (338)
T 2if4_A          173 EERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGH  252 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            34577899999999999999999999999999999999987                 4899999999999999999999


Q ss_pred             HHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccc
Q 014212           71 ASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVAD  150 (429)
Q Consensus        71 ~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~  150 (429)
                      |+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|+++.++..++.+......             ....+.
T Consensus       253 ~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~-------------~~~~a~  319 (338)
T 2if4_A          253 CNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKA-------------LYQKQK  319 (338)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------------------
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-------------HHHHHH
Confidence            9999999999999999999999999999999999999999999999999988877544332             223334


Q ss_pred             cccccccccCCCC
Q 014212          151 SIDYQSIEVEPQY  163 (429)
Q Consensus       151 ~~~~~~l~~~~~~  163 (429)
                      ..+.+++...|..
T Consensus       320 ~~~~~~l~~~p~~  332 (338)
T 2if4_A          320 EMYKGIFKGKDEG  332 (338)
T ss_dssp             -------------
T ss_pred             HHHHHhhCCCCCC
Confidence            4444666666654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.56  E-value=3.4e-14  Score=128.48  Aligned_cols=128  Identities=19%  Similarity=0.283  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHhhCHHH
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIE--------------------------LNSQNAVYYANRAFAHTKLEEYGS   66 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--------------------------~~p~~~~~~~~lg~~~~~~g~~~~   66 (429)
                      .+.++..+|..+...|++++|+..|+++++                          .+|.++.++..+|.++...|++++
T Consensus        78 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (258)
T 3uq3_A           78 ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPN  157 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHH
Confidence            378999999999999999999999999999                          677778899999999999999999


Q ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           67 AIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        67 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      |+..+++++..+|.++.+++.+|.++..+|++++|+..|+++++.+|+++.++..++.++...++  +++|+..++
T Consensus       158 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~  231 (258)
T 3uq3_A          158 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE--YASALETLD  231 (258)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh--HHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999888  677777776

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.56  E-value=1.1e-13  Score=126.53  Aligned_cols=131  Identities=20%  Similarity=0.154  Sum_probs=119.5

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   88 (429)
                      ..|..+.++..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++++|.++.+++.+
T Consensus        38 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l  117 (275)
T 1xnf_A           38 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR  117 (275)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             cCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        89 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      |.++..+|++++|+..|++++++.|+++......+.+ ...++  +++|+..+.
T Consensus       118 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~--~~~A~~~~~  168 (275)
T 1xnf_A          118 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLD--EKQAKEVLK  168 (275)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHC--HHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcC--HHHHHHHHH
Confidence            9999999999999999999999999999777666554 33344  667776665

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.55  E-value=1.3e-13  Score=131.71  Aligned_cols=131  Identities=18%  Similarity=0.152  Sum_probs=85.1

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC----------
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP----------   79 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----------   79 (429)
                      +|..+.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|          
T Consensus        94 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  173 (368)
T 1fch_A           94 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAE  173 (368)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---
T ss_pred             CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence            4556666667777777777777777777777777777666666666666666666665555555444333          


Q ss_pred             ---------------------------------------C--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 014212           80 ---------------------------------------R--YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA  118 (429)
Q Consensus        80 ---------------------------------------~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~  118 (429)
                                                             +  ++.++..+|.++...|++++|+..|+++++++|+++.+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  253 (368)
T 1fch_A          174 EGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL  253 (368)
T ss_dssp             ------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHH
Confidence                                                   3  45566667777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHhHHHHHhhcCCc
Q 014212          119 AQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus       119 ~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      +..++.++...++  +++|+..++
T Consensus       254 ~~~l~~~~~~~g~--~~~A~~~~~  275 (368)
T 1fch_A          254 WNKLGATLANGNQ--SEEAVAAYR  275 (368)
T ss_dssp             HHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHHHHcCC--HHHHHHHHH
Confidence            7777766666665  455554444

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.55  E-value=8.4e-14  Score=137.04  Aligned_cols=157  Identities=20%  Similarity=0.264  Sum_probs=130.1

Q ss_pred             CCCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 014212            5 ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG   84 (429)
Q Consensus         5 ~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~   84 (429)
                      +.-..+|.++..+..+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.+
T Consensus        17 ~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~   96 (450)
T 2y4t_A           17 NLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAA   96 (450)
T ss_dssp             ------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             ccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCC
Q 014212           85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP---DAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEP  161 (429)
Q Consensus        85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~  161 (429)
                      ++.+|.+|..+|++++|+..|+++++.+|+++   .++..++.++.....  +..|..+...+...+|...+.++++..|
T Consensus        97 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~A~~~~~~~~~~~~  174 (450)
T 2y4t_A           97 RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRL--RSQALNAFGSGDYTAAIAFLDKILEVCV  174 (450)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999998   888777665443333  4444444445555555555556666655


Q ss_pred             CC
Q 014212          162 QY  163 (429)
Q Consensus       162 ~~  163 (429)
                      ..
T Consensus       175 ~~  176 (450)
T 2y4t_A          175 WD  176 (450)
T ss_dssp             TC
T ss_pred             CC
Confidence            43

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.55  E-value=1e-13  Score=130.06  Aligned_cols=131  Identities=16%  Similarity=0.039  Sum_probs=98.2

Q ss_pred             cHhHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212           10 SVSRAEELKALANEAFRAK-KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   88 (429)
                      +|..+.++..+|..+...| ++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++..|++..++..+
T Consensus        86 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  165 (330)
T 3hym_B           86 YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYI  165 (330)
T ss_dssp             CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHH
Confidence            4556667777777777777 777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        89 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      |.++...|++++|+..++++++..|+++.++..++.++...++  +++|+..++
T Consensus       166 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~  217 (330)
T 3hym_B          166 GLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGE--WKTAEKWFL  217 (330)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccc--HHHHHHHHH
Confidence            7777777777777777777777777777777777777776666  566665555

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.55  E-value=6.6e-14  Score=123.78  Aligned_cols=132  Identities=14%  Similarity=0.075  Sum_probs=123.9

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-hCHHHHHHHHHHHHH--hCCCChHHH
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL-EEYGSAIQDASKAIE--IDPRYPKGY   85 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~   85 (429)
                      ..|..+.++..+|..+...|++++|+..|+++++.+|.+..++..+|.++... |++++|+..++++++  .+|.+..++
T Consensus        37 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  116 (225)
T 2vq2_A           37 SDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIAN  116 (225)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHH
T ss_pred             hCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHH
Confidence            35667889999999999999999999999999999999999999999999999 999999999999999  667778999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        86 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      +.+|.++...|++++|+..|+++++..|+++.++..++.++...++  +++|+..++
T Consensus       117 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~  171 (225)
T 2vq2_A          117 LNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ--LGDADYYFK  171 (225)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            9999999999999999999999999999999999999999999888  778877777

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.55  E-value=2.7e-14  Score=130.67  Aligned_cols=135  Identities=16%  Similarity=0.189  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC----hHHHHHHH
Q 014212           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY----PKGYYRRG   89 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la   89 (429)
                      ++.++..|..++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..+++++. .|.+    ..++..+|
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg   81 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG   81 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence            467889999999999999999999999999999999999999999999999999999999999 4444    44599999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212           90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY  163 (429)
Q Consensus        90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~  163 (429)
                      .++..+|++++|+..|+++++.+|+++.++..++.++...++  +++|+..++            ++++.+|..
T Consensus        82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~------------~al~~~~~~  141 (272)
T 3u4t_A           82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN--FPLAIQYME------------KQIRPTTTD  141 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC--HHHHHHHHG------------GGCCSSCCC
T ss_pred             HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccC--HHHHHHHHH------------HHhhcCCCc
Confidence            999999999999999999999999999999999999999888  788888777            666665543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.55  E-value=4.3e-14  Score=127.88  Aligned_cols=134  Identities=17%  Similarity=0.131  Sum_probs=124.4

Q ss_pred             CcccHhH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 014212            7 ENSSVSR-AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY   85 (429)
Q Consensus         7 ~~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~   85 (429)
                      ...+|.. +.++..+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|.++.++
T Consensus        29 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  108 (252)
T 2ho1_A           29 TDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVL  108 (252)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHH
Confidence            4456776 899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           86 YRRGAAYLAMGKFKEALKDFQQVKK--LSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        86 ~~la~~~~~~g~~~eA~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      ..+|.++..+|++++|+..|+++++  ..|.++.++..++.++...++  +++|+..++
T Consensus       109 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~  165 (252)
T 2ho1_A          109 NNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKK--PAQAKEYFE  165 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            9999999999999999999999999  888999999999999988887  777777766

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.54  E-value=3.7e-14  Score=135.88  Aligned_cols=155  Identities=17%  Similarity=0.137  Sum_probs=82.3

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC----------
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP----------   79 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----------   79 (429)
                      +|..+.++..+|..+...|++++|+..|+++++++|+++.++..+|.++..+|++++|+..++++++++|          
T Consensus        95 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  174 (365)
T 4eqf_A           95 DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK  174 (365)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-----
T ss_pred             CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhc
Confidence            3444555555555555555555555555555555555555555555555555555555554444444332          


Q ss_pred             ----------------------------------C--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014212           80 ----------------------------------R--YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK  123 (429)
Q Consensus        80 ----------------------------------~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~  123 (429)
                                                        +  ++.+++.+|.++..+|++++|+..|+++++..|+++.++..++
T Consensus       175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  254 (365)
T 4eqf_A          175 GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLG  254 (365)
T ss_dssp             --------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence                                              2  4555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHhHHHHHhhcCC----------------------ccccccccccccccccccCCCCCCC
Q 014212          124 ECEKAVKKLKFEEAIAVP----------------------ESERHSVADSIDYQSIEVEPQYSGA  166 (429)
Q Consensus       124 ~~~~~~~~~~~~~a~~~~----------------------~~~~~~~a~~~~~~~l~~~~~~~~~  166 (429)
                      .++...++  +++|+..+                      ..++..+|...+.+++++.|.....
T Consensus       255 ~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  317 (365)
T 4eqf_A          255 ATLANGDR--SEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQ  317 (365)
T ss_dssp             HHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHcCC--HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCC
Confidence            55555554  22332222                      2234445555555777777765543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.54  E-value=1.7e-14  Score=112.83  Aligned_cols=107  Identities=21%  Similarity=0.234  Sum_probs=102.2

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC--ChHHHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--YPKGYYR   87 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~   87 (429)
                      +|..+..+..+|..++..|++++|+..|+++++.+|.+..++.++|.++..+|++++|+..++++++.+|.  +..+++.
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            35667788999999999999999999999999999999999999999999999999999999999999999  9999999


Q ss_pred             HHHHHHHc-CCHHHHHHHHHHHHHhCCCCH
Q 014212           88 RGAAYLAM-GKFKEALKDFQQVKKLSPNDP  116 (429)
Q Consensus        88 la~~~~~~-g~~~eA~~~~~~al~~~p~~~  116 (429)
                      +|.++..+ |++++|++++++++...|.++
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            99999999 999999999999999999764

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.54  E-value=7.4e-14  Score=126.31  Aligned_cols=131  Identities=21%  Similarity=0.172  Sum_probs=124.2

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHH--hCCCChHHHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE--IDPRYPKGYYR   87 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~   87 (429)
                      .|..+.++..+|..+...|++++|++.|+++++.+|.+..++..+|.++...|++++|+..+++++.  ..|.++.+++.
T Consensus        67 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  146 (252)
T 2ho1_A           67 DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFEN  146 (252)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHH
Confidence            5667889999999999999999999999999999999999999999999999999999999999999  88889999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      +|.++..+|++++|+..|+++++..|+++.++..++.++...++  +++|+..++
T Consensus       147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~  199 (252)
T 2ho1_A          147 LGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKERE--YVPARQYYD  199 (252)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            99999999999999999999999999999999999999988887  777777776

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.54  E-value=1.2e-13  Score=118.38  Aligned_cols=118  Identities=19%  Similarity=0.226  Sum_probs=107.2

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHhhCH--HHHHHHHHHHHHhCCCChHHH
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFA-HTKLEEY--GSAIQDASKAIEIDPRYPKGY   85 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~--~~A~~~~~~al~~~p~~~~~~   85 (429)
                      .+|..+.+++.+|..+...|++++|+..|+++++++|+++.++..+|.+ +...|++  ++|+..+++++..+|+++.++
T Consensus        39 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  118 (177)
T 2e2e_A           39 ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITAL  118 (177)
T ss_dssp             HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHH
Confidence            4577788999999999999999999999999999999999999999999 8899998  999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014212           86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE  126 (429)
Q Consensus        86 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~  126 (429)
                      +.+|.++..+|++++|+..|+++++++|+++.....+..+.
T Consensus       119 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~  159 (177)
T 2e2e_A          119 MLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESIN  159 (177)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence            99999999999999999999999999999876655554443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.54  E-value=8.1e-14  Score=130.79  Aligned_cols=138  Identities=14%  Similarity=0.118  Sum_probs=87.8

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC---------CCCh
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID---------PRYP   82 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------p~~~   82 (429)
                      .....+..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...         |..+
T Consensus       157 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  236 (330)
T 3hym_B          157 GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE  236 (330)
T ss_dssp             TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCC
T ss_pred             ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHH
Confidence            3344555566666666666666666666666666666666666666666666666666666666654         4455


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCC
Q 014212           83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQ  162 (429)
Q Consensus        83 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~  162 (429)
                      .++..+|.++..+|++++|+..|+++++++|+++.++..++.++...++  +++|+..++            ++++++|.
T Consensus       237 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~------------~al~~~p~  302 (330)
T 3hym_B          237 PLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGN--FENAVDYFH------------TALGLRRD  302 (330)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC--HHHHHHHHH------------TTTTTCSC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhcc--HHHHHHHHH------------HHHccCCC
Confidence            6666666666666666666666666666666666666666666666665  555555555            77777665


Q ss_pred             C
Q 014212          163 Y  163 (429)
Q Consensus       163 ~  163 (429)
                      .
T Consensus       303 ~  303 (330)
T 3hym_B          303 D  303 (330)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.54  E-value=3.8e-14  Score=126.83  Aligned_cols=151  Identities=17%  Similarity=0.161  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChH---HHH
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK---GYY   86 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~   86 (429)
                      .+..++.+|..++..|+|++|+..|+++++..|++   ..+++.+|.+++.+|++++|+..|+++++.+|+++.   +++
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            46789999999999999999999999999999886   478999999999999999999999999999999875   899


Q ss_pred             HHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHHhHHHHHhhcCCcccc
Q 014212           87 RRGAAYLA------------------MGKFKEALKDFQQVKKLSPNDPDAA---QKVKECEKAVKKLKFEEAIAVPESER  145 (429)
Q Consensus        87 ~la~~~~~------------------~g~~~eA~~~~~~al~~~p~~~~~~---~~l~~~~~~~~~~~~~~a~~~~~~~~  145 (429)
                      .+|.++..                  +|++++|+..|+++++..|+++.+.   ..++.+...+....+..|..++..++
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~  162 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA  162 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            99999886                  5789999999999999999997554   34444444444444556666667777


Q ss_pred             ccccccccccccccCCCC
Q 014212          146 HSVADSIDYQSIEVEPQY  163 (429)
Q Consensus       146 ~~~a~~~~~~~l~~~~~~  163 (429)
                      +.+|...+.++++..|+.
T Consensus       163 ~~~A~~~~~~~l~~~p~~  180 (225)
T 2yhc_A          163 WVAVVNRVEGMLRDYPDT  180 (225)
T ss_dssp             HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHHHCcCC
Confidence            777777777999888864

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.54  E-value=1.3e-14  Score=151.34  Aligned_cols=176  Identities=11%  Similarity=-0.024  Sum_probs=143.0

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAI--------ELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR   80 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   80 (429)
                      .+|.++.+++..|   ...|++++|++.|++++        +.+|++..+++.+|.++..+|++++|+..|+++++++|+
T Consensus       389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~  465 (681)
T 2pzi_A          389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW  465 (681)
T ss_dssp             CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred             CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc
Confidence            4556666666666   88999999999999999        999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccC
Q 014212           81 YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVE  160 (429)
Q Consensus        81 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~  160 (429)
                      ++.+|+.+|.++..+|++++|+..|++|++++|+++.++..++.++..+++              +.+ ...+.++++++
T Consensus       466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~--------------~~~-~~~~~~al~~~  530 (681)
T 2pzi_A          466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGN--------------TDE-HKFYQTVWSTN  530 (681)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC--------------CCT-TCHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC--------------hHH-HHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999988875              444 56666999999


Q ss_pred             CCCCCCcccCCC--CCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q 014212          161 PQYSGARIEGDV--ITLDFVKKMMDDFKNQKCLHKRYAFQIVLQ  202 (429)
Q Consensus       161 ~~~~~~~~~~~~--l~~~~l~~li~~l~~~~~l~~~~~~~ll~~  202 (429)
                      |.+..+....+.  ...+..+..+..+.+...+.+.........
T Consensus       531 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~  574 (681)
T 2pzi_A          531 DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTS  574 (681)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHH
Confidence            988766544331  122335556666666665555444444333

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.53  E-value=8.9e-14  Score=129.67  Aligned_cols=184  Identities=15%  Similarity=0.092  Sum_probs=135.6

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHh-hCHHHHHHHHHHHHHhCCCC-
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKL-EEYGSAIQDASKAIEIDPRY-   81 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~-   81 (429)
                      .+..+.++.++|.+|...|++++|+.+|++++++.|..      +.++.++|.+|... |++++|+.+|++|+++.|.. 
T Consensus        73 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~  152 (292)
T 1qqe_A           73 EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ  152 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC
Confidence            34557899999999999999999999999999987653      56889999999996 99999999999999998754 


Q ss_pred             -----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHHHhHHHHHhhcCCcccccccc
Q 014212           82 -----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD-------AAQKVKECEKAVKKLKFEEAIAVPESERHSVA  149 (429)
Q Consensus        82 -----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~-------~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a  149 (429)
                           ..++.++|.++..+|++++|+..|++++++.|++..       ++..++.++..+++  +++|+..++       
T Consensus       153 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~-------  223 (292)
T 1qqe_A          153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD--AVAAARTLQ-------  223 (292)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC--HHHHHHHHH-------
T ss_pred             ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCC--HHHHHHHHH-------
Confidence                 567899999999999999999999999999988754       56778888887777  677777776       


Q ss_pred             ccccccccccCCCCCCCcccCC---------CCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHh
Q 014212          150 DSIDYQSIEVEPQYSGARIEGD---------VITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLR  208 (429)
Q Consensus       150 ~~~~~~~l~~~~~~~~~~~~~~---------~l~~~~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~  208 (429)
                           ++++++|.+........         .-..+.....+..+.....+++.. ..++..++..+.
T Consensus       224 -----~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~-~~~~~~~k~~~~  285 (292)
T 1qqe_A          224 -----EGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK-ITILNKIKESIQ  285 (292)
T ss_dssp             -----GGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH-HHHHHHHHHHHH
T ss_pred             -----HHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH-HHHHHHHHHHhh
Confidence                 77777887654321100         002233555666666666666654 345555555553

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.53  E-value=6.3e-14  Score=132.90  Aligned_cols=149  Identities=20%  Similarity=0.286  Sum_probs=130.0

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   92 (429)
                      +++.++.+|..++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..++++++.+|+++.+++.+|.++
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212           93 LAMGKFKEALKDFQQVKKLSP---NDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY  163 (429)
Q Consensus        93 ~~~g~~~eA~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~  163 (429)
                      ..+|++++|+..|+++++.+|   +++.++..++.+......  +..|..+...++..+|...+.++++..|..
T Consensus        82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~  153 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRL--RSQALDAFDGADYTAAITFLDKILEVCVWD  153 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHH--HHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence            999999999999999999999   999998888655443333  444555555556666666666777776654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.52  E-value=2.8e-14  Score=122.49  Aligned_cols=140  Identities=14%  Similarity=0.012  Sum_probs=117.5

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   89 (429)
                      +|...+.+..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+| ++..+..++
T Consensus         2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~   80 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA   80 (176)
T ss_dssp             ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence            4555667889999999999999999999999999999999999999999999999999999999999999 887766666


Q ss_pred             HHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCC
Q 014212           90 AAYL-AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYS  164 (429)
Q Consensus        90 ~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~  164 (429)
                      .+.. ..++..+|+..++++++.+|+++.++..++.++...|+  +++|+..++            ++++.+|.+.
T Consensus        81 ~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~--~~~A~~~~~------------~~l~~~p~~~  142 (176)
T 2r5s_A           81 KLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGR--DEEALELLW------------NILKVNLGAQ  142 (176)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHTTCTTTT
T ss_pred             HHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc--HHHHHHHHH------------HHHHhCcccC
Confidence            5433 33344568999999999999999999999999988887  777777777            7788877653

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.52  E-value=9.9e-15  Score=120.75  Aligned_cols=115  Identities=12%  Similarity=0.132  Sum_probs=104.4

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 014212           35 DLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN  114 (429)
Q Consensus        35 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~  114 (429)
                      ..|+++++++|++...++.+|.+++..|++++|+..|++++..+|+++.+|+.+|.++..+|++++|+..|+++++++|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            56888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212          115 DPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY  163 (429)
Q Consensus       115 ~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~  163 (429)
                      ++.+++.++.++..+++  +++|+..++            +++++.|..
T Consensus        85 ~~~~~~~lg~~~~~~g~--~~~A~~~~~------------~al~~~p~~  119 (142)
T 2xcb_A           85 EPRFPFHAAECHLQLGD--LDGAESGFY------------SARALAAAQ  119 (142)
T ss_dssp             CTHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHHHTC
T ss_pred             CcHHHHHHHHHHHHcCC--HHHHHHHHH------------HHHHhCCCC
Confidence            99999999999999998  778887777            777776643

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.52  E-value=2e-14  Score=123.19  Aligned_cols=128  Identities=11%  Similarity=0.119  Sum_probs=114.1

Q ss_pred             HHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHHcCCH--
Q 014212           22 NEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA-YLAMGKF--   98 (429)
Q Consensus        22 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~--   98 (429)
                      ..+...|++++|+..++++++.+|+++.++..+|.++...|++++|+.+|++++.++|+++.+++.+|.+ +...|++  
T Consensus        18 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           18 HQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             CCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence            3456789999999999999999999999999999999999999999999999999999999999999999 8899999  


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212           99 KEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY  163 (429)
Q Consensus        99 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~  163 (429)
                      ++|+..|+++++.+|+++.++..++.++...++  +++|+..++            ++++..|..
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~------------~al~~~p~~  148 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALMLLASDAFMQAN--YAQAIELWQ------------KVMDLNSPR  148 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHTCCTT
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccc--HHHHHHHHH------------HHHhhCCCC
Confidence            999999999999999999999999999988887  777777777            778777764

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.52  E-value=2.5e-14  Score=133.20  Aligned_cols=139  Identities=17%  Similarity=0.064  Sum_probs=128.1

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 014212           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA   90 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~   90 (429)
                      |.....++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..+++++..+|+....+...+.
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~  193 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI  193 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence            56778899999999999999999999999999999999999999999999999999999999999999987777788888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212           91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY  163 (429)
Q Consensus        91 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~  163 (429)
                      .+...++.++|+..|+++++.+|+++++++.++.++...|+  +++|+..+.            +++..+|.+
T Consensus       194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~--~~~A~~~l~------------~~l~~~p~~  252 (287)
T 3qou_A          194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGR--NEEALELLF------------GHLRXDLTA  252 (287)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCTTG
T ss_pred             HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHccc--HHHHHHHHH------------HHHhccccc
Confidence            89899999999999999999999999999999999988887  777777777            888888876

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.52  E-value=3e-14  Score=113.62  Aligned_cols=98  Identities=14%  Similarity=0.141  Sum_probs=88.4

Q ss_pred             HhcCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Q 014212           26 RAKKYSQAIDLYSQAIEL---NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL  102 (429)
Q Consensus        26 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~  102 (429)
                      ..|++++|+..|++++++   +|+++.++.++|.++..+|++++|+..|+++++++|+++.+++.+|.++..+|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            468999999999999999   69999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHH
Q 014212          103 KDFQQVKKLSPNDPDAAQKVK  123 (429)
Q Consensus       103 ~~~~~al~~~p~~~~~~~~l~  123 (429)
                      ..|+++++..|+++.+.....
T Consensus        82 ~~~~~al~~~p~~~~~~~~~~  102 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQSYKQ  102 (117)
T ss_dssp             HHHHHHHHHHCCCHHHHHTHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHH
Confidence            999999999999998764433

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.51  E-value=1.9e-13  Score=122.29  Aligned_cols=131  Identities=15%  Similarity=0.140  Sum_probs=117.2

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH------------------hhCHHHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAV---YYANRAFAHTK------------------LEEYGSAI   68 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~------------------~g~~~~A~   68 (429)
                      ++....+++.+|.+++..|++++|+..|+++++..|+++.   +++.+|.++..                  .|++++|+
T Consensus        37 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  116 (225)
T 2yhc_A           37 GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAF  116 (225)
T ss_dssp             STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHH
Confidence            3445689999999999999999999999999999999864   78999999886                  57999999


Q ss_pred             HHHHHHHHhCCCChHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHH
Q 014212           69 QDASKAIEIDPRYPKGY-----------------YRRGAAYLAMGKFKEALKDFQQVKKLSPNDP---DAAQKVKECEKA  128 (429)
Q Consensus        69 ~~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~l~~~~~~  128 (429)
                      ..|+++++.+|+++.++                 +.+|.+|...|++++|+..|+++++..|+++   +++..++.++..
T Consensus       117 ~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~  196 (225)
T 2yhc_A          117 SDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQ  196 (225)
T ss_dssp             HHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHH
Confidence            99999999999987665                 6789999999999999999999999999986   679999999999


Q ss_pred             HHhHHHHHhhcCCc
Q 014212          129 VKKLKFEEAIAVPE  142 (429)
Q Consensus       129 ~~~~~~~~a~~~~~  142 (429)
                      +|+  +++|+..++
T Consensus       197 ~g~--~~~A~~~~~  208 (225)
T 2yhc_A          197 MQM--NAQAEKVAK  208 (225)
T ss_dssp             TTC--HHHHHHHHH
T ss_pred             cCC--cHHHHHHHH
Confidence            998  677776665

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.51  E-value=1.6e-13  Score=131.09  Aligned_cols=128  Identities=13%  Similarity=0.239  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   92 (429)
                      .+.++..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++
T Consensus       216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  295 (368)
T 1fch_A          216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC  295 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           93 LAMGKFKEALKDFQQVKKLSPND-----------PDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        93 ~~~g~~~eA~~~~~~al~~~p~~-----------~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      ..+|++++|+..|++++++.|++           ..++..++.++..+|+  +++|...+.
T Consensus       296 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~  354 (368)
T 1fch_A          296 INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ--SDAYGAADA  354 (368)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTC--GGGHHHHHT
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCC--hHhHHHhHH
Confidence            99999999999999999999988           8899999999998887  455554444

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.51  E-value=2.1e-13  Score=127.80  Aligned_cols=131  Identities=14%  Similarity=0.152  Sum_probs=124.2

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   89 (429)
                      .|..+.++..+|..+...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.+++.+|
T Consensus       168 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~  247 (327)
T 3cv0_A          168 NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMA  247 (327)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           90 AAYLAMGKFKEALKDFQQVKKLSPN------------DPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        90 ~~~~~~g~~~eA~~~~~~al~~~p~------------~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      .++..+|++++|+..|+++++..|+            ++.++..++.++..+++  +++|...++
T Consensus       248 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~  310 (327)
T 3cv0_A          248 VSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR--PDLVELTYA  310 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC--HHHHHHHTT
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCC--HHHHHHHHH
Confidence            9999999999999999999999999            78999999999999888  777777776

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.50  E-value=1.7e-13  Score=127.82  Aligned_cols=140  Identities=10%  Similarity=-0.008  Sum_probs=114.7

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRA--FAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   88 (429)
                      |..+.++..+|.++.+.|++++|++.|+++++.+|++.......+  .++...|++++|+..|+++++.+|+++.+++++
T Consensus       127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~l  206 (291)
T 3mkr_A          127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQ  206 (291)
T ss_dssp             CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            566778889999999999999999999999999998865444333  333445889999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHH-hhcCCccccccccccccccccccCCCCC
Q 014212           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEE-AIAVPESERHSVADSIDYQSIEVEPQYS  164 (429)
Q Consensus        89 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~-a~~~~~~~~~~~a~~~~~~~l~~~~~~~  164 (429)
                      |.++..+|++++|+..|+++++++|++++++.+++.++...|+  ..+ +..+++            ++++++|++.
T Consensus       207 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~--~~eaa~~~~~------------~~~~~~P~~~  269 (291)
T 3mkr_A          207 AACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK--PPEVTNRYLS------------QLKDAHRSHP  269 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--CHHHHHHHHH------------HHHHHCTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--CHHHHHHHHH------------HHHHhCCCCh
Confidence            9999999999999999999999999999999999988888776  322 233333            7777887753

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.49  E-value=5.5e-13  Score=120.42  Aligned_cols=117  Identities=27%  Similarity=0.435  Sum_probs=112.1

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   88 (429)
                      .+|..+.++..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|+++.+++.+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l  213 (258)
T 3uq3_A          134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK  213 (258)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHH
Q 014212           89 GAAYLAMGKFKEALKDFQQVKKLS------PNDPDAAQKVKEC  125 (429)
Q Consensus        89 a~~~~~~g~~~eA~~~~~~al~~~------p~~~~~~~~l~~~  125 (429)
                      |.++..+|++++|+..|+++++++      |++..++..++.+
T Consensus       214 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          214 ATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            999999999999999999999999      9988888777654

>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural genomics, MCSG, Zn binding, hydrolase; 1.95A {Sphaerobacter thermophilus} SCOP: d.159.1.0

Probab=99.48  E-value=2.8e-14  Score=129.70  Aligned_cols=113  Identities=18%  Similarity=0.151  Sum_probs=85.8

Q ss_pred             CceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhcc
Q 014212          222 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYG  301 (429)
Q Consensus       222 ~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~  301 (429)
                      .++.++||+||++..+..+++...   ..+.++++||++|+|+++.+++.++.+++.     +++++||||.........
T Consensus         4 mri~~isDiHg~~~~l~~~l~~~~---~~d~ii~~GDl~~~g~~~~~~~~~l~~~~~-----~~~v~GNhD~~~~~~~~~   75 (246)
T 3rqz_A            4 MRILIISDVHANLVALEAVLSDAG---RVDDIWSLGDIVGYGPRPRECVELVRVLAP-----NISVIGNHDWACIGRLSL   75 (246)
T ss_dssp             CCEEEECCCTTCHHHHHHHHHHHC---SCSEEEECSCCSSSSSCHHHHHHHHHHHCS-----SEECCCHHHHHHTCCCCC
T ss_pred             cEEEEEeecCCCHHHHHHHHHhcc---CCCEEEECCCcCCCCCCHHHHHHHHHhcCC-----CEEEeCchHHHHhccCCc
Confidence            468999999999999999999877   345699999999999999999999988852     688999999887653221


Q ss_pred             --chh---hhhcccchHHHHHHHHHhccCcccceecCeEEEEecCcc
Q 014212          302 --FEG---EVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLF  343 (429)
Q Consensus       302 --~~~---~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~vH~gi~  343 (429)
                        +..   .........+.....+|+..+|.....+ +++++||++.
T Consensus        76 ~~~~~~~~~~~~~~~~~l~~~~~~~L~~lp~~~~~~-~i~~~Hg~p~  121 (246)
T 3rqz_A           76 DEFNPVARFASYWTTMQLQAEHLQYLESLPNRMIDG-DWTVVHGSPR  121 (246)
T ss_dssp             C--CGGGGCHHHHHHHHCCHHHHHHHHHCCSEEEET-TEEEESSCSS
T ss_pred             cccCHHHHHHHHHHHHHcCHHHHHHHHhCCcEEEEC-CEEEEECCcC
Confidence              111   1111112334456678999999987754 8999999873

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.48  E-value=1.9e-13  Score=124.94  Aligned_cols=118  Identities=20%  Similarity=0.209  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 014212           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL   93 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   93 (429)
                      +.++..+|..+...|++++|+..|+++++.+|.++.++..+|.++..+|++++|+..++++++.+|.++.+++.+|....
T Consensus        74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  153 (272)
T 3u4t_A           74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY  153 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence            45566777777777777777777777777777777777777777777777777777777777777777777777773333


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212           94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (429)
Q Consensus        94 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  131 (429)
                      ..+++++|+..|+++++++|+++.++..++.++..+++
T Consensus       154 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~  191 (272)
T 3u4t_A          154 YNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDP  191 (272)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCc
Confidence            34477777777777777777777777777666665553

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.47  E-value=3.9e-13  Score=127.36  Aligned_cols=132  Identities=13%  Similarity=0.068  Sum_probs=121.8

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC---CChHHH
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP---RYPKGY   85 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~   85 (429)
                      .+|..+.++..+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++..+|   +++.++
T Consensus        32 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  111 (359)
T 3ieg_A           32 GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAE  111 (359)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred             hCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHH
Confidence            46777889999999999999999999999999999999999999999999999999999999999999999   888888


Q ss_pred             HHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           86 YRR------------GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        86 ~~l------------a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      ..+            |.++...|++++|+..++++++..|+++.++..++.++...++  +++|+..++
T Consensus       112 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~  178 (359)
T 3ieg_A          112 SQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGE--PRKAISDLK  178 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence            877            7899999999999999999999999999999999999988887  677776666

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.46  E-value=1.8e-13  Score=117.50  Aligned_cols=134  Identities=13%  Similarity=0.082  Sum_probs=115.6

Q ss_pred             CCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHhCCCChHH
Q 014212            6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHT-KLEEYGSAIQDASKAIEIDPRYPKG   84 (429)
Q Consensus         6 ~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~   84 (429)
                      ....+|..+.+++.+|.++...|++++|+..|+++++.+| ++..+..++.+.. ..++..+|+..++++++.+|+++.+
T Consensus        32 al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~  110 (176)
T 2r5s_A           32 LSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFEL  110 (176)
T ss_dssp             SCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHH
Confidence            3456899999999999999999999999999999999999 8877766665533 3345557899999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPND--PDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      ++.+|.++..+|++++|+..|+++++.+|+.  +.++..++.++..+|+  .++|+..++
T Consensus       111 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~--~~~A~~~y~  168 (176)
T 2r5s_A          111 ACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ--GNAIASKYR  168 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS--SCHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC--CCcHHHHHH
Confidence            9999999999999999999999999999986  5699999999988887  455554443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.45  E-value=5.7e-13  Score=107.05  Aligned_cols=100  Identities=15%  Similarity=0.155  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014212           50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV  129 (429)
Q Consensus        50 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~  129 (429)
                      .++.+|.++.+.|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|+++.++..++.++...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212          130 KKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY  163 (429)
Q Consensus       130 ~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~  163 (429)
                      ++  +++|+..++            ++++.+|.+
T Consensus        99 g~--~~~A~~~~~------------~al~~~P~~  118 (121)
T 1hxi_A           99 HN--ANAALASLR------------AWLLSQPQY  118 (121)
T ss_dssp             HH--HHHHHHHHH------------HHHC-----
T ss_pred             CC--HHHHHHHHH------------HHHHhCcCC
Confidence            88  788888777            667766665

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.44  E-value=2.1e-12  Score=113.65  Aligned_cols=105  Identities=16%  Similarity=0.166  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh----------
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP----------   82 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----------   82 (429)
                      .+.+++.+|.++...|++++|+..|+++++.+|+++.+++++|.++..+|++++|+..|++++++.|.+.          
T Consensus        36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  115 (213)
T 1hh8_A           36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ  115 (213)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccc
Confidence            4679999999999999999999999999999999999999999999999999999999999999988877          


Q ss_pred             ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014212           83 ------KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD  117 (429)
Q Consensus        83 ------~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~  117 (429)
                            .+++++|.++..+|++++|+..|+++++++|++..
T Consensus       116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  156 (213)
T 1hh8_A          116 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH  156 (213)
T ss_dssp             CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred             cCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence                  99999999999999999999999999999998754

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.44  E-value=1.4e-12  Score=128.32  Aligned_cols=140  Identities=14%  Similarity=0.171  Sum_probs=99.8

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHhhCHHHHHHHHHHHHHh
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANR------------AFAHTKLEEYGSAIQDASKAIEI   77 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------g~~~~~~g~~~~A~~~~~~al~~   77 (429)
                      .|..+.++..+|..+...|++++|+..|+++++.+|++...+..+            |.++...|++++|+..|++++..
T Consensus       207 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~  286 (450)
T 2y4t_A          207 KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT  286 (450)
T ss_dssp             HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            344566777777777777777777777777777777777666555            77777777777777777777777


Q ss_pred             CCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCcccccccccccc
Q 014212           78 DPRYP----KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSID  153 (429)
Q Consensus        78 ~p~~~----~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~  153 (429)
                      .|+++    .++..+|.++..+|++++|+..++++++++|+++.++..++.++...++  +++|+..++           
T Consensus       287 ~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~--~~~A~~~~~-----------  353 (450)
T 2y4t_A          287 EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEM--YDEAIQDYE-----------  353 (450)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH-----------
T ss_pred             CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC--HHHHHHHHH-----------
Confidence            77764    3667777777777777777777777777777777777777777776666  566665555           


Q ss_pred             ccccccCCCC
Q 014212          154 YQSIEVEPQY  163 (429)
Q Consensus       154 ~~~l~~~~~~  163 (429)
                       ++++++|..
T Consensus       354 -~al~~~p~~  362 (450)
T 2y4t_A          354 -TAQEHNEND  362 (450)
T ss_dssp             -HHHTTSSSC
T ss_pred             -HHHHhCcch
Confidence             677776664

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.43  E-value=4.6e-13  Score=107.90  Aligned_cols=104  Identities=20%  Similarity=0.239  Sum_probs=95.6

Q ss_pred             CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014212           45 SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE  124 (429)
Q Consensus        45 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~  124 (429)
                      |..+..+..+|..++..|++++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|+++.++..++.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            44577899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHhhcCCccccccccccccccccccCCC
Q 014212          125 CEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQ  162 (429)
Q Consensus       125 ~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~  162 (429)
                      ++..+++  +++|+..++            ++++++|.
T Consensus        81 ~~~~~~~--~~~A~~~~~------------~al~~~p~  104 (126)
T 3upv_A           81 AQIAVKE--YASALETLD------------AARTKDAE  104 (126)
T ss_dssp             HHHHTTC--HHHHHHHHH------------HHHHHHHH
T ss_pred             HHHHHhC--HHHHHHHHH------------HHHHhCcc
Confidence            9999888  778877777            77777643

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.43  E-value=1.2e-12  Score=131.63  Aligned_cols=124  Identities=25%  Similarity=0.330  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 014212           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL   93 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   93 (429)
                      +.++..+|..+...|++++|+..|+++++.+|+ ..++..+|.++...|++++|+..+++++..+|+++.++..+|.++.
T Consensus       243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  321 (537)
T 3fp2_A          243 ALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF  321 (537)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence            445555666666666666666666666666555 5555555555555555666666666555555555555555555555


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcC
Q 014212           94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAV  140 (429)
Q Consensus        94 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  140 (429)
                      ..|++++|+..|+++++.+|+++.++..++.++...++  +++|+..
T Consensus       322 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~  366 (537)
T 3fp2_A          322 ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGK--FTESEAF  366 (537)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTC--HHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHH
Confidence            55555556655655555555555555555555555555  3444433

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.43  E-value=3.9e-13  Score=125.08  Aligned_cols=132  Identities=11%  Similarity=-0.021  Sum_probs=120.8

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   87 (429)
                      ..+|+++.+++.+|.++...|++++|+..|+++++.+|+........+..+...++.++|+..+++++..+|+++.+++.
T Consensus       145 ~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~  224 (287)
T 3qou_A          145 QLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQ  224 (287)
T ss_dssp             HHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHH
Confidence            35788899999999999999999999999999999999888778888888999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHhHHHHHhhcCC
Q 014212           88 RGAAYLAMGKFKEALKDFQQVKKLSPND--PDAAQKVKECEKAVKKLKFEEAIAVP  141 (429)
Q Consensus        88 la~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~~~a~~~~  141 (429)
                      +|.++..+|++++|+..|+++++.+|++  ..++..++.++..+|+  .++|...+
T Consensus       225 la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~--~~~a~~~~  278 (287)
T 3qou_A          225 LALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT--GDALASXY  278 (287)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT--TCHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC--CCcHHHHH
Confidence            9999999999999999999999999999  8899999999998886  34444433

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.42  E-value=5e-13  Score=108.34  Aligned_cols=94  Identities=19%  Similarity=0.210  Sum_probs=80.6

Q ss_pred             CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HH
Q 014212           47 NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD-------AA  119 (429)
Q Consensus        47 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~-------~~  119 (429)
                      .+.++.++|.++++.|+|++|+.+|++|++++|+++.+|+++|.+|..+|++++|+..|+++++++|++..       ++
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            46678899999999999999999999999999999999999999999999999999999999999988754       45


Q ss_pred             HHHHHHHHHHHhHHHHHhhcCCc
Q 014212          120 QKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus       120 ~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      ..+|.++..+++  +++|+..++
T Consensus        87 ~~lg~~~~~~~~--~~~A~~~~~  107 (127)
T 4gcn_A           87 SRAGNAFQKQND--LSLAVQWFH  107 (127)
T ss_dssp             HHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHHHcCC--HHHHHHHHH
Confidence            555555555555  566666555

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.41  E-value=4.5e-13  Score=136.85  Aligned_cols=130  Identities=15%  Similarity=0.179  Sum_probs=104.5

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 014212           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA   90 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~   90 (429)
                      |.++..+..+|..+.+.|++++|++.|+++++.+|++..++..++.++...|++++|+..+++++...|+++.++..+|.
T Consensus       302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~  381 (597)
T 2xpi_A          302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGI  381 (597)
T ss_dssp             GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence            67788899999999999999999999999998888887777777777777888888888888777777777777777777


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        91 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      +|...|++++|+..|+++++++|++..++..++.++...++  +++|+..++
T Consensus       382 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~  431 (597)
T 2xpi_A          382 YYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGE--HDQAISAYT  431 (597)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            88888888888888888777777777777777777777776  566665554

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.41  E-value=4.4e-13  Score=111.56  Aligned_cols=107  Identities=16%  Similarity=0.111  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC-------ChH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 014212           48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR-------YPK-----GYYRRGAAYLAMGKFKEALKDFQQVKKL----  111 (429)
Q Consensus        48 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~g~~~eA~~~~~~al~~----  111 (429)
                      +..+.++|..++..|+|++|+..|++|++++|+       +..     +|.++|.++..+|++++|+.+|++|+++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            567889999999999999999999999999999       444     9999999999999999999999999999    


Q ss_pred             ---CCCCHHHH----HHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCCcc
Q 014212          112 ---SPNDPDAA----QKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARI  168 (429)
Q Consensus       112 ---~p~~~~~~----~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~  168 (429)
                         +|++..+|    +++|.++..+++  +++|+..++            ++++++|+..+..-
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr--~eEAl~~y~------------kAlel~p~d~~~~~  140 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGR--GAEAMPEFK------------KVVEMIEERKGETP  140 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHHHHCCSCCT
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCC--HHHHHHHHH------------HHHhcCCCcHHHHH
Confidence               99999999    999999999998  788888888            89999888665433

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.41  E-value=1.9e-12  Score=132.28  Aligned_cols=138  Identities=14%  Similarity=0.117  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh------CCCC-hHHH
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI------DPRY-PKGY   85 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~-~~~~   85 (429)
                      +...+..+|..+.+.|++++|++.|+++++..|.++.+|..+|.++.+.|++++|++.|+++++.      +|++ ..+|
T Consensus       440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~  519 (597)
T 2xpi_A          440 THLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATW  519 (597)
T ss_dssp             CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHH
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHH
Confidence            33444444455555555555555555555555555555555555555555555555555555444      3332 3445


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCC
Q 014212           86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYS  164 (429)
Q Consensus        86 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~  164 (429)
                      ..+|.++...|++++|+..|+++++++|+++.++..++.++...|+  +++|...+            .++++++|...
T Consensus       520 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~--~~~A~~~~------------~~~l~~~p~~~  584 (597)
T 2xpi_A          520 ANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKI--PGLAITHL------------HESLAISPNEI  584 (597)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTC--HHHHHHHH------------HHHHHHCTTCH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC--HHHHHHHH------------HHHHhcCCCCh
Confidence            5555555555555555555555555555555555555555444444  34444433            36777776653

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.41  E-value=6.1e-12  Score=101.04  Aligned_cols=106  Identities=32%  Similarity=0.540  Sum_probs=101.3

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   89 (429)
                      .|.....+..+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|.++.+++.+|
T Consensus        31 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la  110 (136)
T 2fo7_A           31 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG  110 (136)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            45667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCC
Q 014212           90 AAYLAMGKFKEALKDFQQVKKLSPND  115 (429)
Q Consensus        90 ~~~~~~g~~~eA~~~~~~al~~~p~~  115 (429)
                      .++...|++++|...++++++.+|++
T Consensus       111 ~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A          111 NAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHccHHHHHHHHHHHHccCCCC
Confidence            99999999999999999999999863

>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A

Probab=99.40  E-value=3.2e-13  Score=123.20  Aligned_cols=118  Identities=19%  Similarity=0.097  Sum_probs=84.7

Q ss_pred             ceEEEccCCCCHHHHHHHHHHcC---CCC-CCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchh
Q 014212          223 HFTVCGDVHGQFYDLLNIFELNG---LPS-EENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNK  298 (429)
Q Consensus       223 ~~~v~GDihG~~~~l~~~l~~~~---~~~-~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~  298 (429)
                      ++.++||+||++..+.++++...   ..+ ..+.++++||++|+|+.+.+++.+|..++...  .+++++||||......
T Consensus         3 ~i~~isD~H~~~~~l~~~l~~~~~~~~~~~~~d~ii~~GD~~~~g~~~~~~~~~l~~l~~~~--~~~~v~GNhD~~~~~~   80 (252)
T 1nnw_A            3 YVAVLANIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPYPKEVIEVIKDLTKKE--NVKIIRGKYDQIIAMS   80 (252)
T ss_dssp             EEEEEECCTTCHHHHHHHHHHHHHHHHTTCCEEEEEEESCSSSSSSCHHHHHHHHHHHHHHS--CEEEECCHHHHHHHHS
T ss_pred             EEEEEeecCCCHHHHHHHHHHHHhhhhccCCCCEEEEeCccCCCCCCHHHHHHHHHhhHhhc--CeeEEecchHHHhhcc
Confidence            48899999999999999887654   321 34579999999999999999999999886433  4899999999876542


Q ss_pred             hccch--hh------------hhcccchHHHHHHHHHhccCccccee--cC-eEEEEecCc
Q 014212          299 IYGFE--GE------------VRSKLSETFVELFAEVFCCLPLAHVL--NQ-KVFVVHGGL  342 (429)
Q Consensus       299 ~~~~~--~~------------~~~~~~~~~~~~~~~~~~~lp~~~~~--~~-~~~~vH~gi  342 (429)
                      ...+.  ..            ........+.....+|+..+|....+  ++ +++++||++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~lp~~~~~~~~~~~i~~~H~~p  141 (252)
T 1nnw_A           81 DPHATDPGYIDKLELPGHVKKALKFTWEKLGHEGREYLRDLPIYLVDKIGGNEVFGVYGSP  141 (252)
T ss_dssp             CTTCSSSGGGGGSSCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCEEEEETTEEEEEESSCS
T ss_pred             ccccCCcccccchhhhHHHHHHHHHHHHHCCHHHHHHHHhCCceEEEeeCCcEEEEEcCCC
Confidence            21110  00            00001223455567899999987654  34 899999976

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.40  E-value=1e-12  Score=120.06  Aligned_cols=132  Identities=21%  Similarity=0.228  Sum_probs=120.4

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh---
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELN--------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI---   77 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---   77 (429)
                      .+|..+.++..+|..+...|++++|+..|+++++..        |....++.++|.++..+|++++|+..+++++.+   
T Consensus        38 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  117 (283)
T 3edt_B           38 DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK  117 (283)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            458899999999999999999999999999999873        566788999999999999999999999999998   


Q ss_pred             -----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           78 -----DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL--------SPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        78 -----~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                           +|....++.++|.++..+|++++|+..|++++++        .|....++..++.++...++  +++|+..++
T Consensus       118 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~  193 (283)
T 3edt_B          118 VLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK--YQDAETLYK  193 (283)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred             HcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence                 4677889999999999999999999999999999        67778889999999999988  777777776

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.40  E-value=1.8e-12  Score=120.82  Aligned_cols=138  Identities=15%  Similarity=0.100  Sum_probs=84.2

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   89 (429)
                      +|+++.+++.+|..+...|++++|++.|++     |.+..++..+|.++.++|++++|+..++++++.+|++.......+
T Consensus        97 ~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a  171 (291)
T 3mkr_A           97 DVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATA  171 (291)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHH
Confidence            355556666666666666666666666665     566666666666666666666666666666666666543322222


Q ss_pred             --HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCC
Q 014212           90 --AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA  166 (429)
Q Consensus        90 --~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~  166 (429)
                        ..+...|++++|+..|+++++..|+++.++..++.++..+|+  +++|...++            ++++.+|.+..+
T Consensus       172 ~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--~~eA~~~l~------------~al~~~p~~~~~  236 (291)
T 3mkr_A          172 WVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGR--WEAAEGVLQ------------EALDKDSGHPET  236 (291)
T ss_dssp             HHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCTTCHHH
T ss_pred             HHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--HHHHHHHHH------------HHHHhCCCCHHH
Confidence              222233566666666666666666666666666666666665  455555555            889888876443

>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric AP4A hydrolase, phosphodiesterase, binding, Mn2+ binding, hydrolase; 1.90A {Streptococcus pneumoniae} PDB: 3qfn_A 3qfo_A*

Probab=99.40  E-value=1.5e-13  Score=126.32  Aligned_cols=114  Identities=17%  Similarity=0.107  Sum_probs=85.7

Q ss_pred             ceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhc--
Q 014212          223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIY--  300 (429)
Q Consensus       223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~--  300 (429)
                      ++.+++|+||++..|.++++...... .+.++++||+|++|+.+.+|+.+|.+++     .+++++||||........  
T Consensus        13 ~i~~iSDiHg~~~~l~~vl~~~~~~~-~D~ii~~GDlv~~g~~~~~~~~~l~~~~-----~~~~v~GNhD~~~~~~~~~~   86 (270)
T 3qfm_A           13 KIALLSDIHGNTTALEAVLADARQLG-VDEYWLLGDILMPGTGRRRILDLLDQLP-----ITARVLGNWEDSLWHGVRKE   86 (270)
T ss_dssp             EEEEECCCTTCHHHHHHHHHHHHHTT-CCEEEECSCCSSSSSCSHHHHHHHHTSC-----EEEECCCHHHHHHHHHHTTC
T ss_pred             EEEEEecCCCCHHHHHHHHHHHHhcC-CCEEEEcCCCCCCCCCHHHHHHHHHccC-----CEEEEcCChHHHHHHhhccc
Confidence            58999999999999999998775433 4569999999999999999999998773     478899999998776432  


Q ss_pred             -cchhhhhc------cc-chHHHHHHHHHhccCccccee--cC-eEEEEecCc
Q 014212          301 -GFEGEVRS------KL-SETFVELFAEVFCCLPLAHVL--NQ-KVFVVHGGL  342 (429)
Q Consensus       301 -~~~~~~~~------~~-~~~~~~~~~~~~~~lp~~~~~--~~-~~~~vH~gi  342 (429)
                       +|......      .+ ...+.....+|++.||....+  ++ ++++|||..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~~L~~LP~~~~~~~~g~~i~lvHg~p  139 (270)
T 3qfm_A           87 LDSTRPSQRYLLRQCQYVLEEISLEEIEVLHNQPLQIHRQFGDLTVGISHHLP  139 (270)
T ss_dssp             SCTTSHHHHHHHHHHHHHHTTSCHHHHHHHHSCCSEEEEEETTEEEEEESSBT
T ss_pred             cCCCcHHHHHHHHHHHHHHHHcCHHHHHHHHhCCCceEEEECCcEEEEEECCC
Confidence             23221110      11 123445667999999998755  44 899999643

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.40  E-value=5.1e-12  Score=118.55  Aligned_cols=131  Identities=14%  Similarity=0.007  Sum_probs=119.4

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAV-YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   88 (429)
                      +|....+|..+|..+...|++++|.+.|++++++.|.++. +|.++|.++.+.|++++|...|+++++.+|.+..+|...
T Consensus        95 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~  174 (308)
T 2ond_A           95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA  174 (308)
T ss_dssp             TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHH
T ss_pred             CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            6788899999999999999999999999999999999987 999999999999999999999999999999999888877


Q ss_pred             HHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           89 GAAYLA-MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        89 a~~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      +..... +|++++|...|+++++..|+++.++..++..+...|+  +++|...++
T Consensus       175 a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~--~~~A~~~~~  227 (308)
T 2ond_A          175 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE--DNNTRVLFE  227 (308)
T ss_dssp             HHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC--HHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence            766543 7999999999999999999999999999988877776  677777776

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.39  E-value=1.1e-12  Score=110.90  Aligned_cols=109  Identities=22%  Similarity=0.243  Sum_probs=100.5

Q ss_pred             CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014212           44 NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK  123 (429)
Q Consensus        44 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~  123 (429)
                      ++.++..++.+|.+++..|++++|+..|+++++++|+++.+|+++|.+|..+|++++|+..|+++++++|+++.+++.++
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   86 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG   86 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            44567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCC
Q 014212          124 ECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA  166 (429)
Q Consensus       124 ~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~  166 (429)
                      .++..+++  +++|+..++            ++++++|.+..+
T Consensus        87 ~~~~~~g~--~~~A~~~~~------------~al~~~p~~~~~  115 (164)
T 3sz7_A           87 LARFDMAD--YKGAKEAYE------------KGIEAEGNGGSD  115 (164)
T ss_dssp             HHHHHTTC--HHHHHHHHH------------HHHHHHSSSCCH
T ss_pred             HHHHHccC--HHHHHHHHH------------HHHHhCCCchHH
Confidence            99999887  778877777            888888877553

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.39  E-value=8.1e-13  Score=120.74  Aligned_cols=127  Identities=17%  Similarity=0.096  Sum_probs=114.8

Q ss_pred             HHHHhcCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Q 014212           23 EAFRAKKYSQAIDLYSQAIELN----SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKF   98 (429)
Q Consensus        23 ~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~   98 (429)
                      .+...|++++|+..|+++++..    |.++.++..+|.++...|++++|+..|++++.++|+++.++..+|.++...|++
T Consensus        14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~   93 (275)
T 1xnf_A           14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF   93 (275)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred             ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence            3445689999999999999973    557889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212           99 KEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY  163 (429)
Q Consensus        99 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~  163 (429)
                      ++|+..|+++++++|+++.++..++.++...++  +++|+..++            ++++..|..
T Consensus        94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~------------~a~~~~~~~  144 (275)
T 1xnf_A           94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR--DKLAQDDLL------------AFYQDDPND  144 (275)
T ss_dssp             HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCTTC
T ss_pred             HHHHHHHHHHHhcCccccHHHHHHHHHHHHhcc--HHHHHHHHH------------HHHHhCCCC
Confidence            999999999999999999999999999998887  777877777            667666654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.39  E-value=8.3e-13  Score=134.77  Aligned_cols=124  Identities=16%  Similarity=0.157  Sum_probs=98.3

Q ss_pred             hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 014212           27 AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQ  106 (429)
Q Consensus        27 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~  106 (429)
                      .|++++|++.|+++++.+|+++.++..+|.++..+|++++|++.|+++++++|+++.+++.+|.+|..+|++++|++.|+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCC
Q 014212          107 QVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYS  164 (429)
Q Consensus       107 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~  164 (429)
                      ++++++|+++.++..++.++...++  +++|+..++            ++++.+|...
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~------------~al~~~p~~~  125 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALEDAGQ--AEAAAAAYT------------RAHQLLPEEP  125 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCTTCH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH------------HHHHhCCCCH
Confidence            9999999999999999999999888  778877777            7777777653

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.39  E-value=7.5e-13  Score=123.94  Aligned_cols=127  Identities=17%  Similarity=0.204  Sum_probs=118.8

Q ss_pred             HHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Q 014212           23 EAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL  102 (429)
Q Consensus        23 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~  102 (429)
                      .+...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+
T Consensus       147 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  226 (327)
T 3cv0_A          147 FFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL  226 (327)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence            58889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212          103 KDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY  163 (429)
Q Consensus       103 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~  163 (429)
                      ..|+++++..|+++.++..++.++...++  +++|+..++            +++...|..
T Consensus       227 ~~~~~a~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~------------~a~~~~~~~  273 (327)
T 3cv0_A          227 DAYNRALDINPGYVRVMYNMAVSYSNMSQ--YDLAAKQLV------------RAIYMQVGG  273 (327)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHHTTS
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHhcc--HHHHHHHHH------------HHHHhCCcc
Confidence            99999999999999999999999988887  778877777            667766664

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.38  E-value=1e-11  Score=124.93  Aligned_cols=130  Identities=21%  Similarity=0.252  Sum_probs=122.9

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   89 (429)
                      +|. ..++..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|
T Consensus       273 ~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la  351 (537)
T 3fp2_A          273 HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLA  351 (537)
T ss_dssp             CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHH
T ss_pred             CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            444 7889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      .++..+|++++|+..|+++++..|+++.++..++.++...++  +++|+..++
T Consensus       352 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~  402 (537)
T 3fp2_A          352 CLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGD--FDTAIKQYD  402 (537)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC--HHHHHHHHH
Confidence            999999999999999999999999999999999999988887  677776666

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.37  E-value=9e-12  Score=98.58  Aligned_cols=101  Identities=11%  Similarity=0.199  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014212           31 SQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKK  110 (429)
Q Consensus        31 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~  110 (429)
                      ++|+..|+++++.+|+++.+++++|.++...|++++|+..|++++.++|+++.+|+.+|.++..+|++++|+..|+++++
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            36889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCC--CHHHHHHHHHHHHHHHh
Q 014212          111 LSPN--DPDAAQKVKECEKAVKK  131 (429)
Q Consensus       111 ~~p~--~~~~~~~l~~~~~~~~~  131 (429)
                      +.|+  +..+...+......+++
T Consensus        82 ~~~~~~~~~~~~~l~~~l~~l~~  104 (115)
T 2kat_A           82 AAQSRGDQQVVKELQVFLRRLAR  104 (115)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             hccccccHHHHHHHHHHHHHhcc
Confidence            9884  45556666666655554

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.37  E-value=1e-11  Score=123.03  Aligned_cols=144  Identities=16%  Similarity=0.126  Sum_probs=117.4

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL---------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID--   78 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--   78 (429)
                      .+..+..+..+|.++..+|++++|++.|++|+++         +|....+|.++|.+|..+|++++|+.++++++++.  
T Consensus        47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~  126 (472)
T 4g1t_A           47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK  126 (472)
T ss_dssp             ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence            3445677888999999999999999999999986         67788899999999999999999999999999873  


Q ss_pred             ------CCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccc
Q 014212           79 ------PRYPKGYYRRGAAYLAMG--KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVAD  150 (429)
Q Consensus        79 ------p~~~~~~~~la~~~~~~g--~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~  150 (429)
                            +..+.++.++|.++...|  ++++|+.+|++|++++|++++++..++.+...++..           +...+|.
T Consensus       127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~-----------~~~~~al  195 (472)
T 4g1t_A          127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNW-----------PPSQNAI  195 (472)
T ss_dssp             SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHS-----------CCCCCTH
T ss_pred             cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc-----------hHHHHHH
Confidence                  356788999998887654  699999999999999999999999999887766541           2334445


Q ss_pred             cccccccccCCCCC
Q 014212          151 SIDYQSIEVEPQYS  164 (429)
Q Consensus       151 ~~~~~~l~~~~~~~  164 (429)
                      ..+.++++++|...
T Consensus       196 ~~~~~al~l~p~~~  209 (472)
T 4g1t_A          196 DPLRQAIRLNPDNQ  209 (472)
T ss_dssp             HHHHHHHHHCSSCH
T ss_pred             HHHHHHhhcCCcch
Confidence            55556666666543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.37  E-value=4e-13  Score=105.14  Aligned_cols=91  Identities=32%  Similarity=0.389  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC------hHHHHH
Q 014212           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY------PKGYYR   87 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~   87 (429)
                      +.++..+|..++..|++++|++.|+++++++|+++.++.++|.++..+|++++|+..++++++++|++      ..+++.
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~   83 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR   83 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence            45555666666666666666666666666666666666666666666666666666666666666655      555555


Q ss_pred             HHHHHHHcCCHHHHHHH
Q 014212           88 RGAAYLAMGKFKEALKD  104 (429)
Q Consensus        88 la~~~~~~g~~~eA~~~  104 (429)
                      +|.++..+|++++|+..
T Consensus        84 ~~~~~~~~~~~~~a~~~  100 (111)
T 2l6j_A           84 LELAQGAVGSVQIPVVE  100 (111)
T ss_dssp             HHHHHHHHHCCCCCSSS
T ss_pred             HHHHHHHHHhHhhhHhH
Confidence            55555555555444443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.36  E-value=7.4e-12  Score=117.45  Aligned_cols=141  Identities=13%  Similarity=0.043  Sum_probs=119.4

Q ss_pred             ccHhHHHHHHHHHHHHHH-------hcCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHH
Q 014212            9 SSVSRAEELKALANEAFR-------AKKY-------SQAIDLYSQAIE-LNSQNAVYYANRAFAHTKLEEYGSAIQDASK   73 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~   73 (429)
                      .+|..+.+|+.+|..+..       .|++       ++|+..|++|++ ++|++..+|..+|.++...|++++|...|++
T Consensus        45 ~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~  124 (308)
T 2ond_A           45 VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNR  124 (308)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            368889999999999874       4885       999999999999 7999999999999999999999999999999


Q ss_pred             HHHhCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHhHHHHHhhcCCcccccccccc
Q 014212           74 AIEIDPRYPK-GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA-VKKLKFEEAIAVPESERHSVADS  151 (429)
Q Consensus        74 al~~~p~~~~-~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~~~a~~~~~~~~~~~a~~  151 (429)
                      +++++|.++. +|..+|.++..+|++++|...|++|++..|.+..++...+.+... .++  +++|...++         
T Consensus       125 al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~--~~~A~~~~~---------  193 (308)
T 2ond_A          125 LLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD--KSVAFKIFE---------  193 (308)
T ss_dssp             HHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCC--HHHHHHHHH---------
T ss_pred             HHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC--HHHHHHHHH---------
Confidence            9999999987 999999999999999999999999999999988777655443321 233  445554444         


Q ss_pred             ccccccccCCCC
Q 014212          152 IDYQSIEVEPQY  163 (429)
Q Consensus       152 ~~~~~l~~~~~~  163 (429)
                         ++++..|..
T Consensus       194 ---~al~~~p~~  202 (308)
T 2ond_A          194 ---LGLKKYGDI  202 (308)
T ss_dssp             ---HHHHHHTTC
T ss_pred             ---HHHHhCCCc
Confidence               788877753

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.36  E-value=1.6e-13  Score=130.68  Aligned_cols=126  Identities=17%  Similarity=0.173  Sum_probs=116.4

Q ss_pred             HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHH
Q 014212           26 RAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---------------PKGYYRRGA   90 (429)
Q Consensus        26 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~   90 (429)
                      ..+++++|++.|+++++.+|.++.++.++|.+++..|++++|+..|++++.++|.+               ..+|+++|.
T Consensus       125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  204 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM  204 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence            35677889999999999999999999999999999999999999999999999998               699999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCC
Q 014212           91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSG  165 (429)
Q Consensus        91 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~  165 (429)
                      +|..+|++++|+.+|+++++++|+++.+++.++.++..+++  +++|+..++            ++++++|.+..
T Consensus       205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--~~~A~~~~~------------~al~l~P~~~~  265 (336)
T 1p5q_A          205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND--FELARADFQ------------KVLQLYPNNKA  265 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCSSCHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC--HHHHHHHHH------------HHHHHCCCCHH
Confidence            99999999999999999999999999999999999999888  788887777            88888887643

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.35  E-value=3.7e-12  Score=103.73  Aligned_cols=107  Identities=21%  Similarity=0.255  Sum_probs=97.6

Q ss_pred             HhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014212           42 ELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK  121 (429)
Q Consensus        42 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~  121 (429)
                      ..+|.++..++.+|.+++..|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|+++++++|+++.++..
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   82 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   82 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            45688899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCC
Q 014212          122 VKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQ  162 (429)
Q Consensus       122 l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~  162 (429)
                      ++.++..+++  +++|+..++            +++++.|.
T Consensus        83 l~~~~~~~~~--~~~A~~~~~------------~a~~~~p~  109 (137)
T 3q49_B           83 LGQCQLEMES--YDEAIANLQ------------RAYSLAKE  109 (137)
T ss_dssp             HHHHHHHTTC--HHHHHHHHH------------HHHHHHHH
T ss_pred             HHHHHHHHhh--HHHHHHHHH------------HHHHHChh
Confidence            9999999887  777777777            77777665

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.35  E-value=2e-12  Score=118.05  Aligned_cols=133  Identities=21%  Similarity=0.235  Sum_probs=116.8

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--   77 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--   77 (429)
                      ..+|..+.++..+|.++...|++++|+.+|+++++.        +|....++.++|.++..+|++++|+..+++++.+  
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  158 (283)
T 3edt_B           79 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYA  158 (283)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            456888999999999999999999999999999998        4667889999999999999999999999999998  


Q ss_pred             ------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------------------------
Q 014212           78 ------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS---------------------------------------  112 (429)
Q Consensus        78 ------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~---------------------------------------  112 (429)
                            .|....++..+|.++..+|++++|+..+++++++.                                       
T Consensus       159 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (283)
T 3edt_B          159 TRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYG  238 (283)
T ss_dssp             HHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC--------
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence                  77778899999999999999999999999999872                                       


Q ss_pred             ----------CCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212          113 ----------PNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus       113 ----------p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                                |....++..++.++...|+  +++|...++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~  276 (283)
T 3edt_B          239 SWYKACKVDSPTVNTTLRSLGALYRRQGK--LEAAHTLED  276 (283)
T ss_dssp             ----CCCCCCHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence                      3445577778888877777  667766655

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.35  E-value=2.8e-12  Score=119.49  Aligned_cols=137  Identities=13%  Similarity=0.061  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC------
Q 014212           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY------   81 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------   81 (429)
                      +..+...|..+...|++++|++.|++++++.+.      .+.++.++|.+|..+|++++|+.+|++|+.+.|..      
T Consensus        37 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~  116 (292)
T 1qqe_A           37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG  116 (292)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            345667788899999999999999999998532      26789999999999999999999999999998754      


Q ss_pred             hHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccc
Q 014212           82 PKGYYRRGAAYLAM-GKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDY  154 (429)
Q Consensus        82 ~~~~~~la~~~~~~-g~~~eA~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~  154 (429)
                      +.++.++|.+|..+ |++++|+.+|++|+++.|..      ..++..++.++..+++  +++|+..++            
T Consensus       117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~------------  182 (292)
T 1qqe_A          117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ--YIEASDIYS------------  182 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH------------
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCC--HHHHHHHHH------------
Confidence            46899999999996 99999999999999998864      4568888888888887  778887777            


Q ss_pred             cccccCCCCC
Q 014212          155 QSIEVEPQYS  164 (429)
Q Consensus       155 ~~l~~~~~~~  164 (429)
                      +++++.|...
T Consensus       183 ~al~~~~~~~  192 (292)
T 1qqe_A          183 KLIKSSMGNR  192 (292)
T ss_dssp             HHHHTTSSCT
T ss_pred             HHHHHHhcCC
Confidence            7777766653

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.34  E-value=1.9e-12  Score=129.19  Aligned_cols=119  Identities=16%  Similarity=0.097  Sum_probs=72.1

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   89 (429)
                      .|....++..+|..+...|++++|+..|+++++..|.+..++..+|.++...|++++|+..+++++...|+++.+++.+|
T Consensus       300 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la  379 (514)
T 2gw1_A          300 DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFA  379 (514)
T ss_dssp             CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHH
Confidence            34445556666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH
Q 014212           90 AAYLAMGKFKEALKDFQQVKKLSPNDPD------AAQKVKECEKA  128 (429)
Q Consensus        90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~------~~~~l~~~~~~  128 (429)
                      .++...|++++|+..|+++++..|+++.      ++..++.++..
T Consensus       380 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~  424 (514)
T 2gw1_A          380 EILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTR  424 (514)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhh
Confidence            6666666666666666666666555543      55555555555

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.33  E-value=2.1e-11  Score=91.59  Aligned_cols=86  Identities=31%  Similarity=0.415  Sum_probs=61.8

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 014212           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA   90 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~   90 (429)
                      +..+..++.+|..+...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..++++++++|+++.++..+|.
T Consensus         6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~   85 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN   85 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            34566777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHcC
Q 014212           91 AYLAMG   96 (429)
Q Consensus        91 ~~~~~g   96 (429)
                      ++..+|
T Consensus        86 ~~~~~g   91 (91)
T 1na3_A           86 AKQKQG   91 (91)
T ss_dssp             HHHHHC
T ss_pred             HHHhcC
Confidence            766543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.33  E-value=1.7e-11  Score=112.46  Aligned_cols=125  Identities=16%  Similarity=0.239  Sum_probs=112.8

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCCCChHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRYPKGY   85 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~   85 (429)
                      +|.++.+++.+|..+...|++++|+.+|+++++  |.++.+++++|.++..    .+++++|+.+|+++++.+  ++.++
T Consensus         2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~   77 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC   77 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence            467789999999999999999999999999998  8889999999999999    999999999999999985  89999


Q ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HHhHHHHHhhcCCc
Q 014212           86 YRRGAAYLA----MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA----VKKLKFEEAIAVPE  142 (429)
Q Consensus        86 ~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~~~a~~~~~  142 (429)
                      +.+|.+|..    .+++++|+..|+++++.  +++.++..++.++..    .++  +++|+..++
T Consensus        78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~--~~~A~~~~~  138 (273)
T 1ouv_A           78 HLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRD--FKKAVEYFT  138 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCC--HHHHHHHHH
T ss_pred             HHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccC--HHHHHHHHH
Confidence            999999999    99999999999999997  489999999999877    665  667776666

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.33  E-value=8.6e-12  Score=124.46  Aligned_cols=175  Identities=17%  Similarity=0.152  Sum_probs=144.9

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   89 (429)
                      .|..+.++..+|..+...|++++|+..|+++++.+|. ..++..+|.++...|++++|+..+++++..+|.++.++..+|
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  311 (514)
T 2gw1_A          233 KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRG  311 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHH
Confidence            3888999999999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCCccc
Q 014212           90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIE  169 (429)
Q Consensus        90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~  169 (429)
                      .++...|++++|+..|+++++..|+++.++..++.++...++  +++|+..++            ++++..|.....   
T Consensus       312 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~------------~~~~~~~~~~~~---  374 (514)
T 2gw1_A          312 QMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENK--FDDCETLFS------------EAKRKFPEAPEV---  374 (514)
T ss_dssp             HHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTC--HHHHHHHHH------------HHHHHSTTCSHH---
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCC--HHHHHHHHH------------HHHHHcccCHHH---
Confidence            999999999999999999999999999999999988877776  667766666            666666653221   


Q ss_pred             CCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCC
Q 014212          170 GDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPS  212 (429)
Q Consensus       170 ~~~l~~~~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~  212 (429)
                              ...+...+...+.  ...+...+..+.+.....+.
T Consensus       375 --------~~~la~~~~~~~~--~~~A~~~~~~a~~~~~~~~~  407 (514)
T 2gw1_A          375 --------PNFFAEILTDKND--FDKALKQYDLAIELENKLDG  407 (514)
T ss_dssp             --------HHHHHHHHHHTTC--HHHHHHHHHHHHHHHHTSSS
T ss_pred             --------HHHHHHHHHHCCC--HHHHHHHHHHHHHhhhccch
Confidence                    2222333333332  34466777777666665544

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.32  E-value=1.1e-12  Score=114.62  Aligned_cols=134  Identities=15%  Similarity=0.074  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh-------------
Q 014212           16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP-------------   82 (429)
Q Consensus        16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-------------   82 (429)
                      .....+......|++++|.+.+....+..+..+..+..+|.+++..|++++|+..|++++.+.|.++             
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~   85 (198)
T 2fbn_A            6 HHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKN   85 (198)
T ss_dssp             ----------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHH
T ss_pred             cccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence            3444556667788999999988888887788889999999999999999999999999999999987             


Q ss_pred             ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCcccccccccccccccccc
Q 014212           83 ---KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEV  159 (429)
Q Consensus        83 ---~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~  159 (429)
                         .+++++|.++..+|++++|+.+++++++++|+++.+++.++.++..+++  +++|+..++            +++++
T Consensus        86 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~--~~~A~~~~~------------~al~~  151 (198)
T 2fbn_A           86 IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF--LEEAKENLY------------KAASL  151 (198)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC--HHHHHHHHH------------HHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccc--HHHHHHHHH------------HHHHH
Confidence               8999999999999999999999999999999999999999999999988  778877777            77777


Q ss_pred             CCCC
Q 014212          160 EPQY  163 (429)
Q Consensus       160 ~~~~  163 (429)
                      +|..
T Consensus       152 ~p~~  155 (198)
T 2fbn_A          152 NPNN  155 (198)
T ss_dssp             STTC
T ss_pred             CCCc
Confidence            7765

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.31  E-value=2.7e-12  Score=100.02  Aligned_cols=98  Identities=20%  Similarity=0.256  Sum_probs=90.4

Q ss_pred             hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHH
Q 014212           43 LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN--DPDAAQ  120 (429)
Q Consensus        43 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~  120 (429)
                      ++|+++.++..+|.++...|++++|+..++++++.+|.++.+++.+|.++..+|++++|+..|+++++..|+  +..++.
T Consensus         1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   80 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA   80 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence            368889999999999999999999999999999999999999999999999999999999999999999999  999999


Q ss_pred             HHHHHHHHH-HhHHHHHhhcCCc
Q 014212          121 KVKECEKAV-KKLKFEEAIAVPE  142 (429)
Q Consensus       121 ~l~~~~~~~-~~~~~~~a~~~~~  142 (429)
                      .++.++..+ ++  +++|+..++
T Consensus        81 ~l~~~~~~~~~~--~~~A~~~~~  101 (112)
T 2kck_A           81 AKADALRYIEGK--EVEAEIAEA  101 (112)
T ss_dssp             HHHHHHTTCSSC--SHHHHHHHH
T ss_pred             HHHHHHHHHhCC--HHHHHHHHH
Confidence            999988777 76  566666555

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.31  E-value=3.5e-12  Score=118.44  Aligned_cols=133  Identities=26%  Similarity=0.286  Sum_probs=118.2

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELN--------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--   77 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--   77 (429)
                      ...+..+.++..+|..+...|++++|+..|++++++.        |....++.++|.++...|++++|+..+++++.+  
T Consensus       105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  184 (311)
T 3nf1_A          105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ  184 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            3468889999999999999999999999999999874        556788999999999999999999999999998  


Q ss_pred             ------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------------------------
Q 014212           78 ------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL----------------------------------------  111 (429)
Q Consensus        78 ------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~----------------------------------------  111 (429)
                            .|....++..+|.++..+|++++|+..|+++++.                                        
T Consensus       185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  264 (311)
T 3nf1_A          185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG  264 (311)
T ss_dssp             HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence                  6777889999999999999999999999999985                                        


Q ss_pred             ---------CCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212          112 ---------SPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus       112 ---------~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                               .|....++..++.++...|+  +++|+..++
T Consensus       265 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~  302 (311)
T 3nf1_A          265 GWYKACKVDSPTVTTTLKNLGALYRRQGK--FEAAETLEE  302 (311)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred             HHHhhcCCCCchHHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence                     35667788889999888887  677777666

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.31  E-value=1.2e-11  Score=125.75  Aligned_cols=158  Identities=8%  Similarity=0.003  Sum_probs=130.9

Q ss_pred             cccHhHHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh--CHHHHHHHHHHHH
Q 014212            8 NSSVSRAEELKALANEAFRAKK----------YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE--EYGSAIQDASKAI   75 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al   75 (429)
                      ..+|+...+|..++.++...++          +++|++.++++++.+|++..+|+.++.++.+++  ++++|++++.+++
T Consensus        57 ~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l  136 (567)
T 1dce_A           57 GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFL  136 (567)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred             HHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHH
Confidence            4578889999999999999998          999999999999999999999999999999999  7799999999999


Q ss_pred             HhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhc--CCccccccccccc
Q 014212           76 EIDPRYPKGYYRRGAAYLAMG-KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIA--VPESERHSVADSI  152 (429)
Q Consensus        76 ~~~p~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~--~~~~~~~~~a~~~  152 (429)
                      +++|.+..+|...+.+...+| .+++|++++.++++.+|++..+|..++.++..+...  ..+..  ....+...++...
T Consensus       137 ~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~--~~~~~~~~~~~~~~~eel~~  214 (567)
T 1dce_A          137 EADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ--PDSGPQGRLPENVLLKELEL  214 (567)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCC--CCSSSCCSSCHHHHHHHHHH
T ss_pred             hhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccc--ccccccccccHHHHHHHHHH
Confidence            999999999999999999999 999999999999999999999999999998776210  00000  0001122333333


Q ss_pred             cccccccCCCCCCCc
Q 014212          153 DYQSIEVEPQYSGAR  167 (429)
Q Consensus       153 ~~~~l~~~~~~~~~~  167 (429)
                      +.+++..+|....+.
T Consensus       215 ~~~ai~~~P~~~saW  229 (567)
T 1dce_A          215 VQNAFFTDPNDQSAW  229 (567)
T ss_dssp             HHHHHHHCSSCSHHH
T ss_pred             HHHHHhhCCCCccHH
Confidence            447888888765543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.28  E-value=1.8e-11  Score=95.52  Aligned_cols=93  Identities=16%  Similarity=0.233  Sum_probs=83.3

Q ss_pred             CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 014212           47 NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQ  120 (429)
Q Consensus        47 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~  120 (429)
                      ++.++..+|.+++..|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++      ..++.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            467889999999999999999999999999999999999999999999999999999999999999999      88888


Q ss_pred             HHHHHHHHHHhHHHHHhhcCC
Q 014212          121 KVKECEKAVKKLKFEEAIAVP  141 (429)
Q Consensus       121 ~l~~~~~~~~~~~~~~a~~~~  141 (429)
                      .++.++..+++  ++.|+..+
T Consensus        83 ~~~~~~~~~~~--~~~a~~~~  101 (111)
T 2l6j_A           83 RLELAQGAVGS--VQIPVVEV  101 (111)
T ss_dssp             HHHHHHHHHHC--CCCCSSSS
T ss_pred             HHHHHHHHHHh--HhhhHhHH
Confidence            88888877775  34444333

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.28  E-value=6.5e-13  Score=131.95  Aligned_cols=127  Identities=17%  Similarity=0.212  Sum_probs=113.3

Q ss_pred             hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHH
Q 014212           27 AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---------------PKGYYRRGAA   91 (429)
Q Consensus        27 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~   91 (429)
                      .+++++|+..|+++++.+|..+.++.++|.++++.|+|++|+..|++|++++|.+               ..+|+++|.+
T Consensus       247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~  326 (457)
T 1kt0_A          247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC  326 (457)
T ss_dssp             EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            4567788888999999999999999999999999999999999999999999998               6899999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCCc
Q 014212           92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGAR  167 (429)
Q Consensus        92 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~  167 (429)
                      |..+|++++|+.+|+++++++|+++.+++.++.++..+++  +++|+..++            ++++++|.+..+.
T Consensus       327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~--~~~A~~~~~------------~al~l~P~~~~a~  388 (457)
T 1kt0_A          327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE--FESAKGDFE------------KVLEVNPQNKAAR  388 (457)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHTTC----CHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccC--HHHHHHHHH------------HHHHhCCCCHHHH
Confidence            9999999999999999999999999999999999999887  778877777            8888888776543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.27  E-value=1.3e-11  Score=119.31  Aligned_cols=133  Identities=17%  Similarity=0.195  Sum_probs=116.1

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ-------NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR   80 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   80 (429)
                      ...+..+.++..+|..+...|++++|+.++++|+++.+.       .+.++.++|.++..+|++++|+..+++++.+.+.
T Consensus       137 ~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  216 (383)
T 3ulq_A          137 KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEA  216 (383)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            445668899999999999999999999999999997443       3568899999999999999999999999988654


Q ss_pred             Ch------HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           81 YP------KGYYRRGAAYLAMGKFKEALKDFQQVKK-----LS-PNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        81 ~~------~~~~~la~~~~~~g~~~eA~~~~~~al~-----~~-p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      ..      .++.++|.+|..+|++++|+.+|+++++     .+ |....++..+|.++..+++  +++|+..++
T Consensus       217 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~  288 (383)
T 3ulq_A          217 EKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGK--IDKAHEYHS  288 (383)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence            33      5899999999999999999999999999     46 7788899999999998887  777877776

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.27  E-value=1.8e-11  Score=118.89  Aligned_cols=122  Identities=19%  Similarity=0.186  Sum_probs=112.6

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhhCHHHHHHHHHHHHHh------CC
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA----VYYANRAFAHTKLEEYGSAIQDASKAIEI------DP   79 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p   79 (429)
                      ++..+..+..+|..++..|++++|+..|+++++..|++.    .++..+|.++...|++++|+..+++++.+      .|
T Consensus        44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  123 (411)
T 4a1s_A           44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL  123 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence            477888999999999999999999999999999999986    58999999999999999999999999998      56


Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHh
Q 014212           80 RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL------SPNDPDAAQKVKECEKAVKK  131 (429)
Q Consensus        80 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~  131 (429)
                      ....++..+|.+|..+|++++|+..|++++++      .|....++..++.++...++
T Consensus       124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK  181 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence            77889999999999999999999999999998      56667789999999988887

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.27  E-value=1.4e-11  Score=114.26  Aligned_cols=132  Identities=23%  Similarity=0.253  Sum_probs=119.1

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID--   78 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--   78 (429)
                      ..+..+.++..+|..+...|++++|+..|+++++.        .|....++..+|.++...|++++|+..+++++.+.  
T Consensus        64 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  143 (311)
T 3nf1_A           64 DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK  143 (311)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            57888999999999999999999999999999987        35567889999999999999999999999999884  


Q ss_pred             ------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           79 ------PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL--------SPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        79 ------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                            |....++..+|.++..+|++++|+..|++++++        .|....++..++.++...++  +++|+..++
T Consensus       144 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~  219 (311)
T 3nf1_A          144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK--FKQAETLYK  219 (311)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred             hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence                  556788999999999999999999999999998        67777889999999999888  677777666

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.26  E-value=1.1e-11  Score=95.11  Aligned_cols=92  Identities=15%  Similarity=0.130  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 014212           17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAV-YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM   95 (429)
Q Consensus        17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~   95 (429)
                      .+.+|..++..|++++|+..|+++++.+|+++. +++++|.++..+|++++|+..|+++++++|+++.++.+        
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------   74 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------   74 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence            357888999999999999999999999999998 99999999999999999999999999999999888754        


Q ss_pred             CCHHHHHHHHHHHHHhCCCCH
Q 014212           96 GKFKEALKDFQQVKKLSPNDP  116 (429)
Q Consensus        96 g~~~eA~~~~~~al~~~p~~~  116 (429)
                      +.+.+|+..|++++..+|+++
T Consensus        75 ~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           75 KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             HHHHHHHHHHCCTTHHHHCCS
T ss_pred             HHHHHHHHHHHHHhccCcccc
Confidence            567788888888888877664

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.26  E-value=2.1e-11  Score=101.31  Aligned_cols=132  Identities=15%  Similarity=0.219  Sum_probs=111.4

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-   81 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-   81 (429)
                      ..+..+.++..+|..++..|++++|+.+++++++..+..      ..++..+|.++..+|++++|+..+++++.+.+.. 
T Consensus         4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~   83 (164)
T 3ro3_A            4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK   83 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            345678899999999999999999999999999876542      2578999999999999999999999999886543 


Q ss_pred             -----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           82 -----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        82 -----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                           ..++..+|.++..+|++++|+..+++++++.+..      ..++..++.++...++  +++|+..++
T Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~  153 (164)
T 3ro3_A           84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN--HDQAMHFAE  153 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC--HHHHHHHHH
Confidence                 5689999999999999999999999999874322      4567788888888887  667766655

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.26  E-value=1e-11  Score=104.76  Aligned_cols=102  Identities=19%  Similarity=0.164  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh------------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014212           48 AVYYANRAFAHTKLEEYGSAIQDASKAIEI------------------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVK  109 (429)
Q Consensus        48 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al  109 (429)
                      +..+..+|..++..|+|++|+..|++++.+                  +|.+..+|+++|.+|..+|++++|+..+++++
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            567899999999999999999999999999                  77778999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212          110 KLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY  163 (429)
Q Consensus       110 ~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~  163 (429)
                      +++|+++.+++.+|.++..+++  +++|+..++            ++++++|..
T Consensus        91 ~~~p~~~~a~~~~g~~~~~~g~--~~~A~~~~~------------~al~l~p~~  130 (162)
T 3rkv_A           91 KREETNEKALFRRAKARIAAWK--LDEAEEDLK------------LLLRNHPAA  130 (162)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCGGG
T ss_pred             hcCCcchHHHHHHHHHHHHHhc--HHHHHHHHH------------HHHhcCCCC
Confidence            9999999999999999999988  778887777            788888764

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.26  E-value=5.5e-11  Score=89.18  Aligned_cols=84  Identities=30%  Similarity=0.497  Sum_probs=79.5

Q ss_pred             CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014212           46 QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC  125 (429)
Q Consensus        46 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~  125 (429)
                      .++.+++.+|.++...|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|+++++++|+++.++..++.+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHH
Q 014212          126 EKAV  129 (429)
Q Consensus       126 ~~~~  129 (429)
                      +...
T Consensus        87 ~~~~   90 (91)
T 1na3_A           87 KQKQ   90 (91)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            7654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.26  E-value=9.3e-12  Score=116.79  Aligned_cols=139  Identities=12%  Similarity=0.070  Sum_probs=104.5

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---
Q 014212           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---   81 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---   81 (429)
                      ...+.++..+|.+|...|++++|+.+|++++++.+.      ...++.++|.+|.. |++++|+.+|++|+.+.|..   
T Consensus        73 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~  151 (307)
T 2ifu_A           73 FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL  151 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh
Confidence            345677888888888888899999999888887432      24677888888888 88999999999988887643   


Q ss_pred             ---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHhHHHHHhhcCCccccccccccc
Q 014212           82 ---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP------DAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSI  152 (429)
Q Consensus        82 ---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~  152 (429)
                         ..++.++|.+|..+|++++|+.+|++++++.|++.      .++..++.++..+++  +++|+..++          
T Consensus       152 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~--~~~A~~~~~----------  219 (307)
T 2ifu_A          152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD--YVAAQKCVR----------  219 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH----------
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC--HHHHHHHHH----------
Confidence               56788889999999999999999999988866542      245555555555555  566666655          


Q ss_pred             cccccccCCCCCC
Q 014212          153 DYQSIEVEPQYSG  165 (429)
Q Consensus       153 ~~~~l~~~~~~~~  165 (429)
                        +++ +.|.+..
T Consensus       220 --~al-~~p~~~~  229 (307)
T 2ifu_A          220 --ESY-SIPGFSG  229 (307)
T ss_dssp             --HHT-TSTTSTT
T ss_pred             --HHh-CCCCCCC
Confidence              777 7777654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.26  E-value=6.8e-11  Score=99.14  Aligned_cols=103  Identities=17%  Similarity=0.222  Sum_probs=93.9

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   88 (429)
                      ..|..+.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++..+|++++|+.++++++.++|.+..++..+
T Consensus        42 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~  121 (166)
T 1a17_A           42 LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKY  121 (166)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            35667889999999999999999999999999999999999999999999999999999999999999999999988555


Q ss_pred             HH--HHHHcCCHHHHHHHHHHHHHh
Q 014212           89 GA--AYLAMGKFKEALKDFQQVKKL  111 (429)
Q Consensus        89 a~--~~~~~g~~~eA~~~~~~al~~  111 (429)
                      +.  .+...|++++|+..+.++..+
T Consensus       122 ~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A          122 QECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcccchHHH
Confidence            54  488899999999999877654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.26  E-value=3.6e-11  Score=119.06  Aligned_cols=109  Identities=18%  Similarity=0.095  Sum_probs=90.0

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-------------------hCHHHHHH
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL-------------------EEYGSAIQ   69 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-------------------g~~~~A~~   69 (429)
                      .+|..+.++..+|..+...|++++|+..|+++++.+|+++.++.++|.+|...                   +.+++|+.
T Consensus       242 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  321 (472)
T 4g1t_A          242 KAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVA  321 (472)
T ss_dssp             HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHH
T ss_pred             hCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHH
Confidence            45677888999999999999999999999999999999999998888887543                   33667788


Q ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014212           70 DASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD  117 (429)
Q Consensus        70 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~  117 (429)
                      .+++++.++|.+..++..+|.++..+|++++|+.+|+++++++|++..
T Consensus       322 ~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~  369 (472)
T 4g1t_A          322 HLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA  369 (472)
T ss_dssp             HHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChH
Confidence            888888888888888888888888888888888888888887776543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.24  E-value=2e-11  Score=98.29  Aligned_cols=106  Identities=23%  Similarity=0.356  Sum_probs=96.6

Q ss_pred             CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014212           44 NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK  123 (429)
Q Consensus        44 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~  123 (429)
                      .|.+..+++.+|.++...|++++|+..|++++..+|.+..+++.+|.++..+|++++|+..++++++.+|+++.++..++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la   91 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA   91 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            46678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212          124 ECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY  163 (429)
Q Consensus       124 ~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~  163 (429)
                      .++...++  +++|+..++            ++++.+|..
T Consensus        92 ~~~~~~~~--~~~A~~~~~------------~~~~~~p~~  117 (133)
T 2lni_A           92 AALEAMKD--YTKAMDVYQ------------KALDLDSSC  117 (133)
T ss_dssp             HHHHHTTC--HHHHHHHHH------------HHHHHCGGG
T ss_pred             HHHHHHhh--HHHHHHHHH------------HHHHhCCCc
Confidence            99988887  777777777            666666543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.23  E-value=1.1e-10  Score=90.10  Aligned_cols=84  Identities=17%  Similarity=0.305  Sum_probs=67.4

Q ss_pred             hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHH
Q 014212           43 LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND--PDAAQ  120 (429)
Q Consensus        43 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~  120 (429)
                      .+|+++.+++.+|.+++.+|++++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..|++++++.|..  ..+..
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~   81 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS   81 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence            4788899999999999999999999999999999999999999999999999999999999999999887643  33344


Q ss_pred             HHHHHH
Q 014212          121 KVKECE  126 (429)
Q Consensus       121 ~l~~~~  126 (429)
                      .+..++
T Consensus        82 ~l~~~l   87 (100)
T 3ma5_A           82 ELQDAK   87 (100)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444333

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.23  E-value=6.8e-11  Score=92.72  Aligned_cols=94  Identities=23%  Similarity=0.272  Sum_probs=88.1

Q ss_pred             CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014212           47 NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE  126 (429)
Q Consensus        47 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~  126 (429)
                      .+..++.+|.++...|++++|+..+++++..+|.++.+++.+|.++..+|++++|+..++++++.+|+++.++..++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHhhcCCc
Q 014212          127 KAVKKLKFEEAIAVPE  142 (429)
Q Consensus       127 ~~~~~~~~~~a~~~~~  142 (429)
                      ...++  +++|...++
T Consensus        83 ~~~~~--~~~A~~~~~   96 (118)
T 1elw_A           83 EFLNR--FEEAKRTYE   96 (118)
T ss_dssp             HHTTC--HHHHHHHHH
T ss_pred             HHHhh--HHHHHHHHH
Confidence            88887  777777666

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.22  E-value=6.2e-10  Score=103.37  Aligned_cols=131  Identities=12%  Similarity=0.100  Sum_probs=112.7

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC--
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA------VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY--   81 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--   81 (429)
                      +|.....+...+..++..|+|++|++.++++++..+...      ..++.+|.++...|++++|+..+++++...+..  
T Consensus        71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~  150 (293)
T 2qfc_A           71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID  150 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred             chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence            456677888999999999999999999999999887754      346678999999999999999999999876543  


Q ss_pred             ----hHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           82 ----PKGYYRRGAAYLAMGKFKEALKDFQQVK---KLSPNDP----DAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        82 ----~~~~~~la~~~~~~g~~~eA~~~~~~al---~~~p~~~----~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                          ..+++++|.+|..+|++++|+.+|++|+   +..|++.    .++.++|.++..+++  +++|+.+++
T Consensus       151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~--y~~Al~~~~  220 (293)
T 2qfc_A          151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR--YEESLYQVN  220 (293)
T ss_dssp             TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh--HHHHHHHHH
Confidence                5689999999999999999999999999   5566654    578899999988887  788888877

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.22  E-value=9.3e-11  Score=109.41  Aligned_cols=122  Identities=11%  Similarity=-0.078  Sum_probs=81.8

Q ss_pred             ccHhHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHh---hCHHHHHHHHHHHHHhCC
Q 014212            9 SSVSRAEELKALANEAFRAK--KYSQAIDLYSQAIELNSQNAVYYANRAFAH----TKL---EEYGSAIQDASKAIEIDP   79 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~----~~~---g~~~~A~~~~~~al~~~p   79 (429)
                      .+|+...+|..++.++...+  ++++|++.+.+++..+|.+..+|..++.++    ...   +++++++..+.++++.+|
T Consensus        62 ~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p  141 (306)
T 3dra_A           62 ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDP  141 (306)
T ss_dssp             HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT
T ss_pred             HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCC
Confidence            35666666666666666666  667777777777777777766776666666    444   566666777777777777


Q ss_pred             CChHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014212           80 RYPKGYYRRGAAYLAMGKFK--EALKDFQQVKKLSPNDPDAAQKVKECEKAVK  130 (429)
Q Consensus        80 ~~~~~~~~la~~~~~~g~~~--eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~  130 (429)
                      .+..+|+..+.+...+|+++  ++++++.++++.+|.|..+|.+.+.+...++
T Consensus       142 kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~  194 (306)
T 3dra_A          142 KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKK  194 (306)
T ss_dssp             TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSG
T ss_pred             CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence            77777777776666666666  6666777777777776666666666654443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.22  E-value=2.6e-10  Score=107.11  Aligned_cols=161  Identities=8%  Similarity=-0.012  Sum_probs=130.3

Q ss_pred             CcccHhHHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC--HHHHHHHHHHH
Q 014212            7 ENSSVSRAEELKALANEAFRAKK----------YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE--YGSAIQDASKA   74 (429)
Q Consensus         7 ~~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~a   74 (429)
                      ...+|+...+|...+.++...+.          +++++..+.+++..+|.+..+|..++.++..+++  +++++.++.++
T Consensus        57 L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~  136 (331)
T 3dss_A           57 LGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARF  136 (331)
T ss_dssp             HTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred             HHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHH
Confidence            35688999999999999988776          7899999999999999999999999999999994  99999999999


Q ss_pred             HHhCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCcccccccccccc
Q 014212           75 IEIDPRYPKGYYRRGAAYLAMGK-FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSID  153 (429)
Q Consensus        75 l~~~p~~~~~~~~la~~~~~~g~-~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~  153 (429)
                      ++++|.|..+|...+.+....|. ++++++++.++++.+|.|..+|.+++.+...+..............+...++....
T Consensus       137 l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~  216 (331)
T 3dss_A          137 LEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELV  216 (331)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHH
Confidence            99999999999999999999999 69999999999999999999999999998777210000000000001223333444


Q ss_pred             ccccccCCCCCCCc
Q 014212          154 YQSIEVEPQYSGAR  167 (429)
Q Consensus       154 ~~~l~~~~~~~~~~  167 (429)
                      .+++..+|....+.
T Consensus       217 ~~ai~~~P~d~SaW  230 (331)
T 3dss_A          217 QNAFFTDPNDQSAW  230 (331)
T ss_dssp             HHHHHHSTTCHHHH
T ss_pred             HHHHHhCCCCHHHH
Confidence            48888888876664

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=6.8e-11  Score=97.11  Aligned_cols=107  Identities=14%  Similarity=0.200  Sum_probs=98.0

Q ss_pred             hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 014212           43 LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA  119 (429)
Q Consensus        43 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~  119 (429)
                      .+|.+...++.+|.+++..|++++|+..|+++++.+|++   ..+++.+|.++..+|++++|+..++++++++|+++.++
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  102 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL  102 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence            467889999999999999999999999999999999987   89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212          120 QKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY  163 (429)
Q Consensus       120 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~  163 (429)
                      ..++.++..+++  +++|+..++            ++++++|..
T Consensus       103 ~~~a~~~~~~~~--~~~A~~~~~------------~al~~~p~~  132 (148)
T 2dba_A          103 YRRSQALEKLGR--LDQAVLDLQ------------RCVSLEPKN  132 (148)
T ss_dssp             HHHHHHHHHHTC--HHHHHHHHH------------HHHHHCSSC
T ss_pred             HHHHHHHHHcCC--HHHHHHHHH------------HHHHcCCCc
Confidence            999999999888  777777776            677776654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.21  E-value=2.3e-11  Score=117.52  Aligned_cols=125  Identities=14%  Similarity=0.182  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-------h
Q 014212           16 ELKALANEAFRAKKYSQAIDLYSQAIEL---NSQ---NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-------P   82 (429)
Q Consensus        16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~   82 (429)
                      .++.+|..++..|++++|+..|++++++   .++   .+.++.++|.++..+|++++|+.++++|+.+.+..       +
T Consensus       105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  184 (383)
T 3ulq_A          105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL  184 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence            3445999999999999999999999987   233   56889999999999999999999999999985443       4


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP------DAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        83 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      .++.++|.+|..+|++++|+.+|++|+++.+...      .++.++|.++..+++  +++|+..++
T Consensus       185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~--~~~A~~~~~  248 (383)
T 3ulq_A          185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ--YEDAIPYFK  248 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence            5899999999999999999999999999866443      478889999988887  777777777

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.20  E-value=1.7e-10  Score=108.40  Aligned_cols=121  Identities=12%  Similarity=0.055  Sum_probs=111.7

Q ss_pred             cccHhHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHhCCCChHH
Q 014212            8 NSSVSRAEELKALANEAFRAK--KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE-YGSAIQDASKAIEIDPRYPKG   84 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~   84 (429)
                      ..+|....+|...+.++...+  +++++++.+.++++.+|.+..+|..++.+....|. ++++++++.++++.+|.|..+
T Consensus       102 ~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SA  181 (331)
T 3dss_A          102 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS  181 (331)
T ss_dssp             HHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHH
T ss_pred             HhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHH
Confidence            458899999999999999999  49999999999999999999999999999999998 699999999999999999999


Q ss_pred             HHHHHHHHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014212           85 YYRRGAAYLAM--------------GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA  128 (429)
Q Consensus        85 ~~~la~~~~~~--------------g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~  128 (429)
                      |+.++.++..+              +.++++++++.+++..+|++..+|+.+..+...
T Consensus       182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~  239 (331)
T 3dss_A          182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGA  239 (331)
T ss_dssp             HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            99999999887              568999999999999999999999876655543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.20  E-value=5.4e-11  Score=95.10  Aligned_cols=108  Identities=24%  Similarity=0.369  Sum_probs=96.9

Q ss_pred             HhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014212           42 ELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK  121 (429)
Q Consensus        42 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~  121 (429)
                      +.+|.++..+..+|.++...|++++|+..+++++..+|+++.+++.+|.++..+|++++|+..++++++..|+++.++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   85 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR   85 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence            34566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212          122 VKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY  163 (429)
Q Consensus       122 l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~  163 (429)
                      ++.++...++  +++|+..++            ++++..|..
T Consensus        86 ~~~~~~~~~~--~~~A~~~~~------------~~~~~~p~~  113 (131)
T 2vyi_A           86 MGLALSSLNK--HVEAVAYYK------------KALELDPDN  113 (131)
T ss_dssp             HHHHHHHTTC--HHHHHHHHH------------HHHHHSTTC
T ss_pred             HHHHHHHhCC--HHHHHHHHH------------HHHhcCccc
Confidence            9999988887  777777776            666666643

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.20  E-value=2.5e-10  Score=104.63  Aligned_cols=124  Identities=22%  Similarity=0.254  Sum_probs=111.2

Q ss_pred             HhHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCCCCh
Q 014212           11 VSRAEELKALANEAFR----AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRYP   82 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~   82 (429)
                      +..+.+++.+|..+..    .+++++|+.+|+++++.+  ++.+++++|.++..    .+++++|+..|+++++.  .++
T Consensus        35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~  110 (273)
T 1ouv_A           35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYA  110 (273)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred             CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCc
Confidence            4566889999999999    999999999999999885  89999999999999    99999999999999998  489


Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HHhHHHHHhhcCCc
Q 014212           83 KGYYRRGAAYLA----MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA----VKKLKFEEAIAVPE  142 (429)
Q Consensus        83 ~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~~~a~~~~~  142 (429)
                      .+++.+|.+|..    .+++++|+.+|+++++..  ++.++..++.++..    .++  +++|+..++
T Consensus       111 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~--~~~A~~~~~  174 (273)
T 1ouv_A          111 EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKD--LKKALASYD  174 (273)
T ss_dssp             HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCC--HHHHHHHHH
T ss_pred             cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCC--HHHHHHHHH
Confidence            999999999999    999999999999999976  68889999988876    555  666666665

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.19  E-value=3.3e-11  Score=100.06  Aligned_cols=93  Identities=18%  Similarity=0.324  Sum_probs=83.4

Q ss_pred             HHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014212           59 TKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKF----------KEALKDFQQVKKLSPNDPDAAQKVKECEKA  128 (429)
Q Consensus        59 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~eA~~~~~~al~~~p~~~~~~~~l~~~~~~  128 (429)
                      .+.+.|++|+..++++++++|+++++|+++|.++..++++          ++|+..|++|++++|++.++++++|.++..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            4677899999999999999999999999999999999875          599999999999999999999999999998


Q ss_pred             HHh---------HHHHHhhcCCccccccccccccccccccCCCC
Q 014212          129 VKK---------LKFEEAIAVPESERHSVADSIDYQSIEVEPQY  163 (429)
Q Consensus       129 ~~~---------~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~  163 (429)
                      ++.         .++++|+.+++            ++++++|++
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~------------kAl~l~P~~  124 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQ------------QAVDEQPDN  124 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHH------------HHHHHCTTC
T ss_pred             hcccCcchhhhhccHHHHHHHHH------------HHHHhCCCC
Confidence            873         24777777666            999999975

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.19  E-value=1.3e-10  Score=108.03  Aligned_cols=129  Identities=12%  Similarity=0.008  Sum_probs=107.8

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHH---HhCCCCh
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAI---EIDPRYP   82 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~   82 (429)
                      .....++.+|..+...|++++|+..|+++++..+..      ..++.++|.+|..+|++++|+.+|++|+   +..|++.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~  192 (293)
T 2qfc_A          113 QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE  192 (293)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc
Confidence            345667789999999999999999999999875543      6689999999999999999999999999   5556543


Q ss_pred             ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHhHHHHHh-hcCCc
Q 014212           83 ----KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN------DPDAAQKVKECEKAVKKLKFEEA-IAVPE  142 (429)
Q Consensus        83 ----~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~~~a-~~~~~  142 (429)
                          .+++++|.+|..+|++++|+.++++++++.++      ...++..+|.++..+++  +++| ..+++
T Consensus       193 ~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~--~~~Ai~~~~~  261 (293)
T 2qfc_A          193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY--EEAEIEDAYK  261 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTC--CHHHHHHHHH
T ss_pred             cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHH
Confidence                68999999999999999999999999998643      26788899999888887  5566 44344

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.19  E-value=1.6e-11  Score=108.74  Aligned_cols=124  Identities=17%  Similarity=0.041  Sum_probs=109.5

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh----CHHHHHHHHHHHHHhCCCChHHHHH
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE----EYGSAIQDASKAIEIDPRYPKGYYR   87 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~   87 (429)
                      .++.+++.+|..+...+++++|+.+|+++++.  .++.+++++|.+|.. +    ++++|+.+|+++.+  +.++.++++
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~   90 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIV   90 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHH
Confidence            56889999999999999999999999999875  689999999999998 7    89999999999965  579999999


Q ss_pred             HHHHHHH----cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----HHhHHHHHhhcCCc
Q 014212           88 RGAAYLA----MGKFKEALKDFQQVKKLSP--NDPDAAQKVKECEKA----VKKLKFEEAIAVPE  142 (429)
Q Consensus        88 la~~~~~----~g~~~eA~~~~~~al~~~p--~~~~~~~~l~~~~~~----~~~~~~~~a~~~~~  142 (429)
                      +|.+|..    .+++++|+.+|+++.+..|  +++.+...++.++..    .++  +++|+.+++
T Consensus        91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d--~~~A~~~~~  153 (212)
T 3rjv_A           91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED--DVKASEYFK  153 (212)
T ss_dssp             HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC--HHHHHHHHH
T ss_pred             HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC--HHHHHHHHH
Confidence            9999998    8999999999999999988  458999999999866    333  556666655

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.19  E-value=4.4e-11  Score=115.39  Aligned_cols=133  Identities=15%  Similarity=0.119  Sum_probs=116.0

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ-------NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR   80 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   80 (429)
                      ...+..+.++..+|.++...|++++|+.++++|+++.+.       .+.++.++|.++..+|++++|+..|++|+.+.+.
T Consensus       135 ~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~  214 (378)
T 3q15_A          135 SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMD  214 (378)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            446778899999999999999999999999999987443       2567889999999999999999999999987432


Q ss_pred             ------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           81 ------YPKGYYRRGAAYLAMGKFKEALKDFQQVKK-----LSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        81 ------~~~~~~~la~~~~~~g~~~eA~~~~~~al~-----~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                            ...++.++|.+|..+|++++|+.+|+++++     .+|....++..+|.++...++  +++|+..++
T Consensus       215 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~  285 (378)
T 3q15_A          215 IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQ--TQKAFQFIE  285 (378)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence                  346889999999999999999999999999     778888899999999998888  777777776

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.19  E-value=6.9e-11  Score=94.98  Aligned_cols=101  Identities=23%  Similarity=0.180  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 014212           49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP---KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQKV  122 (429)
Q Consensus        49 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~l  122 (429)
                      .+++.+|.+++..|++++|+..|++++..+|+++   .+++.+|.++..+|++++|+..|+++++..|++   +.+++.+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            3568899999999999999999999999999998   899999999999999999999999999999999   8899999


Q ss_pred             HHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212          123 KECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY  163 (429)
Q Consensus       123 ~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~  163 (429)
                      +.++..+++  +++|+..++            +++...|..
T Consensus        83 a~~~~~~g~--~~~A~~~~~------------~~~~~~p~~  109 (129)
T 2xev_A           83 GLSQYGEGK--NTEAQQTLQ------------QVATQYPGS  109 (129)
T ss_dssp             HHHHHHTTC--HHHHHHHHH------------HHHHHSTTS
T ss_pred             HHHHHHcCC--HHHHHHHHH------------HHHHHCCCC
Confidence            999998887  777777776            677666653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.18  E-value=8.4e-10  Score=112.14  Aligned_cols=145  Identities=10%  Similarity=0.059  Sum_probs=121.5

Q ss_pred             cHhHHHHHHH---HHHHHHHhcCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC----------HHHHHHHHHHHH
Q 014212           10 SVSRAEELKA---LANEAFRAKKY-SQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE----------YGSAIQDASKAI   75 (429)
Q Consensus        10 ~p~~~~~~~~---~a~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al   75 (429)
                      ....+..+..   ......+.|++ ++|++.+.++++.+|++..+|+.++.++..+++          +++|+..+.+++
T Consensus        21 ~~~k~~~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l  100 (567)
T 1dce_A           21 REQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL  100 (567)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHH
Confidence            4445544443   33344456665 578999999999999999999999999999998          999999999999


Q ss_pred             HhCCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-hHHHHHhhcCCccccccccccc
Q 014212           76 EIDPRYPKGYYRRGAAYLAMG--KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK-KLKFEEAIAVPESERHSVADSI  152 (429)
Q Consensus        76 ~~~p~~~~~~~~la~~~~~~g--~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~~~~~a~~~~~~~~~~~a~~~  152 (429)
                      +.+|++..+|+..+.++..++  ++++|++++.++++++|.+..+|...+.+...++ .  +++++.++.          
T Consensus       101 ~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~--~~~el~~~~----------  168 (567)
T 1dce_A          101 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVA--PAEELAFTD----------  168 (567)
T ss_dssp             HHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCC--HHHHHHHHH----------
T ss_pred             HhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCC--hHHHHHHHH----------
Confidence            999999999999999999999  7799999999999999999999999999988877 4  455555555          


Q ss_pred             cccccccCCCCCCCcc
Q 014212          153 DYQSIEVEPQYSGARI  168 (429)
Q Consensus       153 ~~~~l~~~~~~~~~~~  168 (429)
                        ++++.+|.+..+..
T Consensus       169 --~~I~~~p~n~saW~  182 (567)
T 1dce_A          169 --SLITRNFSNYSSWH  182 (567)
T ss_dssp             --TTTTTTCCCHHHHH
T ss_pred             --HHHHHCCCCccHHH
Confidence              77777777665543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.18  E-value=1.7e-10  Score=91.23  Aligned_cols=98  Identities=29%  Similarity=0.447  Sum_probs=88.3

Q ss_pred             hCCCC-HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014212           43 LNSQN-AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK  121 (429)
Q Consensus        43 ~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~  121 (429)
                      .+|.. ..+++.+|.++...|++++|+..+++++..+|.++.+++.+|.++...|++++|+..++++++..|+++.++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   82 (125)
T 1na0_A            3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN   82 (125)
T ss_dssp             ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence            35655 78899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHHHHHhhcCCc
Q 014212          122 VKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus       122 l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      ++.++...++  +++|+..++
T Consensus        83 la~~~~~~~~--~~~A~~~~~  101 (125)
T 1na0_A           83 LGNAYYKQGD--YDEAIEYYQ  101 (125)
T ss_dssp             HHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHhcC--HHHHHHHHH
Confidence            9999988887  677777666

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.17  E-value=3.6e-11  Score=111.79  Aligned_cols=128  Identities=11%  Similarity=-0.015  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-------CC
Q 014212           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEID-------PR   80 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~   80 (429)
                      ...+..+|..+...+++++|+.+|+++++..+..      ..++.++|.+|..+|++++|+.+|+++++..       +.
T Consensus       115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~  194 (293)
T 3u3w_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF  194 (293)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhH
Confidence            3345568999999999999999999999864432      4478999999999999999999999999532       22


Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           81 YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        81 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      ...+++++|.+|..+|++++|+.++++++++.+..      ..++..+|.++..+++. +++|+..++
T Consensus       195 ~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~-~~~A~~~~~  261 (293)
T 3u3w_A          195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYE-EAEIEDAYK  261 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCC-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCc-HHHHHHHHH
Confidence            34588999999999999999999999999987544      77899999999888841 355555554

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.17  E-value=6.6e-11  Score=102.87  Aligned_cols=129  Identities=11%  Similarity=0.068  Sum_probs=107.7

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh---CCC--
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIE------LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI---DPR--   80 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~--   80 (429)
                      ..+.++..+|..+...|++++|+..++++++      ..|....++.++|.++..+|++++|+..+++++.+   .++  
T Consensus        24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  103 (203)
T 3gw4_A           24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP  103 (203)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence            6788999999999999999999999999998      44556788999999999999999999999999998   443  


Q ss_pred             --ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCH----HHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           81 --YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP--NDP----DAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        81 --~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p--~~~----~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                        ...++.++|.++..+|++++|+..+++++++.+  .++    .++..++.++...++  +++|...++
T Consensus       104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~  171 (203)
T 3gw4_A          104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN--LLEAQQHWL  171 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC--HHHHHHHHH
Confidence              356799999999999999999999999998743  222    235677777777776  566665555

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.16  E-value=2.2e-10  Score=90.91  Aligned_cols=80  Identities=13%  Similarity=0.032  Sum_probs=75.6

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   89 (429)
                      +|..+.++..+|.++...|++++|+..|+++++.+|+++.+++++|.++..+|++++|+..+++++...|+++.......
T Consensus        23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  102 (117)
T 3k9i_A           23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ  102 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999987754333

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.15  E-value=6.8e-11  Score=109.46  Aligned_cols=105  Identities=21%  Similarity=0.241  Sum_probs=97.5

Q ss_pred             CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014212           45 SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE  124 (429)
Q Consensus        45 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~  124 (429)
                      |.++..+..+|.+++..|++++|+..|++++..+|+++.+++++|.+|..+|++++|+..|+++++++|+++.++..+|.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            67788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212          125 CEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY  163 (429)
Q Consensus       125 ~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~  163 (429)
                      ++..+++  +++|+..++            ++++++|+.
T Consensus        81 ~~~~~g~--~~~A~~~~~------------~al~l~p~~  105 (281)
T 2c2l_A           81 CQLEMES--YDEAIANLQ------------RAYSLAKEQ  105 (281)
T ss_dssp             HHHHTTC--HHHHHHHHH------------HHHHHHHHT
T ss_pred             HHHHcCC--HHHHHHHHH------------HHHHhCccc
Confidence            9999887  778877777            677777654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.15  E-value=3.3e-11  Score=120.22  Aligned_cols=109  Identities=17%  Similarity=0.201  Sum_probs=97.7

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   88 (429)
                      .+|..+.++..+|.++..+|++++|++.|+++++++|+++.+++++|.++..+|++++|++.|+++++++|++..++..+
T Consensus        35 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l  114 (477)
T 1wao_1           35 LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKY  114 (477)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHH
T ss_pred             hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHH--HHHcCCHHHHHHHHH-----------HHHHhCCCCHH
Q 014212           89 GAA--YLAMGKFKEALKDFQ-----------QVKKLSPNDPD  117 (429)
Q Consensus        89 a~~--~~~~g~~~eA~~~~~-----------~al~~~p~~~~  117 (429)
                      +.+  +..+|++++|++.++           ++++++|+...
T Consensus       115 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~  156 (477)
T 1wao_1          115 QECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSG  156 (477)
T ss_dssp             HHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCS
T ss_pred             HHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccc
Confidence            998  889999999999999           88888876533

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.15  E-value=1e-10  Score=112.86  Aligned_cols=132  Identities=14%  Similarity=0.205  Sum_probs=116.1

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA------VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-   81 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-   81 (429)
                      ..+..+.++..+|..+...|++++|+..+++++++.|...      .++.++|.++..+|++++|+..+++++.+.|.. 
T Consensus       182 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  261 (406)
T 3sf4_A          182 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK  261 (406)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCc
Confidence            4567778999999999999999999999999998865543      389999999999999999999999999987765 


Q ss_pred             -----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           82 -----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        82 -----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                           ..++..+|.++..+|++++|+..|++++++.+..      ..++..++.++...|+  +++|+..++
T Consensus       262 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~  331 (406)
T 3sf4_A          262 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN--HDQAMHFAE  331 (406)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence                 7789999999999999999999999999986654      5678889999988887  777777766

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.13  E-value=3e-09  Score=100.38  Aligned_cols=152  Identities=9%  Similarity=0.010  Sum_probs=121.8

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-EYGSAIQDASKAIEIDPRYPKGYYRR   88 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l   88 (429)
                      .++-..++-.........+..++|++.+.+++.++|++..+|+.++.++..++ .+++++..+.+++..+|++..+|+.+
T Consensus        50 ~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR  129 (349)
T 3q7a_A           50 SEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHR  129 (349)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            34445555555555555566689999999999999999999999999999999 59999999999999999999999999


Q ss_pred             HHHHHHc-C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCC
Q 014212           89 GAAYLAM-G-KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA  166 (429)
Q Consensus        89 a~~~~~~-g-~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~  166 (429)
                      +.++..+ + +++++++++.++++.+|.+..+|...+.+...++.  ++.    .......++.....+.++.+|.+..+
T Consensus       130 ~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~--~~~----~~~~~~~eELe~~~k~I~~dp~N~SA  203 (349)
T 3q7a_A          130 LLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFST--LGR----ISEAQWGSELDWCNEMLRVDGRNNSA  203 (349)
T ss_dssp             HHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHH--TTC----CCHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc--ccc----cchhhHHHHHHHHHHHHHhCCCCHHH
Confidence            9999998 8 89999999999999999999999999999988876  220    00000112333334778888877665


Q ss_pred             c
Q 014212          167 R  167 (429)
Q Consensus       167 ~  167 (429)
                      .
T Consensus       204 W  204 (349)
T 3q7a_A          204 W  204 (349)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.13  E-value=1.7e-10  Score=88.99  Aligned_cols=86  Identities=20%  Similarity=0.203  Sum_probs=73.0

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC--ChHHHH
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--YPKGYY   86 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~   86 (429)
                      .+|.++.+++.+|.+++..|++++|+..|+++++++|+++.+|+++|.++..+|++++|+..|++++++.|.  +.....
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~   81 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS   81 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence            468889999999999999999999999999999999999999999999999999999999999999998764  334444


Q ss_pred             HHHHHHHH
Q 014212           87 RRGAAYLA   94 (429)
Q Consensus        87 ~la~~~~~   94 (429)
                      .+..++..
T Consensus        82 ~l~~~l~~   89 (100)
T 3ma5_A           82 ELQDAKLK   89 (100)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.12  E-value=4.1e-10  Score=113.73  Aligned_cols=178  Identities=12%  Similarity=0.017  Sum_probs=139.3

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA-VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   87 (429)
                      ..|.....+..+|..+...|++++|...|+++++..|.++ .+|..+|.++.+.|++++|...|++|++..|.....+..
T Consensus       316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~  395 (530)
T 2ooe_A          316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT  395 (530)
T ss_dssp             TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHH
T ss_pred             hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHH
Confidence            3678899999999999999999999999999999999986 699999999999999999999999999999988888877


Q ss_pred             HHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCC
Q 014212           88 RGAA-YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA  166 (429)
Q Consensus        88 la~~-~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~  166 (429)
                      .+.+ +...|++++|...|+++++..|+++.++..++.++...|+  .++|...++            +++...|.... 
T Consensus       396 ~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~--~~~Ar~~~~------------~al~~~~~~~~-  460 (530)
T 2ooe_A          396 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE--DNNTRVLFE------------RVLTSGSLPPE-  460 (530)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTC--HHHHHHHHH------------HHHHSCCSCGG-
T ss_pred             HHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCC--HhhHHHHHH------------HHHhccCCCHH-
Confidence            7765 4569999999999999999999999999999988877666  666666666            66655443211 


Q ss_pred             cccCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhh
Q 014212          167 RIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRA  209 (429)
Q Consensus       167 ~~~~~~l~~~~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~  209 (429)
                            .........+......+  +.+.+..+...+.+.+..
T Consensus       461 ------~~~~lw~~~~~~e~~~G--~~~~~~~~~~r~~~~~p~  495 (530)
T 2ooe_A          461 ------KSGEIWARFLAFESNIG--DLASILKVEKRRFTAFRE  495 (530)
T ss_dssp             ------GCHHHHHHHHHHHHHSS--CHHHHHHHHHHHHHHTHH
T ss_pred             ------HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCch
Confidence                  01112222233222222  345577777777777764

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.12  E-value=6.1e-10  Score=103.86  Aligned_cols=124  Identities=9%  Similarity=0.061  Sum_probs=116.6

Q ss_pred             cccHhHHHHHHHHHHHH----HHh---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHH--HHHHHHHHHHHhC
Q 014212            8 NSSVSRAEELKALANEA----FRA---KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYG--SAIQDASKAIEID   78 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~----~~~---g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~--~A~~~~~~al~~~   78 (429)
                      ..+|+...+|..++.++    ...   ++++++++.+.++++.+|.+..+|..++.++..++.++  ++++.+.++++.+
T Consensus        97 ~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d  176 (306)
T 3dra_A           97 LDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD  176 (306)
T ss_dssp             HHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred             HHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC
Confidence            45788889999999999    666   79999999999999999999999999999999999999  9999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212           79 PRYPKGYYRRGAAYLAMGK------FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (429)
Q Consensus        79 p~~~~~~~~la~~~~~~g~------~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  131 (429)
                      |.|..+|..++.+....++      ++++++++.+++..+|++..+|..++.++...++
T Consensus       177 ~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~  235 (306)
T 3dra_A          177 LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR  235 (306)
T ss_dssp             TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC
Confidence            9999999999999999998      9999999999999999999999999998877664

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.12  E-value=8.7e-11  Score=110.12  Aligned_cols=129  Identities=24%  Similarity=0.192  Sum_probs=108.8

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC----
Q 014212           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR----   80 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----   80 (429)
                      ...+..+...|..|...|++++|+..|.+++++.+..      ..++.++|.+|..+|++++|+.+|++++.+.+.    
T Consensus        33 ~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~  112 (307)
T 2ifu_A           33 DSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTP  112 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence            3344556666889999999999999999999986542      568899999999999999999999999998543    


Q ss_pred             --ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           81 --YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        81 --~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                        ...++.++|.+|.. |++++|+.+|++|+++.|..      ..++..++.++..+++  +++|+..++
T Consensus       113 ~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~  179 (307)
T 2ifu_A          113 DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQK--FDEAAASLQ  179 (307)
T ss_dssp             HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence              24688999999999 99999999999999998754      4678888888888887  778877777

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.11  E-value=1e-10  Score=109.11  Aligned_cols=131  Identities=15%  Similarity=0.202  Sum_probs=113.5

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC--
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY--   81 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--   81 (429)
                      .+..+.++..+|..+...|++++|+..++++++..+..      ..++..+|.++...|++++|+..+++++.+.+..  
T Consensus       179 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  258 (338)
T 3ro2_A          179 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD  258 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc
Confidence            46667789999999999999999999999999875542      3489999999999999999999999999987665  


Q ss_pred             ----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           82 ----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        82 ----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                          ..++..+|.++..+|++++|+..+++++++.+..      ..++..++.++...|+  +++|...++
T Consensus       259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~  327 (338)
T 3ro2_A          259 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN--HDQAMHFAE  327 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC--hHHHHHHHH
Confidence                6789999999999999999999999999986543      4478889999988887  677777666

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.11  E-value=1.4e-10  Score=92.80  Aligned_cols=95  Identities=16%  Similarity=0.237  Sum_probs=87.3

Q ss_pred             CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHH
Q 014212           46 QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND-------PDA  118 (429)
Q Consensus        46 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-------~~~  118 (429)
                      ..+..+..+|.++...|++++|+..+++++..+|.++.+++.+|.++..+|++++|+..+++++...|++       +.+
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            3467889999999999999999999999999999999999999999999999999999999999999887       888


Q ss_pred             HHHHHHHHHHHHhHHHHHhhcCCc
Q 014212          119 AQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus       119 ~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      +..++.++...++  +++|+..++
T Consensus        82 ~~~la~~~~~~~~--~~~A~~~~~  103 (131)
T 1elr_A           82 YARIGNSYFKEEK--YKDAIHFYN  103 (131)
T ss_dssp             HHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHHHHhcc--HHHHHHHHH
Confidence            9999999988887  777777766

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.11  E-value=1.6e-10  Score=111.34  Aligned_cols=130  Identities=20%  Similarity=0.321  Sum_probs=113.5

Q ss_pred             HhHHHHHHHHHHHHHHhcC--------------------HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhhCH
Q 014212           11 VSRAEELKALANEAFRAKK--------------------YSQAIDLYSQAIEL------NSQNAVYYANRAFAHTKLEEY   64 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~--------------------~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~   64 (429)
                      +..+.++..+|..+...|+                    +++|+..|++++++      .|....++.++|.++..+|++
T Consensus       124 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  203 (406)
T 3sf4_A          124 VGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNF  203 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBH
T ss_pred             cchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCH
Confidence            4457799999999999999                    99999999999987      344567899999999999999


Q ss_pred             HHHHHHHHHHHHhCCCChH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHhH
Q 014212           65 GSAIQDASKAIEIDPRYPK------GYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKL  132 (429)
Q Consensus        65 ~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~  132 (429)
                      ++|+..+++++.+.+....      ++..+|.++..+|++++|+..+++++++.|..      ..++..++.++...++ 
T Consensus       204 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-  282 (406)
T 3sf4_A          204 RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD-  282 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCc-
Confidence            9999999999998766544      89999999999999999999999999988766      6678888888888777 


Q ss_pred             HHHHhhcCCc
Q 014212          133 KFEEAIAVPE  142 (429)
Q Consensus       133 ~~~~a~~~~~  142 (429)
                       +++|+..++
T Consensus       283 -~~~A~~~~~  291 (406)
T 3sf4_A          283 -YEKAIDYHL  291 (406)
T ss_dssp             -HHHHHHHHH
T ss_pred             -HHHHHHHHH
Confidence             677777766

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.10  E-value=6.3e-11  Score=114.97  Aligned_cols=131  Identities=14%  Similarity=0.217  Sum_probs=113.5

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC--
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY--   81 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--   81 (429)
                      .+..+.++..+|..+...|++++|+.+|++++++.+..      ..++.++|.++..+|++++|+..+++++.+.+..  
T Consensus       219 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  298 (411)
T 4a1s_A          219 RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGE  298 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC
Confidence            46667899999999999999999999999999987653      3388999999999999999999999999987754  


Q ss_pred             ----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           82 ----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        82 ----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                          ..++..+|.++..+|++++|+.+|++++++.++.      ..++..++.++...|+  +++|+..++
T Consensus       299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~  367 (411)
T 4a1s_A          299 REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGG--HERALKYAE  367 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcc--HHHHHHHHH
Confidence                6789999999999999999999999999986543      4578888888888887  667766666

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.10  E-value=2.7e-10  Score=107.52  Aligned_cols=123  Identities=8%  Similarity=-0.014  Sum_probs=115.9

Q ss_pred             cccHhHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-h-CHHHHHHHHHHHHHhCCCChHH
Q 014212            8 NSSVSRAEELKALANEAFRAK-KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL-E-EYGSAIQDASKAIEIDPRYPKG   84 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g-~~~~A~~~~~~al~~~p~~~~~   84 (429)
                      ..+|+...+|..++.++...+ .++++++.++++++.+|++..+|..++.++..+ + +++++++.+.++++.+|.|..+
T Consensus        82 ~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~A  161 (349)
T 3q7a_A           82 RMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHT  161 (349)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHH
T ss_pred             HhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHH
Confidence            457888999999999999999 599999999999999999999999999999998 7 8999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014212           85 YYRRGAAYLAMGKFK--------EALKDFQQVKKLSPNDPDAAQKVKECEKAVK  130 (429)
Q Consensus        85 ~~~la~~~~~~g~~~--------eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~  130 (429)
                      |...+.+....|+++        ++++++.++++.+|.|..+|...+.+...++
T Consensus       162 W~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~  215 (349)
T 3q7a_A          162 WAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRP  215 (349)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTST
T ss_pred             HHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence            999999999999888        9999999999999999999999998876654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.10  E-value=1.1e-09  Score=101.61  Aligned_cols=183  Identities=11%  Similarity=0.072  Sum_probs=132.0

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC--
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAV------YYANRAFAHTKLEEYGSAIQDASKAIEIDPRY--   81 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--   81 (429)
                      .......+...+..++..|++++|+..++++++..+..+.      .+..+|.++...+++++|+.++++++.+.+..  
T Consensus        71 ~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~  150 (293)
T 3u3w_A           71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID  150 (293)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSC
T ss_pred             cchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccccc
Confidence            3555666777899999999999999999999998877654      33458999999999999999999999975543  


Q ss_pred             ----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccc
Q 014212           82 ----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLS-------PNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVAD  150 (429)
Q Consensus        82 ----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~  150 (429)
                          ..++.++|.+|..+|++++|+.+|+++++..       +....++.++|.++..+++  +++|+.+++        
T Consensus       151 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~--y~~A~~~~~--------  220 (293)
T 3u3w_A          151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR--YEESLYQVN--------  220 (293)
T ss_dssp             TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH--HHHHHHHHH--------
Confidence                3379999999999999999999999999632       2224578899999988887  788888777        


Q ss_pred             cccccccccCCCCCCCcccCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCC
Q 014212          151 SIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPS  212 (429)
Q Consensus       151 ~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~  212 (429)
                          +++++.+.......     .......+...+...+. ..+.+...+.++..++....+
T Consensus       221 ----~al~~~~~~~~~~~-----~~~~~~~lg~~~~~~g~-~~~~A~~~~~~Al~i~~~~~~  272 (293)
T 3u3w_A          221 ----KAIEISCRINSMAL-----IGQLYYQRGECLRKLEY-EEAEIEDAYKKASFFFDILEM  272 (293)
T ss_dssp             ----HHHHHHHHTTBCTT-----HHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTTC
T ss_pred             ----HHHHHHHHcCcHHH-----HHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHhCC
Confidence                66665443321111     11122222223332221 124577888888888876543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.08  E-value=7.8e-10  Score=103.10  Aligned_cols=120  Identities=16%  Similarity=0.211  Sum_probs=106.4

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh------CCCC
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----AVYYANRAFAHTKLEEYGSAIQDASKAIEI------DPRY   81 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~   81 (429)
                      .....+...|..++..|++++|+..|+++++..|.+    ..++..+|.++...|++++|+..+++++.+      .|..
T Consensus         3 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (338)
T 3ro2_A            3 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE   82 (338)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence            356788999999999999999999999999999998    467889999999999999999999999987      4456


Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHh
Q 014212           82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP------DAAQKVKECEKAVKK  131 (429)
Q Consensus        82 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~  131 (429)
                      ..++..+|.++..+|++++|+..+++++++.|...      .++..++.++...++
T Consensus        83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~  138 (338)
T 3ro2_A           83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  138 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence            78899999999999999999999999999876542      377888888877776

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.06  E-value=1.5e-10  Score=105.94  Aligned_cols=125  Identities=14%  Similarity=0.106  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHH
Q 014212           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY--PKGYYRRGAAY   92 (429)
Q Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~   92 (429)
                      .....+|..+...|+|++|.+.|..++...|.+. +.+.+|.++++.+++++|+..|+++....+..  ..+++.+|.++
T Consensus       103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al  181 (282)
T 4f3v_A          103 AITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAA  181 (282)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHH
Confidence            4455567777777777777777777777777666 77777777777777777777777665542111  34677777777


Q ss_pred             HHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           93 LAMGKFKEALKDFQQVKKLS--PN-DPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        93 ~~~g~~~eA~~~~~~al~~~--p~-~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      ..+|++++|+..|++++.-.  |. .+++.+.++.++..+|+  .++|...++
T Consensus       182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr--~deA~~~l~  232 (282)
T 4f3v_A          182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN--ESAAVALLE  232 (282)
T ss_dssp             HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            77777777777777776433  43 45577777777777776  556665555

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.05  E-value=1.4e-09  Score=99.54  Aligned_cols=115  Identities=14%  Similarity=0.051  Sum_probs=99.3

Q ss_pred             CcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--CC-C
Q 014212            7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN--AVYYANRAFAHTKLEEYGSAIQDASKAIEID--PR-Y   81 (429)
Q Consensus         7 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~-~   81 (429)
                      ....|... +.+.+|..+++.++|++|+.+|+++.+..+..  ..+++++|.++..+|++++|+.+|++++.-.  |. .
T Consensus       129 ~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~  207 (282)
T 4f3v_A          129 PVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACA  207 (282)
T ss_dssp             CCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTH
T ss_pred             HhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCcccc
Confidence            34567778 99999999999999999999999887643221  4589999999999999999999999998654  55 6


Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014212           82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK  123 (429)
Q Consensus        82 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~  123 (429)
                      +++++++|.++..+|+.++|...|++++..+|+ +.+...|.
T Consensus       208 ~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~  248 (282)
T 4f3v_A          208 RAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK  248 (282)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence            689999999999999999999999999999999 77765553

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.05  E-value=1.6e-10  Score=109.94  Aligned_cols=103  Identities=17%  Similarity=0.097  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH-H
Q 014212           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY-L   93 (429)
Q Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~   93 (429)
                      .++.++|.++.+.|+|++|+..|+++++++|++..+++++|.++..+|++++|+.+|+++++++|++..++..++.+. .
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~  310 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ  310 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            488999999999999999999999999999999999999999999999999999999999999999999999999884 4


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHH
Q 014212           94 AMGKFKEALKDFQQVKKLSPNDPD  117 (429)
Q Consensus        94 ~~g~~~eA~~~~~~al~~~p~~~~  117 (429)
                      ..+..++|...|.+++...|+++.
T Consensus       311 ~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          311 EKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             ------------------------
T ss_pred             HHHHHHHHHHHHHHhhCCCCCCCC
Confidence            566778899999999999998764

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.04  E-value=9e-10  Score=97.32  Aligned_cols=127  Identities=16%  Similarity=0.038  Sum_probs=108.3

Q ss_pred             hHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCC--CC
Q 014212           12 SRAEELKALANEAFRAK----KYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDP--RY   81 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p--~~   81 (429)
                      ..+.+++.+|..|.. +    ++++|+.+|+++.  ++.++.+++++|.+|..    .+++++|+.+|+++.+..|  .+
T Consensus        48 g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~--~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~  124 (212)
T 3rjv_A           48 GDGDALALLAQLKIR-NPQQADYPQARQLAEKAV--EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAA  124 (212)
T ss_dssp             TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHH
T ss_pred             CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcch
Confidence            457889999999998 7    9999999999996  46789999999999998    8899999999999999887  35


Q ss_pred             hHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH----hHHHHHhhcCCc
Q 014212           82 PKGYYRRGAAYLA----MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK----KLKFEEAIAVPE  142 (429)
Q Consensus        82 ~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~----~~~~~~a~~~~~  142 (429)
                      +.++++||.+|..    .+++++|+.+|+++.++ |.++.+.+.++.++..-.    ..++++|+.+++
T Consensus       125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~  192 (212)
T 3rjv_A          125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLN  192 (212)
T ss_dssp             HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHH
Confidence            9999999999999    88999999999999998 778889999999875421    112455555544

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.03  E-value=1.4e-09  Score=104.66  Aligned_cols=96  Identities=20%  Similarity=0.164  Sum_probs=91.8

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   88 (429)
                      .+|..+.++.++|.++++.|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|++|++++|++..++..+
T Consensus       268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l  347 (370)
T 1ihg_A          268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL  347 (370)
T ss_dssp             GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            57888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHH
Q 014212           89 GAAYLAMGKFKEALKD  104 (429)
Q Consensus        89 a~~~~~~g~~~eA~~~  104 (429)
                      +.++..++++++|...
T Consensus       348 ~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          348 LKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999998887654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.02  E-value=4.2e-10  Score=108.45  Aligned_cols=105  Identities=18%  Similarity=0.159  Sum_probs=95.1

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhCHHHHHHHHHHHHH-----hC
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASKAIE-----ID   78 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~   78 (429)
                      .+..+.++..+|.++...|++++|+++|++++++.+.      ...++.++|.++..+|++++|+.++++++.     .+
T Consensus       178 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~  257 (378)
T 3q15_A          178 SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP  257 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG
T ss_pred             hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC
Confidence            4567889999999999999999999999999986431      356789999999999999999999999999     77


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 014212           79 PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN  114 (429)
Q Consensus        79 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~  114 (429)
                      |..+.+++.+|.++..+|++++|+..+++++++.+.
T Consensus       258 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          258 DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            888899999999999999999999999999998653

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.00  E-value=3.5e-09  Score=80.79  Aligned_cols=70  Identities=21%  Similarity=0.427  Sum_probs=66.8

Q ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014212           52 ANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK-GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK  121 (429)
Q Consensus        52 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~  121 (429)
                      +.+|.++...|++++|+..|+++++.+|+++. +++.+|.++..+|++++|+..|+++++++|+++.++..
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   74 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR   74 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            57899999999999999999999999999999 99999999999999999999999999999999988743

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.99  E-value=1.2e-09  Score=110.18  Aligned_cols=140  Identities=14%  Similarity=0.047  Sum_probs=117.9

Q ss_pred             cHhHHHHHHHHHHHHHH-------hcCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 014212           10 SVSRAEELKALANEAFR-------AKKYS-------QAIDLYSQAIE-LNSQNAVYYANRAFAHTKLEEYGSAIQDASKA   74 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~-------~g~~~-------~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   74 (429)
                      .|..+..|+.+|..+..       .|+++       +|+..|++|++ ..|++..+|..+|.++...|++++|...|+++
T Consensus       268 ~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~a  347 (530)
T 2ooe_A          268 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL  347 (530)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            56778999999999987       79987       99999999997 89999999999999999999999999999999


Q ss_pred             HHhCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHHhHHHHHhhcCCccccccccccc
Q 014212           75 IEIDPRYP-KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK-AVKKLKFEEAIAVPESERHSVADSI  152 (429)
Q Consensus        75 l~~~p~~~-~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~~~a~~~~~~~~~~~a~~~  152 (429)
                      ++++|.++ .+|..+|.++..+|++++|...|++|++..|.....+...+.+.. ..++  .++|...++          
T Consensus       348 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~--~~~A~~~~e----------  415 (530)
T 2ooe_A          348 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD--KSVAFKIFE----------  415 (530)
T ss_dssp             HHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCC--HHHHHHHHH----------
T ss_pred             hCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCC--hhHHHHHHH----------
Confidence            99999986 699999999999999999999999999998887776655444321 2333  455555555          


Q ss_pred             cccccccCCCC
Q 014212          153 DYQSIEVEPQY  163 (429)
Q Consensus       153 ~~~~l~~~~~~  163 (429)
                        ++++..|+.
T Consensus       416 --~al~~~p~~  424 (530)
T 2ooe_A          416 --LGLKKYGDI  424 (530)
T ss_dssp             --HHHHHHTTC
T ss_pred             --HHHHHCCCC
Confidence              777777754

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.98  E-value=6.9e-09  Score=85.11  Aligned_cols=102  Identities=11%  Similarity=0.093  Sum_probs=91.7

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh---CHHHHHHHHHHHHHhC-C-CChHHHHHHHHHHHHcCCHHHHHH
Q 014212           29 KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE---EYGSAIQDASKAIEID-P-RYPKGYYRRGAAYLAMGKFKEALK  103 (429)
Q Consensus        29 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~eA~~  103 (429)
                      ....+.+.|.+.++.+|.+..+.+++|.++.+..   +.++++..++.+++.+ | ++.+++|++|..|+++|+|++|..
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence            3456778889988989999999999999999988   7789999999999998 7 578999999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014212          104 DFQQVKKLSPNDPDAAQKVKECEKAVK  130 (429)
Q Consensus       104 ~~~~al~~~p~~~~~~~~l~~~~~~~~  130 (429)
                      +++++++.+|++..+......+...+.
T Consensus        93 y~~~lL~ieP~n~QA~~Lk~~ie~~~~  119 (152)
T 1pc2_A           93 YVRGLLQTEPQNNQAKELERLIDKAMK  119 (152)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999888877665554

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.97  E-value=2.8e-09  Score=83.95  Aligned_cols=89  Identities=7%  Similarity=-0.018  Sum_probs=76.8

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC--ChHHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--YPKGY   85 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~   85 (429)
                      ..+|..+.+++.+|..+...|++++|+..|+++++.+|++..+++.+|.++..+|++++|+..|++++++.|.  +..+.
T Consensus        13 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   92 (115)
T 2kat_A           13 AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVV   92 (115)
T ss_dssp             TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHH
Confidence            4567788999999999999999999999999999999999999999999999999999999999999999885  34444


Q ss_pred             HHHHHHHHHcC
Q 014212           86 YRRGAAYLAMG   96 (429)
Q Consensus        86 ~~la~~~~~~g   96 (429)
                      ..+...+..++
T Consensus        93 ~~l~~~l~~l~  103 (115)
T 2kat_A           93 KELQVFLRRLA  103 (115)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            55554444433

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.97  E-value=2.4e-09  Score=106.52  Aligned_cols=125  Identities=12%  Similarity=0.111  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CC---CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-----CC--
Q 014212           16 ELKALANEAFRAKKYSQAIDLYSQAIEL-----NS---QNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-----PR--   80 (429)
Q Consensus        16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~--   80 (429)
                      .....+..+..+|+|++|+..|++++++     .|   +.+..+.++|.+|..+|+|++|+..+++++++.     |+  
T Consensus       311 ~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp  390 (490)
T 3n71_A          311 DTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA  390 (490)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence            3445666788899999999999999985     33   346778999999999999999999999999762     44  


Q ss_pred             -ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           81 -YPKGYYRRGAAYLAMGKFKEALKDFQQVKKL-----SPNDPDA---AQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        81 -~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~---~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                       .+..+.+||.+|..+|++++|+..|++|+++     .|++|..   ...++.++..+++  +++|...+.
T Consensus       391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~--~~~ae~~~~  459 (490)
T 3n71_A          391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM--FRQNEFMYH  459 (490)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence             4567999999999999999999999999985     5777764   4566666666665  555555544

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.96  E-value=4.3e-09  Score=86.97  Aligned_cols=104  Identities=20%  Similarity=0.240  Sum_probs=90.8

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC----
Q 014212           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR----   80 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----   80 (429)
                      ...+.++..+|..+...|++++|+.+++++++..+..      ..++.++|.++...|++++|+..+++++.+.+.    
T Consensus        46 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  125 (164)
T 3ro3_A           46 AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR  125 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccch
Confidence            3445789999999999999999999999999876543      668899999999999999999999999987432    


Q ss_pred             --ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 014212           81 --YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN  114 (429)
Q Consensus        81 --~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~  114 (429)
                        ...++..+|.++..+|++++|+..+++++++...
T Consensus       126 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          126 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence              2567899999999999999999999999987654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.93  E-value=3.5e-09  Score=91.76  Aligned_cols=116  Identities=15%  Similarity=0.132  Sum_probs=93.7

Q ss_pred             HHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHcC
Q 014212           24 AFRAKKYSQAIDLYSQAIELNS-QNAVYYANRAFAHTKLEEYGSAIQDASKAIEI------DPRYPKGYYRRGAAYLAMG   96 (429)
Q Consensus        24 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g   96 (429)
                      ++..|++++|.+.++.... +| ..+.++..+|.++...|++++|+..+++++.+      .|....++.++|.++..+|
T Consensus         2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g   80 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG   80 (203)
T ss_dssp             -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence            4678999999996655544 45 67889999999999999999999999999984      4456778999999999999


Q ss_pred             CHHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           97 KFKEALKDFQQVKKL---SPND----PDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        97 ~~~eA~~~~~~al~~---~p~~----~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      ++++|+..+++++++   .+++    ..++..++.++...++  +++|...++
T Consensus        81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~  131 (203)
T 3gw4_A           81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD--LAGARQEYE  131 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCC--HHHHHHHHH
Confidence            999999999999998   4533    4568888888888887  777777766

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.85  E-value=2.5e-08  Score=75.49  Aligned_cols=74  Identities=15%  Similarity=0.122  Sum_probs=62.1

Q ss_pred             CCCCHHHHHHHHHHHHHhhC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014212           44 NSQNAVYYANRAFAHTKLEE---YGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD  117 (429)
Q Consensus        44 ~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~  117 (429)
                      +|+++.++..+|.+++..++   .++|...++++++++|+++.+++.+|.++...|+|++|+..++++++.+|.++.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            57888888888888876655   688888888888888888888888888888888888888888888888888544

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.84  E-value=1.8e-08  Score=96.49  Aligned_cols=128  Identities=13%  Similarity=0.052  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--------
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEID--------   78 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------   78 (429)
                      .+.++..+|..+...|++++|+..+++++++.|..      ..++.++|.++...|++++|+..+++++.+.        
T Consensus        52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~  131 (373)
T 1hz4_A           52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL  131 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC
Confidence            44567778888888888888888888888765432      2346778888888888888888888888764        


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           79 PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND-----PDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        79 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-----~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      |....++.++|.++..+|++++|...+++++...+..     ..++..++.++...|+  +++|...++
T Consensus       132 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~l~  198 (373)
T 1hz4_A          132 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD--LDNARSQLN  198 (373)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            2234567778888888888888888888888877642     3456677777777666  566665555

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.83  E-value=1.2e-08  Score=97.75  Aligned_cols=129  Identities=14%  Similarity=-0.018  Sum_probs=107.3

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh----
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA-----VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP----   82 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----   82 (429)
                      -.+..+..+|..+...|++++|+..++++++..|.+.     .++..+|.++...|++++|+..+++++.+.|...    
T Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   91 (373)
T 1hz4_A           12 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY   91 (373)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH
Confidence            3467788999999999999999999999999887653     2678899999999999999999999999866432    


Q ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           83 --KGYYRRGAAYLAMGKFKEALKDFQQVKKLSP--------NDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        83 --~~~~~la~~~~~~g~~~eA~~~~~~al~~~p--------~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                        .++..+|.++..+|++++|+..+++++++.+        ....++..++.++...|+  +++|...++
T Consensus        92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~  159 (373)
T 1hz4_A           92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR--LDEAEASAR  159 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC--HHHHHHHHH
Confidence              3478899999999999999999999999752        334566778888877776  677766666

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.80  E-value=8.7e-08  Score=74.19  Aligned_cols=81  Identities=15%  Similarity=-0.013  Sum_probs=58.5

Q ss_pred             CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 014212           47 NAVYYANRAFAHTKLEEYGSAIQDASKAIEID-------PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA  119 (429)
Q Consensus        47 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~  119 (429)
                      ++.-++.+|..+++.++|+.|+.+|++|++..       +..+.++..+|.++.++|++++|+..++++++++|+++.+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            34556677777777777777777777777653       23466778888888888888888888888888888888877


Q ss_pred             HHHHHHHH
Q 014212          120 QKVKECEK  127 (429)
Q Consensus       120 ~~l~~~~~  127 (429)
                      .+++....
T Consensus        84 ~n~~~~~~   91 (104)
T 2v5f_A           84 GNLKYFEY   91 (104)
T ss_dssp             HHHHHHHH
T ss_pred             hhHHHHHH
Confidence            77764433

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.80  E-value=2.4e-08  Score=99.68  Aligned_cols=109  Identities=20%  Similarity=0.087  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh---CHHHHHHHHHHHHHhCCCChHHH
Q 014212           14 AEELKALANEAFRA-----KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE---EYGSAIQDASKAIEIDPRYPKGY   85 (429)
Q Consensus        14 ~~~~~~~a~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~   85 (429)
                      +.+++.+|..+...     +++++|+.+|+++++.  .++.+++++|.+|...|   ++++|+.+|+++++.  .++.++
T Consensus       291 ~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~  366 (490)
T 2xm6_A          291 SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQ  366 (490)
T ss_dssp             HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHH
Confidence            34445555555554     5555555555555543  34455555665555533   555666666666554  455566


Q ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014212           86 YRRGAAYLA----MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA  128 (429)
Q Consensus        86 ~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~  128 (429)
                      +++|.+|..    .+++++|+.+|+++.+.  .++.++..++.++..
T Consensus       367 ~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~  411 (490)
T 2xm6_A          367 FNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYY  411 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc
Confidence            666666665    55666666666666554  245555555555543

>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7

Probab=98.79  E-value=8.3e-09  Score=90.80  Aligned_cols=68  Identities=21%  Similarity=0.330  Sum_probs=55.5

Q ss_pred             ceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCC--------CcHHHHHHHHHhhhhCCCeEEEecCCcccc
Q 014212          223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGS--------FSVEVILTLFAFKCMCPSAIYLSRGNHESK  294 (429)
Q Consensus       223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~--------~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~  294 (429)
                      ++.+++|+||++..+.++++..... ..+.++++||++|+|+        .+.+++.+|..++    ..+++++||||..
T Consensus        27 ki~~iSD~H~~~~~l~~~l~~~~~~-~~d~vi~~GDl~~~g~~~~~~~~~~~~~~~~~l~~~~----~~v~~V~GNHD~~  101 (208)
T 1su1_A           27 KLMFASDIHGSLPATERVLELFAQS-GAQWLVILGDVLNHGPRNALPEGYAPAKVVERLNEVA----HKVIAVRGNCDSE  101 (208)
T ss_dssp             EEEEECCCTTBHHHHHHHHHHHHHH-TCSEEEECSCCSCCCTTSCCCTTBCHHHHHHHHHTTG----GGEEECCCTTCCH
T ss_pred             EEEEEEcCCCCHHHHHHHHHHHHhc-CCCEEEECCCccccCcccccccccCHHHHHHHHHhcC----CceEEEECCCchH
Confidence            5899999999999998888765322 2356999999999998        4688999988774    3689999999986


Q ss_pred             c
Q 014212          295 S  295 (429)
Q Consensus       295 ~  295 (429)
                      .
T Consensus       102 ~  102 (208)
T 1su1_A          102 V  102 (208)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.78  E-value=2.7e-08  Score=98.34  Aligned_cols=122  Identities=15%  Similarity=0.106  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----hCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212           15 EELKALANEAFRAK---KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL----EEYGSAIQDASKAIEIDPRYPKGYYR   87 (429)
Q Consensus        15 ~~~~~~a~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~   87 (429)
                      .+++.+|..|...|   ++++|+..|+++.+..|..+..++++|.+|...    +++++|+.+|+++.   |.++.++++
T Consensus       177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~  253 (452)
T 3e4b_A          177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVS  253 (452)
T ss_dssp             THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHH
T ss_pred             HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHH
Confidence            48899999999999   999999999999999999999999999999766    79999999999998   899999999


Q ss_pred             HHHH-H--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh---HHHHHhhcCCc
Q 014212           88 RGAA-Y--LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK---LKFEEAIAVPE  142 (429)
Q Consensus        88 la~~-~--~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~---~~~~~a~~~~~  142 (429)
                      +|.+ +  ...+++++|+.+|+++.+.  .++.+.+.++.++. .|.   .++++|+.+++
T Consensus       254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~  311 (452)
T 3e4b_A          254 LAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFE  311 (452)
T ss_dssp             HHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence            9998 4  5789999999999999975  58999999999886 441   12566666655

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.77  E-value=4.4e-08  Score=95.80  Aligned_cols=101  Identities=12%  Similarity=0.133  Sum_probs=84.0

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-----CCC---ChHH
Q 014212           21 ANEAFRAKKYSQAIDLYSQAIEL-----NSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEI-----DPR---YPKG   84 (429)
Q Consensus        21 a~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~   84 (429)
                      +......|+|++|+..|++++++     .|++   +..+.++|.+|..+|+|++|+.++++++++     -|+   -+..
T Consensus       305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~  384 (433)
T 3qww_A          305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM  384 (433)
T ss_dssp             HHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence            33334568899999999999985     3444   567899999999999999999999999976     234   4567


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHH
Q 014212           85 YYRRGAAYLAMGKFKEALKDFQQVKKL-----SPNDPDAAQK  121 (429)
Q Consensus        85 ~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~  121 (429)
                      +.+||.+|..+|++++|+..|++|+++     .|++|.....
T Consensus       385 l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l  426 (433)
T 3qww_A          385 WLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEI  426 (433)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence            999999999999999999999999986     5888876543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.75  E-value=1e-07  Score=95.09  Aligned_cols=125  Identities=17%  Similarity=0.126  Sum_probs=100.1

Q ss_pred             cHhHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCCCC
Q 014212           10 SVSRAEELKALANEAFR----AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRY   81 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~   81 (429)
                      .+.++.+++.+|..|..    .+++++|+.+|+++++.  .++.+++.+|.+|..    .+++++|+.+|+++.+.  .+
T Consensus        35 ~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~  110 (490)
T 2xm6_A           35 ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GL  110 (490)
T ss_dssp             HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TC
T ss_pred             HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CC
Confidence            34567888889999888    88999999999998875  678888999999988    88999999999998875  57


Q ss_pred             hHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HHhHHHHHhhcCCc
Q 014212           82 PKGYYRRGAAYLA----MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA----VKKLKFEEAIAVPE  142 (429)
Q Consensus        82 ~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~~~a~~~~~  142 (429)
                      +.+++.+|.+|..    .+++++|+..|+++.+.  .++.+...++.++..    .++  +++|+..++
T Consensus       111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d--~~~A~~~~~  175 (490)
T 2xm6_A          111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRD--YVMAREWYS  175 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCC--HHHHHHHHH
Confidence            8888899998888    78899999999988775  578888888888764    223  445554444

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.73  E-value=5.6e-08  Score=95.15  Aligned_cols=108  Identities=15%  Similarity=0.075  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-----CC
Q 014212           14 AEELKALANEAFRAKKYSQAIDLYSQAIEL-----NSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEID-----PR   80 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~   80 (429)
                      +.........+..+|+|++|+..|++++++     .|++   ...+.++|.+|..+|+|++|+..+++++.+.     |+
T Consensus       287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~  366 (429)
T 3qwp_A          287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS  366 (429)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC
Confidence            445556667788999999999999999975     3444   5678999999999999999999999999762     44


Q ss_pred             C---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHH
Q 014212           81 Y---PKGYYRRGAAYLAMGKFKEALKDFQQVKKL-----SPNDPDAAQK  121 (429)
Q Consensus        81 ~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~  121 (429)
                      +   +..+++||.+|..+|++++|+..|++|+++     .|++|.....
T Consensus       367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~  415 (429)
T 3qwp_A          367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL  415 (429)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence            4   457999999999999999999999999986     5888766544

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.73  E-value=1.5e-07  Score=76.97  Aligned_cols=88  Identities=20%  Similarity=0.108  Sum_probs=57.3

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-
Q 014212           20 LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA-   94 (429)
Q Consensus        20 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-   94 (429)
                      +|..|...+..++|+++|+++.+.  .++.+++++|.+|..    .+++++|+.+|++|.+.  .++.++++||.+|.. 
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G  106 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG  106 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence            556666666666666666666654  556666666666666    56666666666666655  556666666666666 


Q ss_pred             ---cCCHHHHHHHHHHHHHh
Q 014212           95 ---MGKFKEALKDFQQVKKL  111 (429)
Q Consensus        95 ---~g~~~eA~~~~~~al~~  111 (429)
                         .+++++|+.+|++|.+.
T Consensus       107 ~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A          107 KGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             SSSCCCHHHHHHHHHHHHHT
T ss_pred             CCCCcCHHHHHHHHHHHHHC
Confidence               66666666666666665

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.72  E-value=1.1e-07  Score=73.50  Aligned_cols=76  Identities=17%  Similarity=0.160  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 014212           14 AEELKALANEAFRAKKYSQAIDLYSQAIELN-------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY   86 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   86 (429)
                      +.-.+.+|..++..++|..|+..|++|++..       +..+.++..+|.+++++|++++|+..++++++++|++..+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            5678899999999999999999999999863       345788999999999999999999999999999999999988


Q ss_pred             HHH
Q 014212           87 RRG   89 (429)
Q Consensus        87 ~la   89 (429)
                      +++
T Consensus        85 n~~   87 (104)
T 2v5f_A           85 NLK   87 (104)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            887

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.69  E-value=9.5e-08  Score=78.11  Aligned_cols=106  Identities=25%  Similarity=0.226  Sum_probs=91.8

Q ss_pred             hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHH
Q 014212           27 AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA----MGKFKEAL  102 (429)
Q Consensus        27 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~  102 (429)
                      .+++++|+.+|+++.+.....+.    +|.+|...+.+++|+.+|+++.+.  .++.+++++|.+|..    .+++++|+
T Consensus         8 ~~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             ccCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            35789999999999998755554    999999999999999999999987  789999999999999    89999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHH----HHhHHHHHhhcCCc
Q 014212          103 KDFQQVKKLSPNDPDAAQKVKECEKA----VKKLKFEEAIAVPE  142 (429)
Q Consensus       103 ~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~~~a~~~~~  142 (429)
                      .+|++|.+.  .++.+...++.++..    .++  +++|+.+++
T Consensus        82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d--~~~A~~~~~  121 (138)
T 1klx_A           82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKN--EKQAVKTFE  121 (138)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC--HHHHHHHHH
T ss_pred             HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcC--HHHHHHHHH
Confidence            999999987  789999999999876    444  566666555

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.67  E-value=6.4e-08  Score=96.17  Aligned_cols=107  Identities=10%  Similarity=0.056  Sum_probs=93.4

Q ss_pred             CCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 014212            6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI   77 (429)
Q Consensus         6 ~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   77 (429)
                      ....+|..+..+.++|.+|..+|+|++|+.++++++++        .|+.+..+.++|.+|..+|++++|+..|++|+++
T Consensus       343 lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i  422 (490)
T 3n71_A          343 FADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAI  422 (490)
T ss_dssp             BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            45679999999999999999999999999999999975        3445677999999999999999999999999976


Q ss_pred             -----CCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 014212           78 -----DPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLS  112 (429)
Q Consensus        78 -----~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~  112 (429)
                           -|++   .+....++.++.+++++++|...|+++.+-.
T Consensus       423 ~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          423 LLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 3555   4567889999999999999999999986543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.67  E-value=6.7e-08  Score=73.13  Aligned_cols=73  Identities=19%  Similarity=0.112  Sum_probs=68.1

Q ss_pred             cHhHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh
Q 014212           10 SVSRAEELKALANEAFRAKK---YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP   82 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~   82 (429)
                      +|+++..+..+|..++..++   .++|...++++++++|+++.++..+|..+++.|+|++|+..|+++++.+|.++
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            57789999999999987766   79999999999999999999999999999999999999999999999999843

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.66  E-value=1.9e-07  Score=88.03  Aligned_cols=136  Identities=11%  Similarity=0.018  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHH-------HHHH-HHH--HHHHhCC
Q 014212           13 RAEELKALANEAFRAKK---YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYG-------SAIQ-DAS--KAIEIDP   79 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-------~A~~-~~~--~al~~~p   79 (429)
                      .+..++..|..++..++   +.+|+.+|++|++++|+++.++-.++.+|.....+.       +++. .++  .++..+|
T Consensus       195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~  274 (372)
T 3ly7_A          195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELN  274 (372)
T ss_dssp             GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCC
Confidence            45667778888887654   578999999999999999999999988886432211       1111 222  1235678


Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCcccccccccccccccccc
Q 014212           80 RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEV  159 (429)
Q Consensus        80 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~  159 (429)
                      .++.++..+|.++...|++++|+..+++|++++|+ ..++..+|.++...|+  +++|++.++            +++.+
T Consensus       275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~--~~eA~e~~~------------~AlrL  339 (372)
T 3ly7_A          275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGM--NREAADAYL------------TAFNL  339 (372)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHH
T ss_pred             cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCC--HHHHHHHHH------------HHHhc
Confidence            89999999999999999999999999999999975 6778889999988888  778887777            78888


Q ss_pred             CCCC
Q 014212          160 EPQY  163 (429)
Q Consensus       160 ~~~~  163 (429)
                      +|..
T Consensus       340 ~P~~  343 (372)
T 3ly7_A          340 RPGA  343 (372)
T ss_dssp             SCSH
T ss_pred             CCCc
Confidence            8764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.63  E-value=1.1e-07  Score=102.65  Aligned_cols=119  Identities=12%  Similarity=0.115  Sum_probs=97.9

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC----------
Q 014212           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR----------   80 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----------   80 (429)
                      .+.+.+|+.+|.++.+.|++++|+..|.+|     +++..|..+|.++.++|++++|+++|..|.+..++          
T Consensus      1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~Lafa 1176 (1630)
T 1xi4_A         1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFA 1176 (1630)
T ss_pred             cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHH
Confidence            456789999999999999999999999886     88999999999999999999999999888765532          


Q ss_pred             -----------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCcc
Q 014212           81 -----------------YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPES  143 (429)
Q Consensus        81 -----------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~  143 (429)
                                       +...+..+|..+...|+|++|..+|.+|        ..+..++.++..+++  +++|++.+.+
T Consensus      1177 YAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge--~q~AIEaarK 1246 (1630)
T 1xi4_A         1177 LAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGE--YQAAVDGARK 1246 (1630)
T ss_pred             HHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCC--HHHHHHHHHH
Confidence                             2345677888888888888888888886        357778888888877  7788777764


Q ss_pred             c
Q 014212          144 E  144 (429)
Q Consensus       144 ~  144 (429)
                      .
T Consensus      1247 A 1247 (1630)
T 1xi4_A         1247 A 1247 (1630)
T ss_pred             h
Confidence            3

>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima}

Probab=98.55  E-value=4.4e-08  Score=83.84  Aligned_cols=84  Identities=25%  Similarity=0.298  Sum_probs=60.8

Q ss_pred             ceEEEccCCC--CHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhc
Q 014212          223 HFTVCGDVHG--QFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIY  300 (429)
Q Consensus       223 ~~~v~GDihG--~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~  300 (429)
                      ++.+++|+||  +...+.++++...  ...+.++++||++|+     +++.+|..+.    ..+++++||||...     
T Consensus        24 ri~~iSD~Hg~~~~~~l~~~l~~~~--~~~D~ii~~GD~~~~-----~~~~~l~~~~----~~v~~V~GNhD~~~-----   87 (178)
T 2kkn_A           24 RFLLISDSHVPVRMASLPDEILNSL--KEYDGVIGLGDYVDL-----DTVILLEKFS----KEFYGVHGNMDYPD-----   87 (178)
T ss_dssp             EEEEECCCCBTTTTCCCCHHHHHGG--GGCSEEEESSCBSCH-----HHHHHHHHHT----SSEEECCCSSSCGG-----
T ss_pred             EEEEEecccCCCCHHHHHHHHHHHh--cCCCEEEECCCCCCH-----HHHHHHHhcC----CCEEEEECCCCcHH-----
Confidence            5899999997  6666777777643  234569999999984     7888887763    35899999999753     


Q ss_pred             cchhhhhcccchHHHHHHHHHhccCccccee---cCeEEEEecCc
Q 014212          301 GFEGEVRSKLSETFVELFAEVFCCLPLAHVL---NQKVFVVHGGL  342 (429)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~---~~~~~~vH~gi  342 (429)
                                          |+..+|....+   +.+++++||..
T Consensus        88 --------------------~~~~lp~~~~~~~~g~~i~l~HG~~  112 (178)
T 2kkn_A           88 --------------------VKEHLPFSKVLLVEGVTIGMCHGWG  112 (178)
T ss_dssp             --------------------GGGTSCSCEEEEETTEEEEECCSCC
T ss_pred             --------------------HHhhCCcceEEEECCEEEEEECCCC
Confidence                                23346654433   35899999864

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.53  E-value=3.1e-07  Score=90.77  Aligned_cols=123  Identities=13%  Similarity=0.074  Sum_probs=99.8

Q ss_pred             cHhHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-H--HHhhCHHHHHHHHHHHHHhCCCCh
Q 014212           10 SVSRAEELKALANEAFRA----KKYSQAIDLYSQAIELNSQNAVYYANRAFA-H--TKLEEYGSAIQDASKAIEIDPRYP   82 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~--~~~g~~~~A~~~~~~al~~~p~~~   82 (429)
                      .+..+..++.+|..|...    +++++|+.+|+++.   |.++.+++++|.+ +  ...+++++|+.+|+++.+.  .++
T Consensus       209 g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~  283 (452)
T 3e4b_A          209 GTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQP  283 (452)
T ss_dssp             TCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCH
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCH
Confidence            344555668889888765    79999999999987   8999999999998 4  4678999999999999865  589


Q ss_pred             HHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh---HHHHHhhcCCc
Q 014212           83 KGYYRRGAAYLAMG-----KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK---LKFEEAIAVPE  142 (429)
Q Consensus        83 ~~~~~la~~~~~~g-----~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~---~~~~~a~~~~~  142 (429)
                      .+++++|.+|. .|     ++++|+.+|+++.   |.++.+.+.++.++.. |.   .++++|+.+++
T Consensus       284 ~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~-G~g~~~d~~~A~~~~~  346 (452)
T 3e4b_A          284 RAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRR-GYLGKVYPQKALDHLL  346 (452)
T ss_dssp             HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHT-TTTSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHC-CCCCCcCHHHHHHHHH
Confidence            99999999998 55     9999999999999   8999999999988755 21   12455555554

>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A

Probab=98.52  E-value=2.3e-07  Score=80.23  Aligned_cols=65  Identities=18%  Similarity=0.273  Sum_probs=50.0

Q ss_pred             CceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccc
Q 014212          222 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSM  296 (429)
Q Consensus       222 ~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~  296 (429)
                      .++.+++|+||+...+.++++..... ..+.++++||++|.     +++..|.++    +..+++++||||....
T Consensus        26 m~i~~iSD~Hg~~~~l~~~l~~~~~~-~~D~ii~~GDl~~~-----~~~~~l~~l----~~~~~~V~GNhD~~~~   90 (190)
T 1s3l_A           26 MKIGIMSDTHDHLPNIRKAIEIFNDE-NVETVIHCGDFVSL-----FVIKEFENL----NANIIATYGNNDGERC   90 (190)
T ss_dssp             CEEEEECCCTTCHHHHHHHHHHHHHS-CCSEEEECSCCCST-----HHHHHGGGC----SSEEEEECCTTCCCHH
T ss_pred             eEEEEEeeCCCCHHHHHHHHHHHhhc-CCCEEEECCCCCCH-----HHHHHHHhc----CCCEEEEeCCCcchHH
Confidence            45899999999999999988876422 24569999999984     566666443    3579999999998654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.48  E-value=1.2e-06  Score=81.03  Aligned_cols=126  Identities=9%  Similarity=-0.019  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC----ChHHHHH
Q 014212           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNS--QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR----YPKGYYR   87 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~   87 (429)
                      ..++..+|.++...|++++|++.+.+.+..+|  .+..++..++.++.++|+.+.|.+.+++..+.+|+    +-.....
T Consensus       100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~  179 (310)
T 3mv2_B          100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILN  179 (310)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHH
Confidence            45567999999999999999999999999887  78999999999999999999999999999999883    2334444


Q ss_pred             H--HHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           88 R--GAAYLAMG--KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        88 l--a~~~~~~g--~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      +  |.+....|  ++.+|...|+++....|+.......+. ++..+|+  +++|....+
T Consensus       180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~--~~eAe~~L~  235 (310)
T 3mv2_B          180 LAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRN--IAEAQGIVE  235 (310)
T ss_dssp             HHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTC--HHHHHHHHH
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCC--HHHHHHHHH
Confidence            5  44466666  999999999999888887333233333 6777776  666655554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.46  E-value=1.2e-06  Score=94.78  Aligned_cols=140  Identities=11%  Similarity=0.078  Sum_probs=104.4

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---------------------------CHHHHHHHHHHHHHhhCH
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ---------------------------NAVYYANRAFAHTKLEEY   64 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---------------------------~~~~~~~lg~~~~~~g~~   64 (429)
                      +++..+...|..+.+.|+|++|+++|.+|.+..++                           +...+..+|..++..|+|
T Consensus      1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~Y 1211 (1630)
T 1xi4_A         1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMY 1211 (1630)
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCH
Confidence            56778899999999999999999999887765433                           234567899999999999


Q ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhc-----
Q 014212           65 GSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIA-----  139 (429)
Q Consensus        65 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~-----  139 (429)
                      ++|..+|.+|        ..|..+|.++..+|++++|++.+++|     .++.+|...+.+....++  |..|..     
T Consensus      1212 eeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~E--f~LA~~cgl~I 1276 (1630)
T 1xi4_A         1212 DAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKE--FRLAQMCGLHI 1276 (1630)
T ss_pred             HHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhH--HHHHHHHHHhh
Confidence            9999999986        58999999999999999999999999     445666655544433222  222221     


Q ss_pred             -------------CCccccccccccccccccccCCCCCCC
Q 014212          140 -------------VPESERHSVADSIDYQSIEVEPQYSGA  166 (429)
Q Consensus       140 -------------~~~~~~~~~a~~~~~~~l~~~~~~~~~  166 (429)
                                   +...+.+.++...+.+++.+++.+.+.
T Consensus      1277 iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gm 1316 (1630)
T 1xi4_A         1277 VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGM 1316 (1630)
T ss_pred             hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHH
Confidence                         223456666666666787777665544

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.46  E-value=1.3e-06  Score=79.16  Aligned_cols=109  Identities=7%  Similarity=-0.013  Sum_probs=93.0

Q ss_pred             CcccHhHHHHHHHHHHHHHH-----hc------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHh-----hCHHHHH
Q 014212            7 ENSSVSRAEELKALANEAFR-----AK------KYSQAIDLYSQAIELNSQ--NAVYYANRAFAHTKL-----EEYGSAI   68 (429)
Q Consensus         7 ~~~~p~~~~~~~~~a~~~~~-----~g------~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~-----g~~~~A~   68 (429)
                      ...+|++++.++=.|.....     .|      ...+|...++++++++|+  +..+|..+|..|.+.     |+.++|.
T Consensus       145 ~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~  224 (301)
T 3u64_A          145 SRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAH  224 (301)
T ss_dssp             TTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHH
T ss_pred             HHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHH
Confidence            34467777777766666543     13      357899999999999999  677999999999995     9999999


Q ss_pred             HHHHHHHHhCCCC-hHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC
Q 014212           69 QDASKAIEIDPRY-PKGYYRRGAAYLA-MGKFKEALKDFQQVKKLSPND  115 (429)
Q Consensus        69 ~~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~eA~~~~~~al~~~p~~  115 (429)
                      ++|++|++++|+. ..+++.+|..+.. +|++++|...+++++...|..
T Consensus       225 ~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          225 TAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            9999999999975 9999999999988 599999999999999988773

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.45  E-value=3.3e-06  Score=66.65  Aligned_cols=106  Identities=10%  Similarity=0.079  Sum_probs=90.0

Q ss_pred             HHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHH---HHHHHHHHHHhC-C-CChHHHHHHHHHHHHcCCHH
Q 014212           25 FRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGS---AIQDASKAIEID-P-RYPKGYYRRGAAYLAMGKFK   99 (429)
Q Consensus        25 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~   99 (429)
                      ........+.+.|.+.+..++.+..+.+++|.++....+...   ++..++..+..+ | ..-+++|.||..++++|+|+
T Consensus        12 ~~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~   91 (126)
T 1nzn_A           12 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE   91 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             CCHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence            344456677888888888889999999999999998876665   999999888876 4 46689999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014212          100 EALKDFQQVKKLSPNDPDAAQKVKECEKAVK  130 (429)
Q Consensus       100 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~  130 (429)
                      +|..+++.+++..|+|..+......+...+.
T Consensus        92 ~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~  122 (126)
T 1nzn_A           92 KALKYVRGLLQTEPQNNQAKELERLIDKAMK  122 (126)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999887777655443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.40  E-value=8.8e-07  Score=81.97  Aligned_cols=118  Identities=11%  Similarity=-0.024  Sum_probs=95.5

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----CHHHHHHH--HHHHHHhh--CHHHHHHHHHHHHHhCCC--
Q 014212           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ----NAVYYANR--AFAHTKLE--EYGSAIQDASKAIEIDPR--   80 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l--g~~~~~~g--~~~~A~~~~~~al~~~p~--   80 (429)
                      +...+++...+.++.+.|+.+.|.+.+++..+.+|+    +......+  |.+.+..|  ++++|...|+++....|+  
T Consensus       133 ~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~  212 (310)
T 3mv2_B          133 EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWK  212 (310)
T ss_dssp             TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH
T ss_pred             cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcc
Confidence            478899999999999999999999999999999983    23344445  44466666  999999999999888776  


Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHHHh
Q 014212           81 YPKGYYRRGAAYLAMGKFKEALKDFQQVKKL----------SPNDPDAAQKVKECEKAVKK  131 (429)
Q Consensus        81 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~----------~p~~~~~~~~l~~~~~~~~~  131 (429)
                      .+..+++   ++..+|++++|...++++++.          +|++++++.++..+...+|+
T Consensus       213 ~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk  270 (310)
T 3mv2_B          213 TQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL  270 (310)
T ss_dssp             HHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh
Confidence            3334444   899999999999999988876          58899999888777666653

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.38  E-value=2.4e-07  Score=89.63  Aligned_cols=108  Identities=20%  Similarity=0.235  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 014212           16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM   95 (429)
Q Consensus        16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~   95 (429)
                      ++..+|..++..|+|++|+.+|.++        ..|..+|.|+.++|+|++|+++++++     .++.+|-....++...
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~  190 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDG  190 (449)
T ss_dssp             -------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHc
Confidence            6667777777777777777777765        35666777777777777777777766     3556666666666666


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           96 GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        96 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      |+++.|..+... +...|   +-...+..++...|+  +++|+.+++
T Consensus       191 ~ef~lA~~~~l~-L~~~a---d~l~~lv~~Yek~G~--~eEai~lLe  231 (449)
T 1b89_A          191 KEFRLAQMCGLH-IVVHA---DELEELINYYQDRGY--FEELITMLE  231 (449)
T ss_dssp             TCHHHHHHTTTT-TTTCH---HHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             CcHHHHHHHHHH-HHhCH---hhHHHHHHHHHHCCC--HHHHHHHHH
Confidence            666666554443 22222   223334444544444  555555555

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.38  E-value=1.5e-06  Score=84.63  Aligned_cols=127  Identities=9%  Similarity=0.049  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 014212           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA-----------------VYYANRAFAHTKLEEYGSAIQDASKAIE   76 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~lg~~~~~~g~~~~A~~~~~~al~   76 (429)
                      +.+....|..+.+.|+|++|++.|.++++..|...                 .++.++|.+|...|++++|++.+.+++.
T Consensus         4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~   83 (434)
T 4b4t_Q            4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE   83 (434)
T ss_dssp             TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34567789999999999999999999999887742                 4688999999999999999999999998


Q ss_pred             hCCCChH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           77 IDPRYPK------GYYRRGAAYLAMGKFKEALKDFQQVKKLSPN------DPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        77 ~~p~~~~------~~~~la~~~~~~g~~~eA~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      ..+....      +...++.++...|++++|+..+++++...+.      ...++..++.++...|+  +.+|...+.
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~l~  159 (434)
T 4b4t_Q           84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQ--YKDSLALIN  159 (434)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred             HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccC--hHHHHHHHH
Confidence            8765443      3556788888999999999999999987432      35678889999988887  778877766

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.32  E-value=1.5e-06  Score=71.13  Aligned_cols=82  Identities=15%  Similarity=0.135  Sum_probs=73.1

Q ss_pred             cHhHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHH
Q 014212           10 SVSRAEELKALANEAFRAK---KYSQAIDLYSQAIELN-S-QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG   84 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~   84 (429)
                      ++.+.++.+++|..+.+.+   +.++++..++.+++.+ | +...+++++|..++++|+|++|.++++++++.+|++..+
T Consensus        28 ~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA  107 (152)
T 1pc2_A           28 GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA  107 (152)
T ss_dssp             TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence            4467899999999999988   7779999999999998 7 568999999999999999999999999999999999988


Q ss_pred             HHHHHHH
Q 014212           85 YYRRGAA   91 (429)
Q Consensus        85 ~~~la~~   91 (429)
                      ......+
T Consensus       108 ~~Lk~~i  114 (152)
T 1pc2_A          108 KELERLI  114 (152)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7655443

>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7

Probab=98.31  E-value=2.9e-07  Score=81.35  Aligned_cols=89  Identities=19%  Similarity=0.296  Sum_probs=60.7

Q ss_pred             CceEEEccCCCCHH------HHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCccccc
Q 014212          222 KHFTVCGDVHGQFY------DLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKS  295 (429)
Q Consensus       222 ~~~~v~GDihG~~~------~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~  295 (429)
                      .++.+++|+|++..      .+.++++    ....+.++++||+++     .+++..|..+.    ..+++++||||...
T Consensus        26 m~i~~iSD~H~~~~~~~l~~~l~~~~~----~~~~D~vi~~GDl~~-----~~~l~~l~~~~----~~v~~V~GNHD~~~   92 (215)
T 2a22_A           26 DLVLLIGDLKIPYGAKELPSNFRELLA----TDKINYVLCTGNVCS-----QEYVEMLKNIT----KNVYIVSGDLDSAI   92 (215)
T ss_dssp             EEEEEECCCCTTTTCSSCCGGGHHHHH----CTTCCEEEECSCCCC-----HHHHHHHHHHC----SCEEECCCTTCCSC
T ss_pred             cEEEEEecCCCCCChHHHHHHHHHHHh----cCCCCEEEECCCCCC-----HHHHHHHHHcC----CCEEEecCCCcCcc
Confidence            35899999999752      3333333    123456999999997     57888877663    36899999999875


Q ss_pred             chhhccchhhhhcccchHHHHHHHHHhccCccccee--c-CeEEEEecCc
Q 014212          296 MNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVL--N-QKVFVVHGGL  342 (429)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~--~-~~~~~vH~gi  342 (429)
                      ...    .               .+|+..+|....+  + .+++++||..
T Consensus        93 ~~~----~---------------~~~~~~lp~~~~~~~~~~~i~l~Hg~~  123 (215)
T 2a22_A           93 FNP----D---------------PESNGVFPEYVVVQIGEFKIGLMHGNQ  123 (215)
T ss_dssp             CBC----C---------------GGGTBCCCSEEEEEETTEEEEEECSTT
T ss_pred             ccc----C---------------hhhHhhCCceEEEecCCeEEEEEcCCc
Confidence            441    0               0256677755433  3 3899999876

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.28  E-value=2e-06  Score=83.58  Aligned_cols=131  Identities=10%  Similarity=0.012  Sum_probs=105.5

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC----
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDP----   79 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----   79 (429)
                      ......++..+|..|...|++++|++.+.++++..+..      ..+...+|.++...|++++|+..+++++...+    
T Consensus        51 ~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  130 (434)
T 4b4t_Q           51 RNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR  130 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC
T ss_pred             hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc
Confidence            34556789999999999999999999999999876553      23456788888889999999999999987643    


Q ss_pred             --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           80 --RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS------PNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        80 --~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                        ....++.++|.+|..+|++++|...+++++...      +...+++..++.++..+++  +.+|...+.
T Consensus       131 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~  199 (434)
T 4b4t_Q          131 VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRN--LAKSKASLT  199 (434)
T ss_dssp             CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCc--HHHHHHHHH
Confidence              235788999999999999999999999998763      3335677788888877777  677766665

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.28  E-value=4.5e-06  Score=80.76  Aligned_cols=121  Identities=16%  Similarity=0.121  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   92 (429)
                      .+..+..+|.++.+.|+|++|++.|+++     .++..|...+.++...|+++.|..+..+ +..+|   +-...+..+|
T Consensus       147 ~a~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~a---d~l~~lv~~Y  217 (449)
T 1b89_A          147 NVSNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHA---DELEELINYY  217 (449)
T ss_dssp             HTTCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCH---HHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCH---hhHHHHHHHH
Confidence            3456789999999999999999999999     5799999999999999999999887775 33444   4455788999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        93 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      .+.|++++|+..+++++.+++.+..++..++.++..-+-.+..+.+..+.
T Consensus       218 ek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~  267 (449)
T 1b89_A          218 QDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW  267 (449)
T ss_dssp             HHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred             HHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999987776666667766665

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.28  E-value=6.9e-06  Score=77.41  Aligned_cols=109  Identities=15%  Similarity=0.093  Sum_probs=86.2

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCH-------HHHHH-HHH--HHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 014212            8 NSSVSRAEELKALANEAFRAKKY-------SQAID-LYS--QAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI   77 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~-------~~A~~-~~~--~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   77 (429)
                      ..+|+.+.++-.++.++.....+       ..++. .++  .++..+|.++.++..+|.++...|++++|+..+++|+.+
T Consensus       227 ~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L  306 (372)
T 3ly7_A          227 QSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL  306 (372)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            45788788888777777532111       11111 122  123567999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014212           78 DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD  117 (429)
Q Consensus        78 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~  117 (429)
                      +| +..+|..+|.++...|++++|++.|.+|+.++|..+.
T Consensus       307 n~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          307 EM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            97 4778899999999999999999999999999998764

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.26  E-value=2.4e-06  Score=77.44  Aligned_cols=107  Identities=10%  Similarity=0.086  Sum_probs=83.2

Q ss_pred             hCCCCHHHHHHHHHHHHH-----------hhCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHc-----CCHHHHHHH
Q 014212           43 LNSQNAVYYANRAFAHTK-----------LEEYGSAIQDASKAIEIDPR--YPKGYYRRGAAYLAM-----GKFKEALKD  104 (429)
Q Consensus        43 ~~p~~~~~~~~lg~~~~~-----------~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----g~~~eA~~~  104 (429)
                      .+|+++.+++..|.+...           ++...+|...+++|++++|+  +..+|..+|.+|...     |+.++|.++
T Consensus       147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~  226 (301)
T 3u64_A          147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA  226 (301)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred             cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence            467778877777766533           22367899999999999999  677999999999995     999999999


Q ss_pred             HHHHHHhCCCC-HHHHHHHHHHHHHH-HhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212          105 FQQVKKLSPND-PDAAQKVKECEKAV-KKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY  163 (429)
Q Consensus       105 ~~~al~~~p~~-~~~~~~l~~~~~~~-~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~  163 (429)
                      |++|++++|+. ..++...+..+... ++  .+++..+++            +++...|..
T Consensus       227 ferAL~LnP~~~id~~v~YA~~l~~~~gd--~~~a~~~L~------------kAL~a~p~~  273 (301)
T 3u64_A          227 FEHLTRYCSAHDPDHHITYADALCIPLNN--RAGFDEALD------------RALAIDPES  273 (301)
T ss_dssp             HHHHHHHCCTTCSHHHHHHHHHTTTTTTC--HHHHHHHHH------------HHHHCCGGG
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHhcCC--HHHHHHHHH------------HHHcCCCCC
Confidence            99999999975 99998888876553 43  344444444            777776654

>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6

Probab=98.25  E-value=1e-06  Score=78.18  Aligned_cols=71  Identities=8%  Similarity=0.059  Sum_probs=52.6

Q ss_pred             ceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCccccc
Q 014212          223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKS  295 (429)
Q Consensus       223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~  295 (429)
                      ++.+++|+|+....+.++++..... ..+.++++||++++|+.+.++..++..|+.. +..+++++||||...
T Consensus         7 ri~~iSD~H~~~~~~~~~~~~~~~~-~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~~-~~pv~~v~GNHD~~~   77 (228)
T 1uf3_A            7 YILATSNPMGDLEALEKFVKLAPDT-GADAIALIGNLMPKAAKSRDYAAFFRILSEA-HLPTAYVPGPQDAPI   77 (228)
T ss_dssp             EEEEEECCTTCHHHHHHHHTHHHHH-TCSEEEEESCSSCTTCCHHHHHHHHHHHGGG-CSCEEEECCTTSCSH
T ss_pred             EEEEEeeccCCHHHHHHHHHHHhhc-CCCEEEECCCCCCCCCCHHHHHHHHHHHHhc-CCcEEEECCCCCchh
Confidence            5899999999999888877654321 2346999999999997666555555555432 345899999999764

>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A 2r17_A

Probab=98.22  E-value=1.6e-06  Score=75.03  Aligned_cols=64  Identities=20%  Similarity=0.244  Sum_probs=44.1

Q ss_pred             ceEEEccCCCCHH--HHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCccccc
Q 014212          223 HFTVCGDVHGQFY--DLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKS  295 (429)
Q Consensus       223 ~~~v~GDihG~~~--~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~  295 (429)
                      ++.+++|+|++..  .+...+...-.....+.++++||+++     .+++..|..+.    ..+++++||||...
T Consensus        12 ~i~~iSD~H~~~~~~~~~~~l~~~~~~~~~d~ii~~GDl~~-----~~~~~~l~~~~----~~~~~v~GNhD~~~   77 (192)
T 1z2w_A           12 LVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCT-----KESYDYLKTLA----GDVHIVRGDFDENL   77 (192)
T ss_dssp             EEEEECCCCBTTTCSSCCHHHHTTCCTTSCSEEEECSCCBS-----HHHHHHHHHHC----SEEEECCCTTCCCT
T ss_pred             EEEEEecCCCCccchhHHHHHHHHhccCCCCEEEEcCCCCC-----HHHHHHHHhcC----CCEEEEcCCcCccc
Confidence            4899999999642  23333333211233467999999997     57888777653    36899999999764

>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae} SCOP: d.159.1.7

Probab=98.13  E-value=1.2e-06  Score=74.62  Aligned_cols=58  Identities=17%  Similarity=0.111  Sum_probs=42.8

Q ss_pred             ceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCccccc
Q 014212          223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKS  295 (429)
Q Consensus       223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~  295 (429)
                      ++.+++|+||+...+.++++....  ..+.++++||+..      +++   ..+.    ..+++++||||...
T Consensus         8 ~i~~isD~H~~~~~~~~~~~~~~~--~~d~i~~~GD~~~------~~l---~~l~----~~~~~v~GNhD~~~   65 (176)
T 3ck2_A            8 TIIVMSDSHGDSLIVEEVRDRYVG--KVDAVFHNGDSEL------RPD---SPLW----EGIRVVKGNMDFYA   65 (176)
T ss_dssp             EEEEECCCTTCHHHHHHHHHHHTT--TSSEEEECSCCCS------CTT---CGGG----TTEEECCCTTCCST
T ss_pred             EEEEEecCCCCHHHHHHHHHHhhc--CCCEEEECCCCch------HHH---Hhhh----CCeEEecCcccchh
Confidence            489999999999999999988753  3457999999721      222   2222    25899999999753

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.08  E-value=1e-05  Score=78.98  Aligned_cols=90  Identities=8%  Similarity=0.018  Sum_probs=74.7

Q ss_pred             CCCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 014212            5 ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE   76 (429)
Q Consensus         5 ~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   76 (429)
                      .....+|..+..+.++|.+|..+|+|++|+.++++++++        .|+.+..++++|.+|..+|++++|+..+++|++
T Consensus       320 ~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          320 RLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             CCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            346789999999999999999999999999999999975        344466799999999999999999999999997


Q ss_pred             h-----CCCCh---HHHHHHHHHHHH
Q 014212           77 I-----DPRYP---KGYYRRGAAYLA   94 (429)
Q Consensus        77 ~-----~p~~~---~~~~~la~~~~~   94 (429)
                      +     -|+++   +.+.+|+.+..+
T Consensus       400 i~~~~lG~~Hp~~~~~~~~l~~~~~e  425 (429)
T 3qwp_A          400 IMRVTHGREHSLIEDLILLLEECDAN  425 (429)
T ss_dssp             HHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCChHHHHHHHHHHHHHHH
Confidence            6     35554   345556666544

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.02  E-value=1.3e-05  Score=78.20  Aligned_cols=80  Identities=16%  Similarity=0.083  Sum_probs=69.4

Q ss_pred             CCCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 014212            5 ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE   76 (429)
Q Consensus         5 ~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   76 (429)
                      .....+|..+..+.++|.+|..+|+|++|+.+|++++++        .|+.+..+.++|.+|..+|++++|+..|++|++
T Consensus       331 ~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          331 VFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             TBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            345678999999999999999999999999999999975        344567799999999999999999999999998


Q ss_pred             h-----CCCChHH
Q 014212           77 I-----DPRYPKG   84 (429)
Q Consensus        77 ~-----~p~~~~~   84 (429)
                      +     -|+++..
T Consensus       411 i~~~~lG~~Hp~~  423 (433)
T 3qww_A          411 IMEVAHGKDHPYI  423 (433)
T ss_dssp             HHHHHTCTTCHHH
T ss_pred             HHHHHcCCCChHH
Confidence            6     3566543

>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6

Probab=98.01  E-value=2.7e-06  Score=77.23  Aligned_cols=73  Identities=5%  Similarity=0.058  Sum_probs=51.5

Q ss_pred             CceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCc--------------------------HHHHHHHHH
Q 014212          222 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFS--------------------------VEVILTLFA  275 (429)
Q Consensus       222 ~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s--------------------------~e~~~~l~~  275 (429)
                      .++.+++|+|+....+.++++..... ..+.+|++||++|+|+.+                          .+...++..
T Consensus         6 mri~~iSDlH~~~~~~~~~l~~~~~~-~~D~vi~~GDl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~   84 (260)
T 2yvt_A            6 RKVLAIKNFKERFDLLPKLKGVIAEK-QPDILVVVGNILKNEALEKEYERAHLARREPNRKVIHENEHYIIETLDKFFRE   84 (260)
T ss_dssp             CEEEEEECCTTCGGGHHHHHHHHHHH-CCSEEEEESCCCCCHHHHHHHHHHHHTTCCCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEeecCCChHHHHHHHHHHHhc-CCCEEEECCCCCCccCcchhhhhhhhhhcccchhhhhHHHHHHHHHHHHHHHH
Confidence            35899999999998888887765322 235699999999999753                          123344444


Q ss_pred             hhhhCCCeEEEecCCcccccc
Q 014212          276 FKCMCPSAIYLSRGNHESKSM  296 (429)
Q Consensus       276 lk~~~p~~~~~lrGNhe~~~~  296 (429)
                      |+. .+..+++++||||....
T Consensus        85 l~~-~~~pv~~v~GNHD~~~~  104 (260)
T 2yvt_A           85 IGE-LGVKTFVVPGKNDAPLK  104 (260)
T ss_dssp             HHT-TCSEEEEECCTTSCCHH
T ss_pred             HHh-cCCcEEEEcCCCCchhh
Confidence            432 24568999999998653

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.01  E-value=3e-05  Score=63.89  Aligned_cols=111  Identities=14%  Similarity=0.106  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC---CC--
Q 014212           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQN---------AVYYANRAFAHTKLEEYGSAIQDASKAIEID---PR--   80 (429)
Q Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~--   80 (429)
                      .+++.....++..+.|+.|+.....++.+..++         ..++..+|.+++..++|..|...|++|+...   +.  
T Consensus        21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~  100 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS  100 (167)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence            467788899999999999999999977654322         3478899999999999999999999997642   11  


Q ss_pred             --------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014212           81 --------------------YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE  126 (429)
Q Consensus        81 --------------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~  126 (429)
                                          ..+..|.+|.||.+++++++|+..++..-. .-..+.....+|.++
T Consensus       101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANLY  165 (167)
T ss_dssp             ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred             CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence                                126889999999999999999998764322 235667777776654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.94  E-value=0.00018  Score=74.30  Aligned_cols=131  Identities=13%  Similarity=0.019  Sum_probs=107.8

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----------CCC-----------CHHHHHHHHHHHHHhhCHHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL-----------NSQ-----------NAVYYANRAFAHTKLEEYGSA   67 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----------~p~-----------~~~~~~~lg~~~~~~g~~~~A   67 (429)
                      .|.....+...+......|++++|...|+++++.           .|.           ...+|...+....+.|+.+.|
T Consensus       374 ~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~A  453 (679)
T 4e6h_A          374 IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAAS  453 (679)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHH
Confidence            4566677888999999999999999999999975           253           345788899988899999999


Q ss_pred             HHHHHHHHHh-CCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           68 IQDASKAIEI-DPRYPKGYYRRGAAYLAMGK-FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        68 ~~~~~~al~~-~p~~~~~~~~la~~~~~~g~-~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      ...|.+|++. .+.....|...|.+....++ .+.|...|+++++..|+++..+...+......++  .+.|..+++
T Consensus       454 R~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~--~~~AR~lfe  528 (679)
T 4e6h_A          454 RKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNE--ESQVKSLFE  528 (679)
T ss_dssp             HHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCC--HHHHHHHHH
Confidence            9999999998 55567788888877777654 8999999999999999999988777776666665  566666666

>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initi midwest center for structural genomics, PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP: d.159.1.8

Probab=97.90  E-value=1.3e-05  Score=69.43  Aligned_cols=69  Identities=19%  Similarity=0.123  Sum_probs=48.5

Q ss_pred             ceEEEccCCCCHHHH-------------HHHHHHcC-CCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEec
Q 014212          223 HFTVCGDVHGQFYDL-------------LNIFELNG-LPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSR  288 (429)
Q Consensus       223 ~~~v~GDihG~~~~l-------------~~~l~~~~-~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lr  288 (429)
                      ++.+++|+|+....+             ..+++... .....+.++++||++++|++..+++.++..+.    ..+++++
T Consensus         3 ~i~~iSD~H~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vi~~GDl~~~~~~~~~~~~~l~~l~----~~~~~v~   78 (195)
T 1xm7_A            3 MMYFISDTHFYHENIINLNPEVRFKGFEIVILTNLLKVLKPEDTLYHLGDFTWHFNDKNEYLRIWKALP----GRKILVM   78 (195)
T ss_dssp             CEEEEBCCCBTCTTHHHHSTTTCCTTHHHHHHHHHHTTCCTTCEEEECSCCBSCSCCTTSHHHHHHHSS----SEEEEEC
T ss_pred             EEEEEeccccCCCccccccCCCCHHHHHHHHHHHHHHhCCCCCEEEECCCCCCCchhHHHHHHHHHHCC----CCEEEEe
Confidence            488999999644322             12222221 11234579999999999988888888887763    4699999


Q ss_pred             CCccccc
Q 014212          289 GNHESKS  295 (429)
Q Consensus       289 GNhe~~~  295 (429)
                      ||||...
T Consensus        79 GNhD~~~   85 (195)
T 1xm7_A           79 GNHDKDK   85 (195)
T ss_dssp             CTTCCCH
T ss_pred             CCCCCch
Confidence            9999864

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.85  E-value=0.0007  Score=54.20  Aligned_cols=86  Identities=9%  Similarity=0.060  Sum_probs=74.4

Q ss_pred             CCCHHHHHHHHHHHHHhhC---HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014212           45 SQNAVYYANRAFAHTKLEE---YGSAIQDASKAIEIDPR-YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ  120 (429)
Q Consensus        45 p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~  120 (429)
                      ..+..+.+++|.++....+   ..+++..++..+...|. .-+.+|.||..++++|+|++|..+.+..++..|+|..+..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            4578889999999988764   55799999999998884 5679999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHH
Q 014212          121 KVKECEKAVK  130 (429)
Q Consensus       121 ~l~~~~~~~~  130 (429)
                      ....+...+.
T Consensus       116 Lk~~Ie~~i~  125 (144)
T 1y8m_A          116 LKSMVEDKIQ  125 (144)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777665543

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.81  E-value=0.00022  Score=56.31  Aligned_cols=86  Identities=10%  Similarity=0.067  Sum_probs=74.6

Q ss_pred             CCHHHHHHHHHHHHHhhC---HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014212           46 QNAVYYANRAFAHTKLEE---YGSAIQDASKAIEIDPR-YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK  121 (429)
Q Consensus        46 ~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~  121 (429)
                      -++.+.+++|.++.+..+   ..+++..++..+...|. .-+.+|.+|..++++|+|++|..+.+.+++..|+|..+...
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L  117 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  117 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence            367888999999988764   55799999999998884 57899999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHh
Q 014212          122 VKECEKAVKK  131 (429)
Q Consensus       122 l~~~~~~~~~  131 (429)
                      ...+...+.+
T Consensus       118 k~~Ie~ki~k  127 (134)
T 3o48_A          118 KSMVEDKIQK  127 (134)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            8777666553

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.78  E-value=0.00039  Score=56.07  Aligned_cols=111  Identities=16%  Similarity=0.025  Sum_probs=95.3

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHhhCHHHHHHHHHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKY------SQAIDLYSQAIELNSQN--------AVYYANRAFAHTKLEEYGSAIQDASK   73 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~------~~A~~~~~~al~~~p~~--------~~~~~~lg~~~~~~g~~~~A~~~~~~   73 (429)
                      -..|.+.+.|+......-+.|+.      ++-++.|++|+..-|..        ...|...|.. ...+|.++|.+.|+.
T Consensus         7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~   85 (161)
T 4h7y_A            7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM   85 (161)
T ss_dssp             ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred             eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence            34678889999999999999999      89999999999877663        4567777754 677999999999999


Q ss_pred             HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 014212           74 AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA  119 (429)
Q Consensus        74 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~  119 (429)
                      ++.+...++..|...|.--.++|+...|...+.+|+.+.|...+.+
T Consensus        86 a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l  131 (161)
T 4h7y_A           86 ARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML  131 (161)
T ss_dssp             HHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence            9999888999999999999999999999999999999999876543

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.77  E-value=5.4e-05  Score=78.11  Aligned_cols=80  Identities=13%  Similarity=-0.004  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHH-HHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014212           32 QAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAI-QDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKK  110 (429)
Q Consensus        32 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~  110 (429)
                      .....|++++...|.++..|+..+..+...|+.++|. +.|++|+...|.+...|+.++......|++++|...|++++.
T Consensus       327 Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~  406 (679)
T 4e6h_A          327 RMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCID  406 (679)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            4445566666666666666666666666666666664 666666666666666666666666666666666666666665


Q ss_pred             h
Q 014212          111 L  111 (429)
Q Consensus       111 ~  111 (429)
                      .
T Consensus       407 ~  407 (679)
T 4e6h_A          407 R  407 (679)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*

Probab=97.50  E-value=8.6e-05  Score=68.08  Aligned_cols=65  Identities=20%  Similarity=0.146  Sum_probs=45.5

Q ss_pred             CCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCc--HHHHHHHHHhhhhCCCeEEEecCCcccccc
Q 014212          221 GKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFS--VEVILTLFAFKCMCPSAIYLSRGNHESKSM  296 (429)
Q Consensus       221 ~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s--~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~  296 (429)
                      +.++.+++|+|+....+       .. +..+.+|+.||++++|...  .+++.+|.++.   ...++++.||||...-
T Consensus        59 ~mri~~iSD~H~~~~~l-------~i-~~~D~vi~aGDl~~~g~~~e~~~~~~~L~~l~---~~~v~~V~GNHD~~~d  125 (296)
T 3rl5_A           59 HTRFVCISDTRSRTDGI-------QM-PYGDILLHTGDFTELGLPSEVKKFNDWLGNLP---YEYKIVIAGNHELTFD  125 (296)
T ss_dssp             EEEEEEEBCCTTCCTTC-------CC-CSCSEEEECSCCSSSCCHHHHHHHHHHHHTSC---CSEEEECCCTTCGGGC
T ss_pred             CeEEEEEeeCCCCcchh-------cc-CCCCEEEECCcccCCCCHHHHHHHHHHHHhCC---CCeEEEEcCCcccccc
Confidence            35799999999987643       22 3456799999999999742  33445554442   1358999999998643

>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A

Probab=97.50  E-value=0.00019  Score=65.21  Aligned_cols=68  Identities=19%  Similarity=0.208  Sum_probs=46.5

Q ss_pred             ceEEEccCCCCH------------HHHHHHHHHcCCC-CCCCCeEEccccccCCCCcH--HHHHHHHHhhhhCCCeEEEe
Q 014212          223 HFTVCGDVHGQF------------YDLLNIFELNGLP-SEENPYLFNGDFVDRGSFSV--EVILTLFAFKCMCPSAIYLS  287 (429)
Q Consensus       223 ~~~v~GDihG~~------------~~l~~~l~~~~~~-~~~~~~~~lGD~vdrG~~s~--e~~~~l~~lk~~~p~~~~~l  287 (429)
                      ++.+++|+|+..            ..+.++++..... +..+.++++||+++.|..+.  ++...+..+    +-.++.+
T Consensus         2 ri~~iSD~H~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l----~~p~~~v   77 (274)
T 3d03_A            2 LLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSL----NYPLYLI   77 (274)
T ss_dssp             EEEEECCCCBCSTTCCBTTTBCHHHHHHHHHHHHHTCSSCCSEEEEESCCBSSCCHHHHHHHHHHHTTC----SSCEEEE
T ss_pred             EEEEEecCCcCCCCcccccccCHHHHHHHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHhc----CCCEEEE
Confidence            478999999984            6677777765322 23456999999999887432  223333222    3358999


Q ss_pred             cCCcccc
Q 014212          288 RGNHESK  294 (429)
Q Consensus       288 rGNhe~~  294 (429)
                      +||||..
T Consensus        78 ~GNHD~~   84 (274)
T 3d03_A           78 PGNHDDK   84 (274)
T ss_dssp             CCTTSCH
T ss_pred             CCCCCCH
Confidence            9999975

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.46  E-value=0.00033  Score=55.17  Aligned_cols=81  Identities=14%  Similarity=0.118  Sum_probs=69.5

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHH
Q 014212           11 VSRAEELKALANEAFRAKKYSQ---AIDLYSQAIELN-S-QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY   85 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~   85 (429)
                      +...++.+++|..+.+..+...   ++..++..++.+ | ..-..++.+|..++++|+|++|..+++.+++.+|+|..+.
T Consensus        32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~  111 (126)
T 1nzn_A           32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK  111 (126)
T ss_dssp             CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence            3567889999999998887766   999999999877 5 4678899999999999999999999999999999999887


Q ss_pred             HHHHHH
Q 014212           86 YRRGAA   91 (429)
Q Consensus        86 ~~la~~   91 (429)
                      -....+
T Consensus       112 ~Lk~~i  117 (126)
T 1nzn_A          112 ELERLI  117 (126)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            655443

>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A

Probab=97.44  E-value=0.00014  Score=68.17  Aligned_cols=74  Identities=18%  Similarity=0.195  Sum_probs=47.5

Q ss_pred             CCceEEEccCCCC------------HHHHHHHHHHcCC-CCCCCCeEEccccccCCCCc-H-HHHHHHHHhhhhCCCeEE
Q 014212          221 GKHFTVCGDVHGQ------------FYDLLNIFELNGL-PSEENPYLFNGDFVDRGSFS-V-EVILTLFAFKCMCPSAIY  285 (429)
Q Consensus       221 ~~~~~v~GDihG~------------~~~l~~~l~~~~~-~~~~~~~~~lGD~vdrG~~s-~-e~~~~l~~lk~~~p~~~~  285 (429)
                      ..++.+++|+|..            ...+.++++.... ....+.+|++||+++.|... . .+...+..+....+-.++
T Consensus        25 ~~ri~~iSD~H~~~~~~~~~~~~~~~~~l~~~l~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~~~~~pv~  104 (330)
T 3ib7_A           25 DYVLLHISDTHLIGGDRRLYGAVDADDRLGELLEQLNQSGLRPDAIVFTGDLADKGEPAAYRKLRGLVEPFAAQLGAELV  104 (330)
T ss_dssp             SEEEEEECCCCBCSSSCCBTTTBCHHHHHHHHHHHHHHHTCCCSEEEECSCCBTTCCHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred             CeEEEEEeCCccCCCCcccccccCHHHHHHHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHhhcCCCEE
Confidence            3468999999962            5667777765532 12345699999999998642 2 223333333222234699


Q ss_pred             EecCCcccc
Q 014212          286 LSRGNHESK  294 (429)
Q Consensus       286 ~lrGNhe~~  294 (429)
                      +++||||..
T Consensus       105 ~v~GNHD~~  113 (330)
T 3ib7_A          105 WVMGNHDDR  113 (330)
T ss_dssp             ECCCTTSCH
T ss_pred             EeCCCCCCH
Confidence            999999964

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.28  E-value=0.0029  Score=62.84  Aligned_cols=128  Identities=9%  Similarity=-0.088  Sum_probs=91.8

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH---------------------------------
Q 014212           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFA---------------------------------   57 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~---------------------------------   57 (429)
                      |..+..|...+..+...|+.++|...|++|+.. |.+...|...+..                                 
T Consensus       210 p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l  288 (493)
T 2uy1_A          210 YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLL  288 (493)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHH
Confidence            455778888888899999999999999999999 9876555444332                                 


Q ss_pred             -------HHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014212           58 -------HTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMG-KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV  129 (429)
Q Consensus        58 -------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~  129 (429)
                             ..+.++.+.|...|.+| ...+.....|...|......+ +.+.|...|+++++..|+.+..+..........
T Consensus       289 w~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~  367 (493)
T 2uy1_A          289 RINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRI  367 (493)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence                   22456778888888888 433335566766676666655 588899999999998888887766665555555


Q ss_pred             HhHHHHHhhcCCc
Q 014212          130 KKLKFEEAIAVPE  142 (429)
Q Consensus       130 ~~~~~~~a~~~~~  142 (429)
                      ++  .+.|..+++
T Consensus       368 ~~--~~~aR~l~e  378 (493)
T 2uy1_A          368 GD--EENARALFK  378 (493)
T ss_dssp             TC--HHHHHHHHH
T ss_pred             CC--HHHHHHHHH
Confidence            54  455555555

>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12

Probab=97.26  E-value=0.00015  Score=67.38  Aligned_cols=71  Identities=21%  Similarity=0.086  Sum_probs=46.7

Q ss_pred             ceEEEccCCCCH-------------------HHHHHHHHHcCCCCCCCCeEEccccccCCCC----cHHHHHHHHHhhhh
Q 014212          223 HFTVCGDVHGQF-------------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSF----SVEVILTLFAFKCM  279 (429)
Q Consensus       223 ~~~v~GDihG~~-------------------~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~----s~e~~~~l~~lk~~  279 (429)
                      ++.+++|+|...                   ..+.++++..... ..+.+|++||+++.|..    +.+.+..+..+...
T Consensus         7 ~i~~isD~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~d~vi~~GD~~~~~~~~~~~~~~~~~~~~~~l~~   85 (322)
T 2nxf_A            7 TFGLIADVQYADIEDGENYLRTRRRYYRGSADLLRDAVLQWRRE-RVQCVVQLGDIIDGHNRRRDASDRALDTVMAELDA   85 (322)
T ss_dssp             EEEEECCCCBCSSCCEECTTSSSEECTTHHHHHHHHHHHHHHHT-TCSEEEECSCCBCTHHHHTTCHHHHHHHHHHHHHT
T ss_pred             EEEEEeeccccccCcccccccchHHHHHHHHHHHHHHHHHHHhc-CCCEEEECCCccCCCCCcchHHHHHHHHHHHHHHh
Confidence            488999999765                   4566666554322 33569999999998852    23443333333223


Q ss_pred             CCCeEEEecCCcccc
Q 014212          280 CPSAIYLSRGNHESK  294 (429)
Q Consensus       280 ~p~~~~~lrGNhe~~  294 (429)
                      .+..+++++||||..
T Consensus        86 ~~~p~~~v~GNHD~~  100 (322)
T 2nxf_A           86 CSVDVHHVWGNHEFY  100 (322)
T ss_dssp             TCSEEEECCCHHHHH
T ss_pred             cCCcEEEecCCCCcc
Confidence            456799999999984

>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*

Probab=97.23  E-value=0.00053  Score=65.94  Aligned_cols=73  Identities=16%  Similarity=0.142  Sum_probs=48.5

Q ss_pred             CCceEEEccCCCCH-------------HHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHH----HHHHHHhhhhCCCe
Q 014212          221 GKHFTVCGDVHGQF-------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEV----ILTLFAFKCMCPSA  283 (429)
Q Consensus       221 ~~~~~v~GDihG~~-------------~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~----~~~l~~lk~~~p~~  283 (429)
                      ..++.+++|+|+..             ..+.++++..... ..+.+|+.||++|++.-+.+.    ...+..|+. .+-.
T Consensus        20 ~mrilhiSD~Hlg~~~~~~~~r~~~~~~~l~~~v~~~~~~-~~D~VliaGDl~d~~~p~~~~~~~~~~~l~~L~~-~~~p   97 (386)
T 3av0_A           20 HMMFVHIADNHLGYRQYNLDDREKDIYDSFKLCIKKILEI-KPDVVLHSGDLFNDLRPPVKALRIAMQAFKKLHE-NNIK   97 (386)
T ss_dssp             CCEEEEECCCCBTCCGGGCHHHHHHHHHHHHHHHHHHHTT-CCSEEEECSCSBSSSSCCHHHHHHHHHHHHHHHH-TTCE
T ss_pred             CeEEEEEccCCCCccccCcchhhHHHHHHHHHHHHHHHHc-CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHh-cCCc
Confidence            34689999999762             3456666654322 235689999999999544433    444444432 2357


Q ss_pred             EEEecCCccccc
Q 014212          284 IYLSRGNHESKS  295 (429)
Q Consensus       284 ~~~lrGNhe~~~  295 (429)
                      |+++.||||...
T Consensus        98 v~~v~GNHD~~~  109 (386)
T 3av0_A           98 VYIVAGNHEMPR  109 (386)
T ss_dssp             EEECCCGGGSCS
T ss_pred             EEEEcCCCCCCc
Confidence            999999999764

>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A

Probab=97.19  E-value=0.00024  Score=66.90  Aligned_cols=72  Identities=24%  Similarity=0.216  Sum_probs=43.7

Q ss_pred             CCceEEEccCC-C----C-----------HHHHHHHHHHcCCCCCCCCeEEccc-cccCCCCcHHH----HHHHHHhhhh
Q 014212          221 GKHFTVCGDVH-G----Q-----------FYDLLNIFELNGLPSEENPYLFNGD-FVDRGSFSVEV----ILTLFAFKCM  279 (429)
Q Consensus       221 ~~~~~v~GDih-G----~-----------~~~l~~~l~~~~~~~~~~~~~~lGD-~vdrG~~s~e~----~~~l~~lk~~  279 (429)
                      ..++..++|+| |    .           ...+.++++..... ..+.+++.|| ++|++..+.+.    ..++..|+..
T Consensus        18 ~mrilh~SD~HlG~~~~~~~~~~~r~~~~~~~l~~lv~~~~~~-~~D~vliaGD~l~d~~~~~~~~~~~~~~~l~~L~~~   96 (336)
T 2q8u_A           18 ELKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKR-EVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRT   96 (336)
T ss_dssp             EEEEEEEECCCBTCEECTTTCCEECHHHHHHHHHHHHHHHHHH-TCSEEEEESCSBSCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECcccCCCCccccccCcChhHHHHHHHHHHHHHHHHh-CCCEEEECCccccCCCCCCHHHHHHHHHHHHHHHhc
Confidence            34689999999 7    3           33455555543222 2346899999 99999887764    4455555432


Q ss_pred             CCCeEEEecCCccccc
Q 014212          280 CPSAIYLSRGNHESKS  295 (429)
Q Consensus       280 ~p~~~~~lrGNhe~~~  295 (429)
                        -.++++.||||...
T Consensus        97 --~pv~~i~GNHD~~~  110 (336)
T 2q8u_A           97 --APVVVLPGNHDWKG  110 (336)
T ss_dssp             --SCEEECCC------
T ss_pred             --CCEEEECCCCCccc
Confidence              35899999999765

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.12  E-value=0.0032  Score=49.73  Aligned_cols=81  Identities=9%  Similarity=0.001  Sum_probs=68.9

Q ss_pred             hHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212           12 SRAEELKALANEAFRAKKY---SQAIDLYSQAIELNSQ-NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   87 (429)
                      -.+++.++.|..+.+..+.   .+++..++..++.+|. .-..++.+|..++++|+|++|..+.+.+++..|+|..+...
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L  117 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  117 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence            3568889999999987754   5799999999998885 57889999999999999999999999999999999888665


Q ss_pred             HHHHH
Q 014212           88 RGAAY   92 (429)
Q Consensus        88 la~~~   92 (429)
                      ...+-
T Consensus       118 k~~Ie  122 (134)
T 3o48_A          118 KSMVE  122 (134)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.10  E-value=0.0066  Score=48.54  Aligned_cols=81  Identities=9%  Similarity=0.012  Sum_probs=69.1

Q ss_pred             HhHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 014212           11 VSRAEELKALANEAFRAKKY---SQAIDLYSQAIELNSQ-NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY   86 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   86 (429)
                      ...+++.++.|..+.+..+.   .+++..++..++..|. .-..++.+|..++++|+|++|..+.+..++.+|+|..+.-
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            45678889999999988755   4799999999998885 5678889999999999999999999999999999988765


Q ss_pred             HHHHH
Q 014212           87 RRGAA   91 (429)
Q Consensus        87 ~la~~   91 (429)
                      ....+
T Consensus       116 Lk~~I  120 (144)
T 1y8m_A          116 LKSMV  120 (144)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A

Probab=97.08  E-value=0.00063  Score=64.00  Aligned_cols=70  Identities=20%  Similarity=0.244  Sum_probs=44.6

Q ss_pred             ceEEEccCCCCH-------------HHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHH----HHHHhhhhCCCeEE
Q 014212          223 HFTVCGDVHGQF-------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVIL----TLFAFKCMCPSAIY  285 (429)
Q Consensus       223 ~~~v~GDihG~~-------------~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~----~l~~lk~~~p~~~~  285 (429)
                      ++..++|+|...             ..+.++++..... ..+.+++.||++|++..+.+.+.    .+..|+. .+-.|+
T Consensus         2 kilh~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~D~vl~~GDl~d~~~~~~~~~~~~~~~l~~l~~-~~~~v~   79 (333)
T 1ii7_A            2 KFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQE-NVDFILIAGDLFHSSRPSPGTLKKAIALLQIPKE-HSIPVF   79 (333)
T ss_dssp             EEEEECCCCBTCCGGGCHHHHHHHHHHHHHHHHHHHHT-TCSEEEEESCSBSSSSCCHHHHHHHHHHHHHHHT-TTCCEE
T ss_pred             EEEEEcccCCCCcccCCchhhHHHHHHHHHHHHHHHhc-CCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHH-CCCcEE
Confidence            478899999864             3344455543222 23469999999998855544443    3333332 234699


Q ss_pred             EecCCcccc
Q 014212          286 LSRGNHESK  294 (429)
Q Consensus       286 ~lrGNhe~~  294 (429)
                      ++.||||..
T Consensus        80 ~v~GNHD~~   88 (333)
T 1ii7_A           80 AIEGNHDRT   88 (333)
T ss_dssp             EECCTTTCC
T ss_pred             EeCCcCCCc
Confidence            999999975

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.75  E-value=0.0036  Score=51.53  Aligned_cols=92  Identities=11%  Similarity=0.144  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC-
Q 014212           49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP---------KGYYRRGAAYLAMGKFKEALKDFQQVKKLS---PND-  115 (429)
Q Consensus        49 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~la~~~~~~g~~~eA~~~~~~al~~~---p~~-  115 (429)
                      +++..-...++..+.|+.|+-....++.+..+++         ++++.+|.+++..++|..|...|++|+.+.   +.+ 
T Consensus        21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~  100 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS  100 (167)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3455556778889999999999999877653333         378899999999999999999999998753   111 


Q ss_pred             ---------------------HHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212          116 ---------------------PDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus       116 ---------------------~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                                           .+..+.++.|+..+++  +++|+...+
T Consensus       101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~--~~~Ai~~Le  146 (167)
T 3ffl_A          101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQ--DKDAIAILD  146 (167)
T ss_dssp             ----------------CCCCHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             CccccccccCCCcccccccchHHHHHHHHHHHHHHCC--HHHHHHHHh
Confidence                                 2688999999999998  788887766

>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes}

Probab=96.75  E-value=0.0015  Score=63.98  Aligned_cols=72  Identities=17%  Similarity=0.178  Sum_probs=46.1

Q ss_pred             CceEEEccCCCC--------------------------HHHHHHHHHHcCCCCCCCCeEEccccccCCCCc--HHHHHHH
Q 014212          222 KHFTVCGDVHGQ--------------------------FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFS--VEVILTL  273 (429)
Q Consensus       222 ~~~~v~GDihG~--------------------------~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s--~e~~~~l  273 (429)
                      .++.+++|+|..                          ...+..+++..... ..+.+|++||+++.|...  .++...+
T Consensus        40 ~~i~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~d~vi~~GDl~~~~~~~~~~~~~~~l  118 (443)
T 2xmo_A           40 LSMVVTTDVHYFAPSLTDNGKAFEKYVAAGDGKQLAYSDEITDAFLADVESK-KTDVLIISGDLTNNGEKTSHEELAKKL  118 (443)
T ss_dssp             EEEEEECCCCBCCGGGBCCCHHHHHHHHTSTTCCGGGHHHHHHHHHHHHHHH-TCSEEEEESCCBSSCCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCCccccccchhhhcccccccccccccHHHHHHHHHHHHHHc-CCCEEEECCCCCCCCCHHHHHHHHHHH
Confidence            458999999973                          33455555543211 224699999999988743  3334444


Q ss_pred             HHhhhhCCCeEEEecCCccccc
Q 014212          274 FAFKCMCPSAIYLSRGNHESKS  295 (429)
Q Consensus       274 ~~lk~~~p~~~~~lrGNhe~~~  295 (429)
                      ..+.. .+-.++.++||||...
T Consensus       119 ~~l~~-~~~~~~~v~GNHD~~~  139 (443)
T 2xmo_A          119 TQVEK-NGTQVFVVPGNHDINN  139 (443)
T ss_dssp             HHHHH-TTCEEEEECCTTTSSC
T ss_pred             HHHHh-CCCeEEEECCcCCCCC
Confidence            44431 2456899999999753

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.54  E-value=0.042  Score=52.53  Aligned_cols=98  Identities=18%  Similarity=0.096  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--------C--------------HHHHHHHHHHHHHhhCHHHHHHH
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ--------N--------------AVYYANRAFAHTKLEEYGSAIQD   70 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--------~--------------~~~~~~lg~~~~~~g~~~~A~~~   70 (429)
                      ..+.+...|......|+.+.|.+.+.+|+.+-..        .              ..+...++.++...|++.+|+..
T Consensus       114 ~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~  193 (388)
T 2ff4_A          114 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE  193 (388)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            3445556666677789999999999999986311        1              12334567778889999999999


Q ss_pred             HHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014212           71 ASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKK  110 (429)
Q Consensus        71 ~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~  110 (429)
                      +.+++..+|-+-.+|..+-.++...|+..+|+..|+++-+
T Consensus       194 l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          194 LEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988755

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=96.47  E-value=0.052  Score=44.53  Aligned_cols=100  Identities=14%  Similarity=0.051  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh----C------------
Q 014212           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI----D------------   78 (429)
Q Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~------------   78 (429)
                      +.-..++..++-.|+|..|+..+.+     -+...+.+.-+.||..+++|..|+.++++.++-    +            
T Consensus        34 eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffv  108 (242)
T 3kae_A           34 EYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFV  108 (242)
T ss_dssp             CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSC
T ss_pred             HHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeee
Confidence            4455678888999999998877653     366788888899999999999999999999832    2            


Q ss_pred             -CCChHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 014212           79 -PRYPKG-YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA  119 (429)
Q Consensus        79 -p~~~~~-~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~  119 (429)
                       |.+-+. +..+|.++.+.|.-+||+.+|.......|=.+.+.
T Consensus       109 d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vE  151 (242)
T 3kae_A          109 DPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVE  151 (242)
T ss_dssp             CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHH
Confidence             334444 45579999999999999999999999998766544

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.40  E-value=0.05  Score=53.82  Aligned_cols=114  Identities=11%  Similarity=-0.025  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-EYGSAIQDASKAIEIDPRYPKGYYRRGAA   91 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~   91 (429)
                      ....|...+....+.++.+.|...|.+| +..+.....|...|..-+..+ +.+.|...|+++++..|+.+..|...+..
T Consensus       285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~  363 (493)
T 2uy1_A          285 LDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLF  363 (493)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            3466778888888889999999999999 443346677877787777777 69999999999999999999988888888


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212           92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (429)
Q Consensus        92 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  131 (429)
                      ....|+.+.|...|+++    +.....+..........|+
T Consensus       364 e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~  399 (493)
T 2uy1_A          364 LLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGS  399 (493)
T ss_dssp             HHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSC
T ss_pred             HHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCC
Confidence            89999999999999998    3456666666665555555

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.35  E-value=0.017  Score=46.54  Aligned_cols=98  Identities=14%  Similarity=0.049  Sum_probs=71.0

Q ss_pred             HhCCCCHHHHHHHHHHHHHhhCH------HHHHHHHHHHHHhCCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014212           42 ELNSQNAVYYANRAFAHTKLEEY------GSAIQDASKAIEIDPR--------YPKGYYRRGAAYLAMGKFKEALKDFQQ  107 (429)
Q Consensus        42 ~~~p~~~~~~~~lg~~~~~~g~~------~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~eA~~~~~~  107 (429)
                      -+.|++++.|........+.|+.      ++-++.|++|+..-|.        ....|.+.|.. ...++.++|.+.|+.
T Consensus         7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~   85 (161)
T 4h7y_A            7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM   85 (161)
T ss_dssp             ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred             eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence            35899999999999999988998      8889999999987764        23456667755 567999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212          108 VKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus       108 al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      |+++....+.+|...+......++  ..+|.....
T Consensus        86 a~~~hKkFAKiwi~~AqFEiRqgn--l~kARkILg  118 (161)
T 4h7y_A           86 ARANCKKFAFVHISFAQFELSQGN--VKKSKQLLQ  118 (161)
T ss_dssp             HHHHCTTBHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHccc--HHHHHHHHH
Confidence            999977775555555544444333  444444444

>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C

Probab=96.29  E-value=0.002  Score=61.62  Aligned_cols=70  Identities=21%  Similarity=0.210  Sum_probs=44.5

Q ss_pred             ceEEEccCCCCHH----------------HHHHHHHHcCCCCCCCCeEEccccc-cCCCCcHHHHHH----HHHhhhhCC
Q 014212          223 HFTVCGDVHGQFY----------------DLLNIFELNGLPSEENPYLFNGDFV-DRGSFSVEVILT----LFAFKCMCP  281 (429)
Q Consensus       223 ~~~v~GDihG~~~----------------~l~~~l~~~~~~~~~~~~~~lGD~v-drG~~s~e~~~~----l~~lk~~~p  281 (429)
                      ++..++|+|....                .+.++++..... ..+.+++.||++ |++..+.+.+..    +..|+..  
T Consensus         2 rilh~SD~Hlg~~~~~~~~g~~~~~~~~~~l~~l~~~~~~~-~~D~vliaGDl~hd~~~~~~~~~~~~~~~l~~l~~~--   78 (379)
T 3tho_B            2 KILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKR-EVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRT--   78 (379)
T ss_dssp             EEEEECCCCBTCEECSSSSCEECHHHHHHHHHHHHHHHHHH-TCSEEEECSCCBSCSSSCCHHHHHHHHHHHHHHHHH--
T ss_pred             eEEEEcccCCCCCccccccCcChhHHHHHHHHHHHHHHHhc-CCCEEEECCCccccCCCCCHHHHHHHHHHHHHHHhC--
Confidence            4778889996443                344444433211 234689999999 988777654443    3334333  


Q ss_pred             CeEEEecCCccccc
Q 014212          282 SAIYLSRGNHESKS  295 (429)
Q Consensus       282 ~~~~~lrGNhe~~~  295 (429)
                      -.|+++.||||...
T Consensus        79 ~~v~~i~GNHD~~~   92 (379)
T 3tho_B           79 APVVVLPGNQDWKG   92 (379)
T ss_dssp             SCEEECCCTTSCTT
T ss_pred             CCEEEEcCCCcccc
Confidence            46999999999543

>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A*

Probab=96.21  E-value=0.0065  Score=59.06  Aligned_cols=53  Identities=17%  Similarity=0.254  Sum_probs=36.9

Q ss_pred             CceEEEccCCCC------------HHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHH
Q 014212          222 KHFTVCGDVHGQ------------FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFA  275 (429)
Q Consensus       222 ~~~~v~GDihG~------------~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~  275 (429)
                      .++..+.|+|-.            ...+.++++.+... ..+.+++.||++|++.-+.+++..++.
T Consensus        77 mrilhiSDlHLG~~~~~~~~~~d~~~~l~~lv~~~~~~-~~D~VliaGDLfd~~~ps~~a~~~~~~  141 (472)
T 4fbk_A           77 IRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARER-DVDMILLGGDIFHDNKPSRKALYQALR  141 (472)
T ss_dssp             EEEEEECCCCBTTTTTCTTTTTHHHHHHHHHHHHHHHT-TCSEEEECSCSBSSSSCCHHHHHHHHH
T ss_pred             eEEEEEecccCCCcccCcccchhHHHHHHHHHHHHHhc-CCCEEEEcCccccCCCCCHHHHHHHHH
Confidence            358889999964            23455666554322 235699999999999999887765543

>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}

Probab=96.21  E-value=0.0049  Score=59.54  Aligned_cols=73  Identities=22%  Similarity=0.284  Sum_probs=50.2

Q ss_pred             CceEEEccCCCCH------------HHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhh----------
Q 014212          222 KHFTVCGDVHGQF------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCM----------  279 (429)
Q Consensus       222 ~~~~v~GDihG~~------------~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~----------  279 (429)
                      .++..++|+|-..            ..+.++++..... ..+.+++.||+.|++..+.+++..++.....          
T Consensus        33 mrilhiSDlHLg~~~~~~~~~~d~~~~l~~ll~~~~~~-~~D~VliaGDlfd~~~~~~~~~~~~~~~L~r~~~~~~~~~~  111 (431)
T 3t1i_A           33 FKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQEN-EVDFILLGGDLFHENKPSRKTLHTCLELLRKYCMGDRPVQF  111 (431)
T ss_dssp             EEEEEECCCCBTTTSSCTTTTTHHHHHHHHHHHHHHHT-TCSEEEECSCCBSSSSCCHHHHHHHHHHHHHHHBCSSCCCC
T ss_pred             EEEEEEeccCCCCcccccchhhhHHHHHHHHHHHHhhc-CCCEEEEcCccccCCCCCHHHHHHHHHHHHHHhccCCcccc
Confidence            4588999999532            2445555544322 2356999999999999888877766554321          


Q ss_pred             --------------------------CCCeEEEecCCccccc
Q 014212          280 --------------------------CPSAIYLSRGNHESKS  295 (429)
Q Consensus       280 --------------------------~p~~~~~lrGNhe~~~  295 (429)
                                                ..-.|+++.||||...
T Consensus       112 ~~lsd~~~~~~~~~~~~~ny~d~n~~~~ipV~~I~GNHD~~~  153 (431)
T 3t1i_A          112 EILSDQSVNFGFSKFPWVNYQDGNLNISIPVFSIHGNHDDPT  153 (431)
T ss_dssp             EECSCC------------------CCBCSCEEECCCSSSCCB
T ss_pred             eeccchhhccccccccccccccccccCCCcEEEEccCCCCcc
Confidence                                      1356999999999763

>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*

Probab=96.17  E-value=0.0062  Score=58.54  Aligned_cols=54  Identities=17%  Similarity=0.242  Sum_probs=37.8

Q ss_pred             CCceEEEccCCCC------------HHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHH
Q 014212          221 GKHFTVCGDVHGQ------------FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFA  275 (429)
Q Consensus       221 ~~~~~v~GDihG~------------~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~  275 (429)
                      ..++..+.|+|-.            ...+.++++..... ..+.+++.||++|++.-+.+++..++.
T Consensus        13 ~mrilhiSDlHLg~~~~~~~~~~d~~~~l~~lv~~~~~~-~~D~VliaGDLfd~~~p~~~~~~~~~~   78 (417)
T 4fbw_A           13 TIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARER-DVDMILLGGDIFHDNKPSRKALYQALR   78 (417)
T ss_dssp             CEEEEEECCCCBTTTTTCTTTTTHHHHHHHHHHHHHHHT-TCSEEEECSCCBSSSSCCHHHHHHHHH
T ss_pred             CeEEEEEEcCCCCCcccccccchhHHHHHHHHHHHHHhc-CCCEEEEcCccccCCCCCHHHHHHHHH
Confidence            3468999999965            23455666554322 335699999999999999887766544

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.11  E-value=0.074  Score=47.41  Aligned_cols=62  Identities=18%  Similarity=0.217  Sum_probs=57.7

Q ss_pred             HHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChH
Q 014212           22 NEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK   83 (429)
Q Consensus        22 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~   83 (429)
                      ..+++.|+.++|++.....++.+|.|+.....+-..+.-.|+++.|.+.++.+.+++|+...
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~   66 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP   66 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence            45778899999999999999999999999999999999999999999999999999997643

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.07  E-value=0.12  Score=51.25  Aligned_cols=100  Identities=12%  Similarity=0.085  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC-CChHHHHHHHH
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELN-SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP-RYPKGYYRRGA   90 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~   90 (429)
                      +...+..+-..|.+.|++++|.+.+++..+.. ..+...|..+-..|.+.|+.++|.+.|++..+..- -+...|..+-.
T Consensus       104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~  183 (501)
T 4g26_A          104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLK  183 (501)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence            45567788889999999999999999987753 33577888888999999999999999999887642 26678888999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhC
Q 014212           91 AYLAMGKFKEALKDFQQVKKLS  112 (429)
Q Consensus        91 ~~~~~g~~~eA~~~~~~al~~~  112 (429)
                      ++.+.|+.++|.+.+++.-+..
T Consensus       184 ~~~~~g~~d~A~~ll~~Mr~~g  205 (501)
T 4g26_A          184 VSMDTKNADKVYKTLQRLRDLV  205 (501)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHhhCCCHHHHHHHHHHHHHhC
Confidence            9999999999999999987653

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.98  E-value=0.042  Score=54.12  Aligned_cols=78  Identities=9%  Similarity=0.009  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014212           50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK  127 (429)
Q Consensus        50 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~  127 (429)
                      .+..+|.+..-...+..|..+|.+|..+.|++..+|+.||.+....|+.-+|+-+|.+++....-.+.+..++.....
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~  231 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence            345677777777788999999999999999999999999999999999999999999999988788999988877643

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=95.83  E-value=0.37  Score=47.60  Aligned_cols=124  Identities=12%  Similarity=0.020  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh---------hCHHHHHHHHHHHHHhCC-CChHH
Q 014212           16 ELKALANEAFRAKKYSQAIDLYSQAIELN-SQNAVYYANRAFAHTKL---------EEYGSAIQDASKAIEIDP-RYPKG   84 (429)
Q Consensus        16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~p-~~~~~   84 (429)
                      .+...-..+.+.|+.++|++.|++..+.. +-+...|..+-.++...         ++.++|.+.|++.....- -+...
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t  107 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT  107 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence            35555677889999999999999988753 22455666665555443         347889999988876532 26778


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           85 YYRRGAAYLAMGKFKEALKDFQQVKKLS--PNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        85 ~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      |..+-.+|.+.|+.++|...|++..+..  |+ ...+..+-..+...|+  .++|..+++
T Consensus       108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~tyn~lI~~~~~~g~--~~~A~~l~~  164 (501)
T 4g26_A          108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR-LRSYGPALFGFCRKGD--ADKAYEVDA  164 (501)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-cceehHHHHHHHHCCC--HHHHHHHHH
Confidence            8889999999999999999999888753  43 4455566566666665  677777665

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.68  E-value=0.033  Score=57.61  Aligned_cols=57  Identities=25%  Similarity=0.237  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHH
Q 014212           16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDAS   72 (429)
Q Consensus        16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   72 (429)
                      .+...+..+..+|+|+-|++..++|+...|.....|..|+.||..+|+|+.|+-.++
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLN  395 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAIN  395 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHh
Confidence            444455555566666666666666666666666666666666666666666654443

>2qfp_A Purple acid phosphatase; binuclear, Fe-Zn, hydrolase; HET: NAG NDG; 2.20A {Phaseolus vulgaris} SCOP: b.1.12.1 d.159.1.1 PDB: 2qfr_A* 1kbp_A* 3kbp_A* 4kbp_A*

Probab=95.44  E-value=0.021  Score=55.35  Aligned_cols=70  Identities=19%  Similarity=0.137  Sum_probs=41.8

Q ss_pred             CceEEEccCCCCHHHHHHHHHHc-CCCCCCCCeEEccccccCCCCc-------HHHHHHHHHhhhhCCCeEEEecCCccc
Q 014212          222 KHFTVCGDVHGQFYDLLNIFELN-GLPSEENPYLFNGDFVDRGSFS-------VEVILTLFAFKCMCPSAIYLSRGNHES  293 (429)
Q Consensus       222 ~~~~v~GDihG~~~~l~~~l~~~-~~~~~~~~~~~lGD~vdrG~~s-------~e~~~~l~~lk~~~p~~~~~lrGNhe~  293 (429)
                      .++.++||+|....... .++.. ..+...+.++++||+++.+...       .+...++-.+..  .--++.+.||||.
T Consensus       120 ~~f~~igD~~~~~~~~~-~l~~~~~~~~~~D~vl~~GDl~y~~~~~~~~~~~~~~~~~~l~~~~~--~~P~~~v~GNHD~  196 (424)
T 2qfp_A          120 YTFGLIGDLGQSFDSNT-TLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVA--YQPWIWTAGNHEI  196 (424)
T ss_dssp             EEEEEECSCTTBHHHHH-HHHHHHTCSSCCCEEEECSCCSCGGGSGGGCTHHHHHHHHHHHHHHT--TSCEEECCCHHHH
T ss_pred             eEEEEEEeCCCCCChHH-HHHHHHhCCCCCCEEEEcCccccccccccccchHHHHHHHHHHHHHh--cCCeEeecCCccc
Confidence            46889999998765432 33332 2222345699999999764211       122233333332  2347889999997


Q ss_pred             c
Q 014212          294 K  294 (429)
Q Consensus       294 ~  294 (429)
                      .
T Consensus       197 ~  197 (424)
T 2qfp_A          197 E  197 (424)
T ss_dssp             C
T ss_pred             c
Confidence            5

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.36  E-value=0.082  Score=52.09  Aligned_cols=81  Identities=20%  Similarity=0.133  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 014212           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA   94 (429)
Q Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   94 (429)
                      ..+..+|........+..|..+|.+|..+.|++...++.+|.+....|+.-+|+-+|.+++.....++.+.-++...+..
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            35667899999999999999999999999999999999999999999999999999999999888899999999888765


Q ss_pred             c
Q 014212           95 M   95 (429)
Q Consensus        95 ~   95 (429)
                      .
T Consensus       233 ~  233 (497)
T 1ya0_A          233 A  233 (497)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.10  E-value=0.14  Score=53.08  Aligned_cols=108  Identities=15%  Similarity=0.203  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHH--HHh-hCHHHHHHHHHHHHHh--------CCCC----------hHHHHHH
Q 014212           30 YSQAIDLYSQAIELNSQNAVYYANRAFAH--TKL-EEYGSAIQDASKAIEI--------DPRY----------PKGYYRR   88 (429)
Q Consensus        30 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~--~~~-g~~~~A~~~~~~al~~--------~p~~----------~~~~~~l   88 (429)
                      ++.|+..+++..+.+|.....+. .+.+.  ... .+=-+|++...++++.        .+.+          ...+...
T Consensus       265 ~~~a~~~le~L~~~~p~~~~~~~-~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Q  343 (754)
T 4gns_B          265 VDFTIDYLKGLTKKDPIHDIYYK-TAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQ  343 (754)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHH-HHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCchhHHHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHH
Confidence            57788888888888887654332 22221  112 2233566666666531        2222          2234445


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcC
Q 014212           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAV  140 (429)
Q Consensus        89 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  140 (429)
                      +.-+...|+++-|++.-++|+...|+....|+.|+.+|..+++  |+.|+..
T Consensus       344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d--~e~ALLt  393 (754)
T 4gns_B          344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEE--YEKALFA  393 (754)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC--HHHHHHH
T ss_pred             HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhcc--HHHHHHH
Confidence            6667778888888888888888888888888888888888888  6777653

>1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A {Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1

Probab=94.82  E-value=0.035  Score=53.82  Aligned_cols=71  Identities=15%  Similarity=0.074  Sum_probs=40.3

Q ss_pred             CceEEEccCCCCHHHHHHHHHHc-CCCCCCCCeEEccccccCCCC-----c-H-HHHHHHHHhhhhCCCeEEEecCCccc
Q 014212          222 KHFTVCGDVHGQFYDLLNIFELN-GLPSEENPYLFNGDFVDRGSF-----S-V-EVILTLFAFKCMCPSAIYLSRGNHES  293 (429)
Q Consensus       222 ~~~~v~GDihG~~~~l~~~l~~~-~~~~~~~~~~~lGD~vdrG~~-----s-~-e~~~~l~~lk~~~p~~~~~lrGNhe~  293 (429)
                      .++.++||+|...... ..++.. ..+...+-++++||++..+..     . . +....+-.+..  .--++.+.||||.
T Consensus       127 ~~f~~~gD~~~~~~~~-~~l~~i~~~~~~~D~vl~~GD~~y~~~~~~~~~~~~~~~~~~l~~l~~--~~P~~~v~GNHD~  203 (426)
T 1xzw_A          127 YVFGLIGDIGQTHDSN-TTLTHYEQNSAKGQAVLFMGDLSYSNRWPNHDNNRWDTWGRFSERSVA--YQPWIWTAGNHEI  203 (426)
T ss_dssp             EEEEEECSCTTBHHHH-HHHHHHHHCTTCCSEEEECSCCCCGGGSGGGCTHHHHHHHHHHHHHHT--TSCEECCCCGGGC
T ss_pred             eEEEEEEeCCCCCchH-HHHHHHHhCCCCCCEEEeCCChhhcccCCcccchHHHHHHHHHHHHHh--cCCEEEecccccc
Confidence            4688999999875322 222222 111234569999999965321     1 1 12233333332  3347889999997


Q ss_pred             cc
Q 014212          294 KS  295 (429)
Q Consensus       294 ~~  295 (429)
                      ..
T Consensus       204 ~~  205 (426)
T 1xzw_A          204 DY  205 (426)
T ss_dssp             CC
T ss_pred             cc
Confidence            64

>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid phosphatase metalloenzyme, uteroferrin, hydrolase; HET: NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A* 2bq8_X 1qfc_A* 1qhw_A*

Probab=94.50  E-value=0.017  Score=53.06  Aligned_cols=72  Identities=17%  Similarity=0.025  Sum_probs=39.5

Q ss_pred             CceEEEccCCCCH---------HHHHHHHHH-cCCCCCCCCeEEccccccC-CC---CcHHHHHHHHHhh---hhCCCeE
Q 014212          222 KHFTVCGDVHGQF---------YDLLNIFEL-NGLPSEENPYLFNGDFVDR-GS---FSVEVILTLFAFK---CMCPSAI  284 (429)
Q Consensus       222 ~~~~v~GDihG~~---------~~l~~~l~~-~~~~~~~~~~~~lGD~vdr-G~---~s~e~~~~l~~lk---~~~p~~~  284 (429)
                      .++.++||+|...         ..+.+.+.. ... ...+.+|++||++.. |.   ...+....+..+.   ...+-.+
T Consensus         7 ~~~~~isD~h~~~~~~~~~~~~~~~~~~l~~~~~~-~~~d~vv~~GD~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~p~   85 (313)
T 1ute_A            7 LRFVAVGDWGGVPNAPFHTAREMANAKAIATTVKT-LGADFILSLGDNFYFTGVHDAKDKRFQETFEDVFSDPSLRNVPW   85 (313)
T ss_dssp             EEEEEECSCCCCSSTTSSCHHHHHHHHHHHHHHHH-HCCSEEEECSCCSTTTCCSSTTCTHHHHHTTTTSCSGGGTTCCE
T ss_pred             eEEEEEcccCCCCCccccCchHHHHHHHHHHHHHh-cCCCEEEECCCccCcCCCCCcchHHHHHHHHHHcCchhhcCCCE
Confidence            3589999999863         234444432 111 123469999999643 11   1123333322211   1114568


Q ss_pred             EEecCCcccc
Q 014212          285 YLSRGNHESK  294 (429)
Q Consensus       285 ~~lrGNhe~~  294 (429)
                      +.+.||||..
T Consensus        86 ~~v~GNHD~~   95 (313)
T 1ute_A           86 HVLAGNHDHL   95 (313)
T ss_dssp             EECCCHHHHH
T ss_pred             EEECCCCccC
Confidence            9999999974

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.00  E-value=0.35  Score=46.73  Aligned_cols=100  Identities=11%  Similarity=-0.083  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC--CCh----HHH
Q 014212           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQ---NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP--RYP----KGY   85 (429)
Q Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~----~~~   85 (429)
                      .++..+|..+++.|++++|.+.|.++......   -...+.....++...+++..|...+.++.....  .++    ...
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk  211 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK  211 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence            46778999999999999999999998876443   367788888999999999999999999976532  233    244


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 014212           86 YRRGAAYLAMGKFKEALKDFQQVKKLSPN  114 (429)
Q Consensus        86 ~~la~~~~~~g~~~eA~~~~~~al~~~p~  114 (429)
                      ...|.++...++|.+|...|..++.-...
T Consensus       212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~  240 (429)
T 4b4t_R          212 TYYGIHCLAVRNFKEAAKLLVDSLATFTS  240 (429)
T ss_dssp             HHHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence            55678888999999999999988876443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.76  E-value=0.28  Score=46.73  Aligned_cols=63  Identities=10%  Similarity=-0.049  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 014212           15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI   77 (429)
Q Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   77 (429)
                      .+...++..+...|++++|+..+.+++..+|.+..++..+-.++...|+..+|+..|+++.+.
T Consensus       172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~  234 (388)
T 2ff4_A          172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT  234 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            455667788899999999999999999999999999999999999999999999999987553

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=93.57  E-value=1.3  Score=42.02  Aligned_cols=93  Identities=16%  Similarity=0.056  Sum_probs=74.3

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC---CCCh----HHH
Q 014212           19 ALANEAFRAKKYSQAIDLYSQAIELNSQ--N----AVYYANRAFAHTKLEEYGSAIQDASKAIEID---PRYP----KGY   85 (429)
Q Consensus        19 ~~a~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~----~~~   85 (429)
                      .+|..|+..|+|.+|++.+.+..+....  +    ...+..-..+|..++++.++...+.+|....   +.+|    ...
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            7899999999999999999998874222  2    3456667888999999999999999987653   1223    345


Q ss_pred             HHHHHHHH-HcCCHHHHHHHHHHHHHh
Q 014212           86 YRRGAAYL-AMGKFKEALKDFQQVKKL  111 (429)
Q Consensus        86 ~~la~~~~-~~g~~~eA~~~~~~al~~  111 (429)
                      ..-|..+. ..++|.+|...|-.+++-
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence            66688999 899999999999999754

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=93.45  E-value=0.64  Score=48.40  Aligned_cols=49  Identities=16%  Similarity=0.139  Sum_probs=38.8

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 014212           21 ANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKA   74 (429)
Q Consensus        21 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   74 (429)
                      ...+...|++++|.+..+..     ++...|..+|..+.+.++++.|+.+|.++
T Consensus       659 f~~~l~~~~~~~A~~~~~~~-----~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          659 FELALKVGQLTLARDLLTDE-----SAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHTCHHHHHHHHTTC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             eehhhhcCCHHHHHHHHHhh-----CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            34557788888888887753     56788888888888888888888888875

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=93.25  E-value=0.51  Score=42.04  Aligned_cols=63  Identities=19%  Similarity=0.085  Sum_probs=58.6

Q ss_pred             HHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 014212           57 AHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA  119 (429)
Q Consensus        57 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~  119 (429)
                      .+++.|++++|++.....++.+|.++.....+...+.-.|+++.|...++.+.+++|+....-
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a   68 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA   68 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHH
Confidence            456789999999999999999999999999999999999999999999999999999986544

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=92.75  E-value=3.6  Score=33.86  Aligned_cols=68  Identities=10%  Similarity=-0.021  Sum_probs=55.8

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--h---------------CCCCHHH-HHHHHHHHHHhhCHHHHHHHHHH
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIE--L---------------NSQNAVY-YANRAFAHTKLEEYGSAIQDASK   73 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~---------------~p~~~~~-~~~lg~~~~~~g~~~~A~~~~~~   73 (429)
                      +++.+.+-.+.+|.+.++|..|+..++..++  .               +|.+... +..+|..+.+.|+-++|+.++..
T Consensus        60 NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~  139 (242)
T 3kae_A           60 NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVR  139 (242)
T ss_dssp             CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhh
Confidence            4566778889999999999999999999993  2               3444444 55689999999999999999999


Q ss_pred             HHHhCC
Q 014212           74 AIEIDP   79 (429)
Q Consensus        74 al~~~p   79 (429)
                      ....+|
T Consensus       140 Sf~~~~  145 (242)
T 3kae_A          140 SFGKSF  145 (242)
T ss_dssp             HHHHCC
T ss_pred             hcCCcc
Confidence            887765

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.88  E-value=3.5  Score=39.89  Aligned_cols=100  Identities=17%  Similarity=0.157  Sum_probs=79.0

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHhhCHHHHHHHHHHHHH---hCCCCh
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELN--SQN----AVYYANRAFAHTKLEEYGSAIQDASKAIE---IDPRYP   82 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~   82 (429)
                      ..+.....+|..+...|++.+|...+.....-.  ..+    ...+......+...+++.+|...++++..   -.+..+
T Consensus       135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~  214 (445)
T 4b4t_P          135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYE  214 (445)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcH
Confidence            456777889999999999999999999876421  122    45677788899999999999999998742   233333


Q ss_pred             ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014212           83 ----KGYYRRGAAYLAMGKFKEALKDFQQVKKL  111 (429)
Q Consensus        83 ----~~~~~la~~~~~~g~~~eA~~~~~~al~~  111 (429)
                          ..+...|..+...++|.+|..+|..++..
T Consensus       215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence                35667789999999999999999999874

>3tgh_A Glideosome-associated protein 50; phosphatase fold, NOT A phosphatase, motor protein, structur protein, membrane protein; 1.70A {Plasmodium falciparum 3D7}

Probab=91.85  E-value=0.046  Score=51.21  Aligned_cols=72  Identities=10%  Similarity=0.014  Sum_probs=40.1

Q ss_pred             ceEEEccCCCCHHHHHH---HHHHcCCCCCCCCeEEccccccCCCCcH------HHHHHHHHhh-hhCCCeEEEecCCcc
Q 014212          223 HFTVCGDVHGQFYDLLN---IFELNGLPSEENPYLFNGDFVDRGSFSV------EVILTLFAFK-CMCPSAIYLSRGNHE  292 (429)
Q Consensus       223 ~~~v~GDihG~~~~l~~---~l~~~~~~~~~~~~~~lGD~vdrG~~s~------e~~~~l~~lk-~~~p~~~~~lrGNhe  292 (429)
                      ++.++||.|.....-..   .+.........+-++++||+++.|..+.      +.+.-++... ....--++.+.||||
T Consensus         5 ~f~~igD~g~g~~~q~~va~~m~~~~~~~~pd~vl~~GD~~y~G~~~~~d~~~~~~f~~~~~~~~~~~~~P~~~vlGNHD   84 (342)
T 3tgh_A            5 RFASLGDWGKDTKGQILNAKYFKQFIKNERVTFIVSPGSNFIDGVKGLNDPAWKNLYEDVYSEEKGDMYMPFFTVLGTRD   84 (342)
T ss_dssp             EEEECCSCBSCCHHHHHHHHHHHHHHHHTTCCEEEECSCSBTTCCCSTTCTHHHHHTTTTSCCGGGTTCSEEEECCCHHH
T ss_pred             EEEEEecCCCCCchHHHHHHHHHHHHhhcCCCEEEECCCcccCCCCcCccHHHHHHHHHHhhhhhhhhCCCEEEeCCCCc
Confidence            48999999975432222   2211110122346999999998887532      2222222111 122345799999999


Q ss_pred             cc
Q 014212          293 SK  294 (429)
Q Consensus       293 ~~  294 (429)
                      ..
T Consensus        85 ~~   86 (342)
T 3tgh_A           85 WT   86 (342)
T ss_dssp             HT
T ss_pred             cC
Confidence            54

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=91.70  E-value=0.85  Score=47.41  Aligned_cols=121  Identities=17%  Similarity=0.089  Sum_probs=83.0

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 014212           18 KALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGK   97 (429)
Q Consensus        18 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~   97 (429)
                      ...+..+.+.|.+++|++..+        ++...+   ....+.|++++|.+..+     ..++...|..+|..+.+.++
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~f---~~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~  696 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISP--------DQDQKF---ELALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFN  696 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCC--------CHHHHH---HHHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCChHHheecCC--------Ccchhe---ehhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCC
Confidence            555666777788888776553        333333   34567899999998753     44778999999999999999


Q ss_pred             HHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCC-ccccccccccccccc
Q 014212           98 FKEALKDFQQVK--------KLSPNDPDAAQKVKECEKAVKKLKFEEAIAVP-ESERHSVADSIDYQS  156 (429)
Q Consensus        98 ~~eA~~~~~~al--------~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~-~~~~~~~a~~~~~~~  156 (429)
                      ++.|+.+|.++-        .....+.+.+..++......++  ++.|...+ ..++.++|.+++.+.
T Consensus       697 ~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~--~~~A~~~~~~~g~~~~a~~~~~~~  762 (814)
T 3mkq_A          697 FKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGK--FNLAFNAYWIAGDIQGAKDLLIKS  762 (814)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCc--hHHHHHHHHHcCCHHHHHHHHHHc
Confidence            999999999862        2235677777777766666555  55555433 245666665555444

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=91.39  E-value=1.2  Score=37.04  Aligned_cols=49  Identities=8%  Similarity=-0.038  Sum_probs=41.9

Q ss_pred             HHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 014212           22 NEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAI   75 (429)
Q Consensus        22 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   75 (429)
                      ......|+++.|.+..++.     ++...|..+|...+..|+++-|..+|+++-
T Consensus        13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence            4556789999999887765     778899999999999999999999998863

>3qfk_A Uncharacterized protein; structural genomics, center for structural genomics of infec diseases, csgid, phosphoesterase, hydrolase; HET: MSE AKG; 2.05A {Staphylococcus aureus subsp}

Probab=91.31  E-value=0.098  Score=52.18  Aligned_cols=66  Identities=24%  Similarity=0.338  Sum_probs=41.1

Q ss_pred             ceEEEccCCCCHH----------------HHHHHHHHcCCCCCCCCeEEccccccCCCCc----------HHHHHHHHHh
Q 014212          223 HFTVCGDVHGQFY----------------DLLNIFELNGLPSEENPYLFNGDFVDRGSFS----------VEVILTLFAF  276 (429)
Q Consensus       223 ~~~v~GDihG~~~----------------~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s----------~e~~~~l~~l  276 (429)
                      ++..+.|+||.+.                .+..++++.....+..-++..||.++.++.+          ..++..+-.+
T Consensus        21 ~Il~tnD~Hg~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~~~~l~l~~GD~~~gs~~~~~~~~~~~~~~~~~~~ln~l  100 (527)
T 3qfk_A           21 AFYVVSDVHGYIFPTDFTSRNQYQPMGLLLANHVIEQDRRQYDQSFKIDNGDFLQGSPFCNYLIAHSGSSQPLVDFYNRM  100 (527)
T ss_dssp             EEEEECCCTTCCSSCCSSSTTCCCSCSHHHHHHHHHHHHTTSSEEEEEECSCCSSSSHHHHHHHHTTCSSHHHHHHHHHT
T ss_pred             EEEEEeccCCCccCcccccCCCcCCCcHHHHHHHHHHHHhcCCCEEEEECCCcCCCcHHHHHHhhcccCcchHHHHHHhc
Confidence            4788899999762                5556666554322222345579999987553          3455555555


Q ss_pred             hhhCCCeEEEecCCccc
Q 014212          277 KCMCPSAIYLSRGNHES  293 (429)
Q Consensus       277 k~~~p~~~~~lrGNhe~  293 (429)
                      .   ++  ++..||||.
T Consensus       101 g---~D--~~t~GNHef  112 (527)
T 3qfk_A          101 A---FD--FGTLGNHEF  112 (527)
T ss_dssp             C---CC--EECCCGGGG
T ss_pred             C---Cc--EEecccccc
Confidence            3   33  445799993

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=90.91  E-value=4.8  Score=42.98  Aligned_cols=101  Identities=7%  Similarity=-0.036  Sum_probs=81.5

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-CCChHHHH
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIEL----NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-PRYPKGYY   86 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~   86 (429)
                      .....+..+-+.|.+.|+.++|.+.+.+.-+.    ..-+...|..+-..|.+.|++++|.+.|++..+.. .-+...|.
T Consensus       125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn  204 (1134)
T 3spa_A          125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA  204 (1134)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence            33456888889999999999999999764432    34467788999999999999999999999998753 12667788


Q ss_pred             HHHHHHHHcCC-HHHHHHHHHHHHHhC
Q 014212           87 RRGAAYLAMGK-FKEALKDFQQVKKLS  112 (429)
Q Consensus        87 ~la~~~~~~g~-~~eA~~~~~~al~~~  112 (429)
                      .+-.++.+.|+ .++|...|++..+..
T Consensus       205 tLI~glcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          205 AALQCMGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence            88888999998 478899999988864

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=89.58  E-value=1.7  Score=41.26  Aligned_cols=100  Identities=9%  Similarity=0.004  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------------------h---CCCCHH---------------------
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIE-------------------L---NSQNAV---------------------   49 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-------------------~---~p~~~~---------------------   49 (429)
                      ...+.+.+|..|.+.|++++-.+.+.....                   .   -|+...                     
T Consensus        18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~fl   97 (394)
T 3txn_A           18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFL   97 (394)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            447899999999999999987777655421                   1   233211                     


Q ss_pred             ---HHHHHHHHHHHhhCHHHHHHHHHHHHHhCC--CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 014212           50 ---YYANRAFAHTKLEEYGSAIQDASKAIEIDP--RY----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLS  112 (429)
Q Consensus        50 ---~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~  112 (429)
                         .-..+|..|+..|+|.+|.+.+.+.++--.  ++    .+.+.....+|..++++.++...+.+|....
T Consensus        98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~  169 (394)
T 3txn_A           98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA  169 (394)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence               113789999999999999999998876321  12    3567777889999999999999999997654

>2z1a_A 5'-nucleotidase; metal-binding, nucleotide-binding, hydrolase, structural genomics, NPPSFA; HET: THM; 1.75A {Thermus thermophilus} SCOP: d.114.1.1 d.159.1.2

Probab=88.99  E-value=0.29  Score=49.03  Aligned_cols=67  Identities=15%  Similarity=0.189  Sum_probs=41.0

Q ss_pred             ceEEEccCCCCH-----------------HHHHHHHHHcCCCCCCCCeEEccccccCCCCc-----HHHHHHHHHhhhhC
Q 014212          223 HFTVCGDVHGQF-----------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFS-----VEVILTLFAFKCMC  280 (429)
Q Consensus       223 ~~~v~GDihG~~-----------------~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s-----~e~~~~l~~lk~~~  280 (429)
                      ++..++|+||.+                 ..+..++++.....+..-++..||++++.+.+     ..++..+-.+   .
T Consensus        31 ~Il~~~D~H~~~~~~~~~~~~~~~~~gg~~~~~~~v~~~r~~~~~~l~l~~GD~~~gs~~~~~~~~~~~~~~ln~l---g  107 (552)
T 2z1a_A           31 TLVHTNDTHAHLEPVELTLSGEKTPVGGVARRVALFDRVWARAKNPLFLDAGDVFQGTLYFNQYRGLADRYFMHRL---R  107 (552)
T ss_dssp             EEEEECCCTTCCSCEEEECSSSEEEECCHHHHHHHHHHHHHHSSSEEEEECSCCSSSSHHHHHHTTHHHHHHHHHT---T
T ss_pred             EEEEEcccccCcccccccCcccccccCCHHHHHHHHHHHHhhCCCEEEEeCCCCCCCcHHHHHhCCcHHHHHHHhc---C
Confidence            378899999753                 45555665443211222466789999977642     3455555444   3


Q ss_pred             CCeEEEecCCcccc
Q 014212          281 PSAIYLSRGNHESK  294 (429)
Q Consensus       281 p~~~~~lrGNhe~~  294 (429)
                      ++  ++..||||..
T Consensus       108 ~d--~~~lGNHEfd  119 (552)
T 2z1a_A          108 YR--AMALGNHEFD  119 (552)
T ss_dssp             CC--EEECCGGGGT
T ss_pred             CC--cccccccccc
Confidence            34  5567999963

>1hp1_A 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme, hydrolase, domain movement; HET: ATP; 1.70A {Escherichia coli} SCOP: d.114.1.1 d.159.1.2 PDB: 1ush_A 2ush_A 1hpu_A* 1ho5_A* 1oi8_A 1oid_A 1oie_A

Probab=88.93  E-value=0.15  Score=50.75  Aligned_cols=67  Identities=18%  Similarity=0.107  Sum_probs=40.3

Q ss_pred             ceEEEccCCCCHH----------HHHHHHHHcCCC----CCCCCeEEccccccCCCCc-----HHHHHHHHHhhhhCCCe
Q 014212          223 HFTVCGDVHGQFY----------DLLNIFELNGLP----SEENPYLFNGDFVDRGSFS-----VEVILTLFAFKCMCPSA  283 (429)
Q Consensus       223 ~~~v~GDihG~~~----------~l~~~l~~~~~~----~~~~~~~~lGD~vdrG~~s-----~e~~~~l~~lk~~~p~~  283 (429)
                      ++..++|+||.+.          .+..+++.....    ....-++..||+++..+.+     ..++..+-.+.   ++ 
T Consensus        10 ~Il~~~D~H~~~~~~~~~~~G~~~~~~~v~~~r~~~~~~~~~~lvl~~GD~~~g~~~~~~~~~~~~~~~ln~lg---~d-   85 (516)
T 1hp1_A           10 TVLHTNDHHGHFWRNEYGEYGLAAQKTLVDGIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLVG---YD-   85 (516)
T ss_dssp             EEEEECCCTTCCSCCTTSCCCHHHHHHHHHHHHHHHHHHTCEEEEEECSCCSSSCHHHHTTTTHHHHHHHHHHT---CC-
T ss_pred             EEEEecccccCccCCCCCCcCHHHHHHHHHHHHHhhhccCCCEEEEeCCccCCCcchhhhcCCcHHHHHHhccC---CC-
Confidence            4788999999743          344444433211    1123477789999765532     34555555553   33 


Q ss_pred             EEEecCCcccc
Q 014212          284 IYLSRGNHESK  294 (429)
Q Consensus       284 ~~~lrGNhe~~  294 (429)
                       ++..||||..
T Consensus        86 -~~~~GNHEfd   95 (516)
T 1hp1_A           86 -AMAIGNHEFD   95 (516)
T ss_dssp             -EEECCGGGGS
T ss_pred             -EEeecccccc
Confidence             5668999963

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=88.37  E-value=2.1  Score=46.86  Aligned_cols=93  Identities=14%  Similarity=0.101  Sum_probs=69.9

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh---C-----------------
Q 014212           19 ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI---D-----------------   78 (429)
Q Consensus        19 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~-----------------   78 (429)
                      .+...+...+.++-|.+    .+...|.++...+.+|.++...|++++|..+|++|-.-   +                 
T Consensus       817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~  892 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY  892 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred             HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence            34455667777765543    44567888888899999999999999999999887311   0                 


Q ss_pred             ---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 014212           79 ---PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND  115 (429)
Q Consensus        79 ---p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~  115 (429)
                         ...+..|+.+..++.+.+.++.+++.-+.|++..+.+
T Consensus       893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~  932 (1139)
T 4fhn_B          893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETD  932 (1139)
T ss_dssp             TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSC
T ss_pred             cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCC
Confidence               1123456777888999999999999999999887543

>4h2g_A 5'-nucleotidase; dimer, hydrolase, phosphatase, extracellular; HET: ADN; 1.55A {Homo sapiens} PDB: 4h2f_A* 4h1y_P* 4h2i_A* 4h1s_A* 4h2b_A*

Probab=88.34  E-value=0.28  Score=49.05  Aligned_cols=66  Identities=21%  Similarity=0.181  Sum_probs=41.2

Q ss_pred             ceEEEccCCCCH--------------------HHHHHHHHHcCCCCCCCCeEEccccccCCCCc-----HHHHHHHHHhh
Q 014212          223 HFTVCGDVHGQF--------------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFS-----VEVILTLFAFK  277 (429)
Q Consensus       223 ~~~v~GDihG~~--------------------~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s-----~e~~~~l~~lk  277 (429)
                      ++..+.|+||.+                    ..+..++++.....+..-++..||.++..+.+     ..++..+-.+.
T Consensus        27 ~Il~~nD~Hg~~~~~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~ln~lg  106 (546)
T 4h2g_A           27 TILHTNDVHSRLEQTSEDSSKCVDASRCMGGVARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHFMNALR  106 (546)
T ss_dssp             EEEEECCCTTCCSCBCTTSSBCSSGGGCBCCHHHHHHHHHHHHHHCSSEEEEECSCCSSSSHHHHHHTTHHHHHHHHHHT
T ss_pred             EEEEecccccCCcccccccccccccccccCCHHHHHHHHHHHHhhCCCEEEEECCccCCCchhhhhhCChHHHHHHHhcC
Confidence            378889999753                    44555655543222223467789999977643     44555555553


Q ss_pred             hhCCCeEEEecCCccc
Q 014212          278 CMCPSAIYLSRGNHES  293 (429)
Q Consensus       278 ~~~p~~~~~lrGNhe~  293 (429)
                         ++  ++..||||.
T Consensus       107 ---~d--~~~~GNHEf  117 (546)
T 4h2g_A          107 ---YD--AMALGNHEF  117 (546)
T ss_dssp             ---CS--EEECCGGGG
T ss_pred             ---Cc--EEeccCccc
Confidence               34  456799994

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=88.00  E-value=1  Score=49.42  Aligned_cols=95  Identities=14%  Similarity=0.022  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----------------------CCCCHHHHHHHHHHHHHhhCHHHHHHH
Q 014212           14 AEELKALANEAFRAKKYSQAIDLYSQAIEL-----------------------NSQNAVYYANRAFAHTKLEEYGSAIQD   70 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~   70 (429)
                      +..-+-+|.+++..|++++|.++|++|..-                       ....+..|......+.+.+.++.+++.
T Consensus       842 ~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~f  921 (1139)
T 4fhn_B          842 PIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEF  921 (1139)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             cHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            334588999999999999999999987421                       111245677888888999999999999


Q ss_pred             HHHHHHhCCCC-h----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014212           71 ASKAIEIDPRY-P----KGYYRRGAAYLAMGKFKEALKDFQQV  108 (429)
Q Consensus        71 ~~~al~~~p~~-~----~~~~~la~~~~~~g~~~eA~~~~~~a  108 (429)
                      .+.|++..+.+ .    ..|.++-..+..+|+|++|...+...
T Consensus       922 a~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~  964 (1139)
T 4fhn_B          922 SLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL  964 (1139)
T ss_dssp             HHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred             HHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence            99999876543 2    25788889999999999999887544

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=84.82  E-value=1.4  Score=43.30  Aligned_cols=67  Identities=13%  Similarity=0.020  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 014212           48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-------PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP  116 (429)
Q Consensus        48 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~  116 (429)
                      +..+..+-..|...+.+++|.....++.  .|.+       ...+|.+|.++.-+++|.+|.+++..|++..|.+.
T Consensus       231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~  304 (523)
T 4b4t_S          231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS  304 (523)
T ss_dssp             HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred             HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence            5667778889999999999999999885  4432       35678889999999999999999999999988654

>3ztv_A NAD nucleotidase, NADN; hydrolase, NAD pyrophosphatase, NMN nucleotidase, periplasmi enzyme, CD73; HET: ADN; 1.30A {Haemophilus influenzae} PDB: 3zu0_A*

Probab=84.04  E-value=0.74  Score=46.36  Aligned_cols=66  Identities=15%  Similarity=0.005  Sum_probs=39.3

Q ss_pred             ceEEEccCCCCHH---------------------HHHHHHHHcCCCCCCCCeEEccccccCCC-----CcHHHHHHHHHh
Q 014212          223 HFTVCGDVHGQFY---------------------DLLNIFELNGLPSEENPYLFNGDFVDRGS-----FSVEVILTLFAF  276 (429)
Q Consensus       223 ~~~v~GDihG~~~---------------------~l~~~l~~~~~~~~~~~~~~lGD~vdrG~-----~s~e~~~~l~~l  276 (429)
                      ++..+.|+||.+.                     .+..++++........-++..||.++..+     ....++..+-.+
T Consensus        14 ~Il~tnD~Hg~~~~~~~~~~~~~~~~~~~~gG~arla~~i~~~r~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~l   93 (579)
T 3ztv_A           14 SILHINDHHSYLEPHETRINLNGQQTKVDIGGFSAVNAKLNKLRKKYKNPLVLHAGDAITGTLYFTLFGGSADAAVMNAG   93 (579)
T ss_dssp             EEEEECCCTTCCSCEEEEEEETTEEEEEEECCHHHHHHHHHHHHHHSSSEEEEECSCCSCSSHHHHTTTTHHHHHHHHHH
T ss_pred             EEEEeCccccCccCCccccccCCcccccccCCHHHHHHHHHHHHhhCCCEEEEeCCCCCCCceeeeecCCHHHHHHHHhc
Confidence            3788899998743                     34445554432212224666799998664     234455555555


Q ss_pred             hhhCCCeEEEecCCccc
Q 014212          277 KCMCPSAIYLSRGNHES  293 (429)
Q Consensus       277 k~~~p~~~~~lrGNhe~  293 (429)
                      .   ++-  +..||||.
T Consensus        94 g---~D~--~tlGNHEf  105 (579)
T 3ztv_A           94 N---FHY--FTLGNHEF  105 (579)
T ss_dssp             T---CSE--EECCSGGG
T ss_pred             C---cCe--eecccccc
Confidence            3   343  45799994

>1t71_A Phosphatase, conserved HYPO; crystal, X-RAY crystallography, structural GENO berkeley structural genomics center, BSGC, PSI; 2.10A {Mycoplasma pneumoniae M129} SCOP: d.159.1.9

Probab=81.72  E-value=0.69  Score=41.73  Aligned_cols=69  Identities=20%  Similarity=0.150  Sum_probs=41.4

Q ss_pred             CceEEEccCCCCH--HHHHHHHHHcCCCCCCCCeEEccccccCC-CCcHHHHHHHHHhhhhCCCeEEEecCCccccc
Q 014212          222 KHFTVCGDVHGQF--YDLLNIFELNGLPSEENPYLFNGDFVDRG-SFSVEVILTLFAFKCMCPSAIYLSRGNHESKS  295 (429)
Q Consensus       222 ~~~~v~GDihG~~--~~l~~~l~~~~~~~~~~~~~~lGD~vdrG-~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~  295 (429)
                      .++..+||+||..  ..+...+++.......+.++..||-.-.| +.+..+...+..+..   +-+.  .||||.-.
T Consensus         5 m~ilf~GDv~G~~G~~~l~~~l~~lr~~~~~d~vi~Ngen~~gG~g~~~~~~~~ln~~G~---Da~T--lGNHefD~   76 (281)
T 1t71_A            5 IKFIFLGDVYGKAGRNIIKNNLAQLKSKYQADLVIVNAENTTHGKGLSLKHYEFLKEAGV---NYIT--MGNHTWFQ   76 (281)
T ss_dssp             CEEEEECEEBHHHHHHHHHTTHHHHHHHHTCSEEEEECTBTTTTSSCCHHHHHHHHHHTC---CEEE--CCTTTTCC
T ss_pred             EEEEEECCcCChHHHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCcCHHHHHHHHhcCC---CEEE--EccCcccC
Confidence            3589999999875  22333444332111124567777666545 557788888877753   4333  49999653

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=80.79  E-value=4.7  Score=33.44  Aligned_cols=55  Identities=20%  Similarity=0.096  Sum_probs=45.7

Q ss_pred             CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014212           46 QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQV  108 (429)
Q Consensus        46 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a  108 (429)
                      .|+...+.++   .+.|+++.|.+..+..     ++...|..||......|+++-|..+|+++
T Consensus         6 ~D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B            6 QDPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             SCHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             CChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            3556666554   5799999999987654     67889999999999999999999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	429
d1s95a_	324	d.159.1.3 (A:) Serine/threonine protein phosphatas	1e-107
d1auia_	473	d.159.1.3 (A:) Protein phosphatase-2B (PP-2B, calc	2e-85
d3c5wc1	288	d.159.1.3 (C:6-293) Protein phosphatase 2A catalyt	3e-80
d1jk7a_	294	d.159.1.3 (A:) Protein phosphatase-1 (PP-1) {Human	3e-76
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	3e-29
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	1e-22
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	4e-08
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	5e-20
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	5e-04
d1g5ba_	219	d.159.1.3 (A:) lambda ser/thr protein phosphatase	1e-16
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-16
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-15
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-14
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-14
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-13
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.001
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.002
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.004
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	8e-16
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	9e-16
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	2e-15
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	3e-14
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	3e-14
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	5e-13
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	5e-06
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	1e-12
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	8e-11
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	4e-07
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-06
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	6e-06
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	9e-05
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	3e-09
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	4e-05
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	5e-09
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	4e-06
d1nnwa_	251	d.159.1.5 (A:) Hypothetical protein PF1291 {Archae	2e-08
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	9e-08
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	6e-06
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	3e-05
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	1e-04
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	4e-04
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	2e-07
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	2e-07
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	1e-06
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	2e-06
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	2e-04
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	3e-07
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	4e-06
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	1e-05
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	1e-06
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	1e-04
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	3e-06
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	2e-04
d1su1a_	184	d.159.1.7 (A:) Phosphodiesterase yfcE {Escherichia	0.001
d1ouva_	265	a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He	0.002

>d1s95a_ d.159.1.3 (A:) Serine/threonine protein phosphatase 5, PP5 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Protein serine/threonine phosphatase
domain: Serine/threonine protein phosphatase 5, PP5
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  318 bits (815), Expect = e-107
 Identities = 160/279 (57%), Positives = 205/279 (73%), Gaps = 16/279 (5%)

Query: 163 YSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGK 222
           YSG ++E   +T+ F+K++M  +K+QK LH++ A+QI++Q +E+L  L +LV+  + + +
Sbjct: 1   YSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETE 60

Query: 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPS 282
             TVCGD HGQFYDLLNIFELNGLPSE NPY+FNGDFVDRGSFSVEVILTLF FK + P 
Sbjct: 61  KITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPD 120

Query: 283 AIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGL 342
             +L RGNHE+ +MN+IYGFEGEV++K +    ELF+EVF  LPLA  +N KV ++HGGL
Sbjct: 121 HFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGL 180

Query: 343 FSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVG------------ 390
           FS DGV L DI+ I+R  +PP+ G MC+LLWSDPQP  GR  SKRGV             
Sbjct: 181 FSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFL 240

Query: 391 ----LSFVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQ 425
               L +++RSHEVK EGYE+ H G+ +TVFSAPNYCDQ
Sbjct: 241 EENNLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQ 279

>d1auia_ d.159.1.3 (A:) Protein phosphatase-2B (PP-2B, calcineurin A subunit) {Human (Homo sapiens) [TaxId: 9606]} Length = 473

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Protein serine/threonine phosphatase
domain: Protein phosphatase-2B (PP-2B, calcineurin A subunit)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  266 bits (682), Expect = 2e-85
 Identities = 103/278 (37%), Positives = 150/278 (53%), Gaps = 36/278 (12%)

Query: 178 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDL 237
           V  +      +  L +  A +I+ +   +LR   +L+DID P     TVCGD+HGQF+DL
Sbjct: 30  VDILKAHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAP----VTVCGDIHGQFFDL 85

Query: 238 LNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMN 297
           + +FE+ G P+    YLF GD+VDRG FS+E +L L+A K + P  ++L RGNHE + + 
Sbjct: 86  MKLFEVGGSPANTR-YLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLT 144

Query: 298 KIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTID 357
           + + F+ E + K SE   +   + F CLPLA ++NQ+   VHGGL   +   L DI+ +D
Sbjct: 145 EYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLCVHGGLSP-EINTLDDIRKLD 203

Query: 358 RFCEPPEEGLMCELLWSDPQPLPGR--------GPSKRGVGLSF---------------- 393
           RF EPP  G MC++LWSDP    G           + RG    +                
Sbjct: 204 RFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLS 263

Query: 394 VVRSHEVKDEGYEIEHDGK------LITVFSAPNYCDQ 425
           ++R+HE +D GY +    +      LIT+FSAPNY D 
Sbjct: 264 ILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDV 301

>d3c5wc1 d.159.1.3 (C:6-293) Protein phosphatase 2A catalytic subunit alpha isoform, PP2A-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Protein serine/threonine phosphatase
domain: Protein phosphatase 2A catalytic subunit alpha isoform, PP2A-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  247 bits (632), Expect = 3e-80
 Identities = 97/265 (36%), Positives = 143/265 (53%), Gaps = 23/265 (8%)

Query: 178 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDL 237
           + + ++     K L +     +  + +E+L    ++ ++  P     TVCGDVHGQF+DL
Sbjct: 5   LDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCP----VTVCGDVHGQFHDL 60

Query: 238 LNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMN 297
           + +F + G   + N YLF GD+VDRG +SVE +  L A K      I + RGNHES+ + 
Sbjct: 61  MELFRIGGKSPDTN-YLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQIT 119

Query: 298 KIYGFEGEVRSKLSETFV-ELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTI 356
           ++YGF  E   K     V + F ++F  LPL  +++ ++F +HGGL       L  I+ +
Sbjct: 120 QVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSP-SIDTLDHIRAL 178

Query: 357 DRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVG----------------LSFVVRSHEV 400
           DR  E P EG MC+LLWSDP    G G S RG G                L+ V R+H++
Sbjct: 179 DRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQL 238

Query: 401 KDEGYEIEHDGKLITVFSAPNYCDQ 425
             EGY   HD  ++T+FSAPNYC +
Sbjct: 239 VMEGYNWCHDRNVVTIFSAPNYCYR 263

>d1jk7a_ d.159.1.3 (A:) Protein phosphatase-1 (PP-1) {Human (Homo sapiens), beta isoform [TaxId: 9606]} Length = 294

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Protein serine/threonine phosphatase
domain: Protein phosphatase-1 (PP-1)
species: Human (Homo sapiens), beta isoform [TaxId: 9606]

 Score =  237 bits (605), Expect = 3e-76
 Identities = 98/255 (38%), Positives = 147/255 (57%), Gaps = 23/255 (9%)

Query: 188 QKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLP 247
              L +     + L++RE+  + P L++++ P      +CGD+HGQ+YDLL +FE  G P
Sbjct: 22  NVQLQENEIRGLCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFP 77

Query: 248 SEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVR 307
             E+ YLF GD+VDRG  S+E I  L A+K   P   +L RGNHE  S+N+IYGF  E +
Sbjct: 78  -PESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECK 136

Query: 308 SKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGL 367
            + +    + F + F CLP+A ++++K+F  HGGL   D   +  I+ I R  + P++GL
Sbjct: 137 RRYNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSP-DLQSMEQIRRIMRPTDVPDQGL 195

Query: 368 MCELLWSDPQPLP-GRGPSKRGVG----------------LSFVVRSHEVKDEGYEIEHD 410
           +C+LLWSDP     G G + RGV                 L  + R+H+V ++GYE    
Sbjct: 196 LCDLLWSDPDKDVLGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAK 255

Query: 411 GKLITVFSAPNYCDQ 425
            +L+T+FSAPNYC +
Sbjct: 256 RQLVTLFSAPNYCGE 270

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 3e-29
 Identities = 82/158 (51%), Positives = 113/158 (71%), Gaps = 1/158 (0%)

Query: 7   ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGS 66
            + ++ RAEELK  AN+ F+AK Y  AI  YSQAIELN  NA+YY NR+ A+ + E YG 
Sbjct: 3   ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGY 62

Query: 67  AIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126
           A+ DA++AIE+D +Y KGYYRR A+ +A+GKF+ AL+D++ V K+ P+D DA  K +EC 
Sbjct: 63  ALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 122

Query: 127 KAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYS 164
           K VK+  FE AIA  E +R SV DS+D +S+ +E +YS
Sbjct: 123 KIVKQKAFERAIAGDEHKR-SVVDSLDIESMTIEDEYS 159

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 93.1 bits (230), Expect = 1e-22
 Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 2/137 (1%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           A+ELK   N  F  +KY +A   Y +AI  N   AVYY NRA  + K+++   A+ D  +
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
           A+E+D +  K ++  G   L M  + EA+ + Q+   L+           +   A++  K
Sbjct: 64  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG--DDIPSALRIAK 121

Query: 134 FEEAIAVPESERHSVAD 150
            +   ++ E   H  ++
Sbjct: 122 KKRWNSIEERRIHQESE 138

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.7 bits (120), Expect = 4e-08
 Identities = 13/107 (12%), Positives = 35/107 (32%), Gaps = 5/107 (4%)

Query: 25  FRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG 84
              + Y +AI    +A  L  +  + + +   +  ++ +          +IE    + + 
Sbjct: 83  LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW-----NSIEERRIHQES 137

Query: 85  YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131
                   L   + +  L++ Q+  +   +D     +    E    K
Sbjct: 138 ELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDK 184

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.4 bits (205), Expect = 5e-20
 Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 8/126 (6%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDAS 72
           +A + K L N+A++ K +  A+  Y +A EL+  N  Y  N+A  + +  +Y    +   
Sbjct: 3   QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62

Query: 73  KAIEIDPRYPKGY-------YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125
           KAIE+     + Y        R G +Y    K+K+A+  + +        PD  +K ++ 
Sbjct: 63  KAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQA 121

Query: 126 EKAVKK 131
           EK +K+
Sbjct: 122 EKILKE 127

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 5e-04
 Identities = 15/99 (15%), Positives = 42/99 (42%), Gaps = 5/99 (5%)

Query: 46  QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDF 105
           + A+          K +++ +A++   KA E+DP        + A Y   G + +  +  
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELC 61

Query: 106 QQVKKLSPNDPDAAQKVKECE----KAVKKL-KFEEAIA 139
           ++  ++   + +  +++ +       +  K  K+++AI 
Sbjct: 62  EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIH 100

>d1g5ba_ d.159.1.3 (A:) lambda ser/thr protein phosphatase {Bacteriophage lambda [TaxId: 10710]} Length = 219

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Protein serine/threonine phosphatase
domain: lambda ser/thr protein phosphatase
species: Bacteriophage lambda [TaxId: 10710]

 Score = 76.4 bits (187), Expect = 1e-16
 Identities = 35/209 (16%), Positives = 68/209 (32%), Gaps = 33/209 (15%)

Query: 216 IDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFA 275
           ID    ++  V GD+HG + +L+N  +  G  ++++  +  GD VDRG+ +VE +     
Sbjct: 7   IDGSKYRNIWVVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECL----- 61

Query: 276 FKCMCPSAIYLSRGNHESKSMNKIYGFEGEVR------------SKLSETFVELFAEVFC 323
            + +        RGNHE   ++ +                        E   +  A    
Sbjct: 62  -ELITFPWFRAVRGNHEQMMIDGLSERGNVNHWLLNGGGWFFNLDYDKEILAKALAHKAD 120

Query: 324 CLPLAHVL---NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLP 380
            LPL   L   ++K  + H      +      +                E + +    + 
Sbjct: 121 ELPLIIELVSKDKKYVICHADYPFDEYEFGKPVDHQQVIW-------NRERISNSQNGIV 173

Query: 381 GRGPSKRGVGLSFVVRSHEVKDEGYEIEH 409
                K   G    +  H    +  +  +
Sbjct: 174 -----KEIKGADTFIFGHTPAVKPLKFAN 197

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.9 bits (193), Expect = 1e-16
 Identities = 29/154 (18%), Positives = 54/154 (35%), Gaps = 14/154 (9%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           A     LA   +       AID Y +AIEL       Y N A A  +      A    + 
Sbjct: 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNT 296

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
           A+ + P +              G  +EA++ +++  ++ P    A   +    +     K
Sbjct: 297 ALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG--K 354

Query: 134 FEEAIAVPESERHSVADSIDYQSIEVEPQYSGAR 167
            +EA+   +            ++I + P ++ A 
Sbjct: 355 LQEALMHYK------------EAIRISPTFADAY 376

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.3 bits (181), Expect = 4e-15
 Identities = 13/79 (16%), Positives = 25/79 (31%)

Query: 17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE 76
             LA+  ++A  +  A     Q       N       +  H +      +   ++ AI+
Sbjct: 2  PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 77 IDPRYPKGYYRRGAAYLAM 95
           +P   + Y   G  Y   
Sbjct: 62 QNPLLAEAYSNLGNVYKER 80

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.2 bits (178), Expect = 1e-14
 Identities = 33/154 (21%), Positives = 64/154 (41%), Gaps = 14/154 (9%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
            +    L N    A+ + +A+  Y +A+ L+  +AV + N A  + +      AI    +
Sbjct: 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR 262

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133
           AIE+ P +P  Y     A    G   EA   +    +L P   D+   +   ++  ++  
Sbjct: 263 AIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR--EQGN 320

Query: 134 FEEAIAVPESERHSVADSIDYQSIEVEPQYSGAR 167
            EEA+ +              +++EV P+++ A 
Sbjct: 321 IEEAVRLYR------------KALEVFPEFAAAH 342

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.5 bits (171), Expect = 6e-14
 Identities = 19/77 (24%), Positives = 32/77 (41%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP 79
           LAN         +A+ LY +A+E+  + A  ++N A    +  +   A+    +AI I P
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370

Query: 80  RYPKGYYRRGAAYLAMG 96
            +   Y   G     M 
Sbjct: 371 TFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.3 bits (168), Expect = 2e-13
 Identities = 19/105 (18%), Positives = 38/105 (36%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           A     L        +   AI  + +A+ L+      Y N      +   +  A+    +
Sbjct: 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
           A+ + P +   +      Y   G    A+  +++  +L P+ PDA
Sbjct: 229 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA 273

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.1 bits (144), Expect = 1e-10
 Identities = 6/66 (9%), Positives = 19/66 (28%)

Query: 53  NRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112
             A    +  ++ +A +   +    +P          + +    +   +        K +
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 113 PNDPDA 118
           P   +A
Sbjct: 64  PLLAEA 69

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 2e-08
 Identities = 24/103 (23%), Positives = 35/103 (33%), Gaps = 2/103 (1%)

Query: 37  YSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMG 96
           Y +AIE     AV ++N         E   AI    KA+ +DP +   Y   G       
Sbjct: 158 YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEAR 217

Query: 97  KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIA 139
            F  A+  + +   LSPN       +            + AI 
Sbjct: 218 IFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG--LIDLAID 258

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 9/45 (20%), Positives = 20/45 (44%)

Query: 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAH 58
             L  L++  F+ ++  ++    + AI+ N   A  Y+N    +
Sbjct: 33 TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVY 77

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 11/49 (22%), Positives = 22/49 (44%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE 62
           A     LA+   +  K  +A+  Y +AI ++   A  Y+N      +++
Sbjct: 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 6/56 (10%), Positives = 17/56 (30%), Gaps = 2/56 (3%)

Query: 84  GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIA 139
           G           G F+ A +   Q+ +  P++      +       +  + + +  
Sbjct: 1   GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCR--RLDRSAH 54

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.2 bits (173), Expect = 8e-16
 Identities = 36/115 (31%), Positives = 63/115 (54%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDAS 72
           +  ELK   N+A        A+  YS+AI+L+  N V Y+NR+ A+ K  +Y  A +D  
Sbjct: 2   QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGC 61

Query: 73  KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127
           K +++ P + KGY R+ AA   + +F+EA + +++  K   N+P   + ++  E 
Sbjct: 62  KTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 72.7 bits (177), Expect = 9e-16
 Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 15/140 (10%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQA---------------IELNSQNAVYYANRAFA 57
           +A  +K      F+  KY QA+  Y +                    S     + N A  
Sbjct: 14  QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 73

Query: 58  HTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117
           + KL EY  A++   KA+ +D    KG YRRG A L M +F+ A  DF++V +++P +  
Sbjct: 74  YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 133

Query: 118 AAQKVKECEKAVKKLKFEEA 137
           A  ++  C+K  K+    + 
Sbjct: 134 ARLQIFMCQKKAKEHNERDR 153

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.3 bits (173), Expect = 2e-15
 Identities = 29/151 (19%), Positives = 68/151 (45%), Gaps = 16/151 (10%)

Query: 2   PNMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQA----------------IELNS 45
            +++  +  +  +E+LK + N  F+++ +  AI  Y++                  +L  
Sbjct: 15  VDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQP 74

Query: 46  QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDF 105
                  N      K+ ++  A+    +A+EIDP   K  YRR   +  + ++ +AL D 
Sbjct: 75  VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADL 134

Query: 106 QQVKKLSPNDPDAAQKVKECEKAVKKLKFEE 136
           ++ ++++P D     ++ + ++ +K  K +E
Sbjct: 135 KKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 165

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 70.5 bits (172), Expect = 3e-14
 Identities = 19/119 (15%), Positives = 44/119 (36%), Gaps = 1/119 (0%)

Query: 21  ANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR 80
              A    +  QA++L  +AI+ + ++A   ++         ++  A +   ++I++ P 
Sbjct: 3   WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62

Query: 81  YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIA 139
           Y  G  +      A    K+  +     K L  N+      V     ++    +E+   
Sbjct: 63  YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLV-SFNLSMVSQDYEQVSE 120

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 67.7 bits (164), Expect = 3e-14
 Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 16/144 (11%)

Query: 6   TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQ----------------AIELNSQNAV 49
           T+   V  A ++K   NE F+  + ++AI  Y +                  +  +    
Sbjct: 9   TDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 68

Query: 50  YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVK 109
              N A  + K ++Y  AI  ASK ++ID    K  Y+ G A +  G  +EA ++  +  
Sbjct: 69  CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 128

Query: 110 KLSPNDPDAAQKVKECEKAVKKLK 133
            L+PN+ D     + C   +K+ +
Sbjct: 129 SLNPNNLDIRNSYELCVNKLKEAR 152

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (158), Expect = 5e-13
 Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 3/112 (2%)

Query: 10  SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQ 69
           S+  A  L      A   K +  A+D +S   + +S+      N    +T L+    A +
Sbjct: 1   SLVEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSR---ICFNIGCMYTILKNMTEAEK 57

Query: 70  DASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121
             +++I  D      Y++RG  Y    K+  A+KD ++       +     K
Sbjct: 58  AFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYK 109

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 5e-06
 Identities = 20/132 (15%), Positives = 39/132 (29%), Gaps = 12/132 (9%)

Query: 1   MPNMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK 60
                       + +       EA    + +Q ID     ++          N AF + K
Sbjct: 73  YFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK 132

Query: 61  LEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120
            EE+  A +  + A  +                   K  +A++   + K   P      +
Sbjct: 133 KEEWKKAEEQLALATSMKSEP------------RHSKIDKAMECVWKQKLYEPVVIPVGR 180

Query: 121 KVKECEKAVKKL 132
             +  E+ V +L
Sbjct: 181 LFRPNERQVAQL 192

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.5 bits (153), Expect = 1e-12
 Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 15/140 (10%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQA---------------IELNSQNAVYYANRAFA 57
           ++  +K      F+  KY QA+  Y +                 +  +     + N A  
Sbjct: 12  QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 71

Query: 58  HTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117
           H KL+ + +AI+  +KA+E+D    KG  RRG A+LA+  F+ A  DFQ+V +L PN+  
Sbjct: 72  HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA 131

Query: 118 AAQKVKECEKAVKKLKFEEA 137
           A  ++  C++ +++    E 
Sbjct: 132 AKTQLAVCQQRIRRQLAREK 151

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.3 bits (148), Expect = 8e-11
 Identities = 11/105 (10%), Positives = 28/105 (26%), Gaps = 2/105 (1%)

Query: 14  AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
             +   L   + +    S  +   S +     Q+     +         +   A      
Sbjct: 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHC--LVHLGDIARYRNQTSQAESYYRH 177

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
           A ++ P   + Y +      + G     +  + +   +    P A
Sbjct: 178 AAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAA 222

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 4e-07
 Identities = 18/161 (11%), Positives = 37/161 (22%), Gaps = 21/161 (13%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYAN---RAFAHTKLEEYGSAIQDASKAIEIDPRYPKG 84
             +   I       +  +             F       Y   +Q+      +D      
Sbjct: 63  HAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVK 122

Query: 85  YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP-----DAAQKVKECEKAVKKLKF----- 134
             + G            +K                  D A+   +  +A    +      
Sbjct: 123 SSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV 182

Query: 135 ------EEAIAVPESERHSVADSIDY--QSIEVEPQYSGAR 167
                    +A+  S +     +I Y  +SI V+  +  A 
Sbjct: 183 PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAAS 223

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (114), Expect = 1e-06
 Identities = 16/87 (18%), Positives = 23/87 (26%), Gaps = 5/87 (5%)

Query: 32  QAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91
           Q+     QA  L +         A   T  +      Q   K +  D  Y      +   
Sbjct: 4   QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQ---KMLVTDLEYALDK--KVEQ 58

Query: 92  YLAMGKFKEALKDFQQVKKLSPNDPDA 118
            L    FK  +   Q   K   N   +
Sbjct: 59  DLWNHAFKNQITTLQGQAKNRANPNRS 85

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (108), Expect = 6e-06
 Identities = 17/92 (18%), Positives = 32/92 (34%)

Query: 12  SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDA 71
                L  L + A    + SQA   Y  A +L   N   Y   A   +   ++ + I   
Sbjct: 150 ICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYY 209

Query: 72  SKAIEIDPRYPKGYYRRGAAYLAMGKFKEALK 103
            ++I +   +P        A     + ++ +K
Sbjct: 210 CRSIAVKFPFPAASTNLQKALSKALESRDEVK 241

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 9e-05
 Identities = 7/74 (9%), Positives = 21/74 (28%), Gaps = 7/74 (9%)

Query: 67  AIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126
           + Q   +A  +              + +    ++    +Q++              K+ E
Sbjct: 5   SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALD----KKVE 57

Query: 127 KAVKKLKFEEAIAV 140
           + +    F+  I  
Sbjct: 58  QDLWNHAFKNQITT 71

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.7 bits (133), Expect = 3e-09
 Identities = 21/135 (15%), Positives = 42/135 (31%), Gaps = 14/135 (10%)

Query: 4   METENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAV-------YYANRAF 56
              + S     +     A+      +Y +A D+YS+ I+ +  N +       Y+  +  
Sbjct: 148 YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGL 207

Query: 57  AHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA-------MGKFKEALKDFQQVK 109
                 +  +A +   +    DP +           L          +  E  K+F    
Sbjct: 208 CQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267

Query: 110 KLSPNDPDAAQKVKE 124
           +L         K+KE
Sbjct: 268 RLDKWKITILNKIKE 282

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.0 bits (100), Expect = 4e-05
 Identities = 14/115 (12%), Positives = 30/115 (26%), Gaps = 12/115 (10%)

Query: 37  YSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA----- 91
           +    +  + +   +   A       +Y  A    SK I+         +          
Sbjct: 147 WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206

Query: 92  --YLAMGKFKEALKDFQQVKKLSPNDPDA-----AQKVKECEKAVKKLKFEEAIA 139
              LA      A +  Q+ +   PN  D+      + + +        +  E   
Sbjct: 207 LCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCK 261

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (131), Expect = 5e-09
 Identities = 14/122 (11%), Positives = 39/122 (31%), Gaps = 1/122 (0%)

Query: 5   ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEY 64
           E EN      +  +       +      A+ L+  A++ + ++   +        + E+ 
Sbjct: 11  EEENPLRDHPQPFE-EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE 69

Query: 65  GSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE 124
             AI    + +E+ P           ++      ++A +  +   + +P         +E
Sbjct: 70  LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEE 129

Query: 125 CE 126
             
Sbjct: 130 GA 131

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 4e-06
 Identities = 19/139 (13%), Positives = 52/139 (37%), Gaps = 3/139 (2%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP 79
           L      + +Y +A+D ++ A+ +   + + +           +   A+    +A+E+ P
Sbjct: 178 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 237

Query: 80  RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIA 139
            Y +  Y  G + + +G  +EA++ F +   +            E     + +     +A
Sbjct: 238 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRG---EGGAMSENIWSTLRLA 294

Query: 140 VPESERHSVADSIDYQSIE 158
           +    +     + D + + 
Sbjct: 295 LSMLGQSDAYGAADARDLS 313

>d1nnwa_ d.159.1.5 (A:) Hypothetical protein PF1291 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 251

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Phosphoesterase-related
domain: Hypothetical protein PF1291
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 52.4 bits (124), Expect = 2e-08
 Identities = 13/84 (15%), Positives = 22/84 (26%), Gaps = 6/84 (7%)

Query: 226 VCGDVHGQFYDLLNIFELNGLPSEENP----YLFNGDFVDRGSFSVEVILTLFAFKCMCP 281
           V  ++ G    L           EE      Y   G+ V    +  EVI  +        
Sbjct: 5   VLANIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPYPKEVIEVIKDLTKKEN 64

Query: 282 SAIYLSRGNHESKSMNKIYGFEGE 305
             + + RG ++             
Sbjct: 65  --VKIIRGKYDQIIAMSDPHATDP 86

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 50.6 bits (119), Expect = 9e-08
 Identities = 11/100 (11%), Positives = 30/100 (30%)

Query: 19  ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID 78
            LA +    K+  + +  + +  +                ++         DA+    + 
Sbjct: 146 YLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLA 205

Query: 79  PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
               +  +  G  YL++G    A   F+     + ++   
Sbjct: 206 EHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 245

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 45.2 bits (105), Expect = 6e-06
 Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 4/68 (5%)

Query: 55  AFAHTKLEEYGSAIQDASKAIEI----DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKK 110
           A       +    +    + +      D    +  Y RG  Y ++G    A  DF Q   
Sbjct: 6   AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 65

Query: 111 LSPNDPDA 118
           + P+ P+ 
Sbjct: 66  IRPDMPEV 73

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 42.9 bits (99), Expect = 3e-05
 Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 4/101 (3%)

Query: 18  KALANEAFRAKKYSQAIDLYSQAIE----LNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73
           + LA       +    +    Q +      + + A     R   +  L     A  D S+
Sbjct: 3   EVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQ 62

Query: 74  AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114
           A+ I P  P+ +   G      G F  A + F  V +L P 
Sbjct: 63  ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 103

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 26/126 (20%), Positives = 50/126 (39%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDAS 72
           RA+ L             + A + +SQA+ +       +       T+   + +A +   
Sbjct: 36  RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD 95

Query: 73  KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132
             +E+DP Y   +  RG A    G+ K A  D     +  PNDP  +  +   E+ + + 
Sbjct: 96  SVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEK 155

Query: 133 KFEEAI 138
           + +E +
Sbjct: 156 QAKEVL 161

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 39.8 bits (91), Expect = 4e-04
 Identities = 6/70 (8%), Positives = 16/70 (22%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87
               +     +    L    +         +  L +  SA      A+  +      +  
Sbjct: 189 TLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRY 248

Query: 88  RGAAYLAMGK 97
                  +G+
Sbjct: 249 ALLELSLLGQ 258

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 48.6 bits (114), Expect = 2e-07
 Identities = 26/145 (17%), Positives = 49/145 (33%), Gaps = 23/145 (15%)

Query: 10  SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELN------------SQNAVYYANRAFA 57
            V  A    + A     A +Y +A     +A+E++              +A  +A  A A
Sbjct: 5   EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEA 64

Query: 58  HTKLEEYGSAIQDASKAIEIDPRYPKG-----------YYRRGAAYLAMGKFKEALKDFQ 106
              L  +  A+  A KA+    R  +             Y R  A   +G+  EA+ +F+
Sbjct: 65  LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFK 124

Query: 107 QVKKLSPNDPDAAQKVKECEKAVKK 131
           +V ++           +   +    
Sbjct: 125 KVVEMIEERKGETPGKERMMEVAID 149

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 2e-07
 Identities = 15/105 (14%), Positives = 34/105 (32%), Gaps = 15/105 (14%)

Query: 41  IELNSQNAVYYANRAFAHTKLEEYGSAI-------QDASKAIEIDPRYPKGYYRRGAAYL 93
           + L+S + V Y +R        E+            +    I    ++   Y    A   
Sbjct: 2   VSLDSPSYVLYRDR-------AEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQ 54

Query: 94  AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAI 138
              + + A K  +   +L+  +       +   K+++K    E +
Sbjct: 55  RDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK-DLHEEM 98

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (112), Expect = 1e-06
 Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 1/79 (1%)

Query: 40  AIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGK-F 98
            I  + +    Y        + E    A +    AIE++      ++ R     ++ K  
Sbjct: 35  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 94

Query: 99  KEALKDFQQVKKLSPNDPD 117
            E +     + +  P +  
Sbjct: 95  HEEMNYITAIIEEQPKNYQ 113

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 2e-06
 Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 1/90 (1%)

Query: 28  KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE-YGSAIQDASKAIEIDPRYPKGYY 86
           ++  +A  L   AIELN+ N   +  R      L++     +   +  IE  P+  + ++
Sbjct: 57  ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH 116

Query: 87  RRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116
            R      +    + L+    +      + 
Sbjct: 117 HRRVLVEWLRDPSQELEFIADILNQDAKNY 146

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 10/124 (8%), Positives = 40/124 (32%), Gaps = 3/124 (2%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP 79
                   +  SQ ++  +  +  +++N   + +R +   + + + + +Q   + ++ D 
Sbjct: 118 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV 177

Query: 80  RYPKGYYRRGAAYLAMGK---FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEE 136
           R    + +R                 ++ Q   ++    P         +  ++     +
Sbjct: 178 RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSK 237

Query: 137 AIAV 140
              +
Sbjct: 238 YPNL 241

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 49.9 bits (117), Expect = 3e-07
 Identities = 23/145 (15%), Positives = 42/145 (28%), Gaps = 11/145 (7%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----AVYYANRAFAHTKLEEYGSAI 68
            +   K            + A +      +    N       + N A A   L E+  A 
Sbjct: 212 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAE 271

Query: 69  QDASKAIEI------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKV 122
               +  E            +        Y   G+  +A +      KL+      +  V
Sbjct: 272 IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFV 331

Query: 123 KECEKAVKKLK-FEEAIAVPESERH 146
            E E   ++L+   +   +PE E+H
Sbjct: 332 IEGEAMAQQLRQLIQLNTLPELEQH 356

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 46.1 bits (107), Expect = 4e-06
 Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 5/84 (5%)

Query: 39  QAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP-----KGYYRRGAAYL 93
           + I  ++ +A + A RA           A + A  A+E  P              G    
Sbjct: 3   KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 62

Query: 94  AMGKFKEALKDFQQVKKLSPNDPD 117
             G+   +L   QQ ++++     
Sbjct: 63  CKGELTRSLALMQQTEQMARQHDV 86

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 44.5 bits (103), Expect = 1e-05
 Identities = 14/117 (11%), Positives = 31/117 (26%), Gaps = 11/117 (9%)

Query: 13  RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-----AVYYANRAFAHTKLEEYGSA 67
            AE     A  A       +A  L   A+E           V  +          E   +
Sbjct: 11  HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRS 70

Query: 68  IQDASKAIEIDPRYP------KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118
           +    +  ++  ++           ++     A G  + A +  ++  +L       
Sbjct: 71  LALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE 127

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.1 bits (113), Expect = 1e-06
 Identities = 8/74 (10%), Positives = 19/74 (25%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP 79
              ++   +   ++     +    N    +       A   L      +Q  S    +DP
Sbjct: 248 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 307

Query: 80  RYPKGYYRRGAAYL 93
                     + +L
Sbjct: 308 MRAAYLDDLRSKFL 321

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 17/160 (10%), Positives = 47/160 (29%), Gaps = 19/160 (11%)

Query: 13  RAEELKALANEAFRAKK----YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGS-- 66
           + +  ++     F+ ++        ++L SQ +  N   A  +  R      LE   S  
Sbjct: 24  KLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPE 83

Query: 67  --------AIQDASKAIEIDPRYPKGYYRRGAAYLAMGK--FKEALKDFQQVKKLSPNDP 116
                    +      + ++P+    ++ R      + +  +   L+   +  +    D 
Sbjct: 84  ESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA---DE 140

Query: 117 DAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQS 156
                         +     A  +  ++     +  +Y S
Sbjct: 141 RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS 180

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 3e-06
 Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 7/91 (7%)

Query: 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVY-------YANRAFAHTKLEEYGS 66
          AE+   L   A+    Y        QA+    +  +            ++A  +  +   
Sbjct: 5  AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDK 64

Query: 67 AIQDASKAIEIDPRYPKGYYRRGAAYLAMGK 97
          A+    K +E+DP + +           M K
Sbjct: 65 ALLLTKKLLELDPEHQRANGNLKYFEYIMAK 95

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 12/80 (15%), Positives = 26/80 (32%), Gaps = 2/80 (2%)

Query: 20  LANEAFRAKKYSQAIDLYSQAIEL--NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77
                       + I L  + +      +   Y    A  + +L+EY  A++     ++ 
Sbjct: 42  CLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 101

Query: 78  DPRYPKGYYRRGAAYLAMGK 97
           +P+  +          AM K
Sbjct: 102 EPQNNQAKELERLIDKAMKK 121

>d1su1a_ d.159.1.7 (A:) Phosphodiesterase yfcE {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: YfcE-like
domain: Phosphodiesterase yfcE
species: Escherichia coli [TaxId: 562]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 5/71 (7%)

Query: 226 VCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVE----VILTLFAFKCMCP 281
              D+HG       + EL      +   +  GD ++ G  +          +        
Sbjct: 6   FASDIHGSLPATERVLELFAQSGAQW-LVILGDVLNHGPRNALPEGYAPAKVVERLNEVA 64

Query: 282 SAIYLSRGNHE 292
             +   RGN +
Sbjct: 65  HKVIAVRGNCD 75

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

 Score = 37.2 bits (84), Expect = 0.002
 Identities = 8/38 (21%), Positives = 20/38 (52%)

Query: 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYY 51
           +EL  L  ++++ K ++QA   + +A +L   +  + 
Sbjct: 2  PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFN 39

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	429
d1s95a_	324	Serine/threonine protein phosphatase 5, PP5 {Human	100.0
d1jk7a_	294	Protein phosphatase-1 (PP-1) {Human (Homo sapiens)	100.0
d3c5wc1	288	Protein phosphatase 2A catalytic subunit alpha iso	100.0
d1auia_	473	Protein phosphatase-2B (PP-2B, calcineurin A subun	100.0
d1g5ba_	219	lambda ser/thr protein phosphatase {Bacteriophage	99.88
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.83
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.8
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.72
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.71
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.71
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.7
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.7
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.66
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.66
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.66
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.65
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.64
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.62
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.62
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.61
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.61
d1nnwa_	251	Hypothetical protein PF1291 {Archaeon Pyrococcus f	99.59
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.58
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.56
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.56
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.52
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.47
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.46
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.43
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.43
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.4
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.39
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.34
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.33
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.3
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.25
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.25
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.17
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.15
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.15
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.11
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.1
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.09
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.09
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.04
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.04
d1uf3a_	228	Hypothetical protein TT1561 {Thermus thermophilus	98.99
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.97
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.89
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.88
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.83
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.82
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.81
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.64
d1su1a_	184	Phosphodiesterase yfcE {Escherichia coli [TaxId: 5	98.64
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.5
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.43
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.43
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.38
d1s3la_	165	Putative phosphodiesterase MJ0936 {Methanococcus j	98.35
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.3
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.12
d3ck2a1	173	Uncharacterized protein SP1879 {Streptococcus pneu	98.04
d2a22a1	193	Vacuolar protein sorting 29, VPS29 {Cryptosporidiu	97.99
d1z2wa1	182	Vacuolar protein sorting 29, VPS29 {Mouse (Mus mus	97.96
d2yvta1	257	Uncharacterized protein Aq_1956 {Aquifex aeolicus	97.9
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.72
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.66
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.62
d1xm7a_	188	Hypothetical protein aq_1666 {Aquifex aeolicus [Ta	97.22
d3d03a1	271	Glycerophosphodiesterase GpdQ {Enterobacter aeroge	96.96
d1ii7a_	333	Mre11 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.76
d2hy1a1	256	Rv0805 cyclic nucleotide phosphodiesterase {Mycoba	96.45
d2nxfa1	320	Uncharacterized C17orf48 homolog zgc:64213 {Zebraf	95.45
d2qfra2	312	Plant purple acid phosphatase, catalytic domain {K	94.52
d1utea_	302	Mammalian purple acid phosphatase {Pig (Sus scrofa	91.99

>d1s95a_ d.159.1.3 (A:) Serine/threonine protein phosphatase 5, PP5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Protein serine/threonine phosphatase
domain: Serine/threonine protein phosphatase 5, PP5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-74  Score=527.58  Aligned_cols=267  Identities=60%  Similarity=1.065  Sum_probs=255.3

Q ss_pred             CCCCcccCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHH
Q 014212          163 YSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFE  242 (429)
Q Consensus       163 ~~~~~~~~~~l~~~~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~  242 (429)
                      |.++++....++.+.++.+++.++....++.+++.+++.+++++|+++|+++++......++.||||+||++.||.++|+
T Consensus         1 ~~gp~~~~~~~t~~~~~~li~~~~~~~~l~~~~~~~ll~~~~~il~~e~~l~~i~~~~~~pv~VvGDiHGq~~DL~~if~   80 (324)
T d1s95a_           1 YSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQFYDLLNIFE   80 (324)
T ss_dssp             CCSSCCBTTBCCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHTSCSEEEECCCTTCEEEEECCCTTCHHHHHHHHH
T ss_pred             CCCCcCCCCCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCCeEEeecCCCCCEEEEEECCCCHHHHHHHHH
Confidence            45777776669999999999999999999999999999999999999999999987666789999999999999999999


Q ss_pred             HcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccchHHHHHHHHHh
Q 014212          243 LNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVF  322 (429)
Q Consensus       243 ~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (429)
                      ..|+|+.+.+|+|||||||||++|+||+.+|++||+.+|++|++||||||++.++..|||.+|+..+|+.++|+.++++|
T Consensus        81 ~~g~p~~~~~ylFLGDYVDRG~~slEvi~lL~~lKi~yP~~v~LLRGNHE~~~~n~~ygF~~e~~~k~~~~l~~~~~~~F  160 (324)
T d1s95a_          81 LNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVF  160 (324)
T ss_dssp             HHCCCBTTBCEEEESCCSSSSTTHHHHHHHHHHHHHHSTTTEEEECCTTSSHHHHHHHSHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HCCCCCCCCeEEEecccccCcCcceeehHHHHHHHHhCCCcEEeccCCccccccccccccchHhhhhcCHHHHHHHHHHH
Confidence            99999887779999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCcccceecCeEEEEecCccCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCCCcEEE---------
Q 014212          323 CCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF---------  393 (429)
Q Consensus       323 ~~lp~~~~~~~~~~~vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~~~~~~~~~~~~~~~---------  393 (429)
                      ++||+||+|++++||||||||++...++++|++++|+.+++++++++|+|||||....++.++.||.|+.|         
T Consensus       161 ~~LPlaa~I~~~ilcvHGGi~~~~~~~l~~i~~i~r~~~~~~~~~~~dlLWSDP~~~~~~~~~~Rg~g~~FG~~~~~~Fl  240 (324)
T d1s95a_         161 EWLPLAQCINGKVLIMHGGLFSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFL  240 (324)
T ss_dssp             TTSCSEEEETTTEEECSSCCCSSSCCCHHHHHTCCCSSSCCSSSHHHHHHHCEECSSSSEEECTTSSSEEECHHHHHHHH
T ss_pred             hhcchhhhccCcEEEecCCcCccccCCHHHHHhccCCCCCcchhhhhhhhccCccccCCcCcCCCCCcCCcCHHHHHHHH
Confidence            99999999999999999999667789999999999999999999999999999998888999999999999         


Q ss_pred             -------EEeeccccccCceeecCCeEEEEcCCCCCCCcCCCC
Q 014212          394 -------VVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQVTKL  429 (429)
Q Consensus       394 -------iir~h~~~~~g~~~~~~~~~~t~fs~~~y~~~~~n~  429 (429)
                             ||||||++++||++.++++||||||||||||.++|+
T Consensus       241 ~~n~l~lIIR~He~v~~G~~~~~~~kviTvFSa~nY~~~~~N~  283 (324)
T d1s95a_         241 EENNLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNK  283 (324)
T ss_dssp             HHHTCCEEEECCSCCTTSEEEEGGGTEEEECCCSSGGGTSCCC
T ss_pred             HHcCCcEEEEcCccccCceEEecCCcEEEEeCCCccCCCCCcc
Confidence                   999999999999999999999999999999999985

>d1jk7a_ d.159.1.3 (A:) Protein phosphatase-1 (PP-1) {Human (Homo sapiens), beta isoform [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Protein serine/threonine phosphatase
domain: Protein phosphatase-1 (PP-1)
species: Human (Homo sapiens), beta isoform [TaxId: 9606]

Probab=100.00  E-value=2e-70  Score=500.21  Aligned_cols=234  Identities=42%  Similarity=0.859  Sum_probs=225.8

Q ss_pred             CCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHH
Q 014212          190 CLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEV  269 (429)
Q Consensus       190 ~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~  269 (429)
                      .++++++..+|.+++++|+++|+++++..|    ++|+||+||++.||.++|+..|+|+.. +|+|||||||||++|+||
T Consensus        24 ~l~~~~i~~l~~~a~~i~~~e~~ll~i~~p----v~VvGDiHG~~~DL~~if~~~g~p~~~-~ylFLGDYVDRG~~slE~   98 (294)
T d1jk7a_          24 QLQENEIRGLCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPES-NYLFLGDYVDRGKQSLET   98 (294)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSCSEEEECSS----EEEECBCTTCHHHHHHHHHHHCCTTSS-CEEECSCCSSSSSCHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCCEEEecCC----eEEEEECCCChHhHHHHHhhcCCCccc-eEEeeccccCCCccchHH
Confidence            478999999999999999999999999887    999999999999999999999998765 599999999999999999


Q ss_pred             HHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccchHHHHHHHHHhccCcccceecCeEEEEecCccCCCCCC
Q 014212          270 ILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVK  349 (429)
Q Consensus       270 ~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~vH~gi~~~~~~~  349 (429)
                      +.+|++||+.+|++|++||||||.+.++..|||.+|+.++|+.++|+.++++|++||+||+|++++||||||| +|...+
T Consensus        99 i~lL~aLKi~~P~~v~lLRGNHE~~~~~~~~gF~~e~~~~y~~~i~~~~~~~F~~LPlaalI~~~i~cvHGGi-~~~~~~  177 (294)
T d1jk7a_          99 ICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGL-SPDLQS  177 (294)
T ss_dssp             HHHHHHHHHHSTTTEEECCCTTSSHHHHTTSSHHHHHHHHSCHHHHHHHHHHHTTCCCEEEETTTEEEESSCC-CTTCCC
T ss_pred             HHHHHHHHhhCCCeEEEecCCcccccccccccchhHHHhhcCHHHHHHHHHHHhhCceeeEEcCeEEEecCcc-cCCccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999 889999


Q ss_pred             ccccccccCCCCCCCCCcccccccCCCCCC-CCCCCCCCCCcEEE----------------EEeeccccccCceeecCCe
Q 014212          350 LSDIKTIDRFCEPPEEGLMCELLWSDPQPL-PGRGPSKRGVGLSF----------------VVRSHEVKDEGYEIEHDGK  412 (429)
Q Consensus       350 ~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~-~~~~~~~~~~~~~~----------------iir~h~~~~~g~~~~~~~~  412 (429)
                      +++|+.+.||.+++.+++++|+|||||... .++.+++||.|+.|                ||||||++++||++.++++
T Consensus       178 l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~~RG~g~~fg~~~~~~Fl~~n~l~~IIR~He~~~~G~~~~~~~~  257 (294)
T d1jk7a_         178 MEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVLGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQ  257 (294)
T ss_dssp             HHHHHTCCSSCCCCSSSHHHHHHHCEECSSCSSEEECTTSSSEEECHHHHHHHHHHTTCSEEEECCSCCTTSEEEETTTT
T ss_pred             hhhhhhccCCCCCCCcchhhhhhhcCCccccCCCCCCCCCCccccCHHHHHHHHHHCCCCEEEEcCccccCCcEEecCCc
Confidence            999999999999999999999999999875 57889999999998                9999999999999999999


Q ss_pred             EEEEcCCCCCCCcCCCC
Q 014212          413 LITVFSAPNYCDQVTKL  429 (429)
Q Consensus       413 ~~t~fs~~~y~~~~~n~  429 (429)
                      ||||||||||||.++|+
T Consensus       258 viTiFSa~nY~~~~~N~  274 (294)
T d1jk7a_         258 LVTLFSAPNYCGEFDNA  274 (294)
T ss_dssp             EEEEBCCTTGGGTCCCC
T ss_pred             EEEEecCCCcCCCCCcc
Confidence            99999999999998885

>d3c5wc1 d.159.1.3 (C:6-293) Protein phosphatase 2A catalytic subunit alpha isoform, PP2A-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Protein serine/threonine phosphatase
domain: Protein phosphatase 2A catalytic subunit alpha isoform, PP2A-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-70  Score=498.95  Aligned_cols=248  Identities=39%  Similarity=0.723  Sum_probs=238.7

Q ss_pred             HHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEE
Q 014212          176 DFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLF  255 (429)
Q Consensus       176 ~~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~  255 (429)
                      .+++++++.+++.+.++++++..+|++++++|+++|+++++..|    +.|+||+||++.||.++|+..++|+.. +|+|
T Consensus         3 ~~~d~~i~~~~~~~~l~~~~i~~L~~~a~~il~~e~~l~~i~~p----v~VvGDlHG~~~DL~~if~~~g~p~~~-~ylF   77 (288)
T d3c5wc1           3 KELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCP----VTVCGDVHGQFHDLMELFRIGGKSPDT-NYLF   77 (288)
T ss_dssp             HHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTSCSEEEECSS----EEEECBCTTCHHHHHHHHHHHCCTTTS-CEEE
T ss_pred             hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCEEEeCCC----eEEEeeCCCCHHHHHHHHHhcCCCccc-eEEe
Confidence            56899999999999999999999999999999999999999876    999999999999999999999987755 6999


Q ss_pred             ccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccc-hHHHHHHHHHhccCcccceecCe
Q 014212          256 NGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLS-ETFVELFAEVFCCLPLAHVLNQK  334 (429)
Q Consensus       256 lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~lp~~~~~~~~  334 (429)
                      ||||||||++|+||+.+|++||+.+|++|++||||||.+.++..|||..|+.++|+ +.+|+.++++|+.||+||+|+++
T Consensus        78 LGDYVDRG~~slEvl~lL~alKi~~P~~v~lLRGNHE~~~~~~~~gF~~E~~~ky~~~~i~~~~~~~F~~LPlaaiI~~~  157 (288)
T d3c5wc1          78 MGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQ  157 (288)
T ss_dssp             CSCCCCSSSSHHHHHHHHHHHHHHCTTTEEECCCTTSSHHHHHHHSHHHHHHHHHSSSHHHHHHHHHHTTSCSEEEETTT
T ss_pred             cCcccCCCCcceeHHHHHHHHHhhCCCeEEEeccCCcccccccccCcchhhhhhcCcHHHHHHHHHHHhhccceEEecCe
Confidence            99999999999999999999999999999999999999999999999999999997 57999999999999999999999


Q ss_pred             EEEEecCccCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCCCcEEE----------------EEeec
Q 014212          335 VFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSF----------------VVRSH  398 (429)
Q Consensus       335 ~~~vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~~~~~~~~~~~~~~~----------------iir~h  398 (429)
                      +||||||| ++...++++|+.++|+.+.+++++++|+|||||....++.+++||.|+.|                |||||
T Consensus       158 i~cvHGGi-~~~~~~~~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~rg~g~~fg~~~~~~Fl~~n~l~~IIR~H  236 (288)
T d3c5wc1         158 IFCLHGGL-SPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAH  236 (288)
T ss_dssp             EEEESSCC-CTTCSSHHHHHHSCCSSSCCSSSHHHHHHHCEECSSSSEEECTTSSSEEECHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEecccc-cCCccchhhHhhcccccCCCccccccccccCCcccCCCCccCCCCCeeecCHHHHHHHHHHCCCcEEEcCC
Confidence            99999999 88999999999999999999999999999999998899999999999998                99999


Q ss_pred             cccccCceeecCCeEEEEcCCCCCCCcCCCC
Q 014212          399 EVKDEGYEIEHDGKLITVFSAPNYCDQVTKL  429 (429)
Q Consensus       399 ~~~~~g~~~~~~~~~~t~fs~~~y~~~~~n~  429 (429)
                      |++++||++.++++|+|||||||||+.++|+
T Consensus       237 e~~~~G~~~~~~~kviTiFSa~~Y~~~~~N~  267 (288)
T d3c5wc1         237 QLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQ  267 (288)
T ss_dssp             SCCTTSEEEEGGGTEEEEBCCTTGGGTSCCC
T ss_pred             CcCCCCCeecCCCcEEEEecCCCccCCCCcc
Confidence            9999999999999999999999999998885

>d1auia_ d.159.1.3 (A:) Protein phosphatase-2B (PP-2B, calcineurin A subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Protein serine/threonine phosphatase
domain: Protein phosphatase-2B (PP-2B, calcineurin A subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-68  Score=509.38  Aligned_cols=246  Identities=42%  Similarity=0.800  Sum_probs=233.8

Q ss_pred             HHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCCeeeecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEcc
Q 014212          178 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG  257 (429)
Q Consensus       178 l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~~~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lG  257 (429)
                      ++-+.+++.+..+++++++..++.++.++|+++|+++++..|    ++||||+||++.||.++|+..|+|+.. +|+|||
T Consensus        30 ~~~l~~hf~~egrl~~~~~l~li~~a~~il~~Epnll~i~~P----v~VvGDIHGq~~DLl~If~~~G~P~~~-~yLFLG  104 (473)
T d1auia_          30 VDILKAHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAP----VTVCGDIHGQFFDLMKLFEVGGSPANT-RYLFLG  104 (473)
T ss_dssp             HHHHHHHHHTTCCBCHHHHHHHHHHHHHHHHTSCSEEEECSS----EEEECCCTTCHHHHHHHHHHHCCTTTC-CEEECS
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCCeEEeCCC----EEEEEeCCCCHHHHHHHHHHcCCCCcc-eEEecC
Confidence            566889999999999999999999999999999999999877    999999999999999999999988765 599999


Q ss_pred             ccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchhhccchhhhhcccchHHHHHHHHHhccCcccceecCeEEE
Q 014212          258 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFV  337 (429)
Q Consensus       258 D~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~  337 (429)
                      ||||||++|+||+.+|++||+.+|++|++||||||++.++..|||..||..+|+.++|+.++++|++||+||+|+++|||
T Consensus       105 DYVDRG~~SlEvlllL~aLKi~yP~~V~LLRGNHE~~~~n~~ygF~~E~~~ky~~~iy~~~~~~F~~LPLAAiI~~kifc  184 (473)
T d1auia_         105 DYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLC  184 (473)
T ss_dssp             CCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSSHHHHHHSSHHHHHHHHSCHHHHHHHHHHHTTSCCEEEETTTEEE
T ss_pred             ccccCCcccHHHHHHHHHHHHhCCCeEEEeCCCCccHhhhcccccHHHHHHhhcHHHHHHHHHHhccchhhhhhcCcEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCccCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCC--------CCCCCCCCcEEE----------------
Q 014212          338 VHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPG--------RGPSKRGVGLSF----------------  393 (429)
Q Consensus       338 vH~gi~~~~~~~~~~i~~~~r~~~~~~~~~~~~~lw~dp~~~~~--------~~~~~~~~~~~~----------------  393 (429)
                      ||||| ||...++++|+.+.|+.+++..++++|+|||||....+        +.++.||.|+.|                
T Consensus       185 VHGGI-sp~l~~l~dI~~I~R~~e~p~~~~~~DLLWSDP~~~~~~~~~~~~~~~ns~RG~g~~FG~~a~~~FL~~n~L~~  263 (473)
T d1auia_         185 VHGGL-SPEINTLDDIRKLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLS  263 (473)
T ss_dssp             ESSCC-CTTCCSHHHHHHSCCSSSCCSSSHHHHHHHCEECTTTTSCSSCCCEEECTTTTSSEEECHHHHHHHHHHTTCSE
T ss_pred             eeccC-CCccCchhhhhhcccccCCCCcCceeeeeccCCcccccccccccccccCCCCCCEEEEChHHHHHHHHHcCCcE
Confidence            99999 89999999999999999999999999999999986432        235789999998                


Q ss_pred             EEeeccccccCceeecCCe------EEEEcCCCCCCCcCCCC
Q 014212          394 VVRSHEVKDEGYEIEHDGK------LITVFSAPNYCDQVTKL  429 (429)
Q Consensus       394 iir~h~~~~~g~~~~~~~~------~~t~fs~~~y~~~~~n~  429 (429)
                      ||||||++++||++.++++      |||||||||||+.++|+
T Consensus       264 IIR~HE~~~~Gy~~~~~~~~~~~~~viTVFSApnYc~~~nN~  305 (473)
T d1auia_         264 ILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNK  305 (473)
T ss_dssp             EEECCSCCTTSEEECCBCTTTSSBSEEEECCCSSGGGTSCCC
T ss_pred             EEEcCcchhhhhhhhcCCccCCCCCEEEEcCCCCcCCCcCCe
Confidence            9999999999999999987      99999999999999996

>d1g5ba_ d.159.1.3 (A:) lambda ser/thr protein phosphatase {Bacteriophage lambda [TaxId: 10710]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Protein serine/threonine phosphatase
domain: lambda ser/thr protein phosphatase
species: Bacteriophage lambda [TaxId: 10710]

Probab=99.88  E-value=1.2e-23  Score=186.46  Aligned_cols=171  Identities=21%  Similarity=0.233  Sum_probs=118.2

Q ss_pred             eecCCCCCceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccc
Q 014212          215 DIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK  294 (429)
Q Consensus       215 ~~~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~  294 (429)
                      .+.....++++|||||||+++.|.++|+..++++..+++|||||+|||||+|.+|+.++.      +.++++|+||||.+
T Consensus         6 ~~d~~~~~rI~vIgDIHG~~~~L~~lL~~i~~~~~~d~lv~lGD~vDrGp~s~~vl~~l~------~~~~~~i~GNHE~~   79 (219)
T d1g5ba_           6 KIDGSKYRNIWVVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECLELIT------FPWFRAVRGNHEQM   79 (219)
T ss_dssp             EEEGGGCSCEEEECCCTTCHHHHHHHHHHHTCCTTTCEEEECSCCSSSSSCHHHHHGGGG------STTEEECCCHHHHH
T ss_pred             ccCCCCCCeEEEEEecccCHHHHHHHHHHcCCCCCCCEEEEeCCccccCccHHHHHHHhh------ccccccccCcHHHH
Confidence            344444567999999999999999999999987777889999999999999999998873      46789999999999


Q ss_pred             cchhhccchh---------hhhccc---chHHHHHHHHHhccCccccee---cCeEEEEecCccCCCCCCccccccccCC
Q 014212          295 SMNKIYGFEG---------EVRSKL---SETFVELFAEVFCCLPLAHVL---NQKVFVVHGGLFSVDGVKLSDIKTIDRF  359 (429)
Q Consensus       295 ~~~~~~~~~~---------~~~~~~---~~~~~~~~~~~~~~lp~~~~~---~~~~~~vH~gi~~~~~~~~~~i~~~~r~  359 (429)
                      ++....+...         .+....   ...+...+.+++..+|....+   +.+++++|||++.....           
T Consensus        80 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~h~~~~~~~~~-----------  148 (219)
T d1g5ba_          80 MIDGLSERGNVNHWLLNGGGWFFNLDYDKEILAKALAHKADELPLIIELVSKDKKYVICHADYPFDEYE-----------  148 (219)
T ss_dssp             HHHHHSTTCCCHHHHTTTGGGGGGSCHHHHHHHHHHHHHHTTCCSEEEEEETTEEEEECSSCCCSSBCC-----------
T ss_pred             HHHHHhccccccHHHHcCchHHhhcccchhHHHHHHHHHHHhCccccccccCCCcEEEEECCCchhhhc-----------
Confidence            8876544321         111111   123556778999999988655   46899999998432111           


Q ss_pred             CCCCCCCcccccccCCCCCC---CCCCCCCCCCcEEEEEeeccccccCce
Q 014212          360 CEPPEEGLMCELLWSDPQPL---PGRGPSKRGVGLSFVVRSHEVKDEGYE  406 (429)
Q Consensus       360 ~~~~~~~~~~~~lw~dp~~~---~~~~~~~~~~~~~~iir~h~~~~~g~~  406 (429)
                        ........+++|+++.-.   .++.+..  .+...||.||+++.....
T Consensus       149 --~~~~~~~~~~lw~r~~~~~~~~~~~~~~--~~~~~vV~GHt~~~~~~~  194 (219)
T d1g5ba_         149 --FGKPVDHQQVIWNRERISNSQNGIVKEI--KGADTFIFGHTPAVKPLK  194 (219)
T ss_dssp             --TTCCCCHHHHHHCCHHHHHHHTTCCCCC--BTSSEEEECSSCCSSCEE
T ss_pred             --cccccchhhhcccccccccccccccccc--CCCCEEEECCcCCCCcEE
Confidence              011112346789875211   1112222  223348999999877654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=8.6e-20  Score=152.81  Aligned_cols=134  Identities=53%  Similarity=0.853  Sum_probs=126.1

Q ss_pred             CcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 014212            7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY   86 (429)
Q Consensus         7 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   86 (429)
                      +..+.+.++.+...|+.+++.|+|++|+..|+++++++|+++.+|.++|.+++.+|++++|+.+|+++++++|+++.+|+
T Consensus         3 ~~~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~   82 (159)
T d1a17a_           3 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY   82 (159)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHH
Confidence            34556788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcC
Q 014212           87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAV  140 (429)
Q Consensus        87 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  140 (429)
                      .+|.++..+|++++|+.+|++++.++|+++.++..++.+...++...+++|+..
T Consensus        83 ~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          83 RRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999988887777777777664

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=8.6e-19  Score=138.65  Aligned_cols=114  Identities=32%  Similarity=0.548  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   92 (429)
                      .+..+...|+.++..|+|++|+..|+++++.+|+++.+|.++|.++..+|++++|+..+++++.++|+++.+|+++|.++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~   81 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   81 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014212           93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE  126 (429)
Q Consensus        93 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~  126 (429)
                      ..+|++++|+.+|+++++++|+++.++..++.+.
T Consensus        82 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          82 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            9999999999999999999999999998888764

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=9.7e-18  Score=145.11  Aligned_cols=105  Identities=32%  Similarity=0.479  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   92 (429)
                      .++.+...|+.+++.|+|++|+..|++|++++|+++.+|.++|.||..+|++++|+.+|++|++++|+++.+|+++|.+|
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHH
Q 014212           93 LAMGKFKEALKDFQQVKKLSPNDPD  117 (429)
Q Consensus        93 ~~~g~~~eA~~~~~~al~~~p~~~~  117 (429)
                      ..+|++++|+..|++|++++|++..
T Consensus        83 ~~l~~~~~A~~~~~~al~l~p~~~~  107 (201)
T d2c2la1          83 LEMESYDEAIANLQRAYSLAKEQRL  107 (201)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccHH
Confidence            9999999999999999999886544

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=2.7e-16  Score=141.31  Aligned_cols=125  Identities=20%  Similarity=0.171  Sum_probs=118.0

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   87 (429)
                      ..++..+.+++.+|.+|...|++++|+..|+++++++|+++.+|+++|.++..+|++++|+.+|+++++++|+++.++++
T Consensus        31 ~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  110 (259)
T d1xnfa_          31 LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN  110 (259)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Q 014212           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL  132 (429)
Q Consensus        88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  132 (429)
                      +|.++..+|++++|+..|+++++.+|++......++.+....+..
T Consensus       111 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~  155 (259)
T d1xnfa_         111 RGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEK  155 (259)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhH
Confidence            999999999999999999999999999999888888777666654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.71  E-value=2.5e-16  Score=130.47  Aligned_cols=124  Identities=27%  Similarity=0.398  Sum_probs=113.0

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHhhCHHHHHHHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----------------AVYYANRAFAHTKLEEYGSAIQDA   71 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----------------~~~~~~lg~~~~~~g~~~~A~~~~   71 (429)
                      ++..+.+..+...|+.+++.|+|.+|+..|++|++..+..                ..++.++|.||+++|++++|+.++
T Consensus        11 ~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~   90 (153)
T d2fbna1          11 EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA   90 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhh
Confidence            3456677889999999999999999999999999875542                246789999999999999999999


Q ss_pred             HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212           72 SKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (429)
Q Consensus        72 ~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  131 (429)
                      +++++++|++..+|+++|.+|..+|++++|+.+|+++++++|+++.+...+..+...+.+
T Consensus        91 ~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~  150 (153)
T d2fbna1          91 SKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE  150 (153)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             hccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988777654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5.9e-16  Score=130.53  Aligned_cols=123  Identities=30%  Similarity=0.475  Sum_probs=113.4

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---------------AVYYANRAFAHTKLEEYGSAIQDASKA   74 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~a   74 (429)
                      ..+.+..+...|+.+++.|+|++|+..|+++++..|..               ..++.++|.||+++|++++|+..++++
T Consensus         9 k~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~a   88 (170)
T d1p5qa1           9 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA   88 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhh
Confidence            34567888999999999999999999999999987753               356788999999999999999999999


Q ss_pred             HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Q 014212           75 IEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL  132 (429)
Q Consensus        75 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  132 (429)
                      +.++|+++.+++++|.+|..+|++++|+.+|+++++++|+++.+...++.+...+...
T Consensus        89 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  146 (170)
T d1p5qa1          89 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ  146 (170)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHH
T ss_pred             hhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988777654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=8.2e-17  Score=149.88  Aligned_cols=180  Identities=14%  Similarity=0.119  Sum_probs=147.8

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-EYGSAIQDASKAIEIDPRYPKGYYRR   88 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l   88 (429)
                      +|+.++++..+|.++.+.+.+++|++.+++|++++|++..+|+++|.++..++ ++++|+..++++++++|++..+|+++
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~  118 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR  118 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            78899999999999999999999999999999999999999999999999987 59999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCCcc
Q 014212           89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARI  168 (429)
Q Consensus        89 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~  168 (429)
                      |.++..+|++++|++.+.++++++|++..++..++.++..+++  +++|+..+.            ++++++|.+..+..
T Consensus       119 ~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~--~~~Al~~~~------------~al~~~p~n~~a~~  184 (315)
T d2h6fa1         119 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL--WDNELQYVD------------QLLKEDVRNNSVWN  184 (315)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--CTTHHHHHH------------HHHHHCTTCHHHHH
T ss_pred             hHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHh--hHHHHHHHH------------HHHHHCCccHHHHH
Confidence            9999999999999999999999999999999999999988886  455555544            89999998765543


Q ss_pred             cCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhhCCCe
Q 014212          169 EGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSL  213 (429)
Q Consensus       169 ~~~~l~~~~l~~li~~l~~~~~l~~~~~~~ll~~a~~~l~~~p~~  213 (429)
                      ..+        .+...  .............+....+.+...|..
T Consensus       185 ~r~--------~~l~~--~~~~~~~~~~~~ai~~~~~al~~~P~~  219 (315)
T d2h6fa1         185 QRY--------FVISN--TTGYNDRAVLEREVQYTLEMIKLVPHN  219 (315)
T ss_dssp             HHH--------HHHHH--TTCSCSHHHHHHHHHHHHHHHHHSTTC
T ss_pred             HHH--------HHHHH--ccccchhhhhHHhHHHHHHHHHhCCCc
Confidence            221        11111  112223334445555555666666654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=5.2e-16  Score=122.95  Aligned_cols=113  Identities=12%  Similarity=0.127  Sum_probs=103.4

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---hhCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHH
Q 014212           18 KALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK---LEEYGSAIQDASKAIEIDPRY--PKGYYRRGAAY   92 (429)
Q Consensus        18 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~   92 (429)
                      -.+++.+...+++++|.+.|+++++++|+++.+++++|.++..   .+++++|+..+++++..+|.+  ..+++++|.+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            4678899999999999999999999999999999999999986   556778999999999998765  45899999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014212           93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK  130 (429)
Q Consensus        93 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~  130 (429)
                      ..+|++++|+.+|+++++++|++..+...+..+...+.
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~  120 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK  120 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999988876654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.66  E-value=2e-15  Score=126.93  Aligned_cols=125  Identities=30%  Similarity=0.450  Sum_probs=113.7

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHhhCHHHHHHHHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ---------------NAVYYANRAFAHTKLEEYGSAIQDAS   72 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~   72 (429)
                      .+..+.+..+...|+.+++.|+|.+|+..|++|+...|.               ...++.++|.||..+|++++|+.+++
T Consensus         9 ~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~   88 (168)
T d1kt1a1           9 KEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCD   88 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhh
Confidence            345577899999999999999999999999999976443               23567899999999999999999999


Q ss_pred             HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Q 014212           73 KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL  132 (429)
Q Consensus        73 ~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  132 (429)
                      +++.++|.+..+++++|.++..+|++++|+.+|+++++++|+++.+...++.+...++..
T Consensus        89 ~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  148 (168)
T d1kt1a1          89 KALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEH  148 (168)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Confidence            999999999999999999999999999999999999999999999999999988777653

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.66  E-value=1.2e-15  Score=128.44  Aligned_cols=123  Identities=21%  Similarity=0.443  Sum_probs=112.4

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhhCHHHHHHHHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL----------------NSQNAVYYANRAFAHTKLEEYGSAIQDASK   73 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~   73 (429)
                      ....+..+...|+.++..|+|++|+..|+++++.                +|....++.++|.++.++|++++|+..|++
T Consensus        23 ~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~  102 (169)
T d1ihga1          23 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE  102 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhh
Confidence            3445567788999999999999999999999863                466778899999999999999999999999


Q ss_pred             HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Q 014212           74 AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL  132 (429)
Q Consensus        74 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  132 (429)
                      |++++|+++.+|+++|.+|..+|++++|+..|+++++++|+++.+...+..+...+...
T Consensus       103 al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~  161 (169)
T d1ihga1         103 ALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ  161 (169)
T ss_dssp             HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988777653

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1e-15  Score=131.77  Aligned_cols=125  Identities=18%  Similarity=0.193  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   92 (429)
                      ++..+++.|..++..|+|++|++.|.+   +.|.++.+|+++|.++..+|++++|+++|++|++++|+++.+|+++|.++
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~   80 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY   80 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence            455778899999999999999999986   46778999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           93 LAMGKFKEALKDFQQVKKLSPND----------------PDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        93 ~~~g~~~eA~~~~~~al~~~p~~----------------~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      ..+|++++|+..|++|+...+.+                .+++++++.++..+++  +++|+..++
T Consensus        81 ~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~--~~~A~~~l~  144 (192)
T d1hh8a_          81 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE--WKKAEEQLA  144 (192)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence            99999999999999999876644                3677888998888887  677766555

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.7e-15  Score=120.08  Aligned_cols=115  Identities=29%  Similarity=0.454  Sum_probs=102.5

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh-------HH
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP-------KG   84 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~   84 (429)
                      ..+..+..+|+.++..|+|++|+.+|+++++++|+++.++.++|.+|.++|+|++|+..++++++++|.++       .+
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~   81 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            35778899999999999999999999999999999999999999999999999999999999999998775       46


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014212           85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK  127 (429)
Q Consensus        85 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~  127 (429)
                      +..+|.++..++++++|+.+|++++..+|+ ++....+..+..
T Consensus        82 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k  123 (128)
T d1elra_          82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEK  123 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHH
Confidence            777888899999999999999999999875 566655555443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=6.2e-16  Score=143.86  Aligned_cols=150  Identities=8%  Similarity=0.027  Sum_probs=130.3

Q ss_pred             cccHhHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 014212            8 NSSVSRAEELKALANEAFRAK-KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY   86 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   86 (429)
                      ..+|+...+|..+|.++...| ++++|+..++++++.+|++..+|.++|.++..+|++++|++.++++++++|++..+|.
T Consensus        71 ~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~  150 (315)
T d2h6fa1          71 ELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQ  150 (315)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHH
Confidence            457999999999999999987 5999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCC
Q 014212           87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSG  165 (429)
Q Consensus        87 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~  165 (429)
                      ++|.++..+|++++|+.+|+++++++|++..++.+++.++..++.        ....+...+|...+.++++++|.+..
T Consensus       151 ~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~--------~~~~~~~~~ai~~~~~al~~~P~~~~  221 (315)
T d2h6fa1         151 HRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG--------YNDRAVLEREVQYTLEMIKLVPHNES  221 (315)
T ss_dssp             HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------SCSHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccc--------cchhhhhHHhHHHHHHHHHhCCCchH
Confidence            999999999999999999999999999999999999988765443        11222233344444477888887543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.62  E-value=2.3e-15  Score=117.48  Aligned_cols=96  Identities=11%  Similarity=0.054  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 014212           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL   93 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   93 (429)
                      ....+.+|..++++|++++|+..|+++++.+|+++.+|..+|.++...|++++|+.+|+++++++|+++.+|+.+|.+|.
T Consensus        16 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~   95 (112)
T d1hxia_          16 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   95 (112)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHH
Confidence            34568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHH
Q 014212           94 AMGKFKEALKDFQQVK  109 (429)
Q Consensus        94 ~~g~~~eA~~~~~~al  109 (429)
                      .+|++++|++++++.+
T Consensus        96 ~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          96 NEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHh
Confidence            9999999999999976

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.2e-14  Score=134.76  Aligned_cols=66  Identities=15%  Similarity=0.061  Sum_probs=40.5

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKA   74 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   74 (429)
                      .+|..+.++..+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|++.++++
T Consensus        48 ~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~  113 (323)
T d1fcha_          48 QDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDW  113 (323)
T ss_dssp             SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchhhH
Confidence            456666666777777777777777777777766666666655555555555555555444444443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2e-15  Score=142.19  Aligned_cols=142  Identities=20%  Similarity=0.222  Sum_probs=113.8

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   89 (429)
                      .+..+..+..+|..+...|++++|+..|+++++++|+++.++..+|.++...|++++|++.+++++...|.+...+..+|
T Consensus       233 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  312 (388)
T d1w3ba_         233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA  312 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHH
Confidence            45556677778888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCC
Q 014212           90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSG  165 (429)
Q Consensus        90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~  165 (429)
                      .++..+|++++|+..|+++++++|+++.++..+|.++...|+  +++|+..++            ++++++|++..
T Consensus       313 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~------------~al~l~P~~~~  374 (388)
T d1w3ba_         313 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK--LQEALMHYK------------EAIRISPTFAD  374 (388)
T ss_dssp             HHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTC--CHHHHHHHH------------HHHTTCTTCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH------------HHHHhCCCCHH
Confidence            888888888888888888888888888888888888777766  556655555            88888887643

>d1nnwa_ d.159.1.5 (A:) Hypothetical protein PF1291 {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Phosphoesterase-related
domain: Hypothetical protein PF1291
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.59  E-value=1.4e-15  Score=136.25  Aligned_cols=118  Identities=18%  Similarity=0.084  Sum_probs=86.2

Q ss_pred             ceEEEccCCCCHHHHHHHHHHcC----CCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccchh
Q 014212          223 HFTVCGDVHGQFYDLLNIFELNG----LPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNK  298 (429)
Q Consensus       223 ~~~v~GDihG~~~~l~~~l~~~~----~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~~  298 (429)
                      ++.++||+||++..|.++|+...    .....+.+||+||+|||||+|.||+.+|.+|+..  ..+++|+||||.+....
T Consensus         2 ~I~visDiHg~~~~l~~~l~~i~~~~~~~~~~D~ii~~GDlvd~G~~~~evi~~l~~l~~~--~~v~~v~GNHD~~~~~~   79 (251)
T d1nnwa_           2 YVAVLANIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPYPKEVIEVIKDLTKK--ENVKIIRGKYDQIIAMS   79 (251)
T ss_dssp             EEEEEECCTTCHHHHHHHHHHHHHHHHTTCCEEEEEEESCSSSSSSCHHHHHHHHHHHHHH--SCEEEECCHHHHHHHHS
T ss_pred             EEEEEEccccCHHHHHHHHHHHHHhhccCCCCcEEEEecCcCCCCCCcHHHHHHHHHHhhc--CCEEEEeccHHHHHHhc
Confidence            38999999999999999987652    1223357999999999999999999999998653  46888999999887654


Q ss_pred             hccchhhhhccc--------------chHHHHHHHHHhccCccccee---cCeEEEEecCc
Q 014212          299 IYGFEGEVRSKL--------------SETFVELFAEVFCCLPLAHVL---NQKVFVVHGGL  342 (429)
Q Consensus       299 ~~~~~~~~~~~~--------------~~~~~~~~~~~~~~lp~~~~~---~~~~~~vH~gi  342 (429)
                      ..++........              ...+.....+++..+|.....   +.+++++||++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~H~~p  140 (251)
T d1nnwa_          80 DPHATDPGYIDKLELPGHVKKALKFTWEKLGHEGREYLRDLPIYLVDKIGGNEVFGVYGSP  140 (251)
T ss_dssp             CTTCSSSGGGGGSSCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCEEEEETTEEEEEESSCS
T ss_pred             cccccccchhhhhccchhHHHhhHHHhhhcCHHHHHHHHhcccceEEeeCCCcEEEEecCc
Confidence            433221111110              123444567889999987543   45899999976

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.58  E-value=1.1e-14  Score=119.18  Aligned_cols=110  Identities=21%  Similarity=0.183  Sum_probs=99.3

Q ss_pred             HHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----------hCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 014212           22 NEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL----------EEYGSAIQDASKAIEIDPRYPKGYYRRGAA   91 (429)
Q Consensus        22 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~   91 (429)
                      ..+-+.+.|++|+..|+++++++|+++.+++++|.++..+          +.+++|+..|++|++++|+++.+|+++|.+
T Consensus         5 ~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~   84 (145)
T d1zu2a1           5 TEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA   84 (145)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHH
Confidence            3456778899999999999999999999999999999865          456899999999999999999999999999


Q ss_pred             HHHcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014212           92 YLAMGK-----------FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK  131 (429)
Q Consensus        92 ~~~~g~-----------~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  131 (429)
                      |..+|+           +++|+++|++|++++|++..++..++.+....+.
T Consensus        85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~  135 (145)
T d1zu2a1          85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQL  135 (145)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHH
T ss_pred             HHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHH
Confidence            998764           6899999999999999999999999988766654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=7.6e-14  Score=129.19  Aligned_cols=101  Identities=10%  Similarity=0.131  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   92 (429)
                      +....+.+|..++..|++++|+..|+++++.+|+++.+|..+|.++..+|++++|+.+|.++++++|+++.+|..+|.+|
T Consensus        18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~   97 (323)
T d1fcha_          18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF   97 (323)
T ss_dssp             TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccc
Confidence            44456789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCC
Q 014212           93 LAMGKFKEALKDFQQVKKLSP  113 (429)
Q Consensus        93 ~~~g~~~eA~~~~~~al~~~p  113 (429)
                      ..+|++++|+..+++++...|
T Consensus        98 ~~~~~~~~A~~~~~~~~~~~~  118 (323)
T d1fcha_          98 TNESLQRQACEILRDWLRYTP  118 (323)
T ss_dssp             HHTTCHHHHHHHHHHHHHTST
T ss_pred             cccccccccccchhhHHHhcc
Confidence            999999888887777665544

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=4.9e-15  Score=139.43  Aligned_cols=152  Identities=18%  Similarity=0.169  Sum_probs=103.6

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   89 (429)
                      .|..+.++..+|..+...|++++|...++++++.+|+++.++..+|.++...|++++|+..+++++..+|..+..+..+|
T Consensus       165 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  244 (388)
T d1w3ba_         165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA  244 (388)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHH
Confidence            45556667777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhc----------------------CCcccccc
Q 014212           90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIA----------------------VPESERHS  147 (429)
Q Consensus        90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~----------------------~~~~~~~~  147 (429)
                      .++...|++++|+..|+++++++|+++.++..++.++...++  +.+|+.                      +...++..
T Consensus       245 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  322 (388)
T d1w3ba_         245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS--VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIE  322 (388)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHH
Confidence            777777777777777777777777777777777776666665  333332                      22334555


Q ss_pred             ccccccccccccCCCC
Q 014212          148 VADSIDYQSIEVEPQY  163 (429)
Q Consensus       148 ~a~~~~~~~l~~~~~~  163 (429)
                      +|...+.++++++|+.
T Consensus       323 ~A~~~~~~al~~~p~~  338 (388)
T d1w3ba_         323 EAVRLYRKALEVFPEF  338 (388)
T ss_dssp             HHHHHHHHHTTSCTTC
T ss_pred             HHHHHHHHHHHhCCCC
Confidence            6666666888887765

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=9.5e-14  Score=119.13  Aligned_cols=106  Identities=16%  Similarity=0.156  Sum_probs=98.0

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC----------
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY----------   81 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----------   81 (429)
                      ..+.+++++|.+++..|++++|++.|++|++++|+++.+|+++|.++.++|++++|+..|++|+...+.+          
T Consensus        34 ~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~  113 (192)
T d1hh8a_          34 PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL  113 (192)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTB
T ss_pred             CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhh
Confidence            3467899999999999999999999999999999999999999999999999999999999999876543          


Q ss_pred             ------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014212           82 ------PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD  117 (429)
Q Consensus        82 ------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~  117 (429)
                            .++++++|.++..+|++++|++.+++|+++.|+...
T Consensus       114 ~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~  155 (192)
T d1hh8a_         114 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH  155 (192)
T ss_dssp             CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred             hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcch
Confidence                  367899999999999999999999999999988543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=1.4e-13  Score=123.08  Aligned_cols=122  Identities=18%  Similarity=0.114  Sum_probs=108.2

Q ss_pred             cCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 014212           28 KKYSQAIDLYSQAIELNS----QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALK  103 (429)
Q Consensus        28 g~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~  103 (429)
                      .+.+.|+..+++++...+    ..+.+++.+|.+|..+|++++|+..|+++++++|+++.+|+++|.+|..+|++++|+.
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~   92 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhh
Confidence            356778888888887533    3567999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCC
Q 014212          104 DFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY  163 (429)
Q Consensus       104 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~  163 (429)
                      .|+++++++|+++.++..+|.++..+++  +++|+..++            ++++.+|..
T Consensus        93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~--~~~A~~~~~------------~al~~~p~~  138 (259)
T d1xnfa_          93 AFDSVLELDPTYNYAHLNRGIALYYGGR--DKLAQDDLL------------AFYQDDPND  138 (259)
T ss_dssp             HHHHHHHHCTTCTHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCTTC
T ss_pred             hhhHHHHHHhhhhhhHHHHHHHHHHHhh--HHHHHHHHH------------HHHhhcccc
Confidence            9999999999999999999999988887  777877777            677776653

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.5e-13  Score=107.91  Aligned_cols=99  Identities=23%  Similarity=0.297  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014212           51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK  130 (429)
Q Consensus        51 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~  130 (429)
                      +...|..++..|++++|+..|+++++.+|+++.+|..+|.+|..+|++++|+..|.++++++|+++.+++.+|.++..++
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhcCCccccccccccccccccccCCCC
Q 014212          131 KLKFEEAIAVPESERHSVADSIDYQSIEVEPQY  163 (429)
Q Consensus       131 ~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~  163 (429)
                      +  +++|+..++            ++++.+|..
T Consensus        86 ~--~~~A~~~~~------------~a~~~~p~~  104 (117)
T d1elwa_          86 R--FEEAKRTYE------------EGLKHEANN  104 (117)
T ss_dssp             C--HHHHHHHHH------------HHHTTCTTC
T ss_pred             C--HHHHHHHHH------------HHHHhCCCC
Confidence            8  788888877            778777764

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=1.4e-13  Score=118.36  Aligned_cols=105  Identities=20%  Similarity=0.221  Sum_probs=96.2

Q ss_pred             CHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014212           47 NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE  126 (429)
Q Consensus        47 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~  126 (429)
                      ++..+...|..+++.|+|++|+..|++|+.++|.++.+|+++|.+|..+|++++|+.+|++|++++|+++.++..+|.++
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            45667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHhhcCCccccccccccccccccccCCCCCC
Q 014212          127 KAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSG  165 (429)
Q Consensus       127 ~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~  165 (429)
                      ..+++  +++|+..++            ++++++|....
T Consensus        83 ~~l~~--~~~A~~~~~------------~al~l~p~~~~  107 (201)
T d2c2la1          83 LEMES--YDEAIANLQ------------RAYSLAKEQRL  107 (201)
T ss_dssp             HHTTC--HHHHHHHHH------------HHHHHHHHTTC
T ss_pred             HHCCC--HHHHHHHHH------------HHHHhCcccHH
Confidence            99998  788888777            67777765443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.43  E-value=6e-13  Score=103.45  Aligned_cols=91  Identities=13%  Similarity=0.115  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014212           50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV  129 (429)
Q Consensus        50 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~  129 (429)
                      .++.+|.++++.|++++|+..|++++..+|+++.+|+.+|.++..+|++++|+.+|+++++++|+++.++..++.++...
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHhhcCCc
Q 014212          130 KKLKFEEAIAVPE  142 (429)
Q Consensus       130 ~~~~~~~a~~~~~  142 (429)
                      |+  +++|+..++
T Consensus        98 g~--~~~A~~~l~  108 (112)
T d1hxia_          98 HN--ANAALASLR  108 (112)
T ss_dssp             HH--HHHHHHHHH
T ss_pred             CC--HHHHHHHHH
Confidence            98  788887665

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=6.9e-13  Score=109.94  Aligned_cols=101  Identities=26%  Similarity=0.268  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014212           50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV  129 (429)
Q Consensus        50 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~  129 (429)
                      .+...|..+++.|+|++|+.+|+++++++|+++.+|+++|.++..+|++++|+.+|+++++++|++..++..+|.++..+
T Consensus        12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~   91 (159)
T d1a17a_          12 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL   91 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHc
Confidence            35668999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHhhcCCccccccccccccccccccCCCCC
Q 014212          130 KKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYS  164 (429)
Q Consensus       130 ~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~  164 (429)
                      |+  +++|+..++            +++.++|...
T Consensus        92 g~--~~eA~~~~~------------~a~~~~p~~~  112 (159)
T d1a17a_          92 GK--FRAALRDYE------------TVVKVKPHDK  112 (159)
T ss_dssp             TC--HHHHHHHHH------------HHHHHSTTCH
T ss_pred             CC--HHHHHHHHH------------HHHHcCCCCH
Confidence            98  778887777            7888887653

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.39  E-value=2.8e-13  Score=112.05  Aligned_cols=103  Identities=24%  Similarity=0.273  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC-
Q 014212           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR-   80 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-   80 (429)
                      +..+...|+.++..|+|++|+..|++++++.|+.            +.+|.++|.+|..+|++++|+..+++++.+.|. 
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~   88 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   88 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence            4445555999999999999999999999988764            467899999999999999999999999987542 


Q ss_pred             ----------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 014212           81 ----------YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP  116 (429)
Q Consensus        81 ----------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~  116 (429)
                                ...+++++|.+|..+|++++|+..|++|+++.|+..
T Consensus        89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~  134 (156)
T d2hr2a1          89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  134 (156)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence                      234789999999999999999999999999976543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=5.5e-12  Score=94.69  Aligned_cols=81  Identities=14%  Similarity=-0.025  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014212           49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-------PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK  121 (429)
Q Consensus        49 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~  121 (429)
                      .-++.+|.++++.|+|++|+.+|++|+++.|.+       +.++.++|.++.++|++++|+..|+++++++|+++.++.+
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N   85 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence            344555555555555555555555555554322       3456666666666666666666666666666666666666


Q ss_pred             HHHHHHHH
Q 014212          122 VKECEKAV  129 (429)
Q Consensus       122 l~~~~~~~  129 (429)
                      ++.+...+
T Consensus        86 l~~~~~~l   93 (95)
T d1tjca_          86 LKYFEYIM   93 (95)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            65554443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.8e-12  Score=95.58  Aligned_cols=82  Identities=17%  Similarity=0.142  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHH
Q 014212           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY   86 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   86 (429)
                      ++..+.+|..+++.|+|++|+..|++|+++.|.+       +.++.++|.++.++|++++|+..|+++++++|+++.++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            5678999999999999999999999999986543       678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHc
Q 014212           87 RRGAAYLAM   95 (429)
Q Consensus        87 ~la~~~~~~   95 (429)
                      +++.+...+
T Consensus        85 Nl~~~~~~l   93 (95)
T d1tjca_          85 NLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            998776544

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.1e-12  Score=104.65  Aligned_cols=83  Identities=12%  Similarity=0.215  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014212           49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA  128 (429)
Q Consensus        49 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~  128 (429)
                      ..+.++|.+++..|+|++|+.+|+++++++|+++.+++++|.+|..+|++++|+..++++++++|+++.++..++.++..
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999998888888877777


Q ss_pred             HHh
Q 014212          129 VKK  131 (429)
Q Consensus       129 ~~~  131 (429)
                      +|.
T Consensus        85 lg~   87 (128)
T d1elra_          85 IGN   87 (128)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            766

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.25  E-value=2.6e-11  Score=101.29  Aligned_cols=95  Identities=19%  Similarity=0.158  Sum_probs=87.9

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   87 (429)
                      ..+|..+..+.++|.++.+.|+|++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|++..++..
T Consensus        71 ~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~  150 (169)
T d1ihga1          71 KLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE  150 (169)
T ss_dssp             GGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            34678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHH
Q 014212           88 RGAAYLAMGKFKEAL  102 (429)
Q Consensus        88 la~~~~~~g~~~eA~  102 (429)
                      ++.+........++.
T Consensus       151 l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         151 LLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999988776665543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.25  E-value=4.4e-11  Score=111.11  Aligned_cols=131  Identities=12%  Similarity=0.060  Sum_probs=113.1

Q ss_pred             ccHhHHHHHHHHHHHHHH----------hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC--HHHHHHHHHHHHH
Q 014212            9 SSVSRAEELKALANEAFR----------AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE--YGSAIQDASKAIE   76 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~----------~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~   76 (429)
                      .+|+...+|..++..+..          .|++++|+..++++++.+|++..+|..+|.++...++  +++|+..++++++
T Consensus        58 ~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~  137 (334)
T d1dcea1          58 ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE  137 (334)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             HCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHh
Confidence            467777777666665544          4558999999999999999999999999999988775  8999999999999


Q ss_pred             hCCCChHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCC
Q 014212           77 IDPRYPKGY-YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVP  141 (429)
Q Consensus        77 ~~p~~~~~~-~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~  141 (429)
                      .+|.+..++ +.+|.++...+++++|+..++++++.+|++..++..++.++..+++  +++|...+
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~--~~~A~~~~  201 (334)
T d1dcea1         138 ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP--QPDSGPQG  201 (334)
T ss_dssp             HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSC--CCCSSSCC
T ss_pred             hCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC--HHHHHHHH
Confidence            999999986 5678999999999999999999999999999999999999999887  44444444

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.8e-10  Score=96.19  Aligned_cols=90  Identities=20%  Similarity=0.217  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   92 (429)
                      ....+.++|.+|++.|+|++|+..++++++++|+++.+++++|.++..+|++++|+.+|+++++++|+++.+...++.+.
T Consensus        61 ~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  140 (170)
T d1p5qa1          61 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ  140 (170)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34567789999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHcCCHHHHH
Q 014212           93 LAMGKFKEAL  102 (429)
Q Consensus        93 ~~~g~~~eA~  102 (429)
                      ..+++..+..
T Consensus       141 ~~~~~~~~~e  150 (170)
T d1p5qa1         141 QRIRRQLARE  150 (170)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8777665543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.15  E-value=2.2e-10  Score=95.45  Aligned_cols=99  Identities=19%  Similarity=0.223  Sum_probs=86.8

Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 014212           12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA   91 (429)
Q Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~   91 (429)
                      -....+.++|.+|++.|++++|+..++++++++|++..+++++|.++..+|++++|+.+|++++.++|+++.++..++.+
T Consensus        62 ~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~  141 (168)
T d1kt1a1          62 FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMC  141 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             hHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34566778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHH-HHHHHHHHHH
Q 014212           92 YLAMGKFKE-ALKDFQQVKK  110 (429)
Q Consensus        92 ~~~~g~~~e-A~~~~~~al~  110 (429)
                      ....+++.+ ....|.+.++
T Consensus       142 ~~~~~~~~e~~kk~~~~~f~  161 (168)
T d1kt1a1         142 QKKAKEHNERDRRTYANMFK  161 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHh
Confidence            887776643 4444444443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.15  E-value=1.2e-10  Score=95.51  Aligned_cols=84  Identities=17%  Similarity=0.093  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   92 (429)
                      ....+.++|.+|++.|++++|+..++++++++|.+..+|+++|.++..+|++++|+.+|+++++++|++..+...++.+.
T Consensus        66 ~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  145 (153)
T d2fbna1          66 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  145 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34577899999999999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             HHcC
Q 014212           93 LAMG   96 (429)
Q Consensus        93 ~~~g   96 (429)
                      .+++
T Consensus       146 ~kl~  149 (153)
T d2fbna1         146 NKLK  149 (153)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=5.5e-11  Score=116.90  Aligned_cols=120  Identities=10%  Similarity=0.005  Sum_probs=84.9

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR   87 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   87 (429)
                      ..+|+.+.++..+|..+.+.|++++|+..++++++.+|.  .++.++|.++...+++++|+.+|++|++++|+++.+|++
T Consensus       114 ~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~  191 (497)
T d1ya0a1         114 NVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQ  191 (497)
T ss_dssp             -----------------------------CCHHHHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHH
T ss_pred             CCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHH
Confidence            346777888899999999999999999999999887764  678899999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014212           88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV  129 (429)
Q Consensus        88 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~  129 (429)
                      ||.++...|++.+|+.+|.+|+..+|.++.++.+++.++...
T Consensus       192 Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         192 LAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999876443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.10  E-value=1.5e-10  Score=93.89  Aligned_cols=93  Identities=15%  Similarity=0.063  Sum_probs=81.2

Q ss_pred             cccHhHHHHHHHHHHHHHHh----------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhC-----------HHH
Q 014212            8 NSSVSRAEELKALANEAFRA----------KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE-----------YGS   66 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-----------~~~   66 (429)
                      ..+|+++.++..+|.++...          +.+++|+..|++|++++|+++.+|+++|.+|..+|+           +++
T Consensus        25 ~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~  104 (145)
T d1zu2a1          25 KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDL  104 (145)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             hhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHH
Confidence            45899999999999999854          556899999999999999999999999999988764           789


Q ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH
Q 014212           67 AIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKE  100 (429)
Q Consensus        67 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e  100 (429)
                      |+++|++|++++|++..++..|+.+....+.+.+
T Consensus       105 A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e  138 (145)
T d1zu2a1         105 ATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAE  138 (145)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHH
T ss_pred             hhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988755444444

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.09  E-value=1.5e-10  Score=105.42  Aligned_cols=130  Identities=13%  Similarity=0.078  Sum_probs=108.9

Q ss_pred             HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---
Q 014212           11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELN------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---   81 (429)
Q Consensus        11 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---   81 (429)
                      ++.++.+...|+.|...++|++|++.|.+|+++.      +..+.++.++|.||.++|++++|+.++++++.+.+..   
T Consensus        34 ~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~  113 (290)
T d1qqea_          34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF  113 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccc
Confidence            4557789999999999999999999999999873      2335789999999999999999999999999987654   


Q ss_pred             ---hHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           82 ---PKGYYRRGAAYLA-MGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        82 ---~~~~~~la~~~~~-~g~~~eA~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                         ..++..+|.+|.. .|++++|++.|++|+++.+..      ..++..++.++..+++  +++|+..++
T Consensus       114 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~--y~~A~~~~~  182 (290)
T d1qqea_         114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ--YIEASDIYS  182 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcCh--HHHHHHHHH
Confidence               5678899988865 699999999999999875432      3457778888888877  778887776

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.09  E-value=8.3e-10  Score=100.32  Aligned_cols=144  Identities=15%  Similarity=0.101  Sum_probs=108.3

Q ss_pred             ccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH-hhCHHHHHHHHHHHHHhCCC-
Q 014212            9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTK-LEEYGSAIQDASKAIEIDPR-   80 (429)
Q Consensus         9 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~-   80 (429)
                      ..+..+..+..+|.+|...|++++|++.|++++++.+..      ..++.++|.++.. .|++++|+..|++|+.+.+. 
T Consensus        72 ~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~  151 (290)
T d1qqea_          72 NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD  151 (290)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            456677899999999999999999999999999986554      6778899988865 69999999999999987543 


Q ss_pred             -----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHHHhHHHHHhhcCCccccccc
Q 014212           81 -----YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD-------AAQKVKECEKAVKKLKFEEAIAVPESERHSV  148 (429)
Q Consensus        81 -----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~-------~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~  148 (429)
                           ...++.++|.++..+|++++|+..|++++...+..+.       .+...+.++...++  +..|...++      
T Consensus       152 ~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d--~~~A~~~~~------  223 (290)
T d1qqea_         152 QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD--AVAAARTLQ------  223 (290)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC--HHHHHHHHH------
T ss_pred             CchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhcc--HHHHHHHHH------
Confidence                 2456899999999999999999999999999887753       33444444444444  444544444      


Q ss_pred             cccccccccccCCCCCCC
Q 014212          149 ADSIDYQSIEVEPQYSGA  166 (429)
Q Consensus       149 a~~~~~~~l~~~~~~~~~  166 (429)
                            ++.+++|.+...
T Consensus       224 ------~~~~~~~~~~~s  235 (290)
T d1qqea_         224 ------EGQSEDPNFADS  235 (290)
T ss_dssp             ------GGGCC-------
T ss_pred             ------HHHHhCCCccch
Confidence                  667777766543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.04  E-value=1.8e-09  Score=90.66  Aligned_cols=103  Identities=17%  Similarity=0.110  Sum_probs=93.9

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHhhCHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----------------------AVYYANRAFAHTKLEEYG   65 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~lg~~~~~~g~~~   65 (429)
                      .-+....+.+...|..+...|++++|++.|.+|+.+.+..                      ..++.+++.++..+|+++
T Consensus         5 ~~D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~   84 (179)
T d2ff4a2           5 TCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRAS   84 (179)
T ss_dssp             GBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             hccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch
Confidence            3456677899999999999999999999999999986643                      256889999999999999


Q ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014212           66 SAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKK  110 (429)
Q Consensus        66 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~  110 (429)
                      +|+.++++++.++|.+..+|..++.++..+|++.+|+..|+++.+
T Consensus        85 ~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          85 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999844

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.2e-10  Score=91.34  Aligned_cols=101  Identities=9%  Similarity=0.063  Sum_probs=88.5

Q ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Q 014212           52 ANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMG---KFKEALKDFQQVKKLSPND--PDAAQKVKECE  126 (429)
Q Consensus        52 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~eA~~~~~~al~~~p~~--~~~~~~l~~~~  126 (429)
                      .+++..+...+++++|.+.|++++.++|+++.+++++|.++...+   ++++|+..|+++++.+|.+  .++++++|.++
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            356778889999999999999999999999999999999998755   4567999999999998765  45899999999


Q ss_pred             HHHHhHHHHHhhcCCccccccccccccccccccCCCCCCC
Q 014212          127 KAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA  166 (429)
Q Consensus       127 ~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~  166 (429)
                      ..+|+  +++|+.+++            ++++++|.+..+
T Consensus        83 ~~~g~--~~~A~~~~~------------~aL~~~P~~~~A  108 (122)
T d1nzna_          83 YRLKE--YEKALKYVR------------GLLQTEPQNNQA  108 (122)
T ss_dssp             HHTTC--HHHHHHHHH------------HHHHHCTTCHHH
T ss_pred             HHHhh--hHHHHHHHH------------HHHHhCcCCHHH
Confidence            99998  788888888            899999987554

>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: TT1561-like
domain: Hypothetical protein TT1561
species: Thermus thermophilus [TaxId: 274]

Probab=98.99  E-value=2e-10  Score=100.18  Aligned_cols=74  Identities=8%  Similarity=0.067  Sum_probs=61.0

Q ss_pred             CceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccccch
Q 014212          222 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMN  297 (429)
Q Consensus       222 ~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~~~  297 (429)
                      ..+.++||+||+++.|.++++..... ..+.+|++||++++|+.+.++..++..|+... ..++.++||||.+...
T Consensus         6 ~~i~~~sd~hg~~eale~~~~~~~~~-~~D~vv~~GDl~~~~~~~~~~~~~~~~L~~~~-~pv~~i~GNHD~~~~~   79 (228)
T d1uf3a_           6 RYILATSNPMGDLEALEKFVKLAPDT-GADAIALIGNLMPKAAKSRDYAAFFRILSEAH-LPTAYVPGPQDAPIWE   79 (228)
T ss_dssp             CEEEEEECCTTCHHHHHHHHTHHHHH-TCSEEEEESCSSCTTCCHHHHHHHHHHHGGGC-SCEEEECCTTSCSHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHhhc-CCCEEEECCCCCCCCccchHHHHhhhhhcccc-ceEEEEecCCCchhhh
Confidence            45889999999999999999865433 23569999999999999999999998888654 4588899999976543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.97  E-value=4.2e-09  Score=97.37  Aligned_cols=127  Identities=13%  Similarity=0.090  Sum_probs=102.6

Q ss_pred             HhcC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh----------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 014212           26 RAKK-YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE----------EYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA   94 (429)
Q Consensus        26 ~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   94 (429)
                      ..++ .++|++.++++++.+|++..+|..++.++..++          ++++|+.+++++++.+|+++.+|+.+|.++..
T Consensus        40 ~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~  119 (334)
T d1dcea1          40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR  119 (334)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             hcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHH
Confidence            3443 489999999999999999999988887766554          48899999999999999999999999999988


Q ss_pred             cCC--HHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCC
Q 014212           95 MGK--FKEALKDFQQVKKLSPNDPDAAQ-KVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA  166 (429)
Q Consensus        95 ~g~--~~eA~~~~~~al~~~p~~~~~~~-~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~  166 (429)
                      .++  +++|+..++++++.+|.+..++. ..+.++...+.  +++|+..++            ++++.+|.+..+
T Consensus       120 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~--~~~Al~~~~------------~~i~~~p~~~~a  180 (334)
T d1dcea1         120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVA--PAEELAFTD------------SLITRNFSNYSS  180 (334)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCC--HHHHHHHHH------------TTTTTTCCCHHH
T ss_pred             hccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccc--cHHHHHHHH------------HHHHcCCCCHHH
Confidence            875  89999999999999999988864 55566655555  556665555            666666654433

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=3.9e-10  Score=110.64  Aligned_cols=119  Identities=8%  Similarity=-0.001  Sum_probs=77.1

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH
Q 014212           20 LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFK   99 (429)
Q Consensus        20 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~   99 (429)
                      ++......+.|+.|+..|.++++++|++...+.++|.++...|++++|+..+++++..+|  ..++.++|.++...|+++
T Consensus        92 ~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~  169 (497)
T d1ya0a1          92 SLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTS  169 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHH
Confidence            355556678889999999999999999999999999999999999999999999998876  478999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212          100 EALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus       100 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      +|+.+|++|++++|++..++.++|.++...++  ..+|+..+.
T Consensus       170 ~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~--~~~A~~~y~  210 (497)
T d1ya0a1         170 QAESYYRHAAQLVPSNGQPYNQLAILASSKGD--HLTTIFYYC  210 (497)
T ss_dssp             HHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            99999999999999999999999999988887  566666666

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.88  E-value=3.8e-10  Score=100.91  Aligned_cols=120  Identities=14%  Similarity=0.106  Sum_probs=98.6

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH
Q 014212           21 ANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKE  100 (429)
Q Consensus        21 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e  100 (429)
                      +..+++.|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++++|++..++..++.++...+..++
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence            46678899999999999999999999999999999999999999999999999999999999999999999988887777


Q ss_pred             HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212          101 ALKDFQQVKKL-SPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus       101 A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      +...+.+.... .|.....+...+.+....++  .++|...++
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd--~~~A~~~~~  123 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQD--YEQVSELAL  123 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCC--HHHHHHHHH
Confidence            66655443333 34445555666666666665  667766655

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.83  E-value=1e-09  Score=90.04  Aligned_cols=104  Identities=18%  Similarity=0.125  Sum_probs=83.7

Q ss_pred             HHHHHH--HHHHHHhhCHHHHHHHHHHHHHhCCCCh------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 014212           49 VYYANR--AFAHTKLEEYGSAIQDASKAIEIDPRYP------------KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN  114 (429)
Q Consensus        49 ~~~~~l--g~~~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~  114 (429)
                      .++..+  |..++..|+|++|+..|++|+++.|+.+            .+|.++|.+|..+|++++|+..+++++++.|.
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            344444  7888899999999999999999988653            57899999999999999999999999987542


Q ss_pred             -----------CHHHHHHHHHHHHHHHhHHHHHhhcCCccccccccccccccccccCCCCCCC
Q 014212          115 -----------DPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA  166 (429)
Q Consensus       115 -----------~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~l~~~~~~~~~  166 (429)
                                 ...+++++|.++..+|+  +++|+..++            +++++.|...+.
T Consensus        88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~--~eeA~~~~~------------~Al~l~~~~~~~  136 (156)
T d2hr2a1          88 RGELNQDEGKLWISAVYSRALALDGLGR--GAEAMPEFK------------KVVEMIEERKGE  136 (156)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHHHHCCSC
T ss_pred             cccccccccchhHHHHhhhHHHHHHHHH--HHHHHHHHH------------HHHHhhHHhhch
Confidence                       23367888888888887  777777777            777776655443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=2.7e-08  Score=90.79  Aligned_cols=131  Identities=14%  Similarity=0.018  Sum_probs=116.0

Q ss_pred             cHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212           10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA-VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (429)
Q Consensus        10 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   88 (429)
                      .|.....+...+..+..+|++++|...|+++++..|.+. .+|..++....+.++++.|...|++++...|.+...|...
T Consensus        95 ~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~  174 (308)
T d2onda1          95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA  174 (308)
T ss_dssp             TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            456667888999999999999999999999999999874 5789999999999999999999999999999999999999


Q ss_pred             HHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           89 GAAYL-AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        89 a~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      |.... ..|+.+.|...|++++...|+++.++...+......|+  ++.|..+++
T Consensus       175 a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~--~~~aR~~fe  227 (308)
T d2onda1         175 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE--DNNTRVLFE  227 (308)
T ss_dssp             HHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC--HHHHHHHHH
T ss_pred             HHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCC--hHHHHHHHH
Confidence            98654 56899999999999999999999999999888777766  666666666

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=1.2e-08  Score=93.54  Aligned_cols=135  Identities=13%  Similarity=-0.009  Sum_probs=109.2

Q ss_pred             CCcccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC
Q 014212            6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR   80 (429)
Q Consensus         6 ~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   80 (429)
                      ...+++..++.....|.+++..|++++|++.|+++++..|.+     ..++..+|.++..+|++++|+..|++++++.+.
T Consensus         4 ~~~~~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~   83 (366)
T d1hz4a_           4 DIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ   83 (366)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             hccccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence            345566778888889999999999999999999999999986     457889999999999999999999999987654


Q ss_pred             C------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212           81 Y------PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND--------PDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus        81 ~------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~--------~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      .      ..++..++.++...|++.+|...+.+++.+.+..        ..+...++.++...++  ++.+...+.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~a~~~~~  157 (366)
T d1hz4a_          84 HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR--LDEAEASAR  157 (366)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcc--hhhhHHHHH
Confidence            3      3568889999999999999999999999864321        2345566777666665  555555444

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.64  E-value=1.9e-07  Score=71.54  Aligned_cols=84  Identities=10%  Similarity=0.060  Sum_probs=74.1

Q ss_pred             CHHHHHHHHHHHHHh---hCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014212           47 NAVYYANRAFAHTKL---EEYGSAIQDASKAIEIDPRYP-KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKV  122 (429)
Q Consensus        47 ~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l  122 (429)
                      ...+.+++|.++.+.   .+.++|+..++.++..+|.+. +++|.||.+|.++|+|++|..+++++++++|++..+....
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~  113 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  113 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence            378889999999865   567799999999999998764 7999999999999999999999999999999999998888


Q ss_pred             HHHHHHHH
Q 014212          123 KECEKAVK  130 (429)
Q Consensus       123 ~~~~~~~~  130 (429)
                      ..+...+.
T Consensus       114 ~~Ie~~~~  121 (124)
T d2pqrb1         114 SMVEDKIQ  121 (124)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            77765554

>d1su1a_ d.159.1.7 (A:) Phosphodiesterase yfcE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: YfcE-like
domain: Phosphodiesterase yfcE
species: Escherichia coli [TaxId: 562]

Probab=98.64  E-value=3.6e-09  Score=89.15  Aligned_cols=72  Identities=19%  Similarity=0.309  Sum_probs=54.3

Q ss_pred             ceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcH--------HHHHHHHHhhhhCCCeEEEecCCcccc
Q 014212          223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSV--------EVILTLFAFKCMCPSAIYLSRGNHESK  294 (429)
Q Consensus       223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~--------e~~~~l~~lk~~~p~~~~~lrGNhe~~  294 (429)
                      ++.+++|+||++..+.++++..... ..+.+|++||++++|+.+.        +++..+..+    +..++.++||||..
T Consensus         3 ki~iiSDiHg~~~al~~vl~~~~~~-~~D~iv~~GDiv~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~GNhD~~   77 (184)
T d1su1a_           3 KLMFASDIHGSLPATERVLELFAQS-GAQWLVILGDVLNHGPRNALPEGYAPAKVVERLNEV----AHKVIAVRGNCDSE   77 (184)
T ss_dssp             EEEEECCCTTBHHHHHHHHHHHHHH-TCSEEEECSCCSCCCTTSCCCTTBCHHHHHHHHHTT----GGGEEECCCTTCCH
T ss_pred             EEEEEeecCCCHHHHHHHHHHHhhc-CCCEEEEcCcccccCccchhhhccCcHHHHHHHHhc----CCcEEEecCCCCch
Confidence            5899999999999999999876433 2346999999999998643        444444333    45789999999986


Q ss_pred             cchhh
Q 014212          295 SMNKI  299 (429)
Q Consensus       295 ~~~~~  299 (429)
                      .....
T Consensus        78 ~~~~~   82 (184)
T d1su1a_          78 VDQML   82 (184)
T ss_dssp             HHHHH
T ss_pred             hhhhh
Confidence            54433

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.50  E-value=5.8e-07  Score=81.62  Aligned_cols=118  Identities=11%  Similarity=0.002  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 014212           14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHT-KLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY   92 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   92 (429)
                      ...+...+....+.|+++.|...|+++++..|.+...+...|.... ..|+.+.|...|++++...|+++..|...+..+
T Consensus       134 ~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~  213 (308)
T d2onda1         134 TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL  213 (308)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            3467888999999999999999999999999999999999888754 468999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHh
Q 014212           93 LAMGKFKEALKDFQQVKKLSPNDPD----AAQKVKECEKAVKK  131 (429)
Q Consensus        93 ~~~g~~~eA~~~~~~al~~~p~~~~----~~~~l~~~~~~~~~  131 (429)
                      ...|+++.|...|++|+...|.+++    ++..........|+
T Consensus       214 ~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~  256 (308)
T d2onda1         214 SHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD  256 (308)
T ss_dssp             HTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC
T ss_pred             HHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999998876543    55555555555554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.43  E-value=5.2e-07  Score=75.09  Aligned_cols=93  Identities=10%  Similarity=0.021  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh----------------------HHHHHHHHHHHHcCCHHHHHHHH
Q 014212           48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP----------------------KGYYRRGAAYLAMGKFKEALKDF  105 (429)
Q Consensus        48 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----------------------~~~~~la~~~~~~g~~~eA~~~~  105 (429)
                      ...+...|......|++++|++.|.+|+.+.+...                      .++..++.++..+|++++|+..+
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~   90 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL   90 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            45678899999999999999999999999876431                      57899999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHhhcCCc
Q 014212          106 QQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE  142 (429)
Q Consensus       106 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  142 (429)
                      +++++++|.+..++..++.++...|+  ..+|+..|+
T Consensus        91 ~~al~~~P~~e~~~~~l~~al~~~Gr--~~eAl~~y~  125 (179)
T d2ff4a2          91 EALTFEHPYREPLWTQLITAYYLSDR--QSDALGAYR  125 (179)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHTTTC--HHHHHHHHH
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhcC--HHHHHHHHH
Confidence            99999999999999999999999998  788888777

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.43  E-value=7.2e-08  Score=85.74  Aligned_cols=112  Identities=11%  Similarity=-0.044  Sum_probs=97.1

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHH-hCCCChHHHH
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE-IDPRYPKGYY   86 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~   86 (429)
                      ..+|.++.++..+|..+...|++++|++.|+++++++|++..++..++.++...+..+++...+.+... .+|.....+.
T Consensus        24 ~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l  103 (264)
T d1zbpa1          24 KASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSL  103 (264)
T ss_dssp             HTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHH
Confidence            468999999999999999999999999999999999999999999999998888877777665544333 3455667788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 014212           87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA  119 (429)
Q Consensus        87 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~  119 (429)
                      ..+.++...|++++|.+.++++.+..|+.+..+
T Consensus       104 ~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~  136 (264)
T d1zbpa1         104 VSFNLSMVSQDYEQVSELALQIEELRQEKGFLA  136 (264)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence            889999999999999999999999999987543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.38  E-value=6e-07  Score=81.62  Aligned_cols=106  Identities=15%  Similarity=0.007  Sum_probs=91.6

Q ss_pred             cccHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh------
Q 014212            8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----AVYYANRAFAHTKLEEYGSAIQDASKAIEI------   77 (429)
Q Consensus         8 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------   77 (429)
                      ...+.....+...|..+...|++++|...++++++..|.+    ...+.++|.++...|++++|+..+++++..      
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  286 (366)
T d1hz4a_         207 YHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRL  286 (366)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhccc
Confidence            3445667788889999999999999999999999887654    566788999999999999999999999854      


Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 014212           78 DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP  113 (429)
Q Consensus        78 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p  113 (429)
                      .|....++..+|.+|..+|++++|+..+++|+++.+
T Consensus       287 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         287 MSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            345677899999999999999999999999998753

>d1s3la_ d.159.1.7 (A:) Putative phosphodiesterase MJ0936 {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: YfcE-like
domain: Putative phosphodiesterase MJ0936
species: Methanococcus jannaschii [TaxId: 2190]

Probab=98.35  E-value=1.7e-07  Score=77.04  Aligned_cols=63  Identities=19%  Similarity=0.294  Sum_probs=46.9

Q ss_pred             ceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCccccc
Q 014212          223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKS  295 (429)
Q Consensus       223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~  295 (429)
                      ++.+++|+||++..+.++++..... ..+.++++||+++.     +++..+..+    ...++.++||||...
T Consensus         2 kI~iiSDiHgn~~al~~vl~~~~~~-~~D~ii~~GD~~~~-----~~~~~l~~~----~~~~~~v~GN~D~~~   64 (165)
T d1s3la_           2 KIGIMSDTHDHLPNIRKAIEIFNDE-NVETVIHCGDFVSL-----FVIKEFENL----NANIIATYGNNDGER   64 (165)
T ss_dssp             EEEEECCCTTCHHHHHHHHHHHHHS-CCSEEEECSCCCST-----HHHHHGGGC----SSEEEEECCTTCCCH
T ss_pred             EEEEEEeCCCCHHHHHHHHHHHHhc-CCCEEEECCCccCH-----HHHHHHhhc----CccEEEEcccccccc
Confidence            5899999999999999998765322 23569999999964     445444443    346888999999643

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.30  E-value=1.9e-06  Score=65.77  Aligned_cols=80  Identities=9%  Similarity=-0.026  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 014212           14 AEELKALANEAFRAK---KYSQAIDLYSQAIELNSQNA-VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG   89 (429)
Q Consensus        14 ~~~~~~~a~~~~~~g---~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   89 (429)
                      ++..++.|..+.+..   +.++|+..++++++.+|.+. ..++++|.+|+++|+|++|..+++++++++|++..+....-
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            678899999998764   55789999999999999775 79999999999999999999999999999999999877665


Q ss_pred             HHHH
Q 014212           90 AAYL   93 (429)
Q Consensus        90 ~~~~   93 (429)
                      .+..
T Consensus       115 ~Ie~  118 (124)
T d2pqrb1         115 MVED  118 (124)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.12  E-value=2.8e-05  Score=68.18  Aligned_cols=108  Identities=18%  Similarity=0.247  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 014212           13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRYPKGYYRR   88 (429)
Q Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l   88 (429)
                      +|.+++.+|..++.++++++|+++|+++.+.  .+..+++++|.+|..    ..++..|...++++...  .++.+...+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l   76 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLL   76 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhcc
Confidence            3679999999999999999999999999765  688999999999987    67999999999998765  588899999


Q ss_pred             HHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014212           89 GAAYLA----MGKFKEALKDFQQVKKLSPNDPDAAQKVKECE  126 (429)
Q Consensus        89 a~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~  126 (429)
                      |.++..    ..+.+.|...++++....+  ..+...++..+
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~  116 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIY  116 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccc
Confidence            988875    4678999999999988654  45555555443

>d3ck2a1 d.159.1.7 (A:1-173) Uncharacterized protein SP1879 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: YfcE-like
domain: Uncharacterized protein SP1879
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.04  E-value=3.5e-06  Score=69.49  Aligned_cols=58  Identities=19%  Similarity=0.155  Sum_probs=44.9

Q ss_pred             CceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccc
Q 014212          222 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK  294 (429)
Q Consensus       222 ~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~  294 (429)
                      .++.|++|+||++..|.++++....  ..+.++++||++..+....             ...++.++||||..
T Consensus         4 ~kI~viSD~Hgn~~al~~vl~~~~~--~~D~iih~GD~~~~~~~~~-------------~~~~~~V~GN~D~~   61 (173)
T d3ck2a1           4 QTIIVMSDSHGDSLIVEEVRDRYVG--KVDAVFHNGDSELRPDSPL-------------WEGIRVVKGNMDFY   61 (173)
T ss_dssp             EEEEEECCCTTCHHHHHHHHHHHTT--TSSEEEECSCCCSCTTCGG-------------GTTEEECCCTTCCS
T ss_pred             CEEEEEeccCCCHHHHHHHHHHhhc--CCCEEEECCcccCcccchh-------------hcCCeEEecCcccc
Confidence            4689999999999999999986532  3456999999998765431             13578899999953

>d2a22a1 d.159.1.7 (A:4-196) Vacuolar protein sorting 29, VPS29 {Cryptosporidium parvum [TaxId: 5807]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: YfcE-like
domain: Vacuolar protein sorting 29, VPS29
species: Cryptosporidium parvum [TaxId: 5807]

Probab=97.99  E-value=1.3e-06  Score=73.65  Aligned_cols=89  Identities=19%  Similarity=0.287  Sum_probs=58.8

Q ss_pred             CceEEEccCCCCHH------HHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCccccc
Q 014212          222 KHFTVCGDVHGQFY------DLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKS  295 (429)
Q Consensus       222 ~~~~v~GDihG~~~------~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~~  295 (429)
                      .-+.+++|+||...      .+.++++..    .-+.++++||++++     +|+.+|..+.    ..++.++||||...
T Consensus         4 ~lIlviSD~H~~~~~~~l~~~~~~~~~~~----~vD~ii~~GDi~~~-----~~l~~l~~l~----~~v~~V~GN~D~~~   70 (193)
T d2a22a1           4 DLVLLIGDLKIPYGAKELPSNFRELLATD----KINYVLCTGNVCSQ-----EYVEMLKNIT----KNVYIVSGDLDSAI   70 (193)
T ss_dssp             EEEEEECCCCTTTTCSSCCGGGHHHHHCT----TCCEEEECSCCCCH-----HHHHHHHHHC----SCEEECCCTTCCSC
T ss_pred             cEEEEEeCCCCCcccchhhHHHHHHhccC----CCCEEEECCCCCCH-----HHHHHHHhhC----CCEEEEcCCCCcch
Confidence            34889999998543      244555432    23469999999974     8888887774    35888999999754


Q ss_pred             chhhccchhhhhcccchHHHHHHHHHhccCccccee--cC-eEEEEecCc
Q 014212          296 MNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVL--NQ-KVFVVHGGL  342 (429)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~--~~-~~~~vH~gi  342 (429)
                      .....                   ++...+|....+  ++ +++++||-.
T Consensus        71 ~~~~~-------------------~~~~~lp~~~~~~~~~~~i~l~H~~~  101 (193)
T d2a22a1          71 FNPDP-------------------ESNGVFPEYVVVQIGEFKIGLMHGNQ  101 (193)
T ss_dssp             CBCCG-------------------GGTBCCCSEEEEEETTEEEEEECSTT
T ss_pred             hhhhH-------------------HHHhhCCccEEEEECCEEEEEEeccC
Confidence            33211                   233456755433  44 789999755

>d1z2wa1 d.159.1.7 (A:1-182) Vacuolar protein sorting 29, VPS29 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: YfcE-like
domain: Vacuolar protein sorting 29, VPS29
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.96  E-value=5.2e-06  Score=68.96  Aligned_cols=63  Identities=21%  Similarity=0.239  Sum_probs=43.6

Q ss_pred             ceEEEccCCCCHHH--HHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccc
Q 014212          223 HFTVCGDVHGQFYD--LLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK  294 (429)
Q Consensus       223 ~~~v~GDihG~~~~--l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~  294 (429)
                      ++.|++|+||+...  +...+...-....-+.++++||+++     .|++.+|..+.    ..++.++||||..
T Consensus         2 kI~viSD~H~~~~~~~l~~~~~~~~~~~~~D~Ii~~GDi~~-----~e~l~~l~~~~----~~v~~V~GN~D~~   66 (182)
T d1z2wa1           2 LVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCT-----KESYDYLKTLA----GDVHIVRGDFDEN   66 (182)
T ss_dssp             EEEEECCCCBTTTCSSCCHHHHTTCCTTSCSEEEECSCCBS-----HHHHHHHHHHC----SEEEECCCTTCCC
T ss_pred             EEEEEeecCCCCcchhhHHHHHHHhcccCCCEEEEccCccc-----hhhHHHHHhhC----CceEEEeCCcCcc
Confidence            48899999997643  2233333211223456999999985     68888887763    3588899999954

>d2yvta1 d.159.1.6 (A:4-260) Uncharacterized protein Aq_1956 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: TT1561-like
domain: Uncharacterized protein Aq 1956
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.90  E-value=2.2e-06  Score=74.96  Aligned_cols=73  Identities=8%  Similarity=0.068  Sum_probs=52.5

Q ss_pred             CceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHh-------------------------
Q 014212          222 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAF-------------------------  276 (429)
Q Consensus       222 ~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~l-------------------------  276 (429)
                      .++.+++|+|++++.+.++++...... .+.+|+.||++|.+..|.+...+...+                         
T Consensus         3 ~ri~~isD~h~~~~~l~~l~~~~~~~~-~D~vli~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~d~~~~~~~~~~   81 (257)
T d2yvta1           3 RKVLAIKNFKERFDLLPKLKGVIAEKQ-PDILVVVGNILKNEALEKEYERAHLARREPNRKVIHENEHYIIETLDKFFRE   81 (257)
T ss_dssp             CEEEEEECCTTCGGGHHHHHHHHHHHC-CSEEEEESCCCCCHHHHHHHHHHHHTTCCCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHhhcC-CCEEEEecccCCCCCCCHHHHHHHHhhhhhceeeeccccccchhhHHHHHHH
Confidence            468999999999999998887654332 356999999999887775544333221                         


Q ss_pred             hhhCCCeEEEecCCccccc
Q 014212          277 KCMCPSAIYLSRGNHESKS  295 (429)
Q Consensus       277 k~~~p~~~~~lrGNhe~~~  295 (429)
                      ....+-.++++.||||...
T Consensus        82 L~~~~~pv~~i~GNHD~~~  100 (257)
T d2yvta1          82 IGELGVKTFVVPGKNDAPL  100 (257)
T ss_dssp             HHTTCSEEEEECCTTSCCH
T ss_pred             HHhcCCcEEEEeCCCcchh
Confidence            1223568999999999753

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.72  E-value=0.00025  Score=55.03  Aligned_cols=91  Identities=22%  Similarity=0.177  Sum_probs=45.7

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHH
Q 014212           29 KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA----MGKFKEALKD  104 (429)
Q Consensus        29 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~  104 (429)
                      |+++|+.+|+++.+..  ++.+++++|.  ....++++|+.+++++.+.  .++.+.+.||.+|..    ..++++|+.+
T Consensus         8 d~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~   81 (133)
T d1klxa_           8 DLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY   81 (133)
T ss_dssp             HHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHH
Confidence            4555555555555443  2333344432  2234555555555555443  455555555555543    2345555555


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHH
Q 014212          105 FQQVKKLSPNDPDAAQKVKECEK  127 (429)
Q Consensus       105 ~~~al~~~p~~~~~~~~l~~~~~  127 (429)
                      |+++.+.  .++.+.+.++.++.
T Consensus        82 ~~~aa~~--g~~~a~~~Lg~~y~  102 (133)
T d1klxa_          82 YSKACGL--NDQDGCLILGYKQY  102 (133)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHH
T ss_pred             Hhhhhcc--CcchHHHHHHHHHH
Confidence            5555543  34555555555543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.66  E-value=0.0002  Score=55.70  Aligned_cols=84  Identities=20%  Similarity=0.123  Sum_probs=73.0

Q ss_pred             HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCC
Q 014212           26 RAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA----MGK   97 (429)
Q Consensus        26 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~   97 (429)
                      ...++++|+.+|+++.+.  .++.+.+.+|.+|..    ..++++|+.+|+++.+.  .++.+.++||.+|..    ..+
T Consensus        35 ~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d  110 (133)
T d1klxa_          35 SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKN  110 (133)
T ss_dssp             TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC
T ss_pred             cccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCC
Confidence            346899999999999764  688999999999986    46799999999999876  689999999999987    568


Q ss_pred             HHHHHHHHHHHHHhCC
Q 014212           98 FKEALKDFQQVKKLSP  113 (429)
Q Consensus        98 ~~eA~~~~~~al~~~p  113 (429)
                      .++|+.+|++|.++..
T Consensus       111 ~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_         111 EKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHCCC
Confidence            9999999999998753

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.62  E-value=0.0002  Score=62.47  Aligned_cols=95  Identities=20%  Similarity=0.221  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCCCChHHH
Q 014212           14 AEELKALANEAFR----AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRYPKGY   85 (429)
Q Consensus        14 ~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~   85 (429)
                      ...+..+|..+..    ..+...+..+++++.+  +.++.+.+++|.++..    ..++++|+.+|+++.+.  .++.++
T Consensus       142 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~  217 (265)
T d1ouva_         142 GDGCTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGC  217 (265)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred             cchhhhhhhhhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHH
Confidence            3445555555554    3344555555555543  3455666666666655    44566666666666555  355666


Q ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHHhC
Q 014212           86 YRRGAAYLA----MGKFKEALKDFQQVKKLS  112 (429)
Q Consensus        86 ~~la~~~~~----~g~~~eA~~~~~~al~~~  112 (429)
                      ++||.+|..    ..++++|+.+|++|....
T Consensus       218 ~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g  248 (265)
T d1ouva_         218 FNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  248 (265)
T ss_dssp             HHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence            666666654    235556666666666554

>d1xm7a_ d.159.1.8 (A:) Hypothetical protein aq_1666 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Hypothetical protein aq 1666
domain: Hypothetical protein aq 1666
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.22  E-value=0.00028  Score=58.42  Aligned_cols=43  Identities=26%  Similarity=0.263  Sum_probs=32.7

Q ss_pred             CCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecCCcccc
Q 014212          248 SEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK  294 (429)
Q Consensus       248 ~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrGNhe~~  294 (429)
                      .+.+.+++|||+.-+.....+.+.++.+|    |.+.++|+||||..
T Consensus        42 ~~~D~v~~LGD~~~~~~~~~~~~~~l~~L----~g~~~lI~GNHD~~   84 (188)
T d1xm7a_          42 KPEDTLYHLGDFTWHFNDKNEYLRIWKAL----PGRKILVMGNHDKD   84 (188)
T ss_dssp             CTTCEEEECSCCBSCSCCTTSHHHHHHHS----SSEEEEECCTTCCC
T ss_pred             CCCCEEEEeCCccccCCCHHHHHHHHHHC----CCceEEEecCCCch
Confidence            34567999999987655555677777666    56889999999964

>d3d03a1 d.159.1.11 (A:1-271) Glycerophosphodiesterase GpdQ {Enterobacter aerogenes [TaxId: 548]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: GpdQ-like
domain: Glycerophosphodiesterase GpdQ
species: Enterobacter aerogenes [TaxId: 548]

Probab=96.96  E-value=0.00092  Score=58.60  Aligned_cols=70  Identities=21%  Similarity=0.245  Sum_probs=44.7

Q ss_pred             ceEEEccCC---------CC---HHHHHHHHHHcC-CCCCCCCeEEccccccCCCCcHHHHHHHHHhhhhCCCeEEEecC
Q 014212          223 HFTVCGDVH---------GQ---FYDLLNIFELNG-LPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRG  289 (429)
Q Consensus       223 ~~~v~GDih---------G~---~~~l~~~l~~~~-~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk~~~p~~~~~lrG  289 (429)
                      ++..+.|+|         |.   ...+.++++... ..+..+.+|+.||++|.|..  +....+.......+-.+++++|
T Consensus         2 ~i~hiSD~Hl~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~D~vv~~GDl~~~~~~--~~y~~~~~~l~~l~~p~~~i~G   79 (271)
T d3d03a1           2 LLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRP--EEYQVARQILGSLNYPLYLIPG   79 (271)
T ss_dssp             EEEEECCCCBCSTTCCBTTTBCHHHHHHHHHHHHHTCSSCCSEEEEESCCBSSCCH--HHHHHHHHHHTTCSSCEEEECC
T ss_pred             EEEEEecCcCCCCccccccCcCHHHHHHHHHHHHHhcCCCCCEEEECcccCcCCcc--hhHHHHHHHHhccCCCEEEEec
Confidence            477889999         21   234555555432 23344569999999998853  3444444433334567899999


Q ss_pred             Ccccc
Q 014212          290 NHESK  294 (429)
Q Consensus       290 Nhe~~  294 (429)
                      |||..
T Consensus        80 NHD~~   84 (271)
T d3d03a1          80 NHDDK   84 (271)
T ss_dssp             TTSCH
T ss_pred             Cccch
Confidence            99964

>d1ii7a_ d.159.1.4 (A:) Mre11 {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: DNA double-strand break repair nuclease
domain: Mre11
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.76  E-value=0.00092  Score=59.95  Aligned_cols=71  Identities=18%  Similarity=0.207  Sum_probs=46.5

Q ss_pred             ceEEEccCCC-------------CHHHHHHHHHHcCCCCCCCCeEEccccccCCCCcHHHHHHHHHhh---hhCCCeEEE
Q 014212          223 HFTVCGDVHG-------------QFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFK---CMCPSAIYL  286 (429)
Q Consensus       223 ~~~v~GDihG-------------~~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~~s~e~~~~l~~lk---~~~p~~~~~  286 (429)
                      ++..++|+|-             .+..|.++++.+... ..+.+++.||++|++.-+.+++..+....   ...+-.|++
T Consensus         2 kilh~SDlHlG~~~~~~~~~~~~~~~~l~~iv~~a~~~-~~D~vli~GDlfd~~~~~~~~~~~~~~~~~~l~~~~i~v~~   80 (333)
T d1ii7a_           2 KFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQE-NVDFILIAGDLFHSSRPSPGTLKKAIALLQIPKEHSIPVFA   80 (333)
T ss_dssp             EEEEECCCCBTCCGGGCHHHHHHHHHHHHHHHHHHHHT-TCSEEEEESCSBSSSSCCHHHHHHHHHHHHHHHTTTCCEEE
T ss_pred             EEEEEecCcCCCCCcCchhHHHHHHHHHHHHHHHHHHc-CCCEEEECCCCCCCCCCCHHHHHHHHHHHhhHHhcCCcEEE
Confidence            4788999992             133445555543222 23468999999999876777666554332   223456899


Q ss_pred             ecCCcccc
Q 014212          287 SRGNHESK  294 (429)
Q Consensus       287 lrGNhe~~  294 (429)
                      +.||||..
T Consensus        81 i~GNHD~~   88 (333)
T d1ii7a_          81 IEGNHDRT   88 (333)
T ss_dssp             ECCTTTCC
T ss_pred             eCCCCccc
Confidence            99999964

>d2hy1a1 d.159.1.11 (A:10-265) Rv0805 cyclic nucleotide phosphodiesterase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: GpdQ-like
domain: Rv0805 cyclic nucleotide phosphodiesterase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.45  E-value=0.0015  Score=56.56  Aligned_cols=72  Identities=18%  Similarity=0.203  Sum_probs=44.2

Q ss_pred             ceEEEccCCCC------------HHHHHHHHHHcC-CCCCCCCeEEccccccCCCCc-HH-HHHHHHHhhhhCCCeEEEe
Q 014212          223 HFTVCGDVHGQ------------FYDLLNIFELNG-LPSEENPYLFNGDFVDRGSFS-VE-VILTLFAFKCMCPSAIYLS  287 (429)
Q Consensus       223 ~~~v~GDihG~------------~~~l~~~l~~~~-~~~~~~~~~~lGD~vdrG~~s-~e-~~~~l~~lk~~~p~~~~~l  287 (429)
                      ++..+.|+|-.            .+.|.++++... ..+..+.++..||+++.|... -+ ....+..+....+-.++++
T Consensus         6 ~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~pD~vl~~GDl~~~g~~~~~~~~~~~l~~~~~~~~~p~~~v   85 (256)
T d2hy1a1           6 VLLHISDTHLIGGDRRLYGAVDADDRLGELLEQLNQSGLRPDAIVFTGDLADKGEPAAYRKLRGLVEPFAAQLGAELVWV   85 (256)
T ss_dssp             EEEEECCCCBC----------CHHHHHHHHHHHHHHHTCCCSEEEECSCCBSSCCHHHHHHHHHHHHHHHHHHTCEEEEC
T ss_pred             EEEEEeeCccCCCCcccccCcCHHHHHHHHHHHHHhcCCCCCEEEECCCCCCCCChhHHHHHHHHhhhhhhhcCCCEEEE
Confidence            47888999931            234555665432 123345688899999998643 12 2233333333345679999


Q ss_pred             cCCcccc
Q 014212          288 RGNHESK  294 (429)
Q Consensus       288 rGNhe~~  294 (429)
                      +||||..
T Consensus        86 ~GNHD~~   92 (256)
T d2hy1a1          86 MGNHDDR   92 (256)
T ss_dssp             CCTTSCH
T ss_pred             cccccch
Confidence            9999954

>d2nxfa1 d.159.1.12 (A:3-322) Uncharacterized C17orf48 homolog zgc:64213 {Zebrafish (Danio rerio) [TaxId: 7955]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: ADPRibase-Mn-like
domain: Uncharacterized C17orf48 homolog zgc:64213
species: Zebrafish (Danio rerio) [TaxId: 7955]

Probab=95.45  E-value=0.0063  Score=53.35  Aligned_cols=71  Identities=21%  Similarity=0.101  Sum_probs=45.5

Q ss_pred             ceEEEccCCCC-------------------HHHHHHHHHHcCCCCCCCCeEEccccccCCC----CcHHHHHHHHHhhhh
Q 014212          223 HFTVCGDVHGQ-------------------FYDLLNIFELNGLPSEENPYLFNGDFVDRGS----FSVEVILTLFAFKCM  279 (429)
Q Consensus       223 ~~~v~GDihG~-------------------~~~l~~~l~~~~~~~~~~~~~~lGD~vdrG~----~s~e~~~~l~~lk~~  279 (429)
                      ++.+++|+|=.                   ...+.++++..... ..+.+|++||++|.+.    ...+.+..+...-..
T Consensus         5 ~f~~isD~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~i~~~-~~DfVv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~   83 (320)
T d2nxfa1           5 TFGLIADVQYADIEDGENYLRTRRRYYRGSADLLRDAVLQWRRE-RVQCVVQLGDIIDGHNRRRDASDRALDTVMAELDA   83 (320)
T ss_dssp             EEEEECCCCBCSSCCEECTTSSSEECTTHHHHHHHHHHHHHHHT-TCSEEEECSCCBCTHHHHTTCHHHHHHHHHHHHHT
T ss_pred             EEEEEecCCCCCCCCccccccccchhhHHHHHHHHHHHHHHhhC-CCCEEEECCCCCCCCCcchhHHHHHHHHHHHHHHH
Confidence            37888999922                   33445555443322 2346899999998762    344455555444444


Q ss_pred             CCCeEEEecCCcccc
Q 014212          280 CPSAIYLSRGNHESK  294 (429)
Q Consensus       280 ~p~~~~~lrGNhe~~  294 (429)
                      .+..++.+.||||..
T Consensus        84 ~~~p~~~v~GNHD~~   98 (320)
T d2nxfa1          84 CSVDVHHVWGNHEFY   98 (320)
T ss_dssp             TCSEEEECCCHHHHH
T ss_pred             cCCCEEEecccCccc
Confidence            577899999999964

>d2qfra2 d.159.1.1 (A:121-432) Plant purple acid phosphatase, catalytic domain {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Purple acid phosphatase-like
domain: Plant purple acid phosphatase, catalytic domain
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=94.52  E-value=0.03  Score=49.66  Aligned_cols=69  Identities=22%  Similarity=0.187  Sum_probs=39.5

Q ss_pred             ceEEEccCCCCHHHHHHHHHHcCCCCCCCCeEEccccc-cCCCC---cH---HHHHHHHHhhhhCCCeEEEecCCccc
Q 014212          223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFV-DRGSF---SV---EVILTLFAFKCMCPSAIYLSRGNHES  293 (429)
Q Consensus       223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGD~v-drG~~---s~---e~~~~l~~lk~~~p~~~~~lrGNhe~  293 (429)
                      ++.++||++........+..........+-++++||++ +.|..   ..   +-...+-.+....|  ++.++||||.
T Consensus         9 ~F~v~GD~g~~~~~~~~~~~~~~~~~~pdfvl~~GDl~Y~~~~~~~~~~~wd~~~~~~~~~~~~~P--~~~~~GNHD~   84 (312)
T d2qfra2           9 TFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQP--WIWTAGNHEI   84 (312)
T ss_dssp             EEEEECSCCSBHHHHHHHHHHHHCSSCCSEEEECSCCCCGGGSGGGCTHHHHHHHHHHHHHHTTSC--EEECCCGGGT
T ss_pred             EEEEEeeCCCCCchHHHHHHHHHcCCCCCEEEECCCCCcCCCCcccchHHHHHHHHHHHHHhhcce--EEEecccccc
Confidence            48899999776666554433222223345688899997 22321   21   23333333332233  6788999995

>d1utea_ d.159.1.1 (A:) Mammalian purple acid phosphatase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Purple acid phosphatase-like
domain: Mammalian purple acid phosphatase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.99  E-value=0.018  Score=50.25  Aligned_cols=71  Identities=20%  Similarity=0.140  Sum_probs=36.4

Q ss_pred             ceEEEccCCCCHH----------HHHHHHHHcCCCCCCCCeEEccccc-cCCCCcH------HHHHHHHHhhhhCCCeEE
Q 014212          223 HFTVCGDVHGQFY----------DLLNIFELNGLPSEENPYLFNGDFV-DRGSFSV------EVILTLFAFKCMCPSAIY  285 (429)
Q Consensus       223 ~~~v~GDihG~~~----------~l~~~l~~~~~~~~~~~~~~lGD~v-drG~~s~------e~~~~l~~lk~~~p~~~~  285 (429)
                      +..|+||.|+...          .+..+.+..... ..+-+|++||+| +-|..+.      +....++.......--++
T Consensus         6 ~F~vigD~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dfvl~~GD~vy~~g~~~~~~~~~~~~~~~~~~~~~~~~~P~~   84 (302)
T d1utea_           6 RFVAVGDWGGVPNAPFHTAREMANAKAIATTVKTL-GADFILSLGDNFYFTGVHDAKDKRFQETFEDVFSDPSLRNVPWH   84 (302)
T ss_dssp             EEEEECSCCCCSSTTSSCHHHHHHHHHHHHHHHHH-CCSEEEECSCCSTTTCCSSTTCTHHHHHTTTTSCSGGGTTCCEE
T ss_pred             EEEEEecCCCCCCcccccHHHHHHHHHHHHHHhhC-CCCEEEECCCCCCCCCCCcccHHHHHHHHHHHhhhhhhcCCceE
Confidence            5889999875311          111222222211 234589999999 4443321      111111111222344578


Q ss_pred             EecCCcccc
Q 014212          286 LSRGNHESK  294 (429)
Q Consensus       286 ~lrGNhe~~  294 (429)
                      .+.||||..
T Consensus        85 ~~~GNHD~~   93 (302)
T d1utea_          85 VLAGNHDHL   93 (302)
T ss_dssp             ECCCHHHHH
T ss_pred             Eeecccccc
Confidence            899999943