Citrus Sinensis ID: 014225

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------43
Protein Sequence
MRNEVRLEEDEEQLMTTNGSSISEHQKISTSSRFSSLLASKDRDYLLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLECGYEVHPKCVRAVDRGSMIQR
Secondary Structure (PSIPRED)
cccccccHHHHHHHHcccccccHHcccccccccHHHHHccccccccccccccEEEcccccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHccccEEEEEEEccccHHHHHHHHHccccEEEccccHHHHHHHHHHcccccccEEEEEccccccccccccccEEHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccHHHHHHHHHccccEEEccccccHHHHHHHcccccccEEEEEcccccEEcccccHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccccccEEEEEEcccccccEEccccccccccEEEEcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHEEEHccccEEEEccccHHHHHHcccccccHHHHHccccccEEEccccccEccHHHcccEEEEEEEccccHHHHHHHHHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHccccEEcccccHHHHHHHHHHcccccccEEEEEcccccccEEEccccHHHHccccccccccccHHHHHHHHHHccccccccHHHHHHcccccEEEEccccEEEEHHHHcccEEEEEEEccccHHHHHHHHHHHHHHHHHcccccHHHcccccEEEEEEEccccHHHHHHHHcccccEEcccccHHHHHHHHHcccccccEEEEEcccccEEcccHHHHHcccccccccccHHHHHHHHHHHHHHHHccccHEEcccccccEEEEEcccccEEEEEccccccccEEEEEEcHccccccHHHHcccccccEccc
Coil and Loop (DISEMBL)
mrnevrleedeeqlmttngssisehqkistssrfssllaskdrdyllnqhgtqvkvsdlEGKVTALYfsanwyppcgnftGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNnyracmpwlavpysdletkkalnrkfdiegipclvvlqpyddkddatlHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTnhdrgyllghppdekvpvsslvgktVGLYFsarwcipcekfMPKLLSIYQKIKQNLVEKGDALEDFEVVFVstdrdqtsfesyfgtmpwlalpfgdptiKELTKYfdvqgipclviigpegktvtKQGRNLINLyqenaypftEAKLEFLEKQMEEEAknlprsefhighrhelnlvsegtgggpficcdcdeqgsgwayqclecgyevhpkcvravdrgsmiqr
Flexible Loop (DISEMBL)
mrnevrleedeeqlmttngssisehqkiSTSSRFSSLLASKDRDYLLNQhgtqvkvsdlEGKVTALYFsanwyppcGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLECGYEVHPKCVRAVDRGSMIQR
Low Complexity Region (SEG)
MRNEVRLEEDEEQLMTTNGSSISEHQKIstssrfssllasKDRDYLLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTkekleelqkeekekheRQTLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLECGYEVHPKCVRAVDRGSMIQR
Disordered region (IsUnstruct)
*******************************************DYLLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTK*****************TLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFL***************FHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLECGYEVHPKCVRAV********
Disordered Region (DISOPRED)
**************************************ASKDRDYLLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLL****DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLE*****************GHRHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLECGYEVHPKC************
Disordered Region (DISEMBL)
**********************************SSLLASKDRDYLLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEE***********QTLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLECGYEVHPKCVRAVDRGSMIQR
Disordered Region (DISPRO)
***EVRLEEDEEQLMTTNGSSISEHQK*STSSRFSSLLASKDRDYLLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLECGYEVHPKCVRA*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRNEVRLEEDEEQLMTTNGSSISEHQKISTSSRFSSLLASKDRDYLLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAxxxxxxxxxxxxxxxxxxxxxLPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLECGYEVHPKCVRAVDRGSMIQR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	428	2.2.26 [Sep-21-2011]
Q0JIL1	394	Probable nucleoredoxin 2	yes	no	0.850	0.923	0.482	1e-106
O80763	578	Probable nucleoredoxin 1	yes	no	0.852	0.631	0.442	1e-85
Q7Y0E8	569	Probable nucleoredoxin 1-	no	no	0.915	0.688	0.427	3e-84
Q7Y0F2	581	Probable nucleoredoxin 1-	no	no	0.885	0.652	0.439	2e-83
Q8VZQ0	392	Probable nucleoredoxin 3	no	no	0.876	0.956	0.404	9e-76
Q7XPE8	471	Probable nucleoredoxin 3	no	no	0.761	0.692	0.377	3e-65
P97346	435	Nucleoredoxin OS=Mus musc	yes	no	0.607	0.597	0.310	2e-32
Q6DKJ4	435	Nucleoredoxin OS=Homo sap	yes	no	0.602	0.593	0.309	7e-32
A6QLU8	435	Nucleoredoxin OS=Bos taur	yes	no	0.602	0.593	0.306	7e-32
Q6GM16	414	Nucleoredoxin OS=Xenopus	N/A	no	0.577	0.596	0.318	3e-31

>sp|Q0JIL1|NRX2_ORYSJ Probable nucleoredoxin 2 OS=Oryza sativa subsp. japonica GN=Os01g0794400 PE=2 SV=1

 Score =  384 bits (986), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 182/377 (48%), Positives = 258/377 (68%), Gaps = 13/377 (3%)

Query: 46  LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 105
           L++  G +V++S+LEGK+  LYF+ANWYP C  FT  L   Y +L+ +G+ FEV+FVS D
Sbjct: 26  LISPTGNEVQISELEGKIIGLYFAANWYPKCEAFTPALTAAYHQLKEHGAGFEVIFVSCD 85

Query: 106 EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVE 165
           E+  +F  +   MPW AVP+ D+  KK L+ +F +EGIP LVVL P     +    D VE
Sbjct: 86  ENRPSFERFHRAMPWPAVPFGDIGCKKRLSERFQVEGIPRLVVLAP---NGEVVQPDAVE 142

Query: 166 LIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPDEKVPVSSLV 225
           L+++YG RAFPFT  ++ EL+ +E+ K   QTL  + +   + Y+ G    E+VP+SSLV
Sbjct: 143 LVHRYGDRAFPFTSARVAELEADEQRKFASQTLEKIFSVSGKDYVNGS--QEQVPISSLV 200

Query: 226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFES 285
           GKTVGLYFSA  C PC KF  KL +IY  +K      G A EDFE++++  D+++  +  
Sbjct: 201 GKTVGLYFSAHRCAPCIKFTAKLAAIYSNLK------GKA-EDFEIIYIPMDKEEDGYLR 253

Query: 286 YFGTMPWLALPFGD-PTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYP 344
               MPWLALP+ D  +   L +YFDV+ IP LV++GP+GKTVT++GRNL+NLY + A+P
Sbjct: 254 SCSDMPWLALPYDDGASSGALARYFDVREIPTLVVVGPDGKTVTREGRNLVNLYFDMAFP 313

Query: 345 FTEAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWAYQ 404
           FT+ ++  L++  +E+AK  P S  H GHRHEL++VS+ +GGGP+ICC+CDEQG GWAYQ
Sbjct: 314 FTDEQIRLLQEMEDEDAKGYPPSLRHTGHRHELSIVSDKSGGGPYICCECDEQGLGWAYQ 373

Query: 405 CLECGYEVHPKCVRAVD 421
           C+ CGYE+H +C R ++
Sbjct: 374 CIACGYEIHLRCGRDME 390

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 1EC: .EC: 8EC: .EC: 1EC: .EC: 8

>sp|O80763|NRX1_ARATH Probable nucleoredoxin 1 OS=Arabidopsis thaliana GN=At1g60420 PE=1 SV=1

 Score =  317 bits (811), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 170/384 (44%), Positives = 236/384 (61%), Gaps = 19/384 (4%)

Query: 36  SLLASKDRDYLLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGS 95
           S+L +  RD++++  G +V VS+LEGK   L FS   Y  C   T  LV+ Y +L+ N  
Sbjct: 178 SVLVTPSRDFVISPDGNKVPVSELEGKTIGLLFSVASYRKCTELTPKLVEFYTKLKENKE 237

Query: 96  DFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDK 155
           DFE+V +S ++D  +FN      PWLA+P++D    K L R F +  +P LV+L P    
Sbjct: 238 DFEIVLISLEDDEESFNQDFKTKPWLALPFNDKSGSK-LARHFMLSTLPTLVILGP---- 292

Query: 156 DDATLHDGV-ELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHP 214
           D  T H  V E I  YG+ A+PFT EK +EL++ EK K E QTL +LL + D  Y+LG  
Sbjct: 293 DGKTRHSNVAEAIDDYGVLAYPFTPEKFQELKELEKAKVEAQTLESLLVSGDLNYVLGKD 352

Query: 215 PDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 274
              KV VS LVGKT+ +YFSA WC PC  F PKL+ +Y++IK+         E FE++F+
Sbjct: 353 -GAKVLVSDLVGKTILMYFSAHWCPPCRAFTPKLVEVYKQIKERN-------EAFELIFI 404

Query: 275 STDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNL 334
           S+DRDQ SF+ Y+  MPWLALPFGDP    L K F V GIP L  +GP G+TVTK+ R+L
Sbjct: 405 SSDRDQESFDEYYSQMPWLALPFGDPRKASLAKTFKVGGIPMLAALGPTGQTVTKEARDL 464

Query: 335 INLYQENAYPFTEAKLEFLEKQMEEEAKNLPRSEFHIGH-RHELNLVSEGTGGGPFICCD 393
           +  +  +AYPFTE +L+ +E + +E AK+ P+   H+ H  HEL L    T    + C  
Sbjct: 465 VVAHGADAYPFTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELEL----TRVQVYTCDK 520

Query: 394 CDEQGSGWAYQCLECGYEVHPKCV 417
           C+E+G+ W+Y C EC +++H KC 
Sbjct: 521 CEEEGTIWSYHCDECDFDLHAKCA 544

Probable thiol-disulfide oxidoreductase required for pollen tube growth and pollen function in the pistil. Seems not to be required for in vitro pollen tube growth. May be involved in the generation of lipid signaling molecules in pistil.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|Q7Y0E8|NRX11_ORYSJ Probable nucleoredoxin 1-1 OS=Oryza sativa subsp. japonica GN=Os03g0405500 PE=2 SV=1

 Score =  312 bits (800), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 182/426 (42%), Positives = 252/426 (59%), Gaps = 34/426 (7%)

Query: 9   EDEEQLMTTNGSS-----------ISEHQKISTSSR-FSSLLASKDRDYLLNQHGTQVKV 56
           ED  +L+T +G+            + E +K +  ++   S+L +  RDYLL+  G +V +
Sbjct: 132 EDGVELVTVHGTEAYPFTTERINELKEQEKAAKDNQTVQSVLGTPTRDYLLSNKGDRVPI 191

Query: 57  SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRA 116
           SDLEGK   L F  N Y P   FT +L   YE+L+  G  FEVV VS D D    N   A
Sbjct: 192 SDLEGKYVGLCFVVNGYGPVVQFTSLLAKFYEKLKEVGEKFEVVAVSLDSDEELSNESFA 251

Query: 117 CMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGV-ELIYKYGIRA- 174
            MPWLA+P  D   +K L R F++ G+P LV++ P    D  TL++ V ++I ++G  A 
Sbjct: 252 GMPWLAIPQEDKMGEK-LARYFELRGLPTLVLIGP----DGKTLNNNVADIIDEHGQDAW 306

Query: 175 --FPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTVGLY 232
             FPFT EK+E L ++ K K E QTL +LL   D  ++LG     KVPVS LVGKTV LY
Sbjct: 307 EGFPFTAEKMEILAEKAKAKAELQTLESLLVIGDLDFVLGKD-GAKVPVSELVGKTVLLY 365

Query: 233 FSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPW 292
           FSA+WC PC  F+PKL+  Y KIK+          DFE++F+S+DRDQ+S++ +F  MPW
Sbjct: 366 FSAKWCGPCRAFLPKLVDEYNKIKEKH-------NDFEIIFISSDRDQSSYDEFFSGMPW 418

Query: 293 LALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEF 352
           LALP GD   + L+K F V+GIP LV IG +G+TV +  +  +  +  +A+PFTE +L  
Sbjct: 419 LALPLGDERKQHLSKTFRVRGIPSLVAIGADGRTVARDAKTPLTAHGADAFPFTEERLLE 478

Query: 353 LEKQMEEEAKNLPRSEFHIGH-RHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLECGYE 411
           +E++++E AK  P    H  H  HEL L    T G    C  CDE GS W+Y+C EC ++
Sbjct: 479 MERKIDEMAKGWPGKLKHELHDEHELVLTRCTTYG----CDGCDEMGSSWSYRCRECDFD 534

Query: 412 VHPKCV 417
           +HPKC 
Sbjct: 535 LHPKCA 540

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|Q7Y0F2|NRX12_ORYSJ Probable nucleoredoxin 1-2 OS=Oryza sativa subsp. japonica GN=Os03g0405900 PE=2 SV=1

 Score =  310 bits (793), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 178/405 (43%), Positives = 243/405 (60%), Gaps = 26/405 (6%)

Query: 22  ISEHQKISTSSR-FSSLLASKDRDYLLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFT 80
           + E +K +  ++   SL  +  RDYL+   G +V +SDLEGK   L F  N Y P   FT
Sbjct: 163 LKEQEKAAKDNQTIHSLFGTPTRDYLITNKGDKVPISDLEGKYVGLCFVVNGYGPVVQFT 222

Query: 81  GVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI 140
            VL  +YE+L+  G  FEVV VS D D  +FN   A MPWLA+P  D   +K L R F++
Sbjct: 223 SVLAKIYEKLKAVGEKFEVVMVSLDGDEESFNESFADMPWLAIPQGDKMCEK-LARYFEL 281

Query: 141 EGIPCLVVLQPYDDKDDATLHDGV-ELIYKYGIRA---FPFTKEKLEELQKEEKEKHERQ 196
            G+P LV++ P    D  TL+D + ++I ++G  A   FPF+ EKLE L ++ K K E Q
Sbjct: 282 SGLPMLVLIGP----DGKTLNDDIADIIDEHGPDAWEGFPFSAEKLEILAEKAKAKAESQ 337

Query: 197 TLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIK 256
           TL +LL   D  ++LG     KVPVS LVGKTV LYFSA+WC PC  F+PKL++ Y KIK
Sbjct: 338 TLESLLVTGDLDFVLGKD-GAKVPVSELVGKTVLLYFSAKWCPPCRAFLPKLVNEYNKIK 396

Query: 257 QNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPC 316
           +          DFE+VF+S+DR+Q+S++ +F  MPWLALP GD   ++L+K F + GIP 
Sbjct: 397 EKH-------NDFEIVFISSDREQSSYDEFFSGMPWLALPLGDERKQQLSKIFKITGIPS 449

Query: 317 LVIIGPEGKTVTKQGRNLINLYQENAYPFT----EAKLEFLEKQMEEEAKNLPRSEFHIG 372
           LV IGP+GKTVTK  +  +  +  +A+PFT    +   +  EK++ + AK  P    H  
Sbjct: 450 LVAIGPDGKTVTKDAKTPLVAHGADAFPFTEEKLQELEKEKEKKINDMAKGWPEKLKHDL 509

Query: 373 HRHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLECGYEVHPKCV 417
           H HEL L    T G    C  CDE G  W+Y+C EC +++HPKC 
Sbjct: 510 HDHELVLTRCTTYG----CDGCDEMGDSWSYRCKECDFDLHPKCA 550

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|Q8VZQ0|NRX3_ARATH Probable nucleoredoxin 3 OS=Arabidopsis thaliana GN=At4g31240 PE=2 SV=1

 Score =  284 bits (727), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 158/391 (40%), Positives = 226/391 (57%), Gaps = 16/391 (4%)

Query: 27  KISTSSRFSSLLASKDRDYLLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDV 86
           K   S    S+LA++  ++LL+ H  +V +  + GK   L+FSA W  PC +FT  L+ +
Sbjct: 10  KFPESGDLYSILAAEGIEFLLS-HSGEVPLEYIHGKTICLFFSAIWCRPCKDFTPELIKL 68

Query: 87  YEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCL 146
           YE L+N G + E++FVS D D+ +F  +  CMPWLAVP+ +L     L  K+ I  IP L
Sbjct: 69  YENLQNRGEELEIIFVSFDHDMTSFYEHFWCMPWLAVPF-NLSLLNKLRDKYGISRIPSL 127

Query: 147 VVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHD 206
           V L  Y D + +   D + LI  YG  AFPFTK++ EEL+  +  K     L  LLT+  
Sbjct: 128 VPL--YSD-EISVAEDVIGLIEDYGSEAFPFTKKRKEELKAIDDSKRLGGQLEKLLTHES 184

Query: 207 RGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDAL 266
           R Y++      KV VS LVGKT+GLYF A WC P   F  +L+ +Y ++     +KG   
Sbjct: 185 RNYVVARN-GSKVLVSKLVGKTIGLYFGAHWCPPFRSFTSQLVDVYNELATT--DKGS-- 239

Query: 267 EDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKT 326
             FEV+ +STDRD   F      MPWLA+P+ D T ++L + F+V+ IP LVIIGPE KT
Sbjct: 240 --FEVILISTDRDSREFNINMTNMPWLAIPYEDRTRQDLCRIFNVKLIPALVIIGPEEKT 297

Query: 327 VTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGG 386
           VT   R +++LY   ++PFTE+++  L+  +++E  +LPR      H HEL L       
Sbjct: 298 VTTNAREMVSLYGSRSFPFTESRIVELKACLKKEGDSLPRKVKDNKHEHELKL----DMA 353

Query: 387 GPFICCDCDEQGSGWAYQCLECGYEVHPKCV 417
             ++C  C +QG  WA+ C  C Y++HP CV
Sbjct: 354 KAYVCDFCKKQGRFWAFSCNACDYDLHPTCV 384

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|Q7XPE8|NRX3_ORYSJ Probable nucleoredoxin 3 OS=Oryza sativa subsp. japonica GN=Os04g0608600 PE=2 SV=2

 Score =  249 bits (636), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 126/334 (37%), Positives = 198/334 (59%), Gaps = 8/334 (2%)

Query: 46  LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 105
           LL+  G ++ +S +EGK   L+FSA+W  PC NFT  L+ +Y +LRN   + E++F+S D
Sbjct: 26  LLSNGGKEIPLSSIEGKRICLFFSAHWCRPCRNFTPKLLQIYRKLRNTCKNMEIIFISLD 85

Query: 106 EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVE 165
            D  +F +Y   MPWLA+P+ D   ++ L  +FDIE IP L+ L            D V+
Sbjct: 86  RDEISFLDYFKGMPWLALPF-DTGLRQKLCVQFDIEHIPALIPLSTTLSHGFRVEEDAVK 144

Query: 166 LIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPDEKVPVSSLV 225
           L+ +YG+ A+PF  ++  EL+  +  + +   L+ LL   +R Y++      K P+S L 
Sbjct: 145 LVEEYGVDAYPFGAKRRSELEGMDDARRQGGNLLQLLGCKEREYVIS-ADGIKTPISDLN 203

Query: 226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFES 285
           GKT+GLYF A WC PC  F  +L   Y ++K   +  G+    F+V+F+S DR++  F++
Sbjct: 204 GKTIGLYFGAHWCPPCRAFTKQLREAYDELKA--LRPGN----FQVIFISMDRNEEEFQA 257

Query: 286 YFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPF 345
               MPW A+P+ D T++EL++ F ++GIP L+I+GP+GK     GR +I+ Y   A+PF
Sbjct: 258 SLSAMPWFAIPYSDTTVQELSRIFTIKGIPTLLILGPDGKVFKTDGRRIISKYGAMAFPF 317

Query: 346 TEAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNL 379
           TE++   LE+ +++E  +LP       H HEL L
Sbjct: 318 TESRAYELEEVLKKERDSLPHRVRDHRHEHELEL 351

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|P97346|NXN_MOUSE Nucleoredoxin OS=Mus musculus GN=Nxn PE=1 SV=1

 Score =  140 bits (352), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 151/312 (48%), Gaps = 52/312 (16%)

Query: 44  DYLLNQHGTQVKVSDLEGKVTAL---YFSANWYPPCGNFTGVLVDVYEELRNNGSD---- 96
           D L+   G +V V  L  +  AL   YF  +   PC   +  L   Y  LR + +     
Sbjct: 11  DKLVTGGGEEVDVHSLGARGIALLGLYFGCSLSAPCAQLSASLAAFYGRLRGDAAAGPGA 70

Query: 97  ---------------FEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE 141
                           E+VFVSSD+D   + ++   MPWLA+PY +   K  L  K+ + 
Sbjct: 71  GAGAGAAAEPEPRHRLEIVFVSSDQDQRQWQDFVRDMPWLALPYKEKHRKLKLWNKYRVS 130

Query: 142 GIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINL 201
            IP L+ L       DAT     +++ + G+      ++  E L+     K  R+ +   
Sbjct: 131 NIPSLIFL-------DATTG---KVVCRNGLLVI---RDDPEGLEFPWGPKPFREVIAGP 177

Query: 202 LTNHDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVE 261
           L  ++          + +  SSL G  VG+YFSA WC PC      L+  Y+KIK+    
Sbjct: 178 LLRNN---------GQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKE---- 224

Query: 262 KGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK-ELTKYFDVQGIPCLVII 320
              A ++FE++FVS DR + SF+ YF  MPWLA+P+ D   +  L + + +QGIP L+++
Sbjct: 225 ---AGQEFEIIFVSADRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVL 281

Query: 321 GPEGKTVTKQGR 332
            P+G+ +T+QGR
Sbjct: 282 DPQGEVITRQGR 293

Functions as a redox-dependent negative regulator of the Wnt signaling pathway, possibly by preventing ubiquitination of DVL3 by the BCR(KLHL12) complex. May also function as a transcriptional regulator act as a regulator of protein phosphatase 2A (PP2A).

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|Q6DKJ4|NXN_HUMAN Nucleoredoxin OS=Homo sapiens GN=NXN PE=1 SV=2

 Score =  138 bits (348), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 96/310 (30%), Positives = 150/310 (48%), Gaps = 52/310 (16%)

Query: 46  LLNQHGTQVKVSDLEGK---VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSD------ 96
           L+   G +V V  L  +   +  LYF  +   PC   +  L   Y  LR + +       
Sbjct: 13  LVTGGGEEVDVHSLGARGISLLGLYFGCSLSAPCAQLSASLAAFYGRLRGDAAAGPGPGA 72

Query: 97  -------------FEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGI 143
                         E+VFVSSD+D   + ++   MPWLA+PY +   K  L  K+ I  I
Sbjct: 73  GAGAAAEPEPRRRLEIVFVSSDQDQRQWQDFVRDMPWLALPYKEKHRKLKLWNKYRISNI 132

Query: 144 PCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLT 203
           P L+ L       DAT     +++ + G+      ++  E L+     K  R+ +   L 
Sbjct: 133 PSLIFL-------DATTG---KVVCRNGLLVI---RDDPEGLEFPWGPKPFREVIAGPLL 179

Query: 204 NHDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKG 263
            ++          + +  SSL G  VG+YFSA WC PC      L+  Y+KIK+      
Sbjct: 180 RNN---------GQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKE------ 224

Query: 264 DALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK-ELTKYFDVQGIPCLVIIGP 322
            A ++FE++FVS DR + SF+ YF  MPWLA+P+ D   +  L + + +QGIP L+++ P
Sbjct: 225 -AGQNFEIIFVSADRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIMLDP 283

Query: 323 EGKTVTKQGR 332
           +G+ +T+QGR
Sbjct: 284 QGEVITRQGR 293

Functions as a redox-dependent negative regulator of the Wnt signaling pathway, possibly by preventing ubiquitination of DVL3 by the BCR(KLHL12) complex. May also function as a transcriptional regulator act as a regulator of protein phosphatase 2A (PP2A).

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|A6QLU8|NXN_BOVIN Nucleoredoxin OS=Bos taurus GN=NXN PE=2 SV=1

 Score =  138 bits (348), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 95/310 (30%), Positives = 145/310 (46%), Gaps = 52/310 (16%)

Query: 46  LLNQHGTQVKVSDLEGK---VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSD------ 96
           L+   G +V V  L  +   +  LYF  +   PC   +  L   Y  LR + +       
Sbjct: 13  LVTGGGEEVDVHSLAARGISLLGLYFGCSLSAPCAQLSASLAAFYGRLRGDAAAGPGPGP 72

Query: 97  -------------FEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGI 143
                         E+VFVSSD+D   + ++   MPWLA+PY +   K  L  K+ I  I
Sbjct: 73  GAGASAEPEPRRRLEIVFVSSDQDQRQWQDFVRDMPWLALPYKEKHRKLKLWNKYRISNI 132

Query: 144 PCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLT 203
           P L+ L     K      +G+ +I           ++  E L+     K  R+ +   L 
Sbjct: 133 PSLIFLDATSGK--VVCRNGLLVI-----------RDDPEGLEFPWGPKPFREVIAGPLL 179

Query: 204 NHDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKG 263
             +          + +  SSL G  VG+YFSA WC PC      L+  Y+KIK+      
Sbjct: 180 RSN---------GQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKE------ 224

Query: 264 DALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK-ELTKYFDVQGIPCLVIIGP 322
            A + FE++FVS DR + SF+ YF  MPWLA+P+ D   +  L + + +QGIP L+++ P
Sbjct: 225 -AGQKFEIIFVSADRSEDSFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDP 283

Query: 323 EGKTVTKQGR 332
           +G+ +T+QGR
Sbjct: 284 QGEVITRQGR 293

Functions as a redox-dependent negative regulator of the Wnt signaling pathway, possibly by preventing ubiquitination of DVL3 by the BCR(KLHL12) complex. May also function as a transcriptional regulator act as a regulator of protein phosphatase 2A (PP2A).

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|Q6GM16|NXN_XENLA Nucleoredoxin OS=Xenopus laevis GN=nxn PE=2 SV=1

 Score =  136 bits (343), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/298 (31%), Positives = 138/298 (46%), Gaps = 51/298 (17%)

Query: 46  LLNQHGTQVKVSDLEGKVT--ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS 103
           L+N    +  V  L  +V+   L F      PC      L D Y + R+     E+VFVS
Sbjct: 15  LVNSEREEADVQALGSRVSLIGLLFGCGMSAPCLQLLPGLKDFYCKTRDR---LEIVFVS 71

Query: 104 SDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 163
           SD D   +  +   MPWLA+PY +   K  L  KF I  IP L+ ++    K      +G
Sbjct: 72  SDPDQKKWQLFVKDMPWLALPYQEKHRKLKLWNKFRISNIPSLIFIEASTVK--TVCRNG 129

Query: 164 VELI--------YKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPP 215
           + L+        + +G +  PF +     L +   +  E                     
Sbjct: 130 LLLVKDDPEGLEFPWGPK--PFCEVIAGPLIRNNSQSQES-------------------- 167

Query: 216 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 275
                 S+L G  VG+YFSA WC PC      L+  Y+KIK    E G   + FE+V VS
Sbjct: 168 ------STLEGSYVGIYFSAYWCPPCRSLTRVLVESYRKIK----ESG---QKFEIVLVS 214

Query: 276 TDRDQTSFESYFGTMPWLALPFGDPTIK-ELTKYFDVQGIPCLVIIGPEGKTVTKQGR 332
            DR + SF+ YF  MPWLA+P+ D   +  L + + +QGIP L+I+ P+G+ +T+QGR
Sbjct: 215 ADRSEESFKQYFSEMPWLAVPYSDEARRSRLNRLYGIQGIPNLIILDPKGEVITRQGR 272

Functions as a redox-dependent negative regulator of the Wnt signaling pathway.

Xenopus laevis (taxid: 8355)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	428
225459742	425	PREDICTED: probable nucleoredoxin 2 [Vit	0.992	1.0	0.735	0.0
224083147	423	predicted protein [Populus trichocarpa]	0.983	0.995	0.731	1e-179
255539056	389	nucleoredoxin, putative [Ricinus communi	0.873	0.961	0.765	1e-177
449519962	410	PREDICTED: probable nucleoredoxin 2-like	0.953	0.995	0.678	1e-167
449437178	410	PREDICTED: probable nucleoredoxin 2-like	0.953	0.995	0.676	1e-166
356509102	423	PREDICTED: probable nucleoredoxin 2-like	0.906	0.917	0.686	1e-159
255641294	423	unknown [Glycine max]	0.906	0.917	0.683	1e-159
357467067	429	Nucleoredoxin [Medicago truncatula] gi|3	0.981	0.979	0.645	1e-158
356517692	411	PREDICTED: probable nucleoredoxin 2-like	0.906	0.944	0.668	1e-154
356517694	434	PREDICTED: probable nucleoredoxin 2-like	0.906	0.894	0.633	1e-151

>gi|225459742|ref|XP_002285895.1| PREDICTED: probable nucleoredoxin 2 [Vitis vinifera]

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/428 (73%), Positives = 364/428 (85%), Gaps = 3/428 (0%)

Query: 1   MRNEVRLEEDEEQLMTTNGSSISEHQKISTSSRFSSLLASKDRDYLLNQHGTQVKVSDLE 60
           MR EV+ E    +    +G+       ++  SRFSSLLAS  RD+LL+  G QVKVS+L 
Sbjct: 1   MRKEVK-ETTSFKSEDGSGALNGVSDDLNYRSRFSSLLASTHRDFLLSPTGQQVKVSELN 59

Query: 61  GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPW 120
            KV  LYFSANWY PC  FT VL   YE+L++ G+ FE+VFVSSDED +AF+N+RACMPW
Sbjct: 60  DKVIGLYFSANWYAPCRKFTQVLAGAYEQLKSCGAGFEIVFVSSDEDSDAFDNFRACMPW 119

Query: 121 LAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKE 180
           LAVP+SDLETKKALNRKFDIEGIPCLV+LQP D+KD+ATLHDGVELIY+YG+ AFPFTK 
Sbjct: 120 LAVPFSDLETKKALNRKFDIEGIPCLVILQPNDNKDEATLHDGVELIYRYGVNAFPFTKV 179

Query: 181 KLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIP 240
           +LEEL+KEE+EKHE QTL NLLTNH+R +LLG P  ++VP+SSL+GKT+GLYFSA+WC+P
Sbjct: 180 RLEELRKEEREKHESQTLPNLLTNHNRDFLLGRPTAKQVPISSLIGKTIGLYFSAQWCLP 239

Query: 241 CEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 300
             KF PKL+SIYQKIKQ LV+  D  EDFE+VFVS+DRDQ SF+SYFGTMPWLA+PFGDP
Sbjct: 240 GVKFTPKLISIYQKIKQTLVD--DNEEDFEIVFVSSDRDQPSFDSYFGTMPWLAVPFGDP 297

Query: 301 TIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEE 360
           TIK LTKYFDVQGIPCLVI+GP+GKTVTKQGR LINLYQENAYPFTEAKLE LEKQM+EE
Sbjct: 298 TIKTLTKYFDVQGIPCLVILGPDGKTVTKQGRYLINLYQENAYPFTEAKLELLEKQMDEE 357

Query: 361 AKNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLECGYEVHPKCVRAV 420
           AK+LPRSE+H GHRHEL LVSEGTGGGPFICCDCDEQG GWAYQCLECGYEVHPKC+R V
Sbjct: 358 AKSLPRSEYHAGHRHELTLVSEGTGGGPFICCDCDEQGLGWAYQCLECGYEVHPKCMRVV 417

Query: 421 DRGSMIQR 428
           DRGS ++R
Sbjct: 418 DRGSTLER 425

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083147|ref|XP_002306954.1| predicted protein [Populus trichocarpa] gi|222856403|gb|EEE93950.1| predicted protein [Populus trichocarpa]

 Score =  633 bits (1633), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 310/424 (73%), Positives = 368/424 (86%), Gaps = 3/424 (0%)

Query: 5   VRLEEDEEQLMTTNGSSISEHQKISTSSRFSSLLASKDRDYLLNQHGTQVKVSDLEGKVT 64
           + LEE+  +L  +   +  +  +IS SSRFSSLLASKDRDYLL+Q GTQVKVSDLEGKV 
Sbjct: 1   MNLEENSRKLQASKAEANGDSHRIS-SSRFSSLLASKDRDYLLSQDGTQVKVSDLEGKVL 59

Query: 65  ALYFSANWYPPCGNFTG-VLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAV 123
            LYFSANWY PC +FT  VL+  Y++L++NGS+FE+VFVSSDEDL+AFNNYRA MPWL++
Sbjct: 60  GLYFSANWYAPCRSFTSQVLIGAYQDLKSNGSNFEIVFVSSDEDLDAFNNYRANMPWLSI 119

Query: 124 PYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLE 183
           P+SDLETKKALN KFD+E IPCLV+L P D+KD+ATLHDGVEL++++G++AFPFTKE+LE
Sbjct: 120 PFSDLETKKALNSKFDVEAIPCLVILHPKDNKDEATLHDGVELLHRFGVQAFPFTKERLE 179

Query: 184 ELQKEEKEKHERQTLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEK 243
           EL+ EEKEKHERQTL NLL  H+R YLLGHP   +VPV+SLVGKT+GLYFS+ WC+P  K
Sbjct: 180 ELKLEEKEKHERQTLTNLLICHNRDYLLGHPAPRQVPVASLVGKTIGLYFSSHWCLPGGK 239

Query: 244 FMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 303
           F PKL+SIYQKIKQ LV KG+  +DFE+VFVS+DRDQ  F+SYF +MPWLALPFGDP  K
Sbjct: 240 FTPKLISIYQKIKQMLVNKGND-DDFEIVFVSSDRDQAEFDSYFNSMPWLALPFGDPANK 298

Query: 304 ELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKN 363
            L K+FDV+GIPCLVI+GP+GKTV+K GRNLINLYQENAYPFTEA+++ LEKQM+EEA++
Sbjct: 299 TLAKHFDVKGIPCLVILGPDGKTVSKHGRNLINLYQENAYPFTEAQVDLLEKQMDEEAQS 358

Query: 364 LPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLECGYEVHPKCVRAVDRG 423
           LPRS+ H GHRHEL LVSEGTGGGPFICCDCDEQGSGWAYQCLECGYEVHPKCVRAVDRG
Sbjct: 359 LPRSKNHAGHRHELTLVSEGTGGGPFICCDCDEQGSGWAYQCLECGYEVHPKCVRAVDRG 418

Query: 424 SMIQ 427
           SM +
Sbjct: 419 SMAE 422

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539056|ref|XP_002510593.1| nucleoredoxin, putative [Ricinus communis] gi|223551294|gb|EEF52780.1| nucleoredoxin, putative [Ricinus communis]

 Score =  626 bits (1615), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 288/376 (76%), Positives = 334/376 (88%), Gaps = 2/376 (0%)

Query: 53  QVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN 112
           +VKVS+LEGKV  LYFSANWYPPC NF  VL  VYE+L+ NGS+FEVVFVSSDE+L+AFN
Sbjct: 16  KVKVSELEGKVIGLYFSANWYPPCRNFNQVLAGVYEQLKENGSNFEVVFVSSDENLDAFN 75

Query: 113 NYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGI 172
           NYRA MPWL++P+SDLETKKAL+RKF+IEG+PCLV+LQP DDK++ATLHDGV+L+Y++G+
Sbjct: 76  NYRALMPWLSIPFSDLETKKALDRKFNIEGVPCLVILQPKDDKEEATLHDGVDLLYRFGV 135

Query: 173 RAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTVGLY 232
           +AFPFTKE+LEEL+ +EKEKHE QTL NLLTNHDR YL  HP  ++VPV+SL+GKT+GL+
Sbjct: 136 QAFPFTKERLEELKMQEKEKHESQTLTNLLTNHDRDYLFAHPAPKQVPVASLIGKTIGLF 195

Query: 233 FSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPW 292
           FSA+WC P  KF PKL+SIY KIKQ L E+    EDFE+VFVSTDRDQ  F+SYF TMPW
Sbjct: 196 FSAQWCRPGMKFTPKLISIYHKIKQMLRERES--EDFEIVFVSTDRDQEGFDSYFNTMPW 253

Query: 293 LALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEF 352
           LALPFGDPTIK LTKYFDVQGIPCL+IIGP GKT+TK GRNLINLYQENAYPFTEAK+E 
Sbjct: 254 LALPFGDPTIKTLTKYFDVQGIPCLIIIGPNGKTITKNGRNLINLYQENAYPFTEAKVEL 313

Query: 353 LEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLECGYEV 412
           LEKQMEEE K+LPRSE+H+GH+HELNLV+EGTGGGP+ICCDCDEQGSGWAYQCLECGYEV
Sbjct: 314 LEKQMEEEFKSLPRSEYHVGHKHELNLVTEGTGGGPYICCDCDEQGSGWAYQCLECGYEV 373

Query: 413 HPKCVRAVDRGSMIQR 428
           HPKCVR V+ GS   R
Sbjct: 374 HPKCVRVVEPGSTRAR 389

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519962|ref|XP_004167003.1| PREDICTED: probable nucleoredoxin 2-like [Cucumis sativus]

 Score =  594 bits (1531), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 285/420 (67%), Positives = 343/420 (81%), Gaps = 12/420 (2%)

Query: 9   EDEEQLMTTNGSSISEHQKISTSSRFSSLLASKDRDYLLNQHGTQVKVSDLEGKVTALYF 68
           +DE Q +T +GS          SSRFSSLLAS DRDYLL+  G QVKVS+L+GKV  LYF
Sbjct: 2   KDENQALTNSGSC--------RSSRFSSLLASGDRDYLLSPTGAQVKVSNLDGKVLGLYF 53

Query: 69  SANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDL 128
           SANWYPPC NF  +LV  YE+L++NGS+FEVV+VSSDED +AFN YRA MPW A+P+SDL
Sbjct: 54  SANWYPPCRNFNQILVRTYEKLQDNGSNFEVVYVSSDEDSDAFNEYRASMPWPAIPFSDL 113

Query: 129 ETKKALNRKFDIEGIPCLVVLQPYDDKDD-ATLHDGVELIYKYGIRAFPFTKEKLEELQK 187
           ETK ALNRKF IEGIPCL++LQP + KD+ ATLH+GVE++Y+YG+ AFPFT+E+LE+L++
Sbjct: 114 ETKIALNRKFGIEGIPCLIILQPRESKDETATLHEGVEVVYRYGVDAFPFTQERLEQLKE 173

Query: 188 EEKEKHERQTLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPK 247
           E++EK E QTL+ LLTN+ R YL  H   ++VPV SLVGKTVGLYFSA+WC+P   F PK
Sbjct: 174 EDREKEENQTLVTLLTNNYRDYLFAHSFPKQVPVVSLVGKTVGLYFSAKWCLP-GMFTPK 232

Query: 248 LLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTK 307
           L+S+Y KIK+ +  K D  EDFE+VFVS+DRD+ SF SYFG+MPWL LP+GDP IKEL K
Sbjct: 233 LISVYSKIKRMVEMKED--EDFEIVFVSSDRDEDSFHSYFGSMPWLGLPYGDPMIKELAK 290

Query: 308 YFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPRS 367
           +FDVQGIPCL+I+ P GKT+TKQGRNLINLY+ENAYPFTEA+LE L K+M EEAK LP S
Sbjct: 291 HFDVQGIPCLIILAPNGKTITKQGRNLINLYRENAYPFTEARLEELVKEMGEEAKKLPTS 350

Query: 368 EFHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLECGYEVHPKCVRAVDRGSMIQ 427
             H+GHRHELNLVSEG GGGPFICC+C+EQGSGWAYQCLECG+EVHPKCV   +R S I 
Sbjct: 351 VRHVGHRHELNLVSEGNGGGPFICCECNEQGSGWAYQCLECGFEVHPKCVEMNNRNSPIN 410

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437178|ref|XP_004136369.1| PREDICTED: probable nucleoredoxin 2-like [Cucumis sativus]

 Score =  591 bits (1524), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 284/420 (67%), Positives = 342/420 (81%), Gaps = 12/420 (2%)

Query: 9   EDEEQLMTTNGSSISEHQKISTSSRFSSLLASKDRDYLLNQHGTQVKVSDLEGKVTALYF 68
           +DE Q +T +GS          SSRFSSLLAS  RDYLL+  G QVKVS+L+GKV  LYF
Sbjct: 2   KDENQALTNSGSC--------RSSRFSSLLASGGRDYLLSPTGAQVKVSNLDGKVLGLYF 53

Query: 69  SANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDL 128
           SANWYPPC NF  +LV  YE+L++NGS+FEVV+VSSDED +AFN YRA MPW A+P+SDL
Sbjct: 54  SANWYPPCRNFNQILVRTYEKLQDNGSNFEVVYVSSDEDSDAFNEYRASMPWPAIPFSDL 113

Query: 129 ETKKALNRKFDIEGIPCLVVLQPYDDKDD-ATLHDGVELIYKYGIRAFPFTKEKLEELQK 187
           ETK ALNRKF IEGIPCL++LQP + KD+ ATLH+GVE++Y+YG+ AFPFT+E+LE+L++
Sbjct: 114 ETKIALNRKFGIEGIPCLIILQPRESKDETATLHEGVEVVYRYGVDAFPFTQERLEQLKE 173

Query: 188 EEKEKHERQTLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPK 247
           E++EK E QTL+ LLTN+ R YL  H   ++VPV SLVGKTVGLYFSA+WC+P   F PK
Sbjct: 174 EDREKEENQTLVTLLTNNYRDYLFAHSFPKQVPVVSLVGKTVGLYFSAKWCLP-GMFTPK 232

Query: 248 LLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTK 307
           L+S+Y KIK+ +  K D  EDFE+VFVS+DRD+ SF SYFG+MPWL LP+GDP IKEL K
Sbjct: 233 LISVYSKIKRMVEMKED--EDFEIVFVSSDRDEDSFHSYFGSMPWLGLPYGDPMIKELAK 290

Query: 308 YFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPRS 367
           +FDVQGIPCL+I+ P GKT+TKQGRNLINLY+ENAYPFTEA+LE L K+M EEAK LP S
Sbjct: 291 HFDVQGIPCLIILAPNGKTITKQGRNLINLYRENAYPFTEARLEELVKEMGEEAKKLPTS 350

Query: 368 EFHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLECGYEVHPKCVRAVDRGSMIQ 427
             H+GHRHELNLVSEG GGGPFICC+C+EQGSGWAYQCLECG+EVHPKCV   +R S I 
Sbjct: 351 VRHVGHRHELNLVSEGNGGGPFICCECNEQGSGWAYQCLECGFEVHPKCVEMNNRNSPIN 410

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509102|ref|XP_003523291.1| PREDICTED: probable nucleoredoxin 2-like [Glycine max]

 Score =  567 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 269/392 (68%), Positives = 327/392 (83%), Gaps = 4/392 (1%)

Query: 33  RFSSLLASKDRDYLLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRN 92
           +FS LLAS+DRDYLL+  G QVKVSDLEGKV  L F+ANWYPPC  FT VL  +YEEL++
Sbjct: 22  KFSHLLASQDRDYLLSPTGAQVKVSDLEGKVVGLLFAANWYPPCRGFTQVLAGIYEELKS 81

Query: 93  NGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPY 152
               FE+V+VSSDEDLNAFN++   MPW+A+P+SDLETKK+L RKFD+E +PCL++LQP 
Sbjct: 82  RVPQFEIVYVSSDEDLNAFNSFYGSMPWIAIPFSDLETKKSLTRKFDVEAVPCLILLQPD 141

Query: 153 DDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLG 212
           D K+ AT+ DGVELIY+YGI+A+PF+K++LE+LQKE+K K + QTL NLL NH R Y+L 
Sbjct: 142 DRKEHATVRDGVELIYRYGIQAYPFSKDRLEQLQKEDKVKRDNQTLTNLLANHHRDYVLS 201

Query: 213 HPPD--EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFE 270
           H     +KVPV+SLVGKT+GLYFSA WC+PC KF PKL+S+Y+KIK  L EKG+  EDFE
Sbjct: 202 HTHTGLKKVPVASLVGKTIGLYFSAEWCVPCAKFTPKLISVYEKIKHELAEKGE--EDFE 259

Query: 271 VVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 330
           VV +S+DRDQ SF+SY+ TMPWLALPFGDP IK L ++++VQGIP LVIIGP+GKT+T  
Sbjct: 260 VVLISSDRDQASFDSYYSTMPWLALPFGDPEIKNLVRHYNVQGIPWLVIIGPDGKTITVH 319

Query: 331 GRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFI 390
           GR+LINLYQENAYPFT+AK+E LEKQ+EEEAK LP   +H GHRH+LNLVS+G GGGPFI
Sbjct: 320 GRSLINLYQENAYPFTKAKVEELEKQLEEEAKGLPALVYHQGHRHDLNLVSDGNGGGPFI 379

Query: 391 CCDCDEQGSGWAYQCLECGYEVHPKCVRAVDR 422
           CC CDEQGS WAYQCL+CGYEVHPKCVR V+R
Sbjct: 380 CCVCDEQGSSWAYQCLQCGYEVHPKCVRTVER 411

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255641294|gb|ACU20924.1| unknown [Glycine max]

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 268/392 (68%), Positives = 327/392 (83%), Gaps = 4/392 (1%)

Query: 33  RFSSLLASKDRDYLLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRN 92
           +FS LLAS+DRDYLL+  G QVKVSDLEGKV  L F+ANWYPPC  FT VL  +YEEL++
Sbjct: 22  KFSHLLASQDRDYLLSPTGAQVKVSDLEGKVVGLLFAANWYPPCRGFTQVLAGIYEELKS 81

Query: 93  NGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPY 152
               FE+V+VSSDEDLNAFN++   MPW+A+P+SDLETKK+L RKFD+E +PCL++LQP 
Sbjct: 82  RVPQFEIVYVSSDEDLNAFNSFYGSMPWIAIPFSDLETKKSLTRKFDVEAVPCLILLQPD 141

Query: 153 DDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLG 212
           D K+ AT+ DG+ELIY+YGI+A+PF+K++LE+LQKE+K K + QTL NLL NH R Y+L 
Sbjct: 142 DRKEHATVRDGIELIYRYGIQAYPFSKDRLEQLQKEDKVKRDNQTLTNLLANHHRDYVLS 201

Query: 213 HPPD--EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFE 270
           H     +KVPV+SLVGKT+GLYFSA WC+PC KF PKL+S+Y+KIK  L EKG+  EDFE
Sbjct: 202 HTHTGLKKVPVASLVGKTIGLYFSAEWCVPCAKFTPKLISVYEKIKHELAEKGE--EDFE 259

Query: 271 VVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 330
           VV +S+DRDQ SF+SY+ TMPWLALPFGDP IK L ++++VQGIP LVIIGP+GKT+T  
Sbjct: 260 VVLISSDRDQASFDSYYSTMPWLALPFGDPEIKNLVRHYNVQGIPWLVIIGPDGKTITVH 319

Query: 331 GRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFI 390
           GR+LINLYQENAYPFT+AK+E LEKQ+EEEAK LP   +H GHRH+LNLVS+G GGGPFI
Sbjct: 320 GRSLINLYQENAYPFTKAKVEELEKQLEEEAKGLPALVYHQGHRHDLNLVSDGNGGGPFI 379

Query: 391 CCDCDEQGSGWAYQCLECGYEVHPKCVRAVDR 422
           CC CDEQGS WAYQCL+CGYEVHPKCVR V+R
Sbjct: 380 CCVCDEQGSSWAYQCLQCGYEVHPKCVRTVER 411

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357467067|ref|XP_003603818.1| Nucleoredoxin [Medicago truncatula] gi|355492866|gb|AES74069.1| Nucleoredoxin [Medicago truncatula]

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 275/426 (64%), Positives = 338/426 (79%), Gaps = 6/426 (1%)

Query: 1   MRNEVR--LEEDEEQLMTTNGSSISEHQKISTSS-RFSSLLASKDRDYLLNQHGTQVKVS 57
           MR E++       + ++ +NG+ + E ++ + SS +FS LLASKDRD+LL+  GTQVK+S
Sbjct: 1   MRMEMKGGTTTTTQAVVNSNGNFVEEEEEEAVSSFKFSYLLASKDRDFLLSSTGTQVKIS 60

Query: 58  DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRAC 117
           +LEGKV  L F+ANWYPPC  FT +L+ +YE+L++N   FE+V+VSSDEDL+AFN +   
Sbjct: 61  ELEGKVVGLLFAANWYPPCRGFTQLLIGIYEQLKSNIPQFEIVYVSSDEDLDAFNGFYGN 120

Query: 118 MPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPF 177
           MPWLA+P+SDLETKKALNRK+D+EGIPCLV+LQP   K +ATL DGVELIY+YG++A+PF
Sbjct: 121 MPWLAIPFSDLETKKALNRKYDVEGIPCLVMLQPDHSKGEATLRDGVELIYRYGVQAYPF 180

Query: 178 TKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPD---EKVPVSSLVGKTVGLYFS 234
           +KE+LE+L   E+EK E QTL NLL N+ R Y+L H       +VPV+SLVGKT+GLYFS
Sbjct: 181 SKERLEQLHVAEREKLENQTLANLLANNHRDYVLSHTGTGLLTQVPVASLVGKTIGLYFS 240

Query: 235 ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLA 294
           A WC+PC KF PKL+++YQ IKQ L EK D  EDFE+V VS DRDQ SF+SY+  MPWLA
Sbjct: 241 AGWCVPCTKFTPKLINVYQIIKQELAEKQDPHEDFEIVLVSNDRDQESFDSYYNIMPWLA 300

Query: 295 LPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLE 354
           LPFGDP IK L ++FDVQGIPCLVIIGP+GKT+T  GRNLINLYQENAYPFT +K+E LE
Sbjct: 301 LPFGDPEIKNLARHFDVQGIPCLVIIGPDGKTITIHGRNLINLYQENAYPFTASKVEQLE 360

Query: 355 KQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLECGYEVHP 414
           KQ+EEEAK+LP    H GH H LNLVS+G GGGPFICC CDEQGS WAYQCL+CGYEVHP
Sbjct: 361 KQLEEEAKDLPNLVHHEGHHHGLNLVSDGNGGGPFICCVCDEQGSNWAYQCLQCGYEVHP 420

Query: 415 KCVRAV 420
           KCV  V
Sbjct: 421 KCVTTV 426

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517692|ref|XP_003527520.1| PREDICTED: probable nucleoredoxin 2-like isoform 1 [Glycine max]

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 262/392 (66%), Positives = 322/392 (82%), Gaps = 4/392 (1%)

Query: 33  RFSSLLASKDRDYLLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRN 92
           +FS LLAS+DRDYLL+  G QVKVSDLEG+V  L F+ANWYPPC  FT +LV +YEEL++
Sbjct: 17  KFSHLLASQDRDYLLSPTGAQVKVSDLEGRVVGLLFAANWYPPCRGFTQILVGIYEELKS 76

Query: 93  NGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPY 152
                E+V+VSSDE+L+AFN++   MPWLA+P+SDLETKK+L RK+D+E +PCL++LQP 
Sbjct: 77  RVPQLEIVYVSSDENLDAFNSFYGNMPWLAIPFSDLETKKSLTRKYDVEAVPCLILLQPD 136

Query: 153 DDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLG 212
           D K+  T+ DGVELIY+YGI+A+PF+ E+LE+LQKE+K K + QTL NLL NH R Y+L 
Sbjct: 137 DRKEHVTVRDGVELIYRYGIQAYPFSNERLEQLQKEDKVKRDNQTLTNLLANHHRDYVLS 196

Query: 213 HPPD--EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFE 270
           H     +KVPV+ LVGKT+GLYFSA WC+PC KF PKL+S+Y+KIK  L  KG+  EDFE
Sbjct: 197 HTHTGLKKVPVAWLVGKTIGLYFSAEWCVPCAKFTPKLISVYEKIKHELAGKGE--EDFE 254

Query: 271 VVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 330
           VV +S+DRDQ SF+SY+ TMPWLALPFGDP IK L ++++VQGIP LVIIGP+GKT+T  
Sbjct: 255 VVLISSDRDQASFDSYYSTMPWLALPFGDPEIKNLVRHYNVQGIPWLVIIGPDGKTITVH 314

Query: 331 GRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFI 390
           GR+LINLYQENAYPFT AK+E LEKQ+EEEAK LP   +H GHRH+LNLVS+G GGGPFI
Sbjct: 315 GRSLINLYQENAYPFTNAKVEELEKQLEEEAKGLPALVYHEGHRHDLNLVSDGNGGGPFI 374

Query: 391 CCDCDEQGSGWAYQCLECGYEVHPKCVRAVDR 422
           CC CDEQGS WAYQCL+CGYEVHPKCVR V+R
Sbjct: 375 CCVCDEQGSSWAYQCLQCGYEVHPKCVRTVER 406

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517694|ref|XP_003527521.1| PREDICTED: probable nucleoredoxin 2-like isoform 2 [Glycine max]

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 263/415 (63%), Positives = 323/415 (77%), Gaps = 27/415 (6%)

Query: 33  RFSSLLASKDRDYLLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRN 92
           +FS LLAS+DRDYLL+  G QVKVSDLEG+V  L F+ANWYPPC  FT +LV +YEEL++
Sbjct: 17  KFSHLLASQDRDYLLSPTGAQVKVSDLEGRVVGLLFAANWYPPCRGFTQILVGIYEELKS 76

Query: 93  NGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPY 152
                E+V+VSSDE+L+AFN++   MPWLA+P+SDLETKK+L RK+D+E +PCL++LQP 
Sbjct: 77  RVPQLEIVYVSSDENLDAFNSFYGNMPWLAIPFSDLETKKSLTRKYDVEAVPCLILLQPD 136

Query: 153 DDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLG 212
           D K+  T+ DGVELIY+YGI+A+PF+ E+LE+LQKE+K K + QTL NLL NH R Y+L 
Sbjct: 137 DRKEHVTVRDGVELIYRYGIQAYPFSNERLEQLQKEDKVKRDNQTLTNLLANHHRDYVLS 196

Query: 213 H--------------------PPD-----EKVPVSSLVGKTVGLYFSARWCIPCEKFMPK 247
           H                    P D      +VPV+ LVGKT+GLYFSA WC+PC KF PK
Sbjct: 197 HTHTGLKKFYLNCMQRIMDPVPGDGCCSCTQVPVAWLVGKTIGLYFSAEWCVPCAKFTPK 256

Query: 248 LLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTK 307
           L+S+Y+KIK  L  KG+  EDFEVV +S+DRDQ SF+SY+ TMPWLALPFGDP IK L +
Sbjct: 257 LISVYEKIKHELAGKGE--EDFEVVLISSDRDQASFDSYYSTMPWLALPFGDPEIKNLVR 314

Query: 308 YFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPRS 367
           +++VQGIP LVIIGP+GKT+T  GR+LINLYQENAYPFT AK+E LEKQ+EEEAK LP  
Sbjct: 315 HYNVQGIPWLVIIGPDGKTITVHGRSLINLYQENAYPFTNAKVEELEKQLEEEAKGLPAL 374

Query: 368 EFHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLECGYEVHPKCVRAVDR 422
            +H GHRH+LNLVS+G GGGPFICC CDEQGS WAYQCL+CGYEVHPKCVR V+R
Sbjct: 375 VYHEGHRHDLNLVSDGNGGGPFICCVCDEQGSSWAYQCLQCGYEVHPKCVRTVER 429

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	428
TAIR|locus:2195623	578	AT1G60420 [Arabidopsis thalian	0.834	0.617	0.428	2.7e-75
TAIR|locus:2128141	392	AT4G31240 [Arabidopsis thalian	0.836	0.913	0.395	2.7e-68
MGI|MGI:109331	435	Nxn "nucleoredoxin" [Mus muscu	0.303	0.298	0.416	5.2e-23
RGD|1310489	435	Nxn "nucleoredoxin" [Rattus no	0.303	0.298	0.416	1.4e-22
UNIPROTKB|A6QLU8	435	NXN "Nucleoredoxin" [Bos tauru	0.303	0.298	0.416	7.1e-23
UNIPROTKB|Q6DKJ4	435	NXN "Nucleoredoxin" [Homo sapi	0.303	0.298	0.409	1.9e-22
UNIPROTKB|Q6GM16	414	nxn "Nucleoredoxin" [Xenopus l	0.301	0.311	0.398	7.3e-21
ZFIN|ZDB-GENE-050522-75	418	nxn "nucleoredoxin" [Danio rer	0.252	0.258	0.427	1.2e-30
UNIPROTKB|I3LEF2	328	NXN "Uncharacterized protein"	0.303	0.396	0.416	2.6e-24
UNIPROTKB|F1NG23	328	NXN "Uncharacterized protein"	0.301	0.393	0.406	7.3e-23

TAIR|locus:2195623 AT1G60420 [Arabidopsis thaliana (taxid:3702)]

 Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
 Identities = 161/376 (42%), Positives = 223/376 (59%)

Query:    43 RDYLLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFV 102
             RD++++  G +V VS+LEGK   L FS   Y  C   T  LV+ Y +L+ N  DFE+V +
Sbjct:   185 RDFVISPDGNKVPVSELEGKTIGLLFSVASYRKCTELTPKLVEFYTKLKENKEDFEIVLI 244

Query:   103 SSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 162
             S ++D  +FN      PWLA+P++D    K L R F +  +P LV+L P    D  T H 
Sbjct:   245 SLEDDEESFNQDFKTKPWLALPFNDKSGSK-LARHFMLSTLPTLVILGP----DGKTRHS 299

Query:   163 GV-ELIYKYGIRAFPFTXXXXXXXXXXXXXXXXRQTLINLLTNHDRGYLLGHPPDEKVPV 221
              V E I  YG+ A+PFT                 QTL +LL + D  Y+LG     KV V
Sbjct:   300 NVAEAIDDYGVLAYPFTPEKFQELKELEKAKVEAQTLESLLVSGDLNYVLGKD-GAKVLV 358

Query:   222 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQT 281
             S LVGKT+ +YFSA WC PC  F PKL+ +Y++IK    E+ +A   FE++F+S+DRDQ 
Sbjct:   359 SDLVGKTILMYFSAHWCPPCRAFTPKLVEVYKQIK----ERNEA---FELIFISSDRDQE 411

Query:   282 SFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQEN 341
             SF+ Y+  MPWLALPFGDP    L K F V GIP L  +GP G+TVTK+ R+L+  +  +
Sbjct:   412 SFDEYYSQMPWLALPFGDPRKASLAKTFKVGGIPMLAALGPTGQTVTKEARDLVVAHGAD 471

Query:   342 AYPFTEAKLEFLEKQMEEEAKNLPRSEFHIGHR-HELNLVSEGTGGGPFICCDCDEQGSG 400
             AYPFTE +L+ +E + +E AK+ P+   H+ H  HEL L    T    + C  C+E+G+ 
Sbjct:   472 AYPFTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELEL----TRVQVYTCDKCEEEGTI 527

Query:   401 WAYQCLECGYEVHPKC 416
             W+Y C EC +++H KC
Sbjct:   528 WSYHCDECDFDLHAKC 543

GO:0016209 "antioxidant activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009860 "pollen tube growth" evidence=IMP

GO:0010183 "pollen tube guidance" evidence=IMP

GO:0080092 "regulation of pollen tube growth" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2128141 AT4G31240 [Arabidopsis thaliana (taxid:3702)]

 Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
 Identities = 148/374 (39%), Positives = 209/374 (55%)

Query:    44 DYLLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS 103
             ++LL+ H  +V +  + GK   L+FSA W  PC +FT  L+ +YE L+N G + E++FVS
Sbjct:    27 EFLLS-HSGEVPLEYIHGKTICLFFSAIWCRPCKDFTPELIKLYENLQNRGEELEIIFVS 85

Query:   104 SDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 163
              D D+ +F  +  CMPWLAVP++ L     L  K+ I  IP LV L  Y D + +   D 
Sbjct:    86 FDHDMTSFYEHFWCMPWLAVPFN-LSLLNKLRDKYGISRIPSLVPL--YSD-EISVAEDV 141

Query:   164 VELIYKYGIRAFPFTXXXXXXXXXXXXXXXXRQTLINLLTNHDRGYLLGHPPDEKVPVSS 223
             + LI  YG  AFPFT                   L  LLT+  R Y++      KV VS 
Sbjct:   142 IGLIEDYGSEAFPFTKKRKEELKAIDDSKRLGGQLEKLLTHESRNYVVARN-GSKVLVSK 200

Query:   224 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSF 283
             LVGKT+GLYF A WC P   F  +L+ +Y ++     +KG     FEV+ +STDRD   F
Sbjct:   201 LVGKTIGLYFGAHWCPPFRSFTSQLVDVYNELATT--DKGS----FEVILISTDRDSREF 254

Query:   284 ESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAY 343
                   MPWLA+P+ D T ++L + F+V+ IP LVIIGPE KTVT   R +++LY   ++
Sbjct:   255 NINMTNMPWLAIPYEDRTRQDLCRIFNVKLIPALVIIGPEEKTVTTNAREMVSLYGSRSF 314

Query:   344 PFTEAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGSGWAY 403
             PFTE+++  L+  +++E  +LPR      H HEL L         ++C  C +QG  WA+
Sbjct:   315 PFTESRIVELKACLKKEGDSLPRKVKDNKHEHELKLDMAKA----YVCDFCKKQGRFWAF 370

Query:   404 QCLECGYEVHPKCV 417
              C  C Y++HP CV
Sbjct:   371 SCNACDYDLHPTCV 384

GO:0005634 "nucleus" evidence=ISM

GO:0016209 "antioxidant activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

MGI|MGI:109331 Nxn "nucleoredoxin" [Mus musculus (taxid:10090)]

 Score = 280 (103.6 bits), Expect = 5.2e-23, P = 5.2e-23
 Identities = 55/132 (41%), Positives = 80/132 (60%)

Query:    46 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 105
             LL  +G  ++ S LEG    +YFSA+W PPC + T VLV+ Y +++  G +FE++FVS+D
Sbjct:   178 LLRNNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQEFEIIFVSAD 237

Query:   106 EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVE 165
                 +F  Y + MPWLAVPY+D   +  LNR + I+GIP L+VL P  +    T    VE
Sbjct:   238 RSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEV--ITRQGRVE 295

Query:   166 LIYKYGIRAFPF 177
             ++     R FP+
Sbjct:   296 VLNDEDCREFPW 307

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IMP

GO:0031397 "negative regulation of protein ubiquitination" evidence=IMP

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0072358 "cardiovascular system development" evidence=IMP

RGD|1310489 Nxn "nucleoredoxin" [Rattus norvegicus (taxid:10116)]

 Score = 277 (102.6 bits), Expect = 1.4e-22, P = 1.4e-22
 Identities = 55/132 (41%), Positives = 79/132 (59%)

Query:    46 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 105
             LL  +G  ++ S LEG    +YFSA+W PPC + T VLV+ Y +++  G  FE++FVS+D
Sbjct:   178 LLRNNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEIIFVSAD 237

Query:   106 EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVE 165
                 +F  Y + MPWLAVPY+D   +  LNR + I+GIP L+VL P  +    T    VE
Sbjct:   238 RSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEV--ITRQGRVE 295

Query:   166 LIYKYGIRAFPF 177
             ++     R FP+
Sbjct:   296 VLNDEDCREFPW 307

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=ISO

GO:0031397 "negative regulation of protein ubiquitination" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

GO:0072358 "cardiovascular system development" evidence=ISO

UNIPROTKB|A6QLU8 NXN "Nucleoredoxin" [Bos taurus (taxid:9913)]

 Score = 279 (103.3 bits), Expect = 7.1e-23, P = 7.1e-23
 Identities = 55/132 (41%), Positives = 80/132 (60%)

Query:    46 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 105
             LL  +G  ++ S LEG    +YFSA+W PPC + T VLV+ Y +++  G  FE++FVS+D
Sbjct:   178 LLRSNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEIIFVSAD 237

Query:   106 EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVE 165
                ++F  Y + MPWLAVPY+D   +  LNR + I+GIP L+VL P  +    T    VE
Sbjct:   238 RSEDSFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEV--ITRQGRVE 295

Query:   166 LIYKYGIRAFPF 177
             ++     R FP+
Sbjct:   296 VLNDEDCRGFPW 307

GO:0031397 "negative regulation of protein ubiquitination" evidence=ISS

GO:0072358 "cardiovascular system development" evidence=ISS

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=ISS

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

UNIPROTKB|Q6DKJ4 NXN "Nucleoredoxin" [Homo sapiens (taxid:9606)]

 Score = 276 (102.2 bits), Expect = 1.9e-22, P = 1.9e-22
 Identities = 54/132 (40%), Positives = 80/132 (60%)

Query:    46 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 105
             LL  +G  ++ S LEG    +YFSA+W PPC + T VLV+ Y +++  G +FE++FVS+D
Sbjct:   178 LLRNNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQNFEIIFVSAD 237

Query:   106 EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVE 165
                 +F  Y + MPWLAVPY+D   +  LNR + I+GIP L++L P  +    T    VE
Sbjct:   238 RSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIMLDPQGEV--ITRQGRVE 295

Query:   166 LIYKYGIRAFPF 177
             ++     R FP+
Sbjct:   296 VLNDEDCREFPW 307

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=ISS

GO:0031397 "negative regulation of protein ubiquitination" evidence=ISS

GO:0072358 "cardiovascular system development" evidence=ISS

UNIPROTKB|Q6GM16 nxn "Nucleoredoxin" [Xenopus laevis (taxid:8355)]

 Score = 263 (97.6 bits), Expect = 7.3e-21, P = 7.3e-21
 Identities = 53/133 (39%), Positives = 77/133 (57%)

Query:    46 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 105
             L+  +    + S LEG    +YFSA W PPC + T VLV+ Y +++ +G  FE+V VS+D
Sbjct:   157 LIRNNSQSQESSTLEGSYVGIYFSAYWCPPCRSLTRVLVESYRKIKESGQKFEIVLVSAD 216

Query:   106 EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG-V 164
                 +F  Y + MPWLAVPYSD   +  LNR + I+GIP L++L P   K +     G V
Sbjct:   217 RSEESFKQYFSEMPWLAVPYSDEARRSRLNRLYGIQGIPNLIILDP---KGEVITRQGRV 273

Query:   165 ELIYKYGIRAFPF 177
             E++     + FP+
Sbjct:   274 EVLRDIDCKEFPW 286

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=ISS

GO:0031397 "negative regulation of protein ubiquitination" evidence=ISS

GO:0072358 "cardiovascular system development" evidence=ISS

ZFIN|ZDB-GENE-050522-75 nxn "nucleoredoxin" [Danio rerio (taxid:7955)]

 Score = 253 (94.1 bits), Expect = 1.2e-30, Sum P(2) = 1.2e-30
 Identities = 50/117 (42%), Positives = 72/117 (61%)

Query:   222 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQT 281
             ++L G  VG+YFSA WC PC      L+  Y+K+K    E G   + FE+VFVS DR + 
Sbjct:   172 TALEGSYVGVYFSAHWCPPCRSLTRVLVESYRKVK----ETG---QKFEIVFVSADRSEE 224

Query:   282 SFESYFGTMPWLALPFGDPTIKE-LTKYFDVQGIPCLVIIGPEGKTVTKQGR-NLIN 336
             SF  YF  MPWLA+P+ D   +  L + + +QGIP L+++  EG  +T+QGR  ++N
Sbjct:   225 SFTQYFSEMPWLAVPYSDEARRSRLNRLYGIQGIPTLILLDTEGHMITRQGRVEILN 281

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0031397 "negative regulation of protein ubiquitination" evidence=ISS

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=ISS

GO:0072358 "cardiovascular system development" evidence=ISS

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

UNIPROTKB|I3LEF2 NXN "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 55/132 (41%), Positives = 80/132 (60%)

Query:    46 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 105
             LL  +G  ++ S LEG    +YFSA+W PPC + T VLV+ Y +++  G  FE++FVS+D
Sbjct:    71 LLRNNGPALESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEIIFVSAD 130

Query:   106 EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVE 165
                ++F  Y + MPWLAVPY+D   +  LNR + I+GIP L+VL P  +    T    VE
Sbjct:   131 RSEDSFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEV--ITRQGRVE 188

Query:   166 LIYKYGIRAFPF 177
             ++     R FP+
Sbjct:   189 VLNDEDCRGFPW 200

GO:0072358 "cardiovascular system development" evidence=IEA

GO:0031397 "negative regulation of protein ubiquitination" evidence=IEA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

UNIPROTKB|F1NG23 NXN "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 265 (98.3 bits), Expect = 7.3e-23, P = 7.3e-23
 Identities = 54/133 (40%), Positives = 80/133 (60%)

Query:    46 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 105
             LL  +G  +  S LEG    +YFSA+W PPC + T VLV+ Y +++  G  FE++FVS+D
Sbjct:    71 LLRNNGQTLDSSALEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEILFVSAD 130

Query:   106 EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG-V 164
                ++F  Y + MPW+AVPY+D   +  LNR + I+GIP L+VL   D + +     G V
Sbjct:   131 RSEDSFKQYFSEMPWVAVPYADEARRSRLNRLYGIQGIPTLIVL---DSQGEVITRQGRV 187

Query:   165 ELIYKYGIRAFPF 177
             E++     R FP+
Sbjct:   188 EVLNDIECREFPW 200

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IEA

GO:0031397 "negative regulation of protein ubiquitination" evidence=IEA

GO:0072358 "cardiovascular system development" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0JIL1	NRX2_ORYSJ	1, ., 8, ., 1, ., 8	0.4827	0.8504	0.9238	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00015497001 SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (425 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	428
cd03009	131	cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-l	9e-54
cd03009	131	cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-l	8e-53
cd02964	132	cd02964, TryX_like_family, Tryparedoxin (TryX)-lik	2e-48
cd02964	132	cd02964, TryX_like_family, Tryparedoxin (TryX)-lik	5e-41
pfam13905	94	pfam13905, Thioredoxin_8, Thioredoxin-like	1e-26
pfam13905	94	pfam13905, Thioredoxin_8, Thioredoxin-like	5e-22
cd02966	116	cd02966, TlpA_like_family, TlpA-like family; compo	5e-11
cd03008	146	cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like	8e-11
pfam13098	105	pfam13098, Thioredoxin_2, Thioredoxin-like domain	2e-08
cd03008	146	cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like	7e-08
pfam00578	124	pfam00578, AhpC-TSA, AhpC/TSA family	3e-07
cd02966	116	cd02966, TlpA_like_family, TlpA-like family; compo	2e-06
pfam00578	124	pfam00578, AhpC-TSA, AhpC/TSA family	6e-06
PRK03147	173	PRK03147, PRK03147, thiol-disulfide oxidoreductase	2e-05
smart00109	50	smart00109, C1, Protein kinase C conserved region	5e-05
pfam08534	142	pfam08534, Redoxin, Redoxin	1e-04
cd00029	50	cd00029, C1, Protein kinase C conserved region 1 (	4e-04
cd02953	104	cd02953, DsbDgamma, DsbD gamma family; DsbD gamma	5e-04
cd02947	93	cd02947, TRX_family, TRX family; composed of two g	6e-04
cd02971	140	cd02971, PRX_family, Peroxiredoxin (PRX) family; c	0.001
pfam00130	53	pfam00130, C1_1, Phorbol esters/diacylglycerol bin	0.002
cd02968	142	cd02968, SCO, SCO (an acronym for Synthesis of Cyt	0.002
cd02950	142	cd02950, TxlA, TRX-like protein A (TxlA) family; T	0.003
pfam13098	105	pfam13098, Thioredoxin_2, Thioredoxin-like domain	0.004
COG1999	207	COG1999, COG1999, Uncharacterized protein SCO1/Sen	0.004

>gnl|CDD|239307 cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

 Score =  175 bits (445), Expect = 9e-54
 Identities = 68/139 (48%), Positives = 89/139 (64%), Gaps = 9/139 (6%)

Query: 208 GYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALE 267
            +LL +    KVPVSSL GKTVGLYFSA WC PC  F PKL+  Y+K+K    E G   +
Sbjct: 1   DFLLRNDGG-KVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLK----ESG---K 52

Query: 268 DFEVVFVSTDRDQTSFESYFGTMPWLALPFGD-PTIKELTKYFDVQGIPCLVIIGPEGKT 326
           +FE+VF+S DRD+ SF  YF  MPWLA+PF D      L + F ++GIP L+I+  +G+ 
Sbjct: 53  NFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKIEGIPTLIILDADGEV 112

Query: 327 VTKQGRNLINLYQENAYPF 345
           VT   R L+  Y  +A+PF
Sbjct: 113 VTTDARELVLEYGADAFPF 131

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the vertebrate NRX by about 100-200 amino acids, is a nuclear protein containing a redox inactive TRX-like domain between two redox active TRX domains. Both vertebrate and plant NRXs show thiol oxidoreductase activity in vitro. Their localization in the nucleus suggests a role in the redox regulation of nuclear proteins such as transcription factors. Length = 131

>gnl|CDD|239307 cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

 Score =  172 bits (438), Expect = 8e-53
 Identities = 69/134 (51%), Positives = 89/134 (66%), Gaps = 3/134 (2%)

Query: 44  DYLLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS 103
           D+LL   G +V VS LEGK   LYFSA+W PPC  FT  LV+ YE+L+ +G +FE+VF+S
Sbjct: 1   DFLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFIS 60

Query: 104 SDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 163
            D D  +FN+Y + MPWLAVP+SD E +  LNR F IEGIP L++L   D   +    D 
Sbjct: 61  WDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKIEGIPTLIIL---DADGEVVTTDA 117

Query: 164 VELIYKYGIRAFPF 177
            EL+ +YG  AFPF
Sbjct: 118 RELVLEYGADAFPF 131

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the vertebrate NRX by about 100-200 amino acids, is a nuclear protein containing a redox inactive TRX-like domain between two redox active TRX domains. Both vertebrate and plant NRXs show thiol oxidoreductase activity in vitro. Their localization in the nucleus suggests a role in the redox regulation of nuclear proteins such as transcription factors. Length = 131

>gnl|CDD|239262 cd02964, TryX_like_family, Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

 Score =  160 bits (408), Expect = 2e-48
 Identities = 63/133 (47%), Positives = 84/133 (63%), Gaps = 10/133 (7%)

Query: 216 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 275
           +  VPVS+L GKTVGLYFSA WC PC  F PKL+  Y+K+K       +  ++FE+VFVS
Sbjct: 7   EGVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLK-------EEGKNFEIVFVS 59

Query: 276 TDRDQTSFESYFGTM-PWLALPFGDPTIKE-LTKYFDVQGIPCLVIIGPEGKTVTKQGRN 333
            DR + SF  YF  M PWLA+PF D  ++E L K F V+GIP LV++ P+G  VT   R+
Sbjct: 60  RDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARD 119

Query: 334 LI-NLYQENAYPF 345
            +       A+P+
Sbjct: 120 EVEEDPGACAFPW 132

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. Length = 132

>gnl|CDD|239262 cd02964, TryX_like_family, Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

 Score =  141 bits (359), Expect = 5e-41
 Identities = 59/131 (45%), Positives = 80/131 (61%), Gaps = 7/131 (5%)

Query: 50  HGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLN 109
               V VS LEGK   LYFSA+W PPC  FT  LV+ YE+L+  G +FE+VFVS D    
Sbjct: 6   GEGVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEE 65

Query: 110 AFNNYRACM-PWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH-DGVELI 167
           +FN Y + M PWLAVP+ D E ++ L ++F +EGIP LVVL+P    D   +  +  + +
Sbjct: 66  SFNEYFSEMPPWLAVPFEDEELRELLEKQFKVEGIPTLVVLKP----DGDVVTTNARDEV 121

Query: 168 YK-YGIRAFPF 177
            +  G  AFP+
Sbjct: 122 EEDPGACAFPW 132

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. Length = 132

>gnl|CDD|222448 pfam13905, Thioredoxin_8, Thioredoxin-like

 Score =  102 bits (256), Expect = 1e-26
 Identities = 41/102 (40%), Positives = 59/102 (57%), Gaps = 11/102 (10%)

Query: 226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFES 285
           GK V LYF A WC PC  F P+L  +Y+K+K+            E+V+VS DRD+  ++ 
Sbjct: 1   GKVVLLYFWASWCPPCRAFTPELKELYEKLKKP---------KVEIVYVSLDRDEEEWKK 51

Query: 286 YFGTMP--WLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGK 325
           Y   MP  WL +PFGD    EL + + V+ IP LV++  +G+
Sbjct: 52  YLKKMPKDWLNVPFGDKERNELLRLYGVKAIPTLVLLDKDGR 93

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 94

>gnl|CDD|222448 pfam13905, Thioredoxin_8, Thioredoxin-like

 Score = 89.3 bits (222), Expect = 5e-22
 Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 5/93 (5%)

Query: 61  GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMP- 119
           GKV  LYF A+W PPC  FT  L ++YE  +      E+V+VS D D   +  Y   MP 
Sbjct: 1   GKVVLLYFWASWCPPCRAFTPELKELYE--KLKKPKVEIVYVSLDRDEEEWKKYLKKMPK 58

Query: 120 -WLAVPYSDLETKKALNRKFDIEGIPCLVVLQP 151
            WL VP+ D + +  L R + ++ IP LV+L  
Sbjct: 59  DWLNVPFGD-KERNELLRLYGVKAIPTLVLLDK 90

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 94

>gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

 Score = 59.2 bits (144), Expect = 5e-11
 Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 11/116 (9%)

Query: 216 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 275
            + V +S L GK V + F A WC PC   MP+L ++ ++ K          +  EVV V+
Sbjct: 9   GKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKD---------DGVEVVGVN 59

Query: 276 TDRDQTS-FESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 330
            D D  +  +++      +  P       EL K + V+G+P   +I  +G+   + 
Sbjct: 60  VDDDDPAAVKAFLKKYG-ITFPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRARH 114

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116

>gnl|CDD|239306 cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

 Score = 59.4 bits (144), Expect = 8e-11
 Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 6/118 (5%)

Query: 217 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNL-VEKGDALEDFEVVFVS 275
           E+  V+ L  + + L+F A     C+ F PKL   + ++     V++   L    +V+VS
Sbjct: 16  EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLA---LVYVS 72

Query: 276 TDRDQTSFESYFGTMP--WLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG 331
            D+ +   ES+   MP  WL LPF D   +EL   F V+ +P +V++ P+G  +    
Sbjct: 73  MDQSEQQQESFLKDMPKKWLFLPFEDEFRRELEAQFSVEELPTVVVLKPDGDVLAANA 130

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. Length = 146

>gnl|CDD|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 17/104 (16%)

Query: 226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFES 285
           GK V + F+   C  C+K   +LL        ++ E     ++F V++V+ D  +     
Sbjct: 5   GKPVLVVFTDPDCPYCKKLHKELLKD-----PDVQEYLK--DNFVVIYVNVDDSK----- 52

Query: 286 YFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 329
                          + KEL + + V+G P +V +  +GK V +
Sbjct: 53  -----EVTDFDGETLSEKELARKYGVRGTPTIVFLDGDGKEVAR 91

Length = 105

>gnl|CDD|239306 cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

 Score = 51.0 bits (122), Expect = 7e-08
 Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 11/127 (8%)

Query: 56  VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNN-----GSDFEVVFVSSDEDLNA 110
           V+ LE +V  L+F A   P C  F   L D +  L +       +   +V+VS D+    
Sbjct: 20  VARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQ 79

Query: 111 FNNYRACMP--WLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIY 168
             ++   MP  WL +P+ D E ++ L  +F +E +P +VVL+P     D    + V+ I 
Sbjct: 80  QESFLKDMPKKWLFLPFED-EFRRELEAQFSVEELPTVVVLKP---DGDVLAANAVDEIL 135

Query: 169 KYGIRAF 175
           + G   F
Sbjct: 136 RLGPACF 142

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. Length = 146

>gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family

 Score = 48.7 bits (117), Expect = 3e-07
 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 12/99 (12%)

Query: 46  LLNQHGTQVKVSDLEGKVTALYF-SANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS 104
           L +  G +V +SD +GK   L+F   ++ P C      L D+YEE +  G   EV+ VS 
Sbjct: 10  LPDLDGKEVSLSDYKGKWVVLFFYPKDFTPVCTTELPALADLYEEFKKLG--VEVLGVSV 67

Query: 105 D--EDLNAFNN-YRACMPWLAVPYSDLETKKALNRKFDI 140
           D  E    F        P L    SD      + + + +
Sbjct: 68  DSPESHKKFAEKLGLPFPLL----SD--PDGEVAKAYGV 100

This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 124

>gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 46  LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 105
           L +  G  V +SDL+GKV  + F A+W PPC      L  + +E +++G   EVV V+ D
Sbjct: 4   LPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDG--VEVVGVNVD 61

Query: 106 ED 107
           +D
Sbjct: 62  DD 63

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116

>gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family

 Score = 44.9 bits (107), Expect = 6e-06
 Identities = 29/119 (24%), Positives = 45/119 (37%), Gaps = 24/119 (20%)

Query: 217 EKVPVSSLVGKTVGLYF-SARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 275
           ++V +S   GK V L+F    +   C   +P L      + +   + G      EV+ VS
Sbjct: 16  KEVSLSDYKGKWVVLFFYPKDFTPVCTTELPAL----ADLYEEFKKLG-----VEVLGVS 66

Query: 276 TDR--DQTSF-ESYFGTMPWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGK 325
            D       F E      P L+    DP   E+ K + V        +    +I P+GK
Sbjct: 67  VDSPESHKKFAEKLGLPFPLLS----DPD-GEVAKAYGVLNEEEGLALRTTFVIDPDGK 120

This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 124

>gnl|CDD|179545 PRK03147, PRK03147, thiol-disulfide oxidoreductase; Provisional

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 16/114 (14%)

Query: 217 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 276
           +K+ +  L GK V L F   WC PCEK MP +  +Y K K    EKG      E++ V+ 
Sbjct: 52  KKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYK----EKG-----VEIIAVNV 102

Query: 277 DRDQTSFESY---FGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 327
           D  + + +++   +G    L  P      +++   + V  +P   +I  +GK V
Sbjct: 103 DETELAVKNFVNRYG----LTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVV 152

Length = 173

>gnl|CDD|197519 smart00109, C1, Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains)

 Score = 40.1 bits (94), Expect = 5e-05
 Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 8/51 (15%)

Query: 373 HRHELNLVSEGTGGGPFICCDCDEQ---GSGWAYQCLECGYEVHPKCVRAV 420
           H+H        T   P  CC C +          +C EC  + H KC   V
Sbjct: 1   HKHV-----FRTFTKPTFCCVCRKSIWGSFKQGLRCSECKVKCHKKCADKV 46

Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains. Length = 50

>gnl|CDD|219888 pfam08534, Redoxin, Redoxin

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 5/76 (6%)

Query: 43  RDYLLNQHGTQVKVSDLEGKVTALYF-SANWYPPCGNFTGVLVDVYEELRNNGSDFEVVF 101
               +   G  V +SD +GK   L F    + P C      L  + +  +  G   +VV 
Sbjct: 9   TLPDVALDGKTVSLSDFKGKKVVLNFWPGAFCPTCSAEHPYLEKLSKLYKAKG--VDVVA 66

Query: 102 VSSDEDLNAFNNYRAC 117
           V++  D   F      
Sbjct: 67  VNASND--PFFVMNFW 80

This family of redoxins includes peroxiredoxin, thioredoxin and glutaredoxin proteins. Length = 142

>gnl|CDD|237996 cd00029, C1, Protein kinase C conserved region 1 (C1)

 Score = 37.9 bits (88), Expect = 4e-04
 Identities = 9/42 (21%), Positives = 13/42 (30%), Gaps = 3/42 (7%)

Query: 382 EGTGGGPFICCDCDEQ---GSGWAYQCLECGYEVHPKCVRAV 420
             +   P  C  C +          +C  C  + H KC   V
Sbjct: 5   RKSFFKPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADKV 46

Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis). Length = 50

>gnl|CDD|239251 cd02953, DsbDgamma, DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 27/101 (26%), Positives = 34/101 (33%), Gaps = 30/101 (29%)

Query: 226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFES 285
           GK V + F+A WC+ C              K N           E V  S    Q + + 
Sbjct: 11  GKPVFVDFTADWCVTC--------------KVN-----------EKVVFSDPEVQAALKK 45

Query: 286 YFGTM--PWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEG 324
               +   W      DP I  L K F V G P  +  GP G
Sbjct: 46  DVVLLRADWTK---NDPEITALLKRFGVFGPPTYLFYGPGG 83

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes. Length = 104

>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

 Score = 38.3 bits (90), Expect = 6e-04
 Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 34/95 (35%)

Query: 226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFES 285
            K V + F A WC PC+   P L        + L E+       +V FV  D D+     
Sbjct: 10  AKPVVVDFWAPWCGPCKAIAPVL--------EELAEEYP-----KVKFVKVDVDEN---- 52

Query: 286 YFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVII 320
                             EL + + V+ IP  +  
Sbjct: 53  -----------------PELAEEYGVRSIPTFLFF 70

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93

>gnl|CDD|239269 cd02971, PRX_family, Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

 Score = 38.7 bits (91), Expect = 0.001
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 17/75 (22%)

Query: 46  LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGV-------LVDVYEELRNNGSDFE 98
           L    G +V +SD +GK   L+F    YP   +FT V         D+ EE    G   E
Sbjct: 7   LPATDGGEVSLSDFKGKWVVLFF----YP--KDFTPVCTTELCAFRDLAEEFAKGG--AE 58

Query: 99  VVFVSSD--EDLNAF 111
           V+ VS D      A+
Sbjct: 59  VLGVSVDSPFSHKAW 73

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a cysteine sulfenic acid intermediate. The second step of the reaction, the resolution of the intermediate, distinguishes the different types of PRXs. The presence or absence of a second cysteine (the resolving cysteine) classifies PRXs as either belonging to the 2-cys or 1-cys type. The resolving cysteine of 2-cys PRXs is either on the same chain (atypical) or on the second chain (typical) of a functional homodimer. Structural and motif analysis of this growing family supports the need for a new classification system. The peroxidase activity of PRXs is regulated in vivo by irreversible cysteine over-oxidation into a sulfinic acid, phosphorylation and limited proteolysis. Length = 140

>gnl|CDD|215738 pfam00130, C1_1, Phorbol esters/diacylglycerol binding domain (C1 domain)

 Score = 35.9 bits (83), Expect = 0.002
 Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 3/34 (8%)

Query: 391 CCDCDE---QGSGWAYQCLECGYEVHPKCVRAVD 421
           C  C E          +C  CG  VH +C   V 
Sbjct: 14  CDHCGEFLWGLGKQGLKCSWCGLNVHKRCHSLVP 47

This domain is also known as the Protein kinase C conserved region 1 (C1) domain. Length = 53

>gnl|CDD|239266 cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 20/71 (28%)

Query: 46  LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFT----------GVLVDVYEELRNNGS 95
           L +Q G  V +SDL+GK   +YF          +T            L    ++L  +G 
Sbjct: 7   LTDQDGRPVTLSDLKGKPVLVYF---------GYTHCPDVCPTTLANLAQALKQLGADGG 57

Query: 96  -DFEVVFVSSD 105
            D +VVF+S D
Sbjct: 58  DDVQVVFISVD 68

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properties of Sco1 implies that it participates in signaling events rather than functioning as a chaperone that transfers copper to COX II. Length = 142

>gnl|CDD|239248 cd02950, TxlA, TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 34/153 (22%), Positives = 57/153 (37%), Gaps = 42/153 (27%)

Query: 226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFES 285
           GK   + F A WC  C++  P +  + QK    +        +F  V ++ D  +     
Sbjct: 20  GKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQV--------NF--VMLNVDNPK----- 64

Query: 286 YFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIG----PEGKTVTKQGR-----NLIN 336
                 WL          E+ +Y  V GIP  V +      EG+++  Q +     NL  
Sbjct: 65  ------WL---------PEIDRY-RVDGIPHFVFLDREGNEEGQSIGLQPKQVLAQNLDA 108

Query: 337 LYQENAYPFTEAKLEF--LEKQMEEEAKNLPRS 367
           L      P+  A  +   L+      +++ PRS
Sbjct: 109 LVAGEPLPYANAVGQTSELKSPKNPSSQDDPRS 141

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. Length = 142

>gnl|CDD|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 17/95 (17%)

Query: 60  EGKVTALYFSANWYPPCGNFTGVLV---DVYEELRNNGSDFEVVFVSSDEDLNAFNNYRA 116
            GK   + F+    P C      L+   DV E L++N   F V++V+ D+     +    
Sbjct: 4   NGKPVLVVFTDPDCPYCKKLHKELLKDPDVQEYLKDN---FVVIYVNVDDSKEVTDFDGE 60

Query: 117 CMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQP 151
            +           ++K L RK+ + G P +V L  
Sbjct: 61  TL-----------SEKELARKYGVRGTPTIVFLDG 84

Length = 105

>gnl|CDD|224910 COG1999, COG1999, Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 46  LLNQHGTQVKVSDLEGKVTALYFSANWYPP-CGNFTGVLVDVYEELRN-NGSDFEVVFVS 103
           L +Q G    + DL+GK + ++F     P  C      L  + ++L    G D +VVF++
Sbjct: 52  LTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFIT 111

Query: 104 SDED 107
            D +
Sbjct: 112 VDPE 115

Length = 207

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	428
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.91
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.91
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.9
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.9
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.88
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.88
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	99.84
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	99.83
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.82
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	99.82
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	99.82
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	99.82
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	99.81
PTZ00056	199	glutathione peroxidase; Provisional	99.81
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	99.81
PLN02412	167	probable glutathione peroxidase	99.81
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.81
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.81
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	99.8
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	99.8
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.8
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.8
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	99.8
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	99.79
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.79
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	99.79
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.79
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	99.79
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	99.79
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	99.78
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	99.78
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	99.78
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	99.77
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	99.77
PTZ00256	183	glutathione peroxidase; Provisional	99.77
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	99.76
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.76
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	99.76
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.76
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	99.75
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	99.75
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	99.75
PTZ00056	199	glutathione peroxidase; Provisional	99.75
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.74
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	99.74
PRK13599	215	putative peroxiredoxin; Provisional	99.74
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	99.73
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	99.73
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.73
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	99.72
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.72
PTZ00102	477	disulphide isomerase; Provisional	99.72
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	99.72
PRK13190	202	putative peroxiredoxin; Provisional	99.72
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	99.72
PTZ00137	261	2-Cys peroxiredoxin; Provisional	99.71
PRK15000	200	peroxidase; Provisional	99.71
PLN02412	167	probable glutathione peroxidase	99.71
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	99.71
PRK13191	215	putative peroxiredoxin; Provisional	99.7
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	99.7
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	99.7
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	99.7
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.7
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	99.7
PTZ00253	199	tryparedoxin peroxidase; Provisional	99.69
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	99.69
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	99.69
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	99.68
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	99.68
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	99.68
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.68
PTZ00256	183	glutathione peroxidase; Provisional	99.68
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	99.67
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	99.66
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	99.66
PRK13189	222	peroxiredoxin; Provisional	99.66
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	99.66
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.66
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	99.65
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	99.64
PRK13728	181	conjugal transfer protein TrbB; Provisional	99.64
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	99.64
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	99.63
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	99.61
PRK13599	215	putative peroxiredoxin; Provisional	99.6
PRK10606	183	btuE putative glutathione peroxidase; Provisional	99.6
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.6
PRK13728	181	conjugal transfer protein TrbB; Provisional	99.6
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.6
PRK13190	202	putative peroxiredoxin; Provisional	99.59
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	99.58
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.55
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.55
PTZ00137	261	2-Cys peroxiredoxin; Provisional	99.55
PRK15000	200	peroxidase; Provisional	99.54
PRK13191	215	putative peroxiredoxin; Provisional	99.54
COG0450	194	AhpC Peroxiredoxin [Posttranslational modification	99.53
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	99.53
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	99.53
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	99.52
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.51
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	99.51
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	99.5
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.5
PRK13189	222	peroxiredoxin; Provisional	99.48
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.47
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.47
PTZ00253	199	tryparedoxin peroxidase; Provisional	99.47
PHA02278	103	thioredoxin-like protein	99.45
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.45
PRK10606	183	btuE putative glutathione peroxidase; Provisional	99.44
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.44
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.44
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.44
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.41
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	99.41
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.39
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.39
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	99.38
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.38
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.38
PRK09381	109	trxA thioredoxin; Provisional	99.37
PHA02278	103	thioredoxin-like protein	99.37
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	99.36
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	99.35
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.34
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.33
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.33
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.32
PF02630	174	SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam	99.32
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.32
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.32
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.31
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.31
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.31
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.31
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.3
PRK10996	139	thioredoxin 2; Provisional	99.3
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	99.29
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.27
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	99.27
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.27
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	99.27
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.26
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.25
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.25
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.25
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	99.25
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.24
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.24
PF02630	174	SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam	99.24
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.24
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.24
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.23
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	99.23
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.23
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.23
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.22
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.21
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.21
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.21
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.21
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.21
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.2
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.19
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.19
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.19
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.18
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.18
PTZ00051	98	thioredoxin; Provisional	99.18
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.17
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.17
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.17
PTZ00062	204	glutaredoxin; Provisional	99.16
PRK09381	109	trxA thioredoxin; Provisional	99.16
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.16
PTZ00062	204	glutaredoxin; Provisional	99.15
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.15
PRK10996	139	thioredoxin 2; Provisional	99.14
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.14
KOG0855	211	consensus Alkyl hydroperoxide reductase, thiol spe	99.14
COG1999	207	Uncharacterized protein SCO1/SenC/PrrC, involved i	99.14
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.13
KOG2792	280	consensus Putative cytochrome C oxidase assembly p	99.12
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	99.12
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.11
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.11
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	99.11
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.11
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.1
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.1
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.09
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.09
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.08
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.08
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.08
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	99.08
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	99.07
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.06
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.06
COG0386	162	BtuE Glutathione peroxidase [Posttranslational mod	99.06
COG0450	194	AhpC Peroxiredoxin [Posttranslational modification	99.05
PTZ00051	98	thioredoxin; Provisional	99.05
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.05
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	99.05
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	99.04
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.03
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.03
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.02
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.02
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.0
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.0
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	98.99
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	98.98
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	98.97
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	98.96
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	98.95
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	98.95
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	98.94
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	98.93
KOG0852	196	consensus Alkyl hydroperoxide reductase, thiol spe	98.92
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	98.9
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	98.9
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	98.89
PLN02309	457	5'-adenylylsulfate reductase	98.88
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	98.88
cd02947	93	TRX_family TRX family; composed of two groups: Gro	98.87
KOG0855	211	consensus Alkyl hydroperoxide reductase, thiol spe	98.87
COG1999	207	Uncharacterized protein SCO1/SenC/PrrC, involved i	98.86
PTZ00102	477	disulphide isomerase; Provisional	98.86
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	98.85
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	98.82
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	98.82
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	98.81
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	98.8
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	98.79
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	98.75
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	98.75
KOG1651	171	consensus Glutathione peroxidase [Posttranslationa	98.73
COG2077	158	Tpx Peroxiredoxin [Posttranslational modification,	98.73
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	98.71
PLN02309	457	5'-adenylylsulfate reductase	98.7
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	98.69
PHA02125	75	thioredoxin-like protein	98.68
cd02947	93	TRX_family TRX family; composed of two groups: Gro	98.68
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	98.68
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	98.67
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	98.64
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	98.62
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	98.61
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	98.61
KOG0854	224	consensus Alkyl hydroperoxide reductase, thiol spe	98.59
PF13728	215	TraF: F plasmid transfer operon protein	98.54
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	98.53
KOG2792	280	consensus Putative cytochrome C oxidase assembly p	98.52
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	98.49
PF07649	30	C1_3: C1-like domain; InterPro: IPR011424 This sho	98.48
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	98.48
KOG4277	468	consensus Uncharacterized conserved protein, conta	98.48
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.44
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	98.44
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	98.4
COG0386	162	BtuE Glutathione peroxidase [Posttranslational mod	98.36
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	98.35
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	98.35
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	98.34
PF00255	108	GSHPx: Glutathione peroxidase; InterPro: IPR000889	98.33
PHA02125	75	thioredoxin-like protein	98.33
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	98.29
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	98.29
smart00594	122	UAS UAS domain.	98.28
KOG0852	196	consensus Alkyl hydroperoxide reductase, thiol spe	98.26
PF03107	30	C1_2: C1 domain; InterPro: IPR004146 This short do	98.24
PF00255	108	GSHPx: Glutathione peroxidase; InterPro: IPR000889	98.24
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	98.23
KOG4277	468	consensus Uncharacterized conserved protein, conta	98.23
PF13728	215	TraF: F plasmid transfer operon protein	98.2
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	98.19
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	98.15
COG2077	158	Tpx Peroxiredoxin [Posttranslational modification,	98.12
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	98.12
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	98.12
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	98.11
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	98.11
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	98.09
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	98.07
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	98.03
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	98.03
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	98.0
smart00594	122	UAS UAS domain.	97.91
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	97.89
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	97.84
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	97.81
KOG1651	171	consensus Glutathione peroxidase [Posttranslationa	97.77
COG2143	182	Thioredoxin-related protein [Posttranslational mod	97.75
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	97.73
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	97.63
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	97.63
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	97.58
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	97.57
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	97.57
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	97.51
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	97.5
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	97.48
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	97.48
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	97.48
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	97.4
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	97.39
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	97.37
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	97.35
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	97.31
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	97.3
KOG0854	224	consensus Alkyl hydroperoxide reductase, thiol spe	97.27
PRK11200	85	grxA glutaredoxin 1; Provisional	97.22
cd02340	43	ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger pre	97.16
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.16
COG2143	182	Thioredoxin-related protein [Posttranslational mod	97.12
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	97.02
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	96.95
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	96.95
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	96.89
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	96.81
PF05988	211	DUF899: Bacterial protein of unknown function (DUF	96.78
cd02339	45	ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger pre	96.68
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	96.56
cd02249	46	ZZ Zinc finger, ZZ type. Zinc finger present in dy	96.47
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	96.46
PF04592	238	SelP_N: Selenoprotein P, N terminal region; InterP	96.45
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	96.45
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	96.36
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	96.35
PRK11200	85	grxA glutaredoxin 1; Provisional	96.33
PF05176	252	ATP-synt_10: ATP10 protein; InterPro: IPR007849 Th	96.31
cd02343	48	ZZ_EF Zinc finger, ZZ type. Zinc finger present in	96.3
cd02342	43	ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger pre	96.19
KOG3425	128	consensus Uncharacterized conserved protein [Funct	96.18
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	96.13
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	96.09
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	96.07
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	96.06
KOG3425	128	consensus Uncharacterized conserved protein [Funct	96.03
COG0678	165	AHP1 Peroxiredoxin [Posttranslational modification	96.03
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	96.01
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	95.98
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	95.97
cd02334	49	ZZ_dystrophin Zinc finger, ZZ type. Zinc finger pr	95.97
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	95.93
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	95.87
cd02341	48	ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present	95.78
cd02344	45	ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present	95.69
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	95.67
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	95.64
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	95.63
PHA03050	108	glutaredoxin; Provisional	95.55
PF00569	46	ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc	95.53
PF09695	160	YtfJ_HI0045: Bacterial protein of unknown function	95.51
smart00291	44	ZnF_ZZ Zinc-binding domain, present in Dystrophin,	95.45
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	95.32
cd02335	49	ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present	95.3
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	95.25
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	95.22
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	95.15
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	95.13
PHA03050	108	glutaredoxin; Provisional	95.1
PRK10329	81	glutaredoxin-like protein; Provisional	94.9
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	94.85
COG4312	247	Uncharacterized protein conserved in bacteria [Fun	94.82
cd02345	49	ZZ_dah Zinc finger, ZZ type. Zinc finger present i	94.8
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	94.75
cd02338	49	ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger pre	94.56
KOG0913	248	consensus Thiol-disulfide isomerase and thioredoxi	94.54
PF04592	238	SelP_N: Selenoprotein P, N terminal region; InterP	94.53
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	94.52
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	94.5
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	94.47
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	94.45
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	94.37
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	94.32
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	94.24
COG1331	667	Highly conserved protein containing a thioredoxin	94.11
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	94.02
KOG4582	278	consensus Uncharacterized conserved protein, conta	93.92
PF05988	211	DUF899: Bacterial protein of unknown function (DUF	93.89
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	93.82
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	93.78
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	93.78
PF00130	53	C1_1: Phorbol esters/diacylglycerol binding domain	93.71
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	93.7
KOG1672	211	consensus ATP binding protein [Posttranslational m	93.61
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	93.29
PRK10638	83	glutaredoxin 3; Provisional	93.27
cd02337	41	ZZ_CBP Zinc finger, ZZ type. Zinc finger present i	92.99
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	92.94
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	92.83
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	92.67
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	92.64
cd00029	50	C1 Protein kinase C conserved region 1 (C1) . Cyst	92.6
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	92.46
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	92.44
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	92.41
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	92.31
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	92.08
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	91.99
PF13911	115	AhpC-TSA_2: AhpC/TSA antioxidant enzyme	91.66
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	91.64
KOG0913	248	consensus Thiol-disulfide isomerase and thioredoxi	91.49
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	91.45
PRK10329	81	glutaredoxin-like protein; Provisional	91.18
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	91.02
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	90.84
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	90.81
KOG1752	104	consensus Glutaredoxin and related proteins [Postt	90.77
KOG3507	62	consensus DNA-directed RNA polymerase, subunit RPB	90.75
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	90.71
KOG1752	104	consensus Glutaredoxin and related proteins [Postt	90.66
PRK10638	83	glutaredoxin 3; Provisional	90.5
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	90.09
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	89.64
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	89.64
KOG2603	331	consensus Oligosaccharyltransferase, gamma subunit	89.19
PRK10824	115	glutaredoxin-4; Provisional	88.49
COG4545	85	Glutaredoxin-related protein [Posttranslational mo	88.48
COG1331	667	Highly conserved protein containing a thioredoxin	88.47
COG4312	247	Uncharacterized protein conserved in bacteria [Fun	88.25
PRK10824	115	glutaredoxin-4; Provisional	88.19
smart00109	49	C1 Protein kinase C conserved region 1 (C1) domain	87.91
cd02336	45	ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present	87.81
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	87.3
PF13778	118	DUF4174: Domain of unknown function (DUF4174)	87.1
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	86.15
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	85.63
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	85.31
COG0678	165	AHP1 Peroxiredoxin [Posttranslational modification	84.98
KOG2507	506	consensus Ubiquitin regulatory protein UBXD2, cont	84.91
PF09695	160	YtfJ_HI0045: Bacterial protein of unknown function	83.62
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	83.61
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	83.44
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	83.34
KOG0541	171	consensus Alkyl hydroperoxide reductase/peroxiredo	82.96
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	82.65
KOG0541	171	consensus Alkyl hydroperoxide reductase/peroxiredo	82.54
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	80.63
KOG1672	211	consensus ATP binding protein [Posttranslational m	80.25
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	80.12

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.91  E-value=4.4e-24  Score=181.13  Aligned_cols=131  Identities=52%  Similarity=0.986  Sum_probs=120.9

Q ss_pred             CccccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCcee
Q 014225           44 DYLLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAV  123 (428)
Q Consensus        44 dfl~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~  123 (428)
                      |||.+.+|+.+++++++||+|+|+||++||++|+.++|.|+++++++++.+.++++++|++|.+.+.+++++++++|..+
T Consensus         1 ~~l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~   80 (131)
T cd03009           1 DFLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAV   80 (131)
T ss_pred             CcccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEc
Confidence            57889999999999999999999999999999999999999999999876445999999999999999999999999888


Q ss_pred             ccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccccchhhhhhcccCcccc
Q 014225          124 PYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPF  177 (428)
Q Consensus       124 ~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~~~~~~i~~~g~~~~p~  177 (428)
                      ++.+.+....+++.|++.++|+++|||+   +|+++.+++.+++..++..+|||
T Consensus        81 ~~~~~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~~~~~~~~~~~~~~~~~  131 (131)
T cd03009          81 PFSDRERRSRLNRTFKIEGIPTLIILDA---DGEVVTTDARELVLEYGADAFPF  131 (131)
T ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECC---CCCEEcccHHHHHhhcccccCCC
Confidence            8866455578999999999999999999   99999999999999999988886

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.91  E-value=4.6e-24  Score=180.99  Aligned_cols=130  Identities=51%  Similarity=1.004  Sum_probs=118.7

Q ss_pred             CcccCCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHH
Q 014225          208 GYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYF  287 (428)
Q Consensus       208 ~f~l~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~  287 (428)
                      +|..+.+|+ .+++++++||+|+|+||++||++|+.++|.|.+++++++++       +.+++|++|++|.+.+++++++
T Consensus         1 ~~l~~~~G~-~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~-------~~~~~vv~is~d~~~~~~~~~~   72 (131)
T cd03009           1 DFLLRNDGG-KVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKES-------GKNFEIVFISWDRDEESFNDYF   72 (131)
T ss_pred             CcccccCCC-CccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhc-------CCCEEEEEEECCCCHHHHHHHH
Confidence            354588999 99999999999999999999999999999999999999865       4579999999999999999999


Q ss_pred             hcCCccccccCC-cchhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCC
Q 014225          288 GTMPWLALPFGD-PTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPF  345 (428)
Q Consensus       288 ~~~~~~~~~~~~-d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~  345 (428)
                      +.++|..+|+.. +....+++.|++.++|+++|||++|+++.++++.++..+|+.+|||
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~  131 (131)
T cd03009          73 SKMPWLAVPFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF  131 (131)
T ss_pred             HcCCeeEcccCCHHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence            999988888765 5567899999999999999999999999999999999999999997

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.90  E-value=1.9e-23  Score=178.23  Aligned_cols=120  Identities=30%  Similarity=0.577  Sum_probs=106.0

Q ss_pred             EEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcC-----CCcEEEEEEecCCChHHHHHHHhcCC--Cceecc
Q 014225           53 QVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNN-----GSDFEVVFVSSDEDLNAFNNYRACMP--WLAVPY  125 (428)
Q Consensus        53 ~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~-----~~~~~ii~vs~D~~~~~~~~~~~~~~--~~~~~~  125 (428)
                      .+++++++||+|+|+|||+||+||+.++|.|.++|++++++     ..++++|+|+.|.+.+.+++|+++++  |+.+|+
T Consensus        17 ~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~   96 (146)
T cd03008          17 REIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPF   96 (146)
T ss_pred             cccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecc
Confidence            45678999999999999999999999999999999998763     23599999999999888999999987  878887


Q ss_pred             CChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccccchhhhhhcccCccc
Q 014225          126 SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFP  176 (428)
Q Consensus       126 ~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~~~~~~i~~~g~~~~p  176 (428)
                      .+. ....+.+.|++.++|+++|||+   +|+++.+++++.|..+|..+|.
T Consensus        97 ~~~-~~~~l~~~y~v~~iPt~vlId~---~G~Vv~~~~~~~i~~~g~~~~~  143 (146)
T cd03008          97 EDE-FRRELEAQFSVEELPTVVVLKP---DGDVLAANAVDEILRLGPACFR  143 (146)
T ss_pred             cch-HHHHHHHHcCCCCCCEEEEECC---CCcEEeeChHHHHHHHHHHHHH
Confidence            553 2368999999999999999999   9999999999999998876653

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.90  E-value=1.7e-23  Score=178.55  Aligned_cols=123  Identities=28%  Similarity=0.530  Sum_probs=105.0

Q ss_pred             eecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCC--cccc
Q 014225          218 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMP--WLAL  295 (428)
Q Consensus       218 ~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~--~~~~  295 (428)
                      .+++++++||+|+|+|||+|||+|++++|.|.+++++++++..  -....+++||+|+.|.+.+++++|+++++  |+.+
T Consensus        17 ~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~--~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~   94 (146)
T cd03008          17 REIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFY--VDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFL   94 (146)
T ss_pred             cccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcc--cccCCCEEEEEEECCCCHHHHHHHHHHCCCCceee
Confidence            5678899999999999999999999999999999998875300  00023699999999998888999999988  7777


Q ss_pred             ccCCcchhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccC
Q 014225          296 PFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENA  342 (428)
Q Consensus       296 ~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~  342 (428)
                      |+..+....+++.|++.++|++||||++|+|+.++++..|..+|..+
T Consensus        95 p~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~~  141 (146)
T cd03008          95 PFEDEFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPAC  141 (146)
T ss_pred             cccchHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHHHH
Confidence            87776667899999999999999999999999999988877776544

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.88  E-value=2.5e-22  Score=170.56  Aligned_cols=128  Identities=48%  Similarity=0.883  Sum_probs=112.1

Q ss_pred             cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcC-CCceec
Q 014225           46 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACM-PWLAVP  124 (428)
Q Consensus        46 l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~-~~~~~~  124 (428)
                      |+|.+ +++++++++||+++|+||++||++|+.++|.|+++++++++.+.++++++|++|.+.+.+++|++++ +|..++
T Consensus         3 ~~~~~-~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~   81 (132)
T cd02964           3 LLDGE-GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVP   81 (132)
T ss_pred             cccCC-ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeec
Confidence            45555 5899999999999999999999999999999999999998763349999999999999999999999 688888


Q ss_pred             cCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccccchhhhhh-cccCcccc
Q 014225          125 YSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYK-YGIRAFPF  177 (428)
Q Consensus       125 ~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~~~~~~i~~-~g~~~~p~  177 (428)
                      +.+......+.+.|++.++|+++|||+   +|+++.+++.+.+.. ++..+|||
T Consensus        82 ~~d~~~~~~~~~~~~v~~iPt~~lid~---~G~iv~~~~~~~~~~~~~~~~~~~  132 (132)
T cd02964          82 FEDEELRELLEKQFKVEGIPTLVVLKP---DGDVVTTNARDEVEEDPGACAFPW  132 (132)
T ss_pred             cCcHHHHHHHHHHcCCCCCCEEEEECC---CCCEEchhHHHHHHhCcccccCCC
Confidence            766444478889999999999999999   999999999877665 88888886

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.88  E-value=2.4e-22  Score=170.73  Aligned_cols=128  Identities=50%  Similarity=0.952  Sum_probs=111.5

Q ss_pred             cccCCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHh
Q 014225          209 YLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFG  288 (428)
Q Consensus       209 f~l~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~  288 (428)
                      |.+|.+ + .+++++++||+++|+||++||++|+.++|.|+++++++++.       ..+++|++|++|.+.+++++|++
T Consensus         2 ~~~~~~-~-~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~-------~~~v~vi~Vs~d~~~~~~~~~~~   72 (132)
T cd02964           2 FLLDGE-G-VVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEE-------GKNFEIVFVSRDRSEESFNEYFS   72 (132)
T ss_pred             ccccCC-c-cccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhc-------CCCeEEEEEecCCCHHHHHHHHh
Confidence            334555 5 89999999999999999999999999999999999999764       34799999999999999999999


Q ss_pred             cC-CccccccCC-cchhHHHHhcCcCccceEEEECCCCcEEeccccchhhc-ccccCCCC
Q 014225          289 TM-PWLALPFGD-PTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINL-YQENAYPF  345 (428)
Q Consensus       289 ~~-~~~~~~~~~-d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~-~g~~~~p~  345 (428)
                      ++ +|..+++.. +....+.+.|+|.++|+++|||++|+|+.+++...+.. +|+.+||+
T Consensus        73 ~~~~~~~~~~~d~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~  132 (132)
T cd02964          73 EMPPWLAVPFEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW  132 (132)
T ss_pred             cCCCeEeeccCcHHHHHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence            98 577777654 24567888999999999999999999999999988866 89988886

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=99.84  E-value=1.7e-20  Score=162.14  Aligned_cols=119  Identities=29%  Similarity=0.470  Sum_probs=106.9

Q ss_pred             hccCCCCccc-C--CCCCceecccccCCcEEEEEEecc-CChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC
Q 014225          202 LTNHDRGYLL-G--HPPDEKVPVSSLVGKTVGLYFSAR-WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD  277 (428)
Q Consensus       202 ~g~~~p~f~l-~--~~g~~~v~l~~~~gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d  277 (428)
                      .|.++|+|.+ +  .+|+ .+++++++||+++|+||++ |||+|..++|.|.+++++|+++         ++.+++|+++
T Consensus         2 ~G~~~P~~~~~~~~~~g~-~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~---------~v~~v~v~~~   71 (146)
T PF08534_consen    2 VGDKAPDFSLKDLDLDGK-PVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK---------GVDVVGVSSD   71 (146)
T ss_dssp             TTSB--CCEEEEEETTSE-EEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT---------TCEEEEEEES
T ss_pred             CCCCCCCeEEEeecCCCC-EecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC---------ceEEEEeccc
Confidence            4889999998 6  9999 9999999999999999999 9999999999999999999876         8999999999


Q ss_pred             CCHHHHHHHHhcCCccccccCCcchhHHHHhcCcC---------ccceEEEECCCCcEEecccc
Q 014225          278 RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ---------GIPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~---------~~P~~~lid~~G~i~~~~~~  332 (428)
                      .+.. ..+++.+.+ .++|+..|....+.+.|++.         ++|+++|||++|+|++.+.+
T Consensus        72 ~~~~-~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g  133 (146)
T PF08534_consen   72 DDPP-VREFLKKYG-INFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVG  133 (146)
T ss_dssp             SSHH-HHHHHHHTT-TTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEES
T ss_pred             CCHH-HHHHHHhhC-CCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeC
Confidence            7766 888888855 78888888899999999988         99999999999999998654

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.83  E-value=8.5e-20  Score=162.07  Aligned_cols=151  Identities=12%  Similarity=0.150  Sum_probs=125.2

Q ss_pred             ccCCCCccc-CCCCCceeccccc-CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC--
Q 014225          203 TNHDRGYLL-GHPPDEKVPVSSL-VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR--  278 (428)
Q Consensus       203 g~~~p~f~l-~~~g~~~v~l~~~-~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~--  278 (428)
                      |..+|+|.+ +.+|+ .++++++ +|+++||+||++|||.|..+++.|.+++++|+++         ++.+++|++|.  
T Consensus         1 g~~~p~f~l~~~~g~-~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~---------~v~~v~is~d~~~   70 (171)
T cd02969           1 GSPAPDFSLPDTDGK-TYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK---------GVAVVAINSNDIE   70 (171)
T ss_pred             CCcCCCccccCCCCC-EEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC---------CeEEEEEecCccc
Confidence            567899999 99999 9999998 8899999999999999999999999999999865         79999999985  


Q ss_pred             -----CHHHHHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHH
Q 014225          279 -----DQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFL  353 (428)
Q Consensus       279 -----~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L  353 (428)
                           +.+++++++.+.+ +.+|++.|....+.+.|++..+|+++|||++|+|++....+.  ..+.   ........+|
T Consensus        71 ~~~~d~~~~~~~~~~~~~-~~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G~v~~~~~~~~--~~~~---~~~~~~~~~~  144 (171)
T cd02969          71 AYPEDSPENMKAKAKEHG-YPFPYLLDETQEVAKAYGAACTPDFFLFDPDGKLVYRGRIDD--SRPG---NDPPVTGRDL  144 (171)
T ss_pred             cccccCHHHHHHHHHHCC-CCceEEECCchHHHHHcCCCcCCcEEEECCCCeEEEeecccC--Cccc---ccccccHHHH
Confidence                 5788999999877 568888898899999999999999999999999998754321  1110   0123445778


Q ss_pred             HHHHHHHHhcCCCCcc
Q 014225          354 EKQMEEEAKNLPRSEF  369 (428)
Q Consensus       354 ~~~l~~~~~~~~~~~~  369 (428)
                      .++|++++.+......
T Consensus       145 ~~~i~~~l~~~~~~~~  160 (171)
T cd02969         145 RAALDALLAGKPVPVP  160 (171)
T ss_pred             HHHHHHHHcCCCCCcc
Confidence            8999988887655433

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.82  E-value=8.7e-20  Score=163.94  Aligned_cols=117  Identities=19%  Similarity=0.157  Sum_probs=99.5

Q ss_pred             hhccCCCCccc-CCCC--Cceeccccc-CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEc
Q 014225          201 LLTNHDRGYLL-GHPP--DEKVPVSSL-VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST  276 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g--~~~v~l~~~-~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~  276 (428)
                      ..|.++|+|++ +.+|  + .++++++ +||+++|+||++||++|++++|.|.++.+    +         +++|++|+.
T Consensus        40 ~~g~~~p~f~l~~~~g~g~-~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~---------~~~vi~v~~  105 (185)
T PRK15412         40 LIGKPVPKFRLESLENPGQ-FYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----Q---------GIRVVGMNY  105 (185)
T ss_pred             hcCCCCCCcCCccCCCCCc-cccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----c---------CCEEEEEEC
Confidence            46889999999 8874  5 6666665 79999999999999999999999987743    3         589999999


Q ss_pred             CCCHHHHHHHHhcCCccccc-cCCcchhHHHHhcCcCccceEEEECCCCcEEecccc
Q 014225          277 DRDQTSFESYFGTMPWLALP-FGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       277 d~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~  332 (428)
                      +.+.++..+|+.+++ +.+| +..|....+.+.|++.++|++||||++|+|++++.+
T Consensus       106 ~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G~i~~~~~G  161 (185)
T PRK15412        106 KDDRQKAISWLKELG-NPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAG  161 (185)
T ss_pred             CCCHHHHHHHHHHcC-CCCceEEEcCCccHHHhcCCCcCCeEEEECCCceEEEEEec
Confidence            888888999998876 4565 356777889999999999999999999999998654

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=99.82  E-value=8.4e-20  Score=168.15  Aligned_cols=138  Identities=14%  Similarity=0.175  Sum_probs=108.1

Q ss_pred             hhhccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC-
Q 014225          200 NLLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD-  277 (428)
Q Consensus       200 ~~~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d-  277 (428)
                      ...|..+|+|++ +.+|+ .+++++++||+|||+||++||++|..++|.|++++++|+++         +++||+|++| 
T Consensus        73 ~~~g~~aPdF~l~d~~G~-~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~---------Gv~VIgV~~d~  142 (236)
T PLN02399         73 AATEKSVHDFTVKDIDGK-DVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ---------GFEILAFPCNQ  142 (236)
T ss_pred             hhcCCCCCceEEECCCCC-EEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC---------CcEEEEEeccc
Confidence            346889999999 99999 99999999999999999999999999999999999999876         8999999985 


Q ss_pred             ------CCHHHHHHHHh-cCCccccccCC--cchh-HHHHhcC-------------cCccceEEEECCCCcEEeccccch
Q 014225          278 ------RDQTSFESYFG-TMPWLALPFGD--PTIK-ELTKYFD-------------VQGIPCLVIIGPEGKTVTKQGRNL  334 (428)
Q Consensus       278 ------~~~~~~~~~~~-~~~~~~~~~~~--d~~~-~~~~~~~-------------v~~~P~~~lid~~G~i~~~~~~~~  334 (428)
                            .+.++.++|+. +++ +.||+..  |.++ .+...|+             +...|++||||++|+|+.++.+. 
T Consensus       143 ~~~~e~~s~~ei~~f~~~~~g-~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~-  220 (236)
T PLN02399        143 FGGQEPGSNPEIKQFACTRFK-AEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPT-  220 (236)
T ss_pred             ccccCCCCHHHHHHHHHHhcC-CCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCC-
Confidence                  35567888874 444 6788763  3222 2322222             35579999999999999986542 


Q ss_pred             hhcccccCCCCChHHHHHHHHHHHHHHh
Q 014225          335 INLYQENAYPFTEAKLEFLEKQMEEEAK  362 (428)
Q Consensus       335 ~~~~g~~~~p~~~~~~~~L~~~l~~~~~  362 (428)
                                .++   ++|++.|+++|+
T Consensus       221 ----------~~~---~~le~~I~~lL~  235 (236)
T PLN02399        221 ----------TSP---FQIEKDIQKLLA  235 (236)
T ss_pred             ----------CCH---HHHHHHHHHHhc
Confidence                      222   456666776664

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=99.82  E-value=6.1e-20  Score=153.81  Aligned_cols=116  Identities=28%  Similarity=0.548  Sum_probs=107.4

Q ss_pred             hccCCCCccc-CCCCCceecccccCCcEEEEEEecc-CChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSAR-WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD  279 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~  279 (428)
                      +|+++|+|++ +.+|+ .+++++++||+++|.||++ |||+|...++.|++++++|+++         ++.+++|+.| +
T Consensus         1 vG~~~P~f~l~~~~g~-~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~---------~~~vi~is~d-~   69 (124)
T PF00578_consen    1 VGDKAPDFTLTDSDGK-TVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDK---------GVQVIGISTD-D   69 (124)
T ss_dssp             TTSBGGCEEEETTTSE-EEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT---------TEEEEEEESS-S
T ss_pred             CcCCCCCcEeECCCCC-EEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccc---------eEEeeecccc-c
Confidence            5899999999 99999 9999999999999999998 9999999999999999999976         8999999997 5


Q ss_pred             HHHHHHHHhcCCccccccCCcchhHHHHhcCcC------ccceEEEECCCCcEEec
Q 014225          280 QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTK  329 (428)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~  329 (428)
                      .++.+++.+..+ +++|+..|....+.+.|++.      .+|++||||++|+|+++
T Consensus        70 ~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~  124 (124)
T PF00578_consen   70 PEEIKQFLEEYG-LPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA  124 (124)
T ss_dssp             HHHHHHHHHHHT-CSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred             ccchhhhhhhhc-cccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence            568888888776 88899999999999999998      99999999999999874

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=99.82  E-value=6.6e-20  Score=154.75  Aligned_cols=123  Identities=46%  Similarity=0.809  Sum_probs=113.9

Q ss_pred             cccCCCCEEecc-cCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhc--CCCce
Q 014225           46 LLNQHGTQVKVS-DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRAC--MPWLA  122 (428)
Q Consensus        46 l~~~~G~~v~l~-~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~--~~~~~  122 (428)
                      |...+|..+..+ .+.||+|.++|.|.||+||+.+.|.|+++|+++++++..++||+||.|++.+++.+|+..  +.|++
T Consensus        17 l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~   96 (157)
T KOG2501|consen   17 LRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLA   96 (157)
T ss_pred             eeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEE
Confidence            778889888887 689999999999999999999999999999999999889999999999999999999995  67999


Q ss_pred             eccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccccchhhhhhccc
Q 014225          123 VPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGI  172 (428)
Q Consensus       123 ~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~~~~~~i~~~g~  172 (428)
                      +||.+... +++.+.|.+.++|+++++.+   +|+++..+++..+..++.
T Consensus        97 iPf~d~~~-~~l~~ky~v~~iP~l~i~~~---dG~~v~~d~r~~v~~~g~  142 (157)
T KOG2501|consen   97 IPFGDDLI-QKLSEKYEVKGIPALVILKP---DGTVVTEDARLLVQLGGS  142 (157)
T ss_pred             ecCCCHHH-HHHHHhcccCcCceeEEecC---CCCEehHhhHHHHHhhcc
Confidence            99976554 99999999999999999999   999999999998877764

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=99.81  E-value=1.6e-19  Score=149.14  Aligned_cols=110  Identities=22%  Similarity=0.376  Sum_probs=96.3

Q ss_pred             CCccc-CCCCCceecccccC-CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHH
Q 014225          207 RGYLL-GHPPDEKVPVSSLV-GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFE  284 (428)
Q Consensus       207 p~f~l-~~~g~~~v~l~~~~-gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~  284 (428)
                      |+|.+ +.+|+ .+++++++ ||+++|+||++||++|+.++|.|+++++.+.+          ++.++.++ +.+.++++
T Consensus         1 p~f~l~~~~G~-~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~----------~~~vi~v~-~~~~~~~~   68 (114)
T cd02967           1 PTFDLTTIDGA-PVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD----------WLDVVLAS-DGEKAEHQ   68 (114)
T ss_pred             CCceeecCCCC-EEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC----------CcEEEEEe-CCCHHHHH
Confidence            68999 99999 99999997 99999999999999999999999999887753          47888776 66788999


Q ss_pred             HHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEecc
Q 014225          285 SYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       285 ~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      +++++++...+|+..+  ..+.+.|++..+|++||||++|+|++++
T Consensus        69 ~~~~~~~~~~~p~~~~--~~~~~~~~~~~~P~~~vid~~G~v~~~~  112 (114)
T cd02967          69 RFLKKHGLEAFPYVLS--AELGMAYQVSKLPYAVLLDEAGVIAAKG  112 (114)
T ss_pred             HHHHHhCCCCCcEEec--HHHHhhcCCCCcCeEEEECCCCeEEecc
Confidence            9999888656776653  5688999999999999999999999874

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>PTZ00056 glutathione peroxidase; Provisional

Probab=99.81  E-value=1.6e-19  Score=163.56  Aligned_cols=138  Identities=18%  Similarity=0.176  Sum_probs=106.9

Q ss_pred             hhccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC--
Q 014225          201 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD--  277 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d--  277 (428)
                      ..+..+|+|++ +.+|+ .+++++++||+|||+|||+|||+|.+++|.|++++++|+++         +++||+|+++  
T Consensus        14 ~~~~~~pdf~l~d~~G~-~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~---------g~~vvgv~~~~~   83 (199)
T PTZ00056         14 ELRKSIYDYTVKTLEGT-TVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL---------GLEILAFPTSQF   83 (199)
T ss_pred             hcCCCCCceEEECCCCC-EEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC---------ceEEEEecchhc
Confidence            34778999999 99999 99999999999999999999999999999999999999876         8999999974  


Q ss_pred             -----CCHHHHHHHHhcCCccccccCCcc------hhH--------HHHhcCcC----cc---ceEEEECCCCcEEeccc
Q 014225          278 -----RDQTSFESYFGTMPWLALPFGDPT------IKE--------LTKYFDVQ----GI---PCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       278 -----~~~~~~~~~~~~~~~~~~~~~~d~------~~~--------~~~~~~v~----~~---P~~~lid~~G~i~~~~~  331 (428)
                           .+.+++++|+++.+ ++||+..|.      ...        +...|++.    .+   |++||||++|+|+.++.
T Consensus        84 ~~~e~d~~e~~~~f~~~~~-~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~  162 (199)
T PTZ00056         84 LNQEFPNTKDIRKFNDKNK-IKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFS  162 (199)
T ss_pred             cCCCCCCHHHHHHHHHHcC-CCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeC
Confidence                 35678999998776 677775431      111        22334432    22   37999999999998865


Q ss_pred             cchhhcccccCCCCChHHHHHHHHHHHHHHhc
Q 014225          332 RNLINLYQENAYPFTEAKLEFLEKQMEEEAKN  363 (428)
Q Consensus       332 ~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~  363 (428)
                      +..           ..   ++|++.|+++++.
T Consensus       163 g~~-----------~~---~~l~~~I~~ll~~  180 (199)
T PTZ00056        163 PRT-----------EP---LELEKKIAELLGV  180 (199)
T ss_pred             CCC-----------CH---HHHHHHHHHHHHH
Confidence            421           22   4566667776653

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=99.81  E-value=1.7e-19  Score=152.27  Aligned_cols=124  Identities=47%  Similarity=0.861  Sum_probs=113.4

Q ss_pred             ccc-CCCCCceeccc-ccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHH
Q 014225          209 YLL-GHPPDEKVPVS-SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESY  286 (428)
Q Consensus       209 f~l-~~~g~~~v~l~-~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~  286 (428)
                      ..+ ..+|. .+..+ .+.||+|+++|.|.|||+|+.+.|.|.++|++.+++       +..++||+||.|.+.+++..|
T Consensus        15 ~~l~~~~~~-~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~-------~~~fEVvfVS~D~~~~~~~~y   86 (157)
T KOG2501|consen   15 NRLRKQDGT-EVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDN-------AAPFEVVFVSSDRDEESLDEY   86 (157)
T ss_pred             CeeeccCCc-cchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhc-------CCceEEEEEecCCCHHHHHHH
Confidence            344 77777 66666 689999999999999999999999999999999887       568999999999999999999


Q ss_pred             Hhc--CCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccc
Q 014225          287 FGT--MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQE  340 (428)
Q Consensus       287 ~~~--~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~  340 (428)
                      +..  .+|+.+|+.++..+++.+.|+|.++|++++++++|+++..+++.++..+|+
T Consensus        87 ~~~~~~~W~~iPf~d~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g~  142 (157)
T KOG2501|consen   87 MLEHHGDWLAIPFGDDLIQKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGGS  142 (157)
T ss_pred             HHhcCCCeEEecCCCHHHHHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhcc
Confidence            995  569999999999999999999999999999999999999999999988874

>PLN02412 probable glutathione peroxidase

Probab=99.81  E-value=1.5e-19  Score=159.51  Aligned_cols=134  Identities=15%  Similarity=0.207  Sum_probs=104.4

Q ss_pred             cCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC----
Q 014225          204 NHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR----  278 (428)
Q Consensus       204 ~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~----  278 (428)
                      ..+|+|++ +.+|+ .+++++++||++||+||++|||+|..++|.|++++++|+++         ++.|++|++|.    
T Consensus         7 ~~~pdf~l~d~~G~-~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~---------g~~vvgv~~~~~~~~   76 (167)
T PLN02412          7 KSIYDFTVKDIGGN-DVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ---------GFEILAFPCNQFLGQ   76 (167)
T ss_pred             CCCCceEEECCCCC-EEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC---------CcEEEEecccccccC
Confidence            56899999 99999 99999999999999999999999999999999999999977         89999999862    


Q ss_pred             ---CHHHHHHHH-hcCCccccccCCc--ch-hHHHHhcC-------------cCccceEEEECCCCcEEeccccchhhcc
Q 014225          279 ---DQTSFESYF-GTMPWLALPFGDP--TI-KELTKYFD-------------VQGIPCLVIIGPEGKTVTKQGRNLINLY  338 (428)
Q Consensus       279 ---~~~~~~~~~-~~~~~~~~~~~~d--~~-~~~~~~~~-------------v~~~P~~~lid~~G~i~~~~~~~~~~~~  338 (428)
                         +.++..+++ .+++ ++||+..+  .+ ...+..|+             +...|++||||++|+|+.+..+.     
T Consensus        77 ~~~~~~~~~~~~~~~~~-~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~-----  150 (167)
T PLN02412         77 EPGSNEEIQQTVCTRFK-AEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPT-----  150 (167)
T ss_pred             CCCCHHHHHHHHHHccC-CCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCC-----
Confidence               445666665 4444 78888652  22 23333332             66789999999999999986542     


Q ss_pred             cccCCCCChHHHHHHHHHHHHHHh
Q 014225          339 QENAYPFTEAKLEFLEKQMEEEAK  362 (428)
Q Consensus       339 g~~~~p~~~~~~~~L~~~l~~~~~  362 (428)
                            .++   ++|.+.|+++++
T Consensus       151 ------~~~---~~l~~~i~~~l~  165 (167)
T PLN02412        151 ------TSP---LKIEKDIQNLLG  165 (167)
T ss_pred             ------CCH---HHHHHHHHHHHh
Confidence                  222   456666766654

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.81  E-value=4e-19  Score=157.93  Aligned_cols=121  Identities=25%  Similarity=0.471  Sum_probs=111.1

Q ss_pred             hhccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC
Q 014225          201 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD  279 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~  279 (428)
                      ..|..+|+|++ +.+|+ .+++++++||+++|+||++||++|+...+.|.++++++++.         ++.+++|++|.+
T Consensus        36 ~~g~~~p~~~~~~~~g~-~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~---------~~~vi~i~~d~~  105 (173)
T PRK03147         36 QVGKEAPNFVLTDLEGK-KIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK---------GVEIIAVNVDET  105 (173)
T ss_pred             CCCCCCCCcEeecCCCC-EEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC---------CeEEEEEEcCCC
Confidence            36889999999 99999 99999999999999999999999999999999999999865         799999999999


Q ss_pred             HHHHHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEecccc
Q 014225          280 QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~  332 (428)
                      .+.++.+.++++ +++|+..|....+.+.|++..+|++++||++|+++....+
T Consensus       106 ~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g  157 (173)
T PRK03147        106 ELAVKNFVNRYG-LTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITG  157 (173)
T ss_pred             HHHHHHHHHHhC-CCceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEEEeC
Confidence            899999998877 6788888888999999999999999999999999977543

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.81  E-value=2.2e-19  Score=151.35  Aligned_cols=115  Identities=17%  Similarity=0.245  Sum_probs=99.9

Q ss_pred             CCCCccc-CCCC--CceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHH
Q 014225          205 HDRGYLL-GHPP--DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQT  281 (428)
Q Consensus       205 ~~p~f~l-~~~g--~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~  281 (428)
                      ++|+|++ +.+|  . .+++++++||+++|+||++|||+|++++|.|+++.+++            +++|++|+.+.+.+
T Consensus         2 ~~p~f~~~~~~g~~~-~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~------------~~~vv~v~~~~~~~   68 (127)
T cd03010           2 PAPAFSLPALPGPDK-TLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG------------RVPIYGINYKDNPE   68 (127)
T ss_pred             CCCCcccccccCCCc-cccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc------------CcEEEEEECCCCHH
Confidence            5799999 8888  7 89999999999999999999999999999999887653            38999999988899


Q ss_pred             HHHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEecccc
Q 014225          282 SFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~  332 (428)
                      ++++|+.+......++..|....+++.|++.++|++++||++|+++.+..+
T Consensus        69 ~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P~~~~ld~~G~v~~~~~G  119 (127)
T cd03010          69 NALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVPETFLIDGDGIIRYKHVG  119 (127)
T ss_pred             HHHHHHHhcCCCCceEEECCcchHHHhcCCCCCCeEEEECCCceEEEEEec
Confidence            999999887743234556777899999999999999999999999988544

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=99.80  E-value=3e-19  Score=147.43  Aligned_cols=111  Identities=19%  Similarity=0.330  Sum_probs=94.7

Q ss_pred             cCc-cccCCCCEEecccCC-CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCC
Q 014225           43 RDY-LLNQHGTQVKVSDLE-GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPW  120 (428)
Q Consensus        43 pdf-l~~~~G~~v~l~~~~-gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~  120 (428)
                      |+| +.+.+|+.+++++++ ||+++|+||++||++|+.++|.|+++++++++.   +.++.++ |.+.+..+++++++++
T Consensus         1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~---~~vi~v~-~~~~~~~~~~~~~~~~   76 (114)
T cd02967           1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADW---LDVVLAS-DGEKAEHQRFLKKHGL   76 (114)
T ss_pred             CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCC---cEEEEEe-CCCHHHHHHHHHHhCC
Confidence            688 999999999999997 999999999999999999999999999987543   7888775 7777889999998876


Q ss_pred             ceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccccc
Q 014225          121 LAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG  163 (428)
Q Consensus       121 ~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~~~  163 (428)
                      ..+|... +  ..+.+.|++..+|++++||+   +|+++++.+
T Consensus        77 ~~~p~~~-~--~~~~~~~~~~~~P~~~vid~---~G~v~~~~~  113 (114)
T cd02967          77 EAFPYVL-S--AELGMAYQVSKLPYAVLLDE---AGVIAAKGL  113 (114)
T ss_pred             CCCcEEe-c--HHHHhhcCCCCcCeEEEECC---CCeEEeccc
Confidence            4444322 2  56889999999999999999   999988754

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=99.80  E-value=2e-19  Score=155.41  Aligned_cols=118  Identities=27%  Similarity=0.449  Sum_probs=100.4

Q ss_pred             ccccccCc-ccc--CCCCEEecccCCCCEEEEEEecC-CChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHH
Q 014225           38 LASKDRDY-LLN--QHGTQVKVSDLEGKVTALYFSAN-WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNN  113 (428)
Q Consensus        38 ~g~~~pdf-l~~--~~G~~v~l~~~~gk~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~  113 (428)
                      +|+.+|+| +.+  .+|+++++++++||+++|+||++ |||+|+.++|.|.++++++++.+  +.+++|+.+.+.. ..+
T Consensus         2 ~G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~--v~~v~v~~~~~~~-~~~   78 (146)
T PF08534_consen    2 VGDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKG--VDVVGVSSDDDPP-VRE   78 (146)
T ss_dssp             TTSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--CEEEEEEESSSHH-HHH
T ss_pred             CCCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCc--eEEEEecccCCHH-HHH
Confidence            58999999 855  99999999999999999999999 99999999999999999999987  9999999988877 888


Q ss_pred             HHhcCCCceeccCChHHHHHHHhhcCCC---------CCceEEEEcCCCCCCCcccccc
Q 014225          114 YRACMPWLAVPYSDLETKKALNRKFDIE---------GIPCLVVLQPYDDKDDATLHDG  163 (428)
Q Consensus       114 ~~~~~~~~~~~~~d~~~~~~l~~~~~v~---------~~P~~~lid~~~~dG~i~~~~~  163 (428)
                      ++++.+....-..|.+  ..+.+.|++.         ++|++++||+   +|+|++...
T Consensus        79 ~~~~~~~~~~~~~D~~--~~~~~~~~~~~~~~~~~~~~~P~~~lId~---~G~V~~~~~  132 (146)
T PF08534_consen   79 FLKKYGINFPVLSDPD--GALAKALGVTIMEDPGNGFGIPTTFLIDK---DGKVVYRHV  132 (146)
T ss_dssp             HHHHTTTTSEEEEETT--SHHHHHTTCEEECCTTTTSSSSEEEEEET---TSBEEEEEE
T ss_pred             HHHhhCCCceEEechH--HHHHHHhCCccccccccCCeecEEEEEEC---CCEEEEEEe
Confidence            8887653222222433  7999999988         9999999999   999987743

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.80  E-value=4.3e-19  Score=141.60  Aligned_cols=93  Identities=45%  Similarity=0.924  Sum_probs=84.3

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcC--CccccccCCcchh
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTM--PWLALPFGDPTIK  303 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~--~~~~~~~~~d~~~  303 (428)
                      ||+++|+||++||++|++++|.|.+++++|++.        .++++|+|++|.+.++++++++..  +|..+++..+...
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~--------~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKK--------DDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNS   72 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT--------TTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHH
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC--------CCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHH
Confidence            799999999999999999999999999999822        379999999999999999999988  7999999988889


Q ss_pred             HHHHhcCcCccceEEEECCCCcE
Q 014225          304 ELTKYFDVQGIPCLVIIGPEGKT  326 (428)
Q Consensus       304 ~~~~~~~v~~~P~~~lid~~G~i  326 (428)
                      .+.+.|++.++|+++|+|++|+|
T Consensus        73 ~l~~~~~i~~iP~~~lld~~G~I   95 (95)
T PF13905_consen   73 ELLKKYGINGIPTLVLLDPDGKI   95 (95)
T ss_dssp             HHHHHTT-TSSSEEEEEETTSBE
T ss_pred             HHHHHCCCCcCCEEEEECCCCCC
Confidence            99999999999999999999987

...

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.80  E-value=7.7e-19  Score=177.98  Aligned_cols=119  Identities=17%  Similarity=0.271  Sum_probs=105.4

Q ss_pred             hccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC---
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD---  277 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d---  277 (428)
                      .+.++|+|.+ |.+|+ .+.++  +||+|||+|||+||++|+.++|.|++++++++..         ++.||+|+++   
T Consensus        34 ~~~~lP~f~l~D~dG~-~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~---------~v~VI~Vs~~~~~  101 (521)
T PRK14018         34 VPHTLSTLKTADNRPA-SVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS---------SANLITVASPGFL  101 (521)
T ss_pred             ccCCCCCeEeecCCCc-eeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC---------CeEEEEEeccccc
Confidence            3568999999 99999 88887  8999999999999999999999999999998754         7899999873   


Q ss_pred             --CCHHHHHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEecccc
Q 014225          278 --RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       278 --~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~  332 (428)
                        .+.+++++++..+++.++|+..|....+++.|+|.++|+++|||++|+|+.+..+
T Consensus       102 ~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~~G  158 (521)
T PRK14018        102 HEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRIVKG  158 (521)
T ss_pred             ccccHHHHHHHHHhCCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEEEeC
Confidence              3456788888888777889999999999999999999999999999999988544

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=99.80  E-value=4e-19  Score=156.91  Aligned_cols=118  Identities=13%  Similarity=0.117  Sum_probs=103.8

Q ss_pred             hccCCCCccc-CCCCCceecccccCCcEEEEEEeccC-ChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARW-CIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD  279 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~w-C~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~  279 (428)
                      +|.++|+|++ +.+|+ .+++++++||+++|+||++| ||+|..++|.|+++++++.           +++|++||.| +
T Consensus        20 ~G~~~P~f~l~~~~g~-~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-----------~~~vv~vs~D-~   86 (167)
T PRK00522         20 VGDKAPDFTLVANDLS-DVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-----------NTVVLCISAD-L   86 (167)
T ss_pred             CCCCCCCeEEEcCCCc-EEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-----------CcEEEEEeCC-C
Confidence            5899999999 99999 99999999999999999999 9999999999999988873           5899999998 4


Q ss_pred             HHHHHHHHhcCCccccccCCc-chhHHHHhcCcCccc---------eEEEECCCCcEEecccc
Q 014225          280 QTSFESYFGTMPWLALPFGDP-TIKELTKYFDVQGIP---------CLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~v~~~P---------~~~lid~~G~i~~~~~~  332 (428)
                      ....++|.++.+...++++.| ....+++.||+...|         ++||||++|+|++.+.+
T Consensus        87 ~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~  149 (167)
T PRK00522         87 PFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSELV  149 (167)
T ss_pred             HHHHHHHHHhCCCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEEC
Confidence            566788888877444788888 456999999998777         99999999999998743

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=99.79  E-value=2.7e-19  Score=150.60  Aligned_cols=106  Identities=25%  Similarity=0.318  Sum_probs=96.3

Q ss_pred             CCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC-----CCHHHHHHHHhc
Q 014225          215 PDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD-----RDQTSFESYFGT  289 (428)
Q Consensus       215 g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d-----~~~~~~~~~~~~  289 (428)
                      |+ .+++++++||++||+||++||++|.+++|.|++++++|+++         ++.+++|+.+     .+.+++++++++
T Consensus        13 ~~-~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~---------~~~vi~i~~~~~~~~~~~~~~~~~~~~   82 (126)
T cd03012          13 DK-PLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD---------GLVVIGVHSPEFAFERDLANVKSAVLR   82 (126)
T ss_pred             CC-ccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcC---------CeEEEEeccCccccccCHHHHHHHHHH
Confidence            45 89999999999999999999999999999999999999866         7999999863     467889999988


Q ss_pred             CCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEeccc
Q 014225          290 MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       290 ~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~  331 (428)
                      .+ +++|+..|....+.+.|++.++|+++|||++|+|+++..
T Consensus        83 ~~-~~~p~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~~  123 (126)
T cd03012          83 YG-ITYPVANDNDYATWRAYGNQYWPALYLIDPTGNVRHVHF  123 (126)
T ss_pred             cC-CCCCEEECCchHHHHHhCCCcCCeEEEECCCCcEEEEEe
Confidence            77 679999999999999999999999999999999999854

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.79  E-value=1.1e-18  Score=139.27  Aligned_cols=93  Identities=39%  Similarity=0.755  Sum_probs=82.2

Q ss_pred             CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcC--CCceeccCChHHHHHHHhhc
Q 014225           61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACM--PWLAVPYSDLETKKALNRKF  138 (428)
Q Consensus        61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~--~~~~~~~~d~~~~~~l~~~~  138 (428)
                      ||+++|+||++||++|++++|.|+++++++++ +.++++|+|+.|.+.+.++++++++  +|..+++.+.. ...+.+.|
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~   78 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDN-NSELLKKY   78 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHH-HHHHHHHT
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcch-HHHHHHHC
Confidence            79999999999999999999999999999995 3459999999999999999999988  89999985544 48999999


Q ss_pred             CCCCCceEEEEcCCCCCCCc
Q 014225          139 DIEGIPCLVVLQPYDDKDDA  158 (428)
Q Consensus       139 ~v~~~P~~~lid~~~~dG~i  158 (428)
                      ++.++|+++|+|+   +|+|
T Consensus        79 ~i~~iP~~~lld~---~G~I   95 (95)
T PF13905_consen   79 GINGIPTLVLLDP---DGKI   95 (95)
T ss_dssp             T-TSSSEEEEEET---TSBE
T ss_pred             CCCcCCEEEEECC---CCCC
Confidence            9999999999999   9975

...

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=1.2e-18  Score=148.61  Aligned_cols=118  Identities=19%  Similarity=0.257  Sum_probs=108.8

Q ss_pred             hhccCCCCccc-CCCCCceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC
Q 014225          201 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR  278 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~  278 (428)
                      .+|.++|||++ +.+|+ .++|++++||+|||+|| ..++|.|..++..+++.+.+|...         +.+|++||.| 
T Consensus         5 ~~G~~aPdF~Lp~~~g~-~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~---------~a~V~GIS~D-   73 (157)
T COG1225           5 KVGDKAPDFELPDQDGE-TVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL---------GAVVLGISPD-   73 (157)
T ss_pred             CCCCcCCCeEeecCCCC-EEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhC---------CCEEEEEeCC-
Confidence            36999999999 99999 99999999999999999 479999999999999999999977         8999999999 


Q ss_pred             CHHHHHHHHhcCCccccccCCcchhHHHHhcCcC------------ccceEEEECCCCcEEecc
Q 014225          279 DQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ------------GIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~------------~~P~~~lid~~G~i~~~~  330 (428)
                      +....++|..+.+ ++|+.+.|...++++.|||-            ..+++||||++|+|++..
T Consensus        74 s~~~~~~F~~k~~-L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~  136 (157)
T COG1225          74 SPKSHKKFAEKHG-LTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW  136 (157)
T ss_pred             CHHHHHHHHHHhC-CCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe
Confidence            7788999999888 77999999999999999982            357899999999999976

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.79  E-value=1e-18  Score=155.37  Aligned_cols=118  Identities=17%  Similarity=0.239  Sum_probs=98.5

Q ss_pred             hhccCCCCccc-CCCCC-ceeccccc-CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC
Q 014225          201 LLTNHDRGYLL-GHPPD-EKVPVSSL-VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD  277 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g~-~~v~l~~~-~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d  277 (428)
                      .+|.++|+|++ +.+|+ ..++++++ +||+++|+||++||++|++++|.++++++    +         ++++++|+.+
T Consensus        35 ~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~----~---------~~~vi~V~~~  101 (173)
T TIGR00385        35 LIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK----D---------GLPIVGVDYK  101 (173)
T ss_pred             hcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH----c---------CCEEEEEECC
Confidence            56899999999 88886 13444565 68999999999999999999999887653    2         5899999998


Q ss_pred             CCHHHHHHHHhcCCccccc-cCCcchhHHHHhcCcCccceEEEECCCCcEEecccc
Q 014225          278 RDQTSFESYFGTMPWLALP-FGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~  332 (428)
                      .+.++..+|+++++ +.|+ +..|....+.+.|++.++|++++||++|+|++++.+
T Consensus       102 ~~~~~~~~~~~~~~-~~f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~G  156 (173)
T TIGR00385       102 DQSQNALKFLKELG-NPYQAILIDPNGKLGLDLGVYGAPETFLVDGNGVILYRHAG  156 (173)
T ss_pred             CChHHHHHHHHHcC-CCCceEEECCCCchHHhcCCeeCCeEEEEcCCceEEEEEec
Confidence            77788888988876 4565 456777899999999999999999999999998654

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=99.79  E-value=3.2e-19  Score=155.25  Aligned_cols=115  Identities=15%  Similarity=0.215  Sum_probs=95.7

Q ss_pred             CCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC------
Q 014225          206 DRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR------  278 (428)
Q Consensus       206 ~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~------  278 (428)
                      .|+|++ +.+|+ .+++++++||+|+|+||++||| |..++|.|++++++|+++         ++.|++|++|.      
T Consensus         2 ~~~f~l~d~~G~-~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~---------~~~vv~v~~~~~~~~~~   70 (152)
T cd00340           2 IYDFSVKDIDGE-PVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR---------GLVVLGFPCNQFGGQEP   70 (152)
T ss_pred             cceeEEECCCCC-EEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC---------CEEEEEeccCccccCCC
Confidence            589999 99999 9999999999999999999999 999999999999999866         79999999752      


Q ss_pred             -CHHHHHHHHhc-CCccccccCCcc--hhH-HHHhcC--cCccc-----------eEEEECCCCcEEecccc
Q 014225          279 -DQTSFESYFGT-MPWLALPFGDPT--IKE-LTKYFD--VQGIP-----------CLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       279 -~~~~~~~~~~~-~~~~~~~~~~d~--~~~-~~~~~~--v~~~P-----------~~~lid~~G~i~~~~~~  332 (428)
                       +.++.++|+++ .+ ++||+..|.  ... ....|+  +.++|           ++||||++|+|+.+..+
T Consensus        71 ~~~~~~~~f~~~~~~-~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G  141 (152)
T cd00340          71 GSNEEIKEFCETNYG-VTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAP  141 (152)
T ss_pred             CCHHHHHHHHHHhcC-CCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECC
Confidence             45788999986 45 678887642  222 345555  45666           79999999999998655

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=99.79  E-value=1.2e-18  Score=154.92  Aligned_cols=119  Identities=22%  Similarity=0.289  Sum_probs=101.9

Q ss_pred             hccCCCCccc-CCCC----CceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEE
Q 014225          202 LTNHDRGYLL-GHPP----DEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS  275 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g----~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is  275 (428)
                      +|.++|+|.+ +.+|    + .+++++++||++||+|| ++||++|..+++.|++++++|.+.         ++.|++||
T Consensus         1 vG~~aP~f~~~~~~g~~~~~-~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~---------~v~vv~Is   70 (173)
T cd03015           1 VGKKAPDFKATAVVPNGEFK-EISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL---------NAEVLGVS   70 (173)
T ss_pred             CCCcCCCCEeecccCCCCce-EEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC---------CCEEEEEe
Confidence            4889999999 7777    6 89999999999999999 799999999999999999999876         89999999


Q ss_pred             cCCCHHHHHHHHhcC------CccccccCCcchhHHHHhcCcC------ccceEEEECCCCcEEeccc
Q 014225          276 TDRDQTSFESYFGTM------PWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       276 ~d~~~~~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~  331 (428)
                      +|.. ...+++.+..      .-++|++..|....+++.||+.      .+|++||||++|+|++++.
T Consensus        71 ~d~~-~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~  137 (173)
T cd03015          71 TDSH-FSHLAWRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITV  137 (173)
T ss_pred             cCCH-HHHHHHHHhhhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEe
Confidence            9853 3334444432      2367899999999999999986      6789999999999999863

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=99.78  E-value=1.2e-18  Score=152.06  Aligned_cols=118  Identities=17%  Similarity=0.223  Sum_probs=105.8

Q ss_pred             hccCCCCccc-CCCCCceecccccCCcEEEEEEecc-CChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSAR-WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD  279 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~  279 (428)
                      +|.++|+|++ +.+|+ .+++++++||++||+||++ ||+.|..+++.|.+++++++++         ++++|+|+.| +
T Consensus         6 ~g~~~p~f~l~~~~G~-~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~---------~v~vi~Is~d-~   74 (154)
T PRK09437          6 AGDIAPKFSLPDQDGE-QVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA---------GVVVLGISTD-K   74 (154)
T ss_pred             CCCcCCCcEeeCCCCC-EEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC---------CCEEEEEcCC-C
Confidence            5889999999 99999 9999999999999999986 7889999999999999999876         7999999998 5


Q ss_pred             HHHHHHHHhcCCccccccCCcchhHHHHhcCcCcc------------ceEEEECCCCcEEeccc
Q 014225          280 QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGI------------PCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~------------P~~~lid~~G~i~~~~~  331 (428)
                      .+++++|.++++ ++||++.|....+.+.||+...            |++||||++|+|+..+.
T Consensus        75 ~~~~~~~~~~~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~  137 (154)
T PRK09437         75 PEKLSRFAEKEL-LNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFD  137 (154)
T ss_pred             HHHHHHHHHHhC-CCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEc
Confidence            688889998876 6788888888899999998654            77899999999999864

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=99.78  E-value=8.6e-19  Score=150.85  Aligned_cols=118  Identities=13%  Similarity=0.114  Sum_probs=104.1

Q ss_pred             hccCCCCccc-CCCCCceecccccCCcEEEEEEeccC-ChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARW-CIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD  279 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~w-C~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~  279 (428)
                      +|.++|+|++ +.+|+ .+++++++||++||+||++| |++|+.++|.|.+++++++           ++.|++|++|. 
T Consensus         2 ~G~~aP~f~l~~~~g~-~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-----------~~~vi~Is~d~-   68 (143)
T cd03014           2 VGDKAPDFTLVTSDLS-EVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-----------NTVVLTISADL-   68 (143)
T ss_pred             CCCCCCCcEEECCCCc-EEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-----------CCEEEEEECCC-
Confidence            4889999999 99999 99999999999999999988 6999999999999998873           58999999985 


Q ss_pred             HHHHHHHHhcCCccccccCCcch-hHHHHhcCcCc------cceEEEECCCCcEEecccc
Q 014225          280 QTSFESYFGTMPWLALPFGDPTI-KELTKYFDVQG------IPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~v~~------~P~~~lid~~G~i~~~~~~  332 (428)
                      ....+++..+.+...+++..|.. ..+++.||+..      .|++||||++|+|+..+.+
T Consensus        69 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~~  128 (143)
T cd03014          69 PFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVELV  128 (143)
T ss_pred             HHHHHHHHHhcCCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEEC
Confidence            56778888887766788888875 89999999863      7999999999999998643

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=99.78  E-value=3.4e-18  Score=154.06  Aligned_cols=114  Identities=21%  Similarity=0.280  Sum_probs=95.5

Q ss_pred             hhccCCCCccc-CCCCCceeccc--ccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC
Q 014225          201 LLTNHDRGYLL-GHPPDEKVPVS--SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD  277 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g~~~v~l~--~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d  277 (428)
                      .+|..+|+|++ +.+|+ .++++  +++||+++|+||++|||+|++++|.+.++++++            ++.+++|+.|
T Consensus        47 ~vG~~aP~f~l~d~~G~-~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~------------~~~vv~Is~~  113 (189)
T TIGR02661        47 DVGDAAPIFNLPDFDGE-PVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE------------ETDVVMISDG  113 (189)
T ss_pred             CCCCcCCCcEecCCCCC-EEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc------------CCcEEEEeCC
Confidence            46899999999 99999 99995  579999999999999999999999999887543            4678888854


Q ss_pred             CCHHHHHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEecc
Q 014225          278 RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                       +.++.++|+++++. .++... ...++.+.|++..+|++|+||++|+|++++
T Consensus       114 -~~~~~~~~~~~~~~-~~~~~~-~~~~i~~~y~v~~~P~~~lID~~G~I~~~g  163 (189)
T TIGR02661       114 -TPAEHRRFLKDHEL-GGERYV-VSAEIGMAFQVGKIPYGVLLDQDGKIRAKG  163 (189)
T ss_pred             -CHHHHHHHHHhcCC-Ccceee-chhHHHHhccCCccceEEEECCCCeEEEcc
Confidence             67888999988763 333221 357889999999999999999999999863

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=99.77  E-value=1.8e-18  Score=148.20  Aligned_cols=116  Identities=26%  Similarity=0.332  Sum_probs=105.5

Q ss_pred             CCCCccc-CCCCCceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHH
Q 014225          205 HDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTS  282 (428)
Q Consensus       205 ~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~  282 (428)
                      ++|+|.+ +.+|+ .+++++++||+++|+|| ++|||+|..+++.|.++++++++.         +++||+|++| +.+.
T Consensus         2 ~~p~f~l~~~~g~-~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~---------~~~vv~is~d-~~~~   70 (140)
T cd03017           2 KAPDFTLPDQDGE-TVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL---------GAVVIGVSPD-SVES   70 (140)
T ss_pred             CCCCccccCCCCC-EEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC---------CCEEEEEcCC-CHHH
Confidence            5799999 99999 99999999999999999 589999999999999999999876         7999999998 5678


Q ss_pred             HHHHHhcCCccccccCCcchhHHHHhcCcCcc---------ceEEEECCCCcEEecccc
Q 014225          283 FESYFGTMPWLALPFGDPTIKELTKYFDVQGI---------PCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       283 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~---------P~~~lid~~G~i~~~~~~  332 (428)
                      +.+|.++.+ +.+|++.|....+.+.||+...         |+++|||++|+|++.+.+
T Consensus        71 ~~~~~~~~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g  128 (140)
T cd03017          71 HAKFAEKYG-LPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRK  128 (140)
T ss_pred             HHHHHHHhC-CCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEec
Confidence            889998877 5788988988999999999988         999999999999998644

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=99.77  E-value=1e-18  Score=146.31  Aligned_cols=115  Identities=25%  Similarity=0.501  Sum_probs=99.9

Q ss_pred             ccccccCc-cccCCCCEEecccCCCCEEEEEEecC-CChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHH
Q 014225           38 LASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSAN-WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYR  115 (428)
Q Consensus        38 ~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~  115 (428)
                      +|+++|+| +.+.+|+.+++++++||+++|.||++ ||++|+..++.|+++++++++.+  +.+++|+.|... ..+++.
T Consensus         1 vG~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~--~~vi~is~d~~~-~~~~~~   77 (124)
T PF00578_consen    1 VGDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKG--VQVIGISTDDPE-EIKQFL   77 (124)
T ss_dssp             TTSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--EEEEEEESSSHH-HHHHHH
T ss_pred             CcCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccce--EEeeeccccccc-chhhhh
Confidence            58999999 99999999999999999999999999 99999999999999999999887  999999996655 678888


Q ss_pred             hcCCCceeccCChHHHHHHHhhcCCC------CCceEEEEcCCCCCCCccc
Q 014225          116 ACMPWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATL  160 (428)
Q Consensus       116 ~~~~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~dG~i~~  160 (428)
                      +.+++....+.|.+  ..+.+.|++.      .+|+++|||+   +|+|++
T Consensus        78 ~~~~~~~~~~~D~~--~~~~~~~~~~~~~~~~~~p~~~lid~---~g~I~~  123 (124)
T PF00578_consen   78 EEYGLPFPVLSDPD--GELAKAFGIEDEKDTLALPAVFLIDP---DGKIRY  123 (124)
T ss_dssp             HHHTCSSEEEEETT--SHHHHHTTCEETTTSEESEEEEEEET---TSBEEE
T ss_pred             hhhccccccccCcc--hHHHHHcCCccccCCceEeEEEEECC---CCEEEe
Confidence            86653222233433  7999999998      9999999999   999875

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>PTZ00256 glutathione peroxidase; Provisional

Probab=99.77  E-value=3.5e-18  Score=153.22  Aligned_cols=120  Identities=18%  Similarity=0.215  Sum_probs=94.4

Q ss_pred             ccCCCCccc-CCCCCceecccccCCcEE-EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC--
Q 014225          203 TNHDRGYLL-GHPPDEKVPVSSLVGKTV-GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR--  278 (428)
Q Consensus       203 g~~~p~f~l-~~~g~~~v~l~~~~gk~v-ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~--  278 (428)
                      +...|+|++ +.+|+ .+++++++||++ ++.|||+|||+|..++|.|++++++|+++         ++.|++|++|.  
T Consensus        17 ~~~~p~f~l~d~~G~-~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~---------gv~vv~vs~~~~~   86 (183)
T PTZ00256         17 TKSFFEFEAIDIDGQ-LVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ---------GLEILAFPCNQFM   86 (183)
T ss_pred             CCcccceEeEcCCCC-EEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC---------CcEEEEEeccccc
Confidence            567899999 99999 999999999964 56679999999999999999999999876         79999999752  


Q ss_pred             -----CHHHHHHHHhcCCccccccCCc--chh----HHH------------HhcCcCccce---EEEECCCCcEEecccc
Q 014225          279 -----DQTSFESYFGTMPWLALPFGDP--TIK----ELT------------KYFDVQGIPC---LVIIGPEGKTVTKQGR  332 (428)
Q Consensus       279 -----~~~~~~~~~~~~~~~~~~~~~d--~~~----~~~------------~~~~v~~~P~---~~lid~~G~i~~~~~~  332 (428)
                           +.++..+|+.+...++||+..|  .+.    .+.            ..+++.++|+   +||||++|+|+.++.+
T Consensus        87 ~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g  166 (183)
T PTZ00256         87 EQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSP  166 (183)
T ss_pred             ccCCCCHHHHHHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECC
Confidence                 3467888876332367887644  222    222            1236778994   6999999999998654

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=99.76  E-value=5.2e-18  Score=146.92  Aligned_cols=119  Identities=19%  Similarity=0.229  Sum_probs=105.1

Q ss_pred             hccCCCCccc-CCCCCceecccccCC-cEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSLVG-KTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR  278 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~~g-k~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~  278 (428)
                      +|..+|+|.+ +.+|+ .+++++++| |+++|.|| ++||++|...+|.|++++++++++         ++.+++|+.| 
T Consensus         3 ~G~~~p~~~l~~~~g~-~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~---------~v~vi~vs~d-   71 (149)
T cd03018           3 VGDKAPDFELPDQNGQ-EVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAA---------GAEVLGISVD-   71 (149)
T ss_pred             CCCcCCCcEecCCCCC-EEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC---------CCEEEEecCC-
Confidence            5889999999 99999 999999999 99999888 899999999999999999999866         7999999988 


Q ss_pred             CHHHHHHHHhcCCccccccCCcch--hHHHHhcCcCc----c--ceEEEECCCCcEEecccc
Q 014225          279 DQTSFESYFGTMPWLALPFGDPTI--KELTKYFDVQG----I--PCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~----~--P~~~lid~~G~i~~~~~~  332 (428)
                      +.+..++|.++++ +.||+..|..  ..+.+.|++..    +  |+++|||++|+|++.+.+
T Consensus        72 ~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~  132 (149)
T cd03018          72 SPFSLRAWAEENG-LTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVS  132 (149)
T ss_pred             CHHHHHHHHHhcC-CCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEec
Confidence            5667888888876 6888888876  88999999973    3  489999999999998654

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.76  E-value=1.9e-17  Score=152.37  Aligned_cols=178  Identities=14%  Similarity=0.131  Sum_probs=113.8

Q ss_pred             CCCCEEEEEEec---CCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHH
Q 014225           59 LEGKVTALYFSA---NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN  135 (428)
Q Consensus        59 ~~gk~vlv~F~a---~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~  135 (428)
                      +++...++.|++   +||++|+...|.++++.+++..    +++..+++|.+..                      ..++
T Consensus        17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~----~~i~~v~vd~~~~----------------------~~l~   70 (215)
T TIGR02187        17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK----LKLEIYDFDTPED----------------------KEEA   70 (215)
T ss_pred             cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC----ceEEEEecCCccc----------------------HHHH
Confidence            444555666777   9999999999999999999832    5666666665433                      7899


Q ss_pred             hhcCCCCCceEEEEcCCCCCCCcccccchhhhhhcccCccccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCcccCCCC
Q 014225          136 RKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPP  215 (428)
Q Consensus       136 ~~~~v~~~P~~~lid~~~~dG~i~~~~~~~~i~~~g~~~~p~t~~~~~~l~~~~~~~~~~~~~~~~~g~~~p~f~l~~~g  215 (428)
                      +.|+|.++||+++++    +|+.+.....+         .+........+......       .   +   +.-.++...
T Consensus        71 ~~~~V~~~Pt~~~f~----~g~~~~~~~~G---------~~~~~~l~~~i~~~~~~-------~---~---~~~~L~~~~  124 (215)
T TIGR02187        71 EKYGVERVPTTIILE----EGKDGGIRYTG---------IPAGYEFAALIEDIVRV-------S---Q---GEPGLSEKT  124 (215)
T ss_pred             HHcCCCccCEEEEEe----CCeeeEEEEee---------cCCHHHHHHHHHHHHHh-------c---C---CCCCCCHHH
Confidence            999999999999998    57554211111         11111111112111100       0   0   001111110


Q ss_pred             CceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCcccc
Q 014225          216 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLAL  295 (428)
Q Consensus       216 ~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~  295 (428)
                        .-.+.++.+.++++.||++||++|+.+.+.++++..+.           +++.+..|..+..                
T Consensus       125 --~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-----------~~i~~~~vD~~~~----------------  175 (215)
T TIGR02187       125 --VELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN-----------DKILGEMIEANEN----------------  175 (215)
T ss_pred             --HHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-----------CceEEEEEeCCCC----------------
Confidence              11223345556777799999999999988888776653           2466766666644                


Q ss_pred             ccCCcchhHHHHhcCcCccceEEEECCCCc
Q 014225          296 PFGDPTIKELTKYFDVQGIPCLVIIGPEGK  325 (428)
Q Consensus       296 ~~~~d~~~~~~~~~~v~~~P~~~lid~~G~  325 (428)
                             .++++.|+|.++||+++. .+|+
T Consensus       176 -------~~~~~~~~V~~vPtl~i~-~~~~  197 (215)
T TIGR02187       176 -------PDLAEKYGVMSVPKIVIN-KGVE  197 (215)
T ss_pred             -------HHHHHHhCCccCCEEEEe-cCCE
Confidence                   678899999999999876 6675

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>TIGR03137 AhpC peroxiredoxin

Probab=99.76  E-value=3.8e-18  Score=153.47  Aligned_cols=121  Identities=22%  Similarity=0.301  Sum_probs=100.8

Q ss_pred             hhccCCCCccc-C-CCCC-ceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEc
Q 014225          201 LLTNHDRGYLL-G-HPPD-EKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST  276 (428)
Q Consensus       201 ~~g~~~p~f~l-~-~~g~-~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~  276 (428)
                      .+|.++|+|++ + .+|+ ..+++++++||++||+|| ++||++|..+++.|++++++|++.         +++|++||+
T Consensus         3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~---------gv~vi~VS~   73 (187)
T TIGR03137         3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKL---------GVEVYSVST   73 (187)
T ss_pred             ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc---------CCcEEEEeC
Confidence            46999999999 7 4665 157888999999999999 999999999999999999999876         899999999


Q ss_pred             CCCHHHHHHHHhc---CCccccccCCcchhHHHHhcCcC------ccceEEEECCCCcEEeccc
Q 014225          277 DRDQTSFESYFGT---MPWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       277 d~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~  331 (428)
                      |. ....++|...   ...+.||++.|....+++.||+.      ..|++||||++|+|++...
T Consensus        74 D~-~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~  136 (187)
T TIGR03137        74 DT-HFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEI  136 (187)
T ss_pred             CC-HHHHHHHHhhhhhccCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEE
Confidence            95 3444444432   22467889999899999999986      4699999999999999853

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.76  E-value=2.9e-18  Score=144.47  Aligned_cols=111  Identities=15%  Similarity=0.194  Sum_probs=95.2

Q ss_pred             cccCc-cccCCC--CEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhc
Q 014225           41 KDRDY-LLNQHG--TQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRAC  117 (428)
Q Consensus        41 ~~pdf-l~~~~G--~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~  117 (428)
                      .+|+| +.+.+|  .++++++++||+++|+||++||++|+.++|.|+++.+++   +  +++++|+.+.+.+.+++++++
T Consensus         2 ~~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~--~~vv~v~~~~~~~~~~~~~~~   76 (127)
T cd03010           2 PAPAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG---R--VPIYGINYKDNPENALAWLAR   76 (127)
T ss_pred             CCCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---C--cEEEEEECCCCHHHHHHHHHh
Confidence            57999 999988  889999999999999999999999999999999988774   3  899999999888999999988


Q ss_pred             CCCceecc-CChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          118 MPWLAVPY-SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       118 ~~~~~~~~-~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      ++..+.+. .|..  ..+++.|++.++|++++||+   +|+++..
T Consensus        77 ~~~~~~~~~~D~~--~~~~~~~~v~~~P~~~~ld~---~G~v~~~  116 (127)
T cd03010          77 HGNPYAAVGFDPD--GRVGIDLGVYGVPETFLIDG---DGIIRYK  116 (127)
T ss_pred             cCCCCceEEECCc--chHHHhcCCCCCCeEEEECC---CceEEEE
Confidence            76532221 2433  78999999999999999999   9988755

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=99.75  E-value=6.3e-18  Score=151.18  Aligned_cols=121  Identities=16%  Similarity=0.262  Sum_probs=102.4

Q ss_pred             hhccCCCCccc-C---CCCCceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEE
Q 014225          201 LLTNHDRGYLL-G---HPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS  275 (428)
Q Consensus       201 ~~g~~~p~f~l-~---~~g~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is  275 (428)
                      .+|.++|+|+. .   .+.. .+++++++||++||+|| +.|||+|..+++.|.+++++|.+.         +++|++||
T Consensus         3 ~~~~~~p~f~~~~~~~g~~~-~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~---------g~~vigIS   72 (187)
T PRK10382          3 LINTKIKPFKNQAFKNGEFI-EVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL---------GVDVYSVS   72 (187)
T ss_pred             ccCCcCCCcEEEEEeCCcce-EEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC---------CCEEEEEe
Confidence            47999999997 3   3334 77888999999999999 999999999999999999999877         89999999


Q ss_pred             cCCCHHHHHHHHhcC---CccccccCCcchhHHHHhcCc----Ccc--ceEEEECCCCcEEecccc
Q 014225          276 TDRDQTSFESYFGTM---PWLALPFGDPTIKELTKYFDV----QGI--PCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       276 ~d~~~~~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~v----~~~--P~~~lid~~G~i~~~~~~  332 (428)
                      +| +....++|....   ..+.||++.|.+..+++.||+    .++  |++||||++|+|++....
T Consensus        73 ~D-~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~  137 (187)
T PRK10382         73 TD-THFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVT  137 (187)
T ss_pred             CC-CHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEe
Confidence            98 455666666542   347889999999999999998    356  999999999999998643

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=99.75  E-value=1.6e-18  Score=150.84  Aligned_cols=115  Identities=13%  Similarity=0.173  Sum_probs=89.2

Q ss_pred             ccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCC-------ChHHHHH
Q 014225           42 DRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-------DLNAFNN  113 (428)
Q Consensus        42 ~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~-------~~~~~~~  113 (428)
                      +|+| |.+.+|+++++++++||+|+|+|||+||+ |+.++|.|++++++|++.|  +.+++|+.|.       +.+.+++
T Consensus         2 ~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~   78 (152)
T cd00340           2 IYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRG--LVVLGFPCNQFGGQEPGSNEEIKE   78 (152)
T ss_pred             cceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCC--EEEEEeccCccccCCCCCHHHHHH
Confidence            6899 99999999999999999999999999999 9999999999999998877  9999998753       3567899


Q ss_pred             HHhc-CCCceeccCChHHHHH-HHhhcC--CCCCc-----------eEEEEcCCCCCCCccccc
Q 014225          114 YRAC-MPWLAVPYSDLETKKA-LNRKFD--IEGIP-----------CLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       114 ~~~~-~~~~~~~~~d~~~~~~-l~~~~~--v~~~P-----------~~~lid~~~~dG~i~~~~  162 (428)
                      |+++ +++.+..+.+.+.... ....|+  +..+|           +++|||+   +|+++.+.
T Consensus        79 f~~~~~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~---~G~i~~~~  139 (152)
T cd00340          79 FCETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDR---DGEVVKRF  139 (152)
T ss_pred             HHHHhcCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECC---CCcEEEEE
Confidence            9976 5532111222111111 344444  34555           7999999   99998763

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=99.75  E-value=5.2e-18  Score=147.75  Aligned_cols=116  Identities=16%  Similarity=0.165  Sum_probs=92.6

Q ss_pred             CCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC-------C
Q 014225          207 RGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD-------R  278 (428)
Q Consensus       207 p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d-------~  278 (428)
                      -+|++ +.+|+ .+++++++||++||+||++|||+|..++|.|++++++|+++         ++.|++|+++       .
T Consensus         3 ~~f~l~~~~G~-~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~---------~~~v~~i~~~~~~~~~~d   72 (153)
T TIGR02540         3 YSFEVKDARGR-TVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPS---------HFNVLAFPCNQFGESEPD   72 (153)
T ss_pred             ccceeECCCCC-EecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC---------CeEEEEEeccccccCCCC
Confidence            36888 99999 99999999999999999999999999999999999999876         8999999962       3


Q ss_pred             CHHHHHHHHhcCCccccccCCc-----chhHHHHhcCc---Cccce----EEEECCCCcEEecccc
Q 014225          279 DQTSFESYFGTMPWLALPFGDP-----TIKELTKYFDV---QGIPC----LVIIGPEGKTVTKQGR  332 (428)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~d-----~~~~~~~~~~v---~~~P~----~~lid~~G~i~~~~~~  332 (428)
                      +.+..++|+++...++||+..|     ........|.+   .++|+    +||||++|+|+.+..+
T Consensus        73 ~~~~~~~f~~~~~~~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g  138 (153)
T TIGR02540        73 SSKEIESFARRNYGVTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRP  138 (153)
T ss_pred             CHHHHHHHHHHhcCCCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECC
Confidence            5678889987532367888654     11222222322   35898    9999999999998654

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>PTZ00056 glutathione peroxidase; Provisional

Probab=99.75  E-value=1.6e-17  Score=150.63  Aligned_cols=120  Identities=13%  Similarity=0.112  Sum_probs=92.6

Q ss_pred             ccccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecC-------CChH
Q 014225           38 LASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-------EDLN  109 (428)
Q Consensus        38 ~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D-------~~~~  109 (428)
                      .+..+|+| +.+.+|+.+++++++||+|+|+|||+||++|+.++|.|++++++|+++|  ++||+|+.|       .+.+
T Consensus        15 ~~~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g--~~vvgv~~~~~~~~e~d~~e   92 (199)
T PTZ00056         15 LRKSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLG--LEILAFPTSQFLNQEFPNTK   92 (199)
T ss_pred             cCCCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCc--eEEEEecchhccCCCCCCHH
Confidence            46789999 9999999999999999999999999999999999999999999999988  999999975       3567


Q ss_pred             HHHHHHhcCCCceeccCCh--H--HHH--------HHHhhcCCC----CC---ceEEEEcCCCCCCCccccc
Q 014225          110 AFNNYRACMPWLAVPYSDL--E--TKK--------ALNRKFDIE----GI---PCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       110 ~~~~~~~~~~~~~~~~~d~--~--~~~--------~l~~~~~v~----~~---P~~~lid~~~~dG~i~~~~  162 (428)
                      .+++|+++++..+..+.+.  +  ...        .+...|+..    .+   |+++|||+   +|+++.+.
T Consensus        93 ~~~~f~~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~---~G~iv~~~  161 (199)
T PTZ00056         93 DIRKFNDKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNK---SGNVVAYF  161 (199)
T ss_pred             HHHHHHHHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECC---CCcEEEEe
Confidence            8999998876422211110  0  001        122334432    23   37999999   99998654

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.74  E-value=5.6e-18  Score=152.20  Aligned_cols=116  Identities=17%  Similarity=0.207  Sum_probs=95.0

Q ss_pred             ccccccccCc-cccCC--CCEEecccC-CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHH
Q 014225           36 SLLASKDRDY-LLNQH--GTQVKVSDL-EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAF  111 (428)
Q Consensus        36 ~~~g~~~pdf-l~~~~--G~~v~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~  111 (428)
                      ...|..+|+| +.+.+  |+.++++++ +||+++|+||++||++|+.++|.|+++++    .+  +++++|+.|++.+..
T Consensus        39 ~~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~~--~~vi~v~~~~~~~~~  112 (185)
T PRK15412         39 ALIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----QG--IRVVGMNYKDDRQKA  112 (185)
T ss_pred             hhcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----cC--CEEEEEECCCCHHHH
Confidence            3568999999 98888  467777765 79999999999999999999999988754    34  899999998888889


Q ss_pred             HHHHhcCCCceec-cCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCccccc
Q 014225          112 NNYRACMPWLAVP-YSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       112 ~~~~~~~~~~~~~-~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~~  162 (428)
                      ++|+++++..... ..|..  ..+.+.|++.++|++++||+   +|++++..
T Consensus       113 ~~~~~~~~~~~~~~~~D~~--~~~~~~~gv~~~P~t~vid~---~G~i~~~~  159 (185)
T PRK15412        113 ISWLKELGNPYALSLFDGD--GMLGLDLGVYGAPETFLIDG---NGIIRYRH  159 (185)
T ss_pred             HHHHHHcCCCCceEEEcCC--ccHHHhcCCCcCCeEEEECC---CceEEEEE
Confidence            9999987642211 22433  67888999999999999999   99988663

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=99.74  E-value=6.9e-18  Score=142.06  Aligned_cols=105  Identities=20%  Similarity=0.223  Sum_probs=89.7

Q ss_pred             CCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecC-----CChHHHHHHHhcCCCceecc
Q 014225           51 GTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-----EDLNAFNNYRACMPWLAVPY  125 (428)
Q Consensus        51 G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D-----~~~~~~~~~~~~~~~~~~~~  125 (428)
                      |+++++++++||+++|+||++||++|+.++|.|+++++++++.+  +++++|+.+     .+.+.++++++++++.+..+
T Consensus        13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~--~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~   90 (126)
T cd03012          13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDG--LVVIGVHSPEFAFERDLANVKSAVLRYGITYPVA   90 (126)
T ss_pred             CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCC--eEEEEeccCccccccCHHHHHHHHHHcCCCCCEE
Confidence            46899999999999999999999999999999999999999876  999999763     45778899999877532223


Q ss_pred             CChHHHHHHHhhcCCCCCceEEEEcCCCCCCCccccc
Q 014225          126 SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       126 ~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~~  162 (428)
                      .|.+  ..+.+.|++.++|++++||+   +|++++..
T Consensus        91 ~D~~--~~~~~~~~v~~~P~~~vid~---~G~v~~~~  122 (126)
T cd03012          91 NDND--YATWRAYGNQYWPALYLIDP---TGNVRHVH  122 (126)
T ss_pred             ECCc--hHHHHHhCCCcCCeEEEECC---CCcEEEEE
Confidence            3443  78999999999999999999   99998764

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>PRK13599 putative peroxiredoxin; Provisional

Probab=99.74  E-value=1.3e-17  Score=152.62  Aligned_cols=140  Identities=10%  Similarity=0.078  Sum_probs=113.0

Q ss_pred             hhccCCCCccc-CCCCCceecccccCCcEE-EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC
Q 014225          201 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTV-GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR  278 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g~~~v~l~~~~gk~v-ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~  278 (428)
                      .+|.++|+|++ +.+|. .+.+++++||++ |++||++|||+|..+++.|.+++++|+++         +++|++||+|.
T Consensus         3 ~~Gd~aPdF~l~t~~G~-~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~---------gv~vigIS~D~   72 (215)
T PRK13599          3 LLGEKFPSMEVVTTQGV-KRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL---------NTELIGLSVDQ   72 (215)
T ss_pred             CCCCCCCCCEeECCCCc-EecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC---------CCEEEEEeCCC
Confidence            57999999999 89998 888899999975 67888999999999999999999999977         89999999996


Q ss_pred             C--HHHHHHHHhcC--CccccccCCcchhHHHHhcCcC-------ccceEEEECCCCcEEeccccchhhcccccCCCCCh
Q 014225          279 D--QTSFESYFGTM--PWLALPFGDPTIKELTKYFDVQ-------GIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTE  347 (428)
Q Consensus       279 ~--~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~v~-------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~  347 (428)
                      .  ...|.+++++.  .-++||+..|.+..+++.||+.       ..|++||||++|+|+.......          .+.
T Consensus        73 ~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~----------~~g  142 (215)
T PRK13599         73 VFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQ----------EVG  142 (215)
T ss_pred             HHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCC----------CCC
Confidence            3  44577776643  2378999999999999999983       6899999999999998742211          122


Q ss_pred             HHHHHHHHHHHHH
Q 014225          348 AKLEFLEKQMEEE  360 (428)
Q Consensus       348 ~~~~~L~~~l~~~  360 (428)
                      ..++++.+.|+++
T Consensus       143 r~~~eilr~l~~l  155 (215)
T PRK13599        143 RNVDEILRALKAL  155 (215)
T ss_pred             CCHHHHHHHHHHh
Confidence            3456666666554

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=99.73  E-value=8.8e-18  Score=154.76  Aligned_cols=121  Identities=13%  Similarity=0.153  Sum_probs=93.8

Q ss_pred             ccccccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecC-------CC
Q 014225           36 SLLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-------ED  107 (428)
Q Consensus        36 ~~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D-------~~  107 (428)
                      ...|..+||| |.+.+|+.+++++++||+|+|+||++||++|+.++|.|++++++|+++|  ++||+|+.|       .+
T Consensus        73 ~~~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~G--v~VIgV~~d~~~~~e~~s  150 (236)
T PLN02399         73 AATEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGS  150 (236)
T ss_pred             hhcCCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCC--cEEEEEecccccccCCCC
Confidence            3578999999 9999999999999999999999999999999999999999999999988  999999975       34


Q ss_pred             hHHHHHHH-hcCCCceeccC--ChHHHHHHHh-------hcC------CCCCceEEEEcCCCCCCCccccc
Q 014225          108 LNAFNNYR-ACMPWLAVPYS--DLETKKALNR-------KFD------IEGIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       108 ~~~~~~~~-~~~~~~~~~~~--d~~~~~~l~~-------~~~------v~~~P~~~lid~~~~dG~i~~~~  162 (428)
                      .+..++|+ ++++.....+.  |.+. ..+..       .++      +...|+++|||+   +|+++.+.
T Consensus       151 ~~ei~~f~~~~~g~~fPvl~~~D~~G-~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk---~GkVv~~~  217 (236)
T PLN02399        151 NPEIKQFACTRFKAEFPIFDKVDVNG-PSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDK---NGKVVERY  217 (236)
T ss_pred             HHHHHHHHHHhcCCCCccccccCCCc-chhhHHHHHHHHhcCCccCCccccCceEEEECC---CCcEEEEE
Confidence            56788887 45543211121  2111 12211       222      355799999999   99998764

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=99.73  E-value=2.2e-17  Score=135.18  Aligned_cols=112  Identities=29%  Similarity=0.512  Sum_probs=102.1

Q ss_pred             Cccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC-HHHHHH
Q 014225          208 GYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD-QTSFES  285 (428)
Q Consensus       208 ~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~-~~~~~~  285 (428)
                      +|.+ +.+|+ .+++++++||+++|+||++||++|+..++.|.++.+++...         ++.+++|++|.+ .+.+++
T Consensus         1 ~~~~~~~~g~-~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~---------~~~~~~v~~d~~~~~~~~~   70 (116)
T cd02966           1 DFSLPDLDGK-PVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDD---------GVEVVGVNVDDDDPAAVKA   70 (116)
T ss_pred             CccccCCCCC-EeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCC---------CeEEEEEECCCCCHHHHHH
Confidence            4667 88999 99999999999999999999999999999999999998744         799999999987 999999


Q ss_pred             HHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEecc
Q 014225          286 YFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       286 ~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      ++...+ ..+++..|....+.+.|++.++|+++|+|++|+++.+.
T Consensus        71 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~~~  114 (116)
T cd02966          71 FLKKYG-ITFPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRARH  114 (116)
T ss_pred             HHHHcC-CCcceEEcCcchHHHhcCcCccceEEEECCCCcEEEEe
Confidence            999887 78888888788999999999999999999999999874

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.73  E-value=2.3e-17  Score=146.58  Aligned_cols=118  Identities=18%  Similarity=0.351  Sum_probs=103.9

Q ss_pred             cccccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHH
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYR  115 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~  115 (428)
                      .+|..+|+| +.+.+|+.+++++++||+++|+||++||++|+..+|.|+++++++++.+  +.+++|+.|.+.+.+.+++
T Consensus        36 ~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~--~~vi~i~~d~~~~~~~~~~  113 (173)
T PRK03147         36 QVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKG--VEIIAVNVDETELAVKNFV  113 (173)
T ss_pred             CCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCC--eEEEEEEcCCCHHHHHHHH
Confidence            368899999 9999999999999999999999999999999999999999999999876  9999999999999999999


Q ss_pred             hcCCCceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          116 ACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       116 ~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      ++++.....+.+..  ..+.+.|++..+|++++||+   +|+++..
T Consensus       114 ~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~---~g~i~~~  154 (173)
T PRK03147        114 NRYGLTFPVAIDKG--RQVIDAYGVGPLPTTFLIDK---DGKVVKV  154 (173)
T ss_pred             HHhCCCceEEECCc--chHHHHcCCCCcCeEEEECC---CCcEEEE
Confidence            98764222222333  78999999999999999999   9988754

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=99.72  E-value=3.4e-17  Score=147.52  Aligned_cols=113  Identities=18%  Similarity=0.264  Sum_probs=94.9

Q ss_pred             cccccccCc-cccCCCCEEecc--cCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHH
Q 014225           37 LLASKDRDY-LLNQHGTQVKVS--DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNN  113 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~--~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~  113 (428)
                      .+|+.+|+| +.+.+|+.++++  .++||+++|+||++||++|+.++|.+++++++.   +  +.+++|+ +++.+..++
T Consensus        47 ~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---~--~~vv~Is-~~~~~~~~~  120 (189)
T TIGR02661        47 DVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---E--TDVVMIS-DGTPAEHRR  120 (189)
T ss_pred             CCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc---C--CcEEEEe-CCCHHHHHH
Confidence            468999999 999999999995  579999999999999999999999999988653   3  6688887 456678899


Q ss_pred             HHhcCCCceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          114 YRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       114 ~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      |+++++....++. .  ...+.+.|++..+|++++||+   +|++++.
T Consensus       121 ~~~~~~~~~~~~~-~--~~~i~~~y~v~~~P~~~lID~---~G~I~~~  162 (189)
T TIGR02661       121 FLKDHELGGERYV-V--SAEIGMAFQVGKIPYGVLLDQ---DGKIRAK  162 (189)
T ss_pred             HHHhcCCCcceee-c--hhHHHHhccCCccceEEEECC---CCeEEEc
Confidence            9998875433332 2  268889999999999999999   9998865

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.72  E-value=2.4e-17  Score=167.21  Aligned_cols=117  Identities=15%  Similarity=0.233  Sum_probs=98.6

Q ss_pred             cccccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecC-----CChHH
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-----EDLNA  110 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D-----~~~~~  110 (428)
                      ..++.+|+| +.+.+|+++.++  +||+|+|+|||+||++|+.++|.|++++++++..+  ++||+|+.+     .+.+.
T Consensus        33 ~~~~~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~--v~VI~Vs~~~~~~e~~~~~  108 (521)
T PRK14018         33 TVPHTLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSS--ANLITVASPGFLHEKKDGD  108 (521)
T ss_pred             cccCCCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCC--eEEEEEecccccccccHHH
Confidence            346789999 999999999998  89999999999999999999999999999998765  999999863     34566


Q ss_pred             HHHHHhcCCCceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          111 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       111 ~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      ++++++.+++..+|+ ..+....+++.|++.++|+++|||+   +|+++..
T Consensus       109 ~~~~~~~~~y~~~pV-~~D~~~~lak~fgV~giPTt~IIDk---dGkIV~~  155 (521)
T PRK14018        109 FQKWYAGLDYPKLPV-LTDNGGTLAQSLNISVYPSWAIIGK---DGDVQRI  155 (521)
T ss_pred             HHHHHHhCCCcccce-eccccHHHHHHcCCCCcCeEEEEcC---CCeEEEE
Confidence            788888777655553 2232378999999999999999999   9998865

>PTZ00102 disulphide isomerase; Provisional

Probab=99.72  E-value=1.6e-16  Score=163.74  Aligned_cols=94  Identities=20%  Similarity=0.305  Sum_probs=70.1

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .|++|+|+|||+||++|+.+.|.|+++++.+++.        ..+.++.++++.+                       ..
T Consensus       374 ~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~--------~~v~~~~id~~~~-----------------------~~  422 (477)
T PTZ00102        374 SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDN--------DSIIVAKMNGTAN-----------------------ET  422 (477)
T ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccC--------CcEEEEEEECCCC-----------------------cc
Confidence            4789999999999999999999999999988753        2467777776644                       44


Q ss_pred             HHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKN  363 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~  363 (428)
                      .++.|+++++||+++++++|++..+..       |       ....+.|.+.|++.+..
T Consensus       423 ~~~~~~v~~~Pt~~~~~~~~~~~~~~~-------G-------~~~~~~l~~~i~~~~~~  467 (477)
T PTZ00102        423 PLEEFSWSAFPTILFVKAGERTPIPYE-------G-------ERTVEGFKEFVNKHATN  467 (477)
T ss_pred             chhcCCCcccCeEEEEECCCcceeEec-------C-------cCCHHHHHHHHHHcCCC
Confidence            678899999999999988777533321       1       11235667777765543

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.72  E-value=3.9e-17  Score=144.97  Aligned_cols=117  Identities=16%  Similarity=0.269  Sum_probs=101.7

Q ss_pred             cccccCc-cccCCCCEEecccC-CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCC-------ChH
Q 014225           39 ASKDRDY-LLNQHGTQVKVSDL-EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-------DLN  109 (428)
Q Consensus        39 g~~~pdf-l~~~~G~~v~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~-------~~~  109 (428)
                      |..+|+| +.+.+|++++++++ +||++||+||++||+.|..+++.|.+++++|++.+  +.+++|+.|.       +.+
T Consensus         1 g~~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~--v~~v~is~d~~~~~~~d~~~   78 (171)
T cd02969           1 GSPAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKG--VAVVAINSNDIEAYPEDSPE   78 (171)
T ss_pred             CCcCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCC--eEEEEEecCccccccccCHH
Confidence            5678999 99999999999998 99999999999999999999999999999998766  9999999985       568


Q ss_pred             HHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCccccc
Q 014225          110 AFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       110 ~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~~  162 (428)
                      .++++++++++...-..|.+  ..+.+.|++..+|+++|||+   +|++++..
T Consensus        79 ~~~~~~~~~~~~~~~l~D~~--~~~~~~~~v~~~P~~~lid~---~G~v~~~~  126 (171)
T cd02969          79 NMKAKAKEHGYPFPYLLDET--QEVAKAYGAACTPDFFLFDP---DGKLVYRG  126 (171)
T ss_pred             HHHHHHHHCCCCceEEECCc--hHHHHHcCCCcCCcEEEECC---CCeEEEee
Confidence            89999988765422223443  68999999999999999999   99998663

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>PRK13190 putative peroxiredoxin; Provisional

Probab=99.72  E-value=3.4e-17  Score=148.93  Aligned_cols=139  Identities=16%  Similarity=0.123  Sum_probs=108.5

Q ss_pred             hccCCCCccc-CCCCCceecccccCCcEEEE-EEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGL-YFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD  279 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll-~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~  279 (428)
                      +|..+|+|++ +..|  .+++++++||+++| +||++|||+|..+++.|.+++++|+++         +++|++||+|..
T Consensus         4 vG~~aP~F~~~~~~g--~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~---------~~~vi~vS~D~~   72 (202)
T PRK13190          4 LGQKAPDFTVNTTKG--PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL---------GVELVGLSVDSI   72 (202)
T ss_pred             CCCCCCCcEEecCCC--cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC---------CCEEEEEeCCCH
Confidence            6899999999 6665  68999999997766 678999999999999999999999977         899999999953


Q ss_pred             H--HHHHH-HHhcCC-ccccccCCcchhHHHHhcCcC------ccceEEEECCCCcEEeccccchhhcccccCCCCChHH
Q 014225          280 Q--TSFES-YFGTMP-WLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAK  349 (428)
Q Consensus       280 ~--~~~~~-~~~~~~-~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~  349 (428)
                      .  .+|.+ +....+ .+.||++.|.+..+++.||+.      .+|++||||++|+|++....+.          .....
T Consensus        73 ~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~----------~~gr~  142 (202)
T PRK13190         73 YSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPA----------ETGRN  142 (202)
T ss_pred             HHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCC----------CCCCC
Confidence            2  23332 333344 368999999999999999984      5899999999999998753221          11234


Q ss_pred             HHHHHHHHHHHH
Q 014225          350 LEFLEKQMEEEA  361 (428)
Q Consensus       350 ~~~L~~~l~~~~  361 (428)
                      +++|.+.|+.+.
T Consensus       143 ~~ellr~l~~l~  154 (202)
T PRK13190        143 IDEIIRITKALQ  154 (202)
T ss_pred             HHHHHHHHHHhh
Confidence            577777776553

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=99.72  E-value=4.7e-17  Score=139.28  Aligned_cols=118  Identities=21%  Similarity=0.245  Sum_probs=104.9

Q ss_pred             CCCCccc-CCCCCceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHH
Q 014225          205 HDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTS  282 (428)
Q Consensus       205 ~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~  282 (428)
                      .+|+|++ +.+|+ .+++++++||+++|+|| ++||++|...++.|.+++++|+..         ++.+++|+.| +.+.
T Consensus         1 ~~p~f~l~~~~g~-~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~---------~~~~i~is~d-~~~~   69 (140)
T cd02971           1 KAPDFTLPATDGG-EVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG---------GAEVLGVSVD-SPFS   69 (140)
T ss_pred             CCCCceeccCCCc-EEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC---------CCEEEEEeCC-CHHH
Confidence            3689999 99999 99999999999999999 689999999999999999999755         7999999998 5677


Q ss_pred             HHHHHhcCCccccccCCcchhHHHHhcCcCccc---------eEEEECCCCcEEeccccc
Q 014225          283 FESYFGTMPWLALPFGDPTIKELTKYFDVQGIP---------CLVIIGPEGKTVTKQGRN  333 (428)
Q Consensus       283 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P---------~~~lid~~G~i~~~~~~~  333 (428)
                      .++|.++++...|+++.|....+.+.||+...|         +++|||++|+|++++.+.
T Consensus        70 ~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~  129 (140)
T cd02971          70 HKAWAEKEGGLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEP  129 (140)
T ss_pred             HHHHHhcccCCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEecC
Confidence            888988884578888889888999999988665         899999999999986543

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=99.71  E-value=5.5e-17  Score=151.42  Aligned_cols=121  Identities=15%  Similarity=0.135  Sum_probs=99.9

Q ss_pred             hhccCCCCccc-C-CCCC-ceeccccc-CCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEE
Q 014225          201 LLTNHDRGYLL-G-HPPD-EKVPVSSL-VGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS  275 (428)
Q Consensus       201 ~~g~~~p~f~l-~-~~g~-~~v~l~~~-~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is  275 (428)
                      ++|+++|+|++ + .+|. +.++++++ +||++||+|| +.|||+|..+++.|++++++|+++         +++|++||
T Consensus        69 ~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~---------gv~VigIS  139 (261)
T PTZ00137         69 LVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER---------GVKVLGVS  139 (261)
T ss_pred             cCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC---------CCEEEEEE
Confidence            57999999998 5 4553 16899997 8888888888 799999999999999999999977         89999999


Q ss_pred             cCCCHHHHHHHHh----c--CCccccccCCcchhHHHHhcCcC-----ccceEEEECCCCcEEeccc
Q 014225          276 TDRDQTSFESYFG----T--MPWLALPFGDPTIKELTKYFDVQ-----GIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       276 ~d~~~~~~~~~~~----~--~~~~~~~~~~d~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~  331 (428)
                      +|. ....+++..    +  ...+.||++.|.+..+++.||+.     ..|++||||++|+|++...
T Consensus       140 ~Ds-~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~  205 (261)
T PTZ00137        140 VDS-PFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAV  205 (261)
T ss_pred             CCC-HHHHHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEE
Confidence            996 333333332    2  13477999999999999999985     5899999999999999863

>PRK15000 peroxidase; Provisional

Probab=99.71  E-value=4.8e-17  Score=147.47  Aligned_cols=139  Identities=16%  Similarity=0.243  Sum_probs=106.2

Q ss_pred             hhccCCCCccc-CCC--CCcee---ccccc-CCcEEEEEEec-cCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEE
Q 014225          201 LLTNHDRGYLL-GHP--PDEKV---PVSSL-VGKTVGLYFSA-RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVV  272 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~--g~~~v---~l~~~-~gk~vll~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv  272 (428)
                      ++|.++|+|++ +..  |+ .+   +++++ +||+++|+||+ .||++|..+++.|.+++++|+++         +++|+
T Consensus         3 ~vg~~aPdF~~~~~~~~g~-~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~---------g~~vi   72 (200)
T PRK15000          3 LVTRQAPDFTAAAVLGSGE-IVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR---------GVEVV   72 (200)
T ss_pred             cCCCcCCCCEeecccCCCc-eeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC---------CCEEE
Confidence            47999999999 653  44 43   44554 79999999998 49999999999999999999977         89999


Q ss_pred             EEEcCCCH--HHHHHH-HhcCC--ccccccCCcchhHHHHhcCcC------ccceEEEECCCCcEEeccccchhhccccc
Q 014225          273 FVSTDRDQ--TSFESY-FGTMP--WLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQGRNLINLYQEN  341 (428)
Q Consensus       273 ~is~d~~~--~~~~~~-~~~~~--~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~g~~  341 (428)
                      +||+|...  ..|.+. ....+  -+.||++.|....+++.||+.      .+|++||||++|+|++...+++       
T Consensus        73 gvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~-------  145 (200)
T PRK15000         73 GVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDL-------  145 (200)
T ss_pred             EEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCC-------
Confidence            99999532  334332 22232  268999999999999999997      7999999999999999754322       


Q ss_pred             CCCCChHHHHHHHHHHHH
Q 014225          342 AYPFTEAKLEFLEKQMEE  359 (428)
Q Consensus       342 ~~p~~~~~~~~L~~~l~~  359 (428)
                        +.. +.++++.+.|+.
T Consensus       146 --~~g-r~~~eilr~l~a  160 (200)
T PRK15000        146 --PLG-RNIDEMLRMVDA  160 (200)
T ss_pred             --CCC-CCHHHHHHHHHH
Confidence              122 245666666654

>PLN02412 probable glutathione peroxidase

Probab=99.71  E-value=1.2e-17  Score=147.36  Aligned_cols=116  Identities=15%  Similarity=0.168  Sum_probs=88.7

Q ss_pred             ccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCC-------ChHHH
Q 014225           40 SKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-------DLNAF  111 (428)
Q Consensus        40 ~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~-------~~~~~  111 (428)
                      ..+||| |.+.+|+.+++++++||++||+||++||++|+.++|.|++++++|++.|  ++|++|+.|.       +.+.+
T Consensus         7 ~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g--~~vvgv~~~~~~~~~~~~~~~~   84 (167)
T PLN02412          7 KSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQG--FEILAFPCNQFLGQEPGSNEEI   84 (167)
T ss_pred             CCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCC--cEEEEecccccccCCCCCHHHH
Confidence            668999 9999999999999999999999999999999999999999999999988  9999999763       33445


Q ss_pred             HHH-HhcCCCceecc-C--ChHHHHHHHhhc-----------C--CCCCceEEEEcCCCCCCCccccc
Q 014225          112 NNY-RACMPWLAVPY-S--DLETKKALNRKF-----------D--IEGIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       112 ~~~-~~~~~~~~~~~-~--d~~~~~~l~~~~-----------~--v~~~P~~~lid~~~~dG~i~~~~  162 (428)
                      .++ .++++.. +|. .  +.+. ......|           +  +...|+++|||+   +|+++...
T Consensus        85 ~~~~~~~~~~~-fpvl~~~d~~g-~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~---~G~vv~~~  147 (167)
T PLN02412         85 QQTVCTRFKAE-FPIFDKVDVNG-KNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSK---EGKVVQRY  147 (167)
T ss_pred             HHHHHHccCCC-CceEeEEeeCC-CCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECC---CCcEEEEE
Confidence            444 4654431 221 1  1110 1222222           2  666899999999   99998774

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=99.71  E-value=6.5e-17  Score=142.96  Aligned_cols=136  Identities=8%  Similarity=0.027  Sum_probs=102.6

Q ss_pred             hhccCCCCccc-CC-----CCCc----eecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEE
Q 014225          201 LLTNHDRGYLL-GH-----PPDE----KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFE  270 (428)
Q Consensus       201 ~~g~~~p~f~l-~~-----~g~~----~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  270 (428)
                      .+|.+.|...+ +.     +|.+    .++.++++||+++|+|||+||++|+.+.|.|.++.+    +         ++.
T Consensus        24 ~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~----~---------~~~   90 (184)
T TIGR01626        24 QVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKA----A---------KFP   90 (184)
T ss_pred             hcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHHHH----c---------CCC
Confidence            35888888766 33     3321    567788999999999999999999999999999833    2         567


Q ss_pred             E------EEEEcCCCHHHHHHHHh----cCCccccc---cCCcchhHHHHhcCcCccceE-EEECCCCcEEeccccchhh
Q 014225          271 V------VFVSTDRDQTSFESYFG----TMPWLALP---FGDPTIKELTKYFDVQGIPCL-VIIGPEGKTVTKQGRNLIN  336 (428)
Q Consensus       271 i------v~is~d~~~~~~~~~~~----~~~~~~~~---~~~d~~~~~~~~~~v~~~P~~-~lid~~G~i~~~~~~~~~~  336 (428)
                      +      ++|+.|+.......|++    +.. ..+|   +..|..+.+...|++.++|++ ||||++|+|+.+..|    
T Consensus        91 ~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~-~~~P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G----  165 (184)
T TIGR01626        91 PVKYQTTTIINADDAIVGTGMFVKSSAKKGK-KENPWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEG----  165 (184)
T ss_pred             cccccceEEEECccchhhHHHHHHHHHHHhc-ccCCcceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeC----
Confidence            7      99999976555444443    333 3444   777778889999999999988 899999999999654    


Q ss_pred             cccccCCCCChHHHHHHHHHHHHHH
Q 014225          337 LYQENAYPFTEAKLEFLEKQMEEEA  361 (428)
Q Consensus       337 ~~g~~~~p~~~~~~~~L~~~l~~~~  361 (428)
                             +.+++.++++...|++++
T Consensus       166 -------~l~~ee~e~~~~li~~ll  183 (184)
T TIGR01626       166 -------ALSDSDIQTVISLVNGLL  183 (184)
T ss_pred             -------CCCHHHHHHHHHHHHHHh
Confidence                   456666666666666654

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>PRK13191 putative peroxiredoxin; Provisional

Probab=99.70  E-value=9e-17  Score=147.14  Aligned_cols=140  Identities=9%  Similarity=0.115  Sum_probs=109.2

Q ss_pred             hhccCCCCccc-CCCCCceecccccCCcEEEE-EEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC
Q 014225          201 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGL-YFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR  278 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll-~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~  278 (428)
                      .+|.++|+|++ +.+|+ ....++++||+++| +||++||++|..+++.|.+++++|+++         +++|++||+|.
T Consensus         8 ~iG~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~---------g~~VigvS~Ds   77 (215)
T PRK13191          8 LIGEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL---------NTELIGLSVDS   77 (215)
T ss_pred             cCCCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC---------CCEEEEEECCC
Confidence            46999999999 88886 54445589997665 778999999999999999999999977         89999999996


Q ss_pred             CHH--HHHHHHhcC-C-ccccccCCcchhHHHHhcCcC-------ccceEEEECCCCcEEeccccchhhcccccCCCCCh
Q 014225          279 DQT--SFESYFGTM-P-WLALPFGDPTIKELTKYFDVQ-------GIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTE  347 (428)
Q Consensus       279 ~~~--~~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~v~-------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~  347 (428)
                      ...  +|.++.++. + -+.||++.|.+..+++.||+.       ..|++||||++|+|+.....++         +.. 
T Consensus        78 ~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~---------~~g-  147 (215)
T PRK13191         78 NISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPM---------EIG-  147 (215)
T ss_pred             HHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecCC---------CCC-
Confidence            432  466666531 1 377999999999999999973       4799999999999999754332         112 


Q ss_pred             HHHHHHHHHHHHH
Q 014225          348 AKLEFLEKQMEEE  360 (428)
Q Consensus       348 ~~~~~L~~~l~~~  360 (428)
                      +.++++.+.|+.+
T Consensus       148 r~~~eilr~l~al  160 (215)
T PRK13191        148 RNIDEILRAIRAL  160 (215)
T ss_pred             CCHHHHHHHHHHh
Confidence            3466777766654

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=99.70  E-value=4.4e-17  Score=140.21  Aligned_cols=117  Identities=17%  Similarity=0.223  Sum_probs=96.6

Q ss_pred             ccccccCc-cccCCCCEEecccCCCCEEEEEEecCC-ChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHH
Q 014225           38 LASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANW-YPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYR  115 (428)
Q Consensus        38 ~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~  115 (428)
                      +|+.+|+| +.+.+|+++++++++||+++|+||++| |++|+.++|.|++++++++  +  +.+++|+.|. ....+++.
T Consensus         2 ~G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~--~~vi~Is~d~-~~~~~~~~   76 (143)
T cd03014           2 VGDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--N--TVVLTISADL-PFAQKRWC   76 (143)
T ss_pred             CCCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--C--CEEEEEECCC-HHHHHHHH
Confidence            58899999 999999999999999999999999999 6999999999999999973  4  9999999986 44568888


Q ss_pred             hcCCCceecc-CChHHHHHHHhhcCCCC------CceEEEEcCCCCCCCcccccc
Q 014225          116 ACMPWLAVPY-SDLETKKALNRKFDIEG------IPCLVVLQPYDDKDDATLHDG  163 (428)
Q Consensus       116 ~~~~~~~~~~-~d~~~~~~l~~~~~v~~------~P~~~lid~~~~dG~i~~~~~  163 (428)
                      ++++...++. .|.. ...+.+.|++..      .|+++|||+   +|+|+....
T Consensus        77 ~~~~~~~~~~l~D~~-~~~~~~~~gv~~~~~~~~~~~~~iid~---~G~I~~~~~  127 (143)
T cd03014          77 GAEGVDNVTTLSDFR-DHSFGKAYGVLIKDLGLLARAVFVIDE---NGKVIYVEL  127 (143)
T ss_pred             HhcCCCCceEeecCc-ccHHHHHhCCeeccCCccceEEEEEcC---CCeEEEEEE
Confidence            8776433332 2321 168889999853      799999999   999987754

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=99.70  E-value=5e-17  Score=143.55  Aligned_cols=117  Identities=17%  Similarity=0.238  Sum_probs=99.4

Q ss_pred             ccccccCc-cccCCCCEEecccCCCCEEEEEEecCC-ChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHH
Q 014225           38 LASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANW-YPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYR  115 (428)
Q Consensus        38 ~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~  115 (428)
                      +|+.+|+| |.+.+|+.+++++++||+++|+||++| |++|..++|.|+++++++.  +  +++++||.|.. ...++|.
T Consensus        20 ~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~--~~vv~vs~D~~-~~~~~f~   94 (167)
T PRK00522         20 VGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--N--TVVLCISADLP-FAQKRFC   94 (167)
T ss_pred             CCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--C--cEEEEEeCCCH-HHHHHHH
Confidence            69999999 999999999999999999999999999 9999999999999999983  4  99999999854 5578899


Q ss_pred             hcCCCcee-ccCChHHHHHHHhhcCCCCCc---------eEEEEcCCCCCCCcccccc
Q 014225          116 ACMPWLAV-PYSDLETKKALNRKFDIEGIP---------CLVVLQPYDDKDDATLHDG  163 (428)
Q Consensus       116 ~~~~~~~~-~~~d~~~~~~l~~~~~v~~~P---------~~~lid~~~~dG~i~~~~~  163 (428)
                      ++++...+ .++|.. ...+++.||+...|         +++|||+   +|+|++...
T Consensus        95 ~~~~~~~~~~lsD~~-~~~~~~~~gv~~~~~~~~g~~~r~tfvId~---~G~I~~~~~  148 (167)
T PRK00522         95 GAEGLENVITLSDFR-DHSFGKAYGVAIAEGPLKGLLARAVFVLDE---NNKVVYSEL  148 (167)
T ss_pred             HhCCCCCceEeecCC-ccHHHHHhCCeecccccCCceeeEEEEECC---CCeEEEEEE
Confidence            88875433 333422 15899999998777         9999999   999987754

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.70  E-value=1.1e-16  Score=138.48  Aligned_cols=114  Identities=18%  Similarity=0.348  Sum_probs=96.8

Q ss_pred             CCCCccc-CCCCCceecccccC-CcEE-EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHH
Q 014225          205 HDRGYLL-GHPPDEKVPVSSLV-GKTV-GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQT  281 (428)
Q Consensus       205 ~~p~f~l-~~~g~~~v~l~~~~-gk~v-ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~  281 (428)
                      .+|+|++ +.+|+ .++++++. ++++ |++||++|||+|+.++|.|.++++++++.         ++.+|+|+.|.. +
T Consensus         1 ~~p~f~l~~~~g~-~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~---------~v~vv~V~~~~~-~   69 (149)
T cd02970           1 TAPDFELPDAGGE-TVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDAL---------GVELVAVGPESP-E   69 (149)
T ss_pred             CCCCccccCCCCC-EEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhc---------CeEEEEEeCCCH-H
Confidence            3689999 99999 99999975 4555 55556999999999999999999999876         799999999854 4


Q ss_pred             HHHHHHhcCCccccccCCcchhHHHHhcCcC-----------------------------ccceEEEECCCCcEEecc
Q 014225          282 SFESYFGTMPWLALPFGDPTIKELTKYFDVQ-----------------------------GIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~-----------------------------~~P~~~lid~~G~i~~~~  330 (428)
                      ...+|.+..+ +++|+..|.+..+.+.||+.                             .+|++||||++|+|++.+
T Consensus        70 ~~~~~~~~~~-~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~  146 (149)
T cd02970          70 KLEAFDKGKF-LPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAH  146 (149)
T ss_pred             HHHHHHHhcC-CCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEe
Confidence            4556666655 78999999999999999984                             799999999999999875

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.70  E-value=3.1e-17  Score=145.81  Aligned_cols=114  Identities=16%  Similarity=0.214  Sum_probs=93.8

Q ss_pred             cccccccCc-cccCCCC--EEecccC-CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHH
Q 014225           37 LLASKDRDY-LLNQHGT--QVKVSDL-EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN  112 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~--~v~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~  112 (428)
                      .+|..+|+| +.+.+|+  +++++++ +||+++|+||++||++|+.++|.+++++++    +  +++++|+.+...+...
T Consensus        35 ~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~----~--~~vi~V~~~~~~~~~~  108 (173)
T TIGR00385        35 LIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAKD----G--LPIVGVDYKDQSQNAL  108 (173)
T ss_pred             hcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc----C--CEEEEEECCCChHHHH
Confidence            568999999 9999997  4555565 799999999999999999999999887643    4  8999999988777788


Q ss_pred             HHHhcCCCceecc-CChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          113 NYRACMPWLAVPY-SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       113 ~~~~~~~~~~~~~-~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +|++++++.+.++ .|..  ..+.+.|++.++|++++||+   +|++++.
T Consensus       109 ~~~~~~~~~f~~v~~D~~--~~~~~~~~v~~~P~~~~id~---~G~i~~~  153 (173)
T TIGR00385       109 KFLKELGNPYQAILIDPN--GKLGLDLGVYGAPETFLVDG---NGVILYR  153 (173)
T ss_pred             HHHHHcCCCCceEEECCC--CchHHhcCCeeCCeEEEEcC---CceEEEE
Confidence            8998877533211 2443  68899999999999999999   9998866

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=99.70  E-value=1.4e-16  Score=145.19  Aligned_cols=138  Identities=11%  Similarity=0.131  Sum_probs=104.5

Q ss_pred             hccCCCCccc-CCCCCceecccccCC-cEE-EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSLVG-KTV-GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR  278 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~~g-k~v-ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~  278 (428)
                      +|..+|+|++ +.+|  .+++++++| |++ |++||++|||.|..+++.|.+++++|+++         +++|++||+|.
T Consensus         1 vG~~aP~F~~~~~~g--~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~---------gv~vigvS~D~   69 (203)
T cd03016           1 LGDTAPNFEADTTHG--PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKR---------NVKLIGLSVDS   69 (203)
T ss_pred             CcCCCCCeEEecCCC--cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHc---------CCEEEEEECCC
Confidence            4889999999 7775  589999998 654 55788999999999999999999999877         89999999995


Q ss_pred             CH--HHHHHHHhcC--CccccccCCcchhHHHHhcCcC--------ccceEEEECCCCcEEeccccchhhcccccCCCCC
Q 014225          279 DQ--TSFESYFGTM--PWLALPFGDPTIKELTKYFDVQ--------GIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFT  346 (428)
Q Consensus       279 ~~--~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~v~--------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~  346 (428)
                      ..  .+|.+.+...  .-+.||++.|.+..+++.||+.        ..|++||||++|+|+......+       .   .
T Consensus        70 ~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~-------~---~  139 (203)
T cd03016          70 VESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPA-------T---T  139 (203)
T ss_pred             HHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecCC-------C---C
Confidence            32  2233322221  3478999999999999999985        2457999999999998853322       0   1


Q ss_pred             hHHHHHHHHHHHHH
Q 014225          347 EAKLEFLEKQMEEE  360 (428)
Q Consensus       347 ~~~~~~L~~~l~~~  360 (428)
                      ....++|.+.|+++
T Consensus       140 gr~~~ell~~l~~l  153 (203)
T cd03016         140 GRNFDEILRVVDAL  153 (203)
T ss_pred             CCCHHHHHHHHHHH
Confidence            22356666666554

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=99.69  E-value=1.6e-16  Score=144.46  Aligned_cols=120  Identities=18%  Similarity=0.250  Sum_probs=99.7

Q ss_pred             hhccCCCCccc-----CCCCCceecccccCCcEEEEEEec-cCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEE
Q 014225          201 LLTNHDRGYLL-----GHPPDEKVPVSSLVGKTVGLYFSA-RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV  274 (428)
Q Consensus       201 ~~g~~~p~f~l-----~~~g~~~v~l~~~~gk~vll~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~i  274 (428)
                      .+|.++|+|++     +.+|. .+++++++||+++|+||+ .||++|..+++.|.+++++|++.         +++|++|
T Consensus         7 ~~G~~aPdF~~~~~~~~~~~~-~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~---------g~~vv~I   76 (199)
T PTZ00253          7 KINHPAPSFEEVALMPNGSFK-KISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL---------NCEVLAC   76 (199)
T ss_pred             ccCCcCCCCEeeccccCCCCc-EEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc---------CCEEEEE
Confidence            36999999995     35667 899999999999999995 78999999999999999999987         8999999


Q ss_pred             EcCCCHHHHHHHHhc------CCccccccCCcchhHHHHhcCcC------ccceEEEECCCCcEEeccc
Q 014225          275 STDRDQTSFESYFGT------MPWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       275 s~d~~~~~~~~~~~~------~~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~  331 (428)
                      |+|.... ..++...      .+.++||++.|.+.++++.||+.      .+|++||||++|+|+....
T Consensus        77 S~d~~~~-~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~  144 (199)
T PTZ00253         77 SMDSEYA-HLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITV  144 (199)
T ss_pred             eCCCHHH-HHHHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEe
Confidence            9996432 2222211      22378999999999999999985      4699999999999998753

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=99.69  E-value=1.1e-16  Score=137.41  Aligned_cols=116  Identities=25%  Similarity=0.374  Sum_probs=98.6

Q ss_pred             CCCccc-CCCCCceecccccCCcEEEEEEeccCChh-HHhhhHHHHHHHHHHHhhhhhcCCCC-CCEEEEEEEcCC---C
Q 014225          206 DRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIP-CEKFMPKLLSIYQKIKQNLVEKGDAL-EDFEVVFVSTDR---D  279 (428)
Q Consensus       206 ~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~-C~~~~~~l~~l~~~~~~~~~~~~~~~-~~~~iv~is~d~---~  279 (428)
                      +|+|++ +.+|+ .+++++++||+++|+||++||++ |..+++.|+++++++++.       + .++++++|++|.   +
T Consensus         2 ~p~f~l~~~~g~-~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~-------~~~~v~~v~vs~d~~~d~   73 (142)
T cd02968           2 GPDFTLTDQDGR-PVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGAD-------GGDDVQVVFISVDPERDT   73 (142)
T ss_pred             CCceEEEcCCCC-EEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHh-------hcCceEEEEEEECCCCCC
Confidence            689999 99999 99999999999999999999997 999999999999999875       2 359999999985   4


Q ss_pred             HHHHHHHHhcCCccccccCCcc---hhHHHHhcCcCcc--------------ceEEEECCCCcEEecc
Q 014225          280 QTSFESYFGTMPWLALPFGDPT---IKELTKYFDVQGI--------------PCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~v~~~--------------P~~~lid~~G~i~~~~  330 (428)
                      .+.+++|.++++ .+++++.+.   ...+++.||+...              |++||||++|+|+.++
T Consensus        74 ~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~  140 (142)
T cd02968          74 PEVLKAYAKAFG-PGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYY  140 (142)
T ss_pred             HHHHHHHHHHhC-CCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEee
Confidence            578889998876 566666554   4788999997544              5699999999999874

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=99.69  E-value=1.2e-16  Score=136.85  Aligned_cols=114  Identities=26%  Similarity=0.366  Sum_probs=98.0

Q ss_pred             cccCc-cccCCCCEEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcC
Q 014225           41 KDRDY-LLNQHGTQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACM  118 (428)
Q Consensus        41 ~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~  118 (428)
                      .+|+| +.+.+|+.+++++++||+++|+|| ++||+.|..++|.|+++++++++.+  +++++|+.|. .+.+++|.+.+
T Consensus         2 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vv~is~d~-~~~~~~~~~~~   78 (140)
T cd03017           2 KAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALG--AVVIGVSPDS-VESHAKFAEKY   78 (140)
T ss_pred             CCCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCC-HHHHHHHHHHh
Confidence            58999 999999999999999999999999 5899999999999999999998876  9999999985 46688998876


Q ss_pred             CCceeccCChHHHHHHHhhcCCCCC---------ceEEEEcCCCCCCCccccc
Q 014225          119 PWLAVPYSDLETKKALNRKFDIEGI---------PCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       119 ~~~~~~~~d~~~~~~l~~~~~v~~~---------P~~~lid~~~~dG~i~~~~  162 (428)
                      ++....+.|.+  ..+.+.|++...         |++++||+   +|++++..
T Consensus        79 ~~~~~~l~D~~--~~~~~~~gv~~~~~~~~~~~~p~~~lid~---~G~v~~~~  126 (140)
T cd03017          79 GLPFPLLSDPD--GKLAKAYGVWGEKKKKYMGIERSTFLIDP---DGKIVKVW  126 (140)
T ss_pred             CCCceEEECCc--cHHHHHhCCccccccccCCcceeEEEECC---CCEEEEEE
Confidence            64322233444  689999999988         99999999   99998764

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=99.68  E-value=1.4e-16  Score=133.31  Aligned_cols=107  Identities=22%  Similarity=0.377  Sum_probs=95.2

Q ss_pred             CCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC-CHHHHH
Q 014225          207 RGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-DQTSFE  284 (428)
Q Consensus       207 p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~-~~~~~~  284 (428)
                      |+|.+ +.+|+ .+++++++||+++|+||++||++|+.++|.|.+++++              +.+++|++|. +.++++
T Consensus         1 p~f~l~~~~g~-~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~--------------~~~i~i~~~~~~~~~~~   65 (123)
T cd03011           1 PLFTATTLDGE-QFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD--------------YPVVSVALRSGDDGAVA   65 (123)
T ss_pred             CCceeecCCCC-EeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh--------------CCEEEEEccCCCHHHHH
Confidence            78999 99999 9999999999999999999999999999999988765              3578888876 478899


Q ss_pred             HHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEecc
Q 014225          285 SYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       285 ~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      ++.++++ +.+|+..|.+..+.+.|++.++|+++|||++| ++++.
T Consensus        66 ~~~~~~~-~~~~~~~d~~~~~~~~~~i~~~P~~~vid~~g-i~~~~  109 (123)
T cd03011          66 RFMQKKG-YGFPVINDPDGVISARWGVSVTPAIVIVDPGG-IVFVT  109 (123)
T ss_pred             HHHHHcC-CCccEEECCCcHHHHhCCCCcccEEEEEcCCC-eEEEE
Confidence            9999887 68888888888999999999999999999999 77764

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=99.68  E-value=2.1e-16  Score=136.87  Aligned_cols=120  Identities=20%  Similarity=0.258  Sum_probs=98.4

Q ss_pred             ccccccCc-cccCCCCEEecccCCC-CEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHH
Q 014225           38 LASKDRDY-LLNQHGTQVKVSDLEG-KVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNY  114 (428)
Q Consensus        38 ~g~~~pdf-l~~~~G~~v~l~~~~g-k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~  114 (428)
                      +|..+|+| +.+.+|+.+++++++| |+++|.|| ++||++|...+|.|+++++++++.+  +.+++|+.|. .+..++|
T Consensus         3 ~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--v~vi~vs~d~-~~~~~~~   79 (149)
T cd03018           3 VGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAG--AEVLGISVDS-PFSLRAW   79 (149)
T ss_pred             CCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCC--CEEEEecCCC-HHHHHHH
Confidence            58899999 9999999999999999 99888888 9999999999999999999999876  9999999875 4568888


Q ss_pred             HhcCCCceeccCChHHHHHHHhhcCCCC----C--ceEEEEcCCCCCCCcccccc
Q 014225          115 RACMPWLAVPYSDLETKKALNRKFDIEG----I--PCLVVLQPYDDKDDATLHDG  163 (428)
Q Consensus       115 ~~~~~~~~~~~~d~~~~~~l~~~~~v~~----~--P~~~lid~~~~dG~i~~~~~  163 (428)
                      .+++++...-++|.+....+.+.|++..    +  |++++||+   +|++++...
T Consensus        80 ~~~~~~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~---~G~v~~~~~  131 (149)
T cd03018          80 AEENGLTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDR---DGIIRYAWV  131 (149)
T ss_pred             HHhcCCCceEecCCCchhHHHHHhCCccccCCCccceEEEECC---CCEEEEEEe
Confidence            8876643222334322267888999873    3  48999999   999887743

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=99.68  E-value=1.6e-16  Score=138.55  Aligned_cols=116  Identities=20%  Similarity=0.296  Sum_probs=97.2

Q ss_pred             ccccccCc-cccCCCCEEecccCCCCEEEEEEecC-CChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHH
Q 014225           38 LASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSAN-WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYR  115 (428)
Q Consensus        38 ~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~  115 (428)
                      +|..+|+| +.+.+|+.+++++++||+++|+||++ ||+.|+.+++.|+++++++++.+  +++|+|+.|. .+.+++|.
T Consensus         6 ~g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~--v~vi~Is~d~-~~~~~~~~   82 (154)
T PRK09437          6 AGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAG--VVVLGISTDK-PEKLSRFA   82 (154)
T ss_pred             CCCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCC-HHHHHHHH
Confidence            58899999 99999999999999999999999986 67889999999999999999887  9999999985 57788999


Q ss_pred             hcCCCceeccCChHHHHHHHhhcCCCCC------------ceEEEEcCCCCCCCcccc
Q 014225          116 ACMPWLAVPYSDLETKKALNRKFDIEGI------------PCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       116 ~~~~~~~~~~~d~~~~~~l~~~~~v~~~------------P~~~lid~~~~dG~i~~~  161 (428)
                      ++++....-+.|..  ..+.+.|++...            |+++|||+   +|+|+..
T Consensus        83 ~~~~~~~~~l~D~~--~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~---~G~i~~~  135 (154)
T PRK09437         83 EKELLNFTLLSDED--HQVAEQFGVWGEKKFMGKTYDGIHRISFLIDA---DGKIEHV  135 (154)
T ss_pred             HHhCCCCeEEECCC--chHHHHhCCCcccccccccccCcceEEEEECC---CCEEEEE
Confidence            87654222222433  678899998654            67899999   9998866

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.68  E-value=2.9e-16  Score=173.98  Aligned_cols=119  Identities=22%  Similarity=0.292  Sum_probs=104.6

Q ss_pred             hccCCCCccc-C--CCCCceecc-cccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEc-
Q 014225          202 LTNHDRGYLL-G--HPPDEKVPV-SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST-  276 (428)
Q Consensus       202 ~g~~~p~f~l-~--~~g~~~v~l-~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~-  276 (428)
                      .|.++|+|.. +  .+|. .+++ ++++||+|||+|||+||++|+.++|.|++++++|+++         ++.||+|+. 
T Consensus       393 ~g~~~p~f~~~~~~~~g~-~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~---------~~~vvgV~~~  462 (1057)
T PLN02919        393 TATKVPEFPPKLDWLNTA-PLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ---------PFTVVGVHSA  462 (1057)
T ss_pred             cCCcCCCCcccccccCCc-cccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC---------CeEEEEEecc
Confidence            5889999987 4  6888 8988 5899999999999999999999999999999999866         799999974 


Q ss_pred             --CC--CHHHHHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEeccc
Q 014225          277 --DR--DQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       277 --d~--~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~  331 (428)
                        |.  +.+++++++.+.+ +.+|+..|....+.+.|+|.++|+++|||++|+++.+..
T Consensus       463 ~~D~~~~~~~~~~~~~~~~-i~~pvv~D~~~~~~~~~~V~~iPt~ilid~~G~iv~~~~  520 (1057)
T PLN02919        463 KFDNEKDLEAIRNAVLRYN-ISHPVVNDGDMYLWRELGVSSWPTFAVVSPNGKLIAQLS  520 (1057)
T ss_pred             cccccccHHHHHHHHHHhC-CCccEEECCchHHHHhcCCCccceEEEECCCCeEEEEEe
Confidence              32  4678888988776 678888888889999999999999999999999998843

>PTZ00256 glutathione peroxidase; Provisional

Probab=99.68  E-value=9e-17  Score=144.08  Aligned_cols=119  Identities=13%  Similarity=0.202  Sum_probs=88.9

Q ss_pred             cccccCc-cccCCCCEEecccCCCCEE-EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCC-------ChH
Q 014225           39 ASKDRDY-LLNQHGTQVKVSDLEGKVT-ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-------DLN  109 (428)
Q Consensus        39 g~~~pdf-l~~~~G~~v~l~~~~gk~v-lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~-------~~~  109 (428)
                      +..+|+| +.+.+|+++++++++||++ ++.|||+||++|+.++|.|++++++|+++|  ++|++|+.|.       +.+
T Consensus        17 ~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~g--v~vv~vs~~~~~~~~~~~~~   94 (183)
T PTZ00256         17 TKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQG--LEILAFPCNQFMEQEPWDEP   94 (183)
T ss_pred             CCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCC--cEEEEEecccccccCCCCHH
Confidence            4568999 9999999999999999954 566799999999999999999999999887  9999999752       346


Q ss_pred             HHHHHHh-cCCCceeccCC--hH--HHHHHH------------hhcCCCCCce---EEEEcCCCCCCCccccc
Q 014225          110 AFNNYRA-CMPWLAVPYSD--LE--TKKALN------------RKFDIEGIPC---LVVLQPYDDKDDATLHD  162 (428)
Q Consensus       110 ~~~~~~~-~~~~~~~~~~d--~~--~~~~l~------------~~~~v~~~P~---~~lid~~~~dG~i~~~~  162 (428)
                      ...+|++ ++++.+..+.+  .+  ....+.            ..+++.++|+   ++|||+   +|+|+.+.
T Consensus        95 ~~~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~---~G~Iv~~~  164 (183)
T PTZ00256         95 EIKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDG---QGKVVKYF  164 (183)
T ss_pred             HHHHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECC---CCCEEEEE
Confidence            6788875 55542211211  11  001222            1236778995   699999   99998764

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=99.67  E-value=3.6e-16  Score=134.20  Aligned_cols=117  Identities=26%  Similarity=0.470  Sum_probs=97.1

Q ss_pred             cccCc-cccCCCCEEecccCCCCEEEEEEecCCChh-hhhhHHHHHHHHHHHhcCC-CcEEEEEEecCC---ChHHHHHH
Q 014225           41 KDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPP-CGNFTGVLVDVYEELRNNG-SDFEVVFVSSDE---DLNAFNNY  114 (428)
Q Consensus        41 ~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~~~~-~~~~ii~vs~D~---~~~~~~~~  114 (428)
                      .+|+| +.+.+|+++++++++||+++|+||++||++ |..+++.|+++++++++.+ .++++++|+.|.   +.+.+++|
T Consensus         1 ~~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~   80 (142)
T cd02968           1 IGPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAY   80 (142)
T ss_pred             CCCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHH
Confidence            37899 999999999999999999999999999998 9999999999999998864 359999999985   35778889


Q ss_pred             HhcCC--CceeccCChHHHHHHHhhcCCCC--------------CceEEEEcCCCCCCCcccc
Q 014225          115 RACMP--WLAVPYSDLETKKALNRKFDIEG--------------IPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       115 ~~~~~--~~~~~~~d~~~~~~l~~~~~v~~--------------~P~~~lid~~~~dG~i~~~  161 (428)
                      +++++  |..+.. ..+....+++.||+..              .|+++|||+   +|+++..
T Consensus        81 ~~~~~~~~~~l~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~---~G~i~~~  139 (142)
T cd02968          81 AKAFGPGWIGLTG-TPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDP---DGKLVRY  139 (142)
T ss_pred             HHHhCCCcEEEEC-CHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECC---CCCEEEe
Confidence            98764  655554 2333478999998653              357999999   9998754

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=99.66  E-value=3e-16  Score=139.56  Aligned_cols=116  Identities=20%  Similarity=0.324  Sum_probs=93.9

Q ss_pred             ccccccCc-cccCCC----CEEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHH
Q 014225           38 LASKDRDY-LLNQHG----TQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAF  111 (428)
Q Consensus        38 ~g~~~pdf-l~~~~G----~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~  111 (428)
                      +|+.+|+| +.+.+|    +.+++++++||+++|+|| ++||++|..++|.|++++++|++.+  +.+++|+.|.... .
T Consensus         1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~--v~vv~Is~d~~~~-~   77 (173)
T cd03015           1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLN--AEVLGVSTDSHFS-H   77 (173)
T ss_pred             CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEecCCHHH-H
Confidence            48899999 888877    789999999999999999 8999999999999999999999877  9999999886432 2


Q ss_pred             HHHHhc---------CCCceeccCChHHHHHHHhhcCCC------CCceEEEEcCCCCCCCcccccc
Q 014225          112 NNYRAC---------MPWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHDG  163 (428)
Q Consensus       112 ~~~~~~---------~~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~dG~i~~~~~  163 (428)
                      +.+.+.         .+|..+  .|.+  ..+.+.|++.      .+|+++|||+   +|++++...
T Consensus        78 ~~~~~~~~~~~~~~~~~f~~l--~D~~--~~~~~~~gv~~~~~~~~~p~~~lID~---~G~I~~~~~  137 (173)
T cd03015          78 LAWRNTPRKEGGLGKINFPLL--ADPK--KKISRDYGVLDEEEGVALRGTFIIDP---EGIIRHITV  137 (173)
T ss_pred             HHHHHhhhhhCCccCcceeEE--ECCc--hhHHHHhCCccccCCceeeEEEEECC---CCeEEEEEe
Confidence            333332         223222  2443  7899999986      6789999999   999987753

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=99.66  E-value=1.5e-16  Score=138.47  Aligned_cols=115  Identities=13%  Similarity=0.151  Sum_probs=86.5

Q ss_pred             cCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecC-------CChHHHHHH
Q 014225           43 RDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-------EDLNAFNNY  114 (428)
Q Consensus        43 pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D-------~~~~~~~~~  114 (428)
                      -+| |.+.+|+++++++++||+++|+|||+||++|+.++|.|++++++|+++|  +++++|+.+       .+.+..++|
T Consensus         3 ~~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~--~~v~~i~~~~~~~~~~d~~~~~~~f   80 (153)
T TIGR02540         3 YSFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSH--FNVLAFPCNQFGESEPDSSKEIESF   80 (153)
T ss_pred             ccceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCC--eEEEEEeccccccCCCCCHHHHHHH
Confidence            467 8899999999999999999999999999999999999999999999887  999999852       345678889


Q ss_pred             Hhc-CCCceeccCCh---HHHHHHHhhcC---CCCCce----EEEEcCCCCCCCccccc
Q 014225          115 RAC-MPWLAVPYSDL---ETKKALNRKFD---IEGIPC----LVVLQPYDDKDDATLHD  162 (428)
Q Consensus       115 ~~~-~~~~~~~~~d~---~~~~~l~~~~~---v~~~P~----~~lid~~~~dG~i~~~~  162 (428)
                      +++ +++.+..+.+.   +........|.   ...+|+    ++|||+   +|+++...
T Consensus        81 ~~~~~~~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~---~G~v~~~~  136 (153)
T TIGR02540        81 ARRNYGVTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNP---EGQVVKFW  136 (153)
T ss_pred             HHHhcCCCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcC---CCcEEEEE
Confidence            874 55422222120   00011111222   245898    999999   99998663

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>PRK13189 peroxiredoxin; Provisional

Probab=99.66  E-value=7.7e-16  Score=141.80  Aligned_cols=120  Identities=13%  Similarity=0.185  Sum_probs=96.4

Q ss_pred             hhccCCCCccc-CCCCCceecccc-cCCcEEE-EEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC
Q 014225          201 LLTNHDRGYLL-GHPPDEKVPVSS-LVGKTVG-LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD  277 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g~~~v~l~~-~~gk~vl-l~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d  277 (428)
                      .+|..+|+|++ +..|.  +.+++ ++||+++ ++||++|||.|..+++.|.+++++|+++         +++|++||+|
T Consensus        10 ~vG~~aPdF~~~~~~g~--~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~---------~v~VigvS~D   78 (222)
T PRK13189         10 LIGDKFPEFEVKTTHGP--IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL---------NTELIGLSID   78 (222)
T ss_pred             cCCCcCCCcEeEcCCCC--EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc---------CCEEEEEECC
Confidence            36999999999 77775  56766 5999655 5677999999999999999999999877         8999999999


Q ss_pred             CCH--HHHHHHHhc-CC-ccccccCCcchhHHHHhcCcC-------ccceEEEECCCCcEEeccc
Q 014225          278 RDQ--TSFESYFGT-MP-WLALPFGDPTIKELTKYFDVQ-------GIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       278 ~~~--~~~~~~~~~-~~-~~~~~~~~d~~~~~~~~~~v~-------~~P~~~lid~~G~i~~~~~  331 (428)
                      ...  .+|.+.+.+ .+ -+.||+..|.+..+++.||+.       .+|++||||++|+|+....
T Consensus        79 ~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~  143 (222)
T PRK13189         79 QVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILY  143 (222)
T ss_pred             CHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEe
Confidence            543  233333322 22 368999999999999999985       5799999999999988753

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=99.66  E-value=7.4e-16  Score=126.10  Aligned_cols=111  Identities=27%  Similarity=0.457  Sum_probs=96.3

Q ss_pred             Cc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCC-hHHHHHHHhcCCCc
Q 014225           44 DY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED-LNAFNNYRACMPWL  121 (428)
Q Consensus        44 df-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~-~~~~~~~~~~~~~~  121 (428)
                      +| +.+.+|+.+++++++||+++|+||++||++|+..++.|.++.+++++.+  +.+++|+.|.. .+.++++++++++.
T Consensus         1 ~~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~~~v~~d~~~~~~~~~~~~~~~~~   78 (116)
T cd02966           1 DFSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDG--VEVVGVNVDDDDPAAVKAFLKKYGIT   78 (116)
T ss_pred             CccccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCC--eEEEEEECCCCCHHHHHHHHHHcCCC
Confidence            46 7889999999999999999999999999999999999999999997554  99999999987 89999999988743


Q ss_pred             eeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          122 AVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       122 ~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      ...+.+..  ..+.+.|++.++|+++++|+   +|+++..
T Consensus        79 ~~~~~~~~--~~~~~~~~~~~~P~~~l~d~---~g~v~~~  113 (116)
T cd02966          79 FPVLLDPD--GELAKAYGVRGLPTTFLIDR---DGRIRAR  113 (116)
T ss_pred             cceEEcCc--chHHHhcCcCccceEEEECC---CCcEEEE
Confidence            33332332  78999999999999999999   9988754

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=2.5e-15  Score=150.33  Aligned_cols=244  Identities=20%  Similarity=0.268  Sum_probs=147.1

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+++++|.||++||++|.+..|.+.++.+.+++.   +.+..|  |.+..                      ..+++.|+
T Consensus        46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~---~~~~~v--d~~~~----------------------~~~~~~y~   98 (383)
T KOG0191|consen   46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK---VKIGAV--DCDEH----------------------KDLCEKYG   98 (383)
T ss_pred             cCCceEEEEECCCCcchhhhchHHHHHHHHhcCc---eEEEEe--Cchhh----------------------HHHHHhcC
Confidence            4579999999999999999999999999999873   445544  43333                      89999999


Q ss_pred             CCCCceEEEEcCCCCCCCcccccchhhhhhcccCccccchhhHHHHHHHHHHHHHHHHHhhhhccCCCC--cccCCCCCc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRG--YLLGHPPDE  217 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~~~~~~i~~~g~~~~p~t~~~~~~l~~~~~~~~~~~~~~~~~g~~~p~--f~l~~~g~~  217 (428)
                      +.++|++.++.+   +..++....            ....+.+.....        ..+...+....+.  +.++..+- 
T Consensus        99 i~gfPtl~~f~~---~~~~~~~~~------------~~~~~~~~~~~~--------~~~~~~~~~~~~~~v~~l~~~~~-  154 (383)
T KOG0191|consen   99 IQGFPTLKVFRP---GKKPIDYSG------------PRNAESLAEFLI--------KELEPSVKKLVEGEVFELTKDNF-  154 (383)
T ss_pred             CccCcEEEEEcC---CCceeeccC------------cccHHHHHHHHH--------HhhccccccccCCceEEccccch-
Confidence            999999999997   422322211            111111111111        0111111111111  11111111 


Q ss_pred             eecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCcccccc
Q 014225          218 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF  297 (428)
Q Consensus       218 ~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~  297 (428)
                      . ..-......+++.|++|||++|+.+.|.+.++...++..        ..+.+..+..+.                   
T Consensus       155 ~-~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~--------~~v~~~~~d~~~-------------------  206 (383)
T KOG0191|consen  155 D-ETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSK--------ENVELGKIDATV-------------------  206 (383)
T ss_pred             h-hhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccC--------cceEEEeeccch-------------------
Confidence            0 001112456899999999999999999999999988642        257777776652                   


Q ss_pred             CCcchhHHHHhcCcCccceEEEECCCCc-EEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhcC--CCCcccccc-
Q 014225          298 GDPTIKELTKYFDVQGIPCLVIIGPEGK-TVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNL--PRSEFHIGH-  373 (428)
Q Consensus       298 ~~d~~~~~~~~~~v~~~P~~~lid~~G~-i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~--~~~~~~~~~-  373 (428)
                          ...++..++|.++|++.++-++.. +.+..+               .+..+.+...+++.....  +..+..... 
T Consensus       207 ----~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~---------------~R~~~~i~~~v~~~~~~~~~~~~~~~~~~~  267 (383)
T KOG0191|consen  207 ----HKSLASRLEVRGYPTLKLFPPGEEDIYYYSG---------------LRDSDSIVSFVEKKERRNIPEPELKEIEDK  267 (383)
T ss_pred             ----HHHHhhhhcccCCceEEEecCCCcccccccc---------------cccHHHHHHHHHhhcCCCCCCcccccccCc
Confidence                267889999999999999955556 333322               233455666665554431  222221111 


Q ss_pred             ----ccceee----------eeccCCCCCcccccccCCCCce
Q 014225          374 ----RHELNL----------VSEGTGGGPFICCDCDEQGSGW  401 (428)
Q Consensus       374 ----~~~~~~----------~~~~~~~~~~~c~~C~~~g~~~  401 (428)
                          .+.+..          ..+-....++||.||....+.|
T Consensus       268 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (383)
T KOG0191|consen  268 DTFSPTFLDTAEFLDSLEKKKNKFVKFYAPWCGHCGGFAPVY  309 (383)
T ss_pred             cccccchhhhhhhhhhhHHhhhhHhhhhcchhhcccccchhH
Confidence                111110          0123456688999998877655

>TIGR03137 AhpC peroxiredoxin

Probab=99.65  E-value=4.2e-16  Score=140.21  Aligned_cols=116  Identities=22%  Similarity=0.376  Sum_probs=93.4

Q ss_pred             cccccccCc-ccc-CCCC--EEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHH
Q 014225           37 LLASKDRDY-LLN-QHGT--QVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAF  111 (428)
Q Consensus        37 ~~g~~~pdf-l~~-~~G~--~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~  111 (428)
                      .+|+.+|+| +.+ .+|+  .+++++++||+++|+|| ++||++|..++|.|++++++|++.|  +++++||.|... ..
T Consensus         3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~g--v~vi~VS~D~~~-~~   79 (187)
T TIGR03137         3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLG--VEVYSVSTDTHF-VH   79 (187)
T ss_pred             ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcC--CcEEEEeCCCHH-HH
Confidence            579999999 887 5776  68888999999999999 9999999999999999999999887  999999998753 23


Q ss_pred             HHHHhc------CCCceeccCChHHHHHHHhhcCCC------CCceEEEEcCCCCCCCccccc
Q 014225          112 NNYRAC------MPWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       112 ~~~~~~------~~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~dG~i~~~~  162 (428)
                      ++|.+.      +++..  ++|.+  ..+++.||+.      ..|+++|||+   +|+|+...
T Consensus        80 ~~~~~~~~~~~~l~fpl--lsD~~--~~~a~~~gv~~~~~g~~~p~tfiID~---~G~I~~~~  135 (187)
T TIGR03137        80 KAWHDTSEAIGKITYPM--LGDPT--GVLTRNFGVLIEEAGLADRGTFVIDP---EGVIQAVE  135 (187)
T ss_pred             HHHHhhhhhccCcceeE--EECCc--cHHHHHhCCcccCCCceeeEEEEECC---CCEEEEEE
Confidence            333332      23221  23443  7999999986      4699999999   99998764

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=99.64  E-value=1.1e-15  Score=130.72  Aligned_cols=116  Identities=22%  Similarity=0.296  Sum_probs=96.5

Q ss_pred             cccCc-cccCCCCEEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcC
Q 014225           41 KDRDY-LLNQHGTQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACM  118 (428)
Q Consensus        41 ~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~  118 (428)
                      ++|+| +.+.+|+++++++++||+++|+|| ++||++|...+|.|++++++++..+  +.+++|+.|. .+..+++.+++
T Consensus         1 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--~~~i~is~d~-~~~~~~~~~~~   77 (140)
T cd02971           1 KAPDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGG--AEVLGVSVDS-PFSHKAWAEKE   77 (140)
T ss_pred             CCCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCC-HHHHHHHHhcc
Confidence            37899 999999999999999999999999 7899999999999999999998766  9999999874 45678888877


Q ss_pred             -CCceeccCChHHHHHHHhhcCCCCCc---------eEEEEcCCCCCCCcccccch
Q 014225          119 -PWLAVPYSDLETKKALNRKFDIEGIP---------CLVVLQPYDDKDDATLHDGV  164 (428)
Q Consensus       119 -~~~~~~~~d~~~~~~l~~~~~v~~~P---------~~~lid~~~~dG~i~~~~~~  164 (428)
                       +.....+.|.+  ..+.+.|++...|         ++++||+   +|++++....
T Consensus        78 ~~~~~~~l~D~~--~~~~~~~g~~~~~~~~~~~~~p~~~lid~---~g~i~~~~~~  128 (140)
T cd02971          78 GGLNFPLLSDPD--GEFAKAYGVLIEKSAGGGLAARATFIIDP---DGKIRYVEVE  128 (140)
T ss_pred             cCCCceEEECCC--hHHHHHcCCccccccccCceeEEEEEECC---CCcEEEEEec
Confidence             43222233444  6899999988665         8999999   9999877443

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=99.64  E-value=1.8e-15  Score=133.02  Aligned_cols=96  Identities=19%  Similarity=0.274  Sum_probs=80.0

Q ss_pred             cCCCCcccCCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHH
Q 014225          204 NHDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSF  283 (428)
Q Consensus       204 ~~~p~f~l~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~  283 (428)
                      .+.|+|.+ .+|+ .+++++++    +|+||++|||+|++++|.|++++++|            +++|++|++|...+  
T Consensus        53 ~~~~~f~l-~dG~-~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~------------g~~Vi~Vs~D~~~~--  112 (181)
T PRK13728         53 PAPRWFRL-SNGR-QVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY------------GFSVFPYTLDGQGD--  112 (181)
T ss_pred             CCCCccCC-CCCC-EeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc------------CCEEEEEEeCCCCC--
Confidence            35667875 5888 99999997    77799999999999999999999887            37999999986532  


Q ss_pred             HHHHhcCCccccccCCc-chhHHHHhcCc--CccceEEEECCCCcEEe
Q 014225          284 ESYFGTMPWLALPFGDP-TIKELTKYFDV--QGIPCLVIIGPEGKTVT  328 (428)
Q Consensus       284 ~~~~~~~~~~~~~~~~d-~~~~~~~~~~v--~~~P~~~lid~~G~i~~  328 (428)
                               ..||...| ....+.+.|++  .++|++||||++|+++.
T Consensus       113 ---------~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~  151 (181)
T PRK13728        113 ---------TAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL  151 (181)
T ss_pred             ---------CCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence                     57888764 55677889995  69999999999999864

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=99.64  E-value=8.1e-16  Score=128.63  Aligned_cols=104  Identities=19%  Similarity=0.399  Sum_probs=87.4

Q ss_pred             cCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCC-hHHHHHHHhcCCC
Q 014225           43 RDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED-LNAFNNYRACMPW  120 (428)
Q Consensus        43 pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~-~~~~~~~~~~~~~  120 (428)
                      |+| +++.+|+.+++++++||+++|+||++||++|+.++|.|++++++       +.+++|+.|.+ .+.++++.++++.
T Consensus         1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-------~~~i~i~~~~~~~~~~~~~~~~~~~   73 (123)
T cd03011           1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-------YPVVSVALRSGDDGAVARFMQKKGY   73 (123)
T ss_pred             CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-------CCEEEEEccCCCHHHHHHHHHHcCC
Confidence            788 99999999999999999999999999999999999999999876       45788887764 7888899988763


Q ss_pred             ceecc-CChHHHHHHHhhcCCCCCceEEEEcCCCCCCCccc
Q 014225          121 LAVPY-SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATL  160 (428)
Q Consensus       121 ~~~~~-~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~  160 (428)
                       .+++ .+.+  ..+.+.|++.++|+++||++   +| ++.
T Consensus        74 -~~~~~~d~~--~~~~~~~~i~~~P~~~vid~---~g-i~~  107 (123)
T cd03011          74 -GFPVINDPD--GVISARWGVSVTPAIVIVDP---GG-IVF  107 (123)
T ss_pred             -CccEEECCC--cHHHHhCCCCcccEEEEEcC---CC-eEE
Confidence             2332 1332  68999999999999999998   88 554

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.63  E-value=1.6e-15  Score=130.99  Aligned_cols=114  Identities=20%  Similarity=0.341  Sum_probs=91.6

Q ss_pred             cccCc-cccCCCCEEecccCC-CC-EEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhc
Q 014225           41 KDRDY-LLNQHGTQVKVSDLE-GK-VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRAC  117 (428)
Q Consensus        41 ~~pdf-l~~~~G~~v~l~~~~-gk-~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~  117 (428)
                      .+|+| |.+.+|++++++++. +| +|+++||++||++|+.++|.|+++++++++.+  +.+++|+.|.... ..++.+.
T Consensus         1 ~~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~--v~vv~V~~~~~~~-~~~~~~~   77 (149)
T cd02970           1 TAPDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALG--VELVAVGPESPEK-LEAFDKG   77 (149)
T ss_pred             CCCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcC--eEEEEEeCCCHHH-HHHHHHh
Confidence            37899 999999999999875 45 55666679999999999999999999999877  9999999886644 4577776


Q ss_pred             CCCceeccCChHHHHHHHhhcCCC-----------------------------CCceEEEEcCCCCCCCccccc
Q 014225          118 MPWLAVPYSDLETKKALNRKFDIE-----------------------------GIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       118 ~~~~~~~~~d~~~~~~l~~~~~v~-----------------------------~~P~~~lid~~~~dG~i~~~~  162 (428)
                      .++....+.|.+  ..+.+.|++.                             .+|+++|||+   +|+|+..+
T Consensus        78 ~~~~~p~~~D~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~---~g~i~~~~  146 (149)
T cd02970          78 KFLPFPVYADPD--RKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGP---DGTILFAH  146 (149)
T ss_pred             cCCCCeEEECCc--hhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECC---CCeEEEEe
Confidence            664322233544  7899999984                             7999999999   99887653

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=3e-15  Score=127.91  Aligned_cols=118  Identities=23%  Similarity=0.302  Sum_probs=103.3

Q ss_pred             cccccccCc-cccCCCCEEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHH
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNY  114 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~  114 (428)
                      .+|+.+||| |.+.+|++++|++++||.|||+|| ..++|.|..++-.+++.+.+|++.|  .+|++||.|... +.++|
T Consensus         5 ~~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~--a~V~GIS~Ds~~-~~~~F   81 (157)
T COG1225           5 KVGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLG--AVVLGISPDSPK-SHKKF   81 (157)
T ss_pred             CCCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCC--CEEEEEeCCCHH-HHHHH
Confidence            369999999 999999999999999999999999 8999999999999999999999987  999999998765 48899


Q ss_pred             HhcCCCceeccCChHHHHHHHhhcCCC------------CCceEEEEcCCCCCCCccccc
Q 014225          115 RACMPWLAVPYSDLETKKALNRKFDIE------------GIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       115 ~~~~~~~~~~~~d~~~~~~l~~~~~v~------------~~P~~~lid~~~~dG~i~~~~  162 (428)
                      .++++..+...+|.+  ..++++||+-            ..++++|||+   +|+|++..
T Consensus        82 ~~k~~L~f~LLSD~~--~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~---dG~I~~~~  136 (157)
T COG1225          82 AEKHGLTFPLLSDED--GEVAEAYGVWGEKKMYGKEYMGIERSTFVIDP---DGKIRYVW  136 (157)
T ss_pred             HHHhCCCceeeECCc--HHHHHHhCcccccccCccccccccceEEEECC---CCeEEEEe
Confidence            999886544455665  7899999972            4689999999   99987653

>PRK13599 putative peroxiredoxin; Provisional

Probab=99.60  E-value=2.4e-15  Score=137.62  Aligned_cols=119  Identities=13%  Similarity=0.130  Sum_probs=97.6

Q ss_pred             cccccccCc-cccCCCCEEecccCCCCE-EEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCC--hHHHH
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSDLEGKV-TALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED--LNAFN  112 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk~-vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~--~~~~~  112 (428)
                      .+|+.+||| +.+.+|+.+.+++++||. ||++||++|||+|..+++.|++++++|+++|  +++++||+|..  ...|.
T Consensus         3 ~~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~g--v~vigIS~D~~~~~~~w~   80 (215)
T PRK13599          3 LLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELN--TELIGLSVDQVFSHIKWV   80 (215)
T ss_pred             CCCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHH
Confidence            689999999 999999988889999996 5789999999999999999999999999988  99999999975  34566


Q ss_pred             HHHhcC---CCceeccCChHHHHHHHhhcCCC-------CCceEEEEcCCCCCCCccccc
Q 014225          113 NYRACM---PWLAVPYSDLETKKALNRKFDIE-------GIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       113 ~~~~~~---~~~~~~~~d~~~~~~l~~~~~v~-------~~P~~~lid~~~~dG~i~~~~  162 (428)
                      +++++.   +..+..++|.+  ..+++.||+.       ..|+++|||+   +|+|+...
T Consensus        81 ~~i~~~~~~~i~fPil~D~~--~~va~~yg~~~~~~~~~~~R~tfIID~---dG~Ir~~~  135 (215)
T PRK13599         81 EWIKDNTNIAIPFPVIADDL--GKVSNQLGMIHPGKGTNTVRAVFIVDD---KGTIRLIM  135 (215)
T ss_pred             HhHHHhcCCCCceeEEECCC--chHHHHcCCCccCCCCceeeEEEEECC---CCEEEEEE
Confidence            666642   32222233443  7899999973       6899999999   99998663

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=99.60  E-value=3.8e-15  Score=132.48  Aligned_cols=82  Identities=12%  Similarity=0.107  Sum_probs=71.5

Q ss_pred             CCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC------
Q 014225          205 HDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD------  277 (428)
Q Consensus       205 ~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d------  277 (428)
                      ..++|++ +.+|+ .+++++++||+|||.|||+||++|. .++.|++++++|+++         ++.|++|+++      
T Consensus         4 ~~~~f~~~~~~G~-~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~---------gl~Vlg~p~nqf~~qe   72 (183)
T PRK10606          4 SILTTVVTTIDGE-VTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQ---------GFVVLGFPCNQFLGQE   72 (183)
T ss_pred             CccCcEeECCCCC-EEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhC---------CeEEEEeeccccccCC
Confidence            4678999 99999 9999999999999999999999996 689999999999877         8999999986      


Q ss_pred             -CCHHHHHHHHh-cCCccccccC
Q 014225          278 -RDQTSFESYFG-TMPWLALPFG  298 (428)
Q Consensus       278 -~~~~~~~~~~~-~~~~~~~~~~  298 (428)
                       .+.+++++|++ +++ ++||+.
T Consensus        73 ~~~~~ei~~f~~~~~g-~~Fpv~   94 (183)
T PRK10606         73 PGSDEEIKTYCRTTWG-VTFPMF   94 (183)
T ss_pred             CCCHHHHHHHHHHccC-CCceeE
Confidence             35678889987 444 677775

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.60  E-value=1.1e-14  Score=125.00  Aligned_cols=98  Identities=21%  Similarity=0.379  Sum_probs=78.7

Q ss_pred             cCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchh
Q 014225          224 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK  303 (428)
Q Consensus       224 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~  303 (428)
                      ..||+++|+||++||++|+.+.|.|.+++++|.+.          +.|+.|++|.+.                     ..
T Consensus        18 ~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~----------~~~v~v~vd~~~---------------------~~   66 (142)
T cd02950          18 SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ----------VNFVMLNVDNPK---------------------WL   66 (142)
T ss_pred             hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC----------eeEEEEEcCCcc---------------------cH
Confidence            46899999999999999999999999999988644          789999888542                     14


Q ss_pred             HHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhcCCC
Q 014225          304 ELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPR  366 (428)
Q Consensus       304 ~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~~~  366 (428)
                      .+++.|+|.++|++++||++|+++.+..+.           ..   .++|.+.|++++++.+.
T Consensus        67 ~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~-----------~~---~~~l~~~l~~l~~~~~~  115 (142)
T cd02950          67 PEIDRYRVDGIPHFVFLDREGNEEGQSIGL-----------QP---KQVLAQNLDALVAGEPL  115 (142)
T ss_pred             HHHHHcCCCCCCEEEEECCCCCEEEEEeCC-----------CC---HHHHHHHHHHHHcCCCC
Confidence            678899999999999999999999875431           12   25677778887776543

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=99.60  E-value=4.7e-15  Score=130.34  Aligned_cols=101  Identities=21%  Similarity=0.277  Sum_probs=77.5

Q ss_pred             cccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhc
Q 014225           39 ASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRAC  117 (428)
Q Consensus        39 g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~  117 (428)
                      ....++| |  .+|+++++++++    +|+||++||++|++++|.|+++++++   +  +++++|++|...+        
T Consensus        52 ~~~~~~f~l--~dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~---g--~~Vi~Vs~D~~~~--------  112 (181)
T PRK13728         52 KPAPRWFRL--SNGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY---G--FSVFPYTLDGQGD--------  112 (181)
T ss_pred             CCCCCccCC--CCCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc---C--CEEEEEEeCCCCC--------
Confidence            4556777 5  499999999997    77899999999999999999999997   4  8999999986642        


Q ss_pred             CCCceeccCChHHHHHHHhhcCC--CCCceEEEEcCCCCCCCcccccch
Q 014225          118 MPWLAVPYSDLETKKALNRKFDI--EGIPCLVVLQPYDDKDDATLHDGV  164 (428)
Q Consensus       118 ~~~~~~~~~d~~~~~~l~~~~~v--~~~P~~~lid~~~~dG~i~~~~~~  164 (428)
                      .   .+|..-.+....+.+.|++  .++|++||||+   +|+++.....
T Consensus       113 ~---~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~---~G~i~~~~~~  155 (181)
T PRK13728        113 T---AFPEALPAPPDVMQTFFPNIPVATPTTFLVNV---NTLEALPLLQ  155 (181)
T ss_pred             C---CCceEecCchhHHHHHhCCCCCCCCeEEEEeC---CCcEEEEEEE
Confidence            1   2222111111567788985  69999999999   9988654333

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.60  E-value=2.9e-15  Score=166.08  Aligned_cols=118  Identities=23%  Similarity=0.231  Sum_probs=97.9

Q ss_pred             cccccccCc-ccc--CCCCEEec-ccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEec---CC--C
Q 014225           37 LLASKDRDY-LLN--QHGTQVKV-SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS---DE--D  107 (428)
Q Consensus        37 ~~g~~~pdf-l~~--~~G~~v~l-~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~---D~--~  107 (428)
                      ..|..+|+| ..+  .+|+++++ ++++||+|+|+|||+||++|+.++|.|++++++|++++  +.+++|+.   |.  +
T Consensus       392 ~~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~--~~vvgV~~~~~D~~~~  469 (1057)
T PLN02919        392 KTATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQP--FTVVGVHSAKFDNEKD  469 (1057)
T ss_pred             ccCCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCC--eEEEEEeccccccccc
Confidence            358899999 544  78999998 68999999999999999999999999999999998876  99999974   32  4


Q ss_pred             hHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          108 LNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      .+.++++++++++......|.+  ..+++.|++.++|+++|||+   +|+++.+
T Consensus       470 ~~~~~~~~~~~~i~~pvv~D~~--~~~~~~~~V~~iPt~ilid~---~G~iv~~  518 (1057)
T PLN02919        470 LEAIRNAVLRYNISHPVVNDGD--MYLWRELGVSSWPTFAVVSP---NGKLIAQ  518 (1057)
T ss_pred             HHHHHHHHHHhCCCccEEECCc--hHHHHhcCCCccceEEEECC---CCeEEEE
Confidence            5778888887764322222433  68899999999999999999   9999876

>PRK13190 putative peroxiredoxin; Provisional

Probab=99.59  E-value=4e-15  Score=135.37  Aligned_cols=117  Identities=21%  Similarity=0.396  Sum_probs=93.6

Q ss_pred             cccccccCc-cccCCCCEEecccCCCCEEEE-EEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChH--HH-
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSDLEGKVTAL-YFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLN--AF-  111 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv-~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~--~~-  111 (428)
                      .+|+.+|+| +.+..| .+++++++||.++| +||++||++|..+++.|++++++|+++|  +++++||.|....  .| 
T Consensus         3 ~vG~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~--~~vi~vS~D~~~~~~~w~   79 (202)
T PRK13190          3 KLGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLG--VELVGLSVDSIYSHIAWL   79 (202)
T ss_pred             CCCCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHH
Confidence            368999999 888888 69999999996655 6899999999999999999999999887  9999999987542  33 


Q ss_pred             HHHHhcCCC-ceec-cCChHHHHHHHhhcCCC------CCceEEEEcCCCCCCCcccc
Q 014225          112 NNYRACMPW-LAVP-YSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       112 ~~~~~~~~~-~~~~-~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~dG~i~~~  161 (428)
                      +++.++.+. ..+| ++|.+  ..+++.||+.      .+|+++|||+   +|+|+..
T Consensus        80 ~~~~~~~g~~~~fPll~D~~--~~ia~~ygv~~~~~g~~~p~~fiId~---~G~I~~~  132 (202)
T PRK13190         80 RDIEERFGIKIPFPVIADID--KELAREYNLIDENSGATVRGVFIIDP---NQIVRWM  132 (202)
T ss_pred             HhHHHhcCCCceEEEEECCC--hHHHHHcCCccccCCcEEeEEEEECC---CCEEEEE
Confidence            334444442 2333 33444  7999999984      5899999999   9988765

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=99.58  E-value=7.5e-15  Score=131.36  Aligned_cols=120  Identities=27%  Similarity=0.370  Sum_probs=93.6

Q ss_pred             ccccccccCc-cc---cCCCCEEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHH
Q 014225           36 SLLASKDRDY-LL---NQHGTQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA  110 (428)
Q Consensus        36 ~~~g~~~pdf-l~---~~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~  110 (428)
                      ..+|.++|+| +.   +.+..+++|++++||+++|+|| ++||++|..+++.|++++++|++.|  +++++||.|.... 
T Consensus         2 ~~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g--~~vigIS~D~~~~-   78 (187)
T PRK10382          2 SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLG--VDVYSVSTDTHFT-   78 (187)
T ss_pred             CccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCC--CEEEEEeCCCHHH-
Confidence            3579999999 43   3445578889999999999999 9999999999999999999999887  9999999987643 


Q ss_pred             HHHHHhcC----CCceeccCChHHHHHHHhhcCC----CCC--ceEEEEcCCCCCCCcccccc
Q 014225          111 FNNYRACM----PWLAVPYSDLETKKALNRKFDI----EGI--PCLVVLQPYDDKDDATLHDG  163 (428)
Q Consensus       111 ~~~~~~~~----~~~~~~~~d~~~~~~l~~~~~v----~~~--P~~~lid~~~~dG~i~~~~~  163 (428)
                      .++|.+..    +..+...+|.+  ..+++.||+    .++  |+++|||+   +|+|++...
T Consensus        79 ~~a~~~~~~~~~~l~fpllsD~~--~~ia~~ygv~~~~~g~~~r~tfIID~---~G~I~~~~~  136 (187)
T PRK10382         79 HKAWHSSSETIAKIKYAMIGDPT--GALTRNFDNMREDEGLADRATFVVDP---QGIIQAIEV  136 (187)
T ss_pred             HHHHHHhhccccCCceeEEEcCc--hHHHHHcCCCcccCCceeeEEEEECC---CCEEEEEEE
Confidence            44554331    22111223443  899999998    356  99999999   999987743

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=6.4e-14  Score=139.74  Aligned_cols=78  Identities=21%  Similarity=0.343  Sum_probs=56.7

Q ss_pred             CCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCCh
Q 014225           49 QHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDL  128 (428)
Q Consensus        49 ~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~  128 (428)
                      ++.+.+.-.-.....++|.|||+||++|++..|++.+.++.+++.++.+.+.-|  |.+.+                   
T Consensus        30 Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakV--Dat~~-------------------   88 (493)
T KOG0190|consen   30 LTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKV--DATEE-------------------   88 (493)
T ss_pred             EecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEe--ecchh-------------------
Confidence            334334443344578999999999999999999999999999998766666654  44433                   


Q ss_pred             HHHHHHHhhcCCCCCceEEEEc
Q 014225          129 ETKKALNRKFDIEGIPCLVVLQ  150 (428)
Q Consensus       129 ~~~~~l~~~~~v~~~P~~~lid  150 (428)
                         ..++..|+|.++||+.++.
T Consensus        89 ---~~~~~~y~v~gyPTlkiFr  107 (493)
T KOG0190|consen   89 ---SDLASKYEVRGYPTLKIFR  107 (493)
T ss_pred             ---hhhHhhhcCCCCCeEEEEe
Confidence               5666666666666666666

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.55  E-value=3.4e-14  Score=115.10  Aligned_cols=77  Identities=18%  Similarity=0.375  Sum_probs=64.8

Q ss_pred             ccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcch
Q 014225          223 SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI  302 (428)
Q Consensus       223 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~  302 (428)
                      +.+|++|+|+|||+||++|+.+.|.|.++++++ .          ++.++.|++|.+.+                    .
T Consensus        12 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~----------~v~~~~vd~d~~~~--------------------~   60 (103)
T cd02985          12 KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-N----------DVVFLLVNGDENDS--------------------T   60 (103)
T ss_pred             HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-C----------CCEEEEEECCCChH--------------------H
Confidence            346899999999999999999999999999988 2          47888898886521                    2


Q ss_pred             hHHHHhcCcCccceEEEECCCCcEEeccc
Q 014225          303 KELTKYFDVQGIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       303 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~  331 (428)
                      .++++.|+|.++||++++ ++|+++.+..
T Consensus        61 ~~l~~~~~V~~~Pt~~~~-~~G~~v~~~~   88 (103)
T cd02985          61 MELCRREKIIEVPHFLFY-KDGEKIHEEE   88 (103)
T ss_pred             HHHHHHcCCCcCCEEEEE-eCCeEEEEEe
Confidence            478899999999998888 9999987743

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=99.55  E-value=2.3e-14  Score=133.87  Aligned_cols=121  Identities=17%  Similarity=0.187  Sum_probs=93.2

Q ss_pred             ccccccccCc-ccc-CCCC--EEecccC-CCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCC--
Q 014225           36 SLLASKDRDY-LLN-QHGT--QVKVSDL-EGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED--  107 (428)
Q Consensus        36 ~~~g~~~pdf-l~~-~~G~--~v~l~~~-~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~--  107 (428)
                      .++|+.+||| +.+ .+|+  +++++++ +||.++|+|| ++||++|..+++.|++++++|++.|  ++|++||.|..  
T Consensus        68 ~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g--v~VigIS~Ds~~~  145 (261)
T PTZ00137         68 SLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERG--VKVLGVSVDSPFS  145 (261)
T ss_pred             ccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHH
Confidence            4689999999 876 4554  6899998 8988777777 9999999999999999999999988  99999999873  


Q ss_pred             hHHHHHH-HhcCCC--ceec-cCChHHHHHHHhhcCCC-----CCceEEEEcCCCCCCCcccccc
Q 014225          108 LNAFNNY-RACMPW--LAVP-YSDLETKKALNRKFDIE-----GIPCLVVLQPYDDKDDATLHDG  163 (428)
Q Consensus       108 ~~~~~~~-~~~~~~--~~~~-~~d~~~~~~l~~~~~v~-----~~P~~~lid~~~~dG~i~~~~~  163 (428)
                      ...|.+. .++.+.  +.+| ++|.+  ..+++.||+.     ..|+++|||+   +|+|++...
T Consensus       146 h~aw~~~~~~~~g~~~l~fPlLsD~~--~~iakayGv~~~~g~a~R~tFIID~---dG~I~~~~~  205 (261)
T PTZ00137        146 HKAWKELDVRQGGVSPLKFPLFSDIS--REVSKSFGLLRDEGFSHRASVLVDK---AGVVKHVAV  205 (261)
T ss_pred             HHHHHhhhhhhccccCcceEEEEcCC--hHHHHHcCCCCcCCceecEEEEECC---CCEEEEEEE
Confidence            2334332 222111  2222 33443  7899999985     5899999999   999987643

>PRK15000 peroxidase; Provisional

Probab=99.54  E-value=1.5e-14  Score=131.21  Aligned_cols=120  Identities=21%  Similarity=0.292  Sum_probs=91.8

Q ss_pred             ccccccccCc-cccC--CCCE---EecccC-CCCEEEEEEecC-CChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCC
Q 014225           36 SLLASKDRDY-LLNQ--HGTQ---VKVSDL-EGKVTALYFSAN-WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED  107 (428)
Q Consensus        36 ~~~g~~~pdf-l~~~--~G~~---v~l~~~-~gk~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~  107 (428)
                      +++|..+||| +.+.  +|+.   ++++++ +||+++|+||+. ||+.|..+++.|++++++|+++|  ++|++||.|..
T Consensus         2 ~~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g--~~vigvS~D~~   79 (200)
T PRK15000          2 VLVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRG--VEVVGVSFDSE   79 (200)
T ss_pred             CcCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCH
Confidence            3579999999 8875  3453   455555 899999999985 99999999999999999999887  99999999965


Q ss_pred             h--HHHHH-HHhcCCC--ceec-cCChHHHHHHHhhcCCC------CCceEEEEcCCCCCCCccccc
Q 014225          108 L--NAFNN-YRACMPW--LAVP-YSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       108 ~--~~~~~-~~~~~~~--~~~~-~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~dG~i~~~~  162 (428)
                      .  ..|.+ +.++.+.  +.+| ++|.+  ..+++.||+.      .+|+++|||+   +|+|+...
T Consensus        80 ~~~~~w~~~~~~~~g~~~i~fpllsD~~--~~ia~~ygv~~~~~g~~~r~tfiID~---~G~I~~~~  141 (200)
T PRK15000         80 FVHNAWRNTPVDKGGIGPVKYAMVADVK--REIQKAYGIEHPDEGVALRGSFLIDA---NGIVRHQV  141 (200)
T ss_pred             HHHHHHHhhHHHhCCccccCceEEECCC--cHHHHHcCCccCCCCcEEeEEEEECC---CCEEEEEE
Confidence            3  33333 2333321  1233 23443  7899999987      7999999999   99998753

>PRK13191 putative peroxiredoxin; Provisional

Probab=99.54  E-value=2.2e-14  Score=131.46  Aligned_cols=118  Identities=15%  Similarity=0.268  Sum_probs=93.1

Q ss_pred             cccccccCc-cccCCCCEEec-ccCCCCEEE-EEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChH--HH
Q 014225           37 LLASKDRDY-LLNQHGTQVKV-SDLEGKVTA-LYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLN--AF  111 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l-~~~~gk~vl-v~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~--~~  111 (428)
                      .+|+.+||| +.+.+|+ +.+ ++++||.++ ++||++||+.|..+++.|++++++|+++|  +++++||+|....  .|
T Consensus         8 ~iG~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g--~~VigvS~Ds~~~h~aw   84 (215)
T PRK13191          8 LIGEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLN--TELIGLSVDSNISHIEW   84 (215)
T ss_pred             cCCCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHH
Confidence            579999999 9999997 555 558999655 58899999999999999999999999987  9999999997654  45


Q ss_pred             HHHHhc---CCCceeccCChHHHHHHHhhcCCC-------CCceEEEEcCCCCCCCccccc
Q 014225          112 NNYRAC---MPWLAVPYSDLETKKALNRKFDIE-------GIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       112 ~~~~~~---~~~~~~~~~d~~~~~~l~~~~~v~-------~~P~~~lid~~~~dG~i~~~~  162 (428)
                      .+++++   .+..+..++|.+  ..+++.||+.       ..|+++|||+   +|+|....
T Consensus        85 ~~~~~~~~~~~i~fPllsD~~--~~ia~~ygv~~~~~~~~~~r~tfIID~---~G~Ir~~~  140 (215)
T PRK13191         85 VMWIEKNLKVEVPFPIIADPM--GNVAKRLGMIHAESSTATVRAVFIVDD---KGTVRLIL  140 (215)
T ss_pred             HhhHHHhcCCCCceEEEECCc--hHHHHHcCCcccccCCceeEEEEEECC---CCEEEEEE
Confidence            555553   222222233444  7999999973       4799999999   99998764

>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=5.6e-14  Score=122.63  Aligned_cols=142  Identities=18%  Similarity=0.282  Sum_probs=113.2

Q ss_pred             hhhccCCCCccc-CC-CCC--ceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEE
Q 014225          200 NLLTNHDRGYLL-GH-PPD--EKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV  274 (428)
Q Consensus       200 ~~~g~~~p~f~l-~~-~g~--~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~i  274 (428)
                      .++|+++|+|+. .. .|.  .+++++++.||+++|+|| +...+.|..++..+.+++.+|+.+         +++|++|
T Consensus         3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~---------g~eVigv   73 (194)
T COG0450           3 SLIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKR---------GVEVIGV   73 (194)
T ss_pred             cccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHc---------CCEEEEE
Confidence            467999999999 44 452  279999999999999999 578999999999999999999988         9999999


Q ss_pred             EcCC--CHHHHHHHHhcCCc---cccccCCcchhHHHHhcCcC------ccceEEEECCCCcEEeccccchhhcccccCC
Q 014225          275 STDR--DQTSFESYFGTMPW---LALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQGRNLINLYQENAY  343 (428)
Q Consensus       275 s~d~--~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~  343 (428)
                      |+|.  +..+|.+...+...   ++||+..|.+.++++.||+-      ....+||||++|+|+.....++  .      
T Consensus        74 S~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~--~------  145 (194)
T COG0450          74 STDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHILVNPL--T------  145 (194)
T ss_pred             ecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEEEEecC--C------
Confidence            9996  35577777665554   78999999999999999984      4668999999999988743222  1      


Q ss_pred             CCChHHHHHHHHHHHHH
Q 014225          344 PFTEAKLEFLEKQMEEE  360 (428)
Q Consensus       344 p~~~~~~~~L~~~l~~~  360 (428)
                        ..+.++++...|+.+
T Consensus       146 --iGRn~dEilR~idAl  160 (194)
T COG0450         146 --IGRNVDEILRVIDAL  160 (194)
T ss_pred             --CCcCHHHHHHHHHHH
Confidence              133456666666543

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=99.53  E-value=4.6e-14  Score=128.58  Aligned_cols=117  Identities=15%  Similarity=0.254  Sum_probs=89.4

Q ss_pred             ccccccCc-cccCCCCEEecccCCC-C-EEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChH--HHH
Q 014225           38 LASKDRDY-LLNQHGTQVKVSDLEG-K-VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLN--AFN  112 (428)
Q Consensus        38 ~g~~~pdf-l~~~~G~~v~l~~~~g-k-~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~--~~~  112 (428)
                      +|+.+|+| +.+.+| .+++++++| | ++|++||++||+.|..+++.|++++++|++.|  +++++||+|....  .|.
T Consensus         1 vG~~aP~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~g--v~vigvS~D~~~~~~~~~   77 (203)
T cd03016           1 LGDTAPNFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRN--VKLIGLSVDSVESHIKWI   77 (203)
T ss_pred             CcCCCCCeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEECCCHHHHHHHH
Confidence            48899999 988888 599999988 6 45668999999999999999999999999987  9999999996532  222


Q ss_pred             HHHhc---CCCceeccCChHHHHHHHhhcCCC----C----CceEEEEcCCCCCCCccccc
Q 014225          113 NYRAC---MPWLAVPYSDLETKKALNRKFDIE----G----IPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       113 ~~~~~---~~~~~~~~~d~~~~~~l~~~~~v~----~----~P~~~lid~~~~dG~i~~~~  162 (428)
                      +.++.   .++.+..++|.+  ..+++.||+.    +    .|+++|||+   +|+|+...
T Consensus        78 ~~i~~~~~~~~~fpil~D~~--~~ia~~yg~~~~~~~~~~~~r~~fiID~---~G~I~~~~  133 (203)
T cd03016          78 EDIEEYTGVEIPFPIIADPD--REVAKLLGMIDPDAGSTLTVRAVFIIDP---DKKIRLIL  133 (203)
T ss_pred             hhHHHhcCCCCceeEEECch--HHHHHHcCCccccCCCCceeeEEEEECC---CCeEEEEE
Confidence            22222   232222233444  7999999975    2    457999999   99988663

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=99.53  E-value=4.1e-14  Score=123.26  Aligned_cols=118  Identities=19%  Similarity=0.225  Sum_probs=100.8

Q ss_pred             hccCCCCccc-CCC---CCceecccc-cCCcEEEEEEe-ccCChhHHhh-hHHHHHHHHHHHhhhhhcCCCCCCE-EEEE
Q 014225          202 LTNHDRGYLL-GHP---PDEKVPVSS-LVGKTVGLYFS-ARWCIPCEKF-MPKLLSIYQKIKQNLVEKGDALEDF-EVVF  273 (428)
Q Consensus       202 ~g~~~p~f~l-~~~---g~~~v~l~~-~~gk~vll~F~-a~wC~~C~~~-~~~l~~l~~~~~~~~~~~~~~~~~~-~iv~  273 (428)
                      +|..+|+|++ +.+   |. .+++++ ++||+++|+|| +.|||.|..+ ++.|++.+++|.+.         ++ .|++
T Consensus         1 vG~~aPdF~l~~~~~~~g~-~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~---------g~~~V~~   70 (155)
T cd03013           1 VGDKLPNVTLFEYVPGPPN-PVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAK---------GVDEVIC   70 (155)
T ss_pred             CCCcCCCeEeeeeccCCCc-eeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHC---------CCCEEEE
Confidence            4789999999 775   88 999999 68987777777 6899999999 99999999999877         78 6999


Q ss_pred             EEcCCCHHHHHHHHhcCCc-cccccCCcchhHHHHhcCcC-----------ccceEEEECCCCcEEeccc
Q 014225          274 VSTDRDQTSFESYFGTMPW-LALPFGDPTIKELTKYFDVQ-----------GIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       274 is~d~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~~  331 (428)
                      ||.| +....++|..+.+. .+||++.|.+.++++.||+.           ..+.+|||| +|+|++...
T Consensus        71 iS~D-~~~~~~~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~~  138 (155)
T cd03013          71 VSVN-DPFVMKAWGKALGAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLFV  138 (155)
T ss_pred             EECC-CHHHHHHHHHhhCCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEEE
Confidence            9999 56678888888775 48999999999999999982           146789999 799998753

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=99.52  E-value=2.9e-14  Score=126.16  Aligned_cols=101  Identities=14%  Similarity=0.210  Sum_probs=77.9

Q ss_pred             CCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEE------EEEecCCChHHHHHHHh----c--
Q 014225           50 HGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEV------VFVSSDEDLNAFNNYRA----C--  117 (428)
Q Consensus        50 ~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~i------i~vs~D~~~~~~~~~~~----~--  117 (428)
                      +.++++.++++||+++|+|||+||++|+.++|.|.++    ++.|  +.+      ++||.|+.......|++    +  
T Consensus        48 ~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~~~--~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~  121 (184)
T TIGR01626        48 VYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAI----KAAK--FPPVKYQTTTIINADDAIVGTGMFVKSSAKKGK  121 (184)
T ss_pred             cceeccHHHcCCCEEEEEEEecCCChhhccchHHHHH----HHcC--CCcccccceEEEECccchhhHHHHHHHHHHHhc
Confidence            4446777899999999999999999999999999988    3344  778      99999886544444444    3  


Q ss_pred             --CCCceeccCChHHHHHHHhhcCCCCCceE-EEEcCCCCCCCccccc
Q 014225          118 --MPWLAVPYSDLETKKALNRKFDIEGIPCL-VVLQPYDDKDDATLHD  162 (428)
Q Consensus       118 --~~~~~~~~~d~~~~~~l~~~~~v~~~P~~-~lid~~~~dG~i~~~~  162 (428)
                        ++|..+.. |.+  ..+...|++.++|++ ++||+   +|+++...
T Consensus       122 ~~~P~~~vll-D~~--g~v~~~~gv~~~P~T~fVIDk---~GkVv~~~  163 (184)
T TIGR01626       122 KENPWSQVVL-DDK--GAVKNAWQLNSEDSAIIVLDK---TGKVKFVK  163 (184)
T ss_pred             ccCCcceEEE-CCc--chHHHhcCCCCCCceEEEECC---CCcEEEEE
Confidence              33432323 443  678889999999988 89999   99998763

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.51  E-value=1e-13  Score=112.84  Aligned_cols=73  Identities=16%  Similarity=0.260  Sum_probs=65.3

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++|||+|||+||++|+.+.|.|.++.+++.+.          +.++.|++|..                       .+
T Consensus        13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~----------v~f~kVDvD~~-----------------------~~   59 (114)
T cd02954          13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF----------AVIYLVDIDEV-----------------------PD   59 (114)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc----------eEEEEEECCCC-----------------------HH
Confidence            4678999999999999999999999999998754          68888888865                       68


Q ss_pred             HHHhcCcCccceEEEECCCCcEEeccc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~~  331 (428)
                      ++..|+|.++||++++ ++|+.+.+..
T Consensus        60 la~~~~V~~iPTf~~f-k~G~~v~~~~   85 (114)
T cd02954          60 FNKMYELYDPPTVMFF-FRNKHMKIDL   85 (114)
T ss_pred             HHHHcCCCCCCEEEEE-ECCEEEEEEc
Confidence            9999999999999999 8999998863

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=99.51  E-value=7.5e-14  Score=120.65  Aligned_cols=86  Identities=17%  Similarity=0.271  Sum_probs=62.3

Q ss_pred             CCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccc
Q 014225          215 PDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLA  294 (428)
Q Consensus       215 g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~  294 (428)
                      |+ .+.++    +..+|+|||+||++|++++|.|+++++++            ++.|++|++|....           ..
T Consensus        44 G~-~~~l~----~~~lvnFWAsWCppCr~e~P~L~~l~~~~------------~~~Vi~Vs~d~~~~-----------~~   95 (153)
T TIGR02738        44 GR-HANQD----DYALVFFYQSTCPYCHQFAPVLKRFSQQF------------GLPVYAFSLDGQGL-----------TG   95 (153)
T ss_pred             ch-hhhcC----CCEEEEEECCCChhHHHHHHHHHHHHHHc------------CCcEEEEEeCCCcc-----------cc
Confidence            44 45544    44599999999999999999999999876            36799999986431           12


Q ss_pred             cccCCcchhHH-HHhc---CcCccceEEEECCCCcEEe
Q 014225          295 LPFGDPTIKEL-TKYF---DVQGIPCLVIIGPEGKTVT  328 (428)
Q Consensus       295 ~~~~~d~~~~~-~~~~---~v~~~P~~~lid~~G~i~~  328 (428)
                      ||...+..... ...|   ++.++|++||||++|+++.
T Consensus        96 fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G~~i~  133 (153)
T TIGR02738        96 FPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNTRKAY  133 (153)
T ss_pred             cccccCCchHHHHHHhccCCCCCCCeEEEEeCCCCEEE
Confidence            33333222333 3455   8899999999999988644

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=7.3e-14  Score=117.13  Aligned_cols=72  Identities=25%  Similarity=0.532  Sum_probs=65.7

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      +++|+|+|||+||+||+.+.|.|+++..+|.++          +.+..|++|..                       .++
T Consensus        61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~----------~k~~kvdtD~~-----------------------~el  107 (150)
T KOG0910|consen   61 DVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK----------FKLYKVDTDEH-----------------------PEL  107 (150)
T ss_pred             CCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe----------EEEEEEccccc-----------------------cch
Confidence            578999999999999999999999999999765          89999999966                       689


Q ss_pred             HHhcCcCccceEEEECCCCcEEeccc
Q 014225          306 TKYFDVQGIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       306 ~~~~~v~~~P~~~lid~~G~i~~~~~  331 (428)
                      +..|+|.++||+++| ++|..+.+..
T Consensus       108 a~~Y~I~avPtvlvf-knGe~~d~~v  132 (150)
T KOG0910|consen  108 AEDYEISAVPTVLVF-KNGEKVDRFV  132 (150)
T ss_pred             HhhcceeeeeEEEEE-ECCEEeeeec
Confidence            999999999999999 9999887643

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.50  E-value=1.5e-13  Score=111.16  Aligned_cols=72  Identities=14%  Similarity=0.262  Sum_probs=62.0

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .|++++|+|||+||++|+.+.|.|.++++++++.         .+.++.+++| +                       .+
T Consensus        16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~---------~~~~~~vd~d-~-----------------------~~   62 (102)
T cd02948          16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDD---------LLHFATAEAD-T-----------------------ID   62 (102)
T ss_pred             cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCC---------cEEEEEEeCC-C-----------------------HH
Confidence            4789999999999999999999999999988643         4778888877 4                       45


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      +++.|+|+++||++++ ++|+++.+.
T Consensus        63 ~~~~~~v~~~Pt~~~~-~~g~~~~~~   87 (102)
T cd02948          63 TLKRYRGKCEPTFLFY-KNGELVAVI   87 (102)
T ss_pred             HHHHcCCCcCcEEEEE-ECCEEEEEE
Confidence            7899999999999888 799988774

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>PRK13189 peroxiredoxin; Provisional

Probab=99.48  E-value=1.5e-13  Score=126.59  Aligned_cols=118  Identities=19%  Similarity=0.343  Sum_probs=90.6

Q ss_pred             cccccccCc-cccCCCCEEeccc-CCCC-EEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChH--HH
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSD-LEGK-VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLN--AF  111 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~-~~gk-~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~--~~  111 (428)
                      .+|+.+|+| +.+.+|+ +++++ ++|| ++|++||++||+.|..+++.|++++++|+++|  ++|++||+|....  +|
T Consensus        10 ~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~--v~VigvS~D~~~~h~aw   86 (222)
T PRK13189         10 LIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELN--TELIGLSIDQVFSHIKW   86 (222)
T ss_pred             cCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcC--CEEEEEECCCHHHHHHH
Confidence            479999999 9988885 77776 4999 55668899999999999999999999999887  9999999997543  23


Q ss_pred             HHHH-hcCCC-ceec-cCChHHHHHHHhhcCCC-------CCceEEEEcCCCCCCCccccc
Q 014225          112 NNYR-ACMPW-LAVP-YSDLETKKALNRKFDIE-------GIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       112 ~~~~-~~~~~-~~~~-~~d~~~~~~l~~~~~v~-------~~P~~~lid~~~~dG~i~~~~  162 (428)
                      .+.+ +..+. ..+| ++|.+  ..+++.||+.       .+|+++|||+   +|+|+...
T Consensus        87 ~~~~~~~~g~~i~fPllsD~~--~~ia~~ygv~~~~~~~~~~r~tfIID~---~G~Ir~~~  142 (222)
T PRK13189         87 VEWIKEKLGVEIEFPIIADDR--GEIAKKLGMISPGKGTNTVRAVFIIDP---KGIIRAIL  142 (222)
T ss_pred             HHhHHHhcCcCcceeEEEcCc--cHHHHHhCCCccccCCCceeEEEEECC---CCeEEEEE
Confidence            3322 22221 1222 33443  7899999975       5799999999   99987663

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.47  E-value=8.4e-14  Score=119.42  Aligned_cols=86  Identities=16%  Similarity=0.310  Sum_probs=69.4

Q ss_pred             cCCCCEEeccc--CCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceecc
Q 014225           48 NQHGTQVKVSD--LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPY  125 (428)
Q Consensus        48 ~~~G~~v~l~~--~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~  125 (428)
                      +++++...+++  .+||+++|+|||+||++|+.++|.|.++++++++.   +.++.|++|....                
T Consensus         5 ~~~~~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~---~~~v~v~vd~~~~----------------   65 (142)
T cd02950           5 QLAASSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ---VNFVMLNVDNPKW----------------   65 (142)
T ss_pred             HHhhccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC---eeEEEEEcCCccc----------------
Confidence            34444444443  37899999999999999999999999999998754   7888888875421                


Q ss_pred             CChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          126 SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       126 ~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                            ..+++.|++.++|+++|+++   +|+++.+
T Consensus        66 ------~~~~~~~~V~~iPt~v~~~~---~G~~v~~   92 (142)
T cd02950          66 ------LPEIDRYRVDGIPHFVFLDR---EGNEEGQ   92 (142)
T ss_pred             ------HHHHHHcCCCCCCEEEEECC---CCCEEEE
Confidence                  46778899999999999998   9988755

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.47  E-value=2.9e-13  Score=111.17  Aligned_cols=74  Identities=16%  Similarity=0.387  Sum_probs=64.6

Q ss_pred             cCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchh
Q 014225          224 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK  303 (428)
Q Consensus       224 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~  303 (428)
                      ..|++++|+||++||++|+.+.|.+.++.+++++.         ++.++.|++|.+                       .
T Consensus        22 ~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~---------~v~~~~vd~d~~-----------------------~   69 (111)
T cd02963          22 SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL---------GVGIATVNAGHE-----------------------R   69 (111)
T ss_pred             cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc---------CceEEEEecccc-----------------------H
Confidence            46799999999999999999999999999999754         578888887754                       5


Q ss_pred             HHHHhcCcCccceEEEECCCCcEEecc
Q 014225          304 ELTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       304 ~~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      .+++.|+|.++||++++ ++|+++.+.
T Consensus        70 ~l~~~~~V~~~Pt~~i~-~~g~~~~~~   95 (111)
T cd02963          70 RLARKLGAHSVPAIVGI-INGQVTFYH   95 (111)
T ss_pred             HHHHHcCCccCCEEEEE-ECCEEEEEe
Confidence            78899999999999999 699887764

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=99.47  E-value=2e-13  Score=124.13  Aligned_cols=118  Identities=16%  Similarity=0.238  Sum_probs=91.3

Q ss_pred             cccccccCc-ccc----CCCCEEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHH
Q 014225           37 LLASKDRDY-LLN----QHGTQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA  110 (428)
Q Consensus        37 ~~g~~~pdf-l~~----~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~  110 (428)
                      .+|+.+||| +.+    .+|++++|++++||+++|+|| +.||+.|..+++.|.+++++|++.|  +++++||.|.....
T Consensus         7 ~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g--~~vv~IS~d~~~~~   84 (199)
T PTZ00253          7 KINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELN--CEVLACSMDSEYAH   84 (199)
T ss_pred             ccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEeCCCHHHH
Confidence            469999999 654    466899999999999999999 5889999999999999999999987  99999999876532


Q ss_pred             HH--HHHh-c--CCCceecc-CChHHHHHHHhhcCCC------CCceEEEEcCCCCCCCcccc
Q 014225          111 FN--NYRA-C--MPWLAVPY-SDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       111 ~~--~~~~-~--~~~~~~~~-~d~~~~~~l~~~~~v~------~~P~~~lid~~~~dG~i~~~  161 (428)
                      ..  ...+ .  .+-+.+|+ .|.+  ..+++.||+.      .+|+++|||+   +|+++..
T Consensus        85 ~~~~~~~~~~~~~~~~~fpll~D~~--~~ia~~ygv~~~~~g~~~r~~fiID~---~G~i~~~  142 (199)
T PTZ00253         85 LQWTLQERKKGGLGTMAIPMLADKT--KSIARSYGVLEEEQGVAYRGLFIIDP---KGMLRQI  142 (199)
T ss_pred             HHHHhChHhhCCccccccceEECcH--hHHHHHcCCcccCCCceEEEEEEECC---CCEEEEE
Confidence            11  1111 1  11122332 2443  8999999985      4689999999   9998865

>PHA02278 thioredoxin-like protein

Probab=99.45  E-value=4.3e-13  Score=108.18  Aligned_cols=77  Identities=18%  Similarity=0.255  Sum_probs=63.5

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+|||+||++|+.+.|.+.++.+++..          .+.++.|++|.+..                  | ..+
T Consensus        13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~----------~~~~~~vdvd~~~~------------------d-~~~   63 (103)
T PHA02278         13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDI----------KKPILTLNLDAEDV------------------D-REK   63 (103)
T ss_pred             CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC----------CceEEEEECCcccc------------------c-cHH
Confidence            568999999999999999999999999877543          35788888885420                  0 256


Q ss_pred             HHHhcCcCccceEEEECCCCcEEeccc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~~  331 (428)
                      +++.|+|.++||++++ ++|+.+.+..
T Consensus        64 l~~~~~I~~iPT~i~f-k~G~~v~~~~   89 (103)
T PHA02278         64 AVKLFDIMSTPVLIGY-KDGQLVKKYE   89 (103)
T ss_pred             HHHHCCCccccEEEEE-ECCEEEEEEe
Confidence            8999999999999999 8999998753

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.45  E-value=4.8e-13  Score=108.94  Aligned_cols=72  Identities=24%  Similarity=0.450  Sum_probs=62.8

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+++|+|+|||+||+||+.+.|.|.++++++++.   +.++-|++|..                        ..+++.|+
T Consensus        13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~---v~f~kVDvD~~------------------------~~la~~~~   65 (114)
T cd02954          13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF---AVIYLVDIDEV------------------------PDFNKMYE   65 (114)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc---eEEEEEECCCC------------------------HHHHHHcC
Confidence            4689999999999999999999999999999764   67777777655                        78899999


Q ss_pred             CCCCceEEEEcCCCCCCCccccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~~  162 (428)
                      |.++||++++.    +|+.+...
T Consensus        66 V~~iPTf~~fk----~G~~v~~~   84 (114)
T cd02954          66 LYDPPTVMFFF----RNKHMKID   84 (114)
T ss_pred             CCCCCEEEEEE----CCEEEEEE
Confidence            99999999999    79888664

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=99.44  E-value=7.6e-13  Score=117.76  Aligned_cols=77  Identities=12%  Similarity=0.058  Sum_probs=68.2

Q ss_pred             cccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecC-------CChHHHH
Q 014225           41 KDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-------EDLNAFN  112 (428)
Q Consensus        41 ~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D-------~~~~~~~  112 (428)
                      .+.+| +.+.+|++++|++++||+|||.|||+||++|. .+|.|++++++|++.|  ++|++|+.+       .+.++++
T Consensus         4 ~~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~g--l~Vlg~p~nqf~~qe~~~~~ei~   80 (183)
T PRK10606          4 SILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQG--FVVLGFPCNQFLGQEPGSDEEIK   80 (183)
T ss_pred             CccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCC--eEEEEeeccccccCCCCCHHHHH
Confidence            46788 89999999999999999999999999999996 6999999999999988  999999985       3567788


Q ss_pred             HHHh-cCCC
Q 014225          113 NYRA-CMPW  120 (428)
Q Consensus       113 ~~~~-~~~~  120 (428)
                      +|.+ +++.
T Consensus        81 ~f~~~~~g~   89 (183)
T PRK10606         81 TYCRTTWGV   89 (183)
T ss_pred             HHHHHccCC
Confidence            8987 5653

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.44  E-value=3.8e-13  Score=108.94  Aligned_cols=75  Identities=17%  Similarity=0.275  Sum_probs=61.6

Q ss_pred             cCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhh
Q 014225           58 DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK  137 (428)
Q Consensus        58 ~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~  137 (428)
                      +.+||+|+|+|||+||++|+.++|.|+++++++ . +  +.++.|+.|.+..                     ...+++.
T Consensus        12 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~-~--v~~~~vd~d~~~~---------------------~~~l~~~   66 (103)
T cd02985          12 KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-N-D--VVFLLVNGDENDS---------------------TMELCRR   66 (103)
T ss_pred             HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-C-C--CEEEEEECCCChH---------------------HHHHHHH
Confidence            346899999999999999999999999999998 2 2  7788887765422                     1578899


Q ss_pred             cCCCCCceEEEEcCCCCCCCcccc
Q 014225          138 FDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       138 ~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      |+|.++||++++ +   +|+++.+
T Consensus        67 ~~V~~~Pt~~~~-~---~G~~v~~   86 (103)
T cd02985          67 EKIIEVPHFLFY-K---DGEKIHE   86 (103)
T ss_pred             cCCCcCCEEEEE-e---CCeEEEE
Confidence            999999998888 4   8977644

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.44  E-value=4.2e-13  Score=107.98  Aligned_cols=71  Identities=14%  Similarity=0.287  Sum_probs=58.2

Q ss_pred             cccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcc
Q 014225          222 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT  301 (428)
Q Consensus       222 ~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~  301 (428)
                      ++++||+++|.|||+||++|+.+.|.|++++++++           ++.++.|..+..                      
T Consensus        14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~-----------~~~~~~vd~~~~----------------------   60 (100)
T cd02999          14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP-----------QIRHLAIEESSI----------------------   60 (100)
T ss_pred             HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc-----------cCceEEEECCCC----------------------
Confidence            34689999999999999999999999999999885           356777765521                      


Q ss_pred             hhHHHHhcCcCccceEEEECCCCcE
Q 014225          302 IKELTKYFDVQGIPCLVIIGPEGKT  326 (428)
Q Consensus       302 ~~~~~~~~~v~~~P~~~lid~~G~i  326 (428)
                      ...+++.|+|.++||+++++ +|.+
T Consensus        61 ~~~l~~~~~V~~~PT~~lf~-~g~~   84 (100)
T cd02999          61 KPSLLSRYGVVGFPTILLFN-STPR   84 (100)
T ss_pred             CHHHHHhcCCeecCEEEEEc-CCce
Confidence            26789999999999999995 4533

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.44  E-value=8.6e-13  Score=105.24  Aligned_cols=72  Identities=21%  Similarity=0.355  Sum_probs=62.6

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      +|++++|+||++||++|+.+.|.+.++++.+.+.          +.++.|++|..                       ..
T Consensus        11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~----------~~~~~vd~~~~-----------------------~~   57 (96)
T cd02956          11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ----------FVLAKVNCDAQ-----------------------PQ   57 (96)
T ss_pred             CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc----------EEEEEEeccCC-----------------------HH
Confidence            4789999999999999999999999999988643          77788887754                       67


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      +++.|+|.++|++++++ +|+++.+.
T Consensus        58 l~~~~~i~~~Pt~~~~~-~g~~~~~~   82 (96)
T cd02956          58 IAQQFGVQALPTVYLFA-AGQPVDGF   82 (96)
T ss_pred             HHHHcCCCCCCEEEEEe-CCEEeeee
Confidence            89999999999999995 99887654

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.41  E-value=1.6e-12  Score=109.18  Aligned_cols=88  Identities=27%  Similarity=0.459  Sum_probs=66.5

Q ss_pred             CC-cEEEEEEeccCChhHHhhhHHHH---HHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCc
Q 014225          225 VG-KTVGLYFSARWCIPCEKFMPKLL---SIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP  300 (428)
Q Consensus       225 ~g-k~vll~F~a~wC~~C~~~~~~l~---~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d  300 (428)
                      .| |+++|+||++||++|+.+.+.+.   ++.+.+++          ++.++.|++|.+.... .         +.....
T Consensus        12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~----------~~~~~~i~~d~~~~~~-~---------~~~~~~   71 (125)
T cd02951          12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA----------HFVVVYINIDGDKEVT-D---------FDGEAL   71 (125)
T ss_pred             cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh----------heEEEEEEccCCceee-c---------cCCCCc
Confidence            47 89999999999999999999885   55556653          4788889887653211 1         111222


Q ss_pred             chhHHHHhcCcCccceEEEECCC-CcEEecccc
Q 014225          301 TIKELTKYFDVQGIPCLVIIGPE-GKTVTKQGR  332 (428)
Q Consensus       301 ~~~~~~~~~~v~~~P~~~lid~~-G~i~~~~~~  332 (428)
                      ...+++..|+|.++|+++++|++ |+++.+..+
T Consensus        72 ~~~~l~~~~~v~~~Pt~~~~~~~gg~~~~~~~G  104 (125)
T cd02951          72 SEKELARKYRVRFTPTVIFLDPEGGKEIARLPG  104 (125)
T ss_pred             cHHHHHHHcCCccccEEEEEcCCCCceeEEecC
Confidence            45789999999999999999999 899887543

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=99.41  E-value=3.9e-13  Score=116.22  Aligned_cols=88  Identities=18%  Similarity=0.296  Sum_probs=63.2

Q ss_pred             CCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChH
Q 014225           50 HGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLE  129 (428)
Q Consensus        50 ~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~  129 (428)
                      .|+++.++++    .+|+|||+||++|++++|.|+++++++   +  +.+++|++|....      ..++   ..+ +.+
T Consensus        43 ~G~~~~l~~~----~lvnFWAsWCppCr~e~P~L~~l~~~~---~--~~Vi~Vs~d~~~~------~~fp---~~~-~~~  103 (153)
T TIGR02738        43 QGRHANQDDY----ALVFFYQSTCPYCHQFAPVLKRFSQQF---G--LPVYAFSLDGQGL------TGFP---DPL-PAT  103 (153)
T ss_pred             cchhhhcCCC----EEEEEECCCChhHHHHHHHHHHHHHHc---C--CcEEEEEeCCCcc------cccc---ccc-CCc
Confidence            4666666554    499999999999999999999999987   3  7799999886531      1122   111 111


Q ss_pred             HHHHHHhhc---CCCCCceEEEEcCCCCCCCccc
Q 014225          130 TKKALNRKF---DIEGIPCLVVLQPYDDKDDATL  160 (428)
Q Consensus       130 ~~~~l~~~~---~v~~~P~~~lid~~~~dG~i~~  160 (428)
                      . ..+...|   ++.++|++++||+   +|.++.
T Consensus       104 ~-~~~~~~~~~~~v~~iPTt~LID~---~G~~i~  133 (153)
T TIGR02738       104 P-EVMQTFFPNPRPVVTPATFLVNV---NTRKAY  133 (153)
T ss_pred             h-HHHHHHhccCCCCCCCeEEEEeC---CCCEEE
Confidence            1 2333455   8899999999999   987643

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.39  E-value=1.2e-12  Score=121.27  Aligned_cols=74  Identities=27%  Similarity=0.468  Sum_probs=67.3

Q ss_pred             cCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchh
Q 014225          224 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK  303 (428)
Q Consensus       224 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~  303 (428)
                      -+-++|||+||+|||++|+.++|.|+++..+|+++          |.++.|++|.+                       .
T Consensus        41 S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~----------f~LakvN~D~~-----------------------p   87 (304)
T COG3118          41 SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK----------FKLAKVNCDAE-----------------------P   87 (304)
T ss_pred             ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc----------eEEEEecCCcc-----------------------h
Confidence            34579999999999999999999999999999876          89999999976                       6


Q ss_pred             HHHHhcCcCccceEEEECCCCcEEeccc
Q 014225          304 ELTKYFDVQGIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       304 ~~~~~~~v~~~P~~~lid~~G~i~~~~~  331 (428)
                      .++..|||+++|++|+| ++|+.+.-+.
T Consensus        88 ~vAaqfgiqsIPtV~af-~dGqpVdgF~  114 (304)
T COG3118          88 MVAAQFGVQSIPTVYAF-KDGQPVDGFQ  114 (304)
T ss_pred             hHHHHhCcCcCCeEEEe-eCCcCccccC
Confidence            89999999999999999 9999998754

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.39  E-value=1.3e-12  Score=105.18  Aligned_cols=68  Identities=15%  Similarity=0.347  Sum_probs=56.4

Q ss_pred             ccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHh
Q 014225           57 SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR  136 (428)
Q Consensus        57 ~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~  136 (428)
                      ++++||+++|+|||+||++|+.++|.+.++++++++    +.++.|+.+. ..                      ..+++
T Consensus        14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~----~~~~~vd~~~-~~----------------------~~l~~   66 (100)
T cd02999          14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ----IRHLAIEESS-IK----------------------PSLLS   66 (100)
T ss_pred             HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc----CceEEEECCC-CC----------------------HHHHH
Confidence            357899999999999999999999999999999853    5566654331 11                      57889


Q ss_pred             hcCCCCCceEEEEcC
Q 014225          137 KFDIEGIPCLVVLQP  151 (428)
Q Consensus       137 ~~~v~~~P~~~lid~  151 (428)
                      .|++.++||++++++
T Consensus        67 ~~~V~~~PT~~lf~~   81 (100)
T cd02999          67 RYGVVGFPTILLFNS   81 (100)
T ss_pred             hcCCeecCEEEEEcC
Confidence            999999999999985

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=1.7e-12  Score=104.84  Aligned_cols=70  Identities=31%  Similarity=0.552  Sum_probs=62.7

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+|.++++|+|+||+||+.+.|.+.+|..+|.           ++.++.|++|..                       .+
T Consensus        20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~-----------~v~Flkvdvde~-----------------------~~   65 (106)
T KOG0907|consen   20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYP-----------DVVFLKVDVDEL-----------------------EE   65 (106)
T ss_pred             CCCeEEEEEECCCCcchhhhhhHHHHHHHHCC-----------CCEEEEEecccC-----------------------Hh
Confidence            36899999999999999999999999999986           468888888852                       78


Q ss_pred             HHHhcCcCccceEEEECCCCcEEec
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTK  329 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~  329 (428)
                      +++.|+|..+||++++ ++|+.+.+
T Consensus        66 ~~~~~~V~~~PTf~f~-k~g~~~~~   89 (106)
T KOG0907|consen   66 VAKEFNVKAMPTFVFY-KGGEEVDE   89 (106)
T ss_pred             HHHhcCceEeeEEEEE-ECCEEEEE
Confidence            9999999999999999 99988877

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.38  E-value=2.1e-12  Score=104.14  Aligned_cols=73  Identities=19%  Similarity=0.318  Sum_probs=62.9

Q ss_pred             cCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchh
Q 014225          224 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK  303 (428)
Q Consensus       224 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~  303 (428)
                      ..+++++|.||++||++|+++.|.+.++++++++.          +.++.|++|.+                       .
T Consensus        16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~----------~~~~~vd~~~~-----------------------~   62 (101)
T cd03003          16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV----------IRIGAVNCGDD-----------------------R   62 (101)
T ss_pred             cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc----------eEEEEEeCCcc-----------------------H
Confidence            34689999999999999999999999999998643          78888888855                       5


Q ss_pred             HHHHhcCcCccceEEEECCCCcEEecc
Q 014225          304 ELTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       304 ~~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      .+++.|+|+++||++++ ++|+.+.+.
T Consensus        63 ~~~~~~~v~~~Pt~~~~-~~g~~~~~~   88 (101)
T cd03003          63 MLCRSQGVNSYPSLYVF-PSGMNPEKY   88 (101)
T ss_pred             HHHHHcCCCccCEEEEE-cCCCCcccC
Confidence            78999999999999999 888766553

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.38  E-value=7e-12  Score=128.55  Aligned_cols=68  Identities=22%  Similarity=0.473  Sum_probs=56.9

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      ++++++|.|||+||++|+.+.|.+.++++.+.+.+.++.++.|+.+..                        ..+++.|+
T Consensus        17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~------------------------~~l~~~~~   72 (462)
T TIGR01130        17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE------------------------KDLAQKYG   72 (462)
T ss_pred             cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc------------------------HHHHHhCC
Confidence            568999999999999999999999999999987654566666544332                        67899999


Q ss_pred             CCCCceEEEEcC
Q 014225          140 IEGIPCLVVLQP  151 (428)
Q Consensus       140 v~~~P~~~lid~  151 (428)
                      +.++|+++++..
T Consensus        73 i~~~Pt~~~~~~   84 (462)
T TIGR01130        73 VSGYPTLKIFRN   84 (462)
T ss_pred             CccccEEEEEeC
Confidence            999999999984

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PRK09381 trxA thioredoxin; Provisional

Probab=99.37  E-value=3.7e-12  Score=104.16  Aligned_cols=71  Identities=23%  Similarity=0.514  Sum_probs=62.6

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      +++++|+||++||++|+.+.|.|+++++++.+          ++.++.|++|..                       ..+
T Consensus        21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~----------~~~~~~vd~~~~-----------------------~~~   67 (109)
T PRK09381         21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQG----------KLTVAKLNIDQN-----------------------PGT   67 (109)
T ss_pred             CCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC----------CcEEEEEECCCC-----------------------hhH
Confidence            67899999999999999999999999999864          378888888855                       457


Q ss_pred             HHhcCcCccceEEEECCCCcEEecc
Q 014225          306 TKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       306 ~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      ++.|++.++|+++++ ++|+++.+.
T Consensus        68 ~~~~~v~~~Pt~~~~-~~G~~~~~~   91 (109)
T PRK09381         68 APKYGIRGIPTLLLF-KNGEVAATK   91 (109)
T ss_pred             HHhCCCCcCCEEEEE-eCCeEEEEe
Confidence            888999999999999 799988764

>PHA02278 thioredoxin-like protein

Probab=99.37  E-value=1.6e-12  Score=104.87  Aligned_cols=75  Identities=15%  Similarity=0.151  Sum_probs=61.5

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      ++++++|+|||+||+||+.+.|.+.++++++...   +.++.|++|.+..                 +.   ..+++.|+
T Consensus        13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~---~~~~~vdvd~~~~-----------------d~---~~l~~~~~   69 (103)
T PHA02278         13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIK---KPILTLNLDAEDV-----------------DR---EKAVKLFD   69 (103)
T ss_pred             CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCC---ceEEEEECCcccc-----------------cc---HHHHHHCC
Confidence            5789999999999999999999999998875432   5678888776532                 11   57899999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      |.++||++++.    +|+.+.+
T Consensus        70 I~~iPT~i~fk----~G~~v~~   87 (103)
T PHA02278         70 IMSTPVLIGYK----DGQLVKK   87 (103)
T ss_pred             CccccEEEEEE----CCEEEEE
Confidence            99999999999    7877754

>TIGR02740 TraF-like TraF-like protein

Probab=99.36  E-value=3.1e-12  Score=121.26  Aligned_cols=87  Identities=18%  Similarity=0.295  Sum_probs=70.0

Q ss_pred             eecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCcccccc
Q 014225          218 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF  297 (428)
Q Consensus       218 ~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~  297 (428)
                      ...+++++|+++||+||++||++|+.+.|.|++++++|            ++.|++|++|....           ..||.
T Consensus       158 ~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y------------g~~Vi~VsvD~~~~-----------~~fp~  214 (271)
T TIGR02740       158 DRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRY------------GIEVLPVSVDGGPL-----------PGFPN  214 (271)
T ss_pred             HHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHc------------CcEEEEEeCCCCcc-----------ccCCc
Confidence            46778889999999999999999999999999998887            37899999986532           12444


Q ss_pred             CCcchhHHHHhcCcCccceEEEECCCCcEEe
Q 014225          298 GDPTIKELTKYFDVQGIPCLVIIGPEGKTVT  328 (428)
Q Consensus       298 ~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~  328 (428)
                      .. .+..+++.|||.++|+++|+|++|+.+.
T Consensus       215 ~~-~d~~la~~~gV~~vPtl~Lv~~~~~~v~  244 (271)
T TIGR02740       215 AR-PDAGQAQQLKIRTVPAVFLADPDPNQFT  244 (271)
T ss_pred             cc-CCHHHHHHcCCCcCCeEEEEECCCCEEE
Confidence            42 2356889999999999999999654443

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=1.4e-12  Score=109.51  Aligned_cols=71  Identities=21%  Similarity=0.478  Sum_probs=62.3

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+++|+|+|||+||+||+...|.|+++..+|++.   +.+.-|++|..                        .+++..|+
T Consensus        60 S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~---~k~~kvdtD~~------------------------~ela~~Y~  112 (150)
T KOG0910|consen   60 SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK---FKLYKVDTDEH------------------------PELAEDYE  112 (150)
T ss_pred             cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe---EEEEEEccccc------------------------cchHhhcc
Confidence            3579999999999999999999999999999765   88888877655                        67889999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      |.++|+++++.    ||+.+.+
T Consensus       113 I~avPtvlvfk----nGe~~d~  130 (150)
T KOG0910|consen  113 ISAVPTVLVFK----NGEKVDR  130 (150)
T ss_pred             eeeeeEEEEEE----CCEEeee
Confidence            99999999999    7877633

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.34  E-value=4.6e-12  Score=102.40  Aligned_cols=71  Identities=11%  Similarity=0.265  Sum_probs=59.1

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .|++++|+|||+||++|+.++|.|.++++.+++..  +.++.++.| .                        ..+++.|+
T Consensus        16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~--~~~~~vd~d-~------------------------~~~~~~~~   68 (102)
T cd02948          16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDL--LHFATAEAD-T------------------------IDTLKRYR   68 (102)
T ss_pred             cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCc--EEEEEEeCC-C------------------------HHHHHHcC
Confidence            47899999999999999999999999999987543  677777665 2                        45789999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++|+++++.    +|+.+.+
T Consensus        69 v~~~Pt~~~~~----~g~~~~~   86 (102)
T cd02948          69 GKCEPTFLFYK----NGELVAV   86 (102)
T ss_pred             CCcCcEEEEEE----CCEEEEE
Confidence            99999988886    7876644

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.33  E-value=4.9e-12  Score=103.76  Aligned_cols=71  Identities=10%  Similarity=0.064  Sum_probs=60.2

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|.|||+||++|+.+.|.+.++++++++.          +.++.|++|.+                       ..
T Consensus        28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~----------v~~~~Vd~d~~-----------------------~~   74 (113)
T cd03006          28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ----------VLFVAINCWWP-----------------------QG   74 (113)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC----------eEEEEEECCCC-----------------------hH
Confidence            4689999999999999999999999999998653          78888888755                       45


Q ss_pred             HH-HhcCcCccceEEEECCCCcEEec
Q 014225          305 LT-KYFDVQGIPCLVIIGPEGKTVTK  329 (428)
Q Consensus       305 ~~-~~~~v~~~P~~~lid~~G~i~~~  329 (428)
                      ++ +.|+|.++||+.++ ++|+...+
T Consensus        75 l~~~~~~I~~~PTl~lf-~~g~~~~~   99 (113)
T cd03006          75 KCRKQKHFFYFPVIHLY-YRSRGPIE   99 (113)
T ss_pred             HHHHhcCCcccCEEEEE-ECCccceE
Confidence            67 58999999999999 78875433

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.33  E-value=8.6e-12  Score=107.57  Aligned_cols=89  Identities=18%  Similarity=0.312  Sum_probs=70.4

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+||++||++|+.+.|.++++.+++.+.         ++.++.|++|..                       .+
T Consensus        46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~---------~v~f~~VDvd~~-----------------------~~   93 (152)
T cd02962          46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNN---------NLKFGKIDIGRF-----------------------PN   93 (152)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC---------CeEEEEEECCCC-----------------------HH
Confidence            4578999999999999999999999999998643         689999998866                       56


Q ss_pred             HHHhcCcCc------cceEEEECCCCcEEeccccchhhcccccCCCCC
Q 014225          305 LTKYFDVQG------IPCLVIIGPEGKTVTKQGRNLINLYQENAYPFT  346 (428)
Q Consensus       305 ~~~~~~v~~------~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~  346 (428)
                      +++.|+|.+      +||++++ ++|+.+.+..+-....-+..++.++
T Consensus        94 la~~~~V~~~~~v~~~PT~ilf-~~Gk~v~r~~G~~~~~~~~~~~~~~  140 (152)
T cd02962          94 VAEKFRVSTSPLSKQLPTIILF-QGGKEVARRPYYNDSKGRAVPFTFS  140 (152)
T ss_pred             HHHHcCceecCCcCCCCEEEEE-ECCEEEEEEeccccCcccccccccc
Confidence            788888877      9999999 7999998876644333333333344

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.32  E-value=1.1e-11  Score=104.78  Aligned_cols=98  Identities=11%  Similarity=0.147  Sum_probs=72.3

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++|||.|||+||++|+.+.|.|.++++++++.          +.|+-|++|..                       .+
T Consensus        22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~----------~~~~kVDVDe~-----------------------~d   68 (142)
T PLN00410         22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF----------AVIYLVDITEV-----------------------PD   68 (142)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc----------eEEEEEECCCC-----------------------HH
Confidence            4689999999999999999999999999998754          67889999865                       78


Q ss_pred             HHHhcCcCccceEE-EECCCCc-EEeccccchhhcccccCCCCChHHHHHHHHHHHHHHh
Q 014225          305 LTKYFDVQGIPCLV-IIGPEGK-TVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAK  362 (428)
Q Consensus       305 ~~~~~~v~~~P~~~-lid~~G~-i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~  362 (428)
                      ++..|+|.+.|+++ ++ ++|+ .+.+..++..-..      +.....++|.+.++..++
T Consensus        69 la~~y~I~~~~t~~~ff-k~g~~~vd~~tG~~~k~~------~~~~~k~~l~~~i~~~~~  121 (142)
T PLN00410         69 FNTMYELYDPCTVMFFF-RNKHIMIDLGTGNNNKIN------WALKDKQEFIDIVETVYR  121 (142)
T ss_pred             HHHHcCccCCCcEEEEE-ECCeEEEEEecccccccc------cccCCHHHHHHHHHHHHH
Confidence            99999999887776 66 8887 7776544321111      112234556666655554

>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems

Probab=99.32  E-value=1.1e-11  Score=110.15  Aligned_cols=121  Identities=21%  Similarity=0.354  Sum_probs=95.5

Q ss_pred             hccCCCCccc-CCCCCceecccccCCcEEEEEEeccCCh-hHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC-
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCI-PCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-  278 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~-~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~-  278 (428)
                      .....++|++ |.+|+ .+++++++||+++|+|..+.|| .|...+..|.++.+++...       +.++++|+||+|+ 
T Consensus        28 ~~~~~~~f~L~d~~G~-~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~-------~~~v~~v~ISvDP~   99 (174)
T PF02630_consen   28 NPRIVPDFTLTDQDGK-TVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEE-------GKDVQFVFISVDPE   99 (174)
T ss_dssp             TSCSSST-EEEETTSS-EEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHT-------TTTEEEEEEESSTT
T ss_pred             CCccCCCcEEEcCCCC-EecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhc-------cCceEEEEEEeCCC
Confidence            4556789999 99999 9999999999999999999998 7999999999999999875       5689999999996 


Q ss_pred             --CHHHHHHHHhcCC--ccccccCCcchhHHHHhcCcCc----------------cceEEEECCCCcEEecc
Q 014225          279 --DQTSFESYFGTMP--WLALPFGDPTIKELTKYFDVQG----------------IPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       279 --~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~v~~----------------~P~~~lid~~G~i~~~~  330 (428)
                        +++.+++|.+..+  |..+....+...++.+.|++..                ...++|||++|+++..+
T Consensus       100 ~DTp~~L~~Y~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y  171 (174)
T PF02630_consen  100 RDTPEVLKKYAKKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIY  171 (174)
T ss_dssp             TC-HHHHHHHHHCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEE
T ss_pred             CCCHHHHHHHHHhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEE
Confidence              3677888888654  4444444445677888887631                23689999999999875

In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.32  E-value=6.5e-12  Score=101.79  Aligned_cols=78  Identities=24%  Similarity=0.431  Sum_probs=62.3

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcc
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT  301 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~  301 (428)
                      .||+++|+||++||++|+.+.+.+   .++.+.+++          ++.++.|+++.+..                   .
T Consensus        10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~----------~~~~~~vd~~~~~~-------------------~   60 (104)
T cd02953          10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK----------DVVLLRADWTKNDP-------------------E   60 (104)
T ss_pred             cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC----------CeEEEEEecCCCCH-------------------H
Confidence            578999999999999999999887   567777653          47888888764321                   1


Q ss_pred             hhHHHHhcCcCccceEEEECC-CCcEEeccc
Q 014225          302 IKELTKYFDVQGIPCLVIIGP-EGKTVTKQG  331 (428)
Q Consensus       302 ~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~  331 (428)
                      ...+++.|++.++|+++++++ +|+++.+..
T Consensus        61 ~~~~~~~~~i~~~Pti~~~~~~~g~~~~~~~   91 (104)
T cd02953          61 ITALLKRFGVFGPPTYLFYGPGGEPEPLRLP   91 (104)
T ss_pred             HHHHHHHcCCCCCCEEEEECCCCCCCCcccc
Confidence            267889999999999999998 898877643

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.32  E-value=6.2e-12  Score=103.25  Aligned_cols=74  Identities=20%  Similarity=0.356  Sum_probs=61.7

Q ss_pred             cCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhh
Q 014225           58 DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK  137 (428)
Q Consensus        58 ~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~  137 (428)
                      ..+|++++|+|||+||++|+.+.|.+.++++++++.+  +.++.|++|..                        ..+++.
T Consensus        21 ~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~--v~~~~vd~d~~------------------------~~l~~~   74 (111)
T cd02963          21 KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLG--VGIATVNAGHE------------------------RRLARK   74 (111)
T ss_pred             ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcC--ceEEEEecccc------------------------HHHHHH
Confidence            3468999999999999999999999999999998654  77777765533                        578899


Q ss_pred             cCCCCCceEEEEcCCCCCCCcccc
Q 014225          138 FDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       138 ~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      |+|.++|+++++.    +|+++..
T Consensus        75 ~~V~~~Pt~~i~~----~g~~~~~   94 (111)
T cd02963          75 LGAHSVPAIVGII----NGQVTFY   94 (111)
T ss_pred             cCCccCCEEEEEE----CCEEEEE
Confidence            9999999999996    7866543

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.31  E-value=9e-12  Score=99.31  Aligned_cols=70  Identities=17%  Similarity=0.312  Sum_probs=59.4

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      +|++++|+||++||++|+.+.|.++++++.+.+.   +.++.|+.|..                        ..+++.|+
T Consensus        11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~------------------------~~l~~~~~   63 (96)
T cd02956          11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ---FVLAKVNCDAQ------------------------PQIAQQFG   63 (96)
T ss_pred             CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc---EEEEEEeccCC------------------------HHHHHHcC
Confidence            4789999999999999999999999999998653   66777665543                        67889999


Q ss_pred             CCCCceEEEEcCCCCCCCccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATL  160 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~  160 (428)
                      +.++|++++++    +|+.+.
T Consensus        64 i~~~Pt~~~~~----~g~~~~   80 (96)
T cd02956          64 VQALPTVYLFA----AGQPVD   80 (96)
T ss_pred             CCCCCEEEEEe----CCEEee
Confidence            99999999997    686653

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.31  E-value=5.6e-12  Score=101.60  Aligned_cols=70  Identities=16%  Similarity=0.267  Sum_probs=59.4

Q ss_pred             CCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhc
Q 014225           59 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF  138 (428)
Q Consensus        59 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~  138 (428)
                      .++++++|.||++||++|+.+.|.+.++++++++.   +.+..|+.|..                        ..+++.|
T Consensus        16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~---~~~~~vd~~~~------------------------~~~~~~~   68 (101)
T cd03003          16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV---IRIGAVNCGDD------------------------RMLCRSQ   68 (101)
T ss_pred             cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc---eEEEEEeCCcc------------------------HHHHHHc
Confidence            45689999999999999999999999999999753   77777776543                        6788999


Q ss_pred             CCCCCceEEEEcCCCCCCCcc
Q 014225          139 DIEGIPCLVVLQPYDDKDDAT  159 (428)
Q Consensus       139 ~v~~~P~~~lid~~~~dG~i~  159 (428)
                      ++.++|+++++.    +|+.+
T Consensus        69 ~v~~~Pt~~~~~----~g~~~   85 (101)
T cd03003          69 GVNSYPSLYVFP----SGMNP   85 (101)
T ss_pred             CCCccCEEEEEc----CCCCc
Confidence            999999999996    67543

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.31  E-value=2.2e-11  Score=98.69  Aligned_cols=71  Identities=18%  Similarity=0.300  Sum_probs=57.9

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      ++++++|.||++||++|+.+.|.|.++++++++.       +.++.+..++++..                       ..
T Consensus        14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~-------~~~~~~~~vd~~~~-----------------------~~   63 (104)
T cd03000          14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSS-------GSPVRVGKLDATAY-----------------------SS   63 (104)
T ss_pred             cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhc-------CCcEEEEEEECccC-----------------------Hh
Confidence            3578999999999999999999999999999754       23466777766543                       56


Q ss_pred             HHHhcCcCccceEEEECCCCcE
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKT  326 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i  326 (428)
                      +++.|+|.++|+++++ .+|.+
T Consensus        64 ~~~~~~I~~~Pt~~l~-~~~~~   84 (104)
T cd03000          64 IASEFGVRGYPTIKLL-KGDLA   84 (104)
T ss_pred             HHhhcCCccccEEEEE-cCCCc
Confidence            8889999999999999 45543

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.31  E-value=1.7e-11  Score=98.73  Aligned_cols=68  Identities=21%  Similarity=0.370  Sum_probs=57.6

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      +|+ ++|.|||+||++|+.+.|.|.++++.++..         ++.+..|+++.+                       ..
T Consensus        16 ~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~---------~v~~~~vd~~~~-----------------------~~   62 (101)
T cd02994          16 EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDL---------GINVAKVDVTQE-----------------------PG   62 (101)
T ss_pred             CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccC---------CeEEEEEEccCC-----------------------Hh
Confidence            455 689999999999999999999999876543         578888877754                       56


Q ss_pred             HHHhcCcCccceEEEECCCCcE
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKT  326 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i  326 (428)
                      +++.|+|.++||++++ ++|++
T Consensus        63 ~~~~~~i~~~Pt~~~~-~~g~~   83 (101)
T cd02994          63 LSGRFFVTALPTIYHA-KDGVF   83 (101)
T ss_pred             HHHHcCCcccCEEEEe-CCCCE
Confidence            8899999999999998 88986

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.30  E-value=1.1e-11  Score=100.41  Aligned_cols=72  Identities=18%  Similarity=0.356  Sum_probs=61.0

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      +++++|.||++||++|+.+.|.+.++.+++.+          .+.++.|+++..                       .++
T Consensus        19 ~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~----------~~~~~~vd~~~~-----------------------~~~   65 (104)
T cd03004          19 KEPWLVDFYAPWCGPCQALLPELRKAARALKG----------KVKVGSVDCQKY-----------------------ESL   65 (104)
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC----------CcEEEEEECCch-----------------------HHH
Confidence            57999999999999999999999999999854          377888887754                       678


Q ss_pred             HHhcCcCccceEEEECCCCcEEecc
Q 014225          306 TKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       306 ~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      ++.|+|.++||++++..+|+.+.+.
T Consensus        66 ~~~~~i~~~Pt~~~~~~g~~~~~~~   90 (104)
T cd03004          66 CQQANIRAYPTIRLYPGNASKYHSY   90 (104)
T ss_pred             HHHcCCCcccEEEEEcCCCCCceEc
Confidence            9999999999999996654666554

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>PRK10996 thioredoxin 2; Provisional

Probab=99.30  E-value=2.6e-11  Score=103.60  Aligned_cols=72  Identities=28%  Similarity=0.535  Sum_probs=62.0

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+||++||++|+.+.|.|.++++++.+          ++.++.|+++..                       ..
T Consensus        51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~----------~v~~~~vd~~~~-----------------------~~   97 (139)
T PRK10996         51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG----------KVRFVKVNTEAE-----------------------RE   97 (139)
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC----------CeEEEEEeCCCC-----------------------HH
Confidence            478999999999999999999999999988754          477888877644                       67


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      +++.|+|.++|+++++ ++|+++.+.
T Consensus        98 l~~~~~V~~~Ptlii~-~~G~~v~~~  122 (139)
T PRK10996         98 LSARFRIRSIPTIMIF-KNGQVVDML  122 (139)
T ss_pred             HHHhcCCCccCEEEEE-ECCEEEEEE
Confidence            8999999999999998 689988774

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=99.29  E-value=4.7e-12  Score=103.96  Aligned_cols=96  Identities=27%  Similarity=0.481  Sum_probs=65.3

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .||+++++||++|||+|+.+.+.+.+..+ +...+      ..++.++.++++.+......++...+.   +.......+
T Consensus         4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~   73 (112)
T PF13098_consen    4 NGKPIVVVFTDPWCPYCKKLEKELFPDND-VARYL------KDDFQVIFVNIDDSRDESEAVLDFDGQ---KNVRLSNKE   73 (112)
T ss_dssp             TSSEEEEEEE-TT-HHHHHHHHHHHHHHH-HHCEE------HCECEEEECESHSHHHHHHHHHSHTCH---SSCHHHHHH
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHH-HHHHh------hcCeEEEEEecCCcccccccccccccc---hhhhHHHHH
Confidence            47999999999999999999998886443 21110      124788999988665555555443221   111223468


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      +.+.|||.++||++++|++|+++.+.
T Consensus        74 l~~~~~v~gtPt~~~~d~~G~~v~~~   99 (112)
T PF13098_consen   74 LAQRYGVNGTPTIVFLDKDGKIVYRI   99 (112)
T ss_dssp             HHHHTT--SSSEEEECTTTSCEEEEE
T ss_pred             HHHHcCCCccCEEEEEcCCCCEEEEe
Confidence            99999999999999999999988763

...

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.27  E-value=2e-11  Score=98.62  Aligned_cols=72  Identities=19%  Similarity=0.285  Sum_probs=62.3

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+|+|||.|+|+||++|+.+.|.|.+++++|+..          +.++.|++|..                       .+
T Consensus        13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~----------~~f~kVDVDev-----------------------~d   59 (114)
T cd02986          13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM----------ASIYLVDVDKV-----------------------PV   59 (114)
T ss_pred             CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc----------eEEEEEecccc-----------------------HH
Confidence            5799999999999999999999999999998632          67888888855                       78


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      +++.|+|.+.||++++ ++|+-+..+
T Consensus        60 va~~y~I~amPtfvff-kngkh~~~d   84 (114)
T cd02986          60 YTQYFDISYIPSTIFF-FNGQHMKVD   84 (114)
T ss_pred             HHHhcCceeCcEEEEE-ECCcEEEEe
Confidence            9999999999999999 888665543

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=99.27  E-value=1.6e-11  Score=106.89  Aligned_cols=116  Identities=15%  Similarity=0.249  Sum_probs=90.8

Q ss_pred             ccccccCc-cccCC---CCEEeccc-CCCCE-EEEEEecCCChhhhhh-HHHHHHHHHHHhcCCCcE-EEEEEecCCChH
Q 014225           38 LASKDRDY-LLNQH---GTQVKVSD-LEGKV-TALYFSANWYPPCGNF-TGVLVDVYEELRNNGSDF-EVVFVSSDEDLN  109 (428)
Q Consensus        38 ~g~~~pdf-l~~~~---G~~v~l~~-~~gk~-vlv~F~a~wC~~C~~~-~p~l~~l~~~~~~~~~~~-~ii~vs~D~~~~  109 (428)
                      +|+.+||| |.+.+   |+.++|++ ++||. |+++|.+.||+.|..+ ++.+++.+++|++.|  + +|++||.|....
T Consensus         1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g--~~~V~~iS~D~~~~   78 (155)
T cd03013           1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKG--VDEVICVSVNDPFV   78 (155)
T ss_pred             CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC--CCEEEEEECCCHHH
Confidence            48899999 98875   99999999 58875 5555559999999999 999999999999887  8 599999987664


Q ss_pred             HHHHHHhcCCC-ceec-cCChHHHHHHHhhcCCC-----------CCceEEEEcCCCCCCCccccc
Q 014225          110 AFNNYRACMPW-LAVP-YSDLETKKALNRKFDIE-----------GIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       110 ~~~~~~~~~~~-~~~~-~~d~~~~~~l~~~~~v~-----------~~P~~~lid~~~~dG~i~~~~  162 (428)
                       .++|.++++. ..++ .+|.+  ..+++.||+.           ....++|||    +|+|++..
T Consensus        79 -~~~~~~~~~~~~~f~lLsD~~--~~~~~~ygv~~~~~~~~~~~~~~R~~fiId----~g~I~~~~  137 (155)
T cd03013          79 -MKAWGKALGAKDKIRFLADGN--GEFTKALGLTLDLSAAGGGIRSKRYALIVD----DGKVKYLF  137 (155)
T ss_pred             -HHHHHHhhCCCCcEEEEECCC--HHHHHHcCCCccccccCCcceeeeEEEEEC----CCEEEEEE
Confidence             7778777765 2233 34554  8999999973           135678888    68887653

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.27  E-value=2.8e-11  Score=98.82  Aligned_cols=74  Identities=20%  Similarity=0.359  Sum_probs=59.9

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      +++++|.||++||++|+++.|.+.++++.++...   ++ ...+.++.|++|.+                       .++
T Consensus        18 ~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~---~~-~~~~~~~~vd~d~~-----------------------~~l   70 (108)
T cd02996          18 AELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEF---PD-AGKVVWGKVDCDKE-----------------------SDI   70 (108)
T ss_pred             CCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhcc---CC-CCcEEEEEEECCCC-----------------------HHH
Confidence            5789999999999999999999999999886430   00 01377777777755                       678


Q ss_pred             HHhcCcCccceEEEECCCCcEE
Q 014225          306 TKYFDVQGIPCLVIIGPEGKTV  327 (428)
Q Consensus       306 ~~~~~v~~~P~~~lid~~G~i~  327 (428)
                      +++|+|+++||++++ ++|++.
T Consensus        71 ~~~~~v~~~Ptl~~~-~~g~~~   91 (108)
T cd02996          71 ADRYRINKYPTLKLF-RNGMMM   91 (108)
T ss_pred             HHhCCCCcCCEEEEE-eCCcCc
Confidence            999999999999999 888843

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=99.27  E-value=1.2e-11  Score=102.35  Aligned_cols=76  Identities=22%  Similarity=0.479  Sum_probs=57.8

Q ss_pred             cccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcc
Q 014225          222 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT  301 (428)
Q Consensus       222 ~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~  301 (428)
                      +...+|+|+|+|||+||++|+.+.|.+.+.......          +..++.|.+|.+.                     
T Consensus        15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~----------~~~fv~v~vd~~~---------------------   63 (117)
T cd02959          15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL----------SHNFVMVNLEDDE---------------------   63 (117)
T ss_pred             HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh----------cCcEEEEEecCCC---------------------
Confidence            344689999999999999999999999887665432          2356666776442                     


Q ss_pred             hhHHHHhcCcCc--cceEEEECCCCcEEec
Q 014225          302 IKELTKYFDVQG--IPCLVIIGPEGKTVTK  329 (428)
Q Consensus       302 ~~~~~~~~~v~~--~P~~~lid~~G~i~~~  329 (428)
                       ......|++.+  +|+++++|++|+++.+
T Consensus        64 -~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~   92 (117)
T cd02959          64 -EPKDEEFSPDGGYIPRILFLDPSGDVHPE   92 (117)
T ss_pred             -CchhhhcccCCCccceEEEECCCCCCchh
Confidence             22345677765  9999999999999875

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.26  E-value=3.4e-11  Score=99.11  Aligned_cols=71  Identities=17%  Similarity=0.253  Sum_probs=62.1

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      +++|+|+||++||++|+.+.|.|.++.+++.           ++.++-|+++..                       ..+
T Consensus        22 ~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~-----------~i~f~~Vd~~~~-----------------------~~l   67 (113)
T cd02989          22 SERVVCHFYHPEFFRCKIMDKHLEILAKKHL-----------ETKFIKVNAEKA-----------------------PFL   67 (113)
T ss_pred             CCcEEEEEECCCCccHHHHHHHHHHHHHHcC-----------CCEEEEEEcccC-----------------------HHH
Confidence            4789999999999999999999999998874           468888887755                       678


Q ss_pred             HHhcCcCccceEEEECCCCcEEeccc
Q 014225          306 TKYFDVQGIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       306 ~~~~~v~~~P~~~lid~~G~i~~~~~  331 (428)
                      ++.|+|.++||++++ ++|+.+.+..
T Consensus        68 ~~~~~v~~vPt~l~f-k~G~~v~~~~   92 (113)
T cd02989          68 VEKLNIKVLPTVILF-KNGKTVDRIV   92 (113)
T ss_pred             HHHCCCccCCEEEEE-ECCEEEEEEE
Confidence            999999999999999 8999887743

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.25  E-value=2.7e-11  Score=99.09  Aligned_cols=73  Identities=15%  Similarity=0.372  Sum_probs=60.6

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      +|++++|.||++||++|+++.|.|.++++.+++.         ++.++.|.+|.+.                      ..
T Consensus        20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~---------~~~~~~vd~d~~~----------------------~~   68 (109)
T cd02993          20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGS---------NVKVAKFNADGEQ----------------------RE   68 (109)
T ss_pred             cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccC---------CeEEEEEECCccc----------------------hh
Confidence            4789999999999999999999999999998754         6889998888631                      44


Q ss_pred             HHH-hcCcCccceEEEECCCCcEEe
Q 014225          305 LTK-YFDVQGIPCLVIIGPEGKTVT  328 (428)
Q Consensus       305 ~~~-~~~v~~~P~~~lid~~G~i~~  328 (428)
                      ++. .|+++++||+++++++|+...
T Consensus        69 ~~~~~~~v~~~Pti~~f~~~~~~~~   93 (109)
T cd02993          69 FAKEELQLKSFPTILFFPKNSRQPI   93 (109)
T ss_pred             hHHhhcCCCcCCEEEEEcCCCCCce
Confidence            554 599999999999987765443

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.25  E-value=4e-11  Score=97.85  Aligned_cols=69  Identities=28%  Similarity=0.476  Sum_probs=59.5

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .|++++|.||++||++|+++.|.+.++++.+.+.          +.++.|++|.+.                     ...
T Consensus        17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~----------~~~~~v~~~~~~---------------------~~~   65 (109)
T cd03002          17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL----------VQVAAVDCDEDK---------------------NKP   65 (109)
T ss_pred             CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC----------ceEEEEecCccc---------------------cHH
Confidence            3688999999999999999999999999988643          788888888532                     267


Q ss_pred             HHHhcCcCccceEEEECCCC
Q 014225          305 LTKYFDVQGIPCLVIIGPEG  324 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G  324 (428)
                      +++.|+|.++|+++++++++
T Consensus        66 ~~~~~~i~~~Pt~~~~~~~~   85 (109)
T cd03002          66 LCGKYGVQGFPTLKVFRPPK   85 (109)
T ss_pred             HHHHcCCCcCCEEEEEeCCC
Confidence            89999999999999997776

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.25  E-value=3.9e-11  Score=95.69  Aligned_cols=72  Identities=18%  Similarity=0.398  Sum_probs=60.1

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      +++++|.||++||++|+.+.|.|.++.+++..          ++.++.|+.+..                       .++
T Consensus        14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~----------~i~~~~vd~~~~-----------------------~~~   60 (97)
T cd02984          14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP----------SVLFLSIEAEEL-----------------------PEI   60 (97)
T ss_pred             CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC----------ceEEEEEccccC-----------------------HHH
Confidence            68999999999999999999999999988732          466766655432                       678


Q ss_pred             HHhcCcCccceEEEECCCCcEEeccc
Q 014225          306 TKYFDVQGIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       306 ~~~~~v~~~P~~~lid~~G~i~~~~~  331 (428)
                      ++.|++.++||++++ ++|+++.+..
T Consensus        61 ~~~~~i~~~Pt~~~~-~~g~~~~~~~   85 (97)
T cd02984          61 SEKFEITAVPTFVFF-RNGTIVDRVS   85 (97)
T ss_pred             HHhcCCccccEEEEE-ECCEEEEEEe
Confidence            999999999999999 6899887743

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=1.3e-11  Score=99.77  Aligned_cols=69  Identities=19%  Similarity=0.421  Sum_probs=59.6

Q ss_pred             CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225           61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI  140 (428)
Q Consensus        61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v  140 (428)
                      +|+++|+|+|+||+||+.+.|.+.+++.+|.+    +.++.|++|.  -                      ..+++.+++
T Consensus        21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~----v~Flkvdvde--~----------------------~~~~~~~~V   72 (106)
T KOG0907|consen   21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD----VVFLKVDVDE--L----------------------EEVAKEFNV   72 (106)
T ss_pred             CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC----CEEEEEeccc--C----------------------HhHHHhcCc
Confidence            69999999999999999999999999999865    6677777665  2                      789999999


Q ss_pred             CCCceEEEEcCCCCCCCcccc
Q 014225          141 EGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       141 ~~~P~~~lid~~~~dG~i~~~  161 (428)
                      ..+||++++.    +|+.+..
T Consensus        73 ~~~PTf~f~k----~g~~~~~   89 (106)
T KOG0907|consen   73 KAMPTFVFYK----GGEEVDE   89 (106)
T ss_pred             eEeeEEEEEE----CCEEEEE
Confidence            9999999997    6765543

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.24  E-value=6.7e-11  Score=95.11  Aligned_cols=72  Identities=33%  Similarity=0.678  Sum_probs=62.4

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+||++||++|+.+.|.|.++.+++.+          ++.++.|+++..                       ..
T Consensus        16 ~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~----------~v~~~~vd~~~~-----------------------~~   62 (103)
T PF00085_consen   16 SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD----------NVKFAKVDCDEN-----------------------KE   62 (103)
T ss_dssp             TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT----------TSEEEEEETTTS-----------------------HH
T ss_pred             cCCCEEEEEeCCCCCccccccceeccccccccc----------ccccchhhhhcc-----------------------ch
Confidence            368999999999999999999999999999864          478888887754                       68


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      +++.|+|.++|+++++ .+|+...+.
T Consensus        63 l~~~~~v~~~Pt~~~~-~~g~~~~~~   87 (103)
T PF00085_consen   63 LCKKYGVKSVPTIIFF-KNGKEVKRY   87 (103)
T ss_dssp             HHHHTTCSSSSEEEEE-ETTEEEEEE
T ss_pred             hhhccCCCCCCEEEEE-ECCcEEEEE
Confidence            9999999999999999 778777653

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.24  E-value=3.3e-11  Score=98.81  Aligned_cols=68  Identities=10%  Similarity=0.144  Sum_probs=56.9

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHH-hhc
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN-RKF  138 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~-~~~  138 (428)
                      .+++++|.|||+||++|+.+.|.+.++++++++.   +.++.|+.|..                        ..++ +.|
T Consensus        28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~---v~~~~Vd~d~~------------------------~~l~~~~~   80 (113)
T cd03006          28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ---VLFVAINCWWP------------------------QGKCRKQK   80 (113)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEECCCC------------------------hHHHHHhc
Confidence            4689999999999999999999999999999764   77777766544                        5566 589


Q ss_pred             CCCCCceEEEEcCCCCCCCc
Q 014225          139 DIEGIPCLVVLQPYDDKDDA  158 (428)
Q Consensus       139 ~v~~~P~~~lid~~~~dG~i  158 (428)
                      +|.++||+.++.    +|+.
T Consensus        81 ~I~~~PTl~lf~----~g~~   96 (113)
T cd03006          81 HFFYFPVIHLYY----RSRG   96 (113)
T ss_pred             CCcccCEEEEEE----CCcc
Confidence            999999999996    6754

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems

Probab=99.24  E-value=7.4e-11  Score=104.78  Aligned_cols=120  Identities=21%  Similarity=0.382  Sum_probs=95.8

Q ss_pred             ccccccCc-cccCCCCEEecccCCCCEEEEEEecCCCh-hhhhhHHHHHHHHHHHhcCCCcEEEEEEecCC---ChHHHH
Q 014225           38 LASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYP-PCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE---DLNAFN  112 (428)
Q Consensus        38 ~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~---~~~~~~  112 (428)
                      .....++| |+|.+|+++++++++||+++|+|..+.|| .|...+..|+++.+++.+.+.++++++|++|.   +.+.++
T Consensus        28 ~~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~  107 (174)
T PF02630_consen   28 NPRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLK  107 (174)
T ss_dssp             TSCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHH
T ss_pred             CCccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHH
Confidence            45667889 99999999999999999999999999998 99999999999999999877789999999984   357788


Q ss_pred             HHHhcCC--CceeccCChHHHHHHHhhcCCC----------------CCceEEEEcCCCCCCCcccc
Q 014225          113 NYRACMP--WLAVPYSDLETKKALNRKFDIE----------------GIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       113 ~~~~~~~--~~~~~~~d~~~~~~l~~~~~v~----------------~~P~~~lid~~~~dG~i~~~  161 (428)
                      +|.+.++  |..+.+ ......++++.|++.                ....++|||+   +|+++..
T Consensus       108 ~Y~~~~~~~~~~ltg-~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp---~G~i~~~  170 (174)
T PF02630_consen  108 KYAKKFGPDFIGLTG-SREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDP---DGRIRAI  170 (174)
T ss_dssp             HHHHCHTTTCEEEEE-EHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-T---TSEEEEE
T ss_pred             HHHHhcCCCcceeEe-CHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcC---CCcEEEE
Confidence            8888653  555544 444447888888753                3457899999   9988754

In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.24  E-value=3.3e-11  Score=97.43  Aligned_cols=71  Identities=20%  Similarity=0.263  Sum_probs=59.6

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+|+|+|.|+|+||+||+.+.|.|.++++++++.   +.++.|++|+.                        ..+++.|+
T Consensus        13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~---~~f~kVDVDev------------------------~dva~~y~   65 (114)
T cd02986          13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM---ASIYLVDVDKV------------------------PVYTQYFD   65 (114)
T ss_pred             CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc---eEEEEEecccc------------------------HHHHHhcC
Confidence            5899999999999999999999999999999653   66666666544                        78999999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.+.|+++++.    +|+-..-
T Consensus        66 I~amPtfvffk----ngkh~~~   83 (114)
T cd02986          66 ISYIPSTIFFF----NGQHMKV   83 (114)
T ss_pred             ceeCcEEEEEE----CCcEEEE
Confidence            99999999888    5755433

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.24  E-value=6.9e-11  Score=94.52  Aligned_cols=72  Identities=17%  Similarity=0.382  Sum_probs=61.9

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++|+++||++||++|+.+.|.+.++.+++.+          ++.++.|+.|..                       .+
T Consensus        12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~----------~v~~~~id~d~~-----------------------~~   58 (97)
T cd02949          12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG----------AVHFVEIDIDED-----------------------QE   58 (97)
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC----------ceEEEEEECCCC-----------------------HH
Confidence            468999999999999999999999999988764          377888887754                       57


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      +.+.|+|.++|+++++ ++|+++.+.
T Consensus        59 l~~~~~v~~vPt~~i~-~~g~~v~~~   83 (97)
T cd02949          59 IAEAAGIMGTPTVQFF-KDKELVKEI   83 (97)
T ss_pred             HHHHCCCeeccEEEEE-ECCeEEEEE
Confidence            8899999999999999 689988764

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.23  E-value=7.2e-11  Score=95.00  Aligned_cols=72  Identities=25%  Similarity=0.508  Sum_probs=59.9

Q ss_pred             EEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHH
Q 014225          228 TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTK  307 (428)
Q Consensus       228 ~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  307 (428)
                      +++|+||++||++|+.+.|.+.++++++++.       ...+.++.|+++.+                       ..+++
T Consensus        18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~-------~~~~~~~~vd~~~~-----------------------~~~~~   67 (102)
T cd03005          18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNE-------NPSVKIAKVDCTQH-----------------------RELCS   67 (102)
T ss_pred             CEEEEEECCCCHHHHHhCHHHHHHHHHHhcc-------CCcEEEEEEECCCC-----------------------hhhHh
Confidence            4999999999999999999999999999762       12578887777644                       57888


Q ss_pred             hcCcCccceEEEECCCCcEEecc
Q 014225          308 YFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       308 ~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      .|+|.++|+++++ ++|+.+.+.
T Consensus        68 ~~~v~~~Pt~~~~-~~g~~~~~~   89 (102)
T cd03005          68 EFQVRGYPTLLLF-KDGEKVDKY   89 (102)
T ss_pred             hcCCCcCCEEEEE-eCCCeeeEe
Confidence            9999999999999 788766543

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>TIGR02740 TraF-like TraF-like protein

Probab=99.23  E-value=1.7e-11  Score=116.13  Aligned_cols=90  Identities=19%  Similarity=0.303  Sum_probs=71.5

Q ss_pred             CCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChH
Q 014225           50 HGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLE  129 (428)
Q Consensus        50 ~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~  129 (428)
                      ..+...+++++|+++||+||++||++|+.++|.|+++++++   |  +.|++|++|.+...           .+|..+.+
T Consensus       155 ~~~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y---g--~~Vi~VsvD~~~~~-----------~fp~~~~d  218 (271)
T TIGR02740       155 KQKDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRY---G--IEVLPVSVDGGPLP-----------GFPNARPD  218 (271)
T ss_pred             HHHHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHc---C--cEEEEEeCCCCccc-----------cCCcccCC
Confidence            33457788999999999999999999999999999999997   3  78999999876431           12222222


Q ss_pred             HHHHHHhhcCCCCCceEEEEcCCCCCCCccc
Q 014225          130 TKKALNRKFDIEGIPCLVVLQPYDDKDDATL  160 (428)
Q Consensus       130 ~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~  160 (428)
                        ..+++.|||.++|+++|+++   +|..+.
T Consensus       219 --~~la~~~gV~~vPtl~Lv~~---~~~~v~  244 (271)
T TIGR02740       219 --AGQAQQLKIRTVPAVFLADP---DPNQFT  244 (271)
T ss_pred             --HHHHHHcCCCcCCeEEEEEC---CCCEEE
Confidence              56789999999999999998   765443

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.23  E-value=3.6e-11  Score=100.82  Aligned_cols=85  Identities=25%  Similarity=0.436  Sum_probs=63.7

Q ss_pred             CC-CEEEEEEecCCChhhhhhHHHHH---HHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHH
Q 014225           60 EG-KVTALYFSANWYPPCGNFTGVLV---DVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN  135 (428)
Q Consensus        60 ~g-k~vlv~F~a~wC~~C~~~~p~l~---~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~  135 (428)
                      +| |+|+|+||++||++|+.+.|.+.   .+.+.+++.   +.++.|++|.+.... .|         .. .......++
T Consensus        12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~---~~~~~i~~d~~~~~~-~~---------~~-~~~~~~~l~   77 (125)
T cd02951          12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAH---FVVVYINIDGDKEVT-DF---------DG-EALSEKELA   77 (125)
T ss_pred             cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhh---eEEEEEEccCCceee-cc---------CC-CCccHHHHH
Confidence            57 89999999999999999999885   566666543   888889887664311 11         10 011227899


Q ss_pred             hhcCCCCCceEEEEcCCCCC-CCcccc
Q 014225          136 RKFDIEGIPCLVVLQPYDDK-DDATLH  161 (428)
Q Consensus       136 ~~~~v~~~P~~~lid~~~~d-G~i~~~  161 (428)
                      ..|++.++|+++++++   + |+++.+
T Consensus        78 ~~~~v~~~Pt~~~~~~---~gg~~~~~  101 (125)
T cd02951          78 RKYRVRFTPTVIFLDP---EGGKEIAR  101 (125)
T ss_pred             HHcCCccccEEEEEcC---CCCceeEE
Confidence            9999999999999998   8 777654

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.23  E-value=5.7e-11  Score=98.21  Aligned_cols=71  Identities=8%  Similarity=0.157  Sum_probs=59.9

Q ss_pred             cEEEEEEeccCChh--HH--hhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcch
Q 014225          227 KTVGLYFSARWCIP--CE--KFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI  302 (428)
Q Consensus       227 k~vll~F~a~wC~~--C~--~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~  302 (428)
                      .++|++||++||++  |+  .+.|.+.+++.++-..        .++.|+.|++|.+                       
T Consensus        28 ~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~--------~~v~~~kVD~d~~-----------------------   76 (120)
T cd03065          28 VLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLED--------KGIGFGLVDSKKD-----------------------   76 (120)
T ss_pred             ceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhc--------CCCEEEEEeCCCC-----------------------
Confidence            58999999999987  99  7888899988887221        2588999998866                       


Q ss_pred             hHHHHhcCcCccceEEEECCCCcEEec
Q 014225          303 KELTKYFDVQGIPCLVIIGPEGKTVTK  329 (428)
Q Consensus       303 ~~~~~~~~v~~~P~~~lid~~G~i~~~  329 (428)
                      .++++.|+|+++||++++ ++|+++..
T Consensus        77 ~~La~~~~I~~iPTl~lf-k~G~~v~~  102 (120)
T cd03065          77 AKVAKKLGLDEEDSIYVF-KDDEVIEY  102 (120)
T ss_pred             HHHHHHcCCccccEEEEE-ECCEEEEe
Confidence            789999999999999999 89998763

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.22  E-value=4e-11  Score=97.01  Aligned_cols=74  Identities=16%  Similarity=0.226  Sum_probs=65.1

Q ss_pred             CCcEEEEEEeccC--ChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcch
Q 014225          225 VGKTVGLYFSARW--CIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI  302 (428)
Q Consensus       225 ~gk~vll~F~a~w--C~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~  302 (428)
                      .|.+++|.||++|  ||+|..+.|.|.++.++|.+.          +.++.|++|.+                       
T Consensus        26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~----------v~f~kVdid~~-----------------------   72 (111)
T cd02965          26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR----------FRAAVVGRADE-----------------------   72 (111)
T ss_pred             CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc----------EEEEEEECCCC-----------------------
Confidence            4577999999997  999999999999999998754          77888888866                       


Q ss_pred             hHHHHhcCcCccceEEEECCCCcEEecccc
Q 014225          303 KELTKYFDVQGIPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       303 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~~  332 (428)
                      .+++..|+|+++||++++ ++|+++.+..|
T Consensus        73 ~~la~~f~V~sIPTli~f-kdGk~v~~~~G  101 (111)
T cd02965          73 QALAARFGVLRTPALLFF-RDGRYVGVLAG  101 (111)
T ss_pred             HHHHHHcCCCcCCEEEEE-ECCEEEEEEeC
Confidence            689999999999999999 89999987543

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.21  E-value=5.3e-11  Score=98.02  Aligned_cols=71  Identities=18%  Similarity=0.315  Sum_probs=59.6

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      +++++|.||++||++|+.+.|.|+++++++.           ++.++.|+++.                       . .+
T Consensus        24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-----------~v~f~~vd~~~-----------------------~-~l   68 (113)
T cd02957          24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYP-----------ETKFVKINAEK-----------------------A-FL   68 (113)
T ss_pred             CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-----------CcEEEEEEchh-----------------------h-HH
Confidence            4789999999999999999999999998874           35666666551                       2 68


Q ss_pred             HHhcCcCccceEEEECCCCcEEecccc
Q 014225          306 TKYFDVQGIPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       306 ~~~~~v~~~P~~~lid~~G~i~~~~~~  332 (428)
                      ++.|+|.++||++++ ++|+.+.+..+
T Consensus        69 ~~~~~i~~~Pt~~~f-~~G~~v~~~~G   94 (113)
T cd02957          69 VNYLDIKVLPTLLVY-KNGELIDNIVG   94 (113)
T ss_pred             HHhcCCCcCCEEEEE-ECCEEEEEEec
Confidence            899999999999999 89999887543

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.21  E-value=6.2e-11  Score=95.96  Aligned_cols=65  Identities=18%  Similarity=0.293  Sum_probs=55.6

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+++++|.|||+||++|+.+.|.+.++++++++.   +.+..|+.|..                        ..+++.|+
T Consensus        18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~~~~------------------------~~~~~~~~   70 (104)
T cd03004          18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKGK---VKVGSVDCQKY------------------------ESLCQQAN   70 (104)
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---cEEEEEECCch------------------------HHHHHHcC
Confidence            3679999999999999999999999999998543   77777655432                        67889999


Q ss_pred             CCCCceEEEEcC
Q 014225          140 IEGIPCLVVLQP  151 (428)
Q Consensus       140 v~~~P~~~lid~  151 (428)
                      +.++|+++++..
T Consensus        71 i~~~Pt~~~~~~   82 (104)
T cd03004          71 IRAYPTIRLYPG   82 (104)
T ss_pred             CCcccEEEEEcC
Confidence            999999999986

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.21  E-value=6.9e-11  Score=94.93  Aligned_cols=71  Identities=25%  Similarity=0.488  Sum_probs=59.8

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      ++++++|.||++||++|+.+.+.|.++++.++..        .++.++.+.++..                       ..
T Consensus        12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~--------~~~~~~~~d~~~~-----------------------~~   60 (102)
T TIGR01126        12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGD--------PDIVLAKVDATAE-----------------------KD   60 (102)
T ss_pred             cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccC--------CceEEEEEEccch-----------------------HH
Confidence            6889999999999999999999999999888753        1477777766543                       67


Q ss_pred             HHHhcCcCccceEEEECCCCcE
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKT  326 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i  326 (428)
                      +++.|++.++|+++++++++.+
T Consensus        61 ~~~~~~i~~~P~~~~~~~~~~~   82 (102)
T TIGR01126        61 LASRFGVSGFPTIKFFPKGKKP   82 (102)
T ss_pred             HHHhCCCCcCCEEEEecCCCcc
Confidence            8899999999999999877763

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.21  E-value=7.8e-11  Score=108.06  Aligned_cols=71  Identities=25%  Similarity=0.476  Sum_probs=59.8

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      +++++|+||++||++|+.+.|.++++++++++.          +.+..|+++.+                       ..+
T Consensus        52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~----------v~~~~VD~~~~-----------------------~~l   98 (224)
T PTZ00443         52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ----------VNVADLDATRA-----------------------LNL   98 (224)
T ss_pred             CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC----------eEEEEecCccc-----------------------HHH
Confidence            578999999999999999999999999988643          66766665543                       678


Q ss_pred             HHhcCcCccceEEEECCCCcEEecc
Q 014225          306 TKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       306 ~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      ++.|+|.++||+++++ +|+++...
T Consensus        99 ~~~~~I~~~PTl~~f~-~G~~v~~~  122 (224)
T PTZ00443         99 AKRFAIKGYPTLLLFD-KGKMYQYE  122 (224)
T ss_pred             HHHcCCCcCCEEEEEE-CCEEEEee
Confidence            9999999999999995 88877654

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.21  E-value=7.6e-11  Score=101.68  Aligned_cols=74  Identities=18%  Similarity=0.350  Sum_probs=61.2

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      ++++++|+||++||++|+.+.|.++++++++.+.+  +.++.|++|..                        ..+++.|+
T Consensus        46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~--v~f~~VDvd~~------------------------~~la~~~~   99 (152)
T cd02962          46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNN--LKFGKIDIGRF------------------------PNVAEKFR   99 (152)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCC--eEEEEEECCCC------------------------HHHHHHcC
Confidence            46799999999999999999999999999987654  88888877665                        45667777


Q ss_pred             CCC------CceEEEEcCCCCCCCcccccc
Q 014225          140 IEG------IPCLVVLQPYDDKDDATLHDG  163 (428)
Q Consensus       140 v~~------~P~~~lid~~~~dG~i~~~~~  163 (428)
                      |.+      +||++++.    +|+.+.+..
T Consensus       100 V~~~~~v~~~PT~ilf~----~Gk~v~r~~  125 (152)
T cd02962         100 VSTSPLSKQLPTIILFQ----GGKEVARRP  125 (152)
T ss_pred             ceecCCcCCCCEEEEEE----CCEEEEEEe
Confidence            766      99999998    788776543

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.20  E-value=8.1e-11  Score=95.37  Aligned_cols=67  Identities=22%  Similarity=0.423  Sum_probs=55.0

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      ++++++|.||++||++|+.+.|.|.++++.+++.+.++.+..++.+..                        ..+++.|+
T Consensus        14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~------------------------~~~~~~~~   69 (104)
T cd03000          14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY------------------------SSIASEFG   69 (104)
T ss_pred             cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC------------------------HhHHhhcC
Confidence            467999999999999999999999999999976553455555544322                        56788999


Q ss_pred             CCCCceEEEEc
Q 014225          140 IEGIPCLVVLQ  150 (428)
Q Consensus       140 v~~~P~~~lid  150 (428)
                      +.++|+++++.
T Consensus        70 I~~~Pt~~l~~   80 (104)
T cd03000          70 VRGYPTIKLLK   80 (104)
T ss_pred             CccccEEEEEc
Confidence            99999999996

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.19  E-value=6.1e-11  Score=96.77  Aligned_cols=67  Identities=33%  Similarity=0.521  Sum_probs=58.2

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .|++++|.||++||++|+.+.|.+.++++++.+.   +.++.|+.|.+..                      ..+++.|+
T Consensus        17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~---~~~~~v~~~~~~~----------------------~~~~~~~~   71 (109)
T cd03002          17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL---VQVAAVDCDEDKN----------------------KPLCGKYG   71 (109)
T ss_pred             CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC---ceEEEEecCcccc----------------------HHHHHHcC
Confidence            4789999999999999999999999999998753   7788887765422                      67889999


Q ss_pred             CCCCceEEEEcC
Q 014225          140 IEGIPCLVVLQP  151 (428)
Q Consensus       140 v~~~P~~~lid~  151 (428)
                      +.++|+++++++
T Consensus        72 i~~~Pt~~~~~~   83 (109)
T cd03002          72 VQGFPTLKVFRP   83 (109)
T ss_pred             CCcCCEEEEEeC
Confidence            999999999997

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>TIGR01068 thioredoxin thioredoxin

Probab=99.19  E-value=1.5e-10  Score=92.71  Aligned_cols=71  Identities=25%  Similarity=0.559  Sum_probs=61.1

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      +++++|+||++||++|+.+.+.|+++.+++.+          ++.++.|.++.+                       ..+
T Consensus        14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~~~vd~~~~-----------------------~~~   60 (101)
T TIGR01068        14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEG----------KVKFVKLNVDEN-----------------------PDI   60 (101)
T ss_pred             CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC----------CeEEEEEECCCC-----------------------HHH
Confidence            46899999999999999999999999988764          378888887754                       568


Q ss_pred             HHhcCcCccceEEEECCCCcEEecc
Q 014225          306 TKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       306 ~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      .+.|++.++|+++++ ++|+++...
T Consensus        61 ~~~~~v~~~P~~~~~-~~g~~~~~~   84 (101)
T TIGR01068        61 AAKYGIRSIPTLLLF-KNGKEVDRS   84 (101)
T ss_pred             HHHcCCCcCCEEEEE-eCCcEeeee
Confidence            899999999999999 788877653

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.19  E-value=1.7e-10  Score=95.08  Aligned_cols=75  Identities=21%  Similarity=0.340  Sum_probs=59.3

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      +++++|.||++||++|+.+.|.++++++++++.       .+.+.+..|+++.+.                     ...+
T Consensus        19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~-------~~~v~~~~vd~~~~~---------------------~~~~   70 (114)
T cd02992          19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKW-------RPVVRVAAVDCADEE---------------------NVAL   70 (114)
T ss_pred             CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhc-------CCceEEEEEeccchh---------------------hHHH
Confidence            379999999999999999999999999998754       224677777665332                     3678


Q ss_pred             HHhcCcCccceEEEECCCCcEEec
Q 014225          306 TKYFDVQGIPCLVIIGPEGKTVTK  329 (428)
Q Consensus       306 ~~~~~v~~~P~~~lid~~G~i~~~  329 (428)
                      ++.|++.++|+++++ ++|.....
T Consensus        71 ~~~~~i~~~Pt~~lf-~~~~~~~~   93 (114)
T cd02992          71 CRDFGVTGYPTLRYF-PPFSKEAT   93 (114)
T ss_pred             HHhCCCCCCCEEEEE-CCCCccCC
Confidence            999999999999999 55554443

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.18  E-value=5.4e-11  Score=95.75  Aligned_cols=69  Identities=16%  Similarity=0.405  Sum_probs=56.0

Q ss_pred             EEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCC
Q 014225           63 VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEG  142 (428)
Q Consensus        63 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~  142 (428)
                      .++|+||++||++|+.++|.++++++++++...++.++.|+.+..                        ..+++.|++.+
T Consensus        18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~------------------------~~~~~~~~v~~   73 (102)
T cd03005          18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH------------------------RELCSEFQVRG   73 (102)
T ss_pred             CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC------------------------hhhHhhcCCCc
Confidence            499999999999999999999999999987322377776654432                        57788899999


Q ss_pred             CceEEEEcCCCCCCCcc
Q 014225          143 IPCLVVLQPYDDKDDAT  159 (428)
Q Consensus       143 ~P~~~lid~~~~dG~i~  159 (428)
                      +|+++++.    +|+.+
T Consensus        74 ~Pt~~~~~----~g~~~   86 (102)
T cd03005          74 YPTLLLFK----DGEKV   86 (102)
T ss_pred             CCEEEEEe----CCCee
Confidence            99999995    67644

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.18  E-value=6.8e-11  Score=95.19  Aligned_cols=69  Identities=20%  Similarity=0.369  Sum_probs=55.6

Q ss_pred             CCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhc
Q 014225           59 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF  138 (428)
Q Consensus        59 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~  138 (428)
                      .+|+ ++|+|||+||++|+.+.|.+.++++.++..+  +.+..|+.|..                        ..+++.|
T Consensus        15 ~~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~--v~~~~vd~~~~------------------------~~~~~~~   67 (101)
T cd02994          15 LEGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLG--INVAKVDVTQE------------------------PGLSGRF   67 (101)
T ss_pred             hCCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCC--eEEEEEEccCC------------------------HhHHHHc
Confidence            3555 6899999999999999999999999876543  77776655433                        5678899


Q ss_pred             CCCCCceEEEEcCCCCCCCc
Q 014225          139 DIEGIPCLVVLQPYDDKDDA  158 (428)
Q Consensus       139 ~v~~~P~~~lid~~~~dG~i  158 (428)
                      ++.++|+++++.    +|++
T Consensus        68 ~i~~~Pt~~~~~----~g~~   83 (101)
T cd02994          68 FVTALPTIYHAK----DGVF   83 (101)
T ss_pred             CCcccCEEEEeC----CCCE
Confidence            999999999884    7864

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>PTZ00051 thioredoxin; Provisional

Probab=99.18  E-value=1e-10  Score=93.50  Aligned_cols=73  Identities=21%  Similarity=0.366  Sum_probs=60.7

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+||++||++|+.+.|.|.++++++.           ++.++.|+.+..                       ..
T Consensus        17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-----------~~~~~~vd~~~~-----------------------~~   62 (98)
T PTZ00051         17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-----------KMVFVKVDVDEL-----------------------SE   62 (98)
T ss_pred             cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-----------CcEEEEEECcch-----------------------HH
Confidence            36789999999999999999999999888653           467777776633                       67


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecccc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~~~  332 (428)
                      +++.|++.++|+++++ ++|+++.+..+
T Consensus        63 ~~~~~~v~~~Pt~~~~-~~g~~~~~~~G   89 (98)
T PTZ00051         63 VAEKENITSMPTFKVF-KNGSVVDTLLG   89 (98)
T ss_pred             HHHHCCCceeeEEEEE-eCCeEEEEEeC
Confidence            8999999999998888 89999877543

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.17  E-value=9.2e-11  Score=99.30  Aligned_cols=68  Identities=18%  Similarity=0.335  Sum_probs=58.0

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+++|+|+|||+||+||+.+.|.|.++++++++.   +.++-|++|..                        +.+++.|+
T Consensus        22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~---~~~~kVDVDe~------------------------~dla~~y~   74 (142)
T PLN00410         22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF---AVIYLVDITEV------------------------PDFNTMYE   74 (142)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc---eEEEEEECCCC------------------------HHHHHHcC
Confidence            5789999999999999999999999999998765   67777777655                        78899999


Q ss_pred             CCCCceEEEEcCCCCCCC
Q 014225          140 IEGIPCLVVLQPYDDKDD  157 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~  157 (428)
                      |.+.|+++++-+   +|.
T Consensus        75 I~~~~t~~~ffk---~g~   89 (142)
T PLN00410         75 LYDPCTVMFFFR---NKH   89 (142)
T ss_pred             ccCCCcEEEEEE---CCe
Confidence            998888885555   786

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.17  E-value=5.7e-11  Score=96.93  Aligned_cols=72  Identities=11%  Similarity=0.243  Sum_probs=57.1

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCC---CcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHh
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNG---SDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR  136 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~---~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~  136 (428)
                      .+++++|+|||+||++|+.+.|.+.++++++++..   .++.+..|+.|..                        ..+++
T Consensus        17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~------------------------~~l~~   72 (108)
T cd02996          17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE------------------------SDIAD   72 (108)
T ss_pred             cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC------------------------HHHHH
Confidence            46899999999999999999999999999886531   1255555544433                        67899


Q ss_pred             hcCCCCCceEEEEcCCCCCCCcc
Q 014225          137 KFDIEGIPCLVVLQPYDDKDDAT  159 (428)
Q Consensus       137 ~~~v~~~P~~~lid~~~~dG~i~  159 (428)
                      .|++.++|+++++.    +|++.
T Consensus        73 ~~~v~~~Ptl~~~~----~g~~~   91 (108)
T cd02996          73 RYRINKYPTLKLFR----NGMMM   91 (108)
T ss_pred             hCCCCcCCEEEEEe----CCcCc
Confidence            99999999999996    67643

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.17  E-value=1.3e-10  Score=95.07  Aligned_cols=67  Identities=15%  Similarity=0.410  Sum_probs=56.2

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHh-hc
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR-KF  138 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~-~~  138 (428)
                      +||+++|.||++||++|+.+.|.+.++++++++.+  +.++.|+.|.+.                       ..+++ .|
T Consensus        20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~--~~~~~vd~d~~~-----------------------~~~~~~~~   74 (109)
T cd02993          20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSN--VKVAKFNADGEQ-----------------------REFAKEEL   74 (109)
T ss_pred             cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCC--eEEEEEECCccc-----------------------hhhHHhhc
Confidence            47899999999999999999999999999998654  888888776521                       33444 58


Q ss_pred             CCCCCceEEEEcC
Q 014225          139 DIEGIPCLVVLQP  151 (428)
Q Consensus       139 ~v~~~P~~~lid~  151 (428)
                      ++.++|+++++++
T Consensus        75 ~v~~~Pti~~f~~   87 (109)
T cd02993          75 QLKSFPTILFFPK   87 (109)
T ss_pred             CCCcCCEEEEEcC
Confidence            9999999999986

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>PTZ00062 glutaredoxin; Provisional

Probab=99.16  E-value=2.1e-10  Score=103.54  Aligned_cols=60  Identities=13%  Similarity=0.097  Sum_probs=50.2

Q ss_pred             CEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCC
Q 014225           62 KVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE  141 (428)
Q Consensus        62 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~  141 (428)
                      ..++++|||+||++|+.+.|.|.++.++|.+    +.++-|+.|                                |+|.
T Consensus        18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~----~~F~~V~~d--------------------------------~~V~   61 (204)
T PTZ00062         18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPS----LEFYVVNLA--------------------------------DANN   61 (204)
T ss_pred             CcEEEEEeCCCCcchHHHHHHHHHHHHHCCC----cEEEEEccc--------------------------------cCcc
Confidence            4689999999999999999999999999843    666665321                                8899


Q ss_pred             CCceEEEEcCCCCCCCcccc
Q 014225          142 GIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       142 ~~P~~~lid~~~~dG~i~~~  161 (428)
                      ++|+++++.    +|+.+.+
T Consensus        62 ~vPtfv~~~----~g~~i~r   77 (204)
T PTZ00062         62 EYGVFEFYQ----NSQLINS   77 (204)
T ss_pred             cceEEEEEE----CCEEEee
Confidence            999999998    7887765

>PRK09381 trxA thioredoxin; Provisional

Probab=99.16  E-value=1.2e-10  Score=95.14  Aligned_cols=83  Identities=19%  Similarity=0.416  Sum_probs=64.3

Q ss_pred             cCCCCEEecccC-CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccC
Q 014225           48 NQHGTQVKVSDL-EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYS  126 (428)
Q Consensus        48 ~~~G~~v~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~  126 (428)
                      ..+++++.-.-. .+++++|+||++||++|+.+.|.++++++++.+.   +.++.|+.|..                   
T Consensus         7 ~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~---~~~~~vd~~~~-------------------   64 (109)
T PRK09381          7 HLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQN-------------------   64 (109)
T ss_pred             eeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC---cEEEEEECCCC-------------------
Confidence            344444432222 3789999999999999999999999999999763   77888776544                   


Q ss_pred             ChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          127 DLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       127 d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                           ..+.+.|++.++|+++++.    +|+++..
T Consensus        65 -----~~~~~~~~v~~~Pt~~~~~----~G~~~~~   90 (109)
T PRK09381         65 -----PGTAPKYGIRGIPTLLLFK----NGEVAAT   90 (109)
T ss_pred             -----hhHHHhCCCCcCCEEEEEe----CCeEEEE
Confidence                 4567889999999999996    7877644

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.16  E-value=1.9e-10  Score=92.87  Aligned_cols=76  Identities=25%  Similarity=0.448  Sum_probs=60.6

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      ++++++|.||++||++|+++.|.+.++.+.+...        ..+.++.|+++.+.                     ...
T Consensus        16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~--------~~~~~~~id~~~~~---------------------~~~   66 (104)
T cd02997          16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKED--------GKGVLAAVDCTKPE---------------------HDA   66 (104)
T ss_pred             hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhC--------CceEEEEEECCCCc---------------------cHH
Confidence            3568999999999999999999999999988743        24666667666421                     267


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      +++.|+|.++|+++++ ++|+++.+.
T Consensus        67 ~~~~~~i~~~Pt~~~~-~~g~~~~~~   91 (104)
T cd02997          67 LKEEYNVKGFPTFKYF-ENGKFVEKY   91 (104)
T ss_pred             HHHhCCCccccEEEEE-eCCCeeEEe
Confidence            8899999999999888 788876654

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>PTZ00062 glutaredoxin; Provisional

Probab=99.15  E-value=9.2e-11  Score=105.82  Aligned_cols=109  Identities=12%  Similarity=0.066  Sum_probs=76.0

Q ss_pred             cEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHH
Q 014225          227 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT  306 (428)
Q Consensus       227 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  306 (428)
                      ..++++|||+|||+|+.+.|.|.++.++|.           ++.++.|+.|                             
T Consensus        18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-----------~~~F~~V~~d-----------------------------   57 (204)
T PTZ00062         18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFP-----------SLEFYVVNLA-----------------------------   57 (204)
T ss_pred             CcEEEEEeCCCCcchHHHHHHHHHHHHHCC-----------CcEEEEEccc-----------------------------
Confidence            447999999999999999999999999875           3556655422                             


Q ss_pred             HhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhcCCCCc-----cccccccceeeee
Q 014225          307 KYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPRSE-----FHIGHRHELNLVS  381 (428)
Q Consensus       307 ~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~  381 (428)
                        |+|.++|+++++ ++|+.+.+..       |+++        .+|...+.+.....+.+.     ...-..|.+.+  
T Consensus        58 --~~V~~vPtfv~~-~~g~~i~r~~-------G~~~--------~~~~~~~~~~~~~~~~~~~~~~v~~li~~~~Vvv--  117 (204)
T PTZ00062         58 --DANNEYGVFEFY-QNSQLINSLE-------GCNT--------STLVSFIRGWAQKGSSEDTVEKIERLIRNHKILL--  117 (204)
T ss_pred             --cCcccceEEEEE-ECCEEEeeee-------CCCH--------HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCEEE--
Confidence              799999999999 8999998843       3332        566666666554333221     11112467777  


Q ss_pred             ccCCCCC---cccccccCC
Q 014225          382 EGTGGGP---FICCDCDEQ  397 (428)
Q Consensus       382 ~~~~~~~---~~c~~C~~~  397 (428)
                        .+.|.   +.|+.|++.
T Consensus       118 --f~Kg~~~~p~C~~C~~~  134 (204)
T PTZ00062        118 --FMKGSKTFPFCRFSNAV  134 (204)
T ss_pred             --EEccCCCCCCChhHHHH
Confidence              55553   578888753

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=7.8e-11  Score=109.41  Aligned_cols=71  Identities=20%  Similarity=0.406  Sum_probs=63.4

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      +-++|+|+||++||++|+..+|.|.++..+|+++   +.+.-|++|..                        ..++..||
T Consensus        42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~---f~LakvN~D~~------------------------p~vAaqfg   94 (304)
T COG3118          42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK---FKLAKVNCDAE------------------------PMVAAQFG   94 (304)
T ss_pred             cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc---eEEEEecCCcc------------------------hhHHHHhC
Confidence            4579999999999999999999999999999887   88888877665                        78999999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      |.++|+.|++.    +|+.+..
T Consensus        95 iqsIPtV~af~----dGqpVdg  112 (304)
T COG3118          95 VQSIPTVYAFK----DGQPVDG  112 (304)
T ss_pred             cCcCCeEEEee----CCcCccc
Confidence            99999999999    7977754

>PRK10996 thioredoxin 2; Provisional

Probab=99.14  E-value=1.4e-10  Score=99.22  Aligned_cols=71  Identities=24%  Similarity=0.505  Sum_probs=59.5

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      ++|+++|+||++||++|+.+.|.|.++++++.+.   +.++.|+.|..                        ..+++.|+
T Consensus        51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~------------------------~~l~~~~~  103 (139)
T PRK10996         51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK---VRFVKVNTEAE------------------------RELSARFR  103 (139)
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---eEEEEEeCCCC------------------------HHHHHhcC
Confidence            5899999999999999999999999999988654   77777655433                        67889999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      |.++|++++++    +|+++..
T Consensus       104 V~~~Ptlii~~----~G~~v~~  121 (139)
T PRK10996        104 IRSIPTIMIFK----NGQVVDM  121 (139)
T ss_pred             CCccCEEEEEE----CCEEEEE
Confidence            99999998886    7877644

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.14  E-value=2.7e-10  Score=93.90  Aligned_cols=69  Identities=26%  Similarity=0.412  Sum_probs=55.6

Q ss_pred             CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225           61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI  140 (428)
Q Consensus        61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v  140 (428)
                      +++++|+||++||++|+.+.|.+.++++++++....+.+..|+.+.+..                      ..+++.|++
T Consensus        19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~----------------------~~~~~~~~i   76 (114)
T cd02992          19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEEN----------------------VALCRDFGV   76 (114)
T ss_pred             CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhh----------------------HHHHHhCCC
Confidence            4799999999999999999999999999997643235555554433222                      678899999


Q ss_pred             CCCceEEEEcC
Q 014225          141 EGIPCLVVLQP  151 (428)
Q Consensus       141 ~~~P~~~lid~  151 (428)
                      .++|+++++.+
T Consensus        77 ~~~Pt~~lf~~   87 (114)
T cd02992          77 TGYPTLRYFPP   87 (114)
T ss_pred             CCCCEEEEECC
Confidence            99999999985

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=2.6e-10  Score=96.00  Aligned_cols=115  Identities=20%  Similarity=0.215  Sum_probs=96.7

Q ss_pred             hhhhccCCCCccc-CCCCCceecccccCCc-EEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEE
Q 014225          199 INLLTNHDRGYLL-GHPPDEKVPVSSLVGK-TVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS  275 (428)
Q Consensus       199 ~~~~g~~~p~f~l-~~~g~~~v~l~~~~gk-~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is  275 (428)
                      .-.+|+.+|||+| |.+|. .++|....|+ +||++|| +...|.|.+....+++-|++++..         +.+|+++|
T Consensus        62 ~v~~Gd~iPD~tL~dedg~-sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka---------~aeV~GlS  131 (211)
T KOG0855|consen   62 KVNKGDAIPDFTLKDEDGK-SISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKA---------GAEVIGLS  131 (211)
T ss_pred             eeecCCcCCCcccccCCCC-eeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhc---------CceEEeec
Confidence            3346999999999 99999 9999999985 8888888 467899999999999999999875         78999999


Q ss_pred             cCCCHHHHHHHHhcCCccccccCCcchhHHHHhcCcCccc-------eEEEECCCCc
Q 014225          276 TDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIP-------CLVIIGPEGK  325 (428)
Q Consensus       276 ~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P-------~~~lid~~G~  325 (428)
                      .| +....++|..+.+ +.+..+.|...++.+.+|+...|       ..+|+|++|.
T Consensus       132 ~D-~s~sqKaF~sKqn-lPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~  186 (211)
T KOG0855|consen  132 GD-DSASQKAFASKQN-LPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGV  186 (211)
T ss_pred             cC-chHHHHHhhhhcc-CCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCCe
Confidence            99 5567778877765 66667899999999999987644       6788878764

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

Probab=99.14  E-value=8.4e-10  Score=100.48  Aligned_cols=133  Identities=20%  Similarity=0.356  Sum_probs=102.5

Q ss_pred             Cccc-CCCCCceecccccCCcEEEEEEeccCCh-hHHhhhHHHHHHHHHHH-hhhhhcCCCCCCEEEEEEEcCC---CHH
Q 014225          208 GYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCI-PCEKFMPKLLSIYQKIK-QNLVEKGDALEDFEVVFVSTDR---DQT  281 (428)
Q Consensus       208 ~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~-~C~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~iv~is~d~---~~~  281 (428)
                      +|.+ +.+|+ .+++..++||+++|+|..+.|| .|..++..|.++.++.. ..       +.++++++|++|+   .++
T Consensus        49 ~f~l~d~~G~-~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~-------~~~v~vv~itvDPerDtp~  120 (207)
T COG1999          49 DFELTDQDGK-PFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGE-------GDDVQVVFITVDPERDTPE  120 (207)
T ss_pred             ceeeecCCCC-EeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhcccc-------CCCEEEEEEEECCCCCCHH
Confidence            6999 99999 9999999999999999999999 69999999999999987 43       6789999999986   456


Q ss_pred             HHHHHHh-cCC--ccccccCCcchhHHHHhcCcCc---------------cceEEEECCCCcEEeccccchhhcccccCC
Q 014225          282 SFESYFG-TMP--WLALPFGDPTIKELTKYFDVQG---------------IPCLVIIGPEGKTVTKQGRNLINLYQENAY  343 (428)
Q Consensus       282 ~~~~~~~-~~~--~~~~~~~~d~~~~~~~~~~v~~---------------~P~~~lid~~G~i~~~~~~~~~~~~g~~~~  343 (428)
                      .+++|.. ...  |..+....+...++++.|+|..               ...+++||++|+++......      ..  
T Consensus       121 ~lk~Y~~~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~------~~--  192 (207)
T COG1999         121 VLKKYAELNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYG------EP--  192 (207)
T ss_pred             HHHHHhcccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCC------CC--
Confidence            7777777 221  4444444556678888888752               23579999999999875321      11  


Q ss_pred             CCChHHHHHHHHHHHHHHh
Q 014225          344 PFTEAKLEFLEKQMEEEAK  362 (428)
Q Consensus       344 p~~~~~~~~L~~~l~~~~~  362 (428)
                            -+++.+.++.+++
T Consensus       193 ------~~~i~~~l~~l~~  205 (207)
T COG1999         193 ------PEEIAADLKKLLK  205 (207)
T ss_pred             ------hHHHHHHHHHHhh
Confidence                  2566677766654

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.13  E-value=2.4e-10  Score=92.54  Aligned_cols=75  Identities=20%  Similarity=0.352  Sum_probs=59.4

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHh
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR  136 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~  136 (428)
                      +||+++|.||++||++|+.+.|.+   .++.+.+++ +  +.++.|+++.+..                    ....+++
T Consensus        10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~--~~~~~vd~~~~~~--------------------~~~~~~~   66 (104)
T cd02953          10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-D--VVLLRADWTKNDP--------------------EITALLK   66 (104)
T ss_pred             cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-C--eEEEEEecCCCCH--------------------HHHHHHH
Confidence            579999999999999999999887   578888865 3  8888887764421                    1168889


Q ss_pred             hcCCCCCceEEEEcCCCCCCCcc
Q 014225          137 KFDIEGIPCLVVLQPYDDKDDAT  159 (428)
Q Consensus       137 ~~~v~~~P~~~lid~~~~dG~i~  159 (428)
                      .|++.++|+++++++  .+|+++
T Consensus        67 ~~~i~~~Pti~~~~~--~~g~~~   87 (104)
T cd02953          67 RFGVFGPPTYLFYGP--GGEPEP   87 (104)
T ss_pred             HcCCCCCCEEEEECC--CCCCCC
Confidence            999999999999984  136554

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]

Probab=99.12  E-value=7.4e-10  Score=100.19  Aligned_cols=140  Identities=21%  Similarity=0.320  Sum_probs=107.0

Q ss_pred             hccCCC--Cccc-CCCCCceecccccCCcEEEEEEeccCCh-hHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC
Q 014225          202 LTNHDR--GYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCI-PCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD  277 (428)
Q Consensus       202 ~g~~~p--~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~-~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d  277 (428)
                      +|.++-  .|+| |.+|+ .++-.+|.||++|++|..+.|| .|..++..|.++.+++.++      .+..+.-|+|++|
T Consensus       113 ~gk~~iGGpF~L~d~~Gk-~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~------~~~~~~PlFIsvD  185 (280)
T KOG2792|consen  113 AGKPAIGGPFSLVDHDGK-RVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAK------PGLPPVPLFISVD  185 (280)
T ss_pred             cCCCccCCceEEEecCCC-eecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhcc------CCCCccceEEEeC
Confidence            455443  5999 99999 9999999999999999999999 6999999999999988765      1223346899999


Q ss_pred             C---CHHHHHHHHhcCC--ccccccCCcchhHHHHhcCcC--ccc-------------eEEEECCCCcEEeccccchhhc
Q 014225          278 R---DQTSFESYFGTMP--WLALPFGDPTIKELTKYFDVQ--GIP-------------CLVIIGPEGKTVTKQGRNLINL  337 (428)
Q Consensus       278 ~---~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~v~--~~P-------------~~~lid~~G~i~~~~~~~~~~~  337 (428)
                      +   +.+.+++|+++.+  .+.+.-..+....+++.|.|-  ..|             .+|||||+|+.+..+|++-   
T Consensus       186 PeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~---  262 (280)
T KOG2792|consen  186 PERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNY---  262 (280)
T ss_pred             cccCCHHHHHHHHHhcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccC---
Confidence            7   6778899999876  345555555667788888872  213             4799999999999887643   


Q ss_pred             ccccCCCCChHHHHHHHHHHHHHHh
Q 014225          338 YQENAYPFTEAKLEFLEKQMEEEAK  362 (428)
Q Consensus       338 ~g~~~~p~~~~~~~~L~~~l~~~~~  362 (428)
                                 ..++|.+.|.+...
T Consensus       263 -----------~~~~~~~~I~~~v~  276 (280)
T KOG2792|consen  263 -----------DADELADSILKHVA  276 (280)
T ss_pred             -----------CHHHHHHHHHHHHH
Confidence                       12566666665544

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=99.12  E-value=1.1e-09  Score=91.15  Aligned_cols=84  Identities=14%  Similarity=0.135  Sum_probs=58.2

Q ss_pred             cCCcEEEEEEeccCChhHHhhhHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCc
Q 014225          224 LVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP  300 (428)
Q Consensus       224 ~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d  300 (428)
                      -.+|+|+|+|+++||++|+.+.+..   .++.+.+..          ++.+|.|+.+...+-.+.+.             
T Consensus        13 ~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~----------~fv~VkvD~~~~~~~~~~~~-------------   69 (124)
T cd02955          13 REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE----------NFVPIKVDREERPDVDKIYM-------------   69 (124)
T ss_pred             HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC----------CEEEEEEeCCcCcHHHHHHH-------------
Confidence            4579999999999999999987632   245554433          46666666654432211111             


Q ss_pred             chhHHHHhcCcCccceEEEECCCCcEEecccc
Q 014225          301 TIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       301 ~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~  332 (428)
                        ......|++.++|+++++|++|++++..+.
T Consensus        70 --~~~~~~~~~~G~Pt~vfl~~~G~~~~~~~~   99 (124)
T cd02955          70 --NAAQAMTGQGGWPLNVFLTPDLKPFFGGTY   99 (124)
T ss_pred             --HHHHHhcCCCCCCEEEEECCCCCEEeeeee
Confidence              223336799999999999999999988654

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.11  E-value=2.3e-10  Score=105.26  Aligned_cols=71  Identities=20%  Similarity=0.282  Sum_probs=55.4

Q ss_pred             cCCcEEEEEEec---cCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCc
Q 014225          224 LVGKTVGLYFSA---RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP  300 (428)
Q Consensus       224 ~~gk~vll~F~a---~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d  300 (428)
                      +++...++.|++   +||++|+.+.|.+.++.+++.           ++++..+++|.+.                    
T Consensus        17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~-----------~~~i~~v~vd~~~--------------------   65 (215)
T TIGR02187        17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP-----------KLKLEIYDFDTPE--------------------   65 (215)
T ss_pred             cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC-----------CceEEEEecCCcc--------------------
Confidence            344445666777   999999999999999998874           3566667776432                    


Q ss_pred             chhHHHHhcCcCccceEEEECCCCcEE
Q 014225          301 TIKELTKYFDVQGIPCLVIIGPEGKTV  327 (428)
Q Consensus       301 ~~~~~~~~~~v~~~P~~~lid~~G~i~  327 (428)
                       ..++++.|+|.++||++++ ++|+.+
T Consensus        66 -~~~l~~~~~V~~~Pt~~~f-~~g~~~   90 (215)
T TIGR02187        66 -DKEEAEKYGVERVPTTIIL-EEGKDG   90 (215)
T ss_pred             -cHHHHHHcCCCccCEEEEE-eCCeee
Confidence             3789999999999999999 567665

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.11  E-value=2.9e-09  Score=109.14  Aligned_cols=181  Identities=15%  Similarity=0.214  Sum_probs=105.5

Q ss_pred             cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCC--CCceEE
Q 014225           70 ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE--GIPCLV  147 (428)
Q Consensus        70 a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~--~~P~~~  147 (428)
                      .....+|......++++++++++.  .+.+..+                        +......+++.+++.  .+|+++
T Consensus       244 ~~~~~~~~~~~~~~~~~a~~~~~~--~i~f~~~------------------------d~~~~~~~~~~~~~~~~~~P~~v  297 (462)
T TIGR01130       244 DESLDPFEELRNRFLEAAKKFRGK--FVNFAVA------------------------DEEDFGRELEYFGLKAEKFPAVA  297 (462)
T ss_pred             cCCchHHHHHHHHHHHHHHHCCCC--eEEEEEe------------------------cHHHhHHHHHHcCCCccCCceEE
Confidence            334556788888888888888652  2444433                        222226677888887  699999


Q ss_pred             EEcCCCCCCCcccccchhhhhhcccCccccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCc---cc-CCCCCceecccc
Q 014225          148 VLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGY---LL-GHPPDEKVPVSS  223 (428)
Q Consensus       148 lid~~~~dG~i~~~~~~~~i~~~g~~~~p~t~~~~~~l~~~~~~~~~~~~~~~~~g~~~p~f---~l-~~~g~~~v~l~~  223 (428)
                      +++.   +|...+..          .....+.+.+..+..........   ......+.|.-   .+ ...|. .+.-.-
T Consensus       298 i~~~---~~~~~y~~----------~~~~~~~~~i~~fi~~~~~g~~~---~~~~se~~p~~~~~~v~~l~~~-~f~~~v  360 (462)
T TIGR01130       298 IQDL---EGNKKYPM----------DQEEFSSENLEAFVKDFLDGKLK---PYLKSEPIPEDDEGPVKVLVGK-NFDEIV  360 (462)
T ss_pred             EEeC---CcccccCC----------CcCCCCHHHHHHHHHHHhcCCCC---eeeccCCCCccCCCccEEeeCc-CHHHHh
Confidence            9998   66211110          00023333333332221110000   00011122221   11 23333 222111


Q ss_pred             -cCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcch
Q 014225          224 -LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI  302 (428)
Q Consensus       224 -~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~  302 (428)
                       -.++.++|+||++||++|+.+.|.+.++++.++..       ..++.++.|+++.+                       
T Consensus       361 ~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~-------~~~i~~~~id~~~n-----------------------  410 (462)
T TIGR01130       361 LDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDA-------ESDVVIAKMDATAN-----------------------  410 (462)
T ss_pred             ccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcC-------CCcEEEEEEECCCC-----------------------
Confidence             14789999999999999999999999999999862       12578888877643                       


Q ss_pred             hHHHHhcCcCccceEEEECCCCc
Q 014225          303 KELTKYFDVQGIPCLVIIGPEGK  325 (428)
Q Consensus       303 ~~~~~~~~v~~~P~~~lid~~G~  325 (428)
                       ++.. |++.++|+++++.++++
T Consensus       411 -~~~~-~~i~~~Pt~~~~~~~~~  431 (462)
T TIGR01130       411 -DVPP-FEVEGFPTIKFVPAGKK  431 (462)
T ss_pred             -ccCC-CCccccCEEEEEeCCCC
Confidence             1223 89999999999955544

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=99.11  E-value=1.8e-10  Score=95.38  Aligned_cols=76  Identities=21%  Similarity=0.399  Sum_probs=56.4

Q ss_pred             ccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHh
Q 014225           57 SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR  136 (428)
Q Consensus        57 ~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~  136 (428)
                      ...+||+|+|+|||+||++|+.+.|.+.+........   ..++.|.+|.+.+                       ...+
T Consensus        15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~---~~fv~v~vd~~~~-----------------------~~~~   68 (117)
T cd02959          15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELS---HNFVMVNLEDDEE-----------------------PKDE   68 (117)
T ss_pred             HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhc---CcEEEEEecCCCC-----------------------chhh
Confidence            3446899999999999999999999999977765432   3455566664422                       1223


Q ss_pred             hcCCCC--CceEEEEcCCCCCCCcccc
Q 014225          137 KFDIEG--IPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       137 ~~~v~~--~P~~~lid~~~~dG~i~~~  161 (428)
                      .|++.+  +|+++++++   +|+++.+
T Consensus        69 ~~~~~g~~vPt~~f~~~---~Gk~~~~   92 (117)
T cd02959          69 EFSPDGGYIPRILFLDP---SGDVHPE   92 (117)
T ss_pred             hcccCCCccceEEEECC---CCCCchh
Confidence            566665  999999999   9988764

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.11  E-value=3.5e-10  Score=91.31  Aligned_cols=74  Identities=26%  Similarity=0.447  Sum_probs=60.2

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      +++++|.||++||++|+.+.|.+.++.+.++..        .++.++.|+++.+                      ...+
T Consensus        18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~--------~~~~~~~id~~~~----------------------~~~~   67 (105)
T cd02998          18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANE--------DDVVIAKVDADEA----------------------NKDL   67 (105)
T ss_pred             CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCC--------CCEEEEEEECCCc----------------------chhh
Confidence            568999999999999999999999999998632        2577777777652                      1678


Q ss_pred             HHhcCcCccceEEEECCCCcEEec
Q 014225          306 TKYFDVQGIPCLVIIGPEGKTVTK  329 (428)
Q Consensus       306 ~~~~~v~~~P~~~lid~~G~i~~~  329 (428)
                      ++.|+|.++|++++++++|+....
T Consensus        68 ~~~~~i~~~P~~~~~~~~~~~~~~   91 (105)
T cd02998          68 AKKYGVSGFPTLKFFPKGSTEPVK   91 (105)
T ss_pred             HHhCCCCCcCEEEEEeCCCCCccc
Confidence            999999999999999777654443

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.10  E-value=6.6e-10  Score=89.52  Aligned_cols=65  Identities=23%  Similarity=0.460  Sum_probs=55.9

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      +++++|.||++||++|+.+.|.+.++++++...          +.++.++++..                       ..+
T Consensus        18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~----------~~~~~id~~~~-----------------------~~~   64 (103)
T cd03001          18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI----------VKVGAVDADVH-----------------------QSL   64 (103)
T ss_pred             CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC----------ceEEEEECcch-----------------------HHH
Confidence            467999999999999999999999999888643          78888877644                       678


Q ss_pred             HHhcCcCccceEEEECCC
Q 014225          306 TKYFDVQGIPCLVIIGPE  323 (428)
Q Consensus       306 ~~~~~v~~~P~~~lid~~  323 (428)
                      ++.|+|.++|++++++++
T Consensus        65 ~~~~~i~~~P~~~~~~~~   82 (103)
T cd03001          65 AQQYGVRGFPTIKVFGAG   82 (103)
T ss_pred             HHHCCCCccCEEEEECCC
Confidence            899999999999999544

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.10  E-value=3.6e-10  Score=91.19  Aligned_cols=73  Identities=18%  Similarity=0.379  Sum_probs=57.6

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      ++++++|.||++||++|+.+.|.+.++++++++.+ .+.++.++.+.+..                      ..+++.|+
T Consensus        16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~----------------------~~~~~~~~   72 (104)
T cd02997          16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDG-KGVLAAVDCTKPEH----------------------DALKEEYN   72 (104)
T ss_pred             hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCC-ceEEEEEECCCCcc----------------------HHHHHhCC
Confidence            46799999999999999999999999999997532 35565555543211                      67889999


Q ss_pred             CCCCceEEEEcCCCCCCCcc
Q 014225          140 IEGIPCLVVLQPYDDKDDAT  159 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~  159 (428)
                      +.++|+++++.    +|+++
T Consensus        73 i~~~Pt~~~~~----~g~~~   88 (104)
T cd02997          73 VKGFPTFKYFE----NGKFV   88 (104)
T ss_pred             CccccEEEEEe----CCCee
Confidence            99999988887    67654

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.09  E-value=1e-09  Score=90.34  Aligned_cols=64  Identities=17%  Similarity=0.268  Sum_probs=54.0

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      ++.++|+||++||++|+.+.|.|+++.+.+ +          .+.++.|++|..                       .++
T Consensus        22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~----------~i~~~~vd~d~~-----------------------~~l   67 (113)
T cd02975          22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS-D----------KLKLEIYDFDED-----------------------KEK   67 (113)
T ss_pred             CeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C----------ceEEEEEeCCcC-----------------------HHH
Confidence            355889999999999999999999998775 2          478888888754                       678


Q ss_pred             HHhcCcCccceEEEECCC
Q 014225          306 TKYFDVQGIPCLVIIGPE  323 (428)
Q Consensus       306 ~~~~~v~~~P~~~lid~~  323 (428)
                      ++.|+|.++||+++++.+
T Consensus        68 ~~~~~v~~vPt~~i~~~g   85 (113)
T cd02975          68 AEKYGVERVPTTIFLQDG   85 (113)
T ss_pred             HHHcCCCcCCEEEEEeCC
Confidence            999999999999999543

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.09  E-value=2.5e-10  Score=94.09  Aligned_cols=79  Identities=16%  Similarity=0.398  Sum_probs=62.6

Q ss_pred             CCCEEEEEEec-------CCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHH
Q 014225           60 EGKVTALYFSA-------NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKK  132 (428)
Q Consensus        60 ~gk~vlv~F~a-------~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~  132 (428)
                      +|++|+|+|||       +||++|+...|.|.+++++++++   +.++.|++|....          |     .+..  .
T Consensus        20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~---v~fv~Vdvd~~~~----------w-----~d~~--~   79 (119)
T cd02952          20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPED---CVFIYCDVGDRPY----------W-----RDPN--N   79 (119)
T ss_pred             CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCC---CEEEEEEcCCccc----------c-----cCcc--h
Confidence            57899999999       99999999999999999998743   7788888776531          1     0111  6


Q ss_pred             HHHhhcCCC-CCceEEEEcCCCCCCCcccc
Q 014225          133 ALNRKFDIE-GIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       133 ~l~~~~~v~-~~P~~~lid~~~~dG~i~~~  161 (428)
                      .+++.|++. ++||+++++.   .++++..
T Consensus        80 ~~~~~~~I~~~iPT~~~~~~---~~~l~~~  106 (119)
T cd02952          80 PFRTDPKLTTGVPTLLRWKT---PQRLVED  106 (119)
T ss_pred             hhHhccCcccCCCEEEEEcC---Cceecch
Confidence            788899998 9999999986   5555543

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.08  E-value=5.2e-10  Score=89.41  Aligned_cols=71  Identities=17%  Similarity=0.367  Sum_probs=59.6

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+|+++|.||++||++|+...|.+.++.+++.+.   +.++.|+.|..                        ..+.+.++
T Consensus        12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~---v~~~~id~d~~------------------------~~l~~~~~   64 (97)
T cd02949          12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGA---VHFVEIDIDED------------------------QEIAEAAG   64 (97)
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCc---eEEEEEECCCC------------------------HHHHHHCC
Confidence            4689999999999999999999999999998653   77777766543                        56788999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++|++++++    +|+++.+
T Consensus        65 v~~vPt~~i~~----~g~~v~~   82 (97)
T cd02949          65 IMGTPTVQFFK----DKELVKE   82 (97)
T ss_pred             CeeccEEEEEE----CCeEEEE
Confidence            99999999996    7877644

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.08  E-value=3.2e-10  Score=93.45  Aligned_cols=79  Identities=16%  Similarity=0.330  Sum_probs=62.9

Q ss_pred             CCcEEEEEEec-------cCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCcccccc
Q 014225          225 VGKTVGLYFSA-------RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF  297 (428)
Q Consensus       225 ~gk~vll~F~a-------~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~  297 (428)
                      +|++|+|+|||       +||++|+.+.|.+.++.+++++          ++.++.|.+|...                .
T Consensus        20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~----------~v~fv~Vdvd~~~----------------~   73 (119)
T cd02952          20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE----------DCVFIYCDVGDRP----------------Y   73 (119)
T ss_pred             CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC----------CCEEEEEEcCCcc----------------c
Confidence            57899999999       9999999999999999998864          3788888887542                1


Q ss_pred             CCcchhHHHHhcCcC-ccceEEEECCCCcEEec
Q 014225          298 GDPTIKELTKYFDVQ-GIPCLVIIGPEGKTVTK  329 (428)
Q Consensus       298 ~~d~~~~~~~~~~v~-~~P~~~lid~~G~i~~~  329 (428)
                      ..+...++...|+|. ++||+++++..++++..
T Consensus        74 w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l~~~  106 (119)
T cd02952          74 WRDPNNPFRTDPKLTTGVPTLLRWKTPQRLVED  106 (119)
T ss_pred             ccCcchhhHhccCcccCCCEEEEEcCCceecch
Confidence            112246888999998 99999999665566544

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.08  E-value=3.9e-10  Score=91.25  Aligned_cols=71  Identities=17%  Similarity=0.320  Sum_probs=61.5

Q ss_pred             CCCEEEEEEecCC--ChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhh
Q 014225           60 EGKVTALYFSANW--YPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK  137 (428)
Q Consensus        60 ~gk~vlv~F~a~w--C~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~  137 (428)
                      .|.+++|+||++|  ||+|+...|.|.+++++|.+.   +.++-|++|..                        ..++..
T Consensus        26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~---v~f~kVdid~~------------------------~~la~~   78 (111)
T cd02965          26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR---FRAAVVGRADE------------------------QALAAR   78 (111)
T ss_pred             CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc---EEEEEEECCCC------------------------HHHHHH
Confidence            5789999999997  999999999999999999765   66777766544                        789999


Q ss_pred             cCCCCCceEEEEcCCCCCCCcccc
Q 014225          138 FDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       138 ~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      |+|.++||++++.    +|+++..
T Consensus        79 f~V~sIPTli~fk----dGk~v~~   98 (111)
T cd02965          79 FGVLRTPALLFFR----DGRYVGV   98 (111)
T ss_pred             cCCCcCCEEEEEE----CCEEEEE
Confidence            9999999999999    7887755

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=99.08  E-value=6.4e-10  Score=98.66  Aligned_cols=71  Identities=15%  Similarity=0.230  Sum_probs=59.8

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      +++|||.||++||++|+.+.|.|.+++.+|.           .+.++-|+++.                        ..+
T Consensus        83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-----------~vkF~kVd~d~------------------------~~l  127 (175)
T cd02987          83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-----------AVKFCKIRASA------------------------TGA  127 (175)
T ss_pred             CcEEEEEEECCCCchHHHHHHHHHHHHHHCC-----------CeEEEEEeccc------------------------hhh
Confidence            4599999999999999999999999998874           46777776662                        257


Q ss_pred             HHhcCcCccceEEEECCCCcEEecccc
Q 014225          306 TKYFDVQGIPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       306 ~~~~~v~~~P~~~lid~~G~i~~~~~~  332 (428)
                      +..|+|.++||++++ ++|+++.+..+
T Consensus       128 ~~~f~v~~vPTllly-k~G~~v~~~vG  153 (175)
T cd02987         128 SDEFDTDALPALLVY-KGGELIGNFVR  153 (175)
T ss_pred             HHhCCCCCCCEEEEE-ECCEEEEEEec
Confidence            888999999999999 89999987543

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=99.07  E-value=4.6e-10  Score=92.03  Aligned_cols=95  Identities=21%  Similarity=0.366  Sum_probs=64.7

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      +||+++|.||++||++|+.+.+.+.+..+-......++.++.++++.......++....+.   .. -......+.+.|+
T Consensus         4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~l~~~~~   79 (112)
T PF13098_consen    4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQ---KN-VRLSNKELAQRYG   79 (112)
T ss_dssp             TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCH---SS-CHHHHHHHHHHTT
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccc---hh-hhHHHHHHHHHcC
Confidence            5899999999999999999999888654422221113889999888776555555443321   11 1223378999999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++|+++++|+   +|+++..
T Consensus        80 v~gtPt~~~~d~---~G~~v~~   98 (112)
T PF13098_consen   80 VNGTPTIVFLDK---DGKIVYR   98 (112)
T ss_dssp             --SSSEEEECTT---TSCEEEE
T ss_pred             CCccCEEEEEcC---CCCEEEE
Confidence            999999999999   9987743

...

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.06  E-value=6.3e-10  Score=88.69  Aligned_cols=70  Identities=21%  Similarity=0.421  Sum_probs=56.8

Q ss_pred             CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225           61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI  140 (428)
Q Consensus        61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v  140 (428)
                      +++++|+||++||++|+.+.|.|.++.+++..   ++.++.|+.+..                        ..+++.|++
T Consensus        14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~---~i~~~~vd~~~~------------------------~~~~~~~~i   66 (97)
T cd02984          14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP---SVLFLSIEAEEL------------------------PEISEKFEI   66 (97)
T ss_pred             CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC---ceEEEEEccccC------------------------HHHHHhcCC
Confidence            68999999999999999999999999999722   366666543221                        678899999


Q ss_pred             CCCceEEEEcCCCCCCCcccc
Q 014225          141 EGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       141 ~~~P~~~lid~~~~dG~i~~~  161 (428)
                      .++|+++++.    +|+++.+
T Consensus        67 ~~~Pt~~~~~----~g~~~~~   83 (97)
T cd02984          67 TAVPTFVFFR----NGTIVDR   83 (97)
T ss_pred             ccccEEEEEE----CCEEEEE
Confidence            9999999996    7877644

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=1.9e-10  Score=115.22  Aligned_cols=127  Identities=21%  Similarity=0.378  Sum_probs=82.4

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      +++++|.||++||++|.++.|.+.++.+.+++.          +.+..|.++  .                     ...+
T Consensus        47 ~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~----------~~~~~vd~~--~---------------------~~~~   93 (383)
T KOG0191|consen   47 DSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK----------VKIGAVDCD--E---------------------HKDL   93 (383)
T ss_pred             CCceEEEEECCCCcchhhhchHHHHHHHHhcCc----------eEEEEeCch--h---------------------hHHH
Confidence            467999999999999999999999999988754          445544444  3                     3889


Q ss_pred             HHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhc----CCCC-cccccccccee--
Q 014225          306 TKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKN----LPRS-EFHIGHRHELN--  378 (428)
Q Consensus       306 ~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~----~~~~-~~~~~~~~~~~--  378 (428)
                      ++.|+|.++||+.++.++..++...+..               ..+.+...+...+..    .... +..... +...  
T Consensus        94 ~~~y~i~gfPtl~~f~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~~~  157 (383)
T KOG0191|consen   94 CEKYGIQGFPTLKVFRPGKKPIDYSGPR---------------NAESLAEFLIKELEPSVKKLVEGEVFELTK-DNFDET  157 (383)
T ss_pred             HHhcCCccCcEEEEEcCCCceeeccCcc---------------cHHHHHHHHHHhhccccccccCCceEEccc-cchhhh
Confidence            9999999999999996664555554311               123333333333322    2222 111111 1110  


Q ss_pred             ----eeeccCCCCCcccccccCCCCce
Q 014225          379 ----LVSEGTGGGPFICCDCDEQGSGW  401 (428)
Q Consensus       379 ----~~~~~~~~~~~~c~~C~~~g~~~  401 (428)
                          --.|...+.+|||+||+++.+.|
T Consensus       158 ~~~~~~~~lv~f~aPwc~~ck~l~~~~  184 (383)
T KOG0191|consen  158 VKDSDADWLVEFYAPWCGHCKKLAPEW  184 (383)
T ss_pred             hhccCcceEEEEeccccHHhhhcChHH
Confidence                01134567899999999998777

>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=2.7e-09  Score=89.42  Aligned_cols=115  Identities=15%  Similarity=0.162  Sum_probs=88.2

Q ss_pred             CCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC------
Q 014225          206 DRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR------  278 (428)
Q Consensus       206 ~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~------  278 (428)
                      .-+|.+ +.+|+ .+++++++||++||.-.|+.|+.-. ....|+.||++|+++         ++.|+++.+++      
T Consensus         5 ~yd~~~~~~~G~-~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~---------Gf~VLgFPcNQF~~QEP   73 (162)
T COG0386           5 IYDFSVKDIDGE-PVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDK---------GFEVLGFPCNQFGGQEP   73 (162)
T ss_pred             cccceeeccCCC-CccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhC---------CcEEEeccccccccCCC
Confidence            347888 99999 9999999999999999999998877 446689999999988         89999999963      


Q ss_pred             -CHHHHHHHHhcCCccccccCCc------chh----HHHHhcC-------cCccceEEEECCCCcEEeccc
Q 014225          279 -DQTSFESYFGTMPWLALPFGDP------TIK----ELTKYFD-------VQGIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       279 -~~~~~~~~~~~~~~~~~~~~~d------~~~----~~~~~~~-------v~~~P~~~lid~~G~i~~~~~  331 (428)
                       +.+++++|+...-..+||+..-      ...    -|...-.       |+.-=+-||||++|+|+.|++
T Consensus        74 g~~eEI~~fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~  144 (162)
T COG0386          74 GSDEEIAKFCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFS  144 (162)
T ss_pred             CCHHHHHHHHHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeC
Confidence             5678999999766688887321      111    2222221       111116799999999999975

>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=6.6e-10  Score=97.26  Aligned_cols=121  Identities=22%  Similarity=0.322  Sum_probs=96.7

Q ss_pred             cccccccccCc-cccC-CCC---EEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCC-
Q 014225           35 SSLLASKDRDY-LLNQ-HGT---QVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED-  107 (428)
Q Consensus        35 ~~~~g~~~pdf-l~~~-~G~---~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~-  107 (428)
                      .+++|..+||| +... .|.   +++++++.||.++|+|| +..-+-|..++..+++.|++|+++|  +++|+||+|.. 
T Consensus         2 ~~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g--~eVigvS~Ds~f   79 (194)
T COG0450           2 MSLIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRG--VEVIGVSTDSVF   79 (194)
T ss_pred             ccccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcC--CEEEEEecCcHH
Confidence            35789999999 7666 674   89999999999999999 8888899999999999999999998  99999999975 


Q ss_pred             -hHHHHHHHhcCC-C--ceeccCChHHHHHHHhhcCCC------CCceEEEEcCCCCCCCcccc
Q 014225          108 -LNAFNNYRACMP-W--LAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       108 -~~~~~~~~~~~~-~--~~~~~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~dG~i~~~  161 (428)
                       +..|.+..++.+ .  ..+|. -.|.+.++++.||+-      .+=.++|||+   +|.+...
T Consensus        80 sH~aW~~~~~~~~gi~~i~~Pm-iaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp---~g~ir~~  139 (194)
T COG0450          80 SHKAWKATIREAGGIGKIKFPM-IADPKGEIARAYGVLHPEEGLALRGTFIIDP---DGVIRHI  139 (194)
T ss_pred             HHHHHHhcHHhcCCccceecce-EEcCchhHHHHcCCcccCCCcceeEEEEECC---CCeEEEE
Confidence             466777655433 2  34443 223338999999984      3457999999   9988654

>PTZ00051 thioredoxin; Provisional

Probab=99.05  E-value=6.1e-10  Score=88.97  Aligned_cols=70  Identities=20%  Similarity=0.360  Sum_probs=56.3

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+++++|+||++||++|+.+.|.+.++++++.+    +.++.|+.+..                        ..+++.|+
T Consensus        17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~----~~~~~vd~~~~------------------------~~~~~~~~   68 (98)
T PTZ00051         17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK----MVFVKVDVDEL------------------------SEVAEKEN   68 (98)
T ss_pred             cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC----cEEEEEECcch------------------------HHHHHHCC
Confidence            468999999999999999999999999987642    55665544321                        67889999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++|+++++.    +|+++..
T Consensus        69 v~~~Pt~~~~~----~g~~~~~   86 (98)
T PTZ00051         69 ITSMPTFKVFK----NGSVVDT   86 (98)
T ss_pred             CceeeEEEEEe----CCeEEEE
Confidence            99999988885    7877754

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.05  E-value=5.7e-10  Score=89.55  Aligned_cols=67  Identities=22%  Similarity=0.434  Sum_probs=56.1

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      ++++++|.||++||++|+.+.|.++++++.++..+ ++.++.++.|..                        ..+++.|+
T Consensus        12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~------------------------~~~~~~~~   66 (102)
T TIGR01126        12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDP-DIVLAKVDATAE------------------------KDLASRFG   66 (102)
T ss_pred             cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCC-ceEEEEEEccch------------------------HHHHHhCC
Confidence            68999999999999999999999999999997642 366655544322                        67889999


Q ss_pred             CCCCceEEEEcC
Q 014225          140 IEGIPCLVVLQP  151 (428)
Q Consensus       140 v~~~P~~~lid~  151 (428)
                      +.++|+++++++
T Consensus        67 i~~~P~~~~~~~   78 (102)
T TIGR01126        67 VSGFPTIKFFPK   78 (102)
T ss_pred             CCcCCEEEEecC
Confidence            999999999997

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=5.9e-10  Score=100.26  Aligned_cols=96  Identities=22%  Similarity=0.384  Sum_probs=73.9

Q ss_pred             ccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCc
Q 014225          221 VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP  300 (428)
Q Consensus       221 l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d  300 (428)
                      ++..-+|.|+|+|+|.||+||+...|.+.++..+|.           +..++-|.+|.-                     
T Consensus        16 ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp-----------~aVFlkVdVd~c---------------------   63 (288)
T KOG0908|consen   16 LSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP-----------GAVFLKVDVDEC---------------------   63 (288)
T ss_pred             hhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc-----------ccEEEEEeHHHh---------------------
Confidence            333446899999999999999999999999999986           346777776633                     


Q ss_pred             chhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhcCCC
Q 014225          301 TIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPR  366 (428)
Q Consensus       301 ~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~~~  366 (428)
                        ...+..+||+++||++++ .+|+-+.+       .-|+++        ..|++.+.+.+...+.
T Consensus        64 --~~taa~~gV~amPTFiff-~ng~kid~-------~qGAd~--------~gLe~kv~~~~stsaa  111 (288)
T KOG0908|consen   64 --RGTAATNGVNAMPTFIFF-RNGVKIDQ-------IQGADA--------SGLEEKVAKYASTSAA  111 (288)
T ss_pred             --hchhhhcCcccCceEEEE-ecCeEeee-------ecCCCH--------HHHHHHHHHHhccCcc
Confidence              567888999999999999 88877665       233333        6778888877765443

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=99.04  E-value=1.6e-09  Score=83.38  Aligned_cols=62  Identities=15%  Similarity=0.312  Sum_probs=51.4

Q ss_pred             EEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHh
Q 014225          229 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKY  308 (428)
Q Consensus       229 vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  308 (428)
                      .+..||++||++|+...|.|+++.++++.          .+.++.|+.+.+                       .++.+.
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~----------~~~~~~vd~~~~-----------------------~~~~~~   48 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD----------AVEVEYINVMEN-----------------------PQKAME   48 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcC----------ceEEEEEeCccC-----------------------HHHHHH
Confidence            46789999999999999999999988864          378888887755                       567788


Q ss_pred             cCcCccceEEEECCCCcE
Q 014225          309 FDVQGIPCLVIIGPEGKT  326 (428)
Q Consensus       309 ~~v~~~P~~~lid~~G~i  326 (428)
                      |++.++|++++   +|+.
T Consensus        49 ~~v~~vPt~~~---~g~~   63 (82)
T TIGR00411        49 YGIMAVPAIVI---NGDV   63 (82)
T ss_pred             cCCccCCEEEE---CCEE
Confidence            99999999975   6664

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.03  E-value=1.1e-09  Score=87.25  Aligned_cols=73  Identities=23%  Similarity=0.438  Sum_probs=60.1

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      +++++|.||++||++|+.+.+.+.++.+.++..        .++.++.|+++.+                       ..+
T Consensus        15 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~-----------------------~~~   63 (101)
T cd02961          15 SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGD--------GKVVVAKVDCTAN-----------------------NDL   63 (101)
T ss_pred             CCcEEEEEECCCCHHHHhhhHHHHHHHHHhccC--------CceEEEEeeccch-----------------------HHH
Confidence            458999999999999999999999999988511        2578888877643                       688


Q ss_pred             HHhcCcCccceEEEECCCCcEEec
Q 014225          306 TKYFDVQGIPCLVIIGPEGKTVTK  329 (428)
Q Consensus       306 ~~~~~v~~~P~~~lid~~G~i~~~  329 (428)
                      ++.|+|.++|++++++++|+...+
T Consensus        64 ~~~~~i~~~Pt~~~~~~~~~~~~~   87 (101)
T cd02961          64 CSEYGVRGYPTIKLFPNGSKEPVK   87 (101)
T ss_pred             HHhCCCCCCCEEEEEcCCCccccc
Confidence            999999999999999877654444

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.03  E-value=1.1e-09  Score=90.04  Aligned_cols=70  Identities=11%  Similarity=0.164  Sum_probs=59.0

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      ++++|+|+||++||++|+.+.|.|.++.+++.+    +.++-|++|..                        ..+++.|+
T Consensus        21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~----i~f~~Vd~~~~------------------------~~l~~~~~   72 (113)
T cd02989          21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE----TKFIKVNAEKA------------------------PFLVEKLN   72 (113)
T ss_pred             CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC----CEEEEEEcccC------------------------HHHHHHCC
Confidence            357999999999999999999999999998743    66776655543                        67899999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++|+++++.    +|+.+.+
T Consensus        73 v~~vPt~l~fk----~G~~v~~   90 (113)
T cd02989          73 IKVLPTVILFK----NGKTVDR   90 (113)
T ss_pred             CccCCEEEEEE----CCEEEEE
Confidence            99999999999    6877754

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.02  E-value=1.5e-09  Score=90.51  Aligned_cols=79  Identities=18%  Similarity=0.442  Sum_probs=57.3

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCC-cchhH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGD-PTIKE  304 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~-d~~~~  304 (428)
                      |+.++|+|+++|||+|+.+.|.|.++.++.            ++.++.|++|.+..             ..... ....+
T Consensus        23 ~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~------------~~~~y~vdvd~~~~-------------~~~~~~~~~~~   77 (122)
T TIGR01295        23 KETATFFIGRKTCPYCRKFSGTLSGVVAQT------------KAPIYYIDSENNGS-------------FEMSSLNDLTA   77 (122)
T ss_pred             CCcEEEEEECCCChhHHHHhHHHHHHHHhc------------CCcEEEEECCCccC-------------cCcccHHHHHH
Confidence            577899999999999999999999998873            35689999985420             00000 00124


Q ss_pred             HHHhc----CcCccceEEEECCCCcEEecc
Q 014225          305 LTKYF----DVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       305 ~~~~~----~v~~~P~~~lid~~G~i~~~~  330 (428)
                      +.+.|    +|.++||++++ ++|+.+.+.
T Consensus        78 ~~~~~~i~~~i~~~PT~v~~-k~Gk~v~~~  106 (122)
T TIGR01295        78 FRSRFGIPTSFMGTPTFVHI-TDGKQVSVR  106 (122)
T ss_pred             HHHHcCCcccCCCCCEEEEE-eCCeEEEEE
Confidence            44444    46679999999 999998874

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.02  E-value=1.3e-09  Score=87.55  Aligned_cols=69  Identities=26%  Similarity=0.631  Sum_probs=59.2

Q ss_pred             CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225           61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI  140 (428)
Q Consensus        61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v  140 (428)
                      +++++|.||++||++|+.+.|.|.++++++.+ +  +.++.|+.+..                        ..+++.|++
T Consensus        17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~--v~~~~vd~~~~------------------------~~l~~~~~v   69 (103)
T PF00085_consen   17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-N--VKFAKVDCDEN------------------------KELCKKYGV   69 (103)
T ss_dssp             SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-T--SEEEEEETTTS------------------------HHHHHHTTC
T ss_pred             CCCEEEEEeCCCCCccccccceeccccccccc-c--cccchhhhhcc------------------------chhhhccCC
Confidence            68999999999999999999999999999987 3  77777655433                        789999999


Q ss_pred             CCCceEEEEcCCCCCCCccc
Q 014225          141 EGIPCLVVLQPYDDKDDATL  160 (428)
Q Consensus       141 ~~~P~~~lid~~~~dG~i~~  160 (428)
                      .++|+++++.    +|+...
T Consensus        70 ~~~Pt~~~~~----~g~~~~   85 (103)
T PF00085_consen   70 KSVPTIIFFK----NGKEVK   85 (103)
T ss_dssp             SSSSEEEEEE----TTEEEE
T ss_pred             CCCCEEEEEE----CCcEEE
Confidence            9999999998    575553

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.00  E-value=9.9e-10  Score=100.79  Aligned_cols=69  Identities=19%  Similarity=0.351  Sum_probs=56.9

Q ss_pred             CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225           61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI  140 (428)
Q Consensus        61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v  140 (428)
                      +++++|+|||+||++|+.+.|.+.++++++++.   +.+..|+.+.  .                      ..+++.|+|
T Consensus        52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~---v~~~~VD~~~--~----------------------~~l~~~~~I  104 (224)
T PTZ00443         52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ---VNVADLDATR--A----------------------LNLAKRFAI  104 (224)
T ss_pred             CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC---eEEEEecCcc--c----------------------HHHHHHcCC
Confidence            579999999999999999999999999999753   6665553332  2                      678899999


Q ss_pred             CCCceEEEEcCCCCCCCccc
Q 014225          141 EGIPCLVVLQPYDDKDDATL  160 (428)
Q Consensus       141 ~~~P~~~lid~~~~dG~i~~  160 (428)
                      .++|++++++    +|+++.
T Consensus       105 ~~~PTl~~f~----~G~~v~  120 (224)
T PTZ00443        105 KGYPTLLLFD----KGKMYQ  120 (224)
T ss_pred             CcCCEEEEEE----CCEEEE
Confidence            9999999999    676553

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.00  E-value=1e-09  Score=90.68  Aligned_cols=70  Identities=13%  Similarity=0.251  Sum_probs=57.6

Q ss_pred             CCEEEEEEecCCChh--hh--hhHHHHHHHHHHHh-cCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHH
Q 014225           61 GKVTALYFSANWYPP--CG--NFTGVLVDVYEELR-NNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN  135 (428)
Q Consensus        61 gk~vlv~F~a~wC~~--C~--~~~p~l~~l~~~~~-~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~  135 (428)
                      ..++|++||++||+|  |+  ...|.+.+++.++- +.+  +.++-|++|..                        ..++
T Consensus        27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~--v~~~kVD~d~~------------------------~~La   80 (120)
T cd03065          27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKG--IGFGLVDSKKD------------------------AKVA   80 (120)
T ss_pred             CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCC--CEEEEEeCCCC------------------------HHHH
Confidence            359999999999988  99  77888999888872 223  77887776655                        7899


Q ss_pred             hhcCCCCCceEEEEcCCCCCCCccc
Q 014225          136 RKFDIEGIPCLVVLQPYDDKDDATL  160 (428)
Q Consensus       136 ~~~~v~~~P~~~lid~~~~dG~i~~  160 (428)
                      +.|+|.++||++++.    ||+++.
T Consensus        81 ~~~~I~~iPTl~lfk----~G~~v~  101 (120)
T cd03065          81 KKLGLDEEDSIYVFK----DDEVIE  101 (120)
T ss_pred             HHcCCccccEEEEEE----CCEEEE
Confidence            999999999999998    787653

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=98.99  E-value=1.1e-09  Score=90.05  Aligned_cols=68  Identities=18%  Similarity=0.308  Sum_probs=55.7

Q ss_pred             CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225           61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI  140 (428)
Q Consensus        61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v  140 (428)
                      +++++|+||++||++|+.+.|.|+++++++.+    +.++-|+.|                        . ..+++.|++
T Consensus        24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~----v~f~~vd~~------------------------~-~~l~~~~~i   74 (113)
T cd02957          24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYPE----TKFVKINAE------------------------K-AFLVNYLDI   74 (113)
T ss_pred             CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC----cEEEEEEch------------------------h-hHHHHhcCC
Confidence            58999999999999999999999999999853    555555332                        1 177889999


Q ss_pred             CCCceEEEEcCCCCCCCcccc
Q 014225          141 EGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       141 ~~~P~~~lid~~~~dG~i~~~  161 (428)
                      .++|+++++.    +|+.+.+
T Consensus        75 ~~~Pt~~~f~----~G~~v~~   91 (113)
T cd02957          75 KVLPTLLVYK----NGELIDN   91 (113)
T ss_pred             CcCCEEEEEE----CCEEEEE
Confidence            9999999998    7887755

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=98.98  E-value=2.3e-09  Score=86.27  Aligned_cols=64  Identities=22%  Similarity=0.400  Sum_probs=54.5

Q ss_pred             CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225           61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI  140 (428)
Q Consensus        61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v  140 (428)
                      +++++|.||++||++|+.+.|.+.+++++++..   +.++.++.|..                        ..+++.|++
T Consensus        18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~---~~~~~id~~~~------------------------~~~~~~~~i   70 (103)
T cd03001          18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI---VKVGAVDADVH------------------------QSLAQQYGV   70 (103)
T ss_pred             CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---ceEEEEECcch------------------------HHHHHHCCC
Confidence            567999999999999999999999999998754   67777655432                        678899999


Q ss_pred             CCCceEEEEcC
Q 014225          141 EGIPCLVVLQP  151 (428)
Q Consensus       141 ~~~P~~~lid~  151 (428)
                      .++|+++++++
T Consensus        71 ~~~P~~~~~~~   81 (103)
T cd03001          71 RGFPTIKVFGA   81 (103)
T ss_pred             CccCEEEEECC
Confidence            99999999985

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=98.97  E-value=5.2e-09  Score=87.16  Aligned_cols=82  Identities=21%  Similarity=0.130  Sum_probs=57.0

Q ss_pred             CCCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHH
Q 014225           59 LEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN  135 (428)
Q Consensus        59 ~~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~  135 (428)
                      -++|+|+|+|+++||++|+.+.+..   .++.+.+.+.   +.+|.|+.+...+..+.++                ....
T Consensus        13 ~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~---fv~VkvD~~~~~~~~~~~~----------------~~~~   73 (124)
T cd02955          13 REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNEN---FVPIKVDREERPDVDKIYM----------------NAAQ   73 (124)
T ss_pred             HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCC---EEEEEEeCCcCcHHHHHHH----------------HHHH
Confidence            3689999999999999999987632   2455555443   7777666655433111111                2233


Q ss_pred             hhcCCCCCceEEEEcCCCCCCCccccc
Q 014225          136 RKFDIEGIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       136 ~~~~v~~~P~~~lid~~~~dG~i~~~~  162 (428)
                      ..|++.++|+++|+++   +|++++..
T Consensus        74 ~~~~~~G~Pt~vfl~~---~G~~~~~~   97 (124)
T cd02955          74 AMTGQGGWPLNVFLTP---DLKPFFGG   97 (124)
T ss_pred             HhcCCCCCCEEEEECC---CCCEEeee
Confidence            3679999999999999   99998764

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=98.96  E-value=3.3e-09  Score=85.52  Aligned_cols=67  Identities=27%  Similarity=0.446  Sum_probs=54.9

Q ss_pred             CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225           61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI  140 (428)
Q Consensus        61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v  140 (428)
                      +++++|.||++||++|+.+.|.+.++++.++..+ ++.++.++.+.. .                      ..+++.|++
T Consensus        18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~-~~~~~~id~~~~-~----------------------~~~~~~~~i   73 (105)
T cd02998          18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANED-DVVIAKVDADEA-N----------------------KDLAKKYGV   73 (105)
T ss_pred             CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCC-CEEEEEEECCCc-c----------------------hhhHHhCCC
Confidence            5799999999999999999999999999987321 366666554431 1                      678889999


Q ss_pred             CCCceEEEEcC
Q 014225          141 EGIPCLVVLQP  151 (428)
Q Consensus       141 ~~~P~~~lid~  151 (428)
                      .++|+++++++
T Consensus        74 ~~~P~~~~~~~   84 (105)
T cd02998          74 SGFPTLKFFPK   84 (105)
T ss_pred             CCcCEEEEEeC
Confidence            99999999996

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=98.95  E-value=2.6e-09  Score=96.04  Aligned_cols=69  Identities=13%  Similarity=0.154  Sum_probs=58.0

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      +++|||.||++||++|+.+.|.|.+++.+|.           .+.++-|.++.                          .
T Consensus       102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-----------~vkFvkI~ad~--------------------------~  144 (192)
T cd02988         102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFP-----------DTKFVKIISTQ--------------------------C  144 (192)
T ss_pred             CCEEEEEEECCCCchHHHHHHHHHHHHHHCC-----------CCEEEEEEhHH--------------------------h
Confidence            4689999999999999999999999999975           35777776651                          2


Q ss_pred             HHhcCcCccceEEEECCCCcEEecccc
Q 014225          306 TKYFDVQGIPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       306 ~~~~~v~~~P~~~lid~~G~i~~~~~~  332 (428)
                      ...|++.++||++++ ++|+++.+..+
T Consensus       145 ~~~~~i~~lPTlliy-k~G~~v~~ivG  170 (192)
T cd02988         145 IPNYPDKNLPTILVY-RNGDIVKQFIG  170 (192)
T ss_pred             HhhCCCCCCCEEEEE-ECCEEEEEEeC
Confidence            467999999999999 99999988544

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>TIGR01068 thioredoxin thioredoxin

Probab=98.95  E-value=3.4e-09  Score=84.68  Aligned_cols=68  Identities=24%  Similarity=0.480  Sum_probs=57.2

Q ss_pred             CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225           61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI  140 (428)
Q Consensus        61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v  140 (428)
                      +++++|.||++||++|+...|.++++.+++.+.   +.++.|+.|..                        ..+++.|++
T Consensus        14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~------------------------~~~~~~~~v   66 (101)
T TIGR01068        14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEGK---VKFVKLNVDEN------------------------PDIAAKYGI   66 (101)
T ss_pred             CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCC---eEEEEEECCCC------------------------HHHHHHcCC
Confidence            579999999999999999999999999888643   77887765543                        567888999


Q ss_pred             CCCceEEEEcCCCCCCCcc
Q 014225          141 EGIPCLVVLQPYDDKDDAT  159 (428)
Q Consensus       141 ~~~P~~~lid~~~~dG~i~  159 (428)
                      .++|+++++.    +|+++
T Consensus        67 ~~~P~~~~~~----~g~~~   81 (101)
T TIGR01068        67 RSIPTLLLFK----NGKEV   81 (101)
T ss_pred             CcCCEEEEEe----CCcEe
Confidence            9999999996    67654

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=98.94  E-value=3.5e-09  Score=106.69  Aligned_cols=70  Identities=17%  Similarity=0.323  Sum_probs=58.3

Q ss_pred             cCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchh
Q 014225          224 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK  303 (428)
Q Consensus       224 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~  303 (428)
                      ..+++|||+|||+||++|+.+.|.|++++++|++.         ++.++.|++|.+.                     ..
T Consensus       369 ~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~---------~v~~~kVdvD~~~---------------------~~  418 (463)
T TIGR00424       369 ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS---------GVKVAKFRADGDQ---------------------KE  418 (463)
T ss_pred             cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC---------CcEEEEEECCCCc---------------------cH
Confidence            46789999999999999999999999999999754         5888889888652                     12


Q ss_pred             HHHHhcCcCccceEEEECCCC
Q 014225          304 ELTKYFDVQGIPCLVIIGPEG  324 (428)
Q Consensus       304 ~~~~~~~v~~~P~~~lid~~G  324 (428)
                      ...+.|+|.++||++++ ++|
T Consensus       419 ~~~~~~~I~~~PTii~F-k~g  438 (463)
T TIGR00424       419 FAKQELQLGSFPTILFF-PKH  438 (463)
T ss_pred             HHHHHcCCCccceEEEE-ECC
Confidence            33468999999999999 444

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=98.93  E-value=3.8e-09  Score=88.04  Aligned_cols=80  Identities=18%  Similarity=0.375  Sum_probs=57.9

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .|+.++|+|+++|||+|+.+.|.|.++.++.   +  ..+..|++|.+..             ....+.+....+.+.|+
T Consensus        22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~---~--~~~y~vdvd~~~~-------------~~~~~~~~~~~~~~~~~   83 (122)
T TIGR01295        22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQT---K--APIYYIDSENNGS-------------FEMSSLNDLTAFRSRFG   83 (122)
T ss_pred             cCCcEEEEEECCCChhHHHHhHHHHHHHHhc---C--CcEEEEECCCccC-------------cCcccHHHHHHHHHHcC
Confidence            4678999999999999999999999998872   2  6688888886531             00111111245556654


Q ss_pred             ----CCCCceEEEEcCCCCCCCcccc
Q 014225          140 ----IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 ----v~~~P~~~lid~~~~dG~i~~~  161 (428)
                          +.++|+++++.    +|+.+.+
T Consensus        84 i~~~i~~~PT~v~~k----~Gk~v~~  105 (122)
T TIGR01295        84 IPTSFMGTPTFVHIT----DGKQVSV  105 (122)
T ss_pred             CcccCCCCCEEEEEe----CCeEEEE
Confidence                55699999999    7987755

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=8e-09  Score=88.07  Aligned_cols=119  Identities=18%  Similarity=0.205  Sum_probs=95.0

Q ss_pred             ccCCCCccc----CCCCCceecccccCCcEEEEEEec-cCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC
Q 014225          203 TNHDRGYLL----GHPPDEKVPVSSLVGKTVGLYFSA-RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD  277 (428)
Q Consensus       203 g~~~p~f~l----~~~g~~~v~l~~~~gk~vll~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d  277 (428)
                      ..++|+|.-    |..-+ .++|++++||+|+++||. .+.-.|..+.-.+.+.+.+|+..         +-+|+++|+|
T Consensus         7 ~~p~p~fk~~aVVdG~f~-e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~---------n~eVig~S~D   76 (196)
T KOG0852|consen    7 FKPAPDFKGTAVVDGEFK-EIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKL---------NTEVLGISTD   76 (196)
T ss_pred             CCCCCCcceeEEEcCcce-EEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhc---------CCeEEEEecc
Confidence            456677753    44445 899999999999999994 67778999999999999999987         8999999999


Q ss_pred             C--CHHHHHHHHhcCCc---cccccCCcchhHHHHhcCc------CccceEEEECCCCcEEeccc
Q 014225          278 R--DQTSFESYFGTMPW---LALPFGDPTIKELTKYFDV------QGIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       278 ~--~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~v------~~~P~~~lid~~G~i~~~~~  331 (428)
                      .  +.-+|...-++.+.   +++|++.|.+.++++.|||      -.+..++|||++|.++....
T Consensus        77 S~fshlAW~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~  141 (196)
T KOG0852|consen   77 SVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQITI  141 (196)
T ss_pred             chhhhhhHhcCchhhCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEeee
Confidence            5  23345554444443   5699999999999999998      24567999999998887543

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=98.90  E-value=6.4e-09  Score=83.75  Aligned_cols=67  Identities=21%  Similarity=0.463  Sum_probs=54.2

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      +++++|+||++||++|+.+.|.+.++.+.+++.        .++.++.|+++.                        .++
T Consensus        18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~--------~~~~~~~id~~~------------------------~~~   65 (104)
T cd02995          18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGD--------DNVVIAKMDATA------------------------NDV   65 (104)
T ss_pred             CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC--------CCEEEEEEeCcc------------------------hhh
Confidence            578999999999999999999999999998752        257777776653                        245


Q ss_pred             HHhcCcCccceEEEECCCC
Q 014225          306 TKYFDVQGIPCLVIIGPEG  324 (428)
Q Consensus       306 ~~~~~v~~~P~~~lid~~G  324 (428)
                      ...+++.++|+++++.+++
T Consensus        66 ~~~~~~~~~Pt~~~~~~~~   84 (104)
T cd02995          66 PSEFVVDGFPTILFFPAGD   84 (104)
T ss_pred             hhhccCCCCCEEEEEcCCC
Confidence            6778899999999995444

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=98.90  E-value=5.8e-09  Score=85.79  Aligned_cols=63  Identities=21%  Similarity=0.278  Sum_probs=53.2

Q ss_pred             CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225           61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI  140 (428)
Q Consensus        61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v  140 (428)
                      ++.++|+||++||++|+...|.|.++.+.+ +.   +.+..|++|..                        ..+++.|++
T Consensus        22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~---i~~~~vd~d~~------------------------~~l~~~~~v   73 (113)
T cd02975          22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS-DK---LKLEIYDFDED------------------------KEKAEKYGV   73 (113)
T ss_pred             CeEEEEEeCCCCCCChHHHHHHHHHHHHhc-Cc---eEEEEEeCCcC------------------------HHHHHHcCC
Confidence            457899999999999999999999998876 32   77777766643                        678899999


Q ss_pred             CCCceEEEEcC
Q 014225          141 EGIPCLVVLQP  151 (428)
Q Consensus       141 ~~~P~~~lid~  151 (428)
                      .++|++++++.
T Consensus        74 ~~vPt~~i~~~   84 (113)
T cd02975          74 ERVPTTIFLQD   84 (113)
T ss_pred             CcCCEEEEEeC
Confidence            99999999984

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.89  E-value=9e-09  Score=81.82  Aligned_cols=67  Identities=18%  Similarity=0.375  Sum_probs=55.6

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      ++++++|.||++||++|+...|.+.++++.++.. .++.++.|+.+..                        ..+++.|+
T Consensus        14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~------------------------~~~~~~~~   68 (101)
T cd02961          14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGD-GKVVVAKVDCTAN------------------------NDLCSEYG   68 (101)
T ss_pred             CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccC-CceEEEEeeccch------------------------HHHHHhCC
Confidence            4569999999999999999999999999998521 1377777655432                        68899999


Q ss_pred             CCCCceEEEEcC
Q 014225          140 IEGIPCLVVLQP  151 (428)
Q Consensus       140 v~~~P~~~lid~  151 (428)
                      +.++|+++++++
T Consensus        69 i~~~Pt~~~~~~   80 (101)
T cd02961          69 VRGYPTIKLFPN   80 (101)
T ss_pred             CCCCCEEEEEcC
Confidence            999999999997

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>PLN02309 5'-adenylylsulfate reductase

Probab=98.88  E-value=9.1e-09  Score=103.69  Aligned_cols=68  Identities=19%  Similarity=0.360  Sum_probs=57.3

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+||++||++|+.+.|.+.+++++|...         ++.|+.|++|.+.                      ..
T Consensus       364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~---------~V~f~kVD~d~~~----------------------~~  412 (457)
T PLN02309        364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS---------GVKVAKFRADGDQ----------------------KE  412 (457)
T ss_pred             CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC---------CeEEEEEECCCcc----------------------hH
Confidence            5789999999999999999999999999998754         6888888888331                      45


Q ss_pred             HHH-hcCcCccceEEEECCC
Q 014225          305 LTK-YFDVQGIPCLVIIGPE  323 (428)
Q Consensus       305 ~~~-~~~v~~~P~~~lid~~  323 (428)
                      ++. .|+|.++||++++.++
T Consensus       413 la~~~~~I~~~PTil~f~~g  432 (457)
T PLN02309        413 FAKQELQLGSFPTILLFPKN  432 (457)
T ss_pred             HHHhhCCCceeeEEEEEeCC
Confidence            665 6999999999999443

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=98.88  E-value=1.3e-08  Score=84.91  Aligned_cols=101  Identities=16%  Similarity=0.248  Sum_probs=65.5

Q ss_pred             cCCcEEEEEEeccCChhHHhhhHHHH---HHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCc
Q 014225          224 LVGKTVGLYFSARWCIPCEKFMPKLL---SIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP  300 (428)
Q Consensus       224 ~~gk~vll~F~a~wC~~C~~~~~~l~---~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d  300 (428)
                      -.||+|+|+|++.||++|+.+...+-   ++.+..+.          ++.+|-+..|...                    
T Consensus        21 ~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~----------~Fv~V~l~~d~td--------------------   70 (130)
T cd02960          21 KSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE----------DFIMLNLVHETTD--------------------   70 (130)
T ss_pred             HCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh----------CeEEEEEEeccCC--------------------
Confidence            35899999999999999999887653   23333322          3544444443221                    


Q ss_pred             chhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHh
Q 014225          301 TIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAK  362 (428)
Q Consensus       301 ~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~  362 (428)
                        .... ..+ .++|+++++|++|+++.+--+    .++-..|-..+++++.|.+.+++++.
T Consensus        71 --~~~~-~~g-~~vPtivFld~~g~vi~~i~G----y~~~~~~~y~~~~~~~~~~~m~~a~~  124 (130)
T cd02960          71 --KNLS-PDG-QYVPRIMFVDPSLTVRADITG----RYSNRLYTYEPADIPLLIENMKKALK  124 (130)
T ss_pred             --CCcC-ccC-cccCeEEEECCCCCCcccccc----cccCccceeCcCcHHHHHHHHHHHHH
Confidence              0000 123 579999999999998887543    34444555667778888888877654

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=98.87  E-value=1.5e-08  Score=78.99  Aligned_cols=69  Identities=30%  Similarity=0.571  Sum_probs=58.3

Q ss_pred             cEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHH
Q 014225          227 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT  306 (428)
Q Consensus       227 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  306 (428)
                      ++++|.||++||++|..+.+.+.++.++ . .         ++.++.|+++.+                       ..+.
T Consensus        11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~-~---------~~~~~~i~~~~~-----------------------~~~~   56 (93)
T cd02947          11 KPVVVDFWAPWCGPCKAIAPVLEELAEE-Y-P---------KVKFVKVDVDEN-----------------------PELA   56 (93)
T ss_pred             CcEEEEEECCCChhHHHhhHHHHHHHHH-C-C---------CceEEEEECCCC-----------------------hhHH
Confidence            7899999999999999999999998877 2 2         588888888754                       6788


Q ss_pred             HhcCcCccceEEEECCCCcEEecc
Q 014225          307 KYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       307 ~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      +.|++.++|+++++ .+|+++...
T Consensus        57 ~~~~v~~~P~~~~~-~~g~~~~~~   79 (93)
T cd02947          57 EEYGVRSIPTFLFF-KNGKEVDRV   79 (93)
T ss_pred             HhcCcccccEEEEE-ECCEEEEEE
Confidence            89999999999999 677766553

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=9.3e-09  Score=86.78  Aligned_cols=110  Identities=18%  Similarity=0.287  Sum_probs=88.3

Q ss_pred             cccccccCc-cccCCCCEEecccCCCC-EEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHH
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSDLEGK-VTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNN  113 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk-~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~  113 (428)
                      ..|+.+||| |.|.+|+.|+|..+.|+ +|+++|| +.--|-|.+..-.++..|++++..+  .+++++|.|.... -++
T Consensus        64 ~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~--aeV~GlS~D~s~s-qKa  140 (211)
T KOG0855|consen   64 NKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAG--AEVIGLSGDDSAS-QKA  140 (211)
T ss_pred             ecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcC--ceEEeeccCchHH-HHH
Confidence            579999999 99999999999999875 8888888 5667889999999999999999987  9999999987643 677


Q ss_pred             HHhcCCCceeccCChHHHHHHHhhcCCCCCc-------eEEEEcC
Q 014225          114 YRACMPWLAVPYSDLETKKALNRKFDIEGIP-------CLVVLQP  151 (428)
Q Consensus       114 ~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P-------~~~lid~  151 (428)
                      |..+++......+|..  .++.+.+|+...|       ..+++++
T Consensus       141 F~sKqnlPYhLLSDpk--~e~ik~lGa~k~p~gg~~~Rsh~if~k  183 (211)
T KOG0855|consen  141 FASKQNLPYHLLSDPK--NEVIKDLGAPKDPFGGLPGRSHYIFDK  183 (211)
T ss_pred             hhhhccCCeeeecCcc--hhHHHHhCCCCCCCCCcccceEEEEec
Confidence            7766654333344555  7888888886644       4667775

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

Probab=98.86  E-value=2.6e-08  Score=90.71  Aligned_cols=114  Identities=19%  Similarity=0.400  Sum_probs=92.5

Q ss_pred             Cc-cccCCCCEEecccCCCCEEEEEEecCCCh-hhhhhHHHHHHHHHHHh-cCCCcEEEEEEecCC---ChHHHHHHHh-
Q 014225           44 DY-LLNQHGTQVKVSDLEGKVTALYFSANWYP-PCGNFTGVLVDVYEELR-NNGSDFEVVFVSSDE---DLNAFNNYRA-  116 (428)
Q Consensus        44 df-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~-~C~~~~p~l~~l~~~~~-~~~~~~~ii~vs~D~---~~~~~~~~~~-  116 (428)
                      +| |++.+|+.+++..++||+++|+|..+.|| .|...+..|.++.+++. ..+.++++++|++|.   +.+.+++|.. 
T Consensus        49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~  128 (207)
T COG1999          49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAEL  128 (207)
T ss_pred             ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcc
Confidence            79 99999999999999999999999999999 99999999999999998 666789999999984   4566777777 


Q ss_pred             cC--CCceeccCChHHHHHHHhhcCCCC---------------CceEEEEcCCCCCCCcccc
Q 014225          117 CM--PWLAVPYSDLETKKALNRKFDIEG---------------IPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       117 ~~--~~~~~~~~d~~~~~~l~~~~~v~~---------------~P~~~lid~~~~dG~i~~~  161 (428)
                      ..  .|..+.. ..+..+.+++.|++..               ...++++|+   +|++...
T Consensus       129 ~~~~~~~~ltg-~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~---~G~~~~~  186 (207)
T COG1999         129 NFDPRWIGLTG-TPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDA---DGRFLGT  186 (207)
T ss_pred             cCCCCeeeeeC-CHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECC---CCeEEEE
Confidence            22  2555544 3555588999888752               345788888   8877644

>PTZ00102 disulphide isomerase; Provisional

Probab=98.86  E-value=1.7e-08  Score=104.22  Aligned_cols=72  Identities=21%  Similarity=0.430  Sum_probs=59.4

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      +++.++|.|||+||++|+++.|.+.++++.++..       ..++.++.|+++.+                       ..
T Consensus        48 ~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~-------~~~i~~~~vd~~~~-----------------------~~   97 (477)
T PTZ00102         48 ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEK-------KSEIVLASVDATEE-----------------------ME   97 (477)
T ss_pred             cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhc-------CCcEEEEEEECCCC-----------------------HH
Confidence            4689999999999999999999999999888755       34567777766544                       68


Q ss_pred             HHHhcCcCccceEEEECCCCcE
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKT  326 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i  326 (428)
                      +++.|+|.++||+++++.++.+
T Consensus        98 l~~~~~i~~~Pt~~~~~~g~~~  119 (477)
T PTZ00102         98 LAQEFGVRGYPTIKFFNKGNPV  119 (477)
T ss_pred             HHHhcCCCcccEEEEEECCceE
Confidence            9999999999999999554444

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=98.85  E-value=7.5e-09  Score=104.34  Aligned_cols=68  Identities=16%  Similarity=0.383  Sum_probs=57.9

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      ++++|+|+|||+||++|+.+.|.+.++++++++.+  +.++.|++|.+..                      ....+.|+
T Consensus       370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~--v~~~kVdvD~~~~----------------------~~~~~~~~  425 (463)
T TIGR00424       370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSG--VKVAKFRADGDQK----------------------EFAKQELQ  425 (463)
T ss_pred             CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCC--cEEEEEECCCCcc----------------------HHHHHHcC
Confidence            67899999999999999999999999999998765  7888887775522                      33456899


Q ss_pred             CCCCceEEEEcC
Q 014225          140 IEGIPCLVVLQP  151 (428)
Q Consensus       140 v~~~P~~~lid~  151 (428)
                      |.++||++++.+
T Consensus       426 I~~~PTii~Fk~  437 (463)
T TIGR00424       426 LGSFPTILFFPK  437 (463)
T ss_pred             CCccceEEEEEC
Confidence            999999999985

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=98.82  E-value=2.1e-08  Score=80.71  Aligned_cols=65  Identities=15%  Similarity=0.424  Sum_probs=52.4

Q ss_pred             CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225           61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI  140 (428)
Q Consensus        61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v  140 (428)
                      +++++|+||++||++|+.+.|.+.++++.+++. .++.+..|+.+.                         ..+...+++
T Consensus        18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~-------------------------~~~~~~~~~   71 (104)
T cd02995          18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGD-DNVVIAKMDATA-------------------------NDVPSEFVV   71 (104)
T ss_pred             CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC-CCEEEEEEeCcc-------------------------hhhhhhccC
Confidence            589999999999999999999999999999773 236666655432                         234566788


Q ss_pred             CCCceEEEEcC
Q 014225          141 EGIPCLVVLQP  151 (428)
Q Consensus       141 ~~~P~~~lid~  151 (428)
                      .++|+++++.+
T Consensus        72 ~~~Pt~~~~~~   82 (104)
T cd02995          72 DGFPTILFFPA   82 (104)
T ss_pred             CCCCEEEEEcC
Confidence            99999999985

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=4.8e-09  Score=94.52  Aligned_cols=72  Identities=17%  Similarity=0.371  Sum_probs=57.4

Q ss_pred             cccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHH
Q 014225           56 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN  135 (428)
Q Consensus        56 l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~  135 (428)
                      ++.-.+|.|+|+|+|+||+||+++.|.+..+..+|+.    ..++-|++|  +-                      +..+
T Consensus        16 ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~----aVFlkVdVd--~c----------------------~~ta   67 (288)
T KOG0908|consen   16 LSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG----AVFLKVDVD--EC----------------------RGTA   67 (288)
T ss_pred             hhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc----cEEEEEeHH--Hh----------------------hchh
Confidence            4444579999999999999999999999999999954    445555443  22                      6777


Q ss_pred             hhcCCCCCceEEEEcCCCCCCCcc
Q 014225          136 RKFDIEGIPCLVVLQPYDDKDDAT  159 (428)
Q Consensus       136 ~~~~v~~~P~~~lid~~~~dG~i~  159 (428)
                      ..+||.++||++++.    ||.-+
T Consensus        68 a~~gV~amPTFiff~----ng~ki   87 (288)
T KOG0908|consen   68 ATNGVNAMPTFIFFR----NGVKI   87 (288)
T ss_pred             hhcCcccCceEEEEe----cCeEe
Confidence            889999999999999    57444

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=98.81  E-value=1.8e-08  Score=105.60  Aligned_cols=74  Identities=23%  Similarity=0.467  Sum_probs=58.5

Q ss_pred             cCCcEEEEEEeccCChhHHhhhHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCc
Q 014225          224 LVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP  300 (428)
Q Consensus       224 ~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d  300 (428)
                      .+||+|+|+|||+||++|+.+.+.+   .++.++++           ++.++.|+++.+.                   +
T Consensus       472 ~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-----------~~~~v~vDvt~~~-------------------~  521 (571)
T PRK00293        472 GKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-----------DTVLLQADVTANN-------------------A  521 (571)
T ss_pred             hcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-----------CCEEEEEECCCCC-------------------h
Confidence            4589999999999999999988764   45555553           4677778776432                   1


Q ss_pred             chhHHHHhcCcCccceEEEECCCCcEE
Q 014225          301 TIKELTKYFDVQGIPCLVIIGPEGKTV  327 (428)
Q Consensus       301 ~~~~~~~~~~v~~~P~~~lid~~G~i~  327 (428)
                      ...++.++|++.++|+++++|++|+++
T Consensus       522 ~~~~l~~~~~v~g~Pt~~~~~~~G~~i  548 (571)
T PRK00293        522 EDVALLKHYNVLGLPTILFFDAQGQEI  548 (571)
T ss_pred             hhHHHHHHcCCCCCCEEEEECCCCCCc
Confidence            236789999999999999999999985

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=98.80  E-value=1.1e-08  Score=90.62  Aligned_cols=68  Identities=13%  Similarity=0.266  Sum_probs=56.0

Q ss_pred             CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225           61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI  140 (428)
Q Consensus        61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v  140 (428)
                      +++|+|+||++||++|+.+.|.|.++++++..    +.++-|++|.                         ..++..|++
T Consensus        83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~----vkF~kVd~d~-------------------------~~l~~~f~v  133 (175)
T cd02987          83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA----VKFCKIRASA-------------------------TGASDEFDT  133 (175)
T ss_pred             CcEEEEEEECCCCchHHHHHHHHHHHHHHCCC----eEEEEEeccc-------------------------hhhHHhCCC
Confidence            46999999999999999999999999999842    6666664431                         156778999


Q ss_pred             CCCceEEEEcCCCCCCCcccc
Q 014225          141 EGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       141 ~~~P~~~lid~~~~dG~i~~~  161 (428)
                      .++||++++.    +|+++.+
T Consensus       134 ~~vPTlllyk----~G~~v~~  150 (175)
T cd02987         134 DALPALLVYK----GGELIGN  150 (175)
T ss_pred             CCCCEEEEEE----CCEEEEE
Confidence            9999999998    7987754

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=1.5e-08  Score=101.55  Aligned_cols=77  Identities=22%  Similarity=0.435  Sum_probs=62.6

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      ....++|.||||||++|++++|.+.++++.++..       +..+.+.-|....+                       .+
T Consensus        41 ~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~-------~s~i~LakVDat~~-----------------------~~   90 (493)
T KOG0190|consen   41 GHEFVLVEFYAPWCGHCKALAPEYEKAATELKEE-------GSPVKLAKVDATEE-----------------------SD   90 (493)
T ss_pred             cCceEEEEEEchhhhhhhhhCcHHHHHHHHhhcc-------CCCceeEEeecchh-----------------------hh
Confidence            3467899999999999999999999999999876       45566666554433                       78


Q ss_pred             HHHhcCcCccceEEEECCCCcE-Eecccc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKT-VTKQGR  332 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i-~~~~~~  332 (428)
                      ++.+|+|+++||+-++ ++|+. ....|+
T Consensus        91 ~~~~y~v~gyPTlkiF-rnG~~~~~Y~G~  118 (493)
T KOG0190|consen   91 LASKYEVRGYPTLKIF-RNGRSAQDYNGP  118 (493)
T ss_pred             hHhhhcCCCCCeEEEE-ecCCcceeccCc
Confidence            9999999999999999 99985 444443

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.75  E-value=4.8e-08  Score=78.64  Aligned_cols=65  Identities=22%  Similarity=0.331  Sum_probs=57.1

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .|+++++.|+++||++|..+.|.+.+++++|+++          +.++.|++|..                       ..
T Consensus        11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~----------v~f~~vd~~~~-----------------------~~   57 (103)
T cd02982          11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGK----------LLFVVVDADDF-----------------------GR   57 (103)
T ss_pred             cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe----------EEEEEEchHhh-----------------------HH
Confidence            3789999999999999999999999999999865          78888777643                       56


Q ss_pred             HHHhcCcC--ccceEEEECC
Q 014225          305 LTKYFDVQ--GIPCLVIIGP  322 (428)
Q Consensus       305 ~~~~~~v~--~~P~~~lid~  322 (428)
                      +++.||+.  ++|++++++.
T Consensus        58 ~~~~~~i~~~~~P~~~~~~~   77 (103)
T cd02982          58 HLEYFGLKEEDLPVIAIINL   77 (103)
T ss_pred             HHHHcCCChhhCCEEEEEec
Confidence            89999999  9999999966

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=98.75  E-value=4.2e-08  Score=90.85  Aligned_cols=95  Identities=21%  Similarity=0.374  Sum_probs=78.3

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      ...|+|.|+|.||+.++.+.|.+.+.++.|++.       .++-++|+-++|++.+                     ..+
T Consensus        13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e-------~P~~kvvwg~VDcd~e---------------------~~i   64 (375)
T KOG0912|consen   13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQE-------FPEGKVVWGKVDCDKE---------------------DDI   64 (375)
T ss_pred             ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHh-------CCCcceEEEEcccchh---------------------hHH
Confidence            467999999999999999999999999999987       4556778888887653                     789


Q ss_pred             HHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHh
Q 014225          306 TKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAK  362 (428)
Q Consensus       306 ~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~  362 (428)
                      +.+|.|+.+||+-|+ .+|.+..+..+             +.+.+++|.+.|++.+.
T Consensus        65 a~ky~I~KyPTlKvf-rnG~~~~rEYR-------------g~RsVeaL~efi~kq~s  107 (375)
T KOG0912|consen   65 ADKYHINKYPTLKVF-RNGEMMKREYR-------------GQRSVEALIEFIEKQLS  107 (375)
T ss_pred             hhhhccccCceeeee-eccchhhhhhc-------------cchhHHHHHHHHHHHhc
Confidence            999999999999999 99988876433             34556777777777654

>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=5.4e-08  Score=82.69  Aligned_cols=118  Identities=15%  Similarity=0.189  Sum_probs=88.4

Q ss_pred             CCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC-----
Q 014225          205 HDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-----  278 (428)
Q Consensus       205 ~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~-----  278 (428)
                      ..-+|+. |.+|+ .++++.++||++|+.--|+.|+.-...-..|+.|+++|++.         +++|++..+++     
T Consensus        13 siydf~~~d~~G~-~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~---------Gl~ILaFPCNQFg~QE   82 (171)
T KOG1651|consen   13 SIYDFSAKDLDGE-YVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQ---------GLEILAFPCNQFGNQE   82 (171)
T ss_pred             ceeeeEEecCCCC-CccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhC---------CeEEEEeccccccCcC
Confidence            4457888 99999 99999999999999999999999887778999999999988         89999999963     


Q ss_pred             --CHHHHHHHHhcCCccccccCC------cchhHHHHhcC----------cCccceEEEECCCCcEEecccc
Q 014225          279 --DQTSFESYFGTMPWLALPFGD------PTIKELTKYFD----------VQGIPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       279 --~~~~~~~~~~~~~~~~~~~~~------d~~~~~~~~~~----------v~~~P~~~lid~~G~i~~~~~~  332 (428)
                        +.+++..++.......||+..      +....+-+.+.          |+.-=+-||+|++|+++.|++.
T Consensus        83 p~~n~Ei~~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~p  154 (171)
T KOG1651|consen   83 PGSNEEILNFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSP  154 (171)
T ss_pred             CCCcHHHHHHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCC
Confidence              345777787755545555522      11122222211          1111157999999999998754

>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=1e-07  Score=79.64  Aligned_cols=120  Identities=13%  Similarity=0.117  Sum_probs=99.3

Q ss_pred             hccCCCCccc-CCCCCceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD  279 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~  279 (428)
                      +|.++|+|++ +.+.+ .+++.++.||..+|..+ +-..|.|......+++.+.++.           +..|+.||+| -
T Consensus        20 vGd~ap~ftl~~~dL~-~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~-----------~~~Vl~IS~D-L   86 (158)
T COG2077          20 VGDKAPDFTLVGKDLN-DVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG-----------NTVVLCISMD-L   86 (158)
T ss_pred             cCCcCCceEEEcCccc-ceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccC-----------CcEEEEEeCC-C
Confidence            6999999999 99999 99999999987666666 5588999999999998887765           5789999999 6


Q ss_pred             HHHHHHHHhcCCccccccCCc-chhHHHHhcCc--Ccc-------ceEEEECCCCcEEeccccch
Q 014225          280 QTSFESYFGTMPWLALPFGDP-TIKELTKYFDV--QGI-------PCLVIIGPEGKTVTKQGRNL  334 (428)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~v--~~~-------P~~~lid~~G~i~~~~~~~~  334 (428)
                      +-++++|+...+.-++..++| .+..+.+.||+  ...       .+++++|.+|+|++....+.
T Consensus        87 PFAq~RfC~aeGi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~elv~e  151 (158)
T COG2077          87 PFAQKRFCGAEGIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSELVPE  151 (158)
T ss_pred             hhHHhhhhhhcCcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEEccch
Confidence            678899999988777777777 45678899997  333       37899999999999865443

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=98.71  E-value=8.3e-08  Score=72.95  Aligned_cols=60  Identities=13%  Similarity=0.197  Sum_probs=46.6

Q ss_pred             EEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhcC
Q 014225          231 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFD  310 (428)
Q Consensus       231 l~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  310 (428)
                      |.||++|||+|..+.|.++++.+++...          +.++  .+| +.                       +.+..|+
T Consensus         3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~----------~~~~--~v~-~~-----------------------~~a~~~~   46 (76)
T TIGR00412         3 IQIYGTGCANCQMTEKNVKKAVEELGID----------AEFE--KVT-DM-----------------------NEILEAG   46 (76)
T ss_pred             EEEECCCCcCHHHHHHHHHHHHHHcCCC----------eEEE--EeC-CH-----------------------HHHHHcC
Confidence            7899999999999999999999987533          5554  444 21                       2256699


Q ss_pred             cCccceEEEECCCCcEEec
Q 014225          311 VQGIPCLVIIGPEGKTVTK  329 (428)
Q Consensus       311 v~~~P~~~lid~~G~i~~~  329 (428)
                      +.++|++++   ||+++..
T Consensus        47 v~~vPti~i---~G~~~~~   62 (76)
T TIGR00412        47 VTATPGVAV---DGELVIM   62 (76)
T ss_pred             CCcCCEEEE---CCEEEEE
Confidence            999999988   8888743

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>PLN02309 5'-adenylylsulfate reductase

Probab=98.70  E-value=5.2e-08  Score=98.25  Aligned_cols=67  Identities=18%  Similarity=0.403  Sum_probs=56.6

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHh-hc
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR-KF  138 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~-~~  138 (428)
                      ++++++|+|||+||++|+.+.|.+.+++++++..+  +.++.|++|.+.                       ..+++ .|
T Consensus       364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~--V~f~kVD~d~~~-----------------------~~la~~~~  418 (457)
T PLN02309        364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSG--VKVAKFRADGDQ-----------------------KEFAKQEL  418 (457)
T ss_pred             CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCC--eEEEEEECCCcc-----------------------hHHHHhhC
Confidence            68899999999999999999999999999998765  888887776331                       34554 69


Q ss_pred             CCCCCceEEEEcC
Q 014225          139 DIEGIPCLVVLQP  151 (428)
Q Consensus       139 ~v~~~P~~~lid~  151 (428)
                      +|.++||++++.+
T Consensus       419 ~I~~~PTil~f~~  431 (457)
T PLN02309        419 QLGSFPTILLFPK  431 (457)
T ss_pred             CCceeeEEEEEeC
Confidence            9999999999985

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=98.69  E-value=7.5e-08  Score=71.15  Aligned_cols=64  Identities=17%  Similarity=0.219  Sum_probs=50.2

Q ss_pred             EEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHh
Q 014225          229 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKY  308 (428)
Q Consensus       229 vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  308 (428)
                      -+..|+++|||+|+...+.|+++.+.+           +++.+..++++.+                       .++++.
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~-----------~~i~~~~id~~~~-----------------------~~l~~~   47 (67)
T cd02973           2 NIEVFVSPTCPYCPDAVQAANRIAALN-----------PNISAEMIDAAEF-----------------------PDLADE   47 (67)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHhC-----------CceEEEEEEcccC-----------------------HhHHHH
Confidence            367899999999999999999886643           2578888877754                       568889


Q ss_pred             cCcCccceEEEECCCCcEEec
Q 014225          309 FDVQGIPCLVIIGPEGKTVTK  329 (428)
Q Consensus       309 ~~v~~~P~~~lid~~G~i~~~  329 (428)
                      ||+.++|++++   +|+++..
T Consensus        48 ~~i~~vPti~i---~~~~~~~   65 (67)
T cd02973          48 YGVMSVPAIVI---NGKVEFV   65 (67)
T ss_pred             cCCcccCEEEE---CCEEEEe
Confidence            99999999865   4566654

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>PHA02125 thioredoxin-like protein

Probab=98.68  E-value=1e-07  Score=72.21  Aligned_cols=57  Identities=32%  Similarity=0.584  Sum_probs=43.2

Q ss_pred             EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225          230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF  309 (428)
Q Consensus       230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  309 (428)
                      ++.||++||++|+.+.|.|.++.                +.++-|+.|..                       .++++.|
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~----------------~~~~~vd~~~~-----------------------~~l~~~~   42 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE----------------YTYVDVDTDEG-----------------------VELTAKH   42 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh----------------heEEeeeCCCC-----------------------HHHHHHc
Confidence            68999999999999999886431                34555555433                       6789999


Q ss_pred             CcCccceEEEECCCCcEEec
Q 014225          310 DVQGIPCLVIIGPEGKTVTK  329 (428)
Q Consensus       310 ~v~~~P~~~lid~~G~i~~~  329 (428)
                      +|.++||++    +|+.+.+
T Consensus        43 ~v~~~PT~~----~g~~~~~   58 (75)
T PHA02125         43 HIRSLPTLV----NTSTLDR   58 (75)
T ss_pred             CCceeCeEE----CCEEEEE
Confidence            999999986    5666554

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=98.68  E-value=8.3e-08  Score=74.68  Aligned_cols=67  Identities=25%  Similarity=0.487  Sum_probs=55.2

Q ss_pred             CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225           61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI  140 (428)
Q Consensus        61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v  140 (428)
                      +++++|.||++||++|+...+.++++.+.  ..  ++.++.++.+..                        ..+.+.|++
T Consensus        10 ~~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~--~~~~~~i~~~~~------------------------~~~~~~~~v   61 (93)
T cd02947          10 AKPVVVDFWAPWCGPCKAIAPVLEELAEE--YP--KVKFVKVDVDEN------------------------PELAEEYGV   61 (93)
T ss_pred             CCcEEEEEECCCChhHHHhhHHHHHHHHH--CC--CceEEEEECCCC------------------------hhHHHhcCc
Confidence            38999999999999999999999999888  22  377887766543                        677888999


Q ss_pred             CCCceEEEEcCCCCCCCcc
Q 014225          141 EGIPCLVVLQPYDDKDDAT  159 (428)
Q Consensus       141 ~~~P~~~lid~~~~dG~i~  159 (428)
                      .++|+++++.    +|+++
T Consensus        62 ~~~P~~~~~~----~g~~~   76 (93)
T cd02947          62 RSIPTFLFFK----NGKEV   76 (93)
T ss_pred             ccccEEEEEE----CCEEE
Confidence            9999999998    56543

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=98.68  E-value=5e-08  Score=87.72  Aligned_cols=67  Identities=12%  Similarity=0.181  Sum_probs=54.6

Q ss_pred             CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225           61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI  140 (428)
Q Consensus        61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v  140 (428)
                      +++|+|+||++||++|+.+.|.|.+++.+|..    +.++-|+++                           .....|++
T Consensus       102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~----vkFvkI~ad---------------------------~~~~~~~i  150 (192)
T cd02988         102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFPD----TKFVKIIST---------------------------QCIPNYPD  150 (192)
T ss_pred             CCEEEEEEECCCCchHHHHHHHHHHHHHHCCC----CEEEEEEhH---------------------------HhHhhCCC
Confidence            46999999999999999999999999999853    566665442                           12467999


Q ss_pred             CCCceEEEEcCCCCCCCccccc
Q 014225          141 EGIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       141 ~~~P~~~lid~~~~dG~i~~~~  162 (428)
                      .++||++++.    +|+++...
T Consensus       151 ~~lPTlliyk----~G~~v~~i  168 (192)
T cd02988         151 KNLPTILVYR----NGDIVKQF  168 (192)
T ss_pred             CCCCEEEEEE----CCEEEEEE
Confidence            9999999998    79887653

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=98.67  E-value=2.9e-07  Score=75.79  Aligned_cols=79  Identities=16%  Similarity=0.206  Sum_probs=57.1

Q ss_pred             ccCCcEEEEEEeccCChhHHhhhHH-H--HHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCC
Q 014225          223 SLVGKTVGLYFSARWCIPCEKFMPK-L--LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGD  299 (428)
Q Consensus       223 ~~~gk~vll~F~a~wC~~C~~~~~~-l--~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~  299 (428)
                      .-++|+++|+|+++||++|..+... |  .++.+.+...          +.++.++++...                   
T Consensus        14 k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~----------~v~~~~d~~~~e-------------------   64 (114)
T cd02958          14 KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIREN----------FIFWQCDIDSSE-------------------   64 (114)
T ss_pred             HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhC----------EEEEEecCCCcc-------------------
Confidence            3458999999999999999998764 3  2344444433          444444443211                   


Q ss_pred             cchhHHHHhcCcCccceEEEECC-CCcEEecccc
Q 014225          300 PTIKELTKYFDVQGIPCLVIIGP-EGKTVTKQGR  332 (428)
Q Consensus       300 d~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~~  332 (428)
                        ...+++.|++.++|++++||+ +|+++.+..|
T Consensus        65 --~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G   96 (114)
T cd02958          65 --GQRFLQSYKVDKYPHIAIIDPRTGEVLKVWSG   96 (114)
T ss_pred             --HHHHHHHhCccCCCeEEEEeCccCcEeEEEcC
Confidence              367888999999999999999 8999987433

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=98.64  E-value=1.1e-07  Score=72.98  Aligned_cols=58  Identities=21%  Similarity=0.394  Sum_probs=47.7

Q ss_pred             EEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCC
Q 014225           64 TALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGI  143 (428)
Q Consensus        64 vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~  143 (428)
                      .+..||++||++|+...|.|.++++.++..   +.++.|+.+.+                        ..+++.|++.++
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~vd~~~~------------------------~~~~~~~~v~~v   54 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA---VEVEYINVMEN------------------------PQKAMEYGIMAV   54 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcCc---eEEEEEeCccC------------------------HHHHHHcCCccC
Confidence            467899999999999999999999998643   77777766543                        456678999999


Q ss_pred             ceEEE
Q 014225          144 PCLVV  148 (428)
Q Consensus       144 P~~~l  148 (428)
                      |++++
T Consensus        55 Pt~~~   59 (82)
T TIGR00411        55 PAIVI   59 (82)
T ss_pred             CEEEE
Confidence            99875

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=98.62  E-value=2.8e-07  Score=75.45  Aligned_cols=73  Identities=15%  Similarity=0.131  Sum_probs=47.5

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      +.+.+||.|+|+| |+|.+ .|++.+|+.+|...       ...+.|.-|.++...+                  ..+.+
T Consensus        17 ~~~~vlV~F~A~~-Pwc~k-~~~~~~LA~e~~~a-------a~~v~lakVd~~d~~~------------------~~~~~   69 (116)
T cd03007          17 KFKYSLVKFDTAY-PYGEK-HEAFTRLAESSASA-------TDDLLVAEVGIKDYGE------------------KLNME   69 (116)
T ss_pred             cCCcEEEEEeCCC-CCCCC-hHHHHHHHHHHHhh-------cCceEEEEEecccccc------------------hhhHH
Confidence            3478999999944 34444 36666666666443       2235666666643100                  01378


Q ss_pred             HHHhcCcC--ccceEEEECCCCc
Q 014225          305 LTKYFDVQ--GIPCLVIIGPEGK  325 (428)
Q Consensus       305 ~~~~~~v~--~~P~~~lid~~G~  325 (428)
                      |++.|+|+  ++||+.++ ++|.
T Consensus        70 L~~~y~I~~~gyPTl~lF-~~g~   91 (116)
T cd03007          70 LGERYKLDKESYPVIYLF-HGGD   91 (116)
T ss_pred             HHHHhCCCcCCCCEEEEE-eCCC
Confidence            99999999  99999999 5563

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=98.61  E-value=9.7e-08  Score=100.07  Aligned_cols=76  Identities=17%  Similarity=0.349  Sum_probs=58.8

Q ss_pred             ccCCCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHH
Q 014225           57 SDLEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKA  133 (428)
Q Consensus        57 ~~~~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~  133 (428)
                      ...+||+|+|+|||+||++|+.+.+.+   .++.++++  +  +.++.++++++.+                    ...+
T Consensus       470 a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~--~~~v~vDvt~~~~--------------------~~~~  525 (571)
T PRK00293        470 AKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--D--TVLLQADVTANNA--------------------EDVA  525 (571)
T ss_pred             HHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--C--CEEEEEECCCCCh--------------------hhHH
Confidence            345689999999999999999987764   55666663  2  6677776654421                    1168


Q ss_pred             HHhhcCCCCCceEEEEcCCCCCCCcc
Q 014225          134 LNRKFDIEGIPCLVVLQPYDDKDDAT  159 (428)
Q Consensus       134 l~~~~~v~~~P~~~lid~~~~dG~i~  159 (428)
                      +.+.|++.++|+++++++   +|+++
T Consensus       526 l~~~~~v~g~Pt~~~~~~---~G~~i  548 (571)
T PRK00293        526 LLKHYNVLGLPTILFFDA---QGQEI  548 (571)
T ss_pred             HHHHcCCCCCCEEEEECC---CCCCc
Confidence            899999999999999999   99774

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=98.61  E-value=1.4e-07  Score=73.94  Aligned_cols=72  Identities=11%  Similarity=0.141  Sum_probs=59.1

Q ss_pred             ccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCc
Q 014225          221 VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP  300 (428)
Q Consensus       221 l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d  300 (428)
                      +.++++.+.+..|+++||++|....+.+.++...+.           ++.+..+.++..                     
T Consensus         7 ~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-----------~i~~~~vd~~~~---------------------   54 (89)
T cd03026           7 IRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNP-----------NIEHEMIDGALF---------------------   54 (89)
T ss_pred             HHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-----------CceEEEEEhHhC---------------------
Confidence            346778888999999999999999999988887643           478888887744                     


Q ss_pred             chhHHHHhcCcCccceEEEECCCCcEEec
Q 014225          301 TIKELTKYFDVQGIPCLVIIGPEGKTVTK  329 (428)
Q Consensus       301 ~~~~~~~~~~v~~~P~~~lid~~G~i~~~  329 (428)
                        .++++.|||.++|++++   ||+++..
T Consensus        55 --~e~a~~~~V~~vPt~vi---dG~~~~~   78 (89)
T cd03026          55 --QDEVEERGIMSVPAIFL---NGELFGF   78 (89)
T ss_pred             --HHHHHHcCCccCCEEEE---CCEEEEe
Confidence              67899999999999975   6888876

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=3.9e-07  Score=77.78  Aligned_cols=138  Identities=14%  Similarity=0.263  Sum_probs=104.0

Q ss_pred             hccCCCCcccCCCCCceecccccCCcEEEEEEe--ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC-
Q 014225          202 LTNHDRGYLLGHPPDEKVPVSSLVGKTVGLYFS--ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-  278 (428)
Q Consensus       202 ~g~~~p~f~l~~~g~~~v~l~~~~gk~vll~F~--a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~-  278 (428)
                      +|+.+|+|..++.-. .+.+.++.|.-+.|.|.  +...|.|..++..+.+++-+|..+         +++.+++|+|. 
T Consensus         8 lgd~~PNfea~Tt~g-~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KR---------nvKlialS~d~v   77 (224)
T KOG0854|consen    8 LGDTVPNFEADTTVG-KIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKR---------NVKLIALSVDDV   77 (224)
T ss_pred             ccCcCCCcccccccc-ceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhc---------CceEEEeehhhH
Confidence            699999999955555 69999999977777777  457999999999999999999877         89999999995 


Q ss_pred             -CHHHHHHHH----hcCC-ccccccCCcchhHHHHhcCc------------CccceEEEECCCCcEEeccccchhhcccc
Q 014225          279 -DQTSFESYF----GTMP-WLALPFGDPTIKELTKYFDV------------QGIPCLVIIGPEGKTVTKQGRNLINLYQE  340 (428)
Q Consensus       279 -~~~~~~~~~----~~~~-~~~~~~~~d~~~~~~~~~~v------------~~~P~~~lid~~G~i~~~~~~~~~~~~g~  340 (428)
                       +...|.+-+    ...+ -+.+|+..|...+++-.|+.            .....+++||++.++.-...         
T Consensus        78 esH~~Wi~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~l---------  148 (224)
T KOG0854|consen   78 ESHKDWIKDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSFL---------  148 (224)
T ss_pred             HHHHHHHHHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEEEE---------
Confidence             344444444    3222 37889999999999888865            12457899999999987642         


Q ss_pred             cCCCC-ChHHHHHHHHHHHHH
Q 014225          341 NAYPF-TEAKLEFLEKQMEEE  360 (428)
Q Consensus       341 ~~~p~-~~~~~~~L~~~l~~~  360 (428)
                        ||. +.+..+|+...|..+
T Consensus       149 --YP~ttGRN~dEiLRvidsL  167 (224)
T KOG0854|consen  149 --YPSTTGRNFDEILRVIDSL  167 (224)
T ss_pred             --cccccCcCHHHHHHHHHHH
Confidence              232 234456777766654

>PF13728 TraF: F plasmid transfer operon protein

Probab=98.54  E-value=3.6e-07  Score=83.73  Aligned_cols=85  Identities=25%  Similarity=0.326  Sum_probs=66.1

Q ss_pred             ccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCc
Q 014225          221 VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP  300 (428)
Q Consensus       221 l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d  300 (428)
                      +..+.++.-|++|+.+.|++|+.+.|.|..+.++|            ++.|+.||+|....           ..||....
T Consensus       115 l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y------------g~~v~~vs~DG~~~-----------~~fp~~~~  171 (215)
T PF13728_consen  115 LKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY------------GFSVIPVSLDGRPI-----------PSFPNPRP  171 (215)
T ss_pred             HHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh------------CCEEEEEecCCCCC-----------cCCCCCCC
Confidence            33445667799999999999999999999999988            58999999996421           23333222


Q ss_pred             chhHHHHhcCcCccceEEEECCCCcEEec
Q 014225          301 TIKELTKYFDVQGIPCLVIIGPEGKTVTK  329 (428)
Q Consensus       301 ~~~~~~~~~~v~~~P~~~lid~~G~i~~~  329 (428)
                       +..+++.+||..+|++||+++++.....
T Consensus       172 -~~g~~~~l~v~~~Pal~Lv~~~~~~~~p  199 (215)
T PF13728_consen  172 -DPGQAKRLGVKVTPALFLVNPNTKKWYP  199 (215)
T ss_pred             -CHHHHHHcCCCcCCEEEEEECCCCeEEE
Confidence             5778889999999999999999844443

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.53  E-value=2.7e-07  Score=74.22  Aligned_cols=64  Identities=14%  Similarity=0.250  Sum_probs=55.5

Q ss_pred             CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225           61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI  140 (428)
Q Consensus        61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v  140 (428)
                      |+++++.|+++||++|....|.+.+++++++++   +.++.|+.|..                        ..+++.|++
T Consensus        12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~---v~f~~vd~~~~------------------------~~~~~~~~i   64 (103)
T cd02982          12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK---LLFVVVDADDF------------------------GRHLEYFGL   64 (103)
T ss_pred             CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe---EEEEEEchHhh------------------------HHHHHHcCC
Confidence            789999999999999999999999999999864   77777654432                        678889999


Q ss_pred             C--CCceEEEEcC
Q 014225          141 E--GIPCLVVLQP  151 (428)
Q Consensus       141 ~--~~P~~~lid~  151 (428)
                      .  ++|++++++.
T Consensus        65 ~~~~~P~~~~~~~   77 (103)
T cd02982          65 KEEDLPVIAIINL   77 (103)
T ss_pred             ChhhCCEEEEEec
Confidence            9  9999999995

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]

Probab=98.52  E-value=6.6e-07  Score=81.34  Aligned_cols=117  Identities=20%  Similarity=0.332  Sum_probs=90.7

Q ss_pred             cCc-cccCCCCEEecccCCCCEEEEEEecCCCh-hhhhhHHHHHHHHHHHhcC-CCcEEEEEEecCC---ChHHHHHHHh
Q 014225           43 RDY-LLNQHGTQVKVSDLEGKVTALYFSANWYP-PCGNFTGVLVDVYEELRNN-GSDFEVVFVSSDE---DLNAFNNYRA  116 (428)
Q Consensus        43 pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~-~C~~~~p~l~~l~~~~~~~-~~~~~ii~vs~D~---~~~~~~~~~~  116 (428)
                      -.| |.+.+|+.++-.++.||.++++|-.+.|| .|..++..|.++.+++... +..+.-|+|++|.   +.+.+++|++
T Consensus       120 GpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~  199 (280)
T KOG2792|consen  120 GPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVS  199 (280)
T ss_pred             CceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHH
Confidence            358 99999999999999999999999999999 8999999999999998765 3344578999986   6677888888


Q ss_pred             cCC--CceeccCChHHHHHHHhhcCCCC---------------CceEEEEcCCCCCCCcccccc
Q 014225          117 CMP--WLAVPYSDLETKKALNRKFDIEG---------------IPCLVVLQPYDDKDDATLHDG  163 (428)
Q Consensus       117 ~~~--~~~~~~~d~~~~~~l~~~~~v~~---------------~P~~~lid~~~~dG~i~~~~~  163 (428)
                      ++.  .+-+.. ..+.-..+++.|.|-.               .=.++||||   +|+.+...+
T Consensus       200 eF~pkllGLTG-T~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidP---eg~Fvd~~G  259 (280)
T KOG2792|consen  200 EFHPKLLGLTG-TTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDP---EGEFVDYYG  259 (280)
T ss_pred             hcChhhhcccC-CHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECC---Ccceehhhc
Confidence            753  222332 3333378889988732               225789999   997775543

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=98.49  E-value=4.3e-07  Score=91.21  Aligned_cols=81  Identities=20%  Similarity=0.312  Sum_probs=59.5

Q ss_pred             CCCCEEecccCCC-CEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCC
Q 014225           49 QHGTQVKVSDLEG-KVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSD  127 (428)
Q Consensus        49 ~~G~~v~l~~~~g-k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d  127 (428)
                      +++.+++-.-+.. +..+|.||++||++|+++.|.++++++.+.+...=+.|.+|  |...+                  
T Consensus        44 Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaV--dCA~~------------------  103 (606)
T KOG1731|consen   44 LDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAV--DCADE------------------  103 (606)
T ss_pred             eehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEe--eccch------------------
Confidence            3444433333322 47899999999999999999999999999886422344444  33321                  


Q ss_pred             hHHHHHHHhhcCCCCCceEEEEcC
Q 014225          128 LETKKALNRKFDIEGIPCLVVLQP  151 (428)
Q Consensus       128 ~~~~~~l~~~~~v~~~P~~~lid~  151 (428)
                        .+..+++.|+|+++|++..+.+
T Consensus       104 --~N~~lCRef~V~~~Ptlryf~~  125 (606)
T KOG1731|consen  104 --ENVKLCREFSVSGYPTLRYFPP  125 (606)
T ss_pred             --hhhhhHhhcCCCCCceeeecCC
Confidence              1289999999999999999998

>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines

Probab=98.48  E-value=3.6e-08  Score=60.44  Aligned_cols=28  Identities=36%  Similarity=1.124  Sum_probs=14.3

Q ss_pred             ccccccCCCCc-eeEeccCCCCCCccccc
Q 014225          390 ICCDCDEQGSG-WAYQCLECGYEVHPKCV  417 (428)
Q Consensus       390 ~c~~C~~~g~~-~~~~~~~~~~~~~~~~~  417 (428)
                      .|+.|++.+.+ |.|+|..|+|+||..||
T Consensus         2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca   30 (30)
T PF07649_consen    2 RCDACGKPIDGGWFYRCSECDFDLHEECA   30 (30)
T ss_dssp             --TTTS----S--EEE-TTT-----HHHH
T ss_pred             cCCcCCCcCCCCceEECccCCCccChhcC
Confidence            69999999998 99999999999999996

The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=98.48  E-value=8.7e-07  Score=82.68  Aligned_cols=107  Identities=14%  Similarity=0.197  Sum_probs=78.0

Q ss_pred             ccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCc
Q 014225          221 VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP  300 (428)
Q Consensus       221 l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d  300 (428)
                      +..+.++.-+++||.+.|++|.++.|.++.+.++|            ++.|+.||+|...           ...||....
T Consensus       145 i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y------------gi~v~~VS~DG~~-----------~p~fp~~~~  201 (256)
T TIGR02739       145 IQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY------------GISVIPISVDGTL-----------IPGLPNSRS  201 (256)
T ss_pred             HHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh------------CCeEEEEecCCCC-----------CCCCCCccC
Confidence            34455667899999999999999999999999988            5899999999652           123443322


Q ss_pred             chhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhcC
Q 014225          301 TIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNL  364 (428)
Q Consensus       301 ~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~  364 (428)
                       +...++.+||..+|++||++++.+....-+      +|..       ..++|.+.|..++...
T Consensus       202 -d~gqa~~l~v~~~Pal~Lv~~~t~~~~pv~------~G~i-------S~deL~~Ri~~v~~~f  251 (256)
T TIGR02739       202 -DSGQAQHLGVKYFPALYLVNPKSQKMSPLA------YGFI-------SQDELKERILNVLTQF  251 (256)
T ss_pred             -ChHHHHhcCCccCceEEEEECCCCcEEEEe------eccC-------CHHHHHHHHHHHHhcc
Confidence             466788999999999999999965444322      2211       1467777777766544

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=98.48  E-value=1.1e-07  Score=87.69  Aligned_cols=75  Identities=19%  Similarity=0.388  Sum_probs=57.2

Q ss_pred             cEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHH
Q 014225          227 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT  306 (428)
Q Consensus       227 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  306 (428)
                      -.++|.||||||.+|+++.|.|.++--++++-         +.-|-.-.+|...                     -..++
T Consensus        44 diW~VdFYAPWC~HCKkLePiWdeVG~elkdi---------g~PikVGKlDaT~---------------------f~aiA   93 (468)
T KOG4277|consen   44 DIWFVDFYAPWCAHCKKLEPIWDEVGHELKDI---------GLPIKVGKLDATR---------------------FPAIA   93 (468)
T ss_pred             CeEEEEeechhhhhcccccchhHHhCcchhhc---------CCceeeccccccc---------------------chhhH
Confidence            57999999999999999999999998888765         3333333445442                     26789


Q ss_pred             HhcCcCccceEEEECCCCcEEecccc
Q 014225          307 KYFDVQGIPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       307 ~~~~v~~~P~~~lid~~G~i~~~~~~  332 (428)
                      ..|||+++||+.++ ++|-.+...|+
T Consensus        94 nefgiqGYPTIk~~-kgd~a~dYRG~  118 (468)
T KOG4277|consen   94 NEFGIQGYPTIKFF-KGDHAIDYRGG  118 (468)
T ss_pred             hhhccCCCceEEEe-cCCeeeecCCC
Confidence            99999999999999 66655554443

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.44  E-value=6.1e-06  Score=86.76  Aligned_cols=181  Identities=13%  Similarity=0.136  Sum_probs=106.2

Q ss_pred             ccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHh
Q 014225           57 SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR  136 (428)
Q Consensus        57 ~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~  136 (428)
                      ..+++.+.++.|+.+.|..|......|+++.+ +.+   ++.+.....+.                        ...+++
T Consensus       362 ~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~---~i~~~~~~~~~------------------------~~~~~~  413 (555)
T TIGR03143       362 GRLENPVTLLLFLDGSNEKSAELQSFLGEFAS-LSE---KLNSEAVNRGE------------------------EPESET  413 (555)
T ss_pred             HhcCCCEEEEEEECCCchhhHHHHHHHHHHHh-cCC---cEEEEEecccc------------------------chhhHh
Confidence            46778888999999889899886666666553 223   25554432211                        167888


Q ss_pred             hcCCCCCceEEEEcCCCCCCCcccccchhhhhhcccCccccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCcccCCCCC
Q 014225          137 KFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPD  216 (428)
Q Consensus       137 ~~~v~~~P~~~lid~~~~dG~i~~~~~~~~i~~~g~~~~p~t~~~~~~l~~~~~~~~~~~~~~~~~g~~~p~f~l~~~g~  216 (428)
                      .|++...|++.+++.   +|+-..   ++      ....|.-.+....+.+....           +...+.+.    ..
T Consensus       414 ~~~v~~~P~~~i~~~---~~~~~~---i~------f~g~P~G~Ef~s~i~~i~~~-----------~~~~~~l~----~~  466 (555)
T TIGR03143       414 LPKITKLPTVALLDD---DGNYTG---LK------FHGVPSGHELNSFILALYNA-----------AGPGQPLG----EE  466 (555)
T ss_pred             hcCCCcCCEEEEEeC---CCcccc---eE------EEecCccHhHHHHHHHHHHh-----------cCCCCCCC----HH
Confidence            999999999999976   553211   00      11122222222222222111           11111110    00


Q ss_pred             ceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccc
Q 014225          217 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALP  296 (428)
Q Consensus       217 ~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~  296 (428)
                      ..=.+..+.++..+-.|.+++||+|......++++....           +++..-.|.....                 
T Consensus       467 ~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~-----------~~i~~~~i~~~~~-----------------  518 (555)
T TIGR03143       467 LLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLN-----------PNVEAEMIDVSHF-----------------  518 (555)
T ss_pred             HHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhC-----------CCceEEEEECccc-----------------
Confidence            011233445556677778999999998777776666553           2466555555433                 


Q ss_pred             cCCcchhHHHHhcCcCccceEEEECCCCcEEec
Q 014225          297 FGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK  329 (428)
Q Consensus       297 ~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~  329 (428)
                            .++++.|+|.++|++++   ||+++..
T Consensus       519 ------~~~~~~~~v~~vP~~~i---~~~~~~~  542 (555)
T TIGR03143       519 ------PDLKDEYGIMSVPAIVV---DDQQVYF  542 (555)
T ss_pred             ------HHHHHhCCceecCEEEE---CCEEEEe
Confidence                  68899999999999975   4666654

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=98.44  E-value=6.7e-07  Score=66.00  Aligned_cols=57  Identities=12%  Similarity=0.233  Sum_probs=44.1

Q ss_pred             EEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCC
Q 014225           64 TALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGI  143 (428)
Q Consensus        64 vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~  143 (428)
                      -++.|+++||++|+...+.|+++.+...    ++.+..+++|.+                        ..+++.|++.++
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~----~i~~~~id~~~~------------------------~~l~~~~~i~~v   53 (67)
T cd02973           2 NIEVFVSPTCPYCPDAVQAANRIAALNP----NISAEMIDAAEF------------------------PDLADEYGVMSV   53 (67)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHhCC----ceEEEEEEcccC------------------------HhHHHHcCCccc
Confidence            3678999999999999999998866532    277776655433                        567788999999


Q ss_pred             ceEEE
Q 014225          144 PCLVV  148 (428)
Q Consensus       144 P~~~l  148 (428)
                      |++++
T Consensus        54 Pti~i   58 (67)
T cd02973          54 PAIVI   58 (67)
T ss_pred             CEEEE
Confidence            99754

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=98.40  E-value=1.6e-06  Score=80.50  Aligned_cols=106  Identities=15%  Similarity=0.137  Sum_probs=75.0

Q ss_pred             cccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcc
Q 014225          222 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT  301 (428)
Q Consensus       222 ~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~  301 (428)
                      +++.++.-|++||.+.||+|.++.|.|+.+.++|            ++.|+.||+|....           ..||.... 
T Consensus       139 ~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y------------g~~v~~VS~DG~~~-----------p~fp~~~~-  194 (248)
T PRK13703        139 AKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY------------GLSVIPVSVDGVIN-----------PLLPDSRT-  194 (248)
T ss_pred             HHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh------------CCeEEEEecCCCCC-----------CCCCCCcc-
Confidence            3344556789999999999999999999999988            58999999996421           23443322 


Q ss_pred             hhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhcC
Q 014225          302 IKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNL  364 (428)
Q Consensus       302 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~  364 (428)
                      +...+..+||..+|++||++++.+-...-      .+|..       ..++|.+.|..++.+.
T Consensus       195 d~gqa~~l~v~~~PAl~Lv~~~t~~~~pv------~~G~i-------S~deL~~Ri~~v~t~~  244 (248)
T PRK13703        195 DQGQAQRLGVKYFPALMLVDPKSGSVRPL------SYGFI-------TQDDLAKRFLNVSTDF  244 (248)
T ss_pred             ChhHHHhcCCcccceEEEEECCCCcEEEE------eeccC-------CHHHHHHHHHHHHhcc
Confidence            34556899999999999999997443332      22221       1467777777666543

>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=1.8e-06  Score=72.66  Aligned_cols=116  Identities=16%  Similarity=0.136  Sum_probs=82.1

Q ss_pred             ccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecC-------CChHHHHH
Q 014225           42 DRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-------EDLNAFNN  113 (428)
Q Consensus        42 ~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D-------~~~~~~~~  113 (428)
                      .-|| +.+.+|++++|++++||++||.-.||-|+.-. .-..|+.+|++|+++|  ++|++...+       .+.+++++
T Consensus         5 ~yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~G--f~VLgFPcNQF~~QEPg~~eEI~~   81 (162)
T COG0386           5 IYDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKG--FEVLGFPCNQFGGQEPGSDEEIAK   81 (162)
T ss_pred             cccceeeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCC--cEEEeccccccccCCCCCHHHHHH
Confidence            4467 89999999999999999999999999999777 4567999999999999  999999865       34566777


Q ss_pred             HHh-cCCCceeccC-------ChH-HHHHHHhhcC-------CCCCceEEEEcCCCCCCCcccccc
Q 014225          114 YRA-CMPWLAVPYS-------DLE-TKKALNRKFD-------IEGIPCLVVLQPYDDKDDATLHDG  163 (428)
Q Consensus       114 ~~~-~~~~~~~~~~-------d~~-~~~~l~~~~~-------v~~~P~~~lid~~~~dG~i~~~~~  163 (428)
                      |-. +++..+.-|.       +.. .-+.|.....       |..=-+-+|||+   +|+|+.+..
T Consensus        82 fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr---~G~VV~Rf~  144 (162)
T COG0386          82 FCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDR---DGNVVKRFS  144 (162)
T ss_pred             HHHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcC---CCcEEEeeC
Confidence            765 3443211111       111 1123333221       222346789999   999997743

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=98.35  E-value=2.8e-06  Score=70.87  Aligned_cols=72  Identities=8%  Similarity=0.137  Sum_probs=47.2

Q ss_pred             CCCCEEEEEEecCCChhhhhhHHHHHH---HHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHH
Q 014225           59 LEGKVTALYFSANWYPPCGNFTGVLVD---VYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN  135 (428)
Q Consensus        59 ~~gk~vlv~F~a~wC~~C~~~~p~l~~---l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~  135 (428)
                      -++|+|+|+|++.||++|+.+...+-.   +.+.+.++   +.+|-+..|....                 ..   .   
T Consensus        21 ~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~---Fv~V~l~~d~td~-----------------~~---~---   74 (130)
T cd02960          21 KSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQED---FIMLNLVHETTDK-----------------NL---S---   74 (130)
T ss_pred             HCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhC---eEEEEEEeccCCC-----------------Cc---C---
Confidence            368999999999999999998765422   33333232   6555554443321                 00   0   


Q ss_pred             hhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          136 RKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       136 ~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                       ..+ .++|+++|+|+   +|+++.+
T Consensus        75 -~~g-~~vPtivFld~---~g~vi~~   95 (130)
T cd02960          75 -PDG-QYVPRIMFVDP---SLTVRAD   95 (130)
T ss_pred             -ccC-cccCeEEEECC---CCCCccc
Confidence             022 47999999999   9988765

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=98.35  E-value=1.3e-06  Score=67.28  Aligned_cols=46  Identities=30%  Similarity=0.638  Sum_probs=33.7

Q ss_pred             cCCcEEEEEEeccCChhHHhhhHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC
Q 014225          224 LVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRD  279 (428)
Q Consensus       224 ~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~  279 (428)
                      -.||+++|+|+++||++|+.+...+   .++.+.+..          ++..+.|..+..
T Consensus        15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~----------~fv~v~vd~~~~   63 (82)
T PF13899_consen   15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK----------NFVLVKVDVDDE   63 (82)
T ss_dssp             HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH----------CSEEEEEETTTH
T ss_pred             HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC----------CEEEEEEEcCCC
Confidence            3589999999999999999988776   334443543          467777776543

...

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=98.34  E-value=1.6e-06  Score=65.86  Aligned_cols=53  Identities=17%  Similarity=0.100  Sum_probs=41.6

Q ss_pred             EEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCce
Q 014225           66 LYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPC  145 (428)
Q Consensus        66 v~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~  145 (428)
                      |.||++||++|+...|.++++.+++...   ++++-|  | +                        ...+..|++.++|+
T Consensus         3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~---~~~~~v--~-~------------------------~~~a~~~~v~~vPt   52 (76)
T TIGR00412         3 IQIYGTGCANCQMTEKNVKKAVEELGID---AEFEKV--T-D------------------------MNEILEAGVTATPG   52 (76)
T ss_pred             EEEECCCCcCHHHHHHHHHHHHHHcCCC---eEEEEe--C-C------------------------HHHHHHcCCCcCCE
Confidence            7899999999999999999999997543   566544  3 1                        12245699999999


Q ss_pred             EEE
Q 014225          146 LVV  148 (428)
Q Consensus       146 ~~l  148 (428)
                      +++
T Consensus        53 i~i   55 (76)
T TIGR00412        53 VAV   55 (76)
T ss_pred             EEE
Confidence            888

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1

Probab=98.33  E-value=2.9e-06  Score=68.57  Aligned_cols=60  Identities=18%  Similarity=0.239  Sum_probs=55.3

Q ss_pred             Cccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC
Q 014225          208 GYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR  278 (428)
Q Consensus       208 ~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~  278 (428)
                      +|++ +.+|+ .++++.++||++||.-.|+.|+.-. ....|++|+++|+++         +++|+++.+++
T Consensus         3 df~~~~~~G~-~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~---------gl~ILaFPcnq   63 (108)
T PF00255_consen    3 DFSAKDIDGK-PVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDK---------GLEILAFPCNQ   63 (108)
T ss_dssp             GSEEEBTTSS-EEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGG---------TEEEEEEEBST
T ss_pred             ceeeeCCCCC-EECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcC---------CeEEEeeehHH
Confidence            5777 99999 9999999999999999999999888 888999999999987         89999999864

11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....

>PHA02125 thioredoxin-like protein

Probab=98.33  E-value=1.4e-06  Score=66.06  Aligned_cols=50  Identities=30%  Similarity=0.500  Sum_probs=37.7

Q ss_pred             EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCc
Q 014225           65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP  144 (428)
Q Consensus        65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P  144 (428)
                      ++.||++||++|+...|.|+++.         +.++-  +|.+..                      .++++.|++.++|
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~---------~~~~~--vd~~~~----------------------~~l~~~~~v~~~P   48 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE---------YTYVD--VDTDEG----------------------VELTAKHHIRSLP   48 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh---------heEEe--eeCCCC----------------------HHHHHHcCCceeC
Confidence            68999999999999999886531         33333  333222                      7889999999999


Q ss_pred             eEE
Q 014225          145 CLV  147 (428)
Q Consensus       145 ~~~  147 (428)
                      +++
T Consensus        49 T~~   51 (75)
T PHA02125         49 TLV   51 (75)
T ss_pred             eEE
Confidence            976

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=98.29  E-value=2e-06  Score=66.28  Aligned_cols=44  Identities=39%  Similarity=0.681  Sum_probs=31.3

Q ss_pred             CCCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhcCCCcEEEEEEecC
Q 014225           59 LEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSD  105 (428)
Q Consensus        59 ~~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~vs~D  105 (428)
                      -+||+++|+|+++||++|+.+...+   .++.+.+.++   +..+.|..+
T Consensus        15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~---fv~v~vd~~   61 (82)
T PF13899_consen   15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKN---FVLVKVDVD   61 (82)
T ss_dssp             HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHC---SEEEEEETT
T ss_pred             HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCC---EEEEEEEcC
Confidence            3589999999999999999987666   2344434443   666655543

...

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=98.29  E-value=1.6e-06  Score=80.48  Aligned_cols=75  Identities=16%  Similarity=0.293  Sum_probs=65.7

Q ss_pred             CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225           61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI  140 (428)
Q Consensus        61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v  140 (428)
                      ..+|+|+|||.||+.++...|.+.+.+.+++..-++-.++.-++|.+.+                      ..|+.+|.|
T Consensus        13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e----------------------~~ia~ky~I   70 (375)
T KOG0912|consen   13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE----------------------DDIADKYHI   70 (375)
T ss_pred             ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh----------------------hHHhhhhcc
Confidence            4689999999999999999999999999998876556677777887766                      789999999


Q ss_pred             CCCceEEEEcCCCCCCCcccc
Q 014225          141 EGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       141 ~~~P~~~lid~~~~dG~i~~~  161 (428)
                      ..+||+-++.    +|....+
T Consensus        71 ~KyPTlKvfr----nG~~~~r   87 (375)
T KOG0912|consen   71 NKYPTLKVFR----NGEMMKR   87 (375)
T ss_pred             ccCceeeeee----ccchhhh
Confidence            9999999999    7877654

>smart00594 UAS UAS domain

Probab=98.28  E-value=6.8e-06  Score=68.47  Aligned_cols=70  Identities=14%  Similarity=0.318  Sum_probs=51.4

Q ss_pred             cCCcEEEEEEeccCChhHHhhhHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCc
Q 014225          224 LVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP  300 (428)
Q Consensus       224 ~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d  300 (428)
                      -.+|.++|+|+++||++|..+....   .++.+.+..          ++.++.++++...                    
T Consensus        25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~----------~fv~~~~dv~~~e--------------------   74 (122)
T smart00594       25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE----------NFIFWQVDVDTSE--------------------   74 (122)
T ss_pred             hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc----------CEEEEEecCCChh--------------------
Confidence            3578999999999999999977653   234444432          3555555544322                    


Q ss_pred             chhHHHHhcCcCccceEEEECCCC
Q 014225          301 TIKELTKYFDVQGIPCLVIIGPEG  324 (428)
Q Consensus       301 ~~~~~~~~~~v~~~P~~~lid~~G  324 (428)
                       ...++..|++.++|+++++|++|
T Consensus        75 -g~~l~~~~~~~~~P~~~~l~~~~   97 (122)
T smart00594       75 -GQRVSQFYKLDSFPYVAIVDPRT   97 (122)
T ss_pred             -HHHHHHhcCcCCCCEEEEEecCC
Confidence             36789999999999999999998

>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=98.26  E-value=3.4e-06  Score=72.28  Aligned_cols=117  Identities=21%  Similarity=0.286  Sum_probs=87.8

Q ss_pred             cccccCc----cccCCCCEEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCCh--HHH
Q 014225           39 ASKDRDY----LLNQHGTQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL--NAF  111 (428)
Q Consensus        39 g~~~pdf----l~~~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~--~~~  111 (428)
                      ...+|+|    +.+..-+.++|++++||.|++.|| ..+---|..++-.+...+.+|++.+  -++|++|+|...  -+|
T Consensus         7 ~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n--~eVig~S~DS~fshlAW   84 (196)
T KOG0852|consen    7 FKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLN--TEVLGISTDSVFSHLAW   84 (196)
T ss_pred             CCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcC--CeEEEEeccchhhhhhH
Confidence            3455777    344445589999999999999999 5555589999999999999999987  999999999753  445


Q ss_pred             HHHHhcCC---CceeccCChHHHHHHHhhcCC----C--CCceEEEEcCCCCCCCcccc
Q 014225          112 NNYRACMP---WLAVPYSDLETKKALNRKFDI----E--GIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       112 ~~~~~~~~---~~~~~~~d~~~~~~l~~~~~v----~--~~P~~~lid~~~~dG~i~~~  161 (428)
                      ...-++.+   -+.+|. -.+.+.++++.||+    .  .+-.++|||+   +|.+...
T Consensus        85 ~ntprk~gGlg~~~iPl-lsD~~~~IsrdyGvL~~~~G~~lRglfIId~---~gi~R~i  139 (196)
T KOG0852|consen   85 INTPRKQGGLGPLNIPL-LSDLNHEISRDYGVLKEDEGIALRGLFIIDP---DGILRQI  139 (196)
T ss_pred             hcCchhhCCcCccccce-eeccchhhHHhcCceecCCCcceeeeEEEcc---ccceEEe
Confidence            55555432   234554 33344899999998    3  3457999999   9977654

>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines

Probab=98.24  E-value=6.4e-07  Score=54.78  Aligned_cols=29  Identities=34%  Similarity=0.969  Sum_probs=27.1

Q ss_pred             cccccccCCCCce-eEeccCCCCCCccccc
Q 014225          389 FICCDCDEQGSGW-AYQCLECGYEVHPKCV  417 (428)
Q Consensus       389 ~~c~~C~~~g~~~-~~~~~~~~~~~~~~~~  417 (428)
                      ++|+.|.+...+- .|+|++|+|.||++||
T Consensus         1 ~~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca   30 (30)
T PF03107_consen    1 FWCDVCRRKIDGFYFYHCSECCFTLHVRCA   30 (30)
T ss_pred             CCCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence            5899999998887 9999999999999997

The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.

>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1

Probab=98.24  E-value=5.6e-06  Score=66.89  Aligned_cols=60  Identities=22%  Similarity=0.340  Sum_probs=55.4

Q ss_pred             Cc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCC
Q 014225           44 DY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE  106 (428)
Q Consensus        44 df-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~  106 (428)
                      || +.+.+|++++|+.++||++||.-.|+-|+.-. ....|++++++|+++|  ++|++...+.
T Consensus         3 df~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~g--l~ILaFPcnq   63 (108)
T PF00255_consen    3 DFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKG--LEILAFPCNQ   63 (108)
T ss_dssp             GSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGT--EEEEEEEBST
T ss_pred             ceeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCC--eEEEeeehHH
Confidence            56 78999999999999999999999999999888 8889999999999998  9999998654

11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=98.23  E-value=3.6e-06  Score=65.92  Aligned_cols=65  Identities=11%  Similarity=0.106  Sum_probs=52.0

Q ss_pred             cccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHH
Q 014225           56 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN  135 (428)
Q Consensus        56 l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~  135 (428)
                      +.++++.+-+..|+++||++|....+.+.++.+.+.    ++.+..+++|..                        ..++
T Consensus         7 ~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~----~i~~~~vd~~~~------------------------~e~a   58 (89)
T cd03026           7 IRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNP----NIEHEMIDGALF------------------------QDEV   58 (89)
T ss_pred             HHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC----CceEEEEEhHhC------------------------HHHH
Confidence            346788899999999999999999999998887753    266666654433                        6788


Q ss_pred             hhcCCCCCceEEE
Q 014225          136 RKFDIEGIPCLVV  148 (428)
Q Consensus       136 ~~~~v~~~P~~~l  148 (428)
                      +.|++.++|++++
T Consensus        59 ~~~~V~~vPt~vi   71 (89)
T cd03026          59 EERGIMSVPAIFL   71 (89)
T ss_pred             HHcCCccCCEEEE
Confidence            8999999999964

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=98.23  E-value=1.1e-06  Score=81.32  Aligned_cols=66  Identities=23%  Similarity=0.418  Sum_probs=54.2

Q ss_pred             CEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCC
Q 014225           62 KVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE  141 (428)
Q Consensus        62 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~  141 (428)
                      ..++|+|||+||++|++..|.+.++-.++++.|..+.+--  +|.+.                |      ..++..|+++
T Consensus        44 diW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGK--lDaT~----------------f------~aiAnefgiq   99 (468)
T KOG4277|consen   44 DIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGK--LDATR----------------F------PAIANEFGIQ   99 (468)
T ss_pred             CeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecc--ccccc----------------c------hhhHhhhccC
Confidence            5999999999999999999999999999998874433332  33321                2      7899999999


Q ss_pred             CCceEEEEcC
Q 014225          142 GIPCLVVLQP  151 (428)
Q Consensus       142 ~~P~~~lid~  151 (428)
                      ++||+.++..
T Consensus       100 GYPTIk~~kg  109 (468)
T KOG4277|consen  100 GYPTIKFFKG  109 (468)
T ss_pred             CCceEEEecC
Confidence            9999999995

>PF13728 TraF: F plasmid transfer operon protein

Probab=98.20  E-value=3.9e-06  Score=76.91  Aligned_cols=80  Identities=20%  Similarity=0.358  Sum_probs=65.3

Q ss_pred             cccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHH
Q 014225           56 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN  135 (428)
Q Consensus        56 l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~  135 (428)
                      +..+.++.-|++|+.+.|+.|..+.|.|+.+.+++   |  +.|+.||+|...-           ..+|-...  +..++
T Consensus       115 l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y---g--~~v~~vs~DG~~~-----------~~fp~~~~--~~g~~  176 (215)
T PF13728_consen  115 LKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY---G--FSVIPVSLDGRPI-----------PSFPNPRP--DPGQA  176 (215)
T ss_pred             HHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh---C--CEEEEEecCCCCC-----------cCCCCCCC--CHHHH
Confidence            44667889999999999999999999999999998   4  8999999997632           12222222  27788


Q ss_pred             hhcCCCCCceEEEEcCCCCCC
Q 014225          136 RKFDIEGIPCLVVLQPYDDKD  156 (428)
Q Consensus       136 ~~~~v~~~P~~~lid~~~~dG  156 (428)
                      +.+++..+|+++|+++   ++
T Consensus       177 ~~l~v~~~Pal~Lv~~---~~  194 (215)
T PF13728_consen  177 KRLGVKVTPALFLVNP---NT  194 (215)
T ss_pred             HHcCCCcCCEEEEEEC---CC
Confidence            9999999999999999   66

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=98.19  E-value=2.8e-06  Score=71.34  Aligned_cols=78  Identities=22%  Similarity=0.445  Sum_probs=47.0

Q ss_pred             ccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcch
Q 014225          223 SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI  302 (428)
Q Consensus       223 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~  302 (428)
                      ....+..++.|..+|||.|....|.|.++++.-.           ++++-.+..|.+.+...+|+               
T Consensus        38 ~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-----------~i~~~~i~rd~~~el~~~~l---------------   91 (129)
T PF14595_consen   38 SIQKPYNILVITETWCGDCARNVPVLAKIAEANP-----------NIEVRIILRDENKELMDQYL---------------   91 (129)
T ss_dssp             T--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-----------TEEEEEE-HHHHHHHTTTTT---------------
T ss_pred             hcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-----------CCeEEEEEecCChhHHHHHH---------------
Confidence            3445667888999999999999999999998642           46777777665432211111               


Q ss_pred             hHHHHhcCcCccceEEEECCCCcEEeccc
Q 014225          303 KELTKYFDVQGIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       303 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~  331 (428)
                           ..|...+|+++++|.+|+.+.+.+
T Consensus        92 -----t~g~~~IP~~I~~d~~~~~lg~wg  115 (129)
T PF14595_consen   92 -----TNGGRSIPTFIFLDKDGKELGRWG  115 (129)
T ss_dssp             -----T-SS--SSEEEEE-TT--EEEEEE
T ss_pred             -----hCCCeecCEEEEEcCCCCEeEEEc
Confidence                 147889999999999999988643

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=98.15  E-value=4.1e-06  Score=68.57  Aligned_cols=69  Identities=12%  Similarity=0.187  Sum_probs=45.6

Q ss_pred             CCCEEEEEEec--CCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhh
Q 014225           60 EGKVTALYFSA--NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK  137 (428)
Q Consensus        60 ~gk~vlv~F~a--~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~  137 (428)
                      +.+.+||.|+|  +||+   + .|+.++++.++.....++.+.-|.+|...                  +. ....|+++
T Consensus        17 ~~~~vlV~F~A~~Pwc~---k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~------------------~~-~~~~L~~~   73 (116)
T cd03007          17 KFKYSLVKFDTAYPYGE---K-HEAFTRLAESSASATDDLLVAEVGIKDYG------------------EK-LNMELGER   73 (116)
T ss_pred             cCCcEEEEEeCCCCCCC---C-hHHHHHHHHHHHhhcCceEEEEEeccccc------------------ch-hhHHHHHH
Confidence            56899999999  6666   3 35566666666443223555555443211                  11 12789999


Q ss_pred             cCCC--CCceEEEEcC
Q 014225          138 FDIE--GIPCLVVLQP  151 (428)
Q Consensus       138 ~~v~--~~P~~~lid~  151 (428)
                      |+|.  ++||+.++..
T Consensus        74 y~I~~~gyPTl~lF~~   89 (116)
T cd03007          74 YKLDKESYPVIYLFHG   89 (116)
T ss_pred             hCCCcCCCCEEEEEeC
Confidence            9999  9999999994

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=98.12  E-value=2.5e-05  Score=65.61  Aligned_cols=125  Identities=20%  Similarity=0.263  Sum_probs=94.2

Q ss_pred             cccccccCc-cccCCCCEEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHH
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNY  114 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~  114 (428)
                      .+|+++||| |.+.+.+.+++.++.||..+|..+ +-.-+-|......+++.+.++.+    ..++.||.|--. +.++|
T Consensus        19 ~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~----~~Vl~IS~DLPF-Aq~Rf   93 (158)
T COG2077          19 QVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN----TVVLCISMDLPF-AQKRF   93 (158)
T ss_pred             ccCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC----cEEEEEeCCChh-HHhhh
Confidence            479999999 999999999999999997666655 66778999999999998888754    779999887543 36667


Q ss_pred             HhcCCCcee-ccCChHHHHHHHhhcCC--CCCc-------eEEEEcCCCCCCCcccccchhhhhhc
Q 014225          115 RACMPWLAV-PYSDLETKKALNRKFDI--EGIP-------CLVVLQPYDDKDDATLHDGVELIYKY  170 (428)
Q Consensus       115 ~~~~~~~~~-~~~d~~~~~~l~~~~~v--~~~P-------~~~lid~~~~dG~i~~~~~~~~i~~~  170 (428)
                      -...+...+ +.+|- ....+.+.||+  ...|       +.+++|.   +|++.+..+...|.+.
T Consensus        94 C~aeGi~nv~~lSd~-r~~~Fge~yGv~I~egpL~gLlARaV~V~De---~g~V~y~elv~eit~e  155 (158)
T COG2077          94 CGAEGIENVITLSDF-RDRAFGENYGVLINEGPLAGLLARAVFVLDE---NGKVTYSELVPEITEE  155 (158)
T ss_pred             hhhcCcccceEhhhh-hhhhhhHhhCEEeccccccCeeeeEEEEEcC---CCcEEEEEccchhhcC
Confidence            766665422 23221 22678888986  3444       6788998   9999999887766543

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=98.12  E-value=1.5e-05  Score=65.44  Aligned_cols=77  Identities=14%  Similarity=0.168  Sum_probs=52.8

Q ss_pred             cCCCCEEEEEEecCCChhhhhhHHH-H--HHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHH
Q 014225           58 DLEGKVTALYFSANWYPPCGNFTGV-L--VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKAL  134 (428)
Q Consensus        58 ~~~gk~vlv~F~a~wC~~C~~~~p~-l--~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l  134 (428)
                      .-++|+++|+|+++||++|..+... |  .++.+.++++   +..+.++++..+                     . ..+
T Consensus        14 k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~---~v~~~~d~~~~e---------------------~-~~~   68 (114)
T cd02958          14 KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIREN---FIFWQCDIDSSE---------------------G-QRF   68 (114)
T ss_pred             HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhC---EEEEEecCCCcc---------------------H-HHH
Confidence            3468999999999999999997643 2  2244444433   555544443221                     1 678


Q ss_pred             HhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          135 NRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       135 ~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      ...|++.++|++++|++  .+|+++.+
T Consensus        69 ~~~~~~~~~P~~~~i~~--~~g~~l~~   93 (114)
T cd02958          69 LQSYKVDKYPHIAIIDP--RTGEVLKV   93 (114)
T ss_pred             HHHhCccCCCeEEEEeC--ccCcEeEE
Confidence            88999999999999997  24766543

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=98.12  E-value=3e-05  Score=70.77  Aligned_cols=136  Identities=17%  Similarity=0.232  Sum_probs=92.3

Q ss_pred             hhccCCCCccc-CCCCCce-ecccccC--CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEE-
Q 014225          201 LLTNHDRGYLL-GHPPDEK-VPVSSLV--GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS-  275 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g~~~-v~l~~~~--gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is-  275 (428)
                      .+|.++||..+ +.+|+ . .++-++.  ++|+||+|.+-.||+-..-++.++++.++|.+..        ++-+|.|. 
T Consensus        74 ~~G~~APns~vv~l~g~-~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~a--------dFl~VYI~E  144 (237)
T PF00837_consen   74 KLGGPAPNSPVVTLDGQ-RSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVA--------DFLIVYIEE  144 (237)
T ss_pred             eCCCCCCCCceEeeCCC-cceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhh--------heehhhHhh
Confidence            46999999999 99999 6 8999984  5999999999889999999999999999998751        34444431 


Q ss_pred             ---cC--------------CCHH---HHHHHHhcCCccccccCCc-chhHHHHhcCcCccceEEEECCCCcEEeccccch
Q 014225          276 ---TD--------------RDQT---SFESYFGTMPWLALPFGDP-TIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNL  334 (428)
Q Consensus       276 ---~d--------------~~~~---~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~  334 (428)
                         .|              .+.+   ...+.+.+.. ..+|+..| .++...+.||..-- .+||| .+|+|++++|.. 
T Consensus       145 AHpsDgW~~~~~~~~i~qh~sledR~~aA~~l~~~~-~~~pi~vD~mdN~~~~~YgA~Pe-RlyIi-~~gkv~Y~Gg~G-  220 (237)
T PF00837_consen  145 AHPSDGWAFGNNPYEIPQHRSLEDRLRAAKLLKEEF-PQCPIVVDTMDNNFNKAYGALPE-RLYII-QDGKVVYKGGPG-  220 (237)
T ss_pred             hCcCCCccCCCCceeecCCCCHHHHHHHHHHHHhhC-CCCCEEEEccCCHHHHHhCCCcc-eEEEE-ECCEEEEeCCCC-
Confidence               11              0111   1222222222 45676555 56677888875433 36677 799999997642 


Q ss_pred             hhcccccCCCCChHHHHHHHHHHHH
Q 014225          335 INLYQENAYPFTEAKLEFLEKQMEE  359 (428)
Q Consensus       335 ~~~~g~~~~p~~~~~~~~L~~~l~~  359 (428)
                             +|.+..   +++++.|++
T Consensus       221 -------P~~y~~---~e~r~~L~~  235 (237)
T PF00837_consen  221 -------PFGYSP---EELREWLEK  235 (237)
T ss_pred             -------CCcCCH---HHHHHHHHh
Confidence                   333443   555665554

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.11  E-value=1.2e-05  Score=64.90  Aligned_cols=71  Identities=34%  Similarity=0.622  Sum_probs=53.8

Q ss_pred             EEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecC-CChHHHHHHHhcCCCceeccCChHHH
Q 014225           53 QVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-EDLNAFNNYRACMPWLAVPYSDLETK  131 (428)
Q Consensus        53 ~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D-~~~~~~~~~~~~~~~~~~~~~d~~~~  131 (428)
                      .......+++++++.||++||++|+..+|.+.++.+++...   +.++.++.. ..                        
T Consensus        24 ~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~i~~~~~~------------------------   76 (127)
T COG0526          24 PLSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGD---VEVVAVNVDDEN------------------------   76 (127)
T ss_pred             ceehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcCC---cEEEEEECCCCC------------------------
Confidence            34444455899999999999999999999999999999762   677777664 12                        


Q ss_pred             HHHHhhcC--CCCCceEEEEc
Q 014225          132 KALNRKFD--IEGIPCLVVLQ  150 (428)
Q Consensus       132 ~~l~~~~~--v~~~P~~~lid  150 (428)
                      ..+...|+  +..+|++++..
T Consensus        77 ~~~~~~~~~~~~~~p~~~~~~   97 (127)
T COG0526          77 PDLAAEFGVAVRSIPTLLLFK   97 (127)
T ss_pred             hHHHHHHhhhhccCCeEEEEe
Confidence            44555555  67778877555

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=98.11  E-value=1.6e-05  Score=56.50  Aligned_cols=63  Identities=29%  Similarity=0.575  Sum_probs=48.3

Q ss_pred             EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225          230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF  309 (428)
Q Consensus       230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  309 (428)
                      ++.||++||++|.+..+.+.++  .+..         .++.++.++++.....                    ......+
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~--~~~~---------~~~~~~~~~~~~~~~~--------------------~~~~~~~   49 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAEL--ALLN---------KGVKFEAVDVDEDPAL--------------------EKELKRY   49 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHH--HhhC---------CCcEEEEEEcCCChHH--------------------hhHHHhC
Confidence            4789999999999999999988  3332         3789999998865321                    1113578


Q ss_pred             CcCccceEEEECCC
Q 014225          310 DVQGIPCLVIIGPE  323 (428)
Q Consensus       310 ~v~~~P~~~lid~~  323 (428)
                      ++..+|++++++++
T Consensus        50 ~~~~~P~~~~~~~~   63 (69)
T cd01659          50 GVGGVPTLVVFGPG   63 (69)
T ss_pred             CCccccEEEEEeCC
Confidence            89999999999766

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.09  E-value=1.1e-05  Score=64.98  Aligned_cols=72  Identities=38%  Similarity=0.625  Sum_probs=54.4

Q ss_pred             ccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCc
Q 014225          221 VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP  300 (428)
Q Consensus       221 l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d  300 (428)
                      ...+.++++++.||++||++|+.+.|.+.++.+++..          .+.++.++....                     
T Consensus        27 ~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~~~i~~~~~---------------------   75 (127)
T COG0526          27 LSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG----------DVEVVAVNVDDE---------------------   75 (127)
T ss_pred             hhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC----------CcEEEEEECCCC---------------------
Confidence            3334488999999999999999999999999998864          267888887511                     


Q ss_pred             chhHHHHhcC--cCccceEEEECCCCc
Q 014225          301 TIKELTKYFD--VQGIPCLVIIGPEGK  325 (428)
Q Consensus       301 ~~~~~~~~~~--v~~~P~~~lid~~G~  325 (428)
                       ...+...|+  +..+|+++++ .+|.
T Consensus        76 -~~~~~~~~~~~~~~~p~~~~~-~~~~  100 (127)
T COG0526          76 -NPDLAAEFGVAVRSIPTLLLF-KDGK  100 (127)
T ss_pred             -ChHHHHHHhhhhccCCeEEEE-eCcc
Confidence             256666777  8888988755 4443

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=98.07  E-value=9e-06  Score=75.92  Aligned_cols=78  Identities=19%  Similarity=0.339  Sum_probs=63.8

Q ss_pred             cccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHH
Q 014225           56 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN  135 (428)
Q Consensus        56 l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~  135 (428)
                      +..+.++.-+++||.+.|++|..+.|.|+.+.++|   |  +.++.||+|...-           ..+|-...+  ..++
T Consensus       145 i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y---g--i~v~~VS~DG~~~-----------p~fp~~~~d--~gqa  206 (256)
T TIGR02739       145 IQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY---G--ISVIPISVDGTLI-----------PGLPNSRSD--SGQA  206 (256)
T ss_pred             HHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh---C--CeEEEEecCCCCC-----------CCCCCccCC--hHHH
Confidence            34566789999999999999999999999999997   4  8899999997632           123322222  6788


Q ss_pred             hhcCCCCCceEEEEcC
Q 014225          136 RKFDIEGIPCLVVLQP  151 (428)
Q Consensus       136 ~~~~v~~~P~~~lid~  151 (428)
                      +.+|+..+|+++|+++
T Consensus       207 ~~l~v~~~Pal~Lv~~  222 (256)
T TIGR02739       207 QHLGVKYFPALYLVNP  222 (256)
T ss_pred             HhcCCccCceEEEEEC
Confidence            9999999999999999

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=98.03  E-value=5.1e-06  Score=83.66  Aligned_cols=69  Identities=23%  Similarity=0.428  Sum_probs=57.9

Q ss_pred             cEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHH
Q 014225          227 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT  306 (428)
Q Consensus       227 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  306 (428)
                      +..+|.||++||++|+++.|.++++++.....       .+=+.|.+|++-.+.                     +..++
T Consensus        58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W-------~~vv~vaaVdCA~~~---------------------N~~lC  109 (606)
T KOG1731|consen   58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKW-------RPVVRVAAVDCADEE---------------------NVKLC  109 (606)
T ss_pred             hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcc-------cceeEEEEeeccchh---------------------hhhhH
Confidence            46789999999999999999999999998776       344666677665432                     58899


Q ss_pred             HhcCcCccceEEEECCC
Q 014225          307 KYFDVQGIPCLVIIGPE  323 (428)
Q Consensus       307 ~~~~v~~~P~~~lid~~  323 (428)
                      +.|+|.++|++..+.++
T Consensus       110 Ref~V~~~Ptlryf~~~  126 (606)
T KOG1731|consen  110 REFSVSGYPTLRYFPPD  126 (606)
T ss_pred             hhcCCCCCceeeecCCc
Confidence            99999999999999777

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=98.03  E-value=4.1e-05  Score=66.28  Aligned_cols=81  Identities=19%  Similarity=0.362  Sum_probs=45.2

Q ss_pred             cCCcEEEEEEeccCChhHHhhhHH-H--HHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCH-HHHHHHHhcCCccccccCC
Q 014225          224 LVGKTVGLYFSARWCIPCEKFMPK-L--LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ-TSFESYFGTMPWLALPFGD  299 (428)
Q Consensus       224 ~~gk~vll~F~a~wC~~C~~~~~~-l--~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~-~~~~~~~~~~~~~~~~~~~  299 (428)
                      -.+|+++|.++++||.+|..+... +  .++++.+...            +|.|.+|.+. .++...+.           
T Consensus        35 ~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~------------FI~VkvDree~Pdid~~y~-----------   91 (163)
T PF03190_consen   35 KENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN------------FIPVKVDREERPDIDKIYM-----------   91 (163)
T ss_dssp             HHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-------------EEEEEETTT-HHHHHHHH-----------
T ss_pred             hcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC------------EEEEEeccccCccHHHHHH-----------
Confidence            357999999999999999987752 2  2455555554            6666776543 22222221           


Q ss_pred             cchhHHHHhcCcCccceEEEECCCCcEEecc
Q 014225          300 PTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       300 d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                         .......|..+.|++++++++|+.++..
T Consensus        92 ---~~~~~~~~~gGwPl~vfltPdg~p~~~~  119 (163)
T PF03190_consen   92 ---NAVQAMSGSGGWPLTVFLTPDGKPFFGG  119 (163)
T ss_dssp             ---HHHHHHHS---SSEEEEE-TTS-EEEEE
T ss_pred             ---HHHHHhcCCCCCCceEEECCCCCeeeee
Confidence               1111223788999999999999998864

; PDB: 3IRA_A.

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=98.00  E-value=1.3e-05  Score=74.53  Aligned_cols=78  Identities=22%  Similarity=0.413  Sum_probs=62.8

Q ss_pred             cccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHH
Q 014225           56 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN  135 (428)
Q Consensus        56 l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~  135 (428)
                      +..+.++.-|++||.+.|++|..+.|.|+.+.+++   |  +.++.||+|....           ..+|....+  ...+
T Consensus       138 i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y---g--~~v~~VS~DG~~~-----------p~fp~~~~d--~gqa  199 (248)
T PRK13703        138 IAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY---G--LSVIPVSVDGVIN-----------PLLPDSRTD--QGQA  199 (248)
T ss_pred             HHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh---C--CeEEEEecCCCCC-----------CCCCCCccC--hhHH
Confidence            34566778999999999999999999999999997   4  8899999997532           123322222  5566


Q ss_pred             hhcCCCCCceEEEEcC
Q 014225          136 RKFDIEGIPCLVVLQP  151 (428)
Q Consensus       136 ~~~~v~~~P~~~lid~  151 (428)
                      +.+++..+|+++|+++
T Consensus       200 ~~l~v~~~PAl~Lv~~  215 (248)
T PRK13703        200 QRLGVKYFPALMLVDP  215 (248)
T ss_pred             HhcCCcccceEEEEEC
Confidence            8999999999999998

>smart00594 UAS UAS domain

Probab=97.91  E-value=4.4e-05  Score=63.57  Aligned_cols=71  Identities=15%  Similarity=0.311  Sum_probs=49.6

Q ss_pred             cCCCCEEEEEEecCCChhhhhhHHHH-H--HHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHH
Q 014225           58 DLEGKVTALYFSANWYPPCGNFTGVL-V--DVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKAL  134 (428)
Q Consensus        58 ~~~gk~vlv~F~a~wC~~C~~~~p~l-~--~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l  134 (428)
                      .-++|.++|+|+++||++|..+.-.+ .  ++.+.+.+ .  +.++.++++..+                     . ..+
T Consensus        24 k~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~-~--fv~~~~dv~~~e---------------------g-~~l   78 (122)
T smart00594       24 SRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE-N--FIFWQVDVDTSE---------------------G-QRV   78 (122)
T ss_pred             HhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc-C--EEEEEecCCChh---------------------H-HHH
Confidence            34689999999999999999976432 1  13333333 2  444444333222                     2 688


Q ss_pred             HhhcCCCCCceEEEEcCCCCCC
Q 014225          135 NRKFDIEGIPCLVVLQPYDDKD  156 (428)
Q Consensus       135 ~~~~~v~~~P~~~lid~~~~dG  156 (428)
                      +..|++.++|+++++++   +|
T Consensus        79 ~~~~~~~~~P~~~~l~~---~~   97 (122)
T smart00594       79 SQFYKLDSFPYVAIVDP---RT   97 (122)
T ss_pred             HHhcCcCCCCEEEEEec---CC
Confidence            99999999999999999   76

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=97.89  E-value=6e-05  Score=53.42  Aligned_cols=62  Identities=32%  Similarity=0.611  Sum_probs=47.7

Q ss_pred             EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCc
Q 014225           65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP  144 (428)
Q Consensus        65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P  144 (428)
                      ++.||++||++|....+.+.++  ++...+  +.++.++.+.....                     ......+++..+|
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~P   55 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAEL--ALLNKG--VKFEAVDVDEDPAL---------------------EKELKRYGVGGVP   55 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHH--HhhCCC--cEEEEEEcCCChHH---------------------hhHHHhCCCcccc
Confidence            4789999999999999999998  333433  88998887766431                     1114568889999


Q ss_pred             eEEEEcC
Q 014225          145 CLVVLQP  151 (428)
Q Consensus       145 ~~~lid~  151 (428)
                      +++++++
T Consensus        56 ~~~~~~~   62 (69)
T cd01659          56 TLVVFGP   62 (69)
T ss_pred             EEEEEeC
Confidence            9999996

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=97.84  E-value=2.3e-05  Score=65.84  Aligned_cols=78  Identities=18%  Similarity=0.326  Sum_probs=45.9

Q ss_pred             cccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHH
Q 014225           56 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN  135 (428)
Q Consensus        56 l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~  135 (428)
                      ++.+..+..++.|..+|||.|+...|.|.++++..+    ++++=.+..|++.+.+..|+                   .
T Consensus        36 l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p----~i~~~~i~rd~~~el~~~~l-------------------t   92 (129)
T PF14595_consen   36 LKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP----NIEVRIILRDENKELMDQYL-------------------T   92 (129)
T ss_dssp             HHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T----TEEEEEE-HHHHHHHTTTTT-------------------T
T ss_pred             HHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC----CCeEEEEEecCChhHHHHHH-------------------h
Confidence            344556788999999999999999999999999853    26666665655543111111                   1


Q ss_pred             hhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          136 RKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       136 ~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                        .|..++|+++++|.   +|+.+.+
T Consensus        93 --~g~~~IP~~I~~d~---~~~~lg~  113 (129)
T PF14595_consen   93 --NGGRSIPTFIFLDK---DGKELGR  113 (129)
T ss_dssp             ---SS--SSEEEEE-T---T--EEEE
T ss_pred             --CCCeecCEEEEEcC---CCCEeEE
Confidence              46789999999998   8876644

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=97.81  E-value=0.00026  Score=59.26  Aligned_cols=89  Identities=9%  Similarity=0.086  Sum_probs=65.5

Q ss_pred             EEEEEec--cCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHH
Q 014225          229 VGLYFSA--RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT  306 (428)
Q Consensus       229 vll~F~a--~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  306 (428)
                      .+|+|-+  .-+|-+.-..-.|.++.++|.+.         ++.++.|++|.+                       ..++
T Consensus        37 ~vl~~~gdp~r~~E~~D~avvleELa~e~~~~---------~v~~akVDiD~~-----------------------~~LA   84 (132)
T PRK11509         37 GVVLLSSDPKRTPEVSDNPVMIGELLREFPDY---------TWQVAIADLEQS-----------------------EAIG   84 (132)
T ss_pred             EEEEeCCCCCcCCccccHHHHHHHHHHHhcCC---------ceEEEEEECCCC-----------------------HHHH
Confidence            4454443  24666777777888999998633         488999988866                       7899


Q ss_pred             HhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhcC
Q 014225          307 KYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNL  364 (428)
Q Consensus       307 ~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~  364 (428)
                      ..|||.++||++++ ++|+.+.+..+       ...       .+++.+.|++++...
T Consensus        85 ~~fgV~siPTLl~F-kdGk~v~~i~G-------~~~-------k~~l~~~I~~~L~~~  127 (132)
T PRK11509         85 DRFGVFRFPATLVF-TGGNYRGVLNG-------IHP-------WAELINLMRGLVEPQ  127 (132)
T ss_pred             HHcCCccCCEEEEE-ECCEEEEEEeC-------cCC-------HHHHHHHHHHHhcCc
Confidence            99999999999999 99999987433       111       256677777776643

>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=0.00011  Score=62.89  Aligned_cols=63  Identities=21%  Similarity=0.296  Sum_probs=57.1

Q ss_pred             cccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecC
Q 014225           41 KDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD  105 (428)
Q Consensus        41 ~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D  105 (428)
                      ..=|| ..+.+|+.|+|+.++||++||.--||-|+.-...-..|+.++++|+++|  ++|++...+
T Consensus        13 siydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~G--l~ILaFPCN   76 (171)
T KOG1651|consen   13 SIYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQG--LEILAFPCN   76 (171)
T ss_pred             ceeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCC--eEEEEeccc
Confidence            34567 8899999999999999999999999999988877779999999999999  999998764

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.75  E-value=0.00063  Score=57.51  Aligned_cols=86  Identities=26%  Similarity=0.469  Sum_probs=61.4

Q ss_pred             ccCCcEEEEEEeccCChhHHhhhHHHH---HHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCC
Q 014225          223 SLVGKTVGLYFSARWCIPCEKFMPKLL---SIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGD  299 (428)
Q Consensus       223 ~~~gk~vll~F~a~wC~~C~~~~~~l~---~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~  299 (428)
                      .-.+|..++.|-.+.|++|.++...+.   ++.+-+..          ++.++.+.+..+..           ..+-.+.
T Consensus        39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~----------hf~~~~l~i~~skp-----------v~f~~g~   97 (182)
T COG2143          39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE----------HFSAYYLNISYSKP-----------VLFKVGD   97 (182)
T ss_pred             CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh----------CeEEEEEEeccCcc-----------eEeecCc
Confidence            345799999999999999999877664   34444443          47777777654321           1111111


Q ss_pred             ----cchhHHHHhcCcCccceEEEECCCCcEEec
Q 014225          300 ----PTIKELTKYFDVQGIPCLVIIGPEGKTVTK  329 (428)
Q Consensus       300 ----d~~~~~~~~~~v~~~P~~~lid~~G~i~~~  329 (428)
                          -...++++.|+|+++|+++++|.+|+.+..
T Consensus        98 kee~~s~~ELa~kf~vrstPtfvFfdk~Gk~Il~  131 (182)
T COG2143          98 KEEKMSTEELAQKFAVRSTPTFVFFDKTGKTILE  131 (182)
T ss_pred             eeeeecHHHHHHHhccccCceEEEEcCCCCEEEe
Confidence                135699999999999999999999988776

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=97.73  E-value=0.00015  Score=54.56  Aligned_cols=63  Identities=16%  Similarity=0.345  Sum_probs=40.4

Q ss_pred             EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHH-h
Q 014225          230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTK-Y  308 (428)
Q Consensus       230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~  308 (428)
                      +..||++|||+|++..+.|.++                ++.+-.++++.+....                   ..+.. .
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~----------------~~~~~~idi~~~~~~~-------------------~~~~~~~   46 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKL----------------GAAYEWVDIEEDEGAA-------------------DRVVSVN   46 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHc----------------CCceEEEeCcCCHhHH-------------------HHHHHHh
Confidence            5678999999999998877543                2344556666543210                   11111 2


Q ss_pred             cCcCccceEEEECCCCcEEec
Q 014225          309 FDVQGIPCLVIIGPEGKTVTK  329 (428)
Q Consensus       309 ~~v~~~P~~~lid~~G~i~~~  329 (428)
                      +++.++|++ ++ .+|+++..
T Consensus        47 ~~~~~vP~i-~~-~~g~~l~~   65 (77)
T TIGR02200        47 NGNMTVPTV-KF-ADGSFLTN   65 (77)
T ss_pred             CCCceeCEE-EE-CCCeEecC
Confidence            588999986 46 57777654

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=97.63  E-value=9.4e-05  Score=75.52  Aligned_cols=78  Identities=24%  Similarity=0.442  Sum_probs=56.2

Q ss_pred             cCCcEEEEEEeccCChhHHhhhHHHH-HHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcch
Q 014225          224 LVGKTVGLYFSARWCIPCEKFMPKLL-SIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI  302 (428)
Q Consensus       224 ~~gk~vll~F~a~wC~~C~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~  302 (428)
                      .++|+|+|+|+|.||--|+.+.+..- +....++-.         ++..+-+++..+.                   +.+
T Consensus       472 ~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~---------~~vlLqaDvT~~~-------------------p~~  523 (569)
T COG4232         472 AKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ---------DVVLLQADVTAND-------------------PAI  523 (569)
T ss_pred             CCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC---------CeEEEEeeecCCC-------------------HHH
Confidence            34569999999999999999877553 444444433         5666665554321                   235


Q ss_pred             hHHHHhcCcCccceEEEECCCCcEEec
Q 014225          303 KELTKYFDVQGIPCLVIIGPEGKTVTK  329 (428)
Q Consensus       303 ~~~~~~~~v~~~P~~~lid~~G~i~~~  329 (428)
                      .++.++|++-+.|++++++++|+-...
T Consensus       524 ~~lLk~~~~~G~P~~~ff~~~g~e~~~  550 (569)
T COG4232         524 TALLKRLGVFGVPTYLFFGPQGSEPEI  550 (569)
T ss_pred             HHHHHHcCCCCCCEEEEECCCCCcCcC
Confidence            778889999999999999999965443

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=97.63  E-value=0.0005  Score=50.93  Aligned_cols=59  Identities=27%  Similarity=0.561  Sum_probs=42.3

Q ss_pred             EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225          230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF  309 (428)
Q Consensus       230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  309 (428)
                      +..|+++|||+|+...+.|.+       .         ++.+..++++.+...                   ..++.+.+
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~-------~---------~i~~~~vdi~~~~~~-------------------~~~~~~~~   46 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTS-------K---------GIAFEEIDVEKDSAA-------------------REEVLKVL   46 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHH-------C---------CCeEEEEeccCCHHH-------------------HHHHHHHh
Confidence            457899999999998877654       2         467777787755321                   13466778


Q ss_pred             CcCccceEEEECCCCcE
Q 014225          310 DVQGIPCLVIIGPEGKT  326 (428)
Q Consensus       310 ~v~~~P~~~lid~~G~i  326 (428)
                      ++.++|++++ +  |++
T Consensus        47 ~~~~vP~~~~-~--~~~   60 (74)
T TIGR02196        47 GQRGVPVIVI-G--HKI   60 (74)
T ss_pred             CCCcccEEEE-C--CEE
Confidence            9999999876 3  555

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=97.58  E-value=0.00023  Score=52.76  Aligned_cols=55  Identities=20%  Similarity=0.537  Sum_probs=40.2

Q ss_pred             EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCc
Q 014225           65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP  144 (428)
Q Consensus        65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P  144 (428)
                      +..|+++||++|+...+.|.+       .+  +.+..++++.+...                    ...+.+.+++.++|
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~-------~~--i~~~~vdi~~~~~~--------------------~~~~~~~~~~~~vP   52 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTS-------KG--IAFEEIDVEKDSAA--------------------REEVLKVLGQRGVP   52 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHH-------CC--CeEEEEeccCCHHH--------------------HHHHHHHhCCCccc
Confidence            467999999999998877654       34  66777777655431                    14567778999999


Q ss_pred             eEEE
Q 014225          145 CLVV  148 (428)
Q Consensus       145 ~~~l  148 (428)
                      ++++
T Consensus        53 ~~~~   56 (74)
T TIGR02196        53 VIVI   56 (74)
T ss_pred             EEEE
Confidence            8876

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>TIGR02180 GRX_euk Glutaredoxin

Probab=97.57  E-value=0.00016  Score=55.55  Aligned_cols=65  Identities=23%  Similarity=0.398  Sum_probs=44.6

Q ss_pred             EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225          230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF  309 (428)
Q Consensus       230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  309 (428)
                      ++.|+++|||+|....+.|.++.  +..          .+.++-|+.+.+.....                  ..+.+.+
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~----------~~~~~~v~~~~~~~~~~------------------~~l~~~~   50 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLN--VKP----------AYEVVELDQLSNGSEIQ------------------DYLEEIT   50 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcC--CCC----------CCEEEEeeCCCChHHHH------------------HHHHHHh
Confidence            46789999999999999988765  221          26777777664433222                  3356667


Q ss_pred             CcCccceEEEECCCCcEE
Q 014225          310 DVQGIPCLVIIGPEGKTV  327 (428)
Q Consensus       310 ~v~~~P~~~lid~~G~i~  327 (428)
                      ++.++|+++ +  +|+.+
T Consensus        51 g~~~vP~v~-i--~g~~i   65 (84)
T TIGR02180        51 GQRTVPNIF-I--NGKFI   65 (84)
T ss_pred             CCCCCCeEE-E--CCEEE
Confidence            899999985 3  45544

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=97.57  E-value=0.00098  Score=54.86  Aligned_cols=74  Identities=11%  Similarity=0.075  Sum_probs=51.3

Q ss_pred             cCCcEEEEEEecc----CChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCC
Q 014225          224 LVGKTVGLYFSAR----WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGD  299 (428)
Q Consensus       224 ~~gk~vll~F~a~----wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~  299 (428)
                      -.+|.++|+|+++    ||.+|+..+.. .++.+-+..          ++-+.+.+++...                   
T Consensus        15 ~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~----------~fv~w~~dv~~~e-------------------   64 (116)
T cd02991          15 QELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINT----------RMLFWACSVAKPE-------------------   64 (116)
T ss_pred             hhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHc----------CEEEEEEecCChH-------------------
Confidence            4579999999999    88899774432 233333332          4655555555332                   


Q ss_pred             cchhHHHHhcCcCccceEEEE---CCCCcEEec
Q 014225          300 PTIKELTKYFDVQGIPCLVII---GPEGKTVTK  329 (428)
Q Consensus       300 d~~~~~~~~~~v~~~P~~~li---d~~G~i~~~  329 (428)
                        ...++..+++.++|++.++   +.+.+++.+
T Consensus        65 --g~~la~~l~~~~~P~~~~l~~~~~~~~vv~~   95 (116)
T cd02991          65 --GYRVSQALRERTYPFLAMIMLKDNRMTIVGR   95 (116)
T ss_pred             --HHHHHHHhCCCCCCEEEEEEecCCceEEEEE
Confidence              2678999999999999999   555566666

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=97.51  E-value=0.00016  Score=73.89  Aligned_cols=75  Identities=23%  Similarity=0.368  Sum_probs=53.2

Q ss_pred             CCCCEEEEEEecCCChhhhhhHHHHH-HHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhh
Q 014225           59 LEGKVTALYFSANWYPPCGNFTGVLV-DVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK  137 (428)
Q Consensus        59 ~~gk~vlv~F~a~wC~~C~~~~p~l~-~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~  137 (428)
                      -++|+|+|+|||.||-.|+..-+..- +.....+-.+    ++.+..|-+.+                 +.. +.++.++
T Consensus       472 ~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~----~vlLqaDvT~~-----------------~p~-~~~lLk~  529 (569)
T COG4232         472 AKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQD----VVLLQADVTAN-----------------DPA-ITALLKR  529 (569)
T ss_pred             CCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCC----eEEEEeeecCC-----------------CHH-HHHHHHH
Confidence            35569999999999999999876554 4444444443    44444454432                 322 3788999


Q ss_pred             cCCCCCceEEEEcCCCCCCCc
Q 014225          138 FDIEGIPCLVVLQPYDDKDDA  158 (428)
Q Consensus       138 ~~v~~~P~~~lid~~~~dG~i  158 (428)
                      |++-+.|+++++++   +|..
T Consensus       530 ~~~~G~P~~~ff~~---~g~e  547 (569)
T COG4232         530 LGVFGVPTYLFFGP---QGSE  547 (569)
T ss_pred             cCCCCCCEEEEECC---CCCc
Confidence            99999999999998   7744

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=97.50  E-value=0.00054  Score=56.36  Aligned_cols=78  Identities=22%  Similarity=0.477  Sum_probs=49.1

Q ss_pred             CCcEEEEEEec-------cCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCcccccc
Q 014225          225 VGKTVGLYFSA-------RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF  297 (428)
Q Consensus       225 ~gk~vll~F~a-------~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~  297 (428)
                      .|++++|.|++       +|||.|.+..|.+.+......+          +..+|.+.+. +...|+.            
T Consensus        18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~----------~~~lv~v~VG-~r~~Wkd------------   74 (119)
T PF06110_consen   18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE----------NARLVYVEVG-DRPEWKD------------   74 (119)
T ss_dssp             TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST----------TEEEEEEE----HHHHC-------------
T ss_pred             CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC----------CceEEEEEcC-CHHHhCC------------
Confidence            35677777774       4999999999999988776432          5778888775 3333432            


Q ss_pred             CCcchhHHHH--hcCcCccceEEEECCCCcEEe
Q 014225          298 GDPTIKELTK--YFDVQGIPCLVIIGPEGKTVT  328 (428)
Q Consensus       298 ~~d~~~~~~~--~~~v~~~P~~~lid~~G~i~~  328 (428)
                         .+..+..  .++++++||++-++..+++..
T Consensus        75 ---p~n~fR~~p~~~l~~IPTLi~~~~~~rL~e  104 (119)
T PF06110_consen   75 ---PNNPFRTDPDLKLKGIPTLIRWETGERLVE  104 (119)
T ss_dssp             ---TTSHHHH--CC---SSSEEEECTSS-EEEH
T ss_pred             ---CCCCceEcceeeeeecceEEEECCCCccch
Confidence               1244444  689999999999977766554

; PDB: 1V9W_A 1WOU_A.

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=97.48  E-value=0.00083  Score=63.19  Aligned_cols=95  Identities=11%  Similarity=0.146  Sum_probs=57.0

Q ss_pred             cCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEc---CC-CH-------------HHHHHH
Q 014225          224 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST---DR-DQ-------------TSFESY  286 (428)
Q Consensus       224 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~---d~-~~-------------~~~~~~  286 (428)
                      -.++.+++.|.-+.||+|+++...+.++.+.-            +++|..+.+   .. +.             ..|..+
T Consensus       115 ~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~g------------~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~  182 (251)
T PRK11657        115 ADAPRIVYVFADPNCPYCKQFWQQARPWVDSG------------KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEY  182 (251)
T ss_pred             CCCCeEEEEEECCCChhHHHHHHHHHHHhhcC------------ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHH
Confidence            34688999999999999999998877655431            244444432   11 11             112211


Q ss_pred             HhcCCc--ccccc--------CCcchhHHHHhcCcCccceEEEECCCCcEEecc
Q 014225          287 FGTMPW--LALPF--------GDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       287 ~~~~~~--~~~~~--------~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      ......  +.-+-        ..+.+..+.+.+|++++|++|+.|.+|.+....
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~  236 (251)
T PRK11657        183 EASGGKLGLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVV  236 (251)
T ss_pred             HHhhhccCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEec
Confidence            111110  00000        111345688899999999999999999875443

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=97.48  E-value=0.00017  Score=65.92  Aligned_cols=65  Identities=17%  Similarity=0.349  Sum_probs=56.9

Q ss_pred             cccccccCc-cccCCCCE-EecccCC--CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEE
Q 014225           37 LLASKDRDY-LLNQHGTQ-VKVSDLE--GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFV  102 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~-v~l~~~~--gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~v  102 (428)
                      .+|..|||+ +.+.+|+. .++.++.  +++++|+|.+-.|||=+..+..+++++++|.+. .++-+|.|
T Consensus        74 ~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~-adFl~VYI  142 (237)
T PF00837_consen   74 KLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV-ADFLIVYI  142 (237)
T ss_pred             eCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh-hheehhhH
Confidence            579999999 99999999 9999994  689999999999999999999999999999986 23555554

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>TIGR02180 GRX_euk Glutaredoxin

Probab=97.48  E-value=0.00026  Score=54.27  Aligned_cols=61  Identities=18%  Similarity=0.350  Sum_probs=41.7

Q ss_pred             EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCc
Q 014225           65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP  144 (428)
Q Consensus        65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P  144 (428)
                      ++.|+++|||+|....+.|.++.  +..   .++++-|+.+.+..                   .....+.+.++..++|
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~---~~~~~~v~~~~~~~-------------------~~~~~l~~~~g~~~vP   56 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLN--VKP---AYEVVELDQLSNGS-------------------EIQDYLEEITGQRTVP   56 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcC--CCC---CCEEEEeeCCCChH-------------------HHHHHHHHHhCCCCCC
Confidence            47899999999999999888765  221   26666665554332                   1114566778889999


Q ss_pred             eEEEEc
Q 014225          145 CLVVLQ  150 (428)
Q Consensus       145 ~~~lid  150 (428)
                      +++ ++
T Consensus        57 ~v~-i~   61 (84)
T TIGR02180        57 NIF-IN   61 (84)
T ss_pred             eEE-EC
Confidence            874 44

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=97.40  E-value=0.00064  Score=51.06  Aligned_cols=63  Identities=14%  Similarity=0.247  Sum_probs=39.1

Q ss_pred             EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHh-hcCCCCC
Q 014225           65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR-KFDIEGI  143 (428)
Q Consensus        65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~-~~~v~~~  143 (428)
                      ++.||++||++|++..+.|.++       +  +.+-.+++|.+...                 .   ..+.+ .++..++
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~-------~--~~~~~idi~~~~~~-----------------~---~~~~~~~~~~~~v   52 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKL-------G--AAYEWVDIEEDEGA-----------------A---DRVVSVNNGNMTV   52 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHc-------C--CceEEEeCcCCHhH-----------------H---HHHHHHhCCCcee
Confidence            5689999999999988877543       3  33445556554320                 0   22222 2578899


Q ss_pred             ceEEEEcCCCCCCCcccc
Q 014225          144 PCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       144 P~~~lid~~~~dG~i~~~  161 (428)
                      |++ +++    +|.++..
T Consensus        53 P~i-~~~----~g~~l~~   65 (77)
T TIGR02200        53 PTV-KFA----DGSFLTN   65 (77)
T ss_pred             CEE-EEC----CCeEecC
Confidence            986 466    5655543

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=97.39  E-value=0.00061  Score=59.06  Aligned_cols=80  Identities=23%  Similarity=0.261  Sum_probs=40.3

Q ss_pred             cCCCCEEEEEEecCCChhhhhhHH-HH--HHHHHHHhcCCCcEEEEEEecCCCh--HHHHHHHhcCCCceeccCChHHHH
Q 014225           58 DLEGKVTALYFSANWYPPCGNFTG-VL--VDVYEELRNNGSDFEVVFVSSDEDL--NAFNNYRACMPWLAVPYSDLETKK  132 (428)
Q Consensus        58 ~~~gk~vlv~F~a~wC~~C~~~~p-~l--~~l~~~~~~~~~~~~ii~vs~D~~~--~~~~~~~~~~~~~~~~~~d~~~~~  132 (428)
                      .-++|+|+|.+.++||..|..+.. .+  .++++.+.++     +|.|-+|.++  +--..|+                .
T Consensus        34 k~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~-----FI~VkvDree~Pdid~~y~----------------~   92 (163)
T PF03190_consen   34 KKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN-----FIPVKVDREERPDIDKIYM----------------N   92 (163)
T ss_dssp             HHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH------EEEEEETTT-HHHHHHHH----------------H
T ss_pred             HhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC-----EEEEEeccccCccHHHHHH----------------H
Confidence            346899999999999999998753 11  1234444333     4444455443  2100000                1


Q ss_pred             HHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          133 ALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       133 ~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      ......|..+.|+++++++   +|+.+..
T Consensus        93 ~~~~~~~~gGwPl~vfltP---dg~p~~~  118 (163)
T PF03190_consen   93 AVQAMSGSGGWPLTVFLTP---DGKPFFG  118 (163)
T ss_dssp             HHHHHHS---SSEEEEE-T---TS-EEEE
T ss_pred             HHHHhcCCCCCCceEEECC---CCCeeee
Confidence            1112237889999999999   9988754

; PDB: 3IRA_A.

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.37  E-value=0.00028  Score=62.87  Aligned_cols=91  Identities=20%  Similarity=0.400  Sum_probs=67.5

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      +.+.++|.||+.|.|-|..+.|.+.++..+|...         ++.+-.|.+..=                       .+
T Consensus       143 k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~---------~lkFGkvDiGrf-----------------------pd  190 (265)
T KOG0914|consen  143 KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNN---------LLKFGKVDIGRF-----------------------PD  190 (265)
T ss_pred             CceEEEEEEEeecChhhcccccccHHHHHHhCCC---------CCcccceeeccC-----------------------cC
Confidence            3468999999999999999999999999999865         677777766543                       34


Q ss_pred             HHHhcCc------CccceEEEECCCCcEEeccccchhhcc-cccCCCCChHHH
Q 014225          305 LTKYFDV------QGIPCLVIIGPEGKTVTKQGRNLINLY-QENAYPFTEAKL  350 (428)
Q Consensus       305 ~~~~~~v------~~~P~~~lid~~G~i~~~~~~~~~~~~-g~~~~p~~~~~~  350 (428)
                      .+..|+|      +..||++++ .+|+-+.+.  ..+..- .+..|||+++.+
T Consensus       191 ~a~kfris~s~~srQLPT~ilF-q~gkE~~Rr--P~vd~~gra~s~~fSeenv  240 (265)
T KOG0914|consen  191 VAAKFRISLSPGSRQLPTYILF-QKGKEVSRR--PDVDVKGRAVSFPFSEENV  240 (265)
T ss_pred             hHHheeeccCcccccCCeEEEE-ccchhhhcC--ccccccCCcccccccHHHH
Confidence            5566666      578999999 888877663  333333 344578887643

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=97.35  E-value=0.00044  Score=56.87  Aligned_cols=74  Identities=22%  Similarity=0.470  Sum_probs=44.6

Q ss_pred             CCCEEEEEEecC-------CChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHH
Q 014225           60 EGKVTALYFSAN-------WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKK  132 (428)
Q Consensus        60 ~gk~vlv~F~a~-------wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~  132 (428)
                      .|++++|.|+++       |||.|+...|.+++......+.   ..+|.|.+... ..|+              +.+..-
T Consensus        18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~---~~lv~v~VG~r-~~Wk--------------dp~n~f   79 (119)
T PF06110_consen   18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPEN---ARLVYVEVGDR-PEWK--------------DPNNPF   79 (119)
T ss_dssp             TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STT---EEEEEEE---H-HHHC---------------TTSHH
T ss_pred             CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCC---ceEEEEEcCCH-HHhC--------------CCCCCc
Confidence            467888888864       9999999999999988885443   67777765322 2121              111001


Q ss_pred             HHHhhcCCCCCceEEEEcC
Q 014225          133 ALNRKFDIEGIPCLVVLQP  151 (428)
Q Consensus       133 ~l~~~~~v~~~P~~~lid~  151 (428)
                      +.-..+++.++||++-++.
T Consensus        80 R~~p~~~l~~IPTLi~~~~   98 (119)
T PF06110_consen   80 RTDPDLKLKGIPTLIRWET   98 (119)
T ss_dssp             HH--CC---SSSEEEECTS
T ss_pred             eEcceeeeeecceEEEECC
Confidence            2223689999999999986

; PDB: 1V9W_A 1WOU_A.

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=97.31  E-value=0.0043  Score=46.87  Aligned_cols=58  Identities=24%  Similarity=0.433  Sum_probs=40.5

Q ss_pred             eccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhcCcCc
Q 014225          234 SARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQG  313 (428)
Q Consensus       234 ~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  313 (428)
                      ++++|+.|......++++...+.            +.+=.+.. .+.                      .++ ..|||.+
T Consensus         6 ~~~~C~~C~~~~~~~~~~~~~~~------------i~~ei~~~-~~~----------------------~~~-~~ygv~~   49 (76)
T PF13192_consen    6 FSPGCPYCPELVQLLKEAAEELG------------IEVEIIDI-EDF----------------------EEI-EKYGVMS   49 (76)
T ss_dssp             ECSSCTTHHHHHHHHHHHHHHTT------------EEEEEEET-TTH----------------------HHH-HHTT-SS
T ss_pred             eCCCCCCcHHHHHHHHHHHHhcC------------CeEEEEEc-cCH----------------------HHH-HHcCCCC
Confidence            67789999988888888877763            33333333 231                      455 8999999


Q ss_pred             cceEEEECCCCcEEecc
Q 014225          314 IPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       314 ~P~~~lid~~G~i~~~~  330 (428)
                      +|++ +|  ||+++..+
T Consensus        50 vPal-vI--ng~~~~~G   63 (76)
T PF13192_consen   50 VPAL-VI--NGKVVFVG   63 (76)
T ss_dssp             SSEE-EE--TTEEEEES
T ss_pred             CCEE-EE--CCEEEEEe
Confidence            9999 45  48888764

...

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=97.30  E-value=0.0037  Score=58.10  Aligned_cols=88  Identities=20%  Similarity=0.262  Sum_probs=53.6

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC-----C--------------HHHHHH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-----D--------------QTSFES  285 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~-----~--------------~~~~~~  285 (428)
                      .|+.+++.|..+.||+|+++.+.+.++.+    .         ++.|..+....     .              ...+..
T Consensus       106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~---------~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~  172 (232)
T PRK10877        106 QEKHVITVFTDITCGYCHKLHEQMKDYNA----L---------GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDD  172 (232)
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHhc----C---------CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHH
Confidence            36788999999999999999988876543    2         35555443221     1              011222


Q ss_pred             HHhcCCcc--ccccCCcchhHHHHhcCcCccceEEEECCCCcEE
Q 014225          286 YFGTMPWL--ALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV  327 (428)
Q Consensus       286 ~~~~~~~~--~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~  327 (428)
                      ........  ......+...++++.+||+++|+++ + +||+++
T Consensus       173 ~~~~~~~~~~~c~~~v~~~~~la~~lgi~gTPtiv-~-~~G~~~  214 (232)
T PRK10877        173 AMKGKDVSPASCDVDIADHYALGVQFGVQGTPAIV-L-SNGTLV  214 (232)
T ss_pred             HHcCCCCCcccccchHHHhHHHHHHcCCccccEEE-E-cCCeEe
Confidence            22211100  0111223567889999999999988 5 678776

>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=97.27  E-value=0.0016  Score=56.15  Aligned_cols=114  Identities=18%  Similarity=0.320  Sum_probs=81.9

Q ss_pred             ccccccCc-cccCCCCEEecccCCCCEEEEEEe--cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCCh--HHHH
Q 014225           38 LASKDRDY-LLNQHGTQVKVSDLEGKVTALYFS--ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL--NAFN  112 (428)
Q Consensus        38 ~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~--a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~--~~~~  112 (428)
                      +|+.+|+| .-+..| .+++.++-|.-+.|.|.  |..-|-|..++..+.+++-+|.+++  +..|++|+|..+  ..|-
T Consensus         8 lgd~~PNfea~Tt~g-~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRn--vKlialS~d~vesH~~Wi   84 (224)
T KOG0854|consen    8 LGDTVPNFEADTTVG-KIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRN--VKLIALSVDDVESHKDWI   84 (224)
T ss_pred             ccCcCCCcccccccc-ceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcC--ceEEEeehhhHHHHHHHH
Confidence            79999999 666666 59999999998888887  6778999999999999999999998  999999998643  3333


Q ss_pred             HHH----hcCCC-ceecc-CChHHHHHHHhhcCCC--------C----CceEEEEcCCCCCCCcc
Q 014225          113 NYR----ACMPW-LAVPY-SDLETKKALNRKFDIE--------G----IPCLVVLQPYDDKDDAT  159 (428)
Q Consensus       113 ~~~----~~~~~-~~~~~-~d~~~~~~l~~~~~v~--------~----~P~~~lid~~~~dG~i~  159 (428)
                      +-+    +..+- ..+|. +|..  .+++-.|++-        +    .-..++|++   +.++.
T Consensus        85 ~DIks~~~~~~~~~~yPIIaD~~--rela~~l~MlD~~e~~~~~~~~T~Ravfvi~p---dkKir  144 (224)
T KOG0854|consen   85 KDIKSYAKVKNHSVPYPIIADPN--RELAFLLNMLDPEEKKNIGDGKTVRAVFVIDP---DKKIR  144 (224)
T ss_pred             HHHHHHHhccCCCCCCCeecCCc--hhhhhhhcccCHhHcCCCCCCceEEEEEEECC---CceEE
Confidence            333    22220 12222 2332  6777777651        2    336788888   77664

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=97.22  E-value=0.0022  Score=49.49  Aligned_cols=66  Identities=18%  Similarity=0.308  Sum_probs=45.5

Q ss_pred             EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225          230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF  309 (428)
Q Consensus       230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  309 (428)
                      +..|+.+|||+|.+....|+++..++.           ++.+..++++.+..+.                   .++.+.+
T Consensus         3 v~iy~~~~C~~C~~a~~~L~~l~~~~~-----------~i~~~~idi~~~~~~~-------------------~el~~~~   52 (85)
T PRK11200          3 VVIFGRPGCPYCVRAKELAEKLSEERD-----------DFDYRYVDIHAEGISK-------------------ADLEKTV   52 (85)
T ss_pred             EEEEeCCCChhHHHHHHHHHhhccccc-----------CCcEEEEECCCChHHH-------------------HHHHHHH
Confidence            567889999999999999999886643           4677777777543211                   2333333


Q ss_pred             --CcCccceEEEECCCCcEEe
Q 014225          310 --DVQGIPCLVIIGPEGKTVT  328 (428)
Q Consensus       310 --~v~~~P~~~lid~~G~i~~  328 (428)
                        ++..+|+++ +  +|+.+.
T Consensus        53 ~~~~~~vP~if-i--~g~~ig   70 (85)
T PRK11200         53 GKPVETVPQIF-V--DQKHIG   70 (85)
T ss_pred             CCCCCcCCEEE-E--CCEEEc
Confidence              458899986 4  566653

>cd02340 ZZ_NBR1_like Zinc finger, ZZ type

Probab=97.16  E-value=0.00022  Score=47.42  Aligned_cols=30  Identities=33%  Similarity=0.837  Sum_probs=27.7

Q ss_pred             ccccccCCCCceeEeccCC-CCCCccccccc
Q 014225          390 ICCDCDEQGSGWAYQCLEC-GYEVHPKCVRA  419 (428)
Q Consensus       390 ~c~~C~~~g~~~~~~~~~~-~~~~~~~~~~~  419 (428)
                      .|++|++...|-.|+|..| +|||+..|-..
T Consensus         2 ~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~~   32 (43)
T cd02340           2 ICDGCQGPIVGVRYKCLVCPDYDLCESCEAK   32 (43)
T ss_pred             CCCCCCCcCcCCeEECCCCCCccchHHhhCc
Confidence            6999999999999999999 89999999754

Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.16  E-value=0.018  Score=60.10  Aligned_cols=71  Identities=11%  Similarity=0.202  Sum_probs=49.3

Q ss_pred             cccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcc
Q 014225          222 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT  301 (428)
Q Consensus       222 ~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~  301 (428)
                      ..+.++.-+..|..+.||+|......+++++..           .+++..-.|  |...                     
T Consensus       112 ~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~-----------~~~i~~~~i--d~~~---------------------  157 (517)
T PRK15317        112 KALDGDFHFETYVSLSCHNCPDVVQALNLMAVL-----------NPNITHTMI--DGAL---------------------  157 (517)
T ss_pred             HhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHh-----------CCCceEEEE--Echh---------------------
Confidence            344556678889999999999877777666653           234555555  4322                     


Q ss_pred             hhHHHHhcCcCccceEEEECCCCcEEec
Q 014225          302 IKELTKYFDVQGIPCLVIIGPEGKTVTK  329 (428)
Q Consensus       302 ~~~~~~~~~v~~~P~~~lid~~G~i~~~  329 (428)
                      ..++++.|++.++|++|+   +|+.+..
T Consensus       158 ~~~~~~~~~v~~VP~~~i---~~~~~~~  182 (517)
T PRK15317        158 FQDEVEARNIMAVPTVFL---NGEEFGQ  182 (517)
T ss_pred             CHhHHHhcCCcccCEEEE---CCcEEEe
Confidence            378899999999999975   3444443

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.12  E-value=0.0026  Score=53.84  Aligned_cols=86  Identities=20%  Similarity=0.318  Sum_probs=59.8

Q ss_pred             cCCCCEEEEEEecCCChhhhhhHHHHH---HHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCC---hHHH
Q 014225           58 DLEGKVTALYFSANWYPPCGNFTGVLV---DVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSD---LETK  131 (428)
Q Consensus        58 ~~~gk~vlv~F~a~wC~~C~~~~p~l~---~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d---~~~~  131 (428)
                      .-+||..++.|-.+.|++|..+-..+.   ++.+-++++   +.++.+.+.....           ..+-.++   ....
T Consensus        39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~h---f~~~~l~i~~skp-----------v~f~~g~kee~~s~  104 (182)
T COG2143          39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEH---FSAYYLNISYSKP-----------VLFKVGDKEEKMST  104 (182)
T ss_pred             CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhC---eEEEEEEeccCcc-----------eEeecCceeeeecH
Confidence            346899999999999999998765543   356666665   7777776533321           0000111   1233


Q ss_pred             HHHHhhcCCCCCceEEEEcCCCCCCCccc
Q 014225          132 KALNRKFDIEGIPCLVVLQPYDDKDDATL  160 (428)
Q Consensus       132 ~~l~~~~~v~~~P~~~lid~~~~dG~i~~  160 (428)
                      .++++.|+++++|+++++|.   +|+.+.
T Consensus       105 ~ELa~kf~vrstPtfvFfdk---~Gk~Il  130 (182)
T COG2143         105 EELAQKFAVRSTPTFVFFDK---TGKTIL  130 (182)
T ss_pred             HHHHHHhccccCceEEEEcC---CCCEEE
Confidence            79999999999999999999   886654

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=97.02  E-value=0.0041  Score=56.23  Aligned_cols=95  Identities=18%  Similarity=0.202  Sum_probs=56.0

Q ss_pred             ecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC--C--------------HHH
Q 014225          219 VPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR--D--------------QTS  282 (428)
Q Consensus       219 v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~--~--------------~~~  282 (428)
                      +.+..-.++++++.|+.+.||+|+++.+.+.+    ....        -.+.++.+....  +              .+.
T Consensus        70 i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~--------v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a  137 (197)
T cd03020          70 IVYGKGNGKRVVYVFTDPDCPYCRKLEKELKP----NADG--------VTVRIFPVPILGLPDSTAKAAAIWCAKDRAKA  137 (197)
T ss_pred             eEEcCCCCCEEEEEEECCCCccHHHHHHHHhh----ccCc--------eEEEEEEcCcCCCccHHHHHHHhhcccCHHHH
Confidence            33433447889999999999999999998876    1111        134444444432  1              112


Q ss_pred             HHHHHhcCCcc-cc---ccCCcchhHHHHhcCcCccceEEEECCCCcEE
Q 014225          283 FESYFGTMPWL-AL---PFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV  327 (428)
Q Consensus       283 ~~~~~~~~~~~-~~---~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~  327 (428)
                      |.+........ ..   ....+.+..+++.+||+++|+++ + .+|+++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~gi~gtPtii-~-~~G~~~  184 (197)
T cd03020         138 WTDAMSGGKVPPPAASCDNPVAANLALGRQLGVNGTPTIV-L-ADGRVV  184 (197)
T ss_pred             HHHHHhCCCCCCCccccCchHHHHHHHHHHcCCCcccEEE-E-CCCeEe
Confidence            22222221110 11   11223566889999999999997 5 567764

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.95  E-value=0.00064  Score=61.12  Aligned_cols=70  Identities=19%  Similarity=0.319  Sum_probs=55.8

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      +++.+++.||++||.+|.++...+..+.+.++           ++.++.+..+..                       .+
T Consensus        16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~-----------~~~~~k~~a~~~-----------------------~e   61 (227)
T KOG0911|consen   16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK-----------NAQFLKLEAEEF-----------------------PE   61 (227)
T ss_pred             ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh-----------hheeeeehhhhh-----------------------hH
Confidence            57889999999999999999999998888773           345555554432                       78


Q ss_pred             HHHhcCcCccceEEEECCCCcEEec
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTK  329 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~  329 (428)
                      ++..+.+...|+++++ ..|+.+.+
T Consensus        62 is~~~~v~~vp~~~~~-~~~~~v~~   85 (227)
T KOG0911|consen   62 ISNLIAVEAVPYFVFF-FLGEKVDR   85 (227)
T ss_pred             HHHHHHHhcCceeeee-ecchhhhh
Confidence            8999999999999888 77766655

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=96.95  E-value=0.0038  Score=51.35  Aligned_cols=66  Identities=11%  Similarity=0.099  Sum_probs=48.7

Q ss_pred             cCCCCEEEEEEecC----CChhhhhhH--HHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHH
Q 014225           58 DLEGKVTALYFSAN----WYPPCGNFT--GVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETK  131 (428)
Q Consensus        58 ~~~gk~vlv~F~a~----wC~~C~~~~--p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~  131 (428)
                      .-.+|.++|+++++    ||..|+..+  |.+.+..+   . +  +.+.+.++...+.                      
T Consensus        14 k~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln---~-~--fv~w~~dv~~~eg----------------------   65 (116)
T cd02991          14 KQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN---T-R--MLFWACSVAKPEG----------------------   65 (116)
T ss_pred             HhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH---c-C--EEEEEEecCChHH----------------------
Confidence            34679999999999    999998776  65555543   2 2  5555554443322                      


Q ss_pred             HHHHhhcCCCCCceEEEEcC
Q 014225          132 KALNRKFDIEGIPCLVVLQP  151 (428)
Q Consensus       132 ~~l~~~~~v~~~P~~~lid~  151 (428)
                      .+++..+++.++|++++|.+
T Consensus        66 ~~la~~l~~~~~P~~~~l~~   85 (116)
T cd02991          66 YRVSQALRERTYPFLAMIML   85 (116)
T ss_pred             HHHHHHhCCCCCCEEEEEEe
Confidence            78999999999999999975

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=96.89  E-value=0.042  Score=57.37  Aligned_cols=65  Identities=14%  Similarity=0.250  Sum_probs=45.0

Q ss_pred             ccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCc
Q 014225          221 VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP  300 (428)
Q Consensus       221 l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d  300 (428)
                      +..+.++.-+..|..+.||+|+.....++++...           .+++..-.  +|...                    
T Consensus       112 ~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~-----------~p~i~~~~--id~~~--------------------  158 (515)
T TIGR03140       112 IRRLNGPLHFETYVSLTCQNCPDVVQALNQMALL-----------NPNISHTM--IDGAL--------------------  158 (515)
T ss_pred             HHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHh-----------CCCceEEE--EEchh--------------------
Confidence            3445566678889999999998766666555544           23455443  34322                    


Q ss_pred             chhHHHHhcCcCccceEEE
Q 014225          301 TIKELTKYFDVQGIPCLVI  319 (428)
Q Consensus       301 ~~~~~~~~~~v~~~P~~~l  319 (428)
                       ..++++.|++.++|++|+
T Consensus       159 -~~~~~~~~~v~~VP~~~i  176 (515)
T TIGR03140       159 -FQDEVEALGIQGVPAVFL  176 (515)
T ss_pred             -CHHHHHhcCCcccCEEEE
Confidence             378899999999999986

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=96.81  E-value=0.0071  Score=43.21  Aligned_cols=59  Identities=24%  Similarity=0.325  Sum_probs=40.8

Q ss_pred             EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225          230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF  309 (428)
Q Consensus       230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  309 (428)
                      ++.|+.+|||+|.+....|.+       .         ++.+-.++++.+.+.                   ..++.+..
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~-------~---------~i~y~~~dv~~~~~~-------------------~~~l~~~~   45 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDE-------K---------GIPYEEVDVDEDEEA-------------------REELKELS   45 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHH-------T---------TBEEEEEEGGGSHHH-------------------HHHHHHHH
T ss_pred             cEEEEcCCCcCHHHHHHHHHH-------c---------CCeeeEcccccchhH-------------------HHHHHHHc
Confidence            467889999999998777632       2         567777777755321                   24455555


Q ss_pred             CcCccceEEEECCCCcE
Q 014225          310 DVQGIPCLVIIGPEGKT  326 (428)
Q Consensus       310 ~v~~~P~~~lid~~G~i  326 (428)
                      |..++|++++   +|+.
T Consensus        46 g~~~~P~v~i---~g~~   59 (60)
T PF00462_consen   46 GVRTVPQVFI---DGKF   59 (60)
T ss_dssp             SSSSSSEEEE---TTEE
T ss_pred             CCCccCEEEE---CCEE
Confidence            9999999985   5544

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like

Probab=96.78  E-value=0.016  Score=52.15  Aligned_cols=113  Identities=18%  Similarity=0.360  Sum_probs=79.8

Q ss_pred             cCCCCccc-CCCCCceecccc-cCCcE-EEEEEe------ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEE
Q 014225          204 NHDRGYLL-GHPPDEKVPVSS-LVGKT-VGLYFS------ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV  274 (428)
Q Consensus       204 ~~~p~f~l-~~~g~~~v~l~~-~~gk~-vll~F~------a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~i  274 (428)
                      .-..++.+ ..+|  +++|.+ |.|+- ++|+.+      ..-|+.|...+..+.-....+.++         ++.++.|
T Consensus        44 ~v~~~Y~F~g~~G--~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~r---------d~tfa~v  112 (211)
T PF05988_consen   44 EVDKDYVFDGPDG--PVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHAR---------DTTFAVV  112 (211)
T ss_pred             cCCCCeEEeCCCC--cccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhC---------CceEEEE
Confidence            33446778 5555  588988 56753 333322      235999999999997777777766         7899999


Q ss_pred             EcCCCHHHHHHHHhcCCccccccCCcchhHHHHhcCc-----CccceEEEECCC-CcEEec
Q 014225          275 STDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDV-----QGIPCLVIIGPE-GKTVTK  329 (428)
Q Consensus       275 s~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v-----~~~P~~~lid~~-G~i~~~  329 (428)
                      |-. ..+++..|.+.|+|- ||..+.....+...|++     ...|.+-++=++ |+|...
T Consensus       113 Sra-P~~~i~afk~rmGW~-~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~svF~Rdg~~VfhT  171 (211)
T PF05988_consen  113 SRA-PLEKIEAFKRRMGWT-FPWYSSYGSDFNYDFGVSFDEGGEMPGLSVFLRDGGRVFHT  171 (211)
T ss_pred             eCC-CHHHHHHHHHhcCCC-ceEEEcCCCcccccccceeccCCCceeEEEEEEcCCEEEEE
Confidence            865 788999999999987 88877766777778887     456655444344 455544

>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type

Probab=96.68  E-value=0.00096  Score=44.74  Aligned_cols=30  Identities=37%  Similarity=1.005  Sum_probs=26.2

Q ss_pred             ccccccCCC-CceeEeccCC-CCCCccccccc
Q 014225          390 ICCDCDEQG-SGWAYQCLEC-GYEVHPKCVRA  419 (428)
Q Consensus       390 ~c~~C~~~g-~~~~~~~~~~-~~~~~~~~~~~  419 (428)
                      .|++|++.. .|-.|+|..| +|||+..|-..
T Consensus         2 ~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~~   33 (45)
T cd02339           2 ICDTCRKQGIIGIRWKCAECPNYDLCTTCYHG   33 (45)
T ss_pred             CCCCCCCCCcccCeEECCCCCCccchHHHhCC
Confidence            699999644 5999999999 89999999764

Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=96.56  E-value=0.018  Score=52.07  Aligned_cols=95  Identities=18%  Similarity=0.203  Sum_probs=56.6

Q ss_pred             EecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCCh----------------HHHHHHHhc
Q 014225           54 VKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL----------------NAFNNYRAC  117 (428)
Q Consensus        54 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~----------------~~~~~~~~~  117 (428)
                      +.+..-.+++.++.|..+.||+|+++.+.+.+     ...+..+.++.+.+....                +.|.++...
T Consensus        70 i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~-----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~  144 (197)
T cd03020          70 IVYGKGNGKRVVYVFTDPDCPYCRKLEKELKP-----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSG  144 (197)
T ss_pred             eEEcCCCCCEEEEEEECCCCccHHHHHHHHhh-----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhC
Confidence            44444457899999999999999999988876     122323555555543311                112222211


Q ss_pred             CCC---ceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCc
Q 014225          118 MPW---LAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDA  158 (428)
Q Consensus       118 ~~~---~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i  158 (428)
                      ...   ......+.+....+++.+|+.++|+++ +.    ||+.
T Consensus       145 ~~~~~~~~~~~~~i~~~~~l~~~~gi~gtPtii-~~----~G~~  183 (197)
T cd03020         145 GKVPPPAASCDNPVAANLALGRQLGVNGTPTIV-LA----DGRV  183 (197)
T ss_pred             CCCCCCccccCchHHHHHHHHHHcCCCcccEEE-EC----CCeE
Confidence            111   001112334557899999999999987 54    5654

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>cd02249 ZZ Zinc finger, ZZ type

Probab=96.47  E-value=0.0015  Score=44.15  Aligned_cols=33  Identities=24%  Similarity=0.684  Sum_probs=29.4

Q ss_pred             cccccccCCCCceeEeccCC-CCCCccccccccC
Q 014225          389 FICCDCDEQGSGWAYQCLEC-GYEVHPKCVRAVD  421 (428)
Q Consensus       389 ~~c~~C~~~g~~~~~~~~~~-~~~~~~~~~~~~~  421 (428)
                      |.|++|++...|-.|+|..| +|||+..|-....
T Consensus         1 ~~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~~~   34 (46)
T cd02249           1 YSCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKGK   34 (46)
T ss_pred             CCCcCCCCCCcCCEEECCCCCCCcCHHHHHCcCc
Confidence            57999999889999999999 5999999987653

Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=96.46  E-value=0.013  Score=55.40  Aligned_cols=72  Identities=14%  Similarity=0.154  Sum_probs=55.1

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      ++.+|||.||-+.++.|..+...|..|+.+|.           .++|+-|.....                       . 
T Consensus       145 ~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp-----------~vKFvkI~a~~~-----------------------~-  189 (265)
T PF02114_consen  145 KSTWVVVHIYEPGFPRCEIMNSCLECLARKYP-----------EVKFVKIRASKC-----------------------P-  189 (265)
T ss_dssp             TT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T-----------TSEEEEEEECGC-----------------------C-
T ss_pred             CCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC-----------ceEEEEEehhcc-----------------------C-
Confidence            35689999999999999999999999999987           468888876522                       1 


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecccc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~~~  332 (428)
                      +...|....+|+++++ ++|.++....+
T Consensus       190 ~~~~f~~~~LPtllvY-k~G~l~~~~V~  216 (265)
T PF02114_consen  190 ASENFPDKNLPTLLVY-KNGDLIGNFVG  216 (265)
T ss_dssp             TTTTS-TTC-SEEEEE-ETTEEEEEECT
T ss_pred             cccCCcccCCCEEEEE-ECCEEEEeEEe
Confidence            4567889999999999 89998887543

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []

Probab=96.45  E-value=0.038  Score=50.37  Aligned_cols=116  Identities=9%  Similarity=0.122  Sum_probs=79.3

Q ss_pred             cCCCCcccCCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHH
Q 014225          204 NHDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSF  283 (428)
Q Consensus       204 ~~~p~f~l~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~  283 (428)
                      .+.|.+.+   |. ...+.+..|+++||.+-..+|..|...+..|+.|..++....      ..++.++.|+--.....+
T Consensus         8 ~~~p~W~i---~~-~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g------~~~I~f~vVN~~~~~s~~   77 (238)
T PF04592_consen    8 KPPPPWKI---GG-QDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEG------LSNISFMVVNHQGEHSRL   77 (238)
T ss_pred             CCCCCceE---CC-chHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCC------CCceEEEEEcCCCcchhH
Confidence            34566654   22 345778899999999999999999999999999999987651      347778877754333322


Q ss_pred             H-HHHhcCCccccccCC--cchhHHHHhcCcCccceEEEECCCCcEEecc
Q 014225          284 E-SYFGTMPWLALPFGD--PTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       284 ~-~~~~~~~~~~~~~~~--d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      . ..++..--..||+..  ....++...++-..- -++|+|+-|++.+.-
T Consensus        78 ~~~~l~~r~~~~ipVyqq~~~q~dvW~~L~G~kd-D~~iyDRCGrL~~~i  126 (238)
T PF04592_consen   78 KYWELKRRVSEHIPVYQQDENQPDVWELLNGSKD-DFLIYDRCGRLTYHI  126 (238)
T ss_pred             HHHHHHHhCCCCCceecCCccccCHHHHhCCCcC-cEEEEeccCcEEEEe
Confidence            2 223333224577753  244667777764432 588999999999874

It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=96.45  E-value=0.0067  Score=47.18  Aligned_cols=81  Identities=20%  Similarity=0.224  Sum_probs=48.2

Q ss_pred             EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEc--CCC-----HHHHHHHHh--cCC-ccccccCC
Q 014225          230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST--DRD-----QTSFESYFG--TMP-WLALPFGD  299 (428)
Q Consensus       230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~--d~~-----~~~~~~~~~--~~~-~~~~~~~~  299 (428)
                      +..|+.+.||+|....+.+.++......          ++.+....+  ...     ....+....  ... ...+....
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   70 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADDG----------GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEAL   70 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcCC----------cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHH
Confidence            4678899999999999999988744433          466666654  222     111111110  000 00000000


Q ss_pred             cchhHHHHhcCcCccceEEEEC
Q 014225          300 PTIKELTKYFDVQGIPCLVIIG  321 (428)
Q Consensus       300 d~~~~~~~~~~v~~~P~~~lid  321 (428)
                       .....+..+|+.++|++++-|
T Consensus        71 -~~~~~~~~~g~~g~Pt~v~~~   91 (98)
T cd02972          71 -ADTALARALGVTGTPTFVVNG   91 (98)
T ss_pred             -HHHHHHHHcCCCCCCEEEECC
Confidence             456788899999999998876

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=96.36  E-value=0.016  Score=41.33  Aligned_cols=55  Identities=18%  Similarity=0.332  Sum_probs=38.3

Q ss_pred             EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCc
Q 014225           65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP  144 (428)
Q Consensus        65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P  144 (428)
                      ++.|+.+||++|.+....|       ...|  +..-.++++.+.+                    ..+.+.+..+..++|
T Consensus         1 V~vy~~~~C~~C~~~~~~L-------~~~~--i~y~~~dv~~~~~--------------------~~~~l~~~~g~~~~P   51 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFL-------DEKG--IPYEEVDVDEDEE--------------------AREELKELSGVRTVP   51 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHH-------HHTT--BEEEEEEGGGSHH--------------------HHHHHHHHHSSSSSS
T ss_pred             cEEEEcCCCcCHHHHHHHH-------HHcC--CeeeEcccccchh--------------------HHHHHHHHcCCCccC
Confidence            4678999999999976655       3344  6666677766643                    115555556889999


Q ss_pred             eEEE
Q 014225          145 CLVV  148 (428)
Q Consensus       145 ~~~l  148 (428)
                      ++++
T Consensus        52 ~v~i   55 (60)
T PF00462_consen   52 QVFI   55 (60)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8775

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.35  E-value=0.011  Score=45.00  Aligned_cols=63  Identities=21%  Similarity=0.322  Sum_probs=42.0

Q ss_pred             EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225          230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF  309 (428)
Q Consensus       230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  309 (428)
                      ++.|.++|||+|......|.++..              .+.++-|+.+.+..+.+                  ..+.+..
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~--------------~~~~~~v~~~~~~~~~~------------------~~~~~~~   49 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGV--------------KPAVVELDQHEDGSEIQ------------------DYLQELT   49 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCC--------------CcEEEEEeCCCChHHHH------------------HHHHHHh
Confidence            467889999999999888877543              24566666664422211                  3455667


Q ss_pred             CcCccceEEEECCCCcEE
Q 014225          310 DVQGIPCLVIIGPEGKTV  327 (428)
Q Consensus       310 ~v~~~P~~~lid~~G~i~  327 (428)
                      |..++|.++ +  +|+.+
T Consensus        50 g~~~~P~v~-~--~g~~i   64 (82)
T cd03419          50 GQRTVPNVF-I--GGKFI   64 (82)
T ss_pred             CCCCCCeEE-E--CCEEE
Confidence            899999974 4  35554

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=96.33  E-value=0.011  Score=45.66  Aligned_cols=40  Identities=18%  Similarity=0.262  Sum_probs=31.5

Q ss_pred             EEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCC
Q 014225           64 TALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED  107 (428)
Q Consensus        64 vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~  107 (428)
                      -++.|+.+||++|.+....|+++..+++  +  +.+..++++.+
T Consensus         2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~--~--i~~~~idi~~~   41 (85)
T PRK11200          2 FVVIFGRPGCPYCVRAKELAEKLSEERD--D--FDYRYVDIHAE   41 (85)
T ss_pred             EEEEEeCCCChhHHHHHHHHHhhccccc--C--CcEEEEECCCC
Confidence            3678999999999999999998887652  3  66777777654

>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex

Probab=96.31  E-value=0.047  Score=51.25  Aligned_cols=133  Identities=15%  Similarity=0.174  Sum_probs=78.2

Q ss_pred             CCCCccc-CCCCCceecccc-cCCcEEEEEEec-cCChhHHhhhHHHH-HHHHHHHhhhhhcCCCCCCEEEEEEEcCCCH
Q 014225          205 HDRGYLL-GHPPDEKVPVSS-LVGKTVGLYFSA-RWCIPCEKFMPKLL-SIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ  280 (428)
Q Consensus       205 ~~p~f~l-~~~g~~~v~l~~-~~gk~vll~F~a-~wC~~C~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~  280 (428)
                      ..|++.. +++|+ .+++.+ ++||+.||..++ .|-.   .+...+. ....+|...      .+..+++|-|++..+.
T Consensus       100 yFP~l~g~tL~g~-~~~~~~~l~gkvSlV~l~s~~~ge---~~~~sw~~p~~~~~~~~------~~~~~q~v~In~~e~~  169 (252)
T PF05176_consen  100 YFPNLQGKTLAGN-KVDTTDLLRGKVSLVCLFSSAWGE---EMVDSWTSPFLEDFLQE------PYGRVQIVEINLIENW  169 (252)
T ss_pred             cCCCCccccCCCC-CcccccccCCceEEEEEeehHHHH---HHHHHHhhHHHHHHhhC------CCCceEEEEEecchHH
Confidence            4688888 88888 777766 689986655554 4433   3333222 233344332      1227999999987543


Q ss_pred             H-H-HHHHH-hcC----C---ccccccCCc--chhHHHHhcCcC--ccceEEEECCCCcEEeccccchhhcccccCCCCC
Q 014225          281 T-S-FESYF-GTM----P---WLALPFGDP--TIKELTKYFDVQ--GIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFT  346 (428)
Q Consensus       281 ~-~-~~~~~-~~~----~---~~~~~~~~d--~~~~~~~~~~v~--~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~  346 (428)
                      - . +...+ ..+    +   |-.+-+..+  ....+.+.+++.  -+..+||||.+|+|+....|           +.+
T Consensus       170 ~k~~l~~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWagsG-----------~At  238 (252)
T PF05176_consen  170 LKSWLVKLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYVGYVYLVDPNGRIRWAGSG-----------PAT  238 (252)
T ss_pred             HHHHHHHHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCCeEEeCccC-----------CCC
Confidence            2 1 11111 111    1   222222222  256777888875  45679999999999998655           456


Q ss_pred             hHHHHHHHHHHH
Q 014225          347 EAKLEFLEKQME  358 (428)
Q Consensus       347 ~~~~~~L~~~l~  358 (428)
                      ++.++.|.+.+.
T Consensus       239 ~~E~~~L~k~~~  250 (252)
T PF05176_consen  239 PEELESLWKCVK  250 (252)
T ss_pred             HHHHHHHHHHHh
Confidence            667777766553

A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane

>cd02343 ZZ_EF Zinc finger, ZZ type

Probab=96.30  E-value=0.0018  Score=43.75  Aligned_cols=30  Identities=30%  Similarity=0.783  Sum_probs=26.9

Q ss_pred             ccccccCCCCceeEeccCC-CCCCccccccc
Q 014225          390 ICCDCDEQGSGWAYQCLEC-GYEVHPKCVRA  419 (428)
Q Consensus       390 ~c~~C~~~g~~~~~~~~~~-~~~~~~~~~~~  419 (428)
                      .|++|++.-.+-.|+|..| +|||...|-..
T Consensus         2 ~CdgC~~~~~~~RykCl~C~d~DlC~~Cf~~   32 (48)
T cd02343           2 SCDGCDEIAPWHRYRCLQCTDMDLCKTCFLG   32 (48)
T ss_pred             CCCCCCCcCCCceEECCCCCCchhHHHHHhC
Confidence            5999999889999999999 89999999643

Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>cd02342 ZZ_UBA_plant Zinc finger, ZZ type

Probab=96.19  E-value=0.0026  Score=41.60  Aligned_cols=31  Identities=19%  Similarity=0.411  Sum_probs=27.1

Q ss_pred             ccccccC-CCCceeEeccCC-CCCCcccccccc
Q 014225          390 ICCDCDE-QGSGWAYQCLEC-GYEVHPKCVRAV  420 (428)
Q Consensus       390 ~c~~C~~-~g~~~~~~~~~~-~~~~~~~~~~~~  420 (428)
                      .||+|+. .-.|-.|+|..| +|||...|-...
T Consensus         2 ~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~~   34 (43)
T cd02342           2 QCDGCGVLPITGPRYKSKVKEDYDLCTICFSRM   34 (43)
T ss_pred             CCCCCCCCcccccceEeCCCCCCccHHHHhhhh
Confidence            6999998 558899999999 899999997653

Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.18  E-value=0.0075  Score=48.78  Aligned_cols=72  Identities=21%  Similarity=0.415  Sum_probs=47.3

Q ss_pred             CCCEEEEEEec--------CCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHH
Q 014225           60 EGKVTALYFSA--------NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETK  131 (428)
Q Consensus        60 ~gk~vlv~F~a--------~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~  131 (428)
                      +|+.+++.|.+        +|||.|.+..|.+.+..+...+   ++.+|.|.+...+.          |.     +..  
T Consensus        24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~---~~~~v~v~VG~rp~----------Wk-----~p~--   83 (128)
T KOG3425|consen   24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE---DVHFVHVYVGNRPY----------WK-----DPA--   83 (128)
T ss_pred             CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC---ceEEEEEEecCCCc----------cc-----CCC--
Confidence            56678888875        6999999999999888775443   37777765543221          21     111  


Q ss_pred             HHHHhhcCC-CCCceEEEEcC
Q 014225          132 KALNRKFDI-EGIPCLVVLQP  151 (428)
Q Consensus       132 ~~l~~~~~v-~~~P~~~lid~  151 (428)
                      ....+..++ +++||++=.+.
T Consensus        84 n~FR~d~~~lt~vPTLlrw~~  104 (128)
T KOG3425|consen   84 NPFRKDPGILTAVPTLLRWKR  104 (128)
T ss_pred             CccccCCCceeecceeeEEcC
Confidence            233344555 89999888873

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=96.13  E-value=0.029  Score=41.09  Aligned_cols=55  Identities=22%  Similarity=0.283  Sum_probs=35.9

Q ss_pred             EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225          230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF  309 (428)
Q Consensus       230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  309 (428)
                      ++.|+++||++|.+....|.+       .         ++.+..+.+|.+....                   .++.+..
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~-------~---------~i~~~~~~i~~~~~~~-------------------~~~~~~~   46 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDE-------R---------GIPFEEVDVDEDPEAL-------------------EELKKLN   46 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHH-------C---------CCCeEEEeCCCCHHHH-------------------HHHHHHc
Confidence            467889999999997776654       2         3556666776543211                   2333444


Q ss_pred             CcCccceEEE
Q 014225          310 DVQGIPCLVI  319 (428)
Q Consensus       310 ~v~~~P~~~l  319 (428)
                      ++.++|++++
T Consensus        47 ~~~~vP~i~~   56 (73)
T cd02976          47 GYRSVPVVVI   56 (73)
T ss_pred             CCcccCEEEE
Confidence            7889999865

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=96.09  E-value=0.024  Score=53.28  Aligned_cols=91  Identities=15%  Similarity=0.234  Sum_probs=54.3

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEec---CC-------------Ch-HHHHHHHhcCCCc-
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS---DE-------------DL-NAFNNYRACMPWL-  121 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~---D~-------------~~-~~~~~~~~~~~~~-  121 (428)
                      .+|.+++.|.-+.||+|+++.+.+.++.+.    | ++++..+.+   ..             +. ..+..+...+... 
T Consensus       116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~----g-~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~  190 (251)
T PRK11657        116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS----G-KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLG  190 (251)
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHhhc----C-ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccC
Confidence            568899999999999999999888776543    2 144433321   11             11 1122222111110 


Q ss_pred             -eecc--C-----ChHHHHHHHhhcCCCCCceEEEEcCCCCCCCc
Q 014225          122 -AVPY--S-----DLETKKALNRKFDIEGIPCLVVLQPYDDKDDA  158 (428)
Q Consensus       122 -~~~~--~-----d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i  158 (428)
                       ..+-  .     ..+.+..+.+.+|++++|++++.|.   +|++
T Consensus       191 ~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~---~G~~  232 (251)
T PRK11657        191 LKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDK---DGTL  232 (251)
T ss_pred             CCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECC---CCCE
Confidence             0000  0     1123456888999999999999998   8864

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=96.07  E-value=0.054  Score=50.33  Aligned_cols=83  Identities=20%  Similarity=0.254  Sum_probs=51.0

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecC--C-C----------------hHHHHHHHhcCCC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD--E-D----------------LNAFNNYRACMPW  120 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D--~-~----------------~~~~~~~~~~~~~  120 (428)
                      .||.+++.|.-+.||+|++..+.+.++.+    .+  +++..+...  . .                ...+.+.+.....
T Consensus       106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~~--v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~  179 (232)
T PRK10877        106 QEKHVITVFTDITCGYCHKLHEQMKDYNA----LG--ITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDV  179 (232)
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHhc----CC--eEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCC
Confidence            57899999999999999999988876533    34  656554321  1 0                0112222221111


Q ss_pred             c-eeccCChHHHHHHHhhcCCCCCceEEE
Q 014225          121 L-AVPYSDLETKKALNRKFDIEGIPCLVV  148 (428)
Q Consensus       121 ~-~~~~~d~~~~~~l~~~~~v~~~P~~~l  148 (428)
                      . .....+.+.+.++++.+|++++|++++
T Consensus       180 ~~~~c~~~v~~~~~la~~lgi~gTPtiv~  208 (232)
T PRK10877        180 SPASCDVDIADHYALGVQFGVQGTPAIVL  208 (232)
T ss_pred             CcccccchHHHhHHHHHHcCCccccEEEE
Confidence            0 011123345688999999999999884

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.06  E-value=0.0077  Score=53.87  Aligned_cols=72  Identities=22%  Similarity=0.344  Sum_probs=51.9

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      +.+.++|.|+|.|-+.|+...|.+.++..+|...+  +.+-.|.+..-                        ...+.+|+
T Consensus       143 k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~--lkFGkvDiGrf------------------------pd~a~kfr  196 (265)
T KOG0914|consen  143 KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNL--LKFGKVDIGRF------------------------PDVAAKFR  196 (265)
T ss_pred             CceEEEEEEEeecChhhcccccccHHHHHHhCCCC--CcccceeeccC------------------------cChHHhee
Confidence            34589999999999999999999999999998876  33333322211                        23444555


Q ss_pred             C------CCCceEEEEcCCCCCCCcccc
Q 014225          140 I------EGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v------~~~P~~~lid~~~~dG~i~~~  161 (428)
                      |      +.+||++++.    +|+-+.+
T Consensus       197 is~s~~srQLPT~ilFq----~gkE~~R  220 (265)
T KOG0914|consen  197 ISLSPGSRQLPTYILFQ----KGKEVSR  220 (265)
T ss_pred             eccCcccccCCeEEEEc----cchhhhc
Confidence            4      5689999999    5765544

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.03  E-value=0.023  Score=46.07  Aligned_cols=71  Identities=20%  Similarity=0.355  Sum_probs=47.8

Q ss_pred             CcEEEEEEec--------cCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCcccccc
Q 014225          226 GKTVGLYFSA--------RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF  297 (428)
Q Consensus       226 gk~vll~F~a--------~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~  297 (428)
                      |+.+.+.|.+        +|||.|.+..|.+.+..+....          ++.+|.+.+..- ..|              
T Consensus        25 ~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~----------~~~~v~v~VG~r-p~W--------------   79 (128)
T KOG3425|consen   25 GKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE----------DVHFVHVYVGNR-PYW--------------   79 (128)
T ss_pred             CceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC----------ceEEEEEEecCC-Ccc--------------
Confidence            4446666664        5999999999999888775543          578888877532 111              


Q ss_pred             CCcchhHHHHhcCc-CccceEEEECC
Q 014225          298 GDPTIKELTKYFDV-QGIPCLVIIGP  322 (428)
Q Consensus       298 ~~d~~~~~~~~~~v-~~~P~~~lid~  322 (428)
                       .|....+....++ .++||++=.+.
T Consensus        80 -k~p~n~FR~d~~~lt~vPTLlrw~~  104 (128)
T KOG3425|consen   80 -KDPANPFRKDPGILTAVPTLLRWKR  104 (128)
T ss_pred             -cCCCCccccCCCceeecceeeEEcC
Confidence             1223445555566 89999988864

>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=96.03  E-value=0.031  Score=47.17  Aligned_cols=118  Identities=17%  Similarity=0.209  Sum_probs=77.4

Q ss_pred             hhccCCCCccc-CCC------CCceecccc-cCCcEEEEEEec--cCChhHHh-hhHHHHHHHHHHHhhhhhcCCCCCCE
Q 014225          201 LLTNHDRGYLL-GHP------PDEKVPVSS-LVGKTVGLYFSA--RWCIPCEK-FMPKLLSIYQKIKQNLVEKGDALEDF  269 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~------g~~~v~l~~-~~gk~vll~F~a--~wC~~C~~-~~~~l~~l~~~~~~~~~~~~~~~~~~  269 (428)
                      .+|++.|+.++ ..-      |-..++..+ ++||.|+| |..  ...|.|.. .+|-+.+++++|+++         ++
T Consensus         4 ~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvl-f~lPGAFTPTCS~~hlPgY~~~~d~f~~k---------GV   73 (165)
T COG0678           4 MVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVL-FSLPGAFTPTCSSSHLPGYLELADEFKAK---------GV   73 (165)
T ss_pred             ccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEE-EeCCCccCCCcccccCccHHHHHHHHHHc---------CC
Confidence            45788887776 331      221344444 57777655 443  46778877 999999999999987         44


Q ss_pred             -EEEEEEcCCCHHHHHHHHhcCCcc-ccccCCcchhHHHHhcCc-----------CccceEEEECCCCcEEecc
Q 014225          270 -EVVFVSTDRDQTSFESYFGTMPWL-ALPFGDPTIKELTKYFDV-----------QGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       270 -~iv~is~d~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~v-----------~~~P~~~lid~~G~i~~~~  330 (428)
                       +|+-||++ +.--..++.+..+.- ++.+..|.+.++.+..|.           ++.....|+ .||.|..-+
T Consensus        74 D~I~cVSVN-D~FVm~AWak~~g~~~~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~~~  145 (165)
T COG0678          74 DEIYCVSVN-DAFVMNAWAKSQGGEGNIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEKLF  145 (165)
T ss_pred             ceEEEEEeC-cHHHHHHHHHhcCCCccEEEecCCCchhhhhcCceeecccCCcceeeeeEEEEE-eCCeEEEEE
Confidence             46777777 444444444444433 666677777888777653           555667788 899887764

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=96.01  E-value=0.56  Score=41.26  Aligned_cols=68  Identities=29%  Similarity=0.435  Sum_probs=49.5

Q ss_pred             CcE-EEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          226 GKT-VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       226 gk~-vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      +++ +++.|..............|.+++++++++          +.++.+..+..                       ..
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~----------~~f~~~d~~~~-----------------------~~  140 (184)
T PF13848_consen   94 PKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK----------INFVYVDADDF-----------------------PR  140 (184)
T ss_dssp             SSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT----------SEEEEEETTTT-----------------------HH
T ss_pred             CCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe----------EEEEEeehHHh-----------------------HH
Confidence            444 677776555666677778888888887754          77887777733                       56


Q ss_pred             HHHhcCcC--ccceEEEECCCCcE
Q 014225          305 LTKYFDVQ--GIPCLVIIGPEGKT  326 (428)
Q Consensus       305 ~~~~~~v~--~~P~~~lid~~G~i  326 (428)
                      +.+.||+.  .+|++++++.....
T Consensus       141 ~~~~~~i~~~~~P~~vi~~~~~~~  164 (184)
T PF13848_consen  141 LLKYFGIDEDDLPALVIFDSNKGK  164 (184)
T ss_dssp             HHHHTTTTTSSSSEEEEEETTTSE
T ss_pred             HHHHcCCCCccCCEEEEEECCCCc
Confidence            77889997  89999999955543

...

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=95.98  E-value=0.019  Score=43.58  Aligned_cols=59  Identities=20%  Similarity=0.291  Sum_probs=38.5

Q ss_pred             EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCc
Q 014225           65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP  144 (428)
Q Consensus        65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P  144 (428)
                      ++.|.++|||+|......|.++..       .++++-++.+.+..                   +....+.+..+..++|
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~-------~~~~~~v~~~~~~~-------------------~~~~~~~~~~g~~~~P   55 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGV-------KPAVVELDQHEDGS-------------------EIQDYLQELTGQRTVP   55 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCC-------CcEEEEEeCCCChH-------------------HHHHHHHHHhCCCCCC
Confidence            477889999999998777766433       25666665554322                   1114566667888999


Q ss_pred             eEEEEc
Q 014225          145 CLVVLQ  150 (428)
Q Consensus       145 ~~~lid  150 (428)
                      .+ +++
T Consensus        56 ~v-~~~   60 (82)
T cd03419          56 NV-FIG   60 (82)
T ss_pred             eE-EEC
Confidence            86 444

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=95.97  E-value=0.023  Score=42.88  Aligned_cols=52  Identities=23%  Similarity=0.472  Sum_probs=35.4

Q ss_pred             EecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCceEE
Q 014225           68 FSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLV  147 (428)
Q Consensus        68 F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~  147 (428)
                      +++++|+.|......++++.+.+.-   +++++-  .  .                   +.   ..+ ..||+.++|++ 
T Consensus         5 v~~~~C~~C~~~~~~~~~~~~~~~i---~~ei~~--~--~-------------------~~---~~~-~~ygv~~vPal-   53 (76)
T PF13192_consen    5 VFSPGCPYCPELVQLLKEAAEELGI---EVEIID--I--E-------------------DF---EEI-EKYGVMSVPAL-   53 (76)
T ss_dssp             EECSSCTTHHHHHHHHHHHHHHTTE---EEEEEE--T--T-------------------TH---HHH-HHTT-SSSSEE-
T ss_pred             EeCCCCCCcHHHHHHHHHHHHhcCC---eEEEEE--c--c-------------------CH---HHH-HHcCCCCCCEE-
Confidence            3678899999988888888888631   244432  1  1                   11   555 89999999998 


Q ss_pred             EEc
Q 014225          148 VLQ  150 (428)
Q Consensus       148 lid  150 (428)
                      +||
T Consensus        54 vIn   56 (76)
T PF13192_consen   54 VIN   56 (76)
T ss_dssp             EET
T ss_pred             EEC
Confidence            444

...

>cd02334 ZZ_dystrophin Zinc finger, ZZ type

Probab=95.97  E-value=0.0041  Score=42.52  Aligned_cols=30  Identities=33%  Similarity=0.934  Sum_probs=26.4

Q ss_pred             ccccccC-CCCceeEeccCC-CCCCccccccc
Q 014225          390 ICCDCDE-QGSGWAYQCLEC-GYEVHPKCVRA  419 (428)
Q Consensus       390 ~c~~C~~-~g~~~~~~~~~~-~~~~~~~~~~~  419 (428)
                      .|+.|++ .-.|..|+|..| +|||...|-..
T Consensus         2 ~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~~   33 (49)
T cd02334           2 KCNICKEFPITGFRYRCLKCFNYDLCQSCFFS   33 (49)
T ss_pred             CCCCCCCCCceeeeEECCCCCCcCchHHHHhC
Confidence            5999997 468999999999 89999999753

Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=95.93  E-value=0.028  Score=41.21  Aligned_cols=55  Identities=22%  Similarity=0.341  Sum_probs=34.8

Q ss_pred             EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCc
Q 014225           65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP  144 (428)
Q Consensus        65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P  144 (428)
                      ++.|+++||++|......|.+       .+  +.+..+++|.+....                    ..+.+..++..+|
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~-------~~--i~~~~~~i~~~~~~~--------------------~~~~~~~~~~~vP   52 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDE-------RG--IPFEEVDVDEDPEAL--------------------EELKKLNGYRSVP   52 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHH-------CC--CCeEEEeCCCCHHHH--------------------HHHHHHcCCcccC
Confidence            567899999999997766654       23  555556665543211                    3334444678899


Q ss_pred             eEEE
Q 014225          145 CLVV  148 (428)
Q Consensus       145 ~~~l  148 (428)
                      ++++
T Consensus        53 ~i~~   56 (73)
T cd02976          53 VVVI   56 (73)
T ss_pred             EEEE
Confidence            8754

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=95.87  E-value=0.034  Score=42.98  Aligned_cols=65  Identities=20%  Similarity=0.318  Sum_probs=40.3

Q ss_pred             EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225          230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF  309 (428)
Q Consensus       230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  309 (428)
                      ++.|..+|||+|.+....|.++..++.           ++.+..++++.+...                   ..++.+.+
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~~-----------~i~~~~idi~~~~~~-------------------~~~l~~~~   51 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIERA-----------DFEFRYIDIHAEGIS-------------------KADLEKTV   51 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCcccC-----------CCcEEEEECCCCHHH-------------------HHHHHHHh
Confidence            567788999999999888877654322           345556666543211                   13344455


Q ss_pred             C--cCccceEEEECCCCcEE
Q 014225          310 D--VQGIPCLVIIGPEGKTV  327 (428)
Q Consensus       310 ~--v~~~P~~~lid~~G~i~  327 (428)
                      +  +.++|.++ +  +|+.+
T Consensus        52 g~~~~tVP~if-i--~g~~i   68 (86)
T TIGR02183        52 GKPVETVPQIF-V--DEKHV   68 (86)
T ss_pred             CCCCCCcCeEE-E--CCEEe
Confidence            5  47899985 4  35543

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type

Probab=95.78  E-value=0.0055  Score=41.69  Aligned_cols=31  Identities=32%  Similarity=0.812  Sum_probs=27.8

Q ss_pred             cccccccC-CCCceeEeccCCC---CCCccccccc
Q 014225          389 FICCDCDE-QGSGWAYQCLECG---YEVHPKCVRA  419 (428)
Q Consensus       389 ~~c~~C~~-~g~~~~~~~~~~~---~~~~~~~~~~  419 (428)
                      |.|++|+. .-.|-.|+|..|.   |||...|-..
T Consensus         1 y~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~   35 (48)
T cd02341           1 FKCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVK   35 (48)
T ss_pred             CCCCCCCCCccccceEECCCCCCCCCccCHHHHhC
Confidence            57999998 8889999999997   9999999754

Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>cd02344 ZZ_HERC2 Zinc finger, ZZ type

Probab=95.69  E-value=0.0065  Score=40.64  Aligned_cols=30  Identities=20%  Similarity=0.729  Sum_probs=26.4

Q ss_pred             ccccccC-CCCceeEeccCC-CCCCccccccc
Q 014225          390 ICCDCDE-QGSGWAYQCLEC-GYEVHPKCVRA  419 (428)
Q Consensus       390 ~c~~C~~-~g~~~~~~~~~~-~~~~~~~~~~~  419 (428)
                      .|++|+. .-.|-.|+|..| +|||...|-..
T Consensus         2 ~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~~   33 (45)
T cd02344           2 TCDGCQMFPINGPRFKCRNCDDFDFCENCFKT   33 (45)
T ss_pred             CCCCCCCCCCccCeEECCCCCCccchHHhhCC
Confidence            5999996 678899999999 79999999755

Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=95.67  E-value=0.042  Score=42.55  Aligned_cols=82  Identities=21%  Similarity=0.167  Sum_probs=48.6

Q ss_pred             EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEec--CCC-----hHHHHHHHh--cCCCceeccCChHHHHHHH
Q 014225           65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS--DED-----LNAFNNYRA--CMPWLAVPYSDLETKKALN  135 (428)
Q Consensus        65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~--D~~-----~~~~~~~~~--~~~~~~~~~~d~~~~~~l~  135 (428)
                      +..|+.+.||+|....+.+.++.....+   ++.+..+.+  ...     .........  ..+ ....+.+.-......
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~   76 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADDG---GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQG-KFEALHEALADTALA   76 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcCC---cEEEEEeccccCCCCCcchHHHHHHHHHHHHcC-cHHHHHHHHHHHHHH
Confidence            4678999999999999999998744433   266666553  222     111111111  100 000010111337888


Q ss_pred             hhcCCCCCceEEEEc
Q 014225          136 RKFDIEGIPCLVVLQ  150 (428)
Q Consensus       136 ~~~~v~~~P~~~lid  150 (428)
                      +.+|+.++|++++-+
T Consensus        77 ~~~g~~g~Pt~v~~~   91 (98)
T cd02972          77 RALGVTGTPTFVVNG   91 (98)
T ss_pred             HHcCCCCCCEEEECC
Confidence            899999999988866

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=95.64  E-value=0.056  Score=41.00  Aligned_cols=60  Identities=18%  Similarity=0.283  Sum_probs=40.0

Q ss_pred             EEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHh
Q 014225          229 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKY  308 (428)
Q Consensus       229 vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  308 (428)
                      -++.|..+|||+|.+....|.+       .         ++.+..++++.+..                    ..++.+.
T Consensus         9 ~V~ly~~~~Cp~C~~ak~~L~~-------~---------gi~y~~idi~~~~~--------------------~~~~~~~   52 (79)
T TIGR02190         9 SVVVFTKPGCPFCAKAKATLKE-------K---------GYDFEEIPLGNDAR--------------------GRSLRAV   52 (79)
T ss_pred             CEEEEECCCCHhHHHHHHHHHH-------c---------CCCcEEEECCCChH--------------------HHHHHHH
Confidence            4567889999999998777753       2         35555566664422                    1344556


Q ss_pred             cCcCccceEEEECCCCcEE
Q 014225          309 FDVQGIPCLVIIGPEGKTV  327 (428)
Q Consensus       309 ~~v~~~P~~~lid~~G~i~  327 (428)
                      .|...+|.+++   +|+.+
T Consensus        53 ~g~~~vP~i~i---~g~~i   68 (79)
T TIGR02190        53 TGATTVPQVFI---GGKLI   68 (79)
T ss_pred             HCCCCcCeEEE---CCEEE
Confidence            78899999964   46554

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=95.63  E-value=0.088  Score=55.53  Aligned_cols=75  Identities=11%  Similarity=0.123  Sum_probs=53.0

Q ss_pred             ccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCc
Q 014225          221 VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP  300 (428)
Q Consensus       221 l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d  300 (428)
                      +..+++.+.++.|+.+.|..|......|+++. .+.+          .+.+..+..+.+                     
T Consensus       361 ~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~----------~i~~~~~~~~~~---------------------  408 (555)
T TIGR03143       361 FGRLENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSE----------KLNSEAVNRGEE---------------------  408 (555)
T ss_pred             HHhcCCCEEEEEEECCCchhhHHHHHHHHHHH-hcCC----------cEEEEEeccccc---------------------
Confidence            34567778888999888988988777776665 3333          356655444332                     


Q ss_pred             chhHHHHhcCcCccceEEEECCCCc---EEec
Q 014225          301 TIKELTKYFDVQGIPCLVIIGPEGK---TVTK  329 (428)
Q Consensus       301 ~~~~~~~~~~v~~~P~~~lid~~G~---i~~~  329 (428)
                        .++++.|++...|++.|++.+|.   |++.
T Consensus       409 --~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~  438 (555)
T TIGR03143       409 --PESETLPKITKLPTVALLDDDGNYTGLKFH  438 (555)
T ss_pred             --hhhHhhcCCCcCCEEEEEeCCCcccceEEE
Confidence              67888999999999999976663   5554

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PHA03050 glutaredoxin; Provisional

Probab=95.55  E-value=0.044  Score=44.43  Aligned_cols=61  Identities=16%  Similarity=0.157  Sum_probs=35.1

Q ss_pred             EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCc
Q 014225           65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP  144 (428)
Q Consensus        65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P  144 (428)
                      ++.|..+|||+|.+....|++.    +-....++++-  +|....                 .......+.+.-|...+|
T Consensus        15 V~vys~~~CPyC~~ak~~L~~~----~i~~~~~~~i~--i~~~~~-----------------~~~~~~~l~~~tG~~tVP   71 (108)
T PHA03050         15 VTIFVKFTCPFCRNALDILNKF----SFKRGAYEIVD--IKEFKP-----------------ENELRDYFEQITGGRTVP   71 (108)
T ss_pred             EEEEECCCChHHHHHHHHHHHc----CCCcCCcEEEE--CCCCCC-----------------CHHHHHHHHHHcCCCCcC
Confidence            5678899999999966555432    21111244444  443211                 112225666777788899


Q ss_pred             eEEE
Q 014225          145 CLVV  148 (428)
Q Consensus       145 ~~~l  148 (428)
                      .+++
T Consensus        72 ~IfI   75 (108)
T PHA03050         72 RIFF   75 (108)
T ss_pred             EEEE
Confidence            8744

>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.53  E-value=0.0041  Score=42.06  Aligned_cols=33  Identities=27%  Similarity=0.752  Sum_probs=25.5

Q ss_pred             CCcccccccC-CCCceeEeccCC-CCCCccccccc
Q 014225          387 GPFICCDCDE-QGSGWAYQCLEC-GYEVHPKCVRA  419 (428)
Q Consensus       387 ~~~~c~~C~~-~g~~~~~~~~~~-~~~~~~~~~~~  419 (428)
                      ..+.|++|+. .-.|-.|+|..| +|||...|-..
T Consensus         3 ~~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~~   37 (46)
T PF00569_consen    3 HGYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFSK   37 (46)
T ss_dssp             SSCE-SSS-SSSEESSEEEESSSSS-EEEHHHHHH
T ss_pred             CCeECcCCCCCcCcCCeEECCCCCCCchhhHHHhC
Confidence            3678999999 667899999999 79999999754

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.

>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ

Probab=95.51  E-value=0.3  Score=41.97  Aligned_cols=118  Identities=14%  Similarity=0.185  Sum_probs=68.8

Q ss_pred             eecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHH-HHhhhhhcCCCCCCEEEEEE-EcCCC--------HHHHHHHH
Q 014225          218 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQK-IKQNLVEKGDALEDFEVVFV-STDRD--------QTSFESYF  287 (428)
Q Consensus       218 ~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~iv~i-s~d~~--------~~~~~~~~  287 (428)
                      .++.+.+.||+-+|...|-....=....|.+..+.+. |...         .++..+| ++|+.        ....+.--
T Consensus        29 ~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d---------~yqtttIiN~dDAi~gt~~fVrss~e~~k   99 (160)
T PF09695_consen   29 PWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHD---------KYQTTTIINLDDAIWGTGGFVRSSAEDSK   99 (160)
T ss_pred             ccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCcc---------ceeEEEEEecccccccchHHHHHHHHHhh
Confidence            5566778999988887765443333445555555443 4432         4565554 44432        11222222


Q ss_pred             hcCCccccccCCcchhHHHHhcCcCcc-ceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHH
Q 014225          288 GTMPWLALPFGDPTIKELTKYFDVQGI-PCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQM  357 (428)
Q Consensus       288 ~~~~~~~~~~~~d~~~~~~~~~~v~~~-P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l  357 (428)
                      ++.||-.|  ..|.++.+.+.|+...- -.++|+|++|+|++...+           ..+++.++...+.|
T Consensus       100 k~~p~s~~--vlD~~G~~~~aW~L~~~~SaiiVlDK~G~V~F~k~G-----------~Ls~~Ev~qVi~Ll  157 (160)
T PF09695_consen  100 KEFPWSQF--VLDSNGVVRKAWQLQEESSAIIVLDKQGKVQFVKEG-----------ALSPAEVQQVIALL  157 (160)
T ss_pred             hhCCCcEE--EEcCCCceeccccCCCCCceEEEEcCCccEEEEECC-----------CCCHHHHHHHHHHH
Confidence            33444333  44556777888877533 468899999999998544           45666665555444

>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein

Probab=95.45  E-value=0.011  Score=39.53  Aligned_cols=32  Identities=28%  Similarity=0.814  Sum_probs=28.8

Q ss_pred             CcccccccCCCCceeEeccCC-CCCCccccccc
Q 014225          388 PFICCDCDEQGSGWAYQCLEC-GYEVHPKCVRA  419 (428)
Q Consensus       388 ~~~c~~C~~~g~~~~~~~~~~-~~~~~~~~~~~  419 (428)
                      .+.|+.|++.-.|-.|+|..| +|||.+.|-..
T Consensus         4 ~~~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~~   36 (44)
T smart00291        4 SYSCDTCGKPIVGVRYHCLVCPDYDLCQSCFAK   36 (44)
T ss_pred             CcCCCCCCCCCcCCEEECCCCCCccchHHHHhC
Confidence            568999999888999999999 89999999754

Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=95.32  E-value=0.04  Score=46.16  Aligned_cols=69  Identities=12%  Similarity=0.240  Sum_probs=49.5

Q ss_pred             EEEEEEec--CCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225           63 VTALYFSA--NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI  140 (428)
Q Consensus        63 ~vlv~F~a--~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v  140 (428)
                      ..+|+|-.  --++-+....-.|.++.++|.+..  +.+..|++|..                        ..++..|||
T Consensus        36 ~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~--v~~akVDiD~~------------------------~~LA~~fgV   89 (132)
T PRK11509         36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYT--WQVAIADLEQS------------------------EAIGDRFGV   89 (132)
T ss_pred             cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCc--eEEEEEECCCC------------------------HHHHHHcCC
Confidence            45555542  234555666667888888885432  77777766654                        789999999


Q ss_pred             CCCceEEEEcCCCCCCCcccc
Q 014225          141 EGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       141 ~~~P~~~lid~~~~dG~i~~~  161 (428)
                      .++||++|+.    ||+.+..
T Consensus        90 ~siPTLl~Fk----dGk~v~~  106 (132)
T PRK11509         90 FRFPATLVFT----GGNYRGV  106 (132)
T ss_pred             ccCCEEEEEE----CCEEEEE
Confidence            9999999999    7977754

>cd02335 ZZ_ADA2 Zinc finger, ZZ type

Probab=95.30  E-value=0.011  Score=40.47  Aligned_cols=31  Identities=26%  Similarity=0.763  Sum_probs=27.1

Q ss_pred             cccccccCCCCc-eeEeccCC-CCCCccccccc
Q 014225          389 FICCDCDEQGSG-WAYQCLEC-GYEVHPKCVRA  419 (428)
Q Consensus       389 ~~c~~C~~~g~~-~~~~~~~~-~~~~~~~~~~~  419 (428)
                      |.|++|.+...+ -.|+|..| +|||...|-..
T Consensus         1 ~~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~~   33 (49)
T cd02335           1 YHCDYCSKDITGTIRIKCAECPDFDLCLECFSA   33 (49)
T ss_pred             CCCCCcCCCCCCCcEEECCCCCCcchhHHhhhC
Confidence            569999997766 89999999 89999999754

Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=95.25  E-value=0.055  Score=43.12  Aligned_cols=59  Identities=17%  Similarity=0.211  Sum_probs=35.0

Q ss_pred             EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCc
Q 014225           65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP  144 (428)
Q Consensus        65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P  144 (428)
                      ++.|..+|||+|.+....|.    +   .+  +..-.+++|.+.+                 ..+....+.+..|...+|
T Consensus        10 Vvvysk~~Cp~C~~ak~~L~----~---~~--i~~~~vdid~~~~-----------------~~~~~~~l~~~tg~~tvP   63 (99)
T TIGR02189        10 VVIFSRSSCCMCHVVKRLLL----T---LG--VNPAVHEIDKEPA-----------------GKDIENALSRLGCSPAVP   63 (99)
T ss_pred             EEEEECCCCHHHHHHHHHHH----H---cC--CCCEEEEcCCCcc-----------------HHHHHHHHHHhcCCCCcC
Confidence            56688899999998655443    3   23  3334455654432                 111114555556778899


Q ss_pred             eEEEEc
Q 014225          145 CLVVLQ  150 (428)
Q Consensus       145 ~~~lid  150 (428)
                      .+ +|+
T Consensus        64 ~V-fi~   68 (99)
T TIGR02189        64 AV-FVG   68 (99)
T ss_pred             eE-EEC
Confidence            86 455

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=95.22  E-value=0.067  Score=42.62  Aligned_cols=21  Identities=29%  Similarity=0.418  Sum_probs=16.6

Q ss_pred             EEEEeccCChhHHhhhHHHHH
Q 014225          230 GLYFSARWCIPCEKFMPKLLS  250 (428)
Q Consensus       230 ll~F~a~wC~~C~~~~~~l~~  250 (428)
                      ++.|..+|||+|.+....|.+
T Consensus        10 Vvvysk~~Cp~C~~ak~~L~~   30 (99)
T TIGR02189        10 VVIFSRSSCCMCHVVKRLLLT   30 (99)
T ss_pred             EEEEECCCCHHHHHHHHHHHH
Confidence            556788999999988776554

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=95.15  E-value=0.072  Score=38.68  Aligned_cols=61  Identities=21%  Similarity=0.286  Sum_probs=40.2

Q ss_pred             EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225          230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF  309 (428)
Q Consensus       230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  309 (428)
                      ++.|.++|||+|+.....|.+.                ++.+..++++.+.+ .                  ...+.+..
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~----------------~i~~~~~di~~~~~-~------------------~~~l~~~~   46 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESL----------------GIEFEEIDILEDGE-L------------------REELKELS   46 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc----------------CCcEEEEECCCCHH-H------------------HHHHHHHh
Confidence            4567899999999988877753                24455666665432 1                  14455556


Q ss_pred             CcCccceEEEECCCCcEEe
Q 014225          310 DVQGIPCLVIIGPEGKTVT  328 (428)
Q Consensus       310 ~v~~~P~~~lid~~G~i~~  328 (428)
                      +...+|++++   +|+.+.
T Consensus        47 ~~~~~P~~~~---~~~~ig   62 (72)
T cd02066          47 GWPTVPQIFI---NGEFIG   62 (72)
T ss_pred             CCCCcCEEEE---CCEEEe
Confidence            7788998754   566554

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=95.13  E-value=0.12  Score=41.50  Aligned_cols=76  Identities=16%  Similarity=0.303  Sum_probs=51.7

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      .++++|+=.++.||.+......|++.++...+.          +.+..+.+-...                   +....+
T Consensus        19 ~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~----------~~~y~l~v~~~R-------------------~vSn~I   69 (105)
T PF11009_consen   19 EKPVLIFKHSTRCPISAMALREFEKFWEESPDE----------IPVYYLDVIEYR-------------------PVSNAI   69 (105)
T ss_dssp             -SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT--------------EEEEEGGGGH-------------------HHHHHH
T ss_pred             cCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc----------ceEEEEEEEeCc-------------------hhHHHH
Confidence            467888878999999999888888877765432          677777764332                   124789


Q ss_pred             HHhcCcC-ccceEEEECCCCcEEeccc
Q 014225          306 TKYFDVQ-GIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       306 ~~~~~v~-~~P~~~lid~~G~i~~~~~  331 (428)
                      ++.|||+ .-|.++|| ++|++++.-.
T Consensus        70 Ae~~~V~HeSPQ~ili-~~g~~v~~aS   95 (105)
T PF11009_consen   70 AEDFGVKHESPQVILI-KNGKVVWHAS   95 (105)
T ss_dssp             HHHHT----SSEEEEE-ETTEEEEEEE
T ss_pred             HHHhCCCcCCCcEEEE-ECCEEEEECc
Confidence            9999996 67999999 9999998643

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>PHA03050 glutaredoxin; Provisional

Probab=95.10  E-value=0.044  Score=44.44  Aligned_cols=22  Identities=18%  Similarity=0.172  Sum_probs=17.7

Q ss_pred             EEEEeccCChhHHhhhHHHHHH
Q 014225          230 GLYFSARWCIPCEKFMPKLLSI  251 (428)
Q Consensus       230 ll~F~a~wC~~C~~~~~~l~~l  251 (428)
                      ++.|..+|||+|.+....|.++
T Consensus        15 V~vys~~~CPyC~~ak~~L~~~   36 (108)
T PHA03050         15 VTIFVKFTCPFCRNALDILNKF   36 (108)
T ss_pred             EEEEECCCChHHHHHHHHHHHc
Confidence            5678999999999887776654

>PRK10329 glutaredoxin-like protein; Provisional

Probab=94.90  E-value=0.35  Score=36.88  Aligned_cols=54  Identities=15%  Similarity=0.340  Sum_probs=35.3

Q ss_pred             EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225          230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF  309 (428)
Q Consensus       230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  309 (428)
                      +..|..+|||+|......|.+       +         ++.+-.+.++.+.+..                   ..+ +..
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~~-------~---------gI~~~~idi~~~~~~~-------------------~~~-~~~   46 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAMES-------R---------GFDFEMINVDRVPEAA-------------------ETL-RAQ   46 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHHH-------C---------CCceEEEECCCCHHHH-------------------HHH-HHc
Confidence            456778999999987776643       2         5666677777554211                   122 334


Q ss_pred             CcCccceEEE
Q 014225          310 DVQGIPCLVI  319 (428)
Q Consensus       310 ~v~~~P~~~l  319 (428)
                      |...+|++++
T Consensus        47 g~~~vPvv~i   56 (81)
T PRK10329         47 GFRQLPVVIA   56 (81)
T ss_pred             CCCCcCEEEE
Confidence            7789999864

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=94.85  E-value=0.065  Score=41.43  Aligned_cols=39  Identities=15%  Similarity=0.242  Sum_probs=25.4

Q ss_pred             EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCC
Q 014225           65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED  107 (428)
Q Consensus        65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~  107 (428)
                      ++.|..+|||+|.+....|.++..++.  +  +.+..++++.+
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~~--~--i~~~~idi~~~   40 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIERA--D--FEFRYIDIHAE   40 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCcccC--C--CcEEEEECCCC
Confidence            567889999999997776666543321  2  45555555533

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.82  E-value=0.17  Score=45.54  Aligned_cols=93  Identities=19%  Similarity=0.367  Sum_probs=68.6

Q ss_pred             CCCccc-CCCCCceeccccc-CCcEEE-E--EEecc----CChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEc
Q 014225          206 DRGYLL-GHPPDEKVPVSSL-VGKTVG-L--YFSAR----WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST  276 (428)
Q Consensus       206 ~p~f~l-~~~g~~~v~l~~~-~gk~vl-l--~F~a~----wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~  276 (428)
                      ..++.+ ..+|  +.+|+++ .|+-.| |  ++++|    -||.|...+..+.-....+...         ++.++.||-
T Consensus        52 ~K~Y~Fe~~~G--~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~---------dv~lv~VsR  120 (247)
T COG4312          52 DKDYVFETENG--KKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHH---------DVTLVAVSR  120 (247)
T ss_pred             cceeEeecCCc--chhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhc---------CceEEEEec
Confidence            446777 5566  4788884 565322 2  23355    4999999999997777777765         799999985


Q ss_pred             CCCHHHHHHHHhcCCccccccCCcchhHHHHhcCc
Q 014225          277 DRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDV  311 (428)
Q Consensus       277 d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  311 (428)
                      - ..+++..+-+.|+|- ||........+...|++
T Consensus       121 A-Pl~~l~~~k~rmGW~-f~w~Ss~~s~Fn~Df~v  153 (247)
T COG4312         121 A-PLEELVAYKRRMGWQ-FPWVSSTDSDFNRDFQV  153 (247)
T ss_pred             C-cHHHHHHHHHhcCCc-ceeEeccCccccccccc
Confidence            4 788999999999987 88877777777777755

>cd02345 ZZ_dah Zinc finger, ZZ type

Probab=94.80  E-value=0.017  Score=39.52  Aligned_cols=30  Identities=27%  Similarity=0.712  Sum_probs=26.1

Q ss_pred             ccccccC-CCCceeEeccCC-CCCCccccccc
Q 014225          390 ICCDCDE-QGSGWAYQCLEC-GYEVHPKCVRA  419 (428)
Q Consensus       390 ~c~~C~~-~g~~~~~~~~~~-~~~~~~~~~~~  419 (428)
                      .|++|++ .-.|-.|+|..| +|||...|-..
T Consensus         2 ~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~~   33 (49)
T cd02345           2 SCSACRKQDISGIRFPCQVCRDYSLCLGCYTK   33 (49)
T ss_pred             cCCCCCCCCceEeeEECCCCCCcCchHHHHhC
Confidence            5999999 667889999999 89999999754

Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=94.75  E-value=0.24  Score=36.65  Aligned_cols=53  Identities=13%  Similarity=0.273  Sum_probs=34.3

Q ss_pred             EEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhcC
Q 014225          231 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFD  310 (428)
Q Consensus       231 l~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  310 (428)
                      ..|..++||+|.+....|.+       .         ++.+-.+.++.+.+..                   ..+. ..|
T Consensus         2 ~ly~~~~Cp~C~~ak~~L~~-------~---------~i~~~~~di~~~~~~~-------------------~~~~-~~g   45 (72)
T TIGR02194         2 TVYSKNNCVQCKMTKKALEE-------H---------GIAFEEINIDEQPEAI-------------------DYVK-AQG   45 (72)
T ss_pred             EEEeCCCCHHHHHHHHHHHH-------C---------CCceEEEECCCCHHHH-------------------HHHH-HcC
Confidence            45678999999998877763       2         4566666776553211                   2222 347


Q ss_pred             cCccceEEE
Q 014225          311 VQGIPCLVI  319 (428)
Q Consensus       311 v~~~P~~~l  319 (428)
                      ..++|.+++
T Consensus        46 ~~~vP~v~~   54 (72)
T TIGR02194        46 FRQVPVIVA   54 (72)
T ss_pred             CcccCEEEE
Confidence            889999754

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>cd02338 ZZ_PCMF_like Zinc finger, ZZ type

Probab=94.56  E-value=0.022  Score=39.01  Aligned_cols=30  Identities=30%  Similarity=0.850  Sum_probs=25.9

Q ss_pred             cccccc-CCCCceeEeccCC-CCCCccccccc
Q 014225          390 ICCDCD-EQGSGWAYQCLEC-GYEVHPKCVRA  419 (428)
Q Consensus       390 ~c~~C~-~~g~~~~~~~~~~-~~~~~~~~~~~  419 (428)
                      .|++|+ ..-.|-.|+|..| +|||...|-..
T Consensus         2 ~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~~   33 (49)
T cd02338           2 SCDGCGKSNFTGRRYKCLICYDYDLCADCYDS   33 (49)
T ss_pred             CCCCCcCCCcEEeeEEeCCCCCCccchhHHhC
Confidence            599999 5667899999999 89999999654

Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.

>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=94.54  E-value=0.0068  Score=54.93  Aligned_cols=71  Identities=21%  Similarity=0.387  Sum_probs=52.4

Q ss_pred             EEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHh
Q 014225          229 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKY  308 (428)
Q Consensus       229 vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  308 (428)
                      .++.|+++|||.|....|+|..++.--.+.         ++.+..|.+-.+                       .-+.-.
T Consensus        42 wmi~~~ap~~psc~~~~~~~~~~a~~s~dL---------~v~va~VDvt~n-----------------------pgLsGR   89 (248)
T KOG0913|consen   42 WMIEFGAPWCPSCSDLIPHLENFATVSLDL---------GVKVAKVDVTTN-----------------------PGLSGR   89 (248)
T ss_pred             HHHHhcCCCCccccchHHHHhccCCccCCC---------ceeEEEEEEEec-----------------------ccccee
Confidence            688999999999999999999876544333         455555544322                       345667


Q ss_pred             cCcCccceEEEECCCCcEEecccc
Q 014225          309 FDVQGIPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       309 ~~v~~~P~~~lid~~G~i~~~~~~  332 (428)
                      |-+...||+|=+ +||......|.
T Consensus        90 F~vtaLptIYHv-kDGeFrrysga  112 (248)
T KOG0913|consen   90 FLVTALPTIYHV-KDGEFRRYSGA  112 (248)
T ss_pred             eEEEecceEEEe-eccccccccCc
Confidence            889999999999 99987665544

>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []

Probab=94.53  E-value=0.17  Score=46.24  Aligned_cols=105  Identities=15%  Similarity=0.078  Sum_probs=73.1

Q ss_pred             EEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCC-cEEEEEEecCCChHHHH-HHHhcCCCceeccCC-hH
Q 014225           53 QVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGS-DFEVVFVSSDEDLNAFN-NYRACMPWLAVPYSD-LE  129 (428)
Q Consensus        53 ~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~-~~~ii~vs~D~~~~~~~-~~~~~~~~~~~~~~d-~~  129 (428)
                      .-.+.+.+|+++||-+-..+|..|...+..|..|..++...|- ++.++.|+--.....+. ..+++.--..+|... ..
T Consensus        18 ~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r~~~~ipVyqq~~   97 (238)
T PF04592_consen   18 QDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRRVSEHIPVYQQDE   97 (238)
T ss_pred             chHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHhCCCCCceecCCc
Confidence            5677888999999999999999999999999999999998874 67777776433333222 233322112233321 22


Q ss_pred             HHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          130 TKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       130 ~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      ....++..++-..- -++|+|+   -|++.+.
T Consensus        98 ~q~dvW~~L~G~kd-D~~iyDR---CGrL~~~  125 (238)
T PF04592_consen   98 NQPDVWELLNGSKD-DFLIYDR---CGRLTYH  125 (238)
T ss_pred             cccCHHHHhCCCcC-cEEEEec---cCcEEEE
Confidence            33678888876543 4788999   9988765

It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=94.52  E-value=0.16  Score=37.57  Aligned_cols=59  Identities=19%  Similarity=0.260  Sum_probs=38.1

Q ss_pred             EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225          230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF  309 (428)
Q Consensus       230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  309 (428)
                      ++.|..+|||+|.+....|.+       .         ++.+..++++.+..                    ...+.+..
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~-------~---------~i~~~~~~v~~~~~--------------------~~~~~~~~   46 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQE-------N---------GISYEEIPLGKDIT--------------------GRSLRAVT   46 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHH-------c---------CCCcEEEECCCChh--------------------HHHHHHHh
Confidence            456788999999998766653       2         35555666664421                    13445556


Q ss_pred             CcCccceEEEECCCCcEE
Q 014225          310 DVQGIPCLVIIGPEGKTV  327 (428)
Q Consensus       310 ~v~~~P~~~lid~~G~i~  327 (428)
                      |...+|.+ ++|  |+.+
T Consensus        47 g~~~vP~i-fi~--g~~i   61 (72)
T cd03029          47 GAMTVPQV-FID--GELI   61 (72)
T ss_pred             CCCCcCeE-EEC--CEEE
Confidence            88999997 454  5544

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=94.50  E-value=0.14  Score=38.76  Aligned_cols=58  Identities=14%  Similarity=0.293  Sum_probs=37.6

Q ss_pred             CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225           61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI  140 (428)
Q Consensus        61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v  140 (428)
                      .+.-++.|..+||++|.+..-.|.       ..|  +.+..++++.+...                     ..+.+..+.
T Consensus         6 ~~~~V~ly~~~~Cp~C~~ak~~L~-------~~g--i~y~~idi~~~~~~---------------------~~~~~~~g~   55 (79)
T TIGR02190         6 KPESVVVFTKPGCPFCAKAKATLK-------EKG--YDFEEIPLGNDARG---------------------RSLRAVTGA   55 (79)
T ss_pred             CCCCEEEEECCCCHhHHHHHHHHH-------HcC--CCcEEEECCCChHH---------------------HHHHHHHCC
Confidence            344567889999999999766664       234  44555566554320                     334455678


Q ss_pred             CCCceEEE
Q 014225          141 EGIPCLVV  148 (428)
Q Consensus       141 ~~~P~~~l  148 (428)
                      ..+|.+++
T Consensus        56 ~~vP~i~i   63 (79)
T TIGR02190        56 TTVPQVFI   63 (79)
T ss_pred             CCcCeEEE
Confidence            88998753

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=94.47  E-value=0.073  Score=45.33  Aligned_cols=39  Identities=26%  Similarity=0.303  Sum_probs=31.6

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEE
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFV  102 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~v  102 (428)
                      .++++++.|+..+||+|+.+.|.+.++..++.+    +.++..
T Consensus         4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~----~~~~~~   42 (154)
T cd03023           4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD----VRVVFK   42 (154)
T ss_pred             CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCC----ceEEEE
Confidence            468999999999999999999999998876532    555543

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=94.45  E-value=0.075  Score=45.27  Aligned_cols=32  Identities=22%  Similarity=0.317  Sum_probs=27.5

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIK  256 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~  256 (428)
                      .++++++.|+.++||+|..+.+.+.++..++.
T Consensus         4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~   35 (154)
T cd03023           4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP   35 (154)
T ss_pred             CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC
Confidence            36889999999999999999999988776653

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>KOG3414 consensus Component of the U4/U6

Probab=94.37  E-value=0.95  Score=37.16  Aligned_cols=80  Identities=15%  Similarity=0.246  Sum_probs=58.3

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      ..|.|+|-|.-.|-|.|.++-..|.+++.....-          ..|..+.+|.-                       .+
T Consensus        22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf----------a~IylvdideV-----------------------~~   68 (142)
T KOG3414|consen   22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF----------AVIYLVDIDEV-----------------------PD   68 (142)
T ss_pred             cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc----------eEEEEEecchh-----------------------hh
Confidence            3588999999999999999999999999888743          44555555532                       67


Q ss_pred             HHHhcCcCccceEE-EECCCCcEEeccccchhhc
Q 014225          305 LTKYFDVQGIPCLV-IIGPEGKTVTKQGRNLINL  337 (428)
Q Consensus       305 ~~~~~~v~~~P~~~-lid~~G~i~~~~~~~~~~~  337 (428)
                      +.+.|++...|+++ +++....-+..+.++....
T Consensus        69 ~~~~~~l~~p~tvmfFfn~kHmkiD~gtgdn~Ki  102 (142)
T KOG3414|consen   69 FVKMYELYDPPTVMFFFNNKHMKIDLGTGDNNKI  102 (142)
T ss_pred             hhhhhcccCCceEEEEEcCceEEEeeCCCCCceE
Confidence            88889999988764 5555555555555544333

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=94.32  E-value=0.15  Score=43.90  Aligned_cols=52  Identities=17%  Similarity=0.208  Sum_probs=39.9

Q ss_pred             eecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC
Q 014225          218 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD  277 (428)
Q Consensus       218 ~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d  277 (428)
                      .+.+..-.++++|+.|+...||+|..+.+.+.++.+++-+.        ..+.++...+-
T Consensus         4 ~~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~--------~~v~~~~~~~~   55 (162)
T PF13462_consen    4 DPTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDP--------GKVKFVFRPVP   55 (162)
T ss_dssp             SEEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT--------TTEEEEEEESS
T ss_pred             CCeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCC--------CceEEEEEEcc
Confidence            34566667789999999999999999999999999998222        25888888763

...

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=94.24  E-value=0.18  Score=43.40  Aligned_cols=51  Identities=18%  Similarity=0.327  Sum_probs=40.0

Q ss_pred             EEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEec
Q 014225           53 QVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS  104 (428)
Q Consensus        53 ~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~  104 (428)
                      .+.+..-.++++|+.|+...||+|..+.+.+.++.+++-+.| ++.++...+
T Consensus         4 ~~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~~~   54 (162)
T PF13462_consen    4 DPTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFRPV   54 (162)
T ss_dssp             SEEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEEES
T ss_pred             CCeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEEEc
Confidence            345666677999999999999999999999999999984433 488887755

...

>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]

Probab=94.11  E-value=0.16  Score=53.33  Aligned_cols=80  Identities=21%  Similarity=0.271  Sum_probs=53.6

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcc
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT  301 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~  301 (428)
                      .+||++|....+||.+|+-|...-   .++++-+..            .+|.|.+|++.-              |..+..
T Consensus        42 edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~------------~FV~IKVDREER--------------PDvD~~   95 (667)
T COG1331          42 EDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE------------NFVPVKVDREER--------------PDVDSL   95 (667)
T ss_pred             hCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh------------CceeeeEChhhc--------------cCHHHH
Confidence            478999999999999999876532   234444443            378888887531              111111


Q ss_pred             hhHHHHhc-CcCccceEEEECCCCcEEecc
Q 014225          302 IKELTKYF-DVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       302 ~~~~~~~~-~v~~~P~~~lid~~G~i~~~~  330 (428)
                      ...+++.. |-.+.|-++++.|||+..+..
T Consensus        96 Ym~~~q~~tG~GGWPLtVfLTPd~kPFfag  125 (667)
T COG1331          96 YMNASQAITGQGGWPLTVFLTPDGKPFFAG  125 (667)
T ss_pred             HHHHHHHhccCCCCceeEEECCCCceeeee
Confidence            23333333 446899999999999998754

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=94.02  E-value=0.12  Score=37.51  Aligned_cols=54  Identities=20%  Similarity=0.271  Sum_probs=35.0

Q ss_pred             EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCc
Q 014225           65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP  144 (428)
Q Consensus        65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P  144 (428)
                      ++.|.++||++|+.....|.+.       +  +.+..++++.+.+                    ....+.+..+...+|
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~-------~--i~~~~~di~~~~~--------------------~~~~l~~~~~~~~~P   52 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESL-------G--IEFEEIDILEDGE--------------------LREELKELSGWPTVP   52 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc-------C--CcEEEEECCCCHH--------------------HHHHHHHHhCCCCcC
Confidence            4678899999999987776643       2  4455555555432                    114555556667888


Q ss_pred             eEE
Q 014225          145 CLV  147 (428)
Q Consensus       145 ~~~  147 (428)
                      +++
T Consensus        53 ~~~   55 (72)
T cd02066          53 QIF   55 (72)
T ss_pred             EEE
Confidence            664

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]

Probab=93.92  E-value=0.024  Score=53.96  Aligned_cols=33  Identities=24%  Similarity=0.675  Sum_probs=29.7

Q ss_pred             CcccccccC-CCCceeEeccCC-CCCCcccccccc
Q 014225          388 PFICCDCDE-QGSGWAYQCLEC-GYEVHPKCVRAV  420 (428)
Q Consensus       388 ~~~c~~C~~-~g~~~~~~~~~~-~~~~~~~~~~~~  420 (428)
                      .-.||.|++ .-.|=.|+|..| +|||+..|-.+.
T Consensus       152 ~v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~~  186 (278)
T KOG4582|consen  152 SVPCDNCGKPGIVGARYKCTVCPDYDLCERCEAGN  186 (278)
T ss_pred             cccCCCccCCccccceeeecCCCccchhHHhhcCC
Confidence            368999999 889999999999 899999998664

>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like

Probab=93.89  E-value=0.16  Score=45.82  Aligned_cols=99  Identities=21%  Similarity=0.401  Sum_probs=69.7

Q ss_pred             cccCCCCEEecccC-CCC--EEEEEEe-----cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhc
Q 014225           46 LLNQHGTQVKVSDL-EGK--VTALYFS-----ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRAC  117 (428)
Q Consensus        46 l~~~~G~~v~l~~~-~gk--~vlv~F~-----a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~  117 (428)
                      +...+|+ ++|.++ .|+  .++-.|-     ...|+.|...+-.+.....-+..++  +.++.||...- +.+.+|.+.
T Consensus        51 F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd--~tfa~vSraP~-~~i~afk~r  126 (211)
T PF05988_consen   51 FDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARD--TTFAVVSRAPL-EKIEAFKRR  126 (211)
T ss_pred             EeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCC--ceEEEEeCCCH-HHHHHHHHh
Confidence            6677886 999876 666  4555554     5789999999999987777888776  88888866444 558899999


Q ss_pred             CCCceecc-CChHHHHHHHhhcCC-----CCCceEEEEcC
Q 014225          118 MPWLAVPY-SDLETKKALNRKFDI-----EGIPCLVVLQP  151 (428)
Q Consensus       118 ~~~~~~~~-~d~~~~~~l~~~~~v-----~~~P~~~lid~  151 (428)
                      |+|. +|. +..+  ......|++     ...|.+-++-+
T Consensus       127 mGW~-~pw~Ss~g--s~Fn~D~~~~~~~~~~~~g~svF~R  163 (211)
T PF05988_consen  127 MGWT-FPWYSSYG--SDFNYDFGVSFDEGGEMPGLSVFLR  163 (211)
T ss_pred             cCCC-ceEEEcCC--CcccccccceeccCCCceeEEEEEE
Confidence            9997 443 2222  445555666     45676665555

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=93.82  E-value=0.13  Score=48.64  Aligned_cols=69  Identities=13%  Similarity=0.219  Sum_probs=50.0

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      ++..|||.||-+.++.|..+...|..++.+|..    +.++-|.....                        . +...|.
T Consensus       145 ~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~----vKFvkI~a~~~------------------------~-~~~~f~  195 (265)
T PF02114_consen  145 KSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE----VKFVKIRASKC------------------------P-ASENFP  195 (265)
T ss_dssp             TT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT----SEEEEEEECGC------------------------C-TTTTS-
T ss_pred             CCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc----eEEEEEehhcc------------------------C-cccCCc
Confidence            356899999999999999999999999999977    55666644221                        1 334588


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      ...+|+++++.    +|.++..
T Consensus       196 ~~~LPtllvYk----~G~l~~~  213 (265)
T PF02114_consen  196 DKNLPTLLVYK----NGDLIGN  213 (265)
T ss_dssp             TTC-SEEEEEE----TTEEEEE
T ss_pred             ccCCCEEEEEE----CCEEEEe
Confidence            89999999999    7877755

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=93.78  E-value=0.12  Score=38.91  Aligned_cols=56  Identities=13%  Similarity=0.307  Sum_probs=35.3

Q ss_pred             EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCc
Q 014225           65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP  144 (428)
Q Consensus        65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P  144 (428)
                      +..|+.+|||+|......|++       .+  +.+-.++++.+.+.                    ...+.+..+..++|
T Consensus         1 v~ly~~~~Cp~C~~a~~~L~~-------~~--i~~~~~di~~~~~~--------------------~~~~~~~~g~~~vP   51 (79)
T TIGR02181         1 VTIYTKPYCPYCTRAKALLSS-------KG--VTFTEIRVDGDPAL--------------------RDEMMQRSGRRTVP   51 (79)
T ss_pred             CEEEecCCChhHHHHHHHHHH-------cC--CCcEEEEecCCHHH--------------------HHHHHHHhCCCCcC
Confidence            356889999999997776653       34  44444455544331                    14455556778889


Q ss_pred             eEEEEc
Q 014225          145 CLVVLQ  150 (428)
Q Consensus       145 ~~~lid  150 (428)
                      .+ +++
T Consensus        52 ~i-~i~   56 (79)
T TIGR02181        52 QI-FIG   56 (79)
T ss_pred             EE-EEC
Confidence            86 444

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.78  E-value=0.039  Score=49.83  Aligned_cols=63  Identities=19%  Similarity=0.316  Sum_probs=49.7

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      +++.+++.||+.||.+|..+...+..+.+.++.    +.++.+..|                        ....+...+.
T Consensus        16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~----~~~~k~~a~------------------------~~~eis~~~~   67 (227)
T KOG0911|consen   16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKN----AQFLKLEAE------------------------EFPEISNLIA   67 (227)
T ss_pred             ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhh----heeeeehhh------------------------hhhHHHHHHH
Confidence            788999999999999999998888888888722    445544222                        2278888999


Q ss_pred             CCCCceEEEEc
Q 014225          140 IEGIPCLVVLQ  150 (428)
Q Consensus       140 v~~~P~~~lid  150 (428)
                      +.+.|.+.++-
T Consensus        68 v~~vp~~~~~~   78 (227)
T KOG0911|consen   68 VEAVPYFVFFF   78 (227)
T ss_pred             HhcCceeeeee
Confidence            99999988885

>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger

Probab=93.71  E-value=0.046  Score=37.94  Aligned_cols=36  Identities=31%  Similarity=0.619  Sum_probs=28.9

Q ss_pred             CCCcccccccCCC---CceeEeccCCCCCCccccccccC
Q 014225          386 GGPFICCDCDEQG---SGWAYQCLECGYEVHPKCVRAVD  421 (428)
Q Consensus       386 ~~~~~c~~C~~~g---~~~~~~~~~~~~~~~~~~~~~~~  421 (428)
                      ..+-.|+.|++.-   ..-.|+|..|++-+|.+|...+.
T Consensus         9 ~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~~   47 (53)
T PF00130_consen    9 SKPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKVP   47 (53)
T ss_dssp             SSTEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTSS
T ss_pred             CCCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhcC
Confidence            5678999999966   55799999999999999997654

Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=93.70  E-value=0.2  Score=37.19  Aligned_cols=35  Identities=17%  Similarity=0.237  Sum_probs=23.9

Q ss_pred             EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCCh
Q 014225           65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL  108 (428)
Q Consensus        65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~  108 (428)
                      ++.|..+|||+|......|++       .+  +.+..++++.+.
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~-------~~--i~~~~i~i~~~~   36 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDK-------KG--VDYEEIDVDGDP   36 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHH-------CC--CcEEEEECCCCH
Confidence            467889999999997666653       34  555556666553

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=93.61  E-value=0.26  Score=43.58  Aligned_cols=73  Identities=15%  Similarity=0.189  Sum_probs=58.9

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      +...||+-||-+.-..|+-+-.+|+.|++++-+           ..++-|+....                       .-
T Consensus        83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-----------TrFikvnae~~-----------------------PF  128 (211)
T KOG1672|consen   83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-----------TRFIKVNAEKA-----------------------PF  128 (211)
T ss_pred             cCceEEEEEEcCCCcceehHHHHHHHHHHhccc-----------ceEEEEecccC-----------------------ce
Confidence            456799999999888999999999999988754           36777766533                       45


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecccc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~~~  332 (428)
                      +...++|+.+|++.++ ++|+.+.+..|
T Consensus       129 lv~kL~IkVLP~v~l~-k~g~~~D~iVG  155 (211)
T KOG1672|consen  129 LVTKLNIKVLPTVALF-KNGKTVDYVVG  155 (211)
T ss_pred             eeeeeeeeEeeeEEEE-EcCEEEEEEee
Confidence            6788999999999999 99988876444

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=93.29  E-value=0.24  Score=36.67  Aligned_cols=56  Identities=16%  Similarity=0.176  Sum_probs=35.2

Q ss_pred             EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCc
Q 014225           65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP  144 (428)
Q Consensus        65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P  144 (428)
                      ++.|..+||+.|++..-.|++       .|  +.+..++++.+.+.                    ...+.+..+-..+|
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~-------~g--i~~~~~di~~~~~~--------------------~~el~~~~g~~~vP   53 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLRE-------KG--LPYVEINIDIFPER--------------------KAELEERTGSSVVP   53 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHH-------CC--CceEEEECCCCHHH--------------------HHHHHHHhCCCCcC
Confidence            456788999999997665553       44  55556666655431                    14555555667778


Q ss_pred             eEEEEc
Q 014225          145 CLVVLQ  150 (428)
Q Consensus       145 ~~~lid  150 (428)
                      .+ +++
T Consensus        54 ~v-~i~   58 (73)
T cd03027          54 QI-FFN   58 (73)
T ss_pred             EE-EEC
Confidence            76 444

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>PRK10638 glutaredoxin 3; Provisional

Probab=93.27  E-value=0.4  Score=36.55  Aligned_cols=61  Identities=16%  Similarity=0.217  Sum_probs=38.7

Q ss_pred             EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225          230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF  309 (428)
Q Consensus       230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  309 (428)
                      +..|..+|||+|.+....|.+.                ++.+..+.++.+.+.                   ..++.+..
T Consensus         4 v~ly~~~~Cp~C~~a~~~L~~~----------------gi~y~~~dv~~~~~~-------------------~~~l~~~~   48 (83)
T PRK10638          4 VEIYTKATCPFCHRAKALLNSK----------------GVSFQEIPIDGDAAK-------------------REEMIKRS   48 (83)
T ss_pred             EEEEECCCChhHHHHHHHHHHc----------------CCCcEEEECCCCHHH-------------------HHHHHHHh
Confidence            4466789999999987777642                344455566644321                   13455556


Q ss_pred             CcCccceEEEECCCCcEEe
Q 014225          310 DVQGIPCLVIIGPEGKTVT  328 (428)
Q Consensus       310 ~v~~~P~~~lid~~G~i~~  328 (428)
                      |...+|++++   +|+.+.
T Consensus        49 g~~~vP~i~~---~g~~ig   64 (83)
T PRK10638         49 GRTTVPQIFI---DAQHIG   64 (83)
T ss_pred             CCCCcCEEEE---CCEEEe
Confidence            8889998754   466653

>cd02337 ZZ_CBP Zinc finger, ZZ type

Probab=92.99  E-value=0.041  Score=36.10  Aligned_cols=31  Identities=19%  Similarity=0.730  Sum_probs=26.1

Q ss_pred             cccccccCCCCceeEeccCC-CCCCcccccccc
Q 014225          389 FICCDCDEQGSGWAYQCLEC-GYEVHPKCVRAV  420 (428)
Q Consensus       389 ~~c~~C~~~g~~~~~~~~~~-~~~~~~~~~~~~  420 (428)
                      |-|+.|... .|-.|+|..| +|||...|-...
T Consensus         1 y~C~~C~~~-~~~r~~C~~C~dfDLC~~C~~~~   32 (41)
T cd02337           1 YTCNECKHH-VETRWHCTVCEDYDLCITCYNTK   32 (41)
T ss_pred             CcCCCCCCc-CCCceECCCCcchhhHHHHhCCC
Confidence            569999884 4699999999 899999998653

Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=92.94  E-value=0.31  Score=36.07  Aligned_cols=60  Identities=13%  Similarity=0.155  Sum_probs=37.3

Q ss_pred             EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225          230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF  309 (428)
Q Consensus       230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  309 (428)
                      +..|..+|||+|......|.+       .         ++.+-.++++.+.+..                   .++.+.+
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~-------~---------~i~~~~i~i~~~~~~~-------------------~~~~~~~   46 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDK-------K---------GVDYEEIDVDGDPALR-------------------EEMINRS   46 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHH-------C---------CCcEEEEECCCCHHHH-------------------HHHHHHh
Confidence            456788999999998777764       2         3555566666553221                   3344455


Q ss_pred             CcC-ccceEEEECCCCcEE
Q 014225          310 DVQ-GIPCLVIIGPEGKTV  327 (428)
Q Consensus       310 ~v~-~~P~~~lid~~G~i~  327 (428)
                      +.. ++|.++ +  +|+.+
T Consensus        47 ~~~~~vP~v~-i--~g~~i   62 (75)
T cd03418          47 GGRRTVPQIF-I--GDVHI   62 (75)
T ss_pred             CCCCccCEEE-E--CCEEE
Confidence            666 899774 4  34444

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=92.83  E-value=0.44  Score=35.13  Aligned_cols=55  Identities=16%  Similarity=0.295  Sum_probs=35.0

Q ss_pred             EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCc
Q 014225           65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP  144 (428)
Q Consensus        65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P  144 (428)
                      ++.|..+|||+|.+..-.|.+       .+  +.+..++++.+..                     ...+.+..|...+|
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~-------~~--i~~~~~~v~~~~~---------------------~~~~~~~~g~~~vP   52 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQE-------NG--ISYEEIPLGKDIT---------------------GRSLRAVTGAMTVP   52 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHH-------cC--CCcEEEECCCChh---------------------HHHHHHHhCCCCcC
Confidence            567889999999997655553       34  4455555554421                     03444556778899


Q ss_pred             eEEEEc
Q 014225          145 CLVVLQ  150 (428)
Q Consensus       145 ~~~lid  150 (428)
                      .+ +++
T Consensus        53 ~i-fi~   57 (72)
T cd03029          53 QV-FID   57 (72)
T ss_pred             eE-EEC
Confidence            86 455

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=92.67  E-value=0.24  Score=37.26  Aligned_cols=59  Identities=17%  Similarity=0.255  Sum_probs=37.2

Q ss_pred             EEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhcC
Q 014225          231 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFD  310 (428)
Q Consensus       231 l~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  310 (428)
                      ..|+.+|||+|......|.+.                ++.+-.++++.+.+.                   ..++.+..|
T Consensus         2 ~ly~~~~Cp~C~~a~~~L~~~----------------~i~~~~~di~~~~~~-------------------~~~~~~~~g   46 (79)
T TIGR02181         2 TIYTKPYCPYCTRAKALLSSK----------------GVTFTEIRVDGDPAL-------------------RDEMMQRSG   46 (79)
T ss_pred             EEEecCCChhHHHHHHHHHHc----------------CCCcEEEEecCCHHH-------------------HHHHHHHhC
Confidence            467889999999988877642                244444555544321                   134455567


Q ss_pred             cCccceEEEECCCCcEE
Q 014225          311 VQGIPCLVIIGPEGKTV  327 (428)
Q Consensus       311 v~~~P~~~lid~~G~i~  327 (428)
                      ..++|+++ +  +|+.+
T Consensus        47 ~~~vP~i~-i--~g~~i   60 (79)
T TIGR02181        47 RRTVPQIF-I--GDVHV   60 (79)
T ss_pred             CCCcCEEE-E--CCEEE
Confidence            88999974 4  35544

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=92.64  E-value=0.69  Score=37.09  Aligned_cols=78  Identities=13%  Similarity=0.228  Sum_probs=52.6

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      +.++++|+=.++.||...+....+++.++...+.   +.+..+.+-.                    ..+....+++.||
T Consensus        18 ~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~---~~~y~l~v~~--------------------~R~vSn~IAe~~~   74 (105)
T PF11009_consen   18 KEKPVLIFKHSTRCPISAMALREFEKFWEESPDE---IPVYYLDVIE--------------------YRPVSNAIAEDFG   74 (105)
T ss_dssp             --SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-------EEEEEGGG--------------------GHHHHHHHHHHHT
T ss_pred             ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc---ceEEEEEEEe--------------------CchhHHHHHHHhC
Confidence            4689999999999999999999999888887653   5555554322                    2333489999999


Q ss_pred             CCC-CceEEEEcCCCCCCCcccccch
Q 014225          140 IEG-IPCLVVLQPYDDKDDATLHDGV  164 (428)
Q Consensus       140 v~~-~P~~~lid~~~~dG~i~~~~~~  164 (428)
                      |.. -|..++|.    ||+++....-
T Consensus        75 V~HeSPQ~ili~----~g~~v~~aSH   96 (105)
T PF11009_consen   75 VKHESPQVILIK----NGKVVWHASH   96 (105)
T ss_dssp             ----SSEEEEEE----TTEEEEEEEG
T ss_pred             CCcCCCcEEEEE----CCEEEEECcc
Confidence            974 79999999    7988866443

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>cd00029 C1 Protein kinase C conserved region 1 (C1)

Probab=92.60  E-value=0.07  Score=36.31  Aligned_cols=35  Identities=29%  Similarity=0.564  Sum_probs=29.9

Q ss_pred             CCcccccccCCCCc---eeEeccCCCCCCccccccccC
Q 014225          387 GPFICCDCDEQGSG---WAYQCLECGYEVHPKCVRAVD  421 (428)
Q Consensus       387 ~~~~c~~C~~~g~~---~~~~~~~~~~~~~~~~~~~~~  421 (428)
                      .+..|.+|++.-.+   ..|+|..|++-.|.+|...+.
T Consensus        10 ~~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~v~   47 (50)
T cd00029          10 KPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADKVP   47 (50)
T ss_pred             CCCChhhcchhhhccccceeEcCCCCCchhhhhhccCC
Confidence            46789999996654   999999999999999997654

Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=92.46  E-value=0.43  Score=37.75  Aligned_cols=63  Identities=21%  Similarity=0.284  Sum_probs=37.5

Q ss_pred             cEEEEEEe----ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcch
Q 014225          227 KTVGLYFS----ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI  302 (428)
Q Consensus       227 k~vll~F~----a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~  302 (428)
                      +.|+|+-.    .+|||+|.+....|.++                ++.+..+.++.+.+ .                  .
T Consensus        12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~----------------~i~~~~~di~~~~~-~------------------~   56 (97)
T TIGR00365        12 NPVVLYMKGTPQFPQCGFSARAVQILKAC----------------GVPFAYVNVLEDPE-I------------------R   56 (97)
T ss_pred             CCEEEEEccCCCCCCCchHHHHHHHHHHc----------------CCCEEEEECCCCHH-H------------------H
Confidence            44555433    28999999887766542                24445556654432 1                  1


Q ss_pred             hHHHHhcCcCccceEEEECCCCcEE
Q 014225          303 KELTKYFDVQGIPCLVIIGPEGKTV  327 (428)
Q Consensus       303 ~~~~~~~~v~~~P~~~lid~~G~i~  327 (428)
                      ..+.+..|...+|.+| ||  |+.+
T Consensus        57 ~~l~~~tg~~tvP~vf-i~--g~~i   78 (97)
T TIGR00365        57 QGIKEYSNWPTIPQLY-VK--GEFV   78 (97)
T ss_pred             HHHHHHhCCCCCCEEE-EC--CEEE
Confidence            3455556778999885 53  5544

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=92.44  E-value=0.44  Score=37.08  Aligned_cols=64  Identities=19%  Similarity=0.259  Sum_probs=37.8

Q ss_pred             CcEEEEEEec----cCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcc
Q 014225          226 GKTVGLYFSA----RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT  301 (428)
Q Consensus       226 gk~vll~F~a----~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~  301 (428)
                      +++|+|+--.    +|||+|.+....|.+.                ++.+-.+.++.+.+ .                  
T Consensus         7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~----------------~i~y~~idv~~~~~-~------------------   51 (90)
T cd03028           7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL----------------GVDFGTFDILEDEE-V------------------   51 (90)
T ss_pred             cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc----------------CCCeEEEEcCCCHH-H------------------
Confidence            4455554332    6999999887766653                23344445544421 1                  


Q ss_pred             hhHHHHhcCcCccceEEEECCCCcEE
Q 014225          302 IKELTKYFDVQGIPCLVIIGPEGKTV  327 (428)
Q Consensus       302 ~~~~~~~~~v~~~P~~~lid~~G~i~  327 (428)
                      ..++.+..|...+|.+| |  +|+.+
T Consensus        52 ~~~l~~~~g~~tvP~vf-i--~g~~i   74 (90)
T cd03028          52 RQGLKEYSNWPTFPQLY-V--NGELV   74 (90)
T ss_pred             HHHHHHHhCCCCCCEEE-E--CCEEE
Confidence            24556666888999985 4  35554

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=92.41  E-value=0.43  Score=37.15  Aligned_cols=61  Identities=13%  Similarity=0.138  Sum_probs=35.5

Q ss_pred             CCCEEEEEEec----CCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHH
Q 014225           60 EGKVTALYFSA----NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN  135 (428)
Q Consensus        60 ~gk~vlv~F~a----~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~  135 (428)
                      +++.|+|+=-.    +|||+|......|.+       .+  +.+..++++.+.+                    ....+.
T Consensus         6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~-------~~--i~y~~idv~~~~~--------------------~~~~l~   56 (90)
T cd03028           6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQ-------LG--VDFGTFDILEDEE--------------------VRQGLK   56 (90)
T ss_pred             ccCCEEEEEcCCCCCCCCcHHHHHHHHHHH-------cC--CCeEEEEcCCCHH--------------------HHHHHH
Confidence            44555555332    699999995554443       33  4444445544422                    125666


Q ss_pred             hhcCCCCCceEEEEc
Q 014225          136 RKFDIEGIPCLVVLQ  150 (428)
Q Consensus       136 ~~~~v~~~P~~~lid  150 (428)
                      +..|-..+|.+ +++
T Consensus        57 ~~~g~~tvP~v-fi~   70 (90)
T cd03028          57 EYSNWPTFPQL-YVN   70 (90)
T ss_pred             HHhCCCCCCEE-EEC
Confidence            66777889986 455

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=92.31  E-value=0.46  Score=37.59  Aligned_cols=60  Identities=17%  Similarity=0.202  Sum_probs=34.3

Q ss_pred             CCEEEEEEe----cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHh
Q 014225           61 GKVTALYFS----ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR  136 (428)
Q Consensus        61 gk~vlv~F~----a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~  136 (428)
                      ...|+|+-.    ++|||+|.+....|.+       .|  +.+..++++.+.+                    ....+.+
T Consensus        11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~-------~~--i~~~~~di~~~~~--------------------~~~~l~~   61 (97)
T TIGR00365        11 ENPVVLYMKGTPQFPQCGFSARAVQILKA-------CG--VPFAYVNVLEDPE--------------------IRQGIKE   61 (97)
T ss_pred             cCCEEEEEccCCCCCCCchHHHHHHHHHH-------cC--CCEEEEECCCCHH--------------------HHHHHHH
Confidence            344555543    3899999996554443       34  4444555554432                    1145555


Q ss_pred             hcCCCCCceEEEEc
Q 014225          137 KFDIEGIPCLVVLQ  150 (428)
Q Consensus       137 ~~~v~~~P~~~lid  150 (428)
                      ..|-..+|.++ |+
T Consensus        62 ~tg~~tvP~vf-i~   74 (97)
T TIGR00365        62 YSNWPTIPQLY-VK   74 (97)
T ss_pred             HhCCCCCCEEE-EC
Confidence            56777889765 44

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=92.08  E-value=1  Score=37.81  Aligned_cols=76  Identities=17%  Similarity=0.276  Sum_probs=53.7

Q ss_pred             hhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhcCcC--ccceEEEE
Q 014225          243 KFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ--GIPCLVII  320 (428)
Q Consensus       243 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~--~~P~~~li  320 (428)
                      .....|.+++++|+++         .+.+++++.+..                       ..+.+.||+.  .+|+++++
T Consensus        41 ~~~~~l~~vAk~~kgk---------~i~Fv~vd~~~~-----------------------~~~~~~fgl~~~~~P~v~i~   88 (130)
T cd02983          41 KYLEILKSVAEKFKKK---------PWGWLWTEAGAQ-----------------------LDLEEALNIGGFGYPAMVAI   88 (130)
T ss_pred             HHHHHHHHHHHHhcCC---------cEEEEEEeCccc-----------------------HHHHHHcCCCccCCCEEEEE
Confidence            3677888899999865         478888887754                       4488889985  49999999


Q ss_pred             CCCCcEEec-cccchhhcccccCCCCChHHHHHHHHHHHHHHhcCC
Q 014225          321 GPEGKTVTK-QGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLP  365 (428)
Q Consensus       321 d~~G~i~~~-~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~~  365 (428)
                      +.++. .+. ..+           +++.   +.|.+.+++.+.+..
T Consensus        89 ~~~~~-KY~~~~~-----------~~t~---e~i~~Fv~~~l~Gkl  119 (130)
T cd02983          89 NFRKM-KFATLKG-----------SFSE---DGINEFLRELSYGRG  119 (130)
T ss_pred             ecccC-ccccccC-----------ccCH---HHHHHHHHHHHcCCc
Confidence            88765 443 111           3444   566777877777653

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=91.99  E-value=0.48  Score=35.07  Aligned_cols=61  Identities=18%  Similarity=0.138  Sum_probs=39.3

Q ss_pred             EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225          230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF  309 (428)
Q Consensus       230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  309 (428)
                      +..|..+|||+|++....|.+       .         ++.+..+.++.+.+.                   ..++.+..
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~-------~---------gi~~~~~di~~~~~~-------------------~~el~~~~   47 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLRE-------K---------GLPYVEINIDIFPER-------------------KAELEERT   47 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHH-------C---------CCceEEEECCCCHHH-------------------HHHHHHHh
Confidence            456778999999998777764       2         455666677654321                   24556666


Q ss_pred             CcCccceEEEECCCCcEEe
Q 014225          310 DVQGIPCLVIIGPEGKTVT  328 (428)
Q Consensus       310 ~v~~~P~~~lid~~G~i~~  328 (428)
                      +...+|.++ +|  |+.+.
T Consensus        48 g~~~vP~v~-i~--~~~iG   63 (73)
T cd03027          48 GSSVVPQIF-FN--EKLVG   63 (73)
T ss_pred             CCCCcCEEE-EC--CEEEe
Confidence            778889884 43  44443

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme

Probab=91.66  E-value=0.76  Score=37.37  Aligned_cols=53  Identities=11%  Similarity=0.199  Sum_probs=35.2

Q ss_pred             HHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhcCc
Q 014225          248 LLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDV  311 (428)
Q Consensus       248 l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  311 (428)
                      |.+...++.+.         ++.+|.|.+. +.+..++|++... .++|+..|.+..+-+.+|.
T Consensus         2 L~~~~~~l~~~---------gv~lv~I~~g-~~~~~~~f~~~~~-~p~~ly~D~~~~lY~~lg~   54 (115)
T PF13911_consen    2 LSRRKPELEAA---------GVKLVVIGCG-SPEGIEKFCELTG-FPFPLYVDPERKLYKALGL   54 (115)
T ss_pred             hhHhHHHHHHc---------CCeEEEEEcC-CHHHHHHHHhccC-CCCcEEEeCcHHHHHHhCC
Confidence            34455566655         7899999988 4444888886644 4677777766666555554

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=91.64  E-value=0.85  Score=34.67  Aligned_cols=20  Identities=15%  Similarity=0.232  Sum_probs=15.5

Q ss_pred             EEEEecCCChhhhhhHHHHH
Q 014225           65 ALYFSANWYPPCGNFTGVLV   84 (428)
Q Consensus        65 lv~F~a~wC~~C~~~~p~l~   84 (428)
                      ++.|.-++||+|.+....|.
T Consensus         3 v~iyt~~~CPyC~~ak~~L~   22 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLD   22 (80)
T ss_pred             EEEEECCCCchHHHHHHHHH
Confidence            56778899999999665554

>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=91.49  E-value=0.047  Score=49.61  Aligned_cols=69  Identities=17%  Similarity=0.325  Sum_probs=50.6

Q ss_pred             EEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCC
Q 014225           63 VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEG  142 (428)
Q Consensus        63 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~  142 (428)
                      -.++.|+|+|||.|....|.+.+.+.--.+-+  +.+..|.+-.+                        .-+.-+|=+..
T Consensus        41 ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~--v~va~VDvt~n------------------------pgLsGRF~vta   94 (248)
T KOG0913|consen   41 EWMIEFGAPWCPSCSDLIPHLENFATVSLDLG--VKVAKVDVTTN------------------------PGLSGRFLVTA   94 (248)
T ss_pred             HHHHHhcCCCCccccchHHHHhccCCccCCCc--eeEEEEEEEec------------------------cccceeeEEEe
Confidence            57889999999999999999998877655554  55555533211                        34556688899


Q ss_pred             CceEEEEcCCCCCCCcccc
Q 014225          143 IPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       143 ~P~~~lid~~~~dG~i~~~  161 (428)
                      +|+++=+.    ||....+
T Consensus        95 LptIYHvk----DGeFrry  109 (248)
T KOG0913|consen   95 LPTIYHVK----DGEFRRY  109 (248)
T ss_pred             cceEEEee----ccccccc
Confidence            99999887    7865533

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=91.45  E-value=0.9  Score=34.54  Aligned_cols=20  Identities=15%  Similarity=0.177  Sum_probs=15.9

Q ss_pred             EEEEeccCChhHHhhhHHHH
Q 014225          230 GLYFSARWCIPCEKFMPKLL  249 (428)
Q Consensus       230 ll~F~a~wC~~C~~~~~~l~  249 (428)
                      +..|..++||+|.+....|.
T Consensus         3 v~iyt~~~CPyC~~ak~~L~   22 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLD   22 (80)
T ss_pred             EEEEECCCCchHHHHHHHHH
Confidence            45677899999998877666

>PRK10329 glutaredoxin-like protein; Provisional

Probab=91.18  E-value=0.65  Score=35.41  Aligned_cols=36  Identities=14%  Similarity=0.262  Sum_probs=24.9

Q ss_pred             EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChH
Q 014225           65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLN  109 (428)
Q Consensus        65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~  109 (428)
                      +..|..+||++|.+..-.|.       +.|  +.+-.++++.+.+
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~-------~~g--I~~~~idi~~~~~   38 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAME-------SRG--FDFEMINVDRVPE   38 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHH-------HCC--CceEEEECCCCHH
Confidence            56788999999999666553       345  6666666665543

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=91.02  E-value=6.4  Score=32.78  Aligned_cols=75  Identities=20%  Similarity=0.328  Sum_probs=51.2

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      ..|+|+|-|...|-|.|.++-..|.+++++.+.-          ..|..+.++.-                       ..
T Consensus        19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~----------a~IY~vDi~~V-----------------------pd   65 (133)
T PF02966_consen   19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF----------AVIYLVDIDEV-----------------------PD   65 (133)
T ss_dssp             SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT----------EEEEEEETTTT-----------------------HC
T ss_pred             CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc----------eEEEEEEcccc-----------------------hh
Confidence            3589999999999999999999999999888744          56666777643                       55


Q ss_pred             HHHhcCcCccceEEEE--CCCCcEEeccccc
Q 014225          305 LTKYFDVQGIPCLVII--GPEGKTVTKQGRN  333 (428)
Q Consensus       305 ~~~~~~v~~~P~~~li--d~~G~i~~~~~~~  333 (428)
                      +.+.|.+. .|.++++  .....-+.-+.++
T Consensus        66 fn~~yel~-dP~tvmFF~rnkhm~vD~Gtgn   95 (133)
T PF02966_consen   66 FNQMYELY-DPCTVMFFFRNKHMMVDFGTGN   95 (133)
T ss_dssp             CHHHTTS--SSEEEEEEETTEEEEEESSSSS
T ss_pred             hhcccccC-CCeEEEEEecCeEEEEEecCCC
Confidence            67788888 7754333  3333334443333

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=90.84  E-value=0.28  Score=43.06  Aligned_cols=34  Identities=26%  Similarity=0.405  Sum_probs=30.0

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhh
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQN  258 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~  258 (428)
                      .+++.|+.|+...||+|..+.+.+.++.+++..+
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~   47 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKD   47 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCC
Confidence            5788999999999999999999999988887543

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=90.81  E-value=1  Score=34.24  Aligned_cols=56  Identities=27%  Similarity=0.373  Sum_probs=41.9

Q ss_pred             EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225          230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF  309 (428)
Q Consensus       230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  309 (428)
                      |+.|..+.|+-|......|.++....            .+.+-.|+++.+                       .++.+.|
T Consensus         2 l~l~~k~~C~LC~~a~~~L~~~~~~~------------~~~l~~vDI~~d-----------------------~~l~~~Y   46 (81)
T PF05768_consen    2 LTLYTKPGCHLCDEAKEILEEVAAEF------------PFELEEVDIDED-----------------------PELFEKY   46 (81)
T ss_dssp             EEEEE-SSSHHHHHHHHHHHHCCTTS------------TCEEEEEETTTT-----------------------HHHHHHS
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHhhc------------CceEEEEECCCC-----------------------HHHHHHh
Confidence            56778899999999888877654332            578889999855                       5688899


Q ss_pred             CcCccceEEEEC
Q 014225          310 DVQGIPCLVIIG  321 (428)
Q Consensus       310 ~v~~~P~~~lid  321 (428)
                      +. .+|.+.+-+
T Consensus        47 ~~-~IPVl~~~~   57 (81)
T PF05768_consen   47 GY-RIPVLHIDG   57 (81)
T ss_dssp             CT-STSEEEETT
T ss_pred             cC-CCCEEEEcC
Confidence            95 799876554

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=90.77  E-value=0.85  Score=36.60  Aligned_cols=15  Identities=27%  Similarity=0.438  Sum_probs=12.4

Q ss_pred             EEEEecCCChhhhhh
Q 014225           65 ALYFSANWYPPCGNF   79 (428)
Q Consensus        65 lv~F~a~wC~~C~~~   79 (428)
                      +|.|.-+||++|.+.
T Consensus        16 VVifSKs~C~~c~~~   30 (104)
T KOG1752|consen   16 VVIFSKSSCPYCHRA   30 (104)
T ss_pred             EEEEECCcCchHHHH
Confidence            456788999999993

>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7

Probab=90.75  E-value=0.091  Score=36.59  Aligned_cols=26  Identities=38%  Similarity=0.946  Sum_probs=22.6

Q ss_pred             CcccccccC---CCCceeEeccCCCCCCc
Q 014225          388 PFICCDCDE---QGSGWAYQCLECGYEVH  413 (428)
Q Consensus       388 ~~~c~~C~~---~g~~~~~~~~~~~~~~~  413 (428)
                      -|+|+.|+.   ..++=+.+|.+|+|.+-
T Consensus        20 iYiCgdC~~en~lk~~D~irCReCG~RIl   48 (62)
T KOG3507|consen   20 IYICGDCGQENTLKRGDVIRCRECGYRIL   48 (62)
T ss_pred             EEEeccccccccccCCCcEehhhcchHHH
Confidence            599999987   56889999999999853

0 [Transcription]

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=90.71  E-value=0.46  Score=49.70  Aligned_cols=81  Identities=15%  Similarity=0.159  Sum_probs=54.8

Q ss_pred             ccccCc---cccCCCCEEeccc--------CCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCCh
Q 014225           40 SKDRDY---LLNQHGTQVKVSD--------LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL  108 (428)
Q Consensus        40 ~~~pdf---l~~~~G~~v~l~~--------~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~  108 (428)
                      -+...|   +.+.+|....|++        +.+++-+..|..+.||+|......+++++....    ++..-.|  |...
T Consensus        84 ~Ef~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~----~i~~~~i--d~~~  157 (517)
T PRK15317         84 HEFTSLVLALLQVGGHPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP----NITHTMI--DGAL  157 (517)
T ss_pred             HHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC----CceEEEE--Echh
Confidence            334445   4456666666652        345567889999999999988888877766522    3554444  3332


Q ss_pred             HHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCceEEE
Q 014225          109 NAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVV  148 (428)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~l  148 (428)
                      .                      .++.+.|++.++|++++
T Consensus       158 ~----------------------~~~~~~~~v~~VP~~~i  175 (517)
T PRK15317        158 F----------------------QDEVEARNIMAVPTVFL  175 (517)
T ss_pred             C----------------------HhHHHhcCCcccCEEEE
Confidence            2                      77888899999998865

>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=90.66  E-value=0.74  Score=36.93  Aligned_cols=21  Identities=24%  Similarity=0.312  Sum_probs=15.3

Q ss_pred             EEEEeccCChhHHhhhHHHHH
Q 014225          230 GLYFSARWCIPCEKFMPKLLS  250 (428)
Q Consensus       230 ll~F~a~wC~~C~~~~~~l~~  250 (428)
                      +|.|.-+|||+|......|.+
T Consensus        16 VVifSKs~C~~c~~~k~ll~~   36 (104)
T KOG1752|consen   16 VVIFSKSSCPYCHRAKELLSD   36 (104)
T ss_pred             EEEEECCcCchHHHHHHHHHh
Confidence            466889999999985444443

>PRK10638 glutaredoxin 3; Provisional

Probab=90.50  E-value=0.66  Score=35.32  Aligned_cols=56  Identities=13%  Similarity=0.265  Sum_probs=34.6

Q ss_pred             EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCc
Q 014225           65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP  144 (428)
Q Consensus        65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P  144 (428)
                      ++.|..+||++|++..-.|.+       .+  +....+++|.+.+                    ....+.+..+...+|
T Consensus         4 v~ly~~~~Cp~C~~a~~~L~~-------~g--i~y~~~dv~~~~~--------------------~~~~l~~~~g~~~vP   54 (83)
T PRK10638          4 VEIYTKATCPFCHRAKALLNS-------KG--VSFQEIPIDGDAA--------------------KREEMIKRSGRTTVP   54 (83)
T ss_pred             EEEEECCCChhHHHHHHHHHH-------cC--CCcEEEECCCCHH--------------------HHHHHHHHhCCCCcC
Confidence            456778999999996665553       34  4444455654432                    114455566778899


Q ss_pred             eEEEEc
Q 014225          145 CLVVLQ  150 (428)
Q Consensus       145 ~~~lid  150 (428)
                      .+ +++
T Consensus        55 ~i-~~~   59 (83)
T PRK10638         55 QI-FID   59 (83)
T ss_pred             EE-EEC
Confidence            66 344

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=90.09  E-value=0.43  Score=41.83  Aligned_cols=40  Identities=25%  Similarity=0.336  Sum_probs=33.4

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEE
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFV  102 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~v  102 (428)
                      .+++.++.|+...||+|..+.+.+.++.++++++   +.+..+
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~---v~~~~~   53 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKD---VKFEKV   53 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCC---ceEEEc
Confidence            6789999999999999999999999999988443   555443

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=89.64  E-value=0.99  Score=33.28  Aligned_cols=34  Identities=21%  Similarity=0.240  Sum_probs=23.7

Q ss_pred             EEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCCh
Q 014225           66 LYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL  108 (428)
Q Consensus        66 v~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~  108 (428)
                      ..|..++||+|+.....|++       .|  +.+-.++++.+.
T Consensus         2 ~ly~~~~Cp~C~~ak~~L~~-------~~--i~~~~~di~~~~   35 (72)
T TIGR02194         2 TVYSKNNCVQCKMTKKALEE-------HG--IAFEEINIDEQP   35 (72)
T ss_pred             EEEeCCCCHHHHHHHHHHHH-------CC--CceEEEECCCCH
Confidence            46789999999997766653       34  555556666554

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>KOG3414 consensus Component of the U4/U6

Probab=89.64  E-value=2.2  Score=35.11  Aligned_cols=65  Identities=18%  Similarity=0.426  Sum_probs=49.9

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      ..|+|+|-|.-.|-|-|..+-..|...++.+.+-   .+|..+.+|+.                        ..+.+.|+
T Consensus        22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf---a~IylvdideV------------------------~~~~~~~~   74 (142)
T KOG3414|consen   22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF---AVIYLVDIDEV------------------------PDFVKMYE   74 (142)
T ss_pred             cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc---eEEEEEecchh------------------------hhhhhhhc
Confidence            4589999999999999999999999999998663   33333334322                        56667788


Q ss_pred             CCCCceEEEEcC
Q 014225          140 IEGIPCLVVLQP  151 (428)
Q Consensus       140 v~~~P~~~lid~  151 (428)
                      +...|++.++-.
T Consensus        75 l~~p~tvmfFfn   86 (142)
T KOG3414|consen   75 LYDPPTVMFFFN   86 (142)
T ss_pred             ccCCceEEEEEc
Confidence            998998877764

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]

Probab=89.19  E-value=5.6  Score=38.07  Aligned_cols=81  Identities=16%  Similarity=0.279  Sum_probs=55.9

Q ss_pred             cccCCcEEEEEEecc----CChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCcccccc
Q 014225          222 SSLVGKTVGLYFSAR----WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF  297 (428)
Q Consensus       222 ~~~~gk~vll~F~a~----wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~  297 (428)
                      ...++=-+++.|.|.    .|.-|..+..++.-+++.+...   .+. .++-++.+-.+|-+.                 
T Consensus        56 ~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~---~~~-sn~tklFF~~Vd~~e-----------------  114 (331)
T KOG2603|consen   56 PPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYN---SPF-SNGTKLFFCMVDYDE-----------------  114 (331)
T ss_pred             CCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhcc---CCC-CCcceEEEEEEeccc-----------------
Confidence            334444577777764    5999999999999999988765   111 233345555555332                 


Q ss_pred             CCcchhHHHHhcCcCccceEEEECCC-CcEE
Q 014225          298 GDPTIKELTKYFDVQGIPCLVIIGPE-GKTV  327 (428)
Q Consensus       298 ~~d~~~~~~~~~~v~~~P~~~lid~~-G~i~  327 (428)
                          ..++.+.++++..|+++++.|. |+..
T Consensus       115 ----~p~~Fq~l~ln~~P~l~~f~P~~~n~~  141 (331)
T KOG2603|consen  115 ----SPQVFQQLNLNNVPHLVLFSPAKGNKK  141 (331)
T ss_pred             ----cHHHHHHhcccCCCeEEEeCCCccccc
Confidence                3788999999999999999665 4444

>PRK10824 glutaredoxin-4; Provisional

Probab=88.49  E-value=0.86  Score=37.30  Aligned_cols=25  Identities=12%  Similarity=0.017  Sum_probs=16.1

Q ss_pred             CCEEEEEEec----CCChhhhhhHHHHHH
Q 014225           61 GKVTALYFSA----NWYPPCGNFTGVLVD   85 (428)
Q Consensus        61 gk~vlv~F~a----~wC~~C~~~~p~l~~   85 (428)
                      ...|+|+--.    +|||+|++....|++
T Consensus        14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~   42 (115)
T PRK10824         14 ENPILLYMKGSPKLPSCGFSAQAVQALSA   42 (115)
T ss_pred             cCCEEEEECCCCCCCCCchHHHHHHHHHH
Confidence            3455555443    599999996655544

>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=88.48  E-value=1.9  Score=31.96  Aligned_cols=71  Identities=20%  Similarity=0.334  Sum_probs=45.0

Q ss_pred             EEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchh--HHHHh
Q 014225          231 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK--ELTKY  308 (428)
Q Consensus       231 l~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~  308 (428)
                      ..|++..||-|......|.++.                +..=.|.+-.+...+++|++-..         ...  +-.+.
T Consensus         5 ~lfgsn~Cpdca~a~eyl~rl~----------------v~yd~VeIt~Sm~NlKrFl~lRD---------s~~~Fd~vk~   59 (85)
T COG4545           5 KLFGSNLCPDCAPAVEYLERLN----------------VDYDFVEITESMANLKRFLHLRD---------SRPEFDEVKS   59 (85)
T ss_pred             eeeccccCcchHHHHHHHHHcC----------------CCceeeehhhhhhhHHHHHhhhc---------cchhHHhhhh
Confidence            4688999999988777666543                23333444456677788776221         112  23456


Q ss_pred             cCcCccceEEEECCCCcEEe
Q 014225          309 FDVQGIPCLVIIGPEGKTVT  328 (428)
Q Consensus       309 ~~v~~~P~~~lid~~G~i~~  328 (428)
                      +|--++|.+. . .||+++-
T Consensus        60 ~gyiGIPall-~-~d~~vVl   77 (85)
T COG4545          60 NGYIGIPALL-T-DDGKVVL   77 (85)
T ss_pred             cCcccceEEE-e-CCCcEEE
Confidence            7788999874 4 6777764

>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]

Probab=88.47  E-value=0.61  Score=49.13  Aligned_cols=78  Identities=21%  Similarity=0.214  Sum_probs=51.0

Q ss_pred             CCCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChH-HHHHH
Q 014225           59 LEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLE-TKKAL  134 (428)
Q Consensus        59 ~~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~-~~~~l  134 (428)
                      -++|||+|..-.+||..|..+..+-   .++++-+.+.     +|.|.+|+.+.              |  |.+ ....+
T Consensus        41 ~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~-----FV~IKVDREER--------------P--DvD~~Ym~~   99 (667)
T COG1331          41 EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNEN-----FVPVKVDREER--------------P--DVDSLYMNA   99 (667)
T ss_pred             HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhC-----ceeeeEChhhc--------------c--CHHHHHHHH
Confidence            3689999999999999999875221   1233333333     66666776653              1  222 12344


Q ss_pred             Hhhc-CCCCCceEEEEcCCCCCCCccc
Q 014225          135 NRKF-DIEGIPCLVVLQPYDDKDDATL  160 (428)
Q Consensus       135 ~~~~-~v~~~P~~~lid~~~~dG~i~~  160 (428)
                      ++.. |-.+.|.++|+.|   ||+...
T Consensus       100 ~q~~tG~GGWPLtVfLTP---d~kPFf  123 (667)
T COG1331         100 SQAITGQGGWPLTVFLTP---DGKPFF  123 (667)
T ss_pred             HHHhccCCCCceeEEECC---CCceee
Confidence            4443 4568999999999   998864

>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.25  E-value=0.79  Score=41.37  Aligned_cols=88  Identities=20%  Similarity=0.372  Sum_probs=59.2

Q ss_pred             cccCCCCEEecccC-CCCE--EEEE-E----ecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhc
Q 014225           46 LLNQHGTQVKVSDL-EGKV--TALY-F----SANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRAC  117 (428)
Q Consensus        46 l~~~~G~~v~l~~~-~gk~--vlv~-F----~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~  117 (428)
                      +...+| +.+|.++ .||-  ++-. +    |...|+.|...+-.+.....-+...+  +.+++|+.-.. +.+..+-+.
T Consensus        57 Fe~~~G-~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~d--v~lv~VsRAPl-~~l~~~k~r  132 (247)
T COG4312          57 FETENG-KKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHD--VTLVAVSRAPL-EELVAYKRR  132 (247)
T ss_pred             eecCCc-chhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcC--ceEEEEecCcH-HHHHHHHHh
Confidence            556777 5888776 6763  3333 3    34479999999998877777777765  88998876544 458888889


Q ss_pred             CCCceec-cCChHHHHHHHhhcCC
Q 014225          118 MPWLAVP-YSDLETKKALNRKFDI  140 (428)
Q Consensus       118 ~~~~~~~-~~d~~~~~~l~~~~~v  140 (428)
                      |+|. +| ++..+  ..+-..|++
T Consensus       133 mGW~-f~w~Ss~~--s~Fn~Df~v  153 (247)
T COG4312         133 MGWQ-FPWVSSTD--SDFNRDFQV  153 (247)
T ss_pred             cCCc-ceeEeccC--ccccccccc
Confidence            9997 44 32222  445555655

>PRK10824 glutaredoxin-4; Provisional

Probab=88.19  E-value=0.97  Score=37.00  Aligned_cols=16  Identities=13%  Similarity=0.027  Sum_probs=12.8

Q ss_pred             cCChhHHhhhHHHHHH
Q 014225          236 RWCIPCEKFMPKLLSI  251 (428)
Q Consensus       236 ~wC~~C~~~~~~l~~l  251 (428)
                      ||||+|.+....|.++
T Consensus        28 p~Cpyc~~ak~lL~~~   43 (115)
T PRK10824         28 PSCGFSAQAVQALSAC   43 (115)
T ss_pred             CCCchHHHHHHHHHHc
Confidence            5999999987776654

>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains)

Probab=87.91  E-value=0.2  Score=33.76  Aligned_cols=36  Identities=31%  Similarity=0.652  Sum_probs=28.9

Q ss_pred             CCCcccccccCCCCc--eeEeccCCCCCCccccccccC
Q 014225          386 GGPFICCDCDEQGSG--WAYQCLECGYEVHPKCVRAVD  421 (428)
Q Consensus       386 ~~~~~c~~C~~~g~~--~~~~~~~~~~~~~~~~~~~~~  421 (428)
                      ..+..|.+|++.-.+  =.|+|..|++-.|.+|...+.
T Consensus         9 ~~~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~~v~   46 (49)
T smart00109        9 KKPTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAEKVP   46 (49)
T ss_pred             CCCCCccccccccCcCCCCcCCCCCCchHHHHHHhhcC
Confidence            446789999996544  279999999999999997654

Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.

>cd02336 ZZ_RSC8 Zinc finger, ZZ type

Probab=87.81  E-value=0.39  Score=32.15  Aligned_cols=33  Identities=21%  Similarity=0.618  Sum_probs=28.7

Q ss_pred             cccccccCCCCceeEeccCC-CCCCccccccccC
Q 014225          389 FICCDCDEQGSGWAYQCLEC-GYEVHPKCVRAVD  421 (428)
Q Consensus       389 ~~c~~C~~~g~~~~~~~~~~-~~~~~~~~~~~~~  421 (428)
                      |.|..|+..-..-.|||..+ +|||.+.|=.+..
T Consensus         1 y~C~~Cg~D~t~vryh~~~~~~~dLC~~CF~~G~   34 (45)
T cd02336           1 YHCFTCGNDCTRVRYHNLKAKKYDLCPSCYQEGR   34 (45)
T ss_pred             CcccCCCCccCceEEEecCCCccccChHHHhCcC
Confidence            57999999888999999999 5999999986643

Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=87.30  E-value=3.7  Score=34.14  Aligned_cols=45  Identities=27%  Similarity=0.529  Sum_probs=35.9

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED  107 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~  107 (428)
                      +.|+|+|-|.-.|-+.|..+-..|.+.+++.+.-   ..|..|.++..
T Consensus        19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~---a~IY~vDi~~V   63 (133)
T PF02966_consen   19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF---AVIYLVDIDEV   63 (133)
T ss_dssp             SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTT
T ss_pred             CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc---eEEEEEEcccc
Confidence            4699999999999999999999999999998775   55555555533

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>PF13778 DUF4174: Domain of unknown function (DUF4174)

Probab=87.10  E-value=5.3  Score=32.79  Aligned_cols=91  Identities=16%  Similarity=0.222  Sum_probs=51.7

Q ss_pred             ccccCCcE-EEEEEec-cCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccC
Q 014225          221 VSSLVGKT-VGLYFSA-RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFG  298 (428)
Q Consensus       221 l~~~~gk~-vll~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~  298 (428)
                      |++++++. +||.|-. ..-+.-..+...|.+....+.++         ++.++.|.-+....           ..-+..
T Consensus         3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eR---------di~v~~i~~~~~~~-----------~~~~~~   62 (118)
T PF13778_consen    3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDER---------DIVVIVITGDGARS-----------PGKPLS   62 (118)
T ss_pred             hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccC---------ceEEEEEeCCcccc-----------ccCcCC
Confidence            45566643 3444432 23444556666666655666665         67777774332210           001111


Q ss_pred             CcchhHHHHhcCcC-ccceEEEECCCCcEEeccc
Q 014225          299 DPTIKELTKYFDVQ-GIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       299 ~d~~~~~~~~~~v~-~~P~~~lid~~G~i~~~~~  331 (428)
                      ......+.+.|++. +.-+++||++||.+..+..
T Consensus        63 ~~~~~~lr~~l~~~~~~f~~vLiGKDG~vK~r~~   96 (118)
T PF13778_consen   63 PEDIQALRKRLRIPPGGFTVVLIGKDGGVKLRWP   96 (118)
T ss_pred             HHHHHHHHHHhCCCCCceEEEEEeCCCcEEEecC
Confidence            12346788888865 2347899999999988753

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=86.15  E-value=1.1  Score=46.81  Aligned_cols=75  Identities=16%  Similarity=0.241  Sum_probs=51.0

Q ss_pred             cccCCCCEEeccc--------CCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhc
Q 014225           46 LLNQHGTQVKVSD--------LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRAC  117 (428)
Q Consensus        46 l~~~~G~~v~l~~--------~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~  117 (428)
                      +.+.+|....|++        +.+++-+..|..+.||+|......+++++....    ++..-.  +|....        
T Consensus        94 i~~~~~~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p----~i~~~~--id~~~~--------  159 (515)
T TIGR03140        94 ILQVGGHGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP----NISHTM--IDGALF--------  159 (515)
T ss_pred             HHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC----CceEEE--EEchhC--------
Confidence            4566666666642        345677889999999999987776766665532    344333  333222        


Q ss_pred             CCCceeccCChHHHHHHHhhcCCCCCceEEE
Q 014225          118 MPWLAVPYSDLETKKALNRKFDIEGIPCLVV  148 (428)
Q Consensus       118 ~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~l  148 (428)
                                    .++.+.|++.++|++++
T Consensus       160 --------------~~~~~~~~v~~VP~~~i  176 (515)
T TIGR03140       160 --------------QDEVEALGIQGVPAVFL  176 (515)
T ss_pred             --------------HHHHHhcCCcccCEEEE
Confidence                          77889999999998875

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=85.63  E-value=6.4  Score=31.88  Aligned_cols=52  Identities=10%  Similarity=0.036  Sum_probs=37.3

Q ss_pred             HHhhhHHHHHHHHH---HHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhcCcCc--cc
Q 014225          241 CEKFMPKLLSIYQK---IKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQG--IP  315 (428)
Q Consensus       241 C~~~~~~l~~l~~~---~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~--~P  315 (428)
                      -......+.+++++   ++++          +.+|.++.+..                       ....+.||++.  .|
T Consensus        29 ~~~~~~~~~~vAk~~~~~kgk----------i~Fv~~d~~~~-----------------------~~~~~~fgl~~~~~P   75 (111)
T cd03072          29 LESLKEFKQAVARQLISEKGA----------INFLTADGDKF-----------------------RHPLLHLGKTPADLP   75 (111)
T ss_pred             HHHHHHHHHHHHHHHHhcCce----------EEEEEEechHh-----------------------hhHHHHcCCCHhHCC
Confidence            34577788888888   7754          55666655532                       33788899986  89


Q ss_pred             eEEEECCCCc
Q 014225          316 CLVIIGPEGK  325 (428)
Q Consensus       316 ~~~lid~~G~  325 (428)
                      .+.+++.++.
T Consensus        76 ~i~i~~~~~~   85 (111)
T cd03072          76 VIAIDSFRHM   85 (111)
T ss_pred             EEEEEcchhc
Confidence            9999987663

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=85.31  E-value=4.4  Score=32.90  Aligned_cols=51  Identities=10%  Similarity=0.203  Sum_probs=36.2

Q ss_pred             HHhhhHHHHHHHHHHH-hhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhcCcCc----cc
Q 014225          241 CEKFMPKLLSIYQKIK-QNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQG----IP  315 (428)
Q Consensus       241 C~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~----~P  315 (428)
                      -......+.+++++|+ ++          +.++.++.+..                       ....+.||+..    .|
T Consensus        33 ~~~~~~~~~~vAk~fk~gk----------i~Fv~~D~~~~-----------------------~~~l~~fgl~~~~~~~P   79 (111)
T cd03073          33 TNYWRNRVLKVAKDFPDRK----------LNFAVADKEDF-----------------------SHELEEFGLDFSGGEKP   79 (111)
T ss_pred             HHHHHHHHHHHHHHCcCCe----------EEEEEEcHHHH-----------------------HHHHHHcCCCcccCCCC
Confidence            3457778888888888 45          55555544422                       34678899974    89


Q ss_pred             eEEEECCCC
Q 014225          316 CLVIIGPEG  324 (428)
Q Consensus       316 ~~~lid~~G  324 (428)
                      .+.+++.++
T Consensus        80 ~~~i~~~~~   88 (111)
T cd03073          80 VVAIRTAKG   88 (111)
T ss_pred             EEEEEeCCC
Confidence            999998766

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=84.98  E-value=1.6  Score=37.09  Aligned_cols=114  Identities=16%  Similarity=0.317  Sum_probs=64.6

Q ss_pred             cccccccCc-cccC------CCC-EEeccc-CCCCEEEEEE-ecCCChhhhh-hHHHHHHHHHHHhcCCCcE-EEEEEec
Q 014225           37 LLASKDRDY-LLNQ------HGT-QVKVSD-LEGKVTALYF-SANWYPPCGN-FTGVLVDVYEELRNNGSDF-EVVFVSS  104 (428)
Q Consensus        37 ~~g~~~pdf-l~~~------~G~-~v~l~~-~~gk~vlv~F-~a~wC~~C~~-~~p~l~~l~~~~~~~~~~~-~ii~vs~  104 (428)
                      .+|++.|+- +...      .|- .++..+ ++||.|+|+= =+..-|.|.. .+|.+.+++++++.+|  + .|+.|++
T Consensus         4 ~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kG--VD~I~cVSV   81 (165)
T COG0678           4 MVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKG--VDEIYCVSV   81 (165)
T ss_pred             ccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcC--CceEEEEEe
Confidence            456666666 4433      232 244444 4787665542 2445566666 7899999999999988  4 5666777


Q ss_pred             CCCh--HHHHHHHhcC-CCceeccCChHHHHHHHhhcC-----------CCCCceEEEEcCCCCCCCccc
Q 014225          105 DEDL--NAFNNYRACM-PWLAVPYSDLETKKALNRKFD-----------IEGIPCLVVLQPYDDKDDATL  160 (428)
Q Consensus       105 D~~~--~~~~~~~~~~-~~~~~~~~d~~~~~~l~~~~~-----------v~~~P~~~lid~~~~dG~i~~  160 (428)
                      ++..  .+|.+...-. +...++..+    .++.+..|           +++.-.-.++.    ||.+..
T Consensus        82 ND~FVm~AWak~~g~~~~I~fi~Dg~----geFTk~~Gm~~d~~~~g~G~RS~RYsmvV~----nGvV~~  143 (165)
T COG0678          82 NDAFVMNAWAKSQGGEGNIKFIPDGN----GEFTKAMGMLVDKSDLGFGVRSWRYSMVVE----NGVVEK  143 (165)
T ss_pred             CcHHHHHHHHHhcCCCccEEEecCCC----chhhhhcCceeecccCCcceeeeeEEEEEe----CCeEEE
Confidence            6543  3333333323 334444433    45555544           34444455666    675543

>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]

Probab=84.91  E-value=6.7  Score=39.00  Aligned_cols=45  Identities=16%  Similarity=0.309  Sum_probs=33.3

Q ss_pred             hHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHH
Q 014225          303 KELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEA  361 (428)
Q Consensus       303 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~  361 (428)
                      ..++..|-+..+|.+|+||..|+.+.+-.+            +..  .++|...|+++.
T Consensus        67 ~qFs~IYp~v~vPs~ffIg~sGtpLevitg------------~v~--adeL~~~i~Kv~  111 (506)
T KOG2507|consen   67 TQFSAIYPYVSVPSIFFIGFSGTPLEVITG------------FVT--ADELASSIEKVW  111 (506)
T ss_pred             hhhhhhcccccccceeeecCCCceeEEeec------------ccc--HHHHHHHHHHHH
Confidence            556777889999999999999999887433            222  466777776653

>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ

Probab=83.62  E-value=5.9  Score=34.16  Aligned_cols=101  Identities=11%  Similarity=0.260  Sum_probs=60.8

Q ss_pred             EEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHH-HhcCCCcEEEEEE-ecCCCh--------HHHHHHHhcCCCce
Q 014225           53 QVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEE-LRNNGSDFEVVFV-SSDEDL--------NAFNNYRACMPWLA  122 (428)
Q Consensus        53 ~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~-~~~~~~~~~ii~v-s~D~~~--------~~~~~~~~~~~~~~  122 (428)
                      +.+...+.||+.+|...|---..=..-.|.+..+.+. |...  +++...| +.|+..        .+.++--++++|..
T Consensus        29 ~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d--~yqtttIiN~dDAi~gt~~fVrss~e~~kk~~p~s~  106 (160)
T PF09695_consen   29 PWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHD--KYQTTTIINLDDAIWGTGGFVRSSAEDSKKEFPWSQ  106 (160)
T ss_pred             ccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCcc--ceeEEEEEecccccccchHHHHHHHHHhhhhCCCcE
Confidence            4555678999998888876433333333555555444 4333  3665555 454321        23333344578876


Q ss_pred             eccCChHHHHHHHhhcCCCCC-ceEEEEcCCCCCCCcccc
Q 014225          123 VPYSDLETKKALNRKFDIEGI-PCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       123 ~~~~d~~~~~~l~~~~~v~~~-P~~~lid~~~~dG~i~~~  161 (428)
                      +-. |.+  ..+.+++++..- -+++++|+   +|++...
T Consensus       107 ~vl-D~~--G~~~~aW~L~~~~SaiiVlDK---~G~V~F~  140 (160)
T PF09695_consen  107 FVL-DSN--GVVRKAWQLQEESSAIIVLDK---QGKVQFV  140 (160)
T ss_pred             EEE-cCC--CceeccccCCCCCceEEEEcC---CccEEEE
Confidence            554 544  577888887643 56889999   9988755

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=83.61  E-value=2.3  Score=43.09  Aligned_cols=35  Identities=17%  Similarity=0.242  Sum_probs=23.3

Q ss_pred             EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCCh
Q 014225           65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL  108 (428)
Q Consensus        65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~  108 (428)
                      ++.|..+|||+|.+....|.+       .|  +..-.|++|.+.
T Consensus         4 V~vys~~~Cp~C~~aK~~L~~-------~g--i~~~~idi~~~~   38 (410)
T PRK12759          4 VRIYTKTNCPFCDLAKSWFGA-------ND--IPFTQISLDDDV   38 (410)
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-------CC--CCeEEEECCCCh
Confidence            678899999999995554443       35  444455666554

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=83.44  E-value=2.3  Score=43.11  Aligned_cols=21  Identities=10%  Similarity=0.086  Sum_probs=16.9

Q ss_pred             EEEEeccCChhHHhhhHHHHH
Q 014225          230 GLYFSARWCIPCEKFMPKLLS  250 (428)
Q Consensus       230 ll~F~a~wC~~C~~~~~~l~~  250 (428)
                      |+.|..+|||+|.+....|.+
T Consensus         4 V~vys~~~Cp~C~~aK~~L~~   24 (410)
T PRK12759          4 VRIYTKTNCPFCDLAKSWFGA   24 (410)
T ss_pred             EEEEeCCCCHHHHHHHHHHHH
Confidence            567889999999988776664

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=83.34  E-value=1.2  Score=40.47  Aligned_cols=34  Identities=21%  Similarity=0.392  Sum_probs=27.4

Q ss_pred             cCCcEEEEEEeccCChhHHhhhHHH---HHHHHHHHh
Q 014225          224 LVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQ  257 (428)
Q Consensus       224 ~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~  257 (428)
                      ..|++.|+.|+...||+|..+.+.+   ..+.+.+.+
T Consensus        35 ~~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~   71 (207)
T PRK10954         35 VAGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE   71 (207)
T ss_pred             CCCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC
Confidence            3578889999999999999998866   666666653

>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=82.96  E-value=3.8  Score=35.08  Aligned_cols=101  Identities=21%  Similarity=0.311  Sum_probs=61.0

Q ss_pred             eecccc-cCCcEEEEEEec--cCChh-HHhhhHHHHHHHHHHHhhhhhcCCCCCCE-EEEEEEcCCCHHHHHHHHhcCCc
Q 014225          218 KVPVSS-LVGKTVGLYFSA--RWCIP-CEKFMPKLLSIYQKIKQNLVEKGDALEDF-EVVFVSTDRDQTSFESYFGTMPW  292 (428)
Q Consensus       218 ~v~l~~-~~gk~vll~F~a--~wC~~-C~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~iv~is~d~~~~~~~~~~~~~~~  292 (428)
                      ++.+++ ++||.++| |..  ...|. |+...|-+.+-.++++.+         ++ +|+-||+| ++=..+++.+.++-
T Consensus        34 tv~~~~l~~GKKvIi-fGvPgAFtPtCs~~HvPGyi~~a~elksK---------GVd~iicvSVn-DpFv~~aW~k~~g~  102 (171)
T KOG0541|consen   34 TVNVSSLFKGKKVIL-FGVPGAFTPTCSSSHVPGYIEKADELKSK---------GVDEIICVSVN-DPFVMKAWAKSLGA  102 (171)
T ss_pred             eEEhHHhcCCceEEE-EcCCCccCCccccccCchHHHHHHHHHhc---------CCcEEEEEecC-cHHHHHHHHhhcCc
Confidence            577777 46766655 443  34566 667999999999999987         44 46777887 44334444443331


Q ss_pred             -cccccCCcchhHHHHhcCc-----------CccceEEEECCCCcEEecc
Q 014225          293 -LALPFGDPTIKELTKYFDV-----------QGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       293 -~~~~~~~d~~~~~~~~~~v-----------~~~P~~~lid~~G~i~~~~  330 (428)
                       -.+-+..|...++.+.+|+           ++-....++ .||++...+
T Consensus       103 ~~~V~f~aD~~g~ftk~lgleld~~d~~~g~RS~R~a~vv-engkV~~~n  151 (171)
T KOG0541|consen  103 NDHVKFVADPAGEFTKSLGLELDLSDKLLGVRSRRYALVV-ENGKVTVVN  151 (171)
T ss_pred             cceEEEEecCCCceeeeccceeeeccccCccccccEEEEE-eCCeEEEEE
Confidence             1233444444555544443           344445666 889888765

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=82.65  E-value=1.3  Score=40.19  Aligned_cols=40  Identities=23%  Similarity=0.343  Sum_probs=30.8

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhcCCCcEEEEEE
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFV  102 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~v  102 (428)
                      .|++.++.|+.-.||+|..+.+.+   ..+.+.+.+.   +.++.+
T Consensus        36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~---v~~~~~   78 (207)
T PRK10954         36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEG---TKMTKY   78 (207)
T ss_pred             CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCC---CeEEEe
Confidence            578889999999999999998866   6777777543   445543

>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=82.54  E-value=4.5  Score=34.70  Aligned_cols=63  Identities=24%  Similarity=0.480  Sum_probs=40.6

Q ss_pred             EEecccC-CCCEEEEE-EecCCChh-hhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhc
Q 014225           53 QVKVSDL-EGKVTALY-FSANWYPP-CGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRAC  117 (428)
Q Consensus        53 ~v~l~~~-~gk~vlv~-F~a~wC~~-C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~  117 (428)
                      +++++++ +||-++|+ .=+..-|. |+...|-+.+-+++++.+|.+ +|+.|++|+.- .++++.+.
T Consensus        34 tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd-~iicvSVnDpF-v~~aW~k~   99 (171)
T KOG0541|consen   34 TVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVD-EIICVSVNDPF-VMKAWAKS   99 (171)
T ss_pred             eEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCc-EEEEEecCcHH-HHHHHHhh
Confidence            7888876 78665554 21222333 688899999999999998822 56667776543 23444433

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=80.63  E-value=31  Score=33.74  Aligned_cols=89  Identities=13%  Similarity=0.256  Sum_probs=54.5

Q ss_pred             cEEEEEEeccCCh--hHHhhh---HHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcc
Q 014225          227 KTVGLYFSARWCI--PCEKFM---PKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT  301 (428)
Q Consensus       227 k~vll~F~a~wC~--~C~~~~---~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~  301 (428)
                      +.++|+|+.+--.  ..++..   -.+-+|..+.-..        .++.+..|++..+                      
T Consensus        52 d~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~--------~gigfg~VD~~Kd----------------------  101 (383)
T PF01216_consen   52 DVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLED--------KGIGFGMVDSKKD----------------------  101 (383)
T ss_dssp             SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGG--------CTEEEEEEETTTT----------------------
T ss_pred             cEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccc--------cCcceEEeccHHH----------------------
Confidence            5778888876422  222221   2223344443222        3788888887765                      


Q ss_pred             hhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHh
Q 014225          302 IKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAK  362 (428)
Q Consensus       302 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~  362 (428)
                       ..+++++|+...++++++ ++|+++..+|..            +   .+-|...|..++.
T Consensus       102 -~klAKKLgv~E~~SiyVf-kd~~~IEydG~~------------s---aDtLVeFl~dl~e  145 (383)
T PF01216_consen  102 -AKLAKKLGVEEEGSIYVF-KDGEVIEYDGER------------S---ADTLVEFLLDLLE  145 (383)
T ss_dssp             -HHHHHHHT--STTEEEEE-ETTEEEEE-S--------------S---HHHHHHHHHHHHS
T ss_pred             -HHHHHhcCccccCcEEEE-ECCcEEEecCcc------------C---HHHHHHHHHHhcc
Confidence             789999999999999999 999999886532            2   2556777776665

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=80.25  E-value=2.9  Score=37.16  Aligned_cols=70  Identities=11%  Similarity=0.134  Sum_probs=54.6

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      +..-|++.||-+.-..|+-+-..|+.+++.+-+    ..+|-|++...                        .-++.+++
T Consensus        83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e----TrFikvnae~~------------------------PFlv~kL~  134 (211)
T KOG1672|consen   83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE----TRFIKVNAEKA------------------------PFLVTKLN  134 (211)
T ss_pred             cCceEEEEEEcCCCcceehHHHHHHHHHHhccc----ceEEEEecccC------------------------ceeeeeee
Confidence            567899999999999999999999999998755    34666544322                        44667799


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      |..+|++.++.    ||..+.+
T Consensus       135 IkVLP~v~l~k----~g~~~D~  152 (211)
T KOG1672|consen  135 IKVLPTVALFK----NGKTVDY  152 (211)
T ss_pred             eeEeeeEEEEE----cCEEEEE
Confidence            99999999998    6866543

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=80.12  E-value=18  Score=30.95  Aligned_cols=14  Identities=21%  Similarity=0.133  Sum_probs=11.0

Q ss_pred             CChhHHhhhHHHHH
Q 014225          237 WCIPCEKFMPKLLS  250 (428)
Q Consensus       237 wC~~C~~~~~~l~~  250 (428)
                      +||+|.+....|++
T Consensus        15 t~~~C~~ak~iL~~   28 (147)
T cd03031          15 TFEDCNNVRAILES   28 (147)
T ss_pred             cChhHHHHHHHHHH
Confidence            89999887766654

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	428
1okd_A	154	Nmr-Structure Of Tryparedoxin 1 Length = 154		5e-21
1ezk_A	153	Crystal Structure Of Recombinant Tryparedoxin I Len		5e-21
1o73_A	144	Tryparedoxin From Trypanosoma Brucei Length = 144		1e-20
1qk8_A	146	Tryparedoxin-I From Crithidia Fasciculata Length =		4e-20
1ewx_A	146	Crystal Structure Of Native Tryparedoxin I From Cri		4e-20
1o8x_A	146	Mutant Tryparedoxin-I Cys43ala Length = 146		4e-19
3s9f_A	165	The Structure Of Tryparedoxin I From Leishmania Maj		1e-18
1oc9_A	152	Tryparedoxin Ii From C.Fasciculata Solved By Mr Len		1e-18
1o6j_A	150	Tryparedoxin Ii From C.Fasciculata Solved By Sulphu		2e-18
1fg4_A	149	Structure Of Tryparedoxin Ii Length = 149		2e-18
1o81_A	152	Tryparedoxin Ii From C.fasciculata Solved By Sulphu		2e-18
1i5g_A	144	Tryparedoxin Ii Complexed With Glutathionylspermidi		2e-17
2lus_A	143	Nmr Structure Of Carcinoscorpius Rotundicauda Thior		2e-13
2lus_A	143	Nmr Structure Of Carcinoscorpius Rotundicauda Thior		4e-13
1v5n_A	89	Solution Structure Of Dc1 Domain Of Pdi-Like Hypoth		2e-06
1st9_A	143	Crystal Structure Of A Soluble Domain Of Resa In Th		3e-05
2h1b_A	143	Resa E80q Length = 143		3e-05
2h19_A	143	Crystal Structure Of Resa Cys77ala Variant Length =		3e-04
2h1a_A	143	Resa C74a Variant Length = 143		3e-04
3c71_A	143	Struture Of A Resa Variant With A Dsba-Like Active		3e-04
3c73_A	140	Structure Of Cehc Variant Resa Length = 140		3e-04
2ls5_A	159	Solution Structure Of A Putative Protein Disulfide		5e-04

>pdb|1EZK|A Chain A, Crystal Structure Of Recombinant Tryparedoxin I Length = 153

Iteration: 1
 Score = 99.0 bits (245), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 53/139 (38%), Positives = 80/139 (57%), Gaps = 11/139 (7%)
Query: 216 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 275
           D +V V SL GK V  YFSA WC PC  F P+L+  Y K  ++        ++FEVVF +
Sbjct: 17  DGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHES--------KNFEVVFCT 68
Query: 276 TDRDQTSFESYFGTMPWLALPFGDP-TIKELTKYFDVQGIPCLVIIGPE-GKTVTKQGR- 332
            D ++  F  YF  MPWLA+PF     +++L+K+F+V+ IP L+ +  + G  VT + R 
Sbjct: 69  WDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARA 128
Query: 333 NLINLYQENAYPFTEAKLE 351
            L+   +   +P+ +A LE
Sbjct: 129 TLVKDPEGEQFPWKDAPLE 147

>pdb|1O73|A Chain A, Tryparedoxin From Trypanosoma Brucei Length = 144

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/120 (44%), Positives = 68/120 (56%), Gaps = 10/120 (8%)
Query: 218 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 277
           +V + SLVGKTV LYFSA WC PC  F P L   Y        EK    ++FEVV +S D
Sbjct: 20  EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFY--------EKHHVAKNFEVVLISWD 71
Query: 278 RDQTSFESYFGTMPWLALPFGD-PTIKELTKYFDVQGIPCLVIIGPE-GKTVTKQGRNLI 335
            +++ F  Y+G MPWLALPF    T+ EL K F V+ IP L+ I  + G  +  Q R  +
Sbjct: 72  ENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRV 131

>pdb|1QK8|A Chain A, Tryparedoxin-I From Crithidia Fasciculata Length = 146

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 78/136 (57%), Gaps = 11/136 (8%)
Query: 216 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 275
           D +V V SL GK V  YFSA WC PC  F P+L+  Y K  ++        ++FEVVF +
Sbjct: 18  DGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHES--------KNFEVVFCT 69
Query: 276 TDRDQTSFESYFGTMPWLALPFGDP-TIKELTKYFDVQGIPCLVIIGPE-GKTVTKQGR- 332
            D ++  F  YF  MPWLA+PF     +++L+K+F+V+ IP L+ +  + G  VT + R 
Sbjct: 70  WDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARA 129
Query: 333 NLINLYQENAYPFTEA 348
            L+   +   +P+ +A
Sbjct: 130 TLVKDPEGEQFPWKDA 145

>pdb|1EWX|A Chain A, Crystal Structure Of Native Tryparedoxin I From Crithidia Fasciculata Length = 146

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 78/136 (57%), Gaps = 11/136 (8%)
Query: 216 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 275
           D +V V SL GK V  YFSA WC PC  F P+L+  Y K  ++        ++FEVVF +
Sbjct: 18  DGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHES--------KNFEVVFCT 69
Query: 276 TDRDQTSFESYFGTMPWLALPFGDP-TIKELTKYFDVQGIPCLVIIGPE-GKTVTKQGR- 332
            D ++  F  YF  MPWLA+PF     +++L+K+F+V+ IP L+ +  + G  VT + R 
Sbjct: 70  WDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARA 129
Query: 333 NLINLYQENAYPFTEA 348
            L+   +   +P+ +A
Sbjct: 130 TLVKDPEGEQFPWKDA 145

>pdb|1O8X|A Chain A, Mutant Tryparedoxin-I Cys43ala Length = 146

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 77/136 (56%), Gaps = 11/136 (8%)
Query: 216 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 275
           D +V V SL GK V  YFSA WC P   F P+L+  Y K  ++        ++FEVVF +
Sbjct: 18  DGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHES--------KNFEVVFCT 69
Query: 276 TDRDQTSFESYFGTMPWLALPFGDP-TIKELTKYFDVQGIPCLVIIGPE-GKTVTKQGR- 332
            D ++  F  YF  MPWLA+PF     +++L+K+F+V+ IP L+ +  + G  VT + R 
Sbjct: 70  WDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARA 129
Query: 333 NLINLYQENAYPFTEA 348
            L+   +   +P+ +A
Sbjct: 130 TLVKDPEGEQFPWKDA 145

>pdb|3S9F|A Chain A, The Structure Of Tryparedoxin I From Leishmania Major Length = 165

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 69/118 (58%), Gaps = 10/118 (8%)
Query: 221 VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ 280
           + SL GKTV  YFSA WC PC  F P+L+  Y+K   +        ++FE++  S D ++
Sbjct: 43  MDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDS--------KNFEIILASWDEEE 94
Query: 281 TSFESYFGTMPWLALPFGDPTIKE-LTKYFDVQGIPCLVIIGPE-GKTVTKQGRNLIN 336
             F +Y+  MPWL++PF +  I E LTK + V+ IP L+ +  + G TVT + R+ + 
Sbjct: 95  DDFNAYYAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGLNADTGDTVTTRARHALT 152

>pdb|1OC9|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr Length = 152

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 66/119 (55%), Gaps = 10/119 (8%)
Query: 219 VPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 278
           + + SL GKTV  YFSA WC PC  F P+L+  Y+   ++        ++FEV+ +S D 
Sbjct: 24  IALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAES--------KNFEVMLISWDE 75
Query: 279 DQTSFESYFGTMPWLALPFGDPTIKE-LTKYFDVQGIPCLV-IIGPEGKTVTKQGRNLI 335
               F+ Y+  MPWLALPF D    E LT  FDV+ IP LV +    G  +T Q R ++
Sbjct: 76  SAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMV 134

>pdb|1O6J|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur Phasing Length = 150

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 69/133 (51%), Gaps = 12/133 (9%)
Query: 205 HDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGD 264
           +    L G   D  +P  SL GKTV  YFSA WC PC  F P+L+  Y+   +       
Sbjct: 10  YSTNVLKGAAADIALP--SLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEK------ 61
Query: 265 ALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE-LTKYFDVQGIPCLV-IIGP 322
             ++FEV+ +S D     F+ Y+  MPWLALPF D    E LT  FDV+ IP LV +   
Sbjct: 62  --KNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEAD 119
Query: 323 EGKTVTKQGRNLI 335
            G  +T Q R ++
Sbjct: 120 SGNIITTQARTMV 132

>pdb|1FG4|A Chain A, Structure Of Tryparedoxin Ii Length = 149

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 65/119 (54%), Gaps = 10/119 (8%)
Query: 219 VPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 278
           + + SL GKTV  YFSA WC PC  F P+L+  Y+   +         ++FEV+ +S D 
Sbjct: 21  IALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEK--------KNFEVMLISWDE 72
Query: 279 DQTSFESYFGTMPWLALPFGDPTIKE-LTKYFDVQGIPCLV-IIGPEGKTVTKQGRNLI 335
               F+ Y+  MPWLALPF D    E LT  FDV+ IP LV +    G  +T Q R ++
Sbjct: 73  SAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMV 131

>pdb|1O81|A Chain A, Tryparedoxin Ii From C.fasciculata Solved By Sulphur Phasing Length = 152

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 65/119 (54%), Gaps = 10/119 (8%)
Query: 219 VPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 278
           + + SL GKTV  YFSA WC PC  F P+L+  Y+   +         ++FEV+ +S D 
Sbjct: 24  IALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEK--------KNFEVMLISWDE 75
Query: 279 DQTSFESYFGTMPWLALPFGDPTIKE-LTKYFDVQGIPCLV-IIGPEGKTVTKQGRNLI 335
               F+ Y+  MPWLALPF D    E LT  FDV+ IP LV +    G  +T Q R ++
Sbjct: 76  SAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMV 134

>pdb|1I5G|A Chain A, Tryparedoxin Ii Complexed With Glutathionylspermidine Length = 144

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/119 (39%), Positives = 64/119 (53%), Gaps = 10/119 (8%)
Query: 219 VPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 278
           + + SL GKTV  YFSA WC P   F P+L+  Y+   +         ++FEV+ +S D 
Sbjct: 21  IALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK--------KNFEVMLISWDE 72
Query: 279 DQTSFESYFGTMPWLALPFGDPTIKE-LTKYFDVQGIPCLV-IIGPEGKTVTKQGRNLI 335
               F+ Y+  MPWLALPF D    E LT  FDV+ IP LV +    G  +T Q R ++
Sbjct: 73  SAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMV 131

>pdb|2LUS|A Chain A, Nmr Structure Of Carcinoscorpius Rotundicauda Thioredoxin Related Protein 16 And Its Role In Regulating Transcription Factor Nf-Kb Activity Length = 143

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 62/117 (52%), Gaps = 10/117 (8%)
Query: 63  VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNY--RACMPW 120
           +   YFSA+W PPC  FT +L D+Y EL ++ + FE++FVSSD   +    Y   +   W
Sbjct: 28  IIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDW 87
Query: 121 LAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATL--HDGVELIYKYGIRAF 175
           LA+PY        +  K+ I GIP LV++     K D TL   +G   +   G RAF
Sbjct: 88  LAIPYRSGPASN-VTAKYGITGIPALVIV-----KKDGTLISMNGRGEVQSLGPRAF 138

>pdb|2LUS|A Chain A, Nmr Structure Of Carcinoscorpius Rotundicauda Thioredoxin Related Protein 16 And Its Role In Regulating Transcription Factor Nf-Kb Activity Length = 143

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 9/117 (7%)
Query: 229 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYF- 287
           +G YFSA WC PC  F P L  +Y ++        D    FE++FVS+DR +     Y  
Sbjct: 29  IGFYFSAHWCPPCRGFTPILADMYSELV-------DDSAPFEIIFVSSDRSEDDMFQYMM 81
Query: 288 -GTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAY 343
                WLA+P+       +T  + + GIP LVI+  +G  ++  GR  +      A+
Sbjct: 82  ESHGDWLAIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMNGRGEVQSLGPRAF 138

>pdb|1V5N|A Chain A, Solution Structure Of Dc1 Domain Of Pdi-Like Hypothetical Protein From Arabidopsis Thaliana Length = 89

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 346 TEAKLEFLEKQMEEEAKNLPRSEFHIGHR-HELNLVSEGTGGGPFICCDCDEQGSGWAYQ 404
           TE +L+ +E + +E AK+ P+   H+ H  HEL L    T    + C  C+E+G+ W+Y 
Sbjct: 8   TEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELEL----TRVQVYTCDKCEEEGTIWSYH 63
Query: 405 CLECGYEVHPKCV 417
           C EC +++H KC 
Sbjct: 64  CDECDFDLHAKCA 76

>pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The Oxidised Form Length = 143

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 209 YLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALED 268
           ++L     +++ +S L GK V L F   WC PC+K  P + + Y+  K   V        
Sbjct: 9   FVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGV-------- 60
Query: 269 FEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 327
            E+V V+    + +  ++  +   +  P    T +++   +DV  +P   +I PEGK V
Sbjct: 61  -EIVAVNVGESKIAVHNFMKSYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVV 117

>pdb|2H1B|A Chain A, Resa E80q Length = 143

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 10/111 (9%)
Query: 217 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 276
           +++ +S L GK V L F   WC PC+K  P + + Y+  K   V         E+V V+ 
Sbjct: 17  KRIELSDLKGKGVFLNFWGTWCEPCKKQFPYMANQYKHFKSQGV---------EIVAVNV 67
Query: 277 DRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 327
              + +  ++  +   +  P    T +++   +DV  +P   +I PEGK V
Sbjct: 68  GESKIAVHNFMKSYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVV 117

>pdb|2H19|A Chain A, Crystal Structure Of Resa Cys77ala Variant Length = 143

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 10/111 (9%)
Query: 217 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 276
           +++ +S L GK V L F   WC P +K  P + + Y+  K   VE         +V V+ 
Sbjct: 17  KRIELSDLKGKGVFLNFWGTWCEPAKKEFPYMANQYKHFKSQGVE---------IVAVNV 67
Query: 277 DRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 327
              + +  ++  +   +  P    T +++   +DV  +P   +I PEGK V
Sbjct: 68  GESKIAVHNFMKSYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVV 117

>pdb|2H1A|A Chain A, Resa C74a Variant Length = 143

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 10/111 (9%)
Query: 217 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 276
           +++ +S L GK V L F   W  PC+K  P + + Y+  K   VE         +V V+ 
Sbjct: 17  KRIELSDLKGKGVFLNFWGTWAEPCKKEFPYMANQYKHFKSQGVE---------IVAVNV 67
Query: 277 DRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 327
              + +  ++  +   +  P    T +++   +DV  +P   +I PEGK V
Sbjct: 68  GESKIAVHNFMKSYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVV 117

>pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site Motif (Cphc) Length = 143

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 10/111 (9%)
Query: 217 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 276
           +++ +S L GK V L F   WC  C+K  P + + Y+  K   V         E+V V+ 
Sbjct: 17  KRIELSDLKGKGVFLNFWGTWCPHCKKEFPYMANQYKHFKSQGV---------EIVAVNV 67
Query: 277 DRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 327
              + +  ++  +   +  P    T +++   +DV  +P   +I PEGK V
Sbjct: 68  GESKIAVHNFMKSYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVV 117

>pdb|3C73|A Chain A, Structure Of Cehc Variant Resa Length = 140

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 10/119 (8%)
Query: 209 YLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALED 268
           ++L     +++ +S L GK V L F   WC  C+K  P + + Y+  K   V        
Sbjct: 6   FVLEDTNGKRIELSDLKGKGVFLNFWGTWCEHCKKEFPYMANQYKHFKSQGV-------- 57
Query: 269 FEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 327
            E+V V+    + +  ++  +   +  P    T +++   +DV  +P   +I PEGK V
Sbjct: 58  -EIVAVNVGESKIAVHNFMKSYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVV 114

>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide Isomerase From Bacteroides Thetaiotaomicron Length = 159

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 56/131 (42%), Gaps = 19/131 (14%)
Query: 217 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKL-LSIYQKIKQNLVEKGDALEDFEVVFVS 275
           ++V +SSL GK V L F+A WC  C K MP +   I+ K K N         DF    + 
Sbjct: 24  KQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDN--------ADF--ALIG 73
Query: 276 TDRDQTSFESY-FGTMPWLALPFG-DPTIKELTKY-FDVQGIPCLVIIGPEGKTVTKQGR 332
            DRD+   +   F     +  P G DP      KY     GI   V+I  EGK V     
Sbjct: 74  IDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALRDAGITRNVLIDREGKIV----- 128
Query: 333 NLINLYQENAY 343
            L  LY E  +
Sbjct: 129 KLTRLYNEEEF 139

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	428
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	2e-40
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	6e-36
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	3e-40
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	9e-34
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	3e-40
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	1e-35
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	4e-39
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	6e-38
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	8e-39
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	2e-30
1v5n_A	89	PDI-like hypothetical protein AT1G60420; DC1 domai	5e-23
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	2e-17
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	5e-16
2lrt_A	152	Uncharacterized protein; structural genomics, thio	2e-17
2lrt_A	152	Uncharacterized protein; structural genomics, thio	1e-13
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	5e-17
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	2e-12
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	1e-16
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	2e-13
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	2e-16
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	3e-12
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	3e-16
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	8e-14
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	2e-15
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	2e-08
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	1e-14
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	2e-09
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	2e-14
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	2e-08
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	3e-14
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	2e-10
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	6e-14
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	1e-09
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	8e-13
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	2e-08
4evm_A	138	Thioredoxin family protein; structural genomics, n	8e-13
4evm_A	138	Thioredoxin family protein; structural genomics, n	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-12
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	2e-12
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	1e-06
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	3e-12
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	3e-09
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	5e-12
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	5e-07
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	6e-12
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	7e-08
3raz_A	151	Thioredoxin-related protein; structural genomics,	1e-11
3raz_A	151	Thioredoxin-related protein; structural genomics,	2e-07
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	1e-11
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	3e-07
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	2e-11
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	3e-08
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	4e-11
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	2e-06
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	6e-11
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	3e-09
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	2e-10
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	1e-07
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	4e-10
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	6e-05
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	8e-10
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	2e-06
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	9e-10
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	4e-05
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	3e-09
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	3e-06
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	3e-09
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	1e-04
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	7e-09
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	9e-05
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	1e-07
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	3e-07
3me7_A	170	Putative uncharacterized protein; electron transfe	2e-06
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	3e-05
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	3e-05
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	7e-05
2l57_A	126	Uncharacterized protein; structural genomics, unkn	8e-05
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	1e-04
2kuc_A	130	Putative disulphide-isomerase; structural genomics	2e-04
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	4e-04
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	6e-04
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	7e-04
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	8e-04

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Length = 146

 Score =  140 bits (354), Expect = 2e-40
 Identities = 50/136 (36%), Positives = 77/136 (56%), Gaps = 11/136 (8%)

Query: 216 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 275
           D +V V SL GK V  YFSA WC P   F P+L+  Y K  ++        ++FEVVF +
Sbjct: 18  DGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHES--------KNFEVVFCT 69

Query: 276 TDRDQTSFESYFGTMPWLALPFGD-PTIKELTKYFDVQGIPCLVIIGPE-GKTVTKQGRN 333
            D ++  F  YF  MPWLA+PF     +++L+K+F+V+ IP L+ +  + G  VT + R 
Sbjct: 70  WDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARA 129

Query: 334 -LINLYQENAYPFTEA 348
            L+   +   +P+ +A
Sbjct: 130 TLVKDPEGEQFPWKDA 145

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Length = 146

 Score =  128 bits (323), Expect = 6e-36
 Identities = 47/137 (34%), Positives = 72/137 (52%), Gaps = 8/137 (5%)

Query: 46  LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 105
            L +   +V+V  L GK+   YFSA+W PP   FT  L++ Y++   +  +FEVVF + D
Sbjct: 13  KLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESK-NFEVVFCTWD 71

Query: 106 EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDD---ATLHD 162
           E+ + F  Y A MPWLAVP++  E  + L++ F++E IP L+ +    D D     T   
Sbjct: 72  EEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGV----DADSGDVVTTRA 127

Query: 163 GVELIYKYGIRAFPFTK 179
              L+       FP+  
Sbjct: 128 RATLVKDPEGEQFPWKD 144

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 Length = 144

 Score =  139 bits (353), Expect = 3e-40
 Identities = 54/134 (40%), Positives = 72/134 (53%), Gaps = 11/134 (8%)

Query: 217 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 276
            +V + SLVGKTV LYFSA WC PC  F P L   Y+K            ++FEVV +S 
Sbjct: 19  GEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVA--------KNFEVVLISW 70

Query: 277 DRDQTSFESYFGTMPWLALPFG-DPTIKELTKYFDVQGIPCLVIIGPE-GKTVTKQGRN- 333
           D +++ F  Y+G MPWLALPF    T+ EL K F V+ IP L+ I  + G  +  Q R  
Sbjct: 71  DENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTR 130

Query: 334 LINLYQENAYPFTE 347
           +I       +P+  
Sbjct: 131 VIEDPDGANFPWPN 144

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 Length = 144

 Score =  122 bits (308), Expect = 9e-34
 Identities = 46/136 (33%), Positives = 66/136 (48%), Gaps = 8/136 (5%)

Query: 46  LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 105
            L     +V +  L GK   LYFSA+W PPC  FT VL + YE+      +FEVV +S D
Sbjct: 13  NLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAK-NFEVVLISWD 71

Query: 106 EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDD---ATLHD 162
           E+ + F++Y   MPWLA+P+    T   L + F +E IP L+ +    + D         
Sbjct: 72  ENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITI----NADTGAIIGTQA 127

Query: 163 GVELIYKYGIRAFPFT 178
              +I       FP+ 
Sbjct: 128 RTRVIEDPDGANFPWP 143

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Length = 144

 Score =  139 bits (352), Expect = 3e-40
 Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 11/134 (8%)

Query: 217 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 276
             + + SL GKTV  YFSA WC P   F P+L+  Y+   +         ++FEV+ +S 
Sbjct: 19  ADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK--------KNFEVMLISW 70

Query: 277 DRDQTSFESYFGTMPWLALPFGDPTIK-ELTKYFDVQGIPCLVIIGPE-GKTVTKQGRNL 334
           D     F+ Y+  MPWLALPF D      LT  FDV+ IP LV +  + G  +T Q R +
Sbjct: 71  DESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 130

Query: 335 I-NLYQENAYPFTE 347
           +    +   +P+  
Sbjct: 131 VVKDPEAKDFPWPN 144

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Length = 144

 Score =  127 bits (321), Expect = 1e-35
 Identities = 43/139 (30%), Positives = 65/139 (46%), Gaps = 8/139 (5%)

Query: 43  RDYLLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFV 102
              +L      + +  L GK    YFSA+W PP   FT  L+D Y+       +FEV+ +
Sbjct: 10  STNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKK-NFEVMLI 68

Query: 103 SSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDD---AT 159
           S DE    F +Y A MPWLA+P+ D +  + L   FD++ IP LV +    + D     T
Sbjct: 69  SWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGV----EADSGNIIT 124

Query: 160 LHDGVELIYKYGIRAFPFT 178
                 ++     + FP+ 
Sbjct: 125 TQARTMVVKDPEAKDFPWP 143

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} Length = 165

 Score =  137 bits (346), Expect = 4e-39
 Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 11/134 (8%)

Query: 217 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 276
           +   + SL GKTV  YFSA WC PC  F P+L+  Y+K   +        ++FE++  S 
Sbjct: 39  DTADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDS--------KNFEIILASW 90

Query: 277 DRDQTSFESYFGTMPWLALPFGDPTIK-ELTKYFDVQGIPCLVIIGPE-GKTVTKQGRNL 334
           D ++  F +Y+  MPWL++PF +  I   LTK + V+ IP L+ +  + G TVT + R+ 
Sbjct: 91  DEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGLNADTGDTVTTRARHA 150

Query: 335 I-NLYQENAYPFTE 347
           +        +P+ +
Sbjct: 151 LTQDPMGEQFPWRD 164

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} Length = 165

 Score =  134 bits (338), Expect = 6e-38
 Identities = 53/169 (31%), Positives = 78/169 (46%), Gaps = 12/169 (7%)

Query: 19  GSSISEHQKIS----TSSRFSSLLASKDRDYLLNQHGTQVKVSDLEGKVTALYFSANWYP 74
           GSS   H   S      S  S +         L +      +  L GK    YFSA+W P
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMSGVAKHLGEALKLRKQADTADMDSLSGKTVFFYFSASWCP 61

Query: 75  PCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKAL 134
           PC  FT  LV+ YE+  ++  +FE++  S DE+ + FN Y A MPWL++P+++    +AL
Sbjct: 62  PCRGFTPQLVEFYEKHHDSK-NFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEAL 120

Query: 135 NRKFDIEGIPCLVVLQPYDDKDD---ATLHDGVELIYKYGIRAFPFTKE 180
            +K+ +E IP L+ L    + D     T      L        FP+  E
Sbjct: 121 TKKYSVESIPTLIGL----NADTGDTVTTRARHALTQDPMGEQFPWRDE 165

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} Length = 143

 Score =  136 bits (343), Expect = 8e-39
 Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 11/131 (8%)

Query: 217 EKVPVSSLV--GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 274
            +V  +  +     +G YFSA WC PC  F P L  +Y ++        D    FE++FV
Sbjct: 15  CEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELV-------DDSAPFEIIFV 67

Query: 275 STDRDQTSFESYFG--TMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 332
           S+DR +     Y       WLA+P+       +T  + + GIP LVI+  +G  ++  GR
Sbjct: 68  SSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMNGR 127

Query: 333 NLINLYQENAY 343
             +      A+
Sbjct: 128 GEVQSLGPRAF 138

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} Length = 143

 Score =  113 bits (285), Expect = 2e-30
 Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 10/135 (7%)

Query: 46  LLNQHGTQVKVSDL--EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS 103
           L+ ++  +V  ++   +  +   YFSA+W PPC  FT +L D+Y EL ++ + FE++FVS
Sbjct: 9   LVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVS 68

Query: 104 SDEDLNAFNNYRAC--MPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 161
           SD   +    Y       WLA+PY        +  K+ I GIP LV++     KD   + 
Sbjct: 69  SDRSEDDMFQYMMESHGDWLAIPYRS-GPASNVTAKYGITGIPALVIV----KKDGTLIS 123

Query: 162 -DGVELIYKYGIRAF 175
            +G   +   G RAF
Sbjct: 124 MNGRGEVQSLGPRAF 138

>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3 Length = 89

 Score = 91.5 bits (227), Expect = 5e-23
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 341 NAYPFTEAKLEFLEKQMEEEAKNLPRSEFHIGHR-HELNLVSEGTGGGPFICCDCDEQGS 399
           +    TE +L+ +E + +E AK+ P+   H+ H  HEL L         + C  C+E+G+
Sbjct: 3   SGSSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTR----VQVYTCDKCEEEGT 58

Query: 400 GWAYQCLECGYEVHPKCVRAVDRGS 424
            W+Y C EC +++H KC    D   
Sbjct: 59  IWSYHCDECDFDLHAKCALNEDTKE 83

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142

 Score = 77.8 bits (192), Expect = 2e-17
 Identities = 15/120 (12%), Positives = 40/120 (33%), Gaps = 13/120 (10%)

Query: 217 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVF 273
           +   +S L  +   L+F    C  C KF        +  + ++              V+ 
Sbjct: 18  DNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENG---------TLRVLA 68

Query: 274 VSTDRDQTSFESYFGTMPWLALPFGDPTIK-ELTKYFDVQGIPCLVIIGPEGKTVTKQGR 332
           +  D ++  + +    MP   +   +        + +D++  P + ++    + + K   
Sbjct: 69  IYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLYDIRATPTIYLLDGRKRVILKDTS 128

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142

 Score = 73.5 bits (181), Expect = 5e-16
 Identities = 24/150 (16%), Positives = 48/150 (32%), Gaps = 22/150 (14%)

Query: 46  LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVD---VYEELRNNGSDFEVVFV 102
            +  HG   ++S L+ + T L+F       C  F  +  +     E + N      V+ +
Sbjct: 12  YVTVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGT--LRVLAI 69

Query: 103 SSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 162
             DE+   +      MP   +   +        + +DI   P + +L    D        
Sbjct: 70  YPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLYDIRATPTIYLL----DG------R 119

Query: 163 GVELIYKYGIRAFPFTKEKLEELQKEEKEK 192
                    +     + E+L +    +  K
Sbjct: 120 KR-------VILKDTSMEQLIDYLATQAGK 142

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Length = 152

 Score = 77.8 bits (192), Expect = 2e-17
 Identities = 17/113 (15%), Positives = 40/113 (35%), Gaps = 9/113 (7%)

Query: 217 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 276
               ++ L GK V + F+             L  +Y K              FE+  +S 
Sbjct: 26  NTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQ---------GFEIYQISL 76

Query: 277 DRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 329
           D D+  +++    +PW+ +   +         ++V  +P + ++    +   +
Sbjct: 77  DGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTNLPSVFLVNRNNELSAR 129

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Length = 152

 Score = 67.4 bits (165), Expect = 1e-13
 Identities = 25/150 (16%), Positives = 57/150 (38%), Gaps = 18/150 (12%)

Query: 46  LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 105
           L +  G    ++DL+GKV  + F+             L ++Y +  + G  FE+  +S D
Sbjct: 20  LKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQG--FEIYQISLD 77

Query: 106 EDLNAFNNYRACMPWLAVPYSDLE-TKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGV 164
            D + +      +PW+ V   D      +    +++  +P + ++    ++      +  
Sbjct: 78  GDEHFWKTSADNLPWVCV--RDANGAYSSYISLYNVTNLPSVFLV----NR------NNE 125

Query: 165 ELIYKYGIRAFPFTKEKLEELQKEEKEKHE 194
             +   G        E +++L +     H 
Sbjct: 126 --LSARGEN-IKDLDEAIKKLLEGHHHHHH 152

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152

 Score = 77.0 bits (190), Expect = 5e-17
 Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 11/118 (9%)

Query: 217 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 276
             V ++   GK V + F    C  C K  P LL  Y   K            F +  VST
Sbjct: 20  NSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDK---------GFTIYGVST 70

Query: 277 DRDQTSFESYFG--TMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 332
           DR +  ++         W  +      +K++ + + + G P ++++ PEGK V K+ R
Sbjct: 71  DRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKELR 128

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 29/153 (18%), Positives = 52/153 (33%), Gaps = 18/153 (11%)

Query: 46  LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 105
            ++  G  V ++D +GK   + F       C   T  L+  Y   ++ G  F +  VS+D
Sbjct: 14  GIDLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKG--FTIYGVSTD 71

Query: 106 EDLNAFNNY--RACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 163
                +          W  V     +  K +   + I G P ++++    D       +G
Sbjct: 72  RREEDWKKAIEEDKSYWNQVL-LQKDDVKDVLESYCIVGFPHIILV----DP------EG 120

Query: 164 VELIYKYGIRAFPFTKEKLEELQKEEKEKHERQ 196
              I    +R        +E+     KE H   
Sbjct: 121 K--IVAKELRG-DDLYNTVEKFVNGAKEGHHHH 150

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Length = 142

 Score = 75.5 bits (186), Expect = 1e-16
 Identities = 18/115 (15%), Positives = 38/115 (33%), Gaps = 9/115 (7%)

Query: 217 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 276
            K  +     +   L+ +   C  C + +  L +    I      K       +V+ +  
Sbjct: 22  VKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASP-VINGFTAAKK-----LKVLSIYP 75

Query: 277 DRDQTSFESYFGTMP--WLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 329
           D +   ++ +       W      +  IK    Y D++ IP L ++      + K
Sbjct: 76  DEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLY-DLRAIPTLYLLDKNKTVLLK 129

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Length = 142

 Score = 66.6 bits (163), Expect = 2e-13
 Identities = 23/146 (15%), Positives = 44/146 (30%), Gaps = 22/146 (15%)

Query: 46  LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVD---VYEELRNNGSDFEVVFV 102
                G +  +     + T L+ +      C      L     +           +V+ +
Sbjct: 16  YTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKK--LKVLSI 73

Query: 103 SSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 162
             DE+L+ +  +R           D E        +D+  IP L +L    DK      +
Sbjct: 74  YPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLYDLRAIPTLYLL----DK------N 123

Query: 163 GVELIYKYGIRAFPFTKEKLEELQKE 188
                    +     T +K+E+   E
Sbjct: 124 KT-------VLLKDATLQKVEQYLAE 142

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Length = 152

 Score = 75.0 bits (185), Expect = 2e-16
 Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 23/148 (15%)

Query: 217 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 276
           + V ++ L GK + +   A WC PC   +P L  + +K             D   V +S 
Sbjct: 21  KTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGK---------DIHFVSLSC 71

Query: 277 DRDQTSFESYFGT--MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNL 334
           D+++ ++E+      +  + L  G    +     + + GIP  +++  +GK ++      
Sbjct: 72  DKNKKAWENMVTKDQLKGIQLHMGTD--RTFMDAYLINGIPRFILLDRDGKIISANMT-- 127

Query: 335 INLYQENAYPFTEAKLEFLEKQMEEEAK 362
                    P      E   + +  E  
Sbjct: 128 --------RPSDPKTAEKFNELLGLEGH 147

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Length = 152

 Score = 63.1 bits (154), Expect = 3e-12
 Identities = 34/151 (22%), Positives = 58/151 (38%), Gaps = 18/151 (11%)

Query: 46  LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 105
             + +G  V ++DL+GK   +   A W  PC      L ++ E+          V +S D
Sbjct: 15  YPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKD--IHFVSLSCD 72

Query: 106 EDLNAFNNYRA--CMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 163
           ++  A+ N      +  + +    + T +     + I GIP  ++L    D+      DG
Sbjct: 73  KNKKAWENMVTKDQLKGIQLH---MGTDRTFMDAYLINGIPRFILL----DR------DG 119

Query: 164 VELIYKYGIRAFPFTKEKLEE-LQKEEKEKH 193
             +       + P T EK  E L  E    H
Sbjct: 120 KIISANMTRPSDPKTAEKFNELLGLEGHHHH 150

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148

 Score = 74.7 bits (184), Expect = 3e-16
 Identities = 21/147 (14%), Positives = 46/147 (31%), Gaps = 23/147 (15%)

Query: 217 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 276
               +  +  K   L+F    C  C++  PKL   + K +          +  +V   + 
Sbjct: 22  TYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRA---------KGIQVYAANI 72

Query: 277 DRDQTSFESY---FGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRN 333
           +R    +  +        WL +        +    +D+   P L ++      + K+   
Sbjct: 73  ERKDEEWLKFIRSKKIGGWLNV-RDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKRIG- 130

Query: 334 LINLYQENAYPFTEAKLEFLEKQMEEE 360
                    Y   +  L   EK ++ +
Sbjct: 131 ---------YENLDDFLVQYEKSLKTK 148

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148

 Score = 67.4 bits (165), Expect = 8e-14
 Identities = 33/150 (22%), Positives = 54/150 (36%), Gaps = 20/150 (13%)

Query: 46  LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 105
           + +  GT   + D++ K T L+F  +    C   T  L D + + R  G   +V   + +
Sbjct: 16  MTDTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKG--IQVYAANIE 73

Query: 106 EDLNAFNNY---RACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD 162
                +  +   +    WL V   D +        +DI   P L VL    DK      +
Sbjct: 74  RKDEEWLKFIRSKKIGGWLNV--RDSKNHTDFKITYDIYATPVLYVL----DK------N 121

Query: 163 GVELIYKYGIRAFPFTKEKLEELQKEEKEK 192
            V  I    I       + L + +K  K K
Sbjct: 122 KV--IIAKRIGYENL-DDFLVQYEKSLKTK 148

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} Length = 148

 Score = 72.0 bits (177), Expect = 2e-15
 Identities = 25/134 (18%), Positives = 55/134 (41%), Gaps = 21/134 (15%)

Query: 226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFES 285
            + + L F A WC P  +   +L  + ++ K+N        ++F ++ +S D D+ ++E+
Sbjct: 33  NRYLLLNFWASWCDPQPEANAELKRLNKEYKKN--------KNFAMLGISLDIDREAWET 84

Query: 286 YFGT--MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAY 343
                 + W  +        E  K + +  +P  +++ P GK + +  +           
Sbjct: 85  AIKKDTLSWDQVCDFTGLSSETAKQYAILTLPTNILLSPTGKILARDIQ----------G 134

Query: 344 PFTEAKL-EFLEKQ 356
                KL E L+ +
Sbjct: 135 EALTGKLKELLKTE 148

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} Length = 148

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 21/149 (14%)

Query: 46  LLNQHGTQVKVS--DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS 103
           L N+ G ++  S      +   L F A+W  P       L  + +E + N  +F ++ +S
Sbjct: 16  LPNEKGEKLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKN-KNFAMLGIS 74

Query: 104 SDEDLNAFNNY--RACMPWLAVPYSDLE-TKKALNRKFDIEGIPCLVVLQPYDDKDDATL 160
            D D  A+     +  + W  V   D         +++ I  +P  ++L           
Sbjct: 75  LDIDREAWETAIKKDTLSWDQV--CDFTGLSSETAKQYAILTLPTNILL----SP----- 123

Query: 161 HDGVELIYKYGIRAFPFTKEKLEELQKEE 189
             G   I    I+       KL+EL K E
Sbjct: 124 -TGK--ILARDIQG-EALTGKLKELLKTE 148

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} Length = 152

 Score = 70.0 bits (172), Expect = 1e-14
 Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 14/117 (11%)

Query: 215 PDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 274
               V +S   G  V L F A WC PC +  P +  +  K K          + F+VV V
Sbjct: 17  KTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKA---------KGFQVVAV 67

Query: 275 STDRDQTSFESYFGT--MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 329
           + D        +       +      DP   +  + + V+G+P   +I   GK + +
Sbjct: 68  NLDAKTGDAMKFLAQVPAEFTVAF--DPK-GQTPRLYGVKGMPTSFLIDRNGKVLLQ 121

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} Length = 152

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 30/155 (19%), Positives = 57/155 (36%), Gaps = 21/155 (13%)

Query: 46  LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 105
           L  + G  VK+SD  G V  L F A+W  PC      +  +  + +  G  F+VV V+ D
Sbjct: 14  LPGKTGV-VKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKG--FQVVAVNLD 70

Query: 106 EDLNAFNNY--RACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 163
                   +  +    +        + K    R + ++G+P   ++    D+      +G
Sbjct: 71  AKTGDAMKFLAQVPAEFTVA----FDPKGQTPRLYGVKGMPTSFLI----DR------NG 116

Query: 164 VELIYKYGIRA--FPFTKEKLEELQKEEKEKHERQ 196
             L+   G R       ++++       +  H   
Sbjct: 117 KVLLQHVGFRPADKEALEQQILAALGGNEGHHHHH 151

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} Length = 143

 Score = 69.0 bits (169), Expect = 2e-14
 Identities = 19/118 (16%), Positives = 35/118 (29%), Gaps = 12/118 (10%)

Query: 215 PDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 274
            D K    + +G+   L F A +         +L +   K   +            +  +
Sbjct: 21  NDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPD---------KIAMCSI 71

Query: 275 STDRDQTSFESY---FGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 329
           S D  ++ F                 G     EL K +D++      +I  EG  +  
Sbjct: 72  SMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYDLRKGFKNFLINDEGVIIAA 129

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} Length = 143

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 24/147 (16%), Positives = 46/147 (31%), Gaps = 21/147 (14%)

Query: 44  DYLLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS 103
                 +  +    +  G+ T L F A +          L +   +   +     +  +S
Sbjct: 15  RIEFLGNDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDK--IAMCSIS 72

Query: 104 SDEDLNAFNNY--RACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 161
            DE  + F        +      +  L  +  L +K+D+       ++    +       
Sbjct: 73  MDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYDLRKGFKNFLI----ND------ 122

Query: 162 DGVELIYKYGIRAFPFTKEKLEELQKE 188
           +GV       I A   T EKL E+ K 
Sbjct: 123 EGV-------IIAANVTPEKLTEILKA 142

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151

 Score = 69.2 bits (170), Expect = 3e-14
 Identities = 34/158 (21%), Positives = 63/158 (39%), Gaps = 28/158 (17%)

Query: 217 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 276
           +++ +S L GK V L F   WC PC+K  P + + Y+  K          +  E+V V+ 
Sbjct: 17  KRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKS---------QGVEIVAVNV 67

Query: 277 DRDQTSFESYFGT--MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ-GRN 333
              + +  ++  +  + +  +   D   +++   +DV  +P   +I PEGK V    G  
Sbjct: 68  GESKIAVHNFMKSYGVNFPVVL--DTD-RQVLDAYDVSPLPTTFLINPEGKVVKVVTG-- 122

Query: 334 LINLYQENAYPFTEAKLE-FLEKQMEEEAKNLPRSEFH 370
                       TE+ +  ++      E   L     H
Sbjct: 123 ----------TMTESMIHDYMNLIKPGETSGLEHHHHH 150

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151

 Score = 58.0 bits (141), Expect = 2e-10
 Identities = 29/154 (18%), Positives = 62/154 (40%), Gaps = 18/154 (11%)

Query: 46  LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 105
           L + +G ++++SDL+GK   L F   W  PC      + + Y+  ++ G   E+V V+  
Sbjct: 11  LEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG--VEIVAVNVG 68

Query: 106 EDLNAFNNY--RACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 163
           E   A +N+     + +  V    L+T + +   +D+  +P   ++    +       +G
Sbjct: 69  ESKIAVHNFMKSYGVNFPVV----LDTDRQVLDAYDVSPLPTTFLI----NP------EG 114

Query: 164 VELIYKYGIRAFPFTKEKLEELQKEEKEKHERQT 197
             +    G        + +  ++  E    E   
Sbjct: 115 KVVKVVTGTMTESMIHDYMNLIKPGETSGLEHHH 148

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} Length = 150

 Score = 67.8 bits (166), Expect = 6e-14
 Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 14/122 (11%)

Query: 217 EKVPVSSLV--GKTVGLYFSARWCIPC--EKFMPKLLSIYQKIKQNLVEKGDALEDFEVV 272
           EK+  SS     K++ + F A W      ++   +L  IY+K K+N        +   ++
Sbjct: 22  EKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKN--------KYIGML 73

Query: 273 FVSTDRDQTSFESYF--GTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 330
            +S D D+  ++      T+ W  +        E+ K + +  IP  +++  +GK + K 
Sbjct: 74  GISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYKIPANILLSSDGKILAKN 133

Query: 331 GR 332
            R
Sbjct: 134 LR 135

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} Length = 150

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 29/149 (19%), Positives = 56/149 (37%), Gaps = 21/149 (14%)

Query: 46  LLNQHGTQVKVSD--LEGKVTALYFSANWYPPCGNFTGV--LVDVYEELRNNGSDFEVVF 101
           L N  G ++  S    + K   + F A+W            L ++Y++ + N     ++ 
Sbjct: 16  LPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNK-YIGMLG 74

Query: 102 VSSDEDLNAFNNY--RACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDAT 159
           +S D D   + +   R  + W  V          + +++ I  IP  ++L          
Sbjct: 75  ISLDVDKQQWKDAIKRDTLDWEQV-CDFGGLNSEVAKQYSIYKIPANILL----SS---- 125

Query: 160 LHDGVELIYKYGIRAFPFTKEKLEELQKE 188
             DG   I    +R     K+K+E + +E
Sbjct: 126 --DGK--ILAKNLRG-EELKKKIENIVEE 149

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Length = 158

 Score = 65.0 bits (159), Expect = 8e-13
 Identities = 20/115 (17%), Positives = 42/115 (36%), Gaps = 15/115 (13%)

Query: 217 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 276
           E   ++   GK V + F A WC  C   MP +  + +   +          D  V+ V+ 
Sbjct: 32  ENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPK---------GDLVVLAVNV 82

Query: 277 DRDQTSF-ESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 330
           ++           +  +L+    D T  ++ + +    +P   I+  +G    + 
Sbjct: 83  EKRFPEKYRRAPVSFNFLS----DAT-GQVQQRYGANRLPDTFIVDRKGIIRQRV 132

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Length = 158

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 20/151 (13%), Positives = 47/151 (31%), Gaps = 21/151 (13%)

Query: 46  LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 105
           L    G    ++   GK+  + F A+W P C +    +  + +          V+ V+ +
Sbjct: 26  LPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGD--LVVLAVNVE 83

Query: 106 EDLNAF-NNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGV 164
           +              +L       +    + +++    +P   ++    D+       G+
Sbjct: 84  KRFPEKYRRAPVSFNFL------SDATGQVQQRYGANRLPDTFIV----DR------KGI 127

Query: 165 ELIYKYGIRAF--PFTKEKLEELQKEEKEKH 193
                 G   +  P     L+ L+      H
Sbjct: 128 IRQRVTGGIEWDAPKVVSYLKSLEGHHHHHH 158

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Length = 138

 Score = 64.2 bits (157), Expect = 8e-13
 Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 15/114 (13%)

Query: 217 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 276
           +   +S   GK V L F A WC  C   +P    I ++            +   +  VS 
Sbjct: 13  KTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGD---------DYVVLTVVSP 63

Query: 277 DRD----QTSFESYFGTMPWLALP-FGDPTIKELTKYFDVQGIPCLVIIGPEGK 325
                  +  F++++  + +  LP   DP+  +L + + V+  P    I  EGK
Sbjct: 64  GHKGEQSEADFKNWYKGLDYKNLPVLVDPS-GKLLETYGVRSYPTQAFIDKEGK 116

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Length = 138

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 27/145 (18%), Positives = 49/145 (33%), Gaps = 19/145 (13%)

Query: 46  LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 105
           L+   G   ++SD +GK   L F A+W   C        ++ +E  ++     +  VS  
Sbjct: 7   LMGVDGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDY--VVLTVVSPG 64

Query: 106 ED----LNAFNNYRACMPWLAVP-YSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATL 160
                    F N+   + +  +P   D      L   + +   P    +    DK     
Sbjct: 65  HKGEQSEADFKNWYKGLDYKNLPVLVD--PSGKLLETYGVRSYPTQAFI----DK----- 113

Query: 161 HDGVELIYKYGIRAFPFTKEKLEEL 185
            +G  +    G        + L+EL
Sbjct: 114 -EGKLVKTHPGFMEKDAILQTLKEL 137

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.1 bits (168), Expect = 1e-12
 Identities = 58/376 (15%), Positives = 119/376 (31%), Gaps = 113/376 (30%)

Query: 36  SLLASKDRDYLLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGS 95
           S+L+ ++ D+++            +  V+                  L      L +   
Sbjct: 44  SILSKEEIDHIIMS----------KDAVSGTLR--------------LFWT---LLSKQE 76

Query: 96  DFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDK 155
           +    FV  +E L    NY     +L  P    + + ++  +  IE            D+
Sbjct: 77  EMVQKFV--EEVLRI--NY----KFLMSPIKTEQRQPSMMTRMYIE----------QRDR 118

Query: 156 DDATLHDGVELIYKYGI-RAFPFT--KEKLEELQKEEKEKHERQTLINLLTNHDRGYLLG 212
               L++  ++  KY + R  P+   ++ L EL+  +            +     G +LG
Sbjct: 119 ----LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN-----------VLID--G-VLG 160

Query: 213 HPPDEKVPVSSLVGKTV-------------GLYFSARW-----CIPCEKFMPKLLSIYQK 254
                        GKT               + F   W     C   E  +  L  +  +
Sbjct: 161 ------------SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 255 IKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPW----LALPFGDPTIKELTKYFD 310
           I  N   + D   + ++   S    Q        + P+    L L   +    +    F+
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSI---QAELRRLLKSKPYENCLLVL--LNVQNAKAWNAFN 263

Query: 311 VQGIPCLVIIGPEGKTVTKQGRNLINLY---QENAYPFTEAK-LEFLEKQMEEEAKNLPR 366
           +    C +++    K VT         +     ++   T  +    L K ++   ++LPR
Sbjct: 264 LS---CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 367 SEFHIGHRHELNLVSE 382
            E    +   L++++E
Sbjct: 321 -EVLTTNPRRLSIIAE 335

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} Length = 165

 Score = 64.3 bits (157), Expect = 2e-12
 Identities = 27/164 (16%), Positives = 50/164 (30%), Gaps = 28/164 (17%)

Query: 217 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 276
           +    +SL GK   + F A WC PC   +P ++ + +               F  V ++ 
Sbjct: 25  KPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWAS---------RGFTFVGIAV 75

Query: 277 DRDQT---SFESYFG-TMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 332
           +       ++    G   P +                 + GIP   +I   G        
Sbjct: 76  NEQLPNVKNYMKTQGIIYPVMMATPELIRAFNGYIDGGITGIPTSFVIDASGNVSGV--- 132

Query: 333 NLINLYQENAYPFTEAKLE-FLEKQMEEEAKNLPRSEFHIGHRH 375
                      P ++A  +  ++  +  +A      E H  H H
Sbjct: 133 --------IVGPRSKADFDRIVKMALGAKA---ATKEGHHHHHH 165

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} Length = 165

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 34/147 (23%), Positives = 53/147 (36%), Gaps = 21/147 (14%)

Query: 46  LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 105
            +   G     + L+GK   + F A W PPC +    +V V +   + G  F  V ++ +
Sbjct: 19  GVTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRG--FTFVGIAVN 76

Query: 106 EDLNAFNNY--RACMPWLAVPYSDLETKKALN--RKFDIEGIPCLVVLQPYDDKDDATLH 161
           E L    NY     + +  V  +  E  +A N      I GIP   V+    D       
Sbjct: 77  EQLPNVKNYMKTQGIIYP-VMMATPELIRAFNGYIDGGITGIPTSFVI----DA------ 125

Query: 162 DGVELIYKYGIRAFPFTKEKLEELQKE 188
            G       G    P +K   + + K 
Sbjct: 126 SGNVSGVIVG----PRSKADFDRIVKM 148

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Length = 153

 Score = 63.5 bits (155), Expect = 3e-12
 Identities = 33/163 (20%), Positives = 60/163 (36%), Gaps = 32/163 (19%)

Query: 217 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 276
           + V  + L GK   + F    C  C   MPK++      K          ++F+V+ V+ 
Sbjct: 19  KTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKN---------KNFQVLAVAQ 69

Query: 277 DRDQTS----FESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 332
             D       +   +G +P+  +   D   K + + F  Q  P  V+IG +G+ +     
Sbjct: 70  PIDPIESVRQYVKDYG-LPFTVMY--DAD-KAVGQAFGTQVYPTSVLIGKKGEILKTYVG 125

Query: 333 NLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPRSEFHIGHRH 375
                         E     L ++++   +N   +E H  H H
Sbjct: 126 --------------EPDFGKLYQEIDTAWRN-SDAEGHHHHHH 153

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Length = 153

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 30/150 (20%), Positives = 57/150 (38%), Gaps = 23/150 (15%)

Query: 46  LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 105
           L + HG  V  +DL+GKVT + F     P C +    ++    + +N    F+V+ V+  
Sbjct: 13  LPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKN--FQVLAVAQP 70

Query: 106 ED-----LNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATL 160
            D          +Y   +P+  +     +  KA+ + F  +  P  V++     K     
Sbjct: 71  IDPIESVRQYVKDYG--LPFTVM----YDADKAVGQAFGTQVYPTSVLI----GK----- 115

Query: 161 HDGVELIYKYGIRAFPFTKEKLEELQKEEK 190
             G  L    G   F    ++++   +   
Sbjct: 116 -KGEILKTYVGEPDFGKLYQEIDTAWRNSD 144

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Length = 186

 Score = 63.2 bits (154), Expect = 5e-12
 Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 20/122 (16%)

Query: 216 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 275
            +   +S   GKT+ +   A WC+PC K MP L  +  K+            +FEVV ++
Sbjct: 50  GKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLS---------GPNFEVVAIN 100

Query: 276 TDRDQTS-----FESYFGTMPWLALPFGDPTI---KELTKYFDVQGIPCLVIIGPEGKTV 327
            D           +     +  L   F D      ++L       G+P  V++ P+G  +
Sbjct: 101 IDTRDPEKPKTFLKEA--NLTRLGY-FNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEI 157

Query: 328 TK 329
             
Sbjct: 158 AT 159

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Length = 186

 Score = 49.0 bits (117), Expect = 5e-07
 Identities = 23/111 (20%), Positives = 37/111 (33%), Gaps = 22/111 (19%)

Query: 46  LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGV-----LVDVYEELRNNGSDFEVV 100
             +  G   K+SD  GK   +   A W  PC           L ++  +L      FEVV
Sbjct: 45  FEDADGKPKKLSDFRGKTLLVNLWATWCVPC-----RKEMPALDELQGKLSGPN--FEVV 97

Query: 101 FVSSDED-----LNAFNNYRACMPWLAVPYSDLETK--KALNRKFDIEGIP 144
            ++ D                 +  L   ++D + K  + L       G+P
Sbjct: 98  AINIDTRDPEKPKTFLKEAN--LTRLGY-FNDQKAKVFQDLKAIGRALGMP 145

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} Length = 165

 Score = 62.5 bits (152), Expect = 6e-12
 Identities = 22/161 (13%), Positives = 48/161 (29%), Gaps = 42/161 (26%)

Query: 217 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 276
           E + ++++ G  V L+F A WC  C      L  + +K +           +  V+ +  
Sbjct: 28  EVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR-----------EISVIAIDF 76

Query: 277 DRDQT------------------SFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLV 318
              +                    F  +       +          L + F+V+ I  +V
Sbjct: 77  WTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMVMDD-GSLVEKFNVRSIDYIV 135

Query: 319 IIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEE 359
           I+      +                  +  +LE + K ++ 
Sbjct: 136 IMDKSSNVLYAGTT------------PSLGELESVIKSVQG 164

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} Length = 165

 Score = 51.0 bits (122), Expect = 7e-08
 Identities = 22/133 (16%), Positives = 46/133 (34%), Gaps = 20/133 (15%)

Query: 46  LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 105
           L    G  + ++++ G V  L+F A W P C     +L  + E+ R    +  V+ +   
Sbjct: 22  LTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR----EISVIAIDFW 77

Query: 106 EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVE 165
                       +      Y   +T +   +     G P  +++      D         
Sbjct: 78  TA-----EALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMV----MDDG-------S 121

Query: 166 LIYKYGIRAFPFT 178
           L+ K+ +R+  + 
Sbjct: 122 LVEKFNVRSIDYI 134

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} Length = 151

 Score = 61.7 bits (150), Expect = 1e-11
 Identities = 28/157 (17%), Positives = 46/157 (29%), Gaps = 25/157 (15%)

Query: 210 LLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDF 269
           L G   +    + SL      +   A WC PC K MP +   Y+  K+            
Sbjct: 8   LAGWKDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKK---------GSV 58

Query: 270 EVVFVSTDRDQT--SFESYFG-TMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKT 326
           ++V ++ D      +F      + P       +      T    V  +P  V+  P+   
Sbjct: 59  DMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGY 118

Query: 327 V-TKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAK 362
             T  G               E  L    K    + +
Sbjct: 119 RQTITG------------EVNEKSLTDAVKLAHSKCR 143

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} Length = 151

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 18/153 (11%), Positives = 40/153 (26%), Gaps = 16/153 (10%)

Query: 44  DYLLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS 103
           +    +  T   +  L+  V  +   A W  PC      +   Y+  +      ++V ++
Sbjct: 7   ELAGWKDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGS--VDMVGIA 64

Query: 104 SD--EDLNAF-NNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATL 160
            D  +++  F        P                    +  +P  VV            
Sbjct: 65  LDTSDNIGNFLKQTPVSYPIWRYT-GANSRNFMKTYGNTVGVLPFTVVE----AP----- 114

Query: 161 HDGVELIYKYGIRAFPFTKEKLEELQKEEKEKH 193
                     G        + ++    + +E H
Sbjct: 115 -KCGYRQTITGEVNEKSLTDAVKLAHSKCREGH 146

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 21/110 (19%), Positives = 33/110 (30%), Gaps = 14/110 (12%)

Query: 217 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 276
                +SL GK   L+F   WC  C    P L  +                    V ++T
Sbjct: 15  APFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP-----------AVTFVGIAT 63

Query: 277 DRDQTSFESYFGTMPWLALP-FGDPTIKELTKYFDVQGIPCLVIIGPEGK 325
             D  + +S+      L      D     +   ++V   P  V    +G 
Sbjct: 64  RADVGAMQSFVSKYN-LNFTNLNDAD-GVIWARYNVPWQPAFVFYRADGT 111

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 19/142 (13%), Positives = 42/142 (29%), Gaps = 22/142 (15%)

Query: 46  LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 105
                G     + L+GK   L+F   W P C      L  V             V +++ 
Sbjct: 9   ATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAA----NPAVTFVGIATR 64

Query: 106 EDLNAFNNY--RACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 163
            D+ A  ++  +  + +  +     +    +  ++++   P  V              DG
Sbjct: 65  ADVGAMQSFVSKYNLNFTNL----NDADGVIWARYNVPWQPAFVFY----RA------DG 110

Query: 164 VELIYKYGIRAFPFTKEKLEEL 185
                         ++++L   
Sbjct: 111 T--STFVNNPTAAMSQDELSGR 130

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Length = 154

 Score = 60.8 bits (148), Expect = 2e-11
 Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 13/115 (11%)

Query: 217 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 276
           E V +S L G+ V + F A WC PC + +P ++ +   +           + F ++ VS 
Sbjct: 19  EVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAG---------KPFRMLCVSI 69

Query: 277 DRDQTSF-ESYFGTMPWLALP-FGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 329
           D       E +F       LP   D   K + K +   G+P   +I   G  + K
Sbjct: 70  DEGGKVAVEEFFRKTG-FTLPVLLDAD-KRVGKLYGTTGVPETFVIDRHGVILKK 122

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Length = 154

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 36/158 (22%), Positives = 57/158 (36%), Gaps = 25/158 (15%)

Query: 46  LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 105
           L   +G  VK+SDL+G+V  + F A W PPC      ++ +   +      F ++ VS D
Sbjct: 13  LNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKP--FRMLCVSID 70

Query: 106 ED-----LNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATL 160
           E         F      +P       D    K + + +   G+P   V+    D+     
Sbjct: 71  EGGKVAVEEFFRKTGFTLP----VLLD--ADKRVGKLYGTTGVPETFVI----DR----- 115

Query: 161 HDGVELIYKYGIRAF--PFTKEKLEELQKEEKEKHERQ 196
             GV L    G   +  P     L     + +E H   
Sbjct: 116 -HGVILKKVVGAMEWDHPEVIAFLNNELSKAREGHHHH 152

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} Length = 158

 Score = 60.1 bits (146), Expect = 4e-11
 Identities = 16/121 (13%), Positives = 35/121 (28%), Gaps = 20/121 (16%)

Query: 216 DEKVPVSSLVGKTVGLYFSARWCIPCEK-FMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 274
              + ++ L GK + +      C  C    +P    +     ++            V+ +
Sbjct: 18  ATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPED---------KVAVLGL 68

Query: 275 STDRDQTSFESYFG----------TMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEG 324
            T  +     +               P      GD  +      + ++G P L++I   G
Sbjct: 69  HTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLIDKAG 128

Query: 325 K 325
            
Sbjct: 129 D 129

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} Length = 158

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 20/152 (13%), Positives = 45/152 (29%), Gaps = 22/152 (14%)

Query: 47  LNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTG-VLVDVYEELRNNGSDFEVVFVSSD 105
                T + ++DL GKV  +       P C      +   V      +     V+ + + 
Sbjct: 14  WFNSATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDK--VAVLGLHTV 71

Query: 106 EDLNAFNNYRACMPWLA---VPY------SDLETKKALNRKFDIEGIPCLVVLQPYDDKD 156
            + +      +   +L    + +                  + + G P L+++    DK 
Sbjct: 72  FEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLI----DK- 126

Query: 157 DATLHDGVELIYKYGIRAFPFTKEKLEELQKE 188
                 G    + +G  +      ++  L  E
Sbjct: 127 -----AGDLRAHHFGDVSELLLGAEIATLLGE 153

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} Length = 159

 Score = 59.7 bits (145), Expect = 6e-11
 Identities = 36/146 (24%), Positives = 54/146 (36%), Gaps = 24/146 (16%)

Query: 217 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 276
           ++V +SSL GK V L F+A WC  C K MP +             K     DF ++ +  
Sbjct: 24  KQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIW-------LKHKDNADFALIGIDR 76

Query: 277 DRDQTSFESYFGT--MPWLALPFGDPTIKELTKY-FDVQGIPCLVIIGPEGKTVTKQGRN 333
           D       ++  +  + +      DP      KY     GI   V+I  EGK V      
Sbjct: 77  DEPLEKVLAFAKSTGVTYPLGL--DPGADIFAKYALRDAGITRNVLIDREGKIVKLTR-- 132

Query: 334 LINLYQENAYPFTEAKLEFLEKQMEE 359
                      + E +   L +Q+ E
Sbjct: 133 ----------LYNEEEFASLVQQINE 148

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} Length = 159

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 29/158 (18%), Positives = 51/158 (32%), Gaps = 26/158 (16%)

Query: 46  LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGV-----LVDVYEELRNNGSDFEVV 100
           +    G QV +S L GKV  L F+A+W   C           +         + +DF ++
Sbjct: 18  ITLTDGKQVTLSSLRGKVVMLQFTASWCGVC-----RKEMPFIEKDIWLKHKDNADFALI 72

Query: 101 FVSSDEDLNAFNNY--RACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDA 158
            +  DE L     +     + +      D              GI   V++    D+   
Sbjct: 73  GIDRDEPLEKVLAFAKSTGVTYPLG--LDPGADIFAKYALRDAGITRNVLI----DR--- 123

Query: 159 TLHDGVELIYKYGIRA--FPFTKEKLEELQKEEKEKHE 194
              +G  +          F    +++ E+ KE    H 
Sbjct: 124 ---EGKIVKLTRLYNEEEFASLVQQINEMLKEGHHHHH 158

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} Length = 352

 Score = 61.2 bits (148), Expect = 2e-10
 Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 21/120 (17%)

Query: 214 PPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVF 273
           P ++ + + SL GK V + F A  CI C++ +P ++  YQ  K              V+ 
Sbjct: 70  PGNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKD---------SGLAVIG 120

Query: 274 VSTDRDQT--------SFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGK 325
           V T                +  G + +      D         +  +  P   +I   G 
Sbjct: 121 VHTPEYAFEKVPGNVAKGAANLG-ISYPIAL--DNN-YATWTNYRNRYWPAEYLIDATGT 176

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} Length = 352

 Score = 51.9 bits (124), Expect = 1e-07
 Identities = 24/158 (15%), Positives = 48/158 (30%), Gaps = 27/158 (17%)

Query: 44  DYLLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS 103
            +L       + +  L GKV  + F A     C      +V  Y+  +++G    V+ V 
Sbjct: 65  GWLNTPGNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSG--LAVIGVH 122

Query: 104 SDED---------LNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDD 154
           + E               N    + +     ++  T       +     P   ++    D
Sbjct: 123 TPEYAFEKVPGNVAKGAANLG--ISYPIALDNNYATWTN----YRNRYWPAEYLI----D 172

Query: 155 KDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEK 192
                   G     K+G   +  T+  + +L  + K  
Sbjct: 173 A------TGTVRHIKFGEGDYNVTETLVRQLLNDAKPG 204

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A Length = 148

 Score = 56.9 bits (138), Expect = 4e-10
 Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 16/114 (14%)

Query: 217 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 276
           E      +  K   ++F +  C  C++ MP++     K +          +   VV V  
Sbjct: 20  EVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQ----------DQLNVVAVHM 69

Query: 277 -----DRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGK 325
                D D    +        +  P    +   LT  F+ + +P   +    G+
Sbjct: 70  PRSEDDLDPGKIKETAAEHD-ITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQ 122

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A Length = 148

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 20/149 (13%), Positives = 45/149 (30%), Gaps = 28/149 (18%)

Query: 51  GTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED--- 107
           G   +   +  K T ++F +     C      + +  ++ ++      VV V        
Sbjct: 19  GEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQD---QLNVVAVHMPRSEDD 75

Query: 108 ------LNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 161
                       +    P        +++  AL   F+ E +P   V     DK      
Sbjct: 76  LDPGKIKETAAEHDITQPIF------VDSDHALTDAFENEYVPAYYVF----DK------ 119

Query: 162 DGVELIYKYGIRAFPFTKEKLEELQKEEK 190
            G    ++ G       ++++  +  E +
Sbjct: 120 TGQLRHFQAGGSGMKMLEKRVNRVLAETE 148

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Length = 164

 Score = 56.3 bits (136), Expect = 8e-10
 Identities = 18/115 (15%), Positives = 38/115 (33%), Gaps = 16/115 (13%)

Query: 217 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 276
               V     K   + F A WC  C   + +     Q  K +            ++ V++
Sbjct: 29  RPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFS---------SANLITVAS 79

Query: 277 D-----RDQTSFESYFGTMPWLALP-FGDPTIKELTKYFDVQGIPCLVIIGPEGK 325
                 +    F+ ++  + +  LP   D     + +  ++   P   +IG +G 
Sbjct: 80  PGFLHEKKDGEFQKWYAGLNYPKLPVVTDNG-GTIAQNLNISVYPSWALIGKDGD 133

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Length = 164

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 20/151 (13%), Positives = 43/151 (28%), Gaps = 16/151 (10%)

Query: 46  LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 105
           +         V   + K T + F A+W P C +  G      ++ + +     ++ V+S 
Sbjct: 23  MKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSS--ANLITVASP 80

Query: 106 EDLNAFNNYRACMPWLAVPYSDLE----TKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 161
             L+   +      +  + Y  L         + +  +I   P   ++     K      
Sbjct: 81  GFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQNLNISVYPSWALI----GK------ 130

Query: 162 DGVELIYKYGIRAFPFTKEKLEELQKEEKEK 192
           DG       G          +     +    
Sbjct: 131 DGDVQRIVKGSINEAQALALIRNPNADLGSL 161

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Length = 136

 Score = 55.8 bits (135), Expect = 9e-10
 Identities = 21/116 (18%), Positives = 34/116 (29%), Gaps = 13/116 (11%)

Query: 217 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 276
                 SL+GK   L+F A WC  C+   P +  +                +   V V+ 
Sbjct: 16  HDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP-----------EVTFVGVAG 64

Query: 277 DRDQTSFESYFGTMPWLALP-FGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG 331
                + + +    P        D     +   F V   P    + P G     +G
Sbjct: 65  LDQVPAMQEFVNKYPVKTFTQLADTD-GSVWANFGVTQQPAYAFVDPHGNVDVVRG 119

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Length = 136

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 18/101 (17%), Positives = 31/101 (30%), Gaps = 9/101 (8%)

Query: 46  LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 105
                G       L GK   L+F A W P C     V+  V         +   V V+  
Sbjct: 10  AKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAAS----HPEVTFVGVAGL 65

Query: 106 EDLNAFNNY--RACMPWLAVPYSDLETKKALNRKFDIEGIP 144
           + + A   +  +  +          +T  ++   F +   P
Sbjct: 66  DQVPAMQEFVNKYPVKTFTQL---ADTDGSVWANFGVTQQP 103

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} Length = 160

 Score = 54.8 bits (132), Expect = 3e-09
 Identities = 17/121 (14%), Positives = 41/121 (33%), Gaps = 21/121 (17%)

Query: 217 EKVPVSSLVGKTVGLYFSARWCIPCEK-FMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 275
           E +    L GK V +      C  C    +P+   I++ I +            +V+ + 
Sbjct: 21  EGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDE---------SQVQVIGLH 71

Query: 276 TDRDQTSFESYFGTMPWLA---LPF--------GDPTIKELTKYFDVQGIPCLVIIGPEG 324
           +  +     +      ++    + F            I    K + ++G P +++   +G
Sbjct: 72  SVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADRKG 131

Query: 325 K 325
           +
Sbjct: 132 R 132

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} Length = 160

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 22/152 (14%), Positives = 49/152 (32%), Gaps = 23/152 (15%)

Query: 51  GTQVKVSDLEGKVTALYFSANWYPPCGNFTG-VLVDVYEELRNNGSDFEVVFVSSDEDLN 109
              +   DL GKV  +       P C N        ++  +  +    +V+ + S  + +
Sbjct: 20  HEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQ--VQVIGLHSVFEHH 77

Query: 110 AFNNYRACMPWLA---VPY-------SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDAT 159
                 A   ++    + +        + +   +  +K+ +EG P +++     D+    
Sbjct: 78  DVMTPEALKVFIDEFGIKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILA----DR---- 129

Query: 160 LHDGVELIYKYGIRAFPFTKEKLEELQKEEKE 191
              G     ++G          L  L  E  E
Sbjct: 130 --KGRIRQVQFGQVDDFVLGLLLGSLLSETDE 159

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} Length = 145

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 15/109 (13%)

Query: 226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS---TDRDQTS 282
           G+   L+F   WC PC+K +P+  S Y              +  ++V V+   ++++Q  
Sbjct: 34  GQKTILHFWTSWCPPCKKELPQFQSFYDAHPS---------DSVKLVTVNLVNSEQNQQV 84

Query: 283 FESYFGTMPWLALP-FGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 330
            E +      L  P   D    EL K + +  IP   ++  +G+    +
Sbjct: 85  VEDFIKANK-LTFPIVLDSK-GELMKEYHIITIPTSFLLNEKGEIEKTK 131

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} Length = 145

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 30/144 (20%), Positives = 58/144 (40%), Gaps = 24/144 (16%)

Query: 46  LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS-- 103
           +    G  + + + +G+ T L+F  +W PPC          Y+   ++    ++V V+  
Sbjct: 20  MKTIEGEDISIPN-KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDS--VKLVTVNLV 76

Query: 104 -SDEDLNAFNNYRACMPWLAVP-YSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 161
            S+++     ++      L  P   D  +K  L +++ I  IP   +L    ++      
Sbjct: 77  NSEQNQQVVEDFIKANK-LTFPIVLD--SKGELMKEYHIITIPTSFLL----NE------ 123

Query: 162 DGVELIYKYGIRAFPFTKEKLEEL 185
            G     K G    P T E+L+E 
Sbjct: 124 KGEIEKTKIG----PMTAEQLKEW 143

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} Length = 183

 Score = 54.0 bits (130), Expect = 7e-09
 Identities = 14/116 (12%), Positives = 37/116 (31%), Gaps = 8/116 (6%)

Query: 214 PPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVF 273
               ++ +S    + V L    +WC PC      L  I+++++              V+ 
Sbjct: 47  EEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQA---AGNGDTPGGTVLG 103

Query: 274 VSTDRDQTS----FESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGK 325
           ++           F +  G + + ++                  IP  +++  + +
Sbjct: 104 INVRDYSRDIAQDFVTDNG-LDYPSIYDPPFMTAASLGGVPASVIPTTIVLDKQHR 158

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} Length = 183

 Score = 42.1 bits (99), Expect = 9e-05
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 46  LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGS----DFEVVF 101
            L + GTQ+ +SD E +V  L     W  PC + +  L  ++EEL+  G+       V+ 
Sbjct: 44  SLMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLG 103

Query: 102 VSSDED 107
           ++  + 
Sbjct: 104 INVRDY 109

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Length = 134

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 27/105 (25%)

Query: 226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFES 285
           GK V L   A WC+ C++F     S          +   AL D  ++  +   +      
Sbjct: 31  GKPVMLDLYADWCVACKEFEKYTFS--------DPQVQKALADTVLLQANVTAN------ 76

Query: 286 YFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 330
                        D     L K+ +V G+P ++    +G+   + 
Sbjct: 77  -------------DAQDVALLKHLNVLGLPTILFFDGQGQEHPQA 108

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} Length = 154

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 28/121 (23%), Positives = 42/121 (34%), Gaps = 17/121 (14%)

Query: 214 PPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVF 273
           P  + V  +++    V + F A WC  C+   P L  + +       E G     F V+ 
Sbjct: 19  PKGQPVTPATVSKPAV-IVFWASWCTVCKAEFPGLHRVAE-------ETGV---PFYVIS 67

Query: 274 VSTDRDQTSFESYFG----TMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 329
                 +     Y       +P LA    D    E+   F V G P   ++  EGK V  
Sbjct: 68  REPRDTREVVLEYMKTYPRFIPLLASDR-DRP-HEVAARFKVLGQPWTFVVDREGKVVAL 125

Query: 330 Q 330
            
Sbjct: 126 F 126

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A Length = 170

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 7/64 (10%)

Query: 46  LLNQHGTQVKVSDLEGKVTALYFSANWY---P-PCGNFTGVLVDVYEELRNNGSDFEVVF 101
           L++ +G + ++ +L+GK   L      Y      C   T  L+ V  +L   G DF V+ 
Sbjct: 13  LVDSYGNEFQLKNLKGKPIILSPI---YTHCRAACPLITKSLLKVIPKLGTPGKDFWVIT 69

Query: 102 VSSD 105
            + D
Sbjct: 70  FTFD 73

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} Length = 133

 Score = 42.6 bits (100), Expect = 3e-05
 Identities = 23/131 (17%), Positives = 39/131 (29%), Gaps = 30/131 (22%)

Query: 226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFES 285
            K   L F A WC  C + + K L   +             + FEVV +           
Sbjct: 29  HKPTLLVFGANWCTDC-RALDKSLRNQKNTAL-------IAKHFEVVKIDVGNFDR---- 76

Query: 286 YFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPF 345
                        +  + +        GIP +V++  +GK               NA   
Sbjct: 77  -------------NLELSQAYGDPIQDGIPAVVVVNSDGKVRYTT----KGGELANARKM 119

Query: 346 TEAKL-EFLEK 355
           ++  + +F  K
Sbjct: 120 SDQGIYDFFAK 130

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Length = 130

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 34/110 (30%)

Query: 226 GKTVGLYFSARWCIPCEKFMPKLLS---IYQKIKQNLVEKGDALEDFEVVFVSTDRDQTS 282
           G+ V +YF +  C  C++    +LS   + + ++                FV       +
Sbjct: 19  GRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEAR--------------FVVASVSVDT 64

Query: 283 FESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 332
            E                  +EL + + V G P  V + P+     + GR
Sbjct: 65  PEG-----------------QELARRYRVPGTPTFVFLVPKAGAWEEVGR 97

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105

 Score = 40.7 bits (96), Expect = 7e-05
 Identities = 15/122 (12%), Positives = 35/122 (28%), Gaps = 43/122 (35%)

Query: 227 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESY 286
           + V L+     C  C+  + K+  + +                 V  +            
Sbjct: 19  QLVLLFIKTENCGVCDVMLRKVNYVLENYNY-------------VEKIEILLQD------ 59

Query: 287 FGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR--------NLINLY 338
                          ++E+   + V   P +++    GK + ++ R          I L+
Sbjct: 60  ---------------MQEIAGRYAVFTGPTVLLF-YNGKEILRESRFISLENLERTIQLF 103

Query: 339 QE 340
           +E
Sbjct: 104 EE 105

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126

 Score = 41.3 bits (97), Expect = 8e-05
 Identities = 10/98 (10%), Positives = 23/98 (23%), Gaps = 31/98 (31%)

Query: 233 FSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPW 292
           F    C  C +           + +    K +      + +   + ++            
Sbjct: 33  FKTDTCPYCVEMQK----ELSYVSKEREGKFN------IYYARLEEEKN----------- 71

Query: 293 LALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 330
                      +L   +D   +P  V +  EG      
Sbjct: 72  ----------IDLAYKYDANIVPTTVFLDKEGNKFYVH 99

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A Length = 174

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 46  LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNF----TGVLVDVYEELRNNGSDFEVVF 101
             NQ G  V +  L+G+V    F    +  C       T  + D+ ++L+    D  ++ 
Sbjct: 18  FQNQDGKNVSLESLKGEVWLADF---IFTNCETICPPMTAHMTDLQKKLKAENIDVRIIS 74

Query: 102 VSSD 105
            S D
Sbjct: 75  FSVD 78

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Length = 130

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 28/115 (24%)

Query: 216 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 275
            E +  + +  K + +     WC PC           +++ + + +     + F   FV+
Sbjct: 17  PEALKRAEVEDKLLFVDCFTTWCGPC-----------KRLSKVVFKDSLVADYFNRHFVN 65

Query: 276 TDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 330
              D    E                   EL K + V   P L+ I   G+ V + 
Sbjct: 66  LKMDMEKGEG-----------------VELRKKYGVHAYPTLLFINSSGEVVYRL 103

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A Length = 164

 Score = 40.0 bits (93), Expect = 4e-04
 Identities = 25/144 (17%), Positives = 48/144 (33%), Gaps = 34/144 (23%)

Query: 226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFES 285
           G  + +     WC  C+   PK             E  +   +F  V V+ + ++     
Sbjct: 46  GLPLMVIIHKSWCGACKALKPKFAE--------STEISELSHNF--VMVNLEDEE----- 90

Query: 286 YFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPF 345
                        +P  ++     D   IP ++ + P GK   +    +IN     +Y +
Sbjct: 91  -------------EPKDEDF--SPDGGYIPRILFLDPSGKVHPE----IINENGNPSYKY 131

Query: 346 TEAKLEFLEKQMEEEAKNLPRSEF 369
                E + + M+E  + L    F
Sbjct: 132 FYVSAEQVVQGMKEAQERLTGDAF 155

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} Length = 154

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 20/107 (18%)

Query: 226 GKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFE 284
            K +GL+F+ + WC+ C   M   +    + K              +  V  D  Q + +
Sbjct: 47  HKPIGLFFTGSDWCMWC-IKMQDQILQSSEFKHFAGVH--------LHMVEVDFPQKNHQ 97

Query: 285 SYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG 331
                             +EL   + V G P LV I  EGK + + G
Sbjct: 98  P----------EEQRQKNQELKAQYKVTGFPELVFIDAEGKQLARMG 134

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A Length = 160

 Score = 39.1 bits (92), Expect = 7e-04
 Identities = 22/106 (20%), Positives = 36/106 (33%), Gaps = 23/106 (21%)

Query: 46  LLNQHGTQVKVSDLEG-KVTALYFSANWYPPCGNFTGV-------LVDVYEELRNNGSDF 97
           L +Q+   V +    G K   L F    +P    FTG+       L D   E  N+ S  
Sbjct: 20  LRDQNQQLVTLRGYRGAKNVLLVF----FP--LAFTGICQGELDQLRDHLPEFENDDS-- 71

Query: 98  EVVFVSSD--EDLNAF-NNYRACMPWLAVPYSDLETKKALNRKFDI 140
             + +S         +        P L    SD     A+++ + +
Sbjct: 72  AALAISVGPPPTHKIWATQSGFTFPLL----SDFWPHGAVSQAYGV 113

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} Length = 172

 Score = 39.3 bits (91), Expect = 8e-04
 Identities = 26/137 (18%), Positives = 42/137 (30%), Gaps = 19/137 (13%)

Query: 226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFES 285
            K V L F+   C+ C K M   +    K+   +        D+ ++ +  D      E 
Sbjct: 47  NKPVMLDFTGYGCVNCRK-MELAVWTDPKVSSII------NNDYVLITLYVDNKTPLTEP 99

Query: 286 YFGTMPWLALPF---GDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENA 342
                          GD         F     P  V+I  EG  + K        Y E+ 
Sbjct: 100 VKIMENGTERTLRTVGDKWSYLQRVKFGANAQPFYVLIDNEGNPLNKSYA-----YDEDI 154

Query: 343 YPFTEAKLEFLEKQMEE 359
             +    + FL+  +E 
Sbjct: 155 SKY----INFLQTGLEN 167

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	428
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.94
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.9
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.9
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.9
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.89
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.89
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.89
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.89
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.89
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.89
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.89
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	99.89
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	99.89
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.88
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.88
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.88
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.88
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.88
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.88
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.88
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	99.88
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.88
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.88
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.87
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	99.87
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	99.87
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.87
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.87
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.87
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.87
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.87
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.86
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.86
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.86
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	99.86
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.86
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.86
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.85
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.85
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	99.85
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.85
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.85
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.84
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.84
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	99.84
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	99.84
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.84
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.84
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	99.84
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	99.84
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.84
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.84
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.84
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.84
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	99.84
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	99.84
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	99.83
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.83
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	99.83
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	99.83
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	99.83
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	99.83
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	99.83
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.83
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.83
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.83
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.83
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	99.83
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.83
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	99.83
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	99.83
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	99.83
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	99.83
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	99.82
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	99.82
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.82
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	99.82
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	99.82
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	99.82
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	99.82
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.82
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	99.71
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	99.82
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	99.82
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.82
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	99.82
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	99.82
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	99.82
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.81
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	99.81
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.81
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	99.81
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	99.81
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.81
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	99.81
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.81
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.81
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	99.81
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.81
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	99.7
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.81
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	99.81
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.81
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.81
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	99.81
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.81
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	99.81
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	99.8
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	99.8
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	99.8
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.8
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.8
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	99.8
3me7_A	170	Putative uncharacterized protein; electron transfe	99.8
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.79
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.79
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	99.79
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.79
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	99.79
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	99.67
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	99.79
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.79
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	99.79
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	99.79
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.79
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.79
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.79
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.78
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.78
3me7_A	170	Putative uncharacterized protein; electron transfe	99.78
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	99.78
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	99.78
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	99.78
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.78
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	99.78
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.78
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	99.78
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	99.78
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	99.78
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.78
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	99.78
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	99.78
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.78
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.77
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	99.77
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	99.77
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.77
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	99.77
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.77
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	99.77
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	99.77
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	99.77
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	99.77
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.77
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	99.77
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	99.77
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	99.76
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	99.76
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	99.76
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.76
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.76
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	99.76
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	99.76
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.76
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	99.76
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.76
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.76
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	99.75
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	99.75
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	99.75
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	99.75
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	99.75
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	99.75
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	99.75
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	99.75
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	99.75
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	99.75
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	99.6
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	99.75
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	99.75
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	99.75
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	99.74
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	99.74
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	99.74
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	99.74
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	99.74
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.74
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	99.74
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	99.74
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	99.74
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	99.73
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	99.73
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	99.73
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.73
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	99.72
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.72
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.72
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	99.71
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	99.7
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	99.7
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	99.7
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.7
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	99.7
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	99.69
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	99.67
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	99.67
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	99.67
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	99.65
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	99.65
1v5n_A	89	PDI-like hypothetical protein AT1G60420; DC1 domai	99.63
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.63
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	99.63
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.62
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.62
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.62
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.59
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	99.59
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.58
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	99.58
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.58
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.56
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.56
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.56
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.55
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.54
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	99.53
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.53
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	99.52
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.52
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.51
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	99.51
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.51
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	99.5
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.49
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.49
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.49
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.48
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.48
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.48
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.48
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.48
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.48
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.48
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.47
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.47
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.47
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.47
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.47
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	99.47
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.46
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.46
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.46
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.46
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	99.46
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.46
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.45
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.45
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.45
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.45
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.45
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.45
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.45
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.45
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.45
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.45
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.45
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.44
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.44
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.44
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.43
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.43
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.43
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.43
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.43
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.43
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.43
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.43
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.42
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.41
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.41
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.41
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.41
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.41
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.41
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.41
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.41
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.4
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.4
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.4
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.4
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.4
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.39
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.39
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.39
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.39
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.39
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	99.08
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.38
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.38
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.37
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.37
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.36
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.36
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.36
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.35
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.35
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.35
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.34
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.34
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.34
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.33
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.33
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.33
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.33
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.32
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.32
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	99.32
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.32
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.31
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.31
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.31
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.31
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.3
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.3
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.3
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.3
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.3
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.3
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.3
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.3
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.3
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.29
3ira_A	173	Conserved protein; methanosarcina mazei,structural	99.29
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.28
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	99.28
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.28
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.28
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.28
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.27
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.27
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.27
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.27
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.27
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.27
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.27
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.26
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.26
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.26
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.26
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.26
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.26
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.26
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.25
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.25
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.25
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.24
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.24
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.24
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.24
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.23
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.23
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.23
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.23
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.22
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.22
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.21
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	99.21
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	98.85
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.21
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.21
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.21
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.21
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.2
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	99.2
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.2
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.2
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.2
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.2
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.2
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	98.83
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.19
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	99.19
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.19
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.19
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.19
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.19
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.18
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.18
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.18
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.18
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.18
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.17
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.17
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.17
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.16
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.16
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.16
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.16
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.15
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.15
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.15
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.15
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.13
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.12
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.11
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.11
3ira_A	173	Conserved protein; methanosarcina mazei,structural	99.11
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.1
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.1
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.1
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.09
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	99.09
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.08
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.08
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.08
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	99.06
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.05
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.04
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.02
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	98.58
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.01
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.01
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.0
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.0
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	98.99
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	98.98
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	98.97
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	98.96
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	98.95
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	98.94
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	98.93
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	98.92
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	98.92
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	98.92
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	98.89
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	98.89
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	98.8
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	98.8
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	98.76
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	98.74
1ttz_A	87	Conserved hypothetical protein; structural genomic	98.73
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	98.71
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	98.69
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	98.67
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	98.59
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	98.56
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	98.56
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	98.54
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	98.52
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	98.51
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	98.5
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	98.49
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	98.46
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	98.46
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	98.45
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	98.43
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	98.41
1ttz_A	87	Conserved hypothetical protein; structural genomic	98.4
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.38
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	98.35
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	98.35
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	98.34
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	98.31
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	98.31
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	98.29
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	98.27
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	98.21
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	98.19
1z6m_A	175	Conserved hypothetical protein; structural genomic	98.17
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	98.17
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	98.16
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	98.1
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	98.1
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	98.09
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	98.05
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.01
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	97.97
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	97.9
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	97.87
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	97.82
1kte_A	105	Thioltransferase; redox-active center, electron tr	97.76
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	97.75
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	97.74
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	97.71
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	97.69
1z6m_A	175	Conserved hypothetical protein; structural genomic	97.68
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	97.65
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	97.64
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	97.63
1kte_A	105	Thioltransferase; redox-active center, electron tr	97.6
4h86_A	199	Peroxiredoxin type-2; oxidoreductase; 2.00A {Sacch	97.59
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	97.56
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	97.49
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	97.45
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	97.45
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	97.45
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	97.42
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	97.42
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	97.42
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	97.41

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.94  E-value=4e-26  Score=211.90  Aligned_cols=202  Identities=20%  Similarity=0.314  Sum_probs=143.3

Q ss_pred             ccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccC
Q 014225           47 LNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYS  126 (428)
Q Consensus        47 ~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~  126 (428)
                      ...+++.+.....+||+++|+|||+||++|+.+.|.|.++++++++.+.++.++.|+.|..                   
T Consensus        18 ~~l~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~-------------------   78 (241)
T 3idv_A           18 LVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSA-------------------   78 (241)
T ss_dssp             EEECTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTC-------------------
T ss_pred             EEecccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCC-------------------
Confidence            3445555554445789999999999999999999999999999998765677777766543                   


Q ss_pred             ChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccccchhhhhhcccCccccchhhHHHHHHHHHHHHHHHHHhhhhccCC
Q 014225          127 DLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHD  206 (428)
Q Consensus       127 d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~~~~~~i~~~g~~~~p~t~~~~~~l~~~~~~~~~~~~~~~~~g~~~  206 (428)
                           ..+++.|++.++|++++++    +|+.+...        |.    .+..   .+........      .....+.
T Consensus        79 -----~~l~~~~~v~~~Pt~~~~~----~g~~~~~~--------g~----~~~~---~l~~~i~~~~------~~~~~~~  128 (241)
T 3idv_A           79 -----SVLASRFDVSGYPTIKILK----KGQAVDYE--------GS----RTQE---EIVAKVREVS------QPDWTPP  128 (241)
T ss_dssp             -----HHHHHHTTCCSSSEEEEEE----TTEEEECC--------SC----SCHH---HHHHHHHHHH------STTCCCC
T ss_pred             -----HHHHHhcCCCcCCEEEEEc----CCCccccc--------Cc----ccHH---HHHHHHhhcc------Ccccccc
Confidence                 6789999999999999997    57554221        10    1111   1211111100      0001122


Q ss_pred             CCcccCCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHH
Q 014225          207 RGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESY  286 (428)
Q Consensus       207 p~f~l~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~  286 (428)
                      +......++. .+...-..+++++|+||++||++|+.+.|.|.+++++++++       +.++.++.|+++.+       
T Consensus       129 ~~~~~~~~~~-~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~-------~~~v~~~~vd~~~~-------  193 (241)
T 3idv_A          129 PEVTLVLTKE-NFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKR-------SPPIPLAKVDATAE-------  193 (241)
T ss_dssp             CCSSEECCTT-THHHHHHHCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTS-------SSCCCEEEEETTTC-------
T ss_pred             cccceeccHH-HHHHhhccCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhcc-------CCcEEEEEEECCCC-------
Confidence            2333244444 33322235689999999999999999999999999999865       44688898888865       


Q ss_pred             HhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEec
Q 014225          287 FGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK  329 (428)
Q Consensus       287 ~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~  329 (428)
                                      .++++.|+|.++||++++ ++|+.+..
T Consensus       194 ----------------~~l~~~~~v~~~Pt~~~~-~~g~~~~~  219 (241)
T 3idv_A          194 ----------------TDLAKRFDVSGYPTLKIF-RKGRPYDY  219 (241)
T ss_dssp             ----------------HHHHHHTTCCSSSEEEEE-ETTEEEEC
T ss_pred             ----------------HHHHHHcCCcccCEEEEE-ECCeEEEe
Confidence                            679999999999999999 56877664

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.90  E-value=3.9e-23  Score=176.31  Aligned_cols=136  Identities=32%  Similarity=0.588  Sum_probs=121.2

Q ss_pred             ccccccC-c-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhc-CCCcEEEEEEecCCChHHHHHH
Q 014225           38 LASKDRD-Y-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRN-NGSDFEVVFVSSDEDLNAFNNY  114 (428)
Q Consensus        38 ~g~~~pd-f-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~~~~~~ii~vs~D~~~~~~~~~  114 (428)
                      ++..+|+ | |.+.+|+++++++++||+++|+||++||++|+.++|.|+++++++++ .+  +++++|++|.+.+.++++
T Consensus         3 ~~~~~P~~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~--~~vv~v~~d~~~~~~~~~   80 (144)
T 1i5g_A            3 LKKFFPYSTNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKN--FEVMLISWDESAEDFKDY   80 (144)
T ss_dssp             TTTSCSSCSEEEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTT--EEEEEEECCSSHHHHHHH
T ss_pred             hhhhCCCceEEEcCCCCEecHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCC--EEEEEEeCCCCHHHHHHH
Confidence            5788999 9 99999999999999999999999999999999999999999999985 34  999999999999999999


Q ss_pred             HhcCCCceeccCChHHHHHHHhhcCCCCCceEEEEc-CCCCCCCcccccchhhhhhccc-Cccccc
Q 014225          115 RACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQ-PYDDKDDATLHDGVELIYKYGI-RAFPFT  178 (428)
Q Consensus       115 ~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid-~~~~dG~i~~~~~~~~i~~~g~-~~~p~t  178 (428)
                      +++++|..+++...+....+++.|++.++|+++||| +   +|+++.......+..... ..+||.
T Consensus        81 ~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~---~G~i~~~~~~~~~~~~~~~~~~~w~  143 (144)
T 1i5g_A           81 YAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEAD---SGNIITTQARTMVVKDPEAKDFPWP  143 (144)
T ss_dssp             HTTCSSEECCTTCHHHHHHHHHHTTCCSSSEEEEEETT---TCCEEESCHHHHHHHCTTCTTTTCC
T ss_pred             HHhCCccccccCchHHHHHHHHHcCCCCCCEEEEEECC---CCcEEeccchhhhhhCcccccCCCC
Confidence            999999888886545558999999999999999999 9   999999988877766543 345553

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.90  E-value=1.8e-23  Score=178.14  Aligned_cols=120  Identities=13%  Similarity=0.199  Sum_probs=108.6

Q ss_pred             hhhccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHH---HHHHHHhhhhhcCCCCCCEEEEEEE
Q 014225          200 NLLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLS---IYQKIKQNLVEKGDALEDFEVVFVS  275 (428)
Q Consensus       200 ~~~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~---l~~~~~~~~~~~~~~~~~~~iv~is  275 (428)
                      ..+|.++|+|++ +.+|+ .+++++++||++||+||++||++|+.++|.|.+   ++++|++.         ++.|++|+
T Consensus         5 ~~~G~~ap~f~l~~~~g~-~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~---------~~~vi~i~   74 (142)
T 3eur_A            5 NRLGTKALNFTYTLDSGV-KGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAK---------KLKVLSIY   74 (142)
T ss_dssp             TCTTSBCCCCEEEETTSC-EEETTTCCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTT---------SEEEEEEE
T ss_pred             hcCCCccCCcEEEcCCCC-EeeHHHcCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccC---------CeEEEEEE
Confidence            467999999999 99999 999999999999999999999999999999999   99999876         89999999


Q ss_pred             cCCCHHHHHHHHhcCCccccccCCcchh--HHHHhcCcCccceEEEECCCCcEEecc
Q 014225          276 TDRDQTSFESYFGTMPWLALPFGDPTIK--ELTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       276 ~d~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      +|.+.+.+++++.+++ +.++...|...  .+.+.|++.++|+++|||++|+|+.++
T Consensus        75 ~d~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  130 (142)
T 3eur_A           75 PDEELDEWKKHRNDFA-KEWTNGYDKELVIKNKNLYDLRAIPTLYLLDKNKTVLLKD  130 (142)
T ss_dssp             CSSCHHHHHHHGGGSC-TTSEEEECTTCHHHHTTCSCCTTCSEEEEECTTCBEEEEE
T ss_pred             cCCCHHHHHHHHHhcc-cccccccCccchhhhhhhcCCCcCCeEEEECCCCcEEecC
Confidence            9999999999999887 35566555443  378999999999999999999999985

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.90  E-value=3.7e-23  Score=175.86  Aligned_cols=118  Identities=14%  Similarity=0.267  Sum_probs=109.2

Q ss_pred             hhccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHH---HHHHHHhhhhhcCCCCCCEEEEEEEc
Q 014225          201 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLS---IYQKIKQNLVEKGDALEDFEVVFVST  276 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~---l~~~~~~~~~~~~~~~~~~~iv~is~  276 (428)
                      .+|.++|+|++ +.+|+ .+++++++||++||+||++||++|+.++|.|.+   ++++|++.         ++.|++|++
T Consensus         2 ~~G~~~p~f~l~~~~g~-~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~---------~~~~v~v~~   71 (142)
T 3ewl_A            2 NAGMKAADFTYVTVHGD-NSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENG---------TLRVLAIYP   71 (142)
T ss_dssp             CTTSBCCCCEEECTTCC-EEEGGGCCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHT---------SEEEEEEEC
T ss_pred             CCCCcCCCCEEECCCCC-EEEhhhcCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccC---------CeEEEEEEe
Confidence            36999999999 99999 999999999999999999999999999999998   99999876         799999999


Q ss_pred             CCCHHHHHHHHhcCCccccccCCcchhHHHH--hcCcCccceEEEECCCCcEEec
Q 014225          277 DRDQTSFESYFGTMPWLALPFGDPTIKELTK--YFDVQGIPCLVIIGPEGKTVTK  329 (428)
Q Consensus       277 d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~v~~~P~~~lid~~G~i~~~  329 (428)
                      |.+.+.+++++.+++ +++|...|....+..  .|++.++|+++|||++|+|+.+
T Consensus        72 d~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~  125 (142)
T 3ewl_A           72 DENREEWATKAVYMP-QGWIVGWNKAGDIRTRQLYDIRATPTIYLLDGRKRVILK  125 (142)
T ss_dssp             SSCHHHHHHHHTTSC-TTCEEEECTTCHHHHTTCSCCCSSSEEEEECTTCBEEEC
T ss_pred             cCCHHHHHHHHHHcC-CCcceeeCCccchhhHHHcCCCCCCeEEEECCCCCEEec
Confidence            999999999999888 578888887777766  9999999999999999999985

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.89  E-value=3.4e-23  Score=181.51  Aligned_cols=140  Identities=33%  Similarity=0.618  Sum_probs=123.2

Q ss_pred             cccccccccCc--cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHH
Q 014225           35 SSLLASKDRDY--LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN  112 (428)
Q Consensus        35 ~~~~g~~~pdf--l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~  112 (428)
                      .+.+|..+|+|  |.+.+| ++++++++||+|||+||++||++|+.++|.|++++++|++.. ++++++|++|.+.+.++
T Consensus        21 ~~~vG~~~P~f~~l~~~~g-~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~-~v~vv~v~~d~~~~~~~   98 (165)
T 3s9f_A           21 MSGVAKHLGEALKLRKQAD-TADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSK-NFEIILASWDEEEDDFN   98 (165)
T ss_dssp             -CHHHHHHHHTSCEEETTE-EECSGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTT-TEEEEEEECCCSHHHHH
T ss_pred             hhhhcccCCcceeeecCCC-cccHHHcCCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCC-CeEEEEEecCCCHHHHH
Confidence            44678999998  899999 999999999999999999999999999999999999998731 39999999999999999


Q ss_pred             HHHhcCCCceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCC-CCcccccchhhhhh-cccCccccch
Q 014225          113 NYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDK-DDATLHDGVELIYK-YGIRAFPFTK  179 (428)
Q Consensus       113 ~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~d-G~i~~~~~~~~i~~-~g~~~~p~t~  179 (428)
                      +++++++|..+++...+....+++.|++.++|+++|||+   + |+++.+...+.+.+ .....|||..
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~lid~---~~G~iv~~~~~~~~~~d~~~~~fpw~~  164 (165)
T 3s9f_A           99 AYYAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGLNA---DTGDTVTTRARHALTQDPMGEQFPWRD  164 (165)
T ss_dssp             HHHTTCSSEECCTTCHHHHHHHHHHTTCCSSSEEEEEET---TTCCEEESCHHHHHHHCTTCTTTTCCC
T ss_pred             HHHHhCCCcccccCchhHHHHHHHHcCCCCCCEEEEEeC---CCCEEEecccHHHHhhCcccccCCCCC
Confidence            999999999999877665589999999999999999999   9 99999988766544 4455577753

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.89  E-value=8.2e-23  Score=176.08  Aligned_cols=135  Identities=22%  Similarity=0.271  Sum_probs=118.9

Q ss_pred             hccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCH
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ  280 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~  280 (428)
                      +|.++|+|++ +.+|+ .+++++++||+++|+||++||++|+.++|.|.+++++|+++         ++.|++|++|.+.
T Consensus         5 ~g~~~p~f~l~~~~G~-~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~---------~~~vv~v~~d~~~   74 (152)
T 2lrn_A            5 TGSVAPAITGIDLKGN-SVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDK---------GFTIYGVSTDRRE   74 (152)
T ss_dssp             TTEECCCCEEECSSSC-EEESGGGTTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTT---------TEEEEEEECCSCH
T ss_pred             CCCcCCCceeEcCCCC-EEeHHHcCCCEEEEEEECCCChhHHHHHHHHHHHHHHhccC---------CeEEEEEEccCCH
Confidence            6889999999 99999 99999999999999999999999999999999999999865         7999999999989


Q ss_pred             HHHHHHHhcCCccccccCCcc---hhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHH
Q 014225          281 TSFESYFGTMPWLALPFGDPT---IKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQM  357 (428)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l  357 (428)
                      +.+++++.+.+ +++|...|.   ...+++.|++.++|+++|||++|+++.+..              +.   ++|.+.|
T Consensus        75 ~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~--------------~~---~~l~~~l  136 (152)
T 2lrn_A           75 EDWKKAIEEDK-SYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKEL--------------RG---DDLYNTV  136 (152)
T ss_dssp             HHHHHHHHHHT-CCSEEEEECHHHHHHHHHHTTCCSSCEEEEECTTSEEEEECC--------------CT---THHHHHH
T ss_pred             HHHHHHHHHhC-CCCeEEecccchhHHHHHHhCCCcCCeEEEECCCCeEEEeeC--------------CH---HHHHHHH
Confidence            99999998776 567777776   688999999999999999999999998841              11   4667777


Q ss_pred             HHHHhcC
Q 014225          358 EEEAKNL  364 (428)
Q Consensus       358 ~~~~~~~  364 (428)
                      +++++..
T Consensus       137 ~~l~~~~  143 (152)
T 2lrn_A          137 EKFVNGA  143 (152)
T ss_dssp             HHHHTSS
T ss_pred             HHHHhhc
Confidence            7777644

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.89  E-value=5.5e-23  Score=175.43  Aligned_cols=127  Identities=37%  Similarity=0.681  Sum_probs=115.9

Q ss_pred             hccCCCC-ccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC
Q 014225          202 LTNHDRG-YLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD  279 (428)
Q Consensus       202 ~g~~~p~-f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~  279 (428)
                      ++..+|+ |++ +.+|+ .+++++++||+++|+||++||++|+.++|.|.+++++|+++        .++.|++|++|.+
T Consensus         3 ~~~~~P~~f~l~~~~g~-~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~--------~~~~vv~v~~d~~   73 (144)
T 1i5g_A            3 LKKFFPYSTNVLKGAAA-DIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK--------KNFEVMLISWDES   73 (144)
T ss_dssp             TTTSCSSCSEEEETTEE-EEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT--------TTEEEEEEECCSS
T ss_pred             hhhhCCCceEEEcCCCC-EecHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccC--------CCEEEEEEeCCCC
Confidence            5788999 999 99999 99999999999999999999999999999999999999752        2799999999999


Q ss_pred             HHHHHHHHhcCCccccccCC-cchhHHHHhcCcCccceEEEEC-CCCcEEeccccchhhc
Q 014225          280 QTSFESYFGTMPWLALPFGD-PTIKELTKYFDVQGIPCLVIIG-PEGKTVTKQGRNLINL  337 (428)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~v~~~P~~~lid-~~G~i~~~~~~~~~~~  337 (428)
                      .+.+++|+.+++|..+|+.. |....+++.|+|.++|+++||| ++|+++.++++..+..
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~~G~i~~~~~~~~~~~  133 (144)
T 1i5g_A           74 AEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVK  133 (144)
T ss_dssp             HHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHH
T ss_pred             HHHHHHHHHhCCccccccCchHHHHHHHHHcCCCCCCEEEEEECCCCcEEeccchhhhhh
Confidence            99999999999999999876 5678899999999999999999 9999999987766543

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.89  E-value=1.2e-22  Score=174.53  Aligned_cols=134  Identities=20%  Similarity=0.240  Sum_probs=117.6

Q ss_pred             hhccCCCCccc-CCCCCceeccc--ccCCcEEEEEEeccCChh--HHhhhHHHHHHHHHH-HhhhhhcCCCCCCEEEEEE
Q 014225          201 LLTNHDRGYLL-GHPPDEKVPVS--SLVGKTVGLYFSARWCIP--CEKFMPKLLSIYQKI-KQNLVEKGDALEDFEVVFV  274 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g~~~v~l~--~~~gk~vll~F~a~wC~~--C~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~iv~i  274 (428)
                      .+|.++|+|++ +.+|+ .++++  +++||+++|+||++||++  |+.++|.|.+++++| +++         ++.+++|
T Consensus         6 ~~G~~~p~f~l~~~~g~-~~~l~~~~~~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~---------~~~~v~v   75 (150)
T 3fw2_A            6 EIGKYAPFFSLPNAKGE-KITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNK---------YIGMLGI   75 (150)
T ss_dssp             STTSBCCCCCEEBTTCC-EECTTSTTTTTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCS---------SEEEEEE
T ss_pred             cCCCcCCccEeECCCCC-EEecchhhhCCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCC---------CeEEEEE
Confidence            36999999999 99999 99999  999999999999999999  999999999999999 654         7999999


Q ss_pred             EcCCCHHHHHHHHhcCCccccccCCcc---hhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHH
Q 014225          275 STDRDQTSFESYFGTMPWLALPFGDPT---IKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLE  351 (428)
Q Consensus       275 s~d~~~~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~  351 (428)
                      ++|.+.+.+++|+++++ +++|...|.   ...+.+.|++.++|+++|||++|+|+.+..              +   .+
T Consensus        76 ~~d~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~--------------~---~~  137 (150)
T 3fw2_A           76 SLDVDKQQWKDAIKRDT-LDWEQVCDFGGLNSEVAKQYSIYKIPANILLSSDGKILAKNL--------------R---GE  137 (150)
T ss_dssp             ECCSCHHHHHHHHHHTT-CCSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEESC--------------C---HH
T ss_pred             EcCCCHHHHHHHHHHhC-CCceEEEcCcccchHHHHHcCCCccCeEEEECCCCEEEEccC--------------C---HH
Confidence            99999899999999877 466766665   679999999999999999999999999852              1   25


Q ss_pred             HHHHHHHHHHh
Q 014225          352 FLEKQMEEEAK  362 (428)
Q Consensus       352 ~L~~~l~~~~~  362 (428)
                      +|.+.|+++++
T Consensus       138 ~l~~~l~~ll~  148 (150)
T 3fw2_A          138 ELKKKIENIVE  148 (150)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            66677776665

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.89  E-value=8.3e-23  Score=173.95  Aligned_cols=122  Identities=17%  Similarity=0.227  Sum_probs=107.5

Q ss_pred             ccccccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHH---HHHHHhcCCCcEEEEEEecCCChHHH
Q 014225           36 SLLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVD---VYEELRNNGSDFEVVFVSSDEDLNAF  111 (428)
Q Consensus        36 ~~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~---l~~~~~~~~~~~~ii~vs~D~~~~~~  111 (428)
                      ..+|..+|+| |.+.+|+++++++++||+++|+||++||++|+.++|.|++   +++++++.+  +++++|+.|.+.+.+
T Consensus         5 ~~~G~~ap~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~--~~vi~i~~d~~~~~~   82 (142)
T 3eur_A            5 NRLGTKALNFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKK--LKVLSIYPDEELDEW   82 (142)
T ss_dssp             TCTTSBCCCCEEEETTSCEEETTTCCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTS--EEEEEEECSSCHHHH
T ss_pred             hcCCCccCCcEEEcCCCCEeeHHHcCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCC--eEEEEEEcCCCHHHH
Confidence            4679999999 9999999999999999999999999999999999999999   999998876  999999999999999


Q ss_pred             HHHHhcCCCceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCccccc
Q 014225          112 NNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       112 ~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~~  162 (428)
                      ++++++++.......+.+....+.+.|++.++|+++|||+   +|+++.+.
T Consensus        83 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~~  130 (142)
T 3eur_A           83 KKHRNDFAKEWTNGYDKELVIKNKNLYDLRAIPTLYLLDK---NKTVLLKD  130 (142)
T ss_dssp             HHHGGGSCTTSEEEECTTCHHHHTTCSCCTTCSEEEEECT---TCBEEEEE
T ss_pred             HHHHHhcccccccccCccchhhhhhhcCCCcCCeEEEECC---CCcEEecC
Confidence            9999987743222334443356899999999999999999   99998764

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.89  E-value=1.5e-22  Score=173.22  Aligned_cols=137  Identities=34%  Similarity=0.635  Sum_probs=119.8

Q ss_pred             cccccccC-c-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHH
Q 014225           37 LLASKDRD-Y-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNY  114 (428)
Q Consensus        37 ~~g~~~pd-f-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~  114 (428)
                      .+++.+|+ | |.+.+| .+++++++||+++|+||++||++|+.++|.|+++++++++.+ ++++++|++|.+.+.++++
T Consensus         3 ~~~~~~P~~f~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~-~~~vv~v~~d~~~~~~~~~   80 (146)
T 1o8x_A            3 GLDKYLPGIEKLRRGDG-EVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESK-NFEVVFCTWDEEEDGFAGY   80 (146)
T ss_dssp             CGGGTSTTCCEEEETTE-EEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTT-TEEEEEEECCCSHHHHHHH
T ss_pred             chHhhCCCceEEEcCCC-CCcHHHhCCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcC-CeEEEEEeCCCCHHHHHHH
Confidence            35788999 8 999999 999999999999999999999999999999999999998521 3999999999999999999


Q ss_pred             HhcCCCceeccCChHHHHHHHhhcCCCCCceEEEEc-CCCCCCCcccccchhhhhhccc-Cccccc
Q 014225          115 RACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQ-PYDDKDDATLHDGVELIYKYGI-RAFPFT  178 (428)
Q Consensus       115 ~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid-~~~~dG~i~~~~~~~~i~~~g~-~~~p~t  178 (428)
                      +++++|..+++...+....+++.|++.++|+++||| +   +|+++.....+.+.+... ..++|.
T Consensus        81 ~~~~~~~~~~~~~~d~~~~~~~~~~v~~~Pt~~lid~~---~G~i~~~~~~~~~~~~~~~~~~~w~  143 (146)
T 1o8x_A           81 FAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDAD---SGDVVTTRARATLVKDPEGEQFPWK  143 (146)
T ss_dssp             HTTCSSEECCGGGHHHHHHHHHHTTCCSSSEEEEEETT---TCCEEESCHHHHHTTCTTCTTTTCC
T ss_pred             HHHCCceeeccchhhHHHHHHHHhCCCCCCEEEEEECC---CCeEEEecchhHHhhCCccccCCCC
Confidence            999999888876545558999999999999999999 9   999999988776655443 345554

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.89  E-value=8.7e-23  Score=175.49  Aligned_cols=140  Identities=23%  Similarity=0.411  Sum_probs=120.7

Q ss_pred             hccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCH
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ  280 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~  280 (428)
                      +|.++|+|.+ +.+|+ .+++++++||++||+||++||++|+.++|.|.++++++++.         ++.+++|++|.+.
T Consensus         2 ~G~~~p~~~l~~~~g~-~~~l~~~~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~---------~v~vv~v~~d~~~   71 (151)
T 2f9s_A            2 EGSDAPNFVLEDTNGK-RIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQ---------GVEIVAVNVGESK   71 (151)
T ss_dssp             CCEECCCCEEECTTCC-EEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG---------TEEEEEEEESCCH
T ss_pred             CCCcCCcceeEcCCCC-EEEHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccC---------CeEEEEEECCCCH
Confidence            4889999999 99999 99999999999999999999999999999999999999876         7999999999888


Q ss_pred             HHHHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHH
Q 014225          281 TSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEE  360 (428)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~  360 (428)
                      +.+++|+..++ +.+|+..|....+.+.|++.++|+++|||++|+++.+..+.           .+   .++|.+.|+++
T Consensus        72 ~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~G~-----------~~---~~~l~~~l~~l  136 (151)
T 2f9s_A           72 IAVHNFMKSYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGT-----------MT---ESMIHDYMNLI  136 (151)
T ss_dssp             HHHHHHHHHHT-CCSCEEEETTSHHHHHTTCCSSCEEEEECTTSEEEEEEESC-----------CC---HHHHHHHHHHH
T ss_pred             HHHHHHHHHcC-CCceEEECCchHHHHhcCCCCCCeEEEECCCCcEEEEEeCC-----------CC---HHHHHHHHHHH
Confidence            99999999877 57888888888999999999999999999999999874321           12   35677777777


Q ss_pred             HhcCCC
Q 014225          361 AKNLPR  366 (428)
Q Consensus       361 ~~~~~~  366 (428)
                      ++....
T Consensus       137 l~~~~~  142 (151)
T 2f9s_A          137 KPGETS  142 (151)
T ss_dssp             SCC---
T ss_pred             Hhhhhc
Confidence            665433

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=99.89  E-value=6.6e-24  Score=184.54  Aligned_cols=137  Identities=24%  Similarity=0.249  Sum_probs=110.6

Q ss_pred             hccCCCCccc-CCCCCceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD  279 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~  279 (428)
                      +|+++|+|++ +.+|+ .+++++++||+++|+|| ++|||+|..++|.|.++++++++.         ++.+++||.| +
T Consensus         6 vG~~aPdF~l~~~~G~-~~~l~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~---------~~~~v~vs~d-~   74 (157)
T 4g2e_A            6 IGELAPDFELPDTELK-KVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQV---------NAVVLGISVD-P   74 (157)
T ss_dssp             TTSBCCCCEEEBTTSC-EEEGGGGTTSCEEEEECSCTTCCC------CCSCGGGGGGGC---------SSEEEEEESS-C
T ss_pred             CCCCCcCeEeECCCCC-EEeHHHHCCCeEEEEecCCCCCCccccchhhccccccccccc---------CceEeeeccc-c
Confidence            6999999999 99999 99999999999999999 899999999999999999999876         8999999998 6


Q ss_pred             HHHHHHHHhcCCccccccCCcchhHHHHhcCcC-----------ccceEEEECCCCcEEeccccchhhcccccCCCCChH
Q 014225          280 QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ-----------GIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEA  348 (428)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~  348 (428)
                      .+..++|.++.+ ++||++.|.+.++++.|||.           ..|++||||++|+|++++.+..         +..+.
T Consensus        75 ~~~~~~~~~~~~-~~~p~l~D~~~~v~~~ygv~~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~---------~~~~~  144 (157)
T 4g2e_A           75 PFSNKAFKEHNK-LNFTILSDYNREVVKKYNVAWEFPALPGYVLAKRAVFVIDKEGKVRYKWVSDD---------PTKEP  144 (157)
T ss_dssp             HHHHHHHHHHTT-CCSEEEECTTSHHHHHTTCEEECTTSTTCEEECEEEEEECTTSBEEEEEEESS---------TTCCC
T ss_pred             hhHHHHHHHHcC-CcEEEEEcCCcHHHHHcCCccccccCCCcceeeeeEEEECCCCEEEEEEECCC---------CCCCC
Confidence            778888888877 68999999999999999983           4689999999999998754322         22333


Q ss_pred             HHHHHHHHHHH
Q 014225          349 KLEFLEKQMEE  359 (428)
Q Consensus       349 ~~~~L~~~l~~  359 (428)
                      ..+++.+.|++
T Consensus       145 ~~~eil~~l~~  155 (157)
T 4g2e_A          145 PYDEIEKVVKS  155 (157)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            45666666654

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.89  E-value=1e-22  Score=177.58  Aligned_cols=140  Identities=15%  Similarity=0.189  Sum_probs=122.7

Q ss_pred             hccCCCCccc-CCCCCceecccccCCcE-EEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSLVGKT-VGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR  278 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~-vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~  278 (428)
                      +|.++|+|++ +.+|+ .+++++++||+ +||+|| ++||++|..++|.|.+++++|+++         ++.||+|++| 
T Consensus         4 ~G~~~P~f~l~~~~G~-~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~---------~v~vv~vs~d-   72 (161)
T 3drn_A            4 VGDKAPLFEGIADNGE-KISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDY---------DVVVIGVSSD-   72 (161)
T ss_dssp             TTSBCCCCEEEETTSC-EEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTT---------CEEEEEEESC-
T ss_pred             CCCcCCCeEeecCCCC-EEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHc---------CCEEEEEeCC-
Confidence            5899999999 99999 99999999997 999999 999999999999999999999976         7999999998 


Q ss_pred             CHHHHHHHHhcCCccccccCCcchhHHHHhcCcCc----cceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHH
Q 014225          279 DQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQG----IPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLE  354 (428)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~----~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~  354 (428)
                      +.+.+++|.++++ +.+|+..|....+.+.|++.+    +|++||||++|+|+.+..+..          ..+..++++.
T Consensus        73 ~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~~~~~P~~~lid~~G~i~~~~~g~~----------~~~~~~~~il  141 (161)
T 3drn_A           73 DINSHKRFKEKYK-LPFILVSDPDKKIRELYGAKGFILPARITFVIDKKGIIRHIYNSQM----------NPANHVNEAL  141 (161)
T ss_dssp             CHHHHHHHHHHTT-CCSEEEECTTSHHHHHTTCCCSSSCCCEEEEECTTSBEEEEEECSS----------CTTHHHHHHH
T ss_pred             CHHHHHHHHHHhC-CCceEEECCcHHHHHHcCCCCcCcccceEEEECCCCEEEEEEecCC----------CCCcCHHHHH
Confidence            6889999999887 568888888899999999999    999999999999998854311          2345667777


Q ss_pred             HHHHHHHhc
Q 014225          355 KQMEEEAKN  363 (428)
Q Consensus       355 ~~l~~~~~~  363 (428)
                      +.|+++...
T Consensus       142 ~~l~~l~~~  150 (161)
T 3drn_A          142 KALKQIKEE  150 (161)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHhhhh
Confidence            777776543

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.88  E-value=1.4e-22  Score=173.03  Aligned_cols=138  Identities=15%  Similarity=0.194  Sum_probs=120.4

Q ss_pred             hhccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC
Q 014225          201 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD  279 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~  279 (428)
                      .+|.++|+|.+ +.+|+ .+++++++||+++|+||++||++|+.++|.|.+++++|+++         ++.+++|++|.+
T Consensus         6 ~~G~~~p~~~l~~~~g~-~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~---------~~~~v~v~~d~~   75 (148)
T 3hcz_A            6 LLGKKAPNLYMTDTTGT-YRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAK---------GIQVYAANIERK   75 (148)
T ss_dssp             CTTSBCCCCCCBCTTSC-BCCGGGCCCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGG---------TEEEEEEECCSS
T ss_pred             CCCCcCCceEEecCCCC-EEEhHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccC---------CEEEEEEEecCC
Confidence            46999999999 99999 99999999999999999999999999999999999999876         799999999988


Q ss_pred             HHHHHHHHhcCCccccccCCcchhH--HHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHH
Q 014225          280 QTSFESYFGTMPWLALPFGDPTIKE--LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQM  357 (428)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l  357 (428)
                      .+.+++|+.++++..++...|....  +++.|++.++|+++|||++|+++.+..+              ...++++.+.+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g--------------~~~~~~~l~~l  141 (148)
T 3hcz_A           76 DEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKRIG--------------YENLDDFLVQY  141 (148)
T ss_dssp             SHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHCCCSSCEEEEECTTCBEEEESCC--------------GGGHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCceEEeccccchhHHHhcCcCCCCEEEEECCCCcEEEecCC--------------HHHHHHHHHHH
Confidence            8899999998886557777776666  9999999999999999999999988532              23456666666


Q ss_pred             HHHHh
Q 014225          358 EEEAK  362 (428)
Q Consensus       358 ~~~~~  362 (428)
                      .++++
T Consensus       142 ~~~l~  146 (148)
T 3hcz_A          142 EKSLK  146 (148)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            66554

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.88  E-value=3.7e-22  Score=170.02  Aligned_cols=137  Identities=36%  Similarity=0.631  Sum_probs=120.2

Q ss_pred             ccccccccCc--cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhc-CCCcEEEEEEecCCChHHHH
Q 014225           36 SLLASKDRDY--LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRN-NGSDFEVVFVSSDEDLNAFN  112 (428)
Q Consensus        36 ~~~g~~~pdf--l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~~~~~~ii~vs~D~~~~~~~  112 (428)
                      +.+|..+|+|  |.+.+| ++++++++||+++|+||++||++|+.++|.|+++++++++ .+  +++++|++|.+.+.++
T Consensus         2 ~~~g~~~p~~~~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~--~~vv~i~~d~~~~~~~   78 (144)
T 1o73_A            2 SGLAKYLPGATNLLSKSG-EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKN--FEVVLISWDENESDFH   78 (144)
T ss_dssp             CGGGGTSCTTCCBBCTTS-CBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTT--EEEEEEECCSSHHHHH
T ss_pred             cchhhhCccceEeecCCC-cCcHHHhCCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCC--EEEEEEeCCCCHHHHH
Confidence            3468899996  999999 9999999999999999999999999999999999999984 34  9999999999999999


Q ss_pred             HHHhcCCCceeccCChHHHHHHHhhcCCCCCceEEEEc-CCCCCCCcccccchhhhhhccc-Cccccc
Q 014225          113 NYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQ-PYDDKDDATLHDGVELIYKYGI-RAFPFT  178 (428)
Q Consensus       113 ~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid-~~~~dG~i~~~~~~~~i~~~g~-~~~p~t  178 (428)
                      +++++++|..+++...+....+.+.|++.++|++++|| +   +|+++.+.+.+.+.+... ..|+|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~---~G~i~~~~~~~~~~~~~~~~~~~W~  143 (144)
T 1o73_A           79 DYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINAD---TGAIIGTQARTRVIEDPDGANFPWP  143 (144)
T ss_dssp             HHHTTCSSEECCTTCHHHHHHHHHHHTCCSSSEEEEEETT---TCCEEESCHHHHHHHCTTCTTTTCC
T ss_pred             HHHHhCCceEeeccchhHHHHHHHHcCCCCCCEEEEEECC---CCeEEecchhhHHhhCCCccCCCCC
Confidence            99999999888886555558899999999999999999 9   999999988777655443 335553

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.88  E-value=7.1e-23  Score=179.46  Aligned_cols=136  Identities=35%  Similarity=0.725  Sum_probs=117.3

Q ss_pred             hhccCCCCc-cc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC
Q 014225          201 LLTNHDRGY-LL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR  278 (428)
Q Consensus       201 ~~g~~~p~f-~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~  278 (428)
                      .+|.++|+| .+ +.+|  .+++++++||+|||+||++||++|++++|.|.+++++|++.        .++.|++|++|.
T Consensus        23 ~vG~~~P~f~~l~~~~g--~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~--------~~v~vv~v~~d~   92 (165)
T 3s9f_A           23 GVAKHLGEALKLRKQAD--TADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDS--------KNFEIILASWDE   92 (165)
T ss_dssp             HHHHHHHHTSCEEETTE--EECSGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT--------TTEEEEEEECCC
T ss_pred             hhcccCCcceeeecCCC--cccHHHcCCCEEEEEEECCcChhHHHHHHHHHHHHHHhccC--------CCeEEEEEecCC
Confidence            468889999 78 8887  79999999999999999999999999999999999999862        279999999999


Q ss_pred             CHHHHHHHHhcCCccccccCCcch-hHHHHhcCcCccceEEEECCC-CcEEeccccchh-hcccccCCCCC
Q 014225          279 DQTSFESYFGTMPWLALPFGDPTI-KELTKYFDVQGIPCLVIIGPE-GKTVTKQGRNLI-NLYQENAYPFT  346 (428)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~v~~~P~~~lid~~-G~i~~~~~~~~~-~~~g~~~~p~~  346 (428)
                      +.+.+++++.+++|..+++..+.. ..+++.|+|.++|+++|||++ |+|+.+.++..+ .......||+.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~lid~~~G~iv~~~~~~~~~~d~~~~~fpw~  163 (165)
T 3s9f_A           93 EEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGLNADTGDTVTTRARHALTQDPMGEQFPWR  163 (165)
T ss_dssp             SHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCC
T ss_pred             CHHHHHHHHHhCCCcccccCchhHHHHHHHHcCCCCCCEEEEEeCCCCEEEecccHHHHhhCcccccCCCC
Confidence            999999999999999999877654 899999999999999999998 999999876554 22233334543

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.88  E-value=1.6e-22  Score=175.12  Aligned_cols=139  Identities=12%  Similarity=0.208  Sum_probs=117.4

Q ss_pred             hccCCCCccc-C--CCCCceecccccCCcEEEEEEeccCChhHHhh-hHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC
Q 014225          202 LTNHDRGYLL-G--HPPDEKVPVSSLVGKTVGLYFSARWCIPCEKF-MPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD  277 (428)
Q Consensus       202 ~g~~~p~f~l-~--~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~-~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d  277 (428)
                      .|.++|+|++ +  .+|+ .+++++++||++||+||++||++|+.+ +|.|.+++++|++.         ++.+++|++|
T Consensus         2 ~g~~aP~f~l~~~~~~g~-~~~l~~~~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~---------~v~~v~v~~~   71 (158)
T 3eyt_A            2 NAMKAPELQIQQWFNSAT-DLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPED---------KVAVLGLHTV   71 (158)
T ss_dssp             CCEECCCCCEEEEESCSS-CCCTGGGTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTT---------TEEEEEEECC
T ss_pred             CCCcCCCceehhhhcCCC-ccCHHHhCCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcC---------CEEEEEEEec
Confidence            3788999999 7  3788 999999999999999999999999996 99999999999865         7999999984


Q ss_pred             ------CCHHHHHHHHhcCCccccccCCcchh-----HHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCC
Q 014225          278 ------RDQTSFESYFGTMPWLALPFGDPTIK-----ELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFT  346 (428)
Q Consensus       278 ------~~~~~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~  346 (428)
                            .+.+.+++|+++++ +.+|+..|...     .+++.|++.++|+++|||++|+++.+..+.           .+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~-----------~~  139 (158)
T 3eyt_A           72 FEHHEAMTPISLKAFLHEYR-IKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLIDKAGDLRAHHFGD-----------VS  139 (158)
T ss_dssp             CSCGGGSCHHHHHHHHHHTT-CCSCEEEECCCSSSSCHHHHHTTCCSSSEEEEECTTSEEEEEEESC-----------CC
T ss_pred             ccccccCCHHHHHHHHHHcC-CCceEEEcCccchhhHHHHHHcCCCCCCEEEEECCCCCEEEEEeCC-----------CC
Confidence                  47889999999887 56777666655     799999999999999999999999875331           22


Q ss_pred             hHHHHHHHHHHHHHHhcCC
Q 014225          347 EAKLEFLEKQMEEEAKNLP  365 (428)
Q Consensus       347 ~~~~~~L~~~l~~~~~~~~  365 (428)
                         .++|.+.|+++++...
T Consensus       140 ---~~~l~~~i~~ll~~~~  155 (158)
T 3eyt_A          140 ---ELLLGAEIATLLGEAA  155 (158)
T ss_dssp             ---HHHHHHHHHHHHTSCC
T ss_pred             ---HHHHHHHHHHHhccCC
Confidence               3567888888887543

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.88  E-value=1.2e-22  Score=176.15  Aligned_cols=139  Identities=14%  Similarity=0.182  Sum_probs=119.0

Q ss_pred             hhhccCCCCccc-C-CCCCceecccccCCcEEEEEEeccCChhHHhh-hHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEc
Q 014225          200 NLLTNHDRGYLL-G-HPPDEKVPVSSLVGKTVGLYFSARWCIPCEKF-MPKLLSIYQKIKQNLVEKGDALEDFEVVFVST  276 (428)
Q Consensus       200 ~~~g~~~p~f~l-~-~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~-~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~  276 (428)
                      .+.|.++|+|.+ + .+|+ .+++++++||++||+||++||++|+.+ +|.|.+++++|+++         ++.|++|++
T Consensus         3 ~~~g~~~p~~~~~~~~~g~-~~~l~~~~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~---------~v~~v~v~~   72 (160)
T 3lor_A            3 SLDNAPLLELDVQEWVNHE-GLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDES---------QVQVIGLHS   72 (160)
T ss_dssp             -CTTCCBCCCCEEEESSSC-CCCHHHHTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTT---------TEEEEEEEC
T ss_pred             ccCCCcCCCcccccccCCC-ccCHHHhCCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcC---------CcEEEEEec
Confidence            356899999999 7 8999 999999999999999999999999995 99999999999866         799999998


Q ss_pred             C------CCHHHHHHHHhcCCccccccCCcchhH------HHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCC
Q 014225          277 D------RDQTSFESYFGTMPWLALPFGDPTIKE------LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYP  344 (428)
Q Consensus       277 d------~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p  344 (428)
                      |      .+.+.+++|+++++ +.+|+..|....      +.+.|++.++|+++|||++|+++.+..+.           
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~-----------  140 (160)
T 3lor_A           73 VFEHHDVMTPEALKVFIDEFG-IKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADRKGRIRQVQFGQ-----------  140 (160)
T ss_dssp             CCSCGGGSCHHHHHHHHHHTT-CCSCEEEECCCTTCSSCHHHHHTTCCSSSEEEEECTTSBEEEEEESC-----------
T ss_pred             cccccccCCHHHHHHHHHHcC-CCCcEEECCccccchhhhHHHhcccCccceEEEECCCCcEEEEecCc-----------
Confidence            4      57889999999887 567877776666      99999999999999999999999985431           


Q ss_pred             CChHHHHHHHHHHHHHHhc
Q 014225          345 FTEAKLEFLEKQMEEEAKN  363 (428)
Q Consensus       345 ~~~~~~~~L~~~l~~~~~~  363 (428)
                      .+   .++|.+.|+++++.
T Consensus       141 ~~---~~~l~~~i~~ll~~  156 (160)
T 3lor_A          141 VD---DFVLGLLLGSLLSE  156 (160)
T ss_dssp             CC---HHHHHHHHHHHHTC
T ss_pred             CC---HHHHHHHHHHHHhc
Confidence            22   25677888887764

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.88  E-value=3e-22  Score=183.64  Aligned_cols=151  Identities=9%  Similarity=0.082  Sum_probs=126.3

Q ss_pred             hhccCCCCccc-CCCCCceecccccCCc-EEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC-
Q 014225          201 LLTNHDRGYLL-GHPPDEKVPVSSLVGK-TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD-  277 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g~~~v~l~~~~gk-~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d-  277 (428)
                      .+|.++|+|++ +.+|+ .+++++++|| +|||+||++|||+|+.++|.|++++++|+++         ++.||+|++| 
T Consensus        33 ~~G~~aP~f~l~~~~G~-~v~l~~~~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~---------~v~vv~Vs~d~  102 (218)
T 3u5r_E           33 TLGTRAADFVLPDAGGN-LFTLAEFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQ---------GLAVVAINSND  102 (218)
T ss_dssp             CTTCBCCCCCEECTTCC-EECGGGGTTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTT---------TEEEEEEECSC
T ss_pred             CCCCcCCCcEeECCCCC-EEeHHHhCCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhC---------CcEEEEEECCc
Confidence            36999999999 99999 9999999999 5999999999999999999999999999876         7999999996 


Q ss_pred             ------CCHHHHHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHH
Q 014225          278 ------RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLE  351 (428)
Q Consensus       278 ------~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~  351 (428)
                            .+.+.+++|..+.+ +.||+..|....+++.|++.++|+++|||++|+|++++..+... .+.    ......+
T Consensus       103 ~~~~~~d~~~~~~~~~~~~~-~~~~~l~D~~~~~~~~~~v~~~P~~~liD~~G~i~~~g~~d~~~-~~~----~~~~~~~  176 (218)
T 3u5r_E          103 AQAFPEETLERVGAEVKAYG-YGFPYLKDASQSVAKAYGAACTPDFFLYDRERRLVYHGQFDDAR-PGN----GKDVTGA  176 (218)
T ss_dssp             TTTCGGGSHHHHHHHHHHHT-CCSCEEECTTCHHHHHHTCCEESEEEEECTTCBEEEEECSSSCC-TTS----CCCCCCH
T ss_pred             ccccccCCHHHHHHHHHHhC-CCccEEECCccHHHHHcCCCCCCeEEEECCCCcEEEeccccccc-ccc----ccccCHH
Confidence                  57889999999877 68888888889999999999999999999999999875433210 000    0111236


Q ss_pred             HHHHHHHHHHhcCCCC
Q 014225          352 FLEKQMEEEAKNLPRS  367 (428)
Q Consensus       352 ~L~~~l~~~~~~~~~~  367 (428)
                      +|.+.|++++++.+..
T Consensus       177 ~l~~~i~~ll~~~~~~  192 (218)
T 3u5r_E          177 DLRAAVDAVLKGKDVG  192 (218)
T ss_dssp             HHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHcCCCCC
Confidence            7888888888876543

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.88  E-value=2.3e-21  Score=178.24  Aligned_cols=188  Identities=14%  Similarity=0.150  Sum_probs=124.1

Q ss_pred             cCCCCEEEEEEecC-CChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHh
Q 014225           58 DLEGKVTALYFSAN-WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR  136 (428)
Q Consensus        58 ~~~gk~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~  136 (428)
                      ..++++++++||++ ||++|+...|.+.++++. .+   ++.++.|++|..+.                      ..+++
T Consensus        19 ~~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~-~~---~v~~~~vd~~~~~~----------------------~~~~~   72 (226)
T 1a8l_A           19 KMVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-TD---KLSYEIVDFDTPEG----------------------KELAK   72 (226)
T ss_dssp             GCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-CT---TEEEEEEETTSHHH----------------------HHHHH
T ss_pred             hcCCCeEEEEEecCCCCchhHHHHHHHHHHHhh-CC---ceEEEEEeCCCccc----------------------HHHHH
Confidence            35567889999999 999999999999998754 22   38888776653212                      78999


Q ss_pred             hcCCCCCceEEEEcCCCCCCCcccccchhhhhhcccCccccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCcccCCCCC
Q 014225          137 KFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPD  216 (428)
Q Consensus       137 ~~~v~~~P~~~lid~~~~dG~i~~~~~~~~i~~~g~~~~p~t~~~~~~l~~~~~~~~~~~~~~~~~g~~~p~f~l~~~g~  216 (428)
                      .|++.++|+++++.    +|........      |   .+........+.......          + ...    ..+..
T Consensus        73 ~~~v~~~Pt~~~~~----~g~~~~~~~~------G---~~~~~~l~~~l~~~l~~~----------~-~~~----~l~~~  124 (226)
T 1a8l_A           73 RYRIDRAPATTITQ----DGKDFGVRYF------G---LPAGHEFAAFLEDIVDVS----------R-EET----NLMDE  124 (226)
T ss_dssp             HTTCCSSSEEEEEE----TTBCCSEEEE------S---CCCTTHHHHHHHHHHHHH----------H-TCC----CCCHH
T ss_pred             HcCCCcCceEEEEc----CCceeeEEEe------c---cCcHHHHHHHHHHHHhhc----------C-CCC----CCCHH
Confidence            99999999999996    5643211000      1   111111111111111100          0 000    11111


Q ss_pred             ceec-ccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCcccc
Q 014225          217 EKVP-VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLAL  295 (428)
Q Consensus       217 ~~v~-l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~  295 (428)
                       .+. +....+++++|.||++||++|+.+.|.|.+++++++++.      ..++.++.|+++.+                
T Consensus       125 -~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~------~~~v~~~~vd~~~~----------------  181 (226)
T 1a8l_A          125 -TKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAG------KGKILGDMVEAIEY----------------  181 (226)
T ss_dssp             -HHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTT------CCCEEEEEEEGGGC----------------
T ss_pred             -HHHHHHhcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhccccc------CCcEEEEEEEcccC----------------
Confidence             111 222334556999999999999999999999999987310      12588888888754                


Q ss_pred             ccCCcchhHHHHhcCcCccceEEEECCCCcEEecc
Q 014225          296 PFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       296 ~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                             .++++.|+|.++||++++ ++|+.+.+.
T Consensus       182 -------~~l~~~~~v~~~Pt~~~~-~~G~~~~~~  208 (226)
T 1a8l_A          182 -------PEWADQYNVMAVPKIVIQ-VNGEDRVEF  208 (226)
T ss_dssp             -------HHHHHHTTCCSSCEEEEE-ETTEEEEEE
T ss_pred             -------HHHHHhCCCcccCeEEEE-eCCceeEEE
Confidence                   678999999999998888 789887653

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=99.88  E-value=2.3e-22  Score=171.43  Aligned_cols=119  Identities=16%  Similarity=0.088  Sum_probs=101.0

Q ss_pred             hhccCCCCcccCCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCH
Q 014225          201 LLTNHDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ  280 (428)
Q Consensus       201 ~~g~~~p~f~l~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~  280 (428)
                      .+|.++|+|+++.+|+ .+++++++||+++|+||++||++|+.++|.|.+++++|+++         ++.|++|++|.+.
T Consensus         8 ~~G~~~P~f~l~~~g~-~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~---------~~~vv~vs~d~~~   77 (143)
T 4fo5_A            8 NPGDLAPRIEFLGNDA-KASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPD---------KIAMCSISMDEKE   77 (143)
T ss_dssp             STTSBCCCCCC------CCCSCCSSCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTT---------TEEEEEEECCSCH
T ss_pred             CCcccCCceEEcCCCC-EEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcC---------CEEEEEEEccCCH
Confidence            3689999999988999 99999999999999999999999999999999999999865         7999999999999


Q ss_pred             HHHHHHHhcCCcccc-ccCCc---chhHHHHhcCcCccceEEEECCCCcEEecc
Q 014225          281 TSFESYFGTMPWLAL-PFGDP---TIKELTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       281 ~~~~~~~~~~~~~~~-~~~~d---~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      +.+++++++.+ +.+ +...|   ....+.+.|++.++|+++|||++|+|+.++
T Consensus        78 ~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  130 (143)
T 4fo5_A           78 SIFTETVKIDK-LDLSTQFHEGLGKESELYKKYDLRKGFKNFLINDEGVIIAAN  130 (143)
T ss_dssp             HHHHHHHHHHT-CCGGGEEECTTGGGSHHHHHTTGGGCCCEEEECTTSBEEEES
T ss_pred             HHHHHHHHHhC-CCCceeeecccccchHHHHHcCCCCCCcEEEECCCCEEEEcc
Confidence            99999999765 333 33333   356899999999999999999999999985

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.88  E-value=3.9e-22  Score=171.40  Aligned_cols=138  Identities=25%  Similarity=0.408  Sum_probs=121.1

Q ss_pred             hccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCH
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ  280 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~  280 (428)
                      +|.++|+|.+ + +|. .+++++++||++||+||++||++|+.++|.|.+++++|++.         ++.+++|++|.+.
T Consensus         5 ~G~~~P~f~l~~-~g~-~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~---------~~~~v~v~~d~~~   73 (152)
T 3gl3_A            5 KGDKAPDFALPG-KTG-VVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAK---------GFQVVAVNLDAKT   73 (152)
T ss_dssp             TTSBCCCCEEEB-SSS-EEEGGGGTTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGG---------TEEEEEEECCSSH
T ss_pred             CCCcCCceEeeC-CCC-eEeHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC---------CeEEEEEECCCCH
Confidence            5899999999 8 999 99999999999999999999999999999999999999876         7999999999999


Q ss_pred             HHHHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHH
Q 014225          281 TSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEE  360 (428)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~  360 (428)
                      +.+.+++.+.+ +.+++..|....+.+.|++.++|+++|||++|+++.+..+            ..+...++|.+.|++.
T Consensus        74 ~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g------------~~~~~~~~l~~~i~~~  140 (152)
T 3gl3_A           74 GDAMKFLAQVP-AEFTVAFDPKGQTPRLYGVKGMPTSFLIDRNGKVLLQHVG------------FRPADKEALEQQILAA  140 (152)
T ss_dssp             HHHHHHHHHSC-CCSEEEECTTCHHHHHTTCCSSSEEEEECTTSBEEEEEES------------CCTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHcC-CCCceeECCcchhHHHcCCCCCCeEEEECCCCCEEEEEcc------------CCCcCHHHHHHHHHHH
Confidence            99999999887 5788888888899999999999999999999999987533            1223456777777776


Q ss_pred             Hhc
Q 014225          361 AKN  363 (428)
Q Consensus       361 ~~~  363 (428)
                      +..
T Consensus       141 ~~~  143 (152)
T 3gl3_A          141 LGG  143 (152)
T ss_dssp             TC-
T ss_pred             Hcc
Confidence            553

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.88  E-value=3.6e-22  Score=170.43  Aligned_cols=134  Identities=20%  Similarity=0.295  Sum_probs=117.0

Q ss_pred             hhccCCCCccc-CCCCCceeccc--ccCCcEEEEEEeccCChhHHhhhHHHHHHHHHH-HhhhhhcCCCCCCEEEEEEEc
Q 014225          201 LLTNHDRGYLL-GHPPDEKVPVS--SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKI-KQNLVEKGDALEDFEVVFVST  276 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g~~~v~l~--~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~iv~is~  276 (428)
                      .+|.++|+|.+ +.+|+ .++++  +++||+++|+||++||++|+.++|.|.+++++| ++.         ++.+++|++
T Consensus         6 ~~g~~~p~~~l~~~~g~-~~~l~~~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~---------~~~~v~v~~   75 (148)
T 3fkf_A            6 TVGKSAPYFSLPNEKGE-KLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNK---------NFAMLGISL   75 (148)
T ss_dssp             CTTSBCCCCCEEBTTSC-EECTTSTTTTTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCT---------TEEEEEEEC
T ss_pred             cCCCcCCCeEeeCCCCC-EEeccccccCCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCC---------CeEEEEEEC
Confidence            36999999999 99999 99999  999999999999999999999999999999999 654         799999999


Q ss_pred             CCCHHHHHHHHhcCCccccccCCcc---hhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHH
Q 014225          277 DRDQTSFESYFGTMPWLALPFGDPT---IKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFL  353 (428)
Q Consensus       277 d~~~~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L  353 (428)
                      |.+.+.+++++...+ ++++...|.   ...+++.|++.++|+++|||++|+++.+..                 ..++|
T Consensus        76 d~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~-----------------~~~~l  137 (148)
T 3fkf_A           76 DIDREAWETAIKKDT-LSWDQVCDFTGLSSETAKQYAILTLPTNILLSPTGKILARDI-----------------QGEAL  137 (148)
T ss_dssp             CSCHHHHHHHHHHTT-CCSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEESC-----------------CHHHH
T ss_pred             CCCHHHHHHHHHHcC-CCceEEEccCCcchHHHHhcCCCCcCEEEEECCCCeEEEecC-----------------CHHHH
Confidence            999999999999877 467766665   779999999999999999999999998852                 13566


Q ss_pred             HHHHHHHHh
Q 014225          354 EKQMEEEAK  362 (428)
Q Consensus       354 ~~~l~~~~~  362 (428)
                      .+.|+++++
T Consensus       138 ~~~l~~ll~  146 (148)
T 3fkf_A          138 TGKLKELLK  146 (148)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHHHc
Confidence            777776654

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.87  E-value=4.7e-22  Score=168.98  Aligned_cols=121  Identities=20%  Similarity=0.318  Sum_probs=104.3

Q ss_pred             ccccccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHH---HHHHHhcCCCcEEEEEEecCCChHHH
Q 014225           36 SLLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVD---VYEELRNNGSDFEVVFVSSDEDLNAF  111 (428)
Q Consensus        36 ~~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~---l~~~~~~~~~~~~ii~vs~D~~~~~~  111 (428)
                      |.+|..+|+| |.+.+|+++++++++||+++|+||++||++|+.++|.|.+   +++++++.+  +++++|++|.+.+.+
T Consensus         1 s~~G~~~p~f~l~~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~--~~~v~v~~d~~~~~~   78 (142)
T 3ewl_A            1 SNAGMKAADFTYVTVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGT--LRVLAIYPDENREEW   78 (142)
T ss_dssp             CCTTSBCCCCEEECTTCCEEEGGGCCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTS--EEEEEEECSSCHHHH
T ss_pred             CCCCCcCCCCEEECCCCCEEEhhhcCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCC--eEEEEEEecCCHHHH
Confidence            3579999999 9999999999999999999999999999999999999999   999999876  999999999999999


Q ss_pred             HHHHhcCCCceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          112 NNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       112 ~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +++++++++......+.+......+.|++.++|++++||+   +|+++..
T Consensus        79 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~  125 (142)
T 3ewl_A           79 ATKAVYMPQGWIVGWNKAGDIRTRQLYDIRATPTIYLLDG---RKRVILK  125 (142)
T ss_dssp             HHHHTTSCTTCEEEECTTCHHHHTTCSCCCSSSEEEEECT---TCBEEEC
T ss_pred             HHHHHHcCCCcceeeCCccchhhHHHcCCCCCCeEEEECC---CCCEEec
Confidence            9999988753333334442122245999999999999999   9999864

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=99.87  E-value=3.4e-22  Score=174.22  Aligned_cols=137  Identities=14%  Similarity=0.169  Sum_probs=119.5

Q ss_pred             hhccCCCCcc--c-CCCCCceecccccCCcEEEEEEec-cCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEc
Q 014225          201 LLTNHDRGYL--L-GHPPDEKVPVSSLVGKTVGLYFSA-RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST  276 (428)
Q Consensus       201 ~~g~~~p~f~--l-~~~g~~~v~l~~~~gk~vll~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~  276 (428)
                      .+|.++|+|+  + +.+|+ .+++++++||+++|+||+ +|||+|..++|.|.+++++|+++         +++||+|++
T Consensus         8 ~~G~~~P~f~~~l~~~~G~-~~~l~~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~---------~~~vv~vs~   77 (163)
T 3gkn_A            8 VLELPAATFDLPLSLSGGT-QTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKA---------GAKILGVSR   77 (163)
T ss_dssp             CCCCCGGGGGCCEECSTTC-EECSGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHT---------TCEEEEEES
T ss_pred             ccCCcCCCccccccCCCCC-EEEHHHhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHC---------CCEEEEEeC
Confidence            4699999999  9 99999 999999999999999998 99999999999999999999977         799999999


Q ss_pred             CCCHHHHHHHHhcCCccccccCCcchhHHHHhcCcCc------------cceEEEECCCCcEEeccccchhhcccccCCC
Q 014225          277 DRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQG------------IPCLVIIGPEGKTVTKQGRNLINLYQENAYP  344 (428)
Q Consensus       277 d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~------------~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p  344 (428)
                      | +.+.+++|.++++ ++||+..|....+.+.|++..            +|++||||++|+|++.+..           .
T Consensus        78 d-~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~~-----------~  144 (163)
T 3gkn_A           78 D-SVKSHDNFCAKQG-FAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAWRK-----------V  144 (163)
T ss_dssp             S-CHHHHHHHHHHHC-CSSCEEECTTCHHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEEEECS-----------C
T ss_pred             C-CHHHHHHHHHHhC-CCceEEECCcHHHHHHhCCccccccccccccCcceEEEEECCCCeEEEEEcC-----------C
Confidence            8 7888999988776 678888888899999999987            9999999999999987522           1


Q ss_pred             CChHHHHHHHHHHHHH
Q 014225          345 FTEAKLEFLEKQMEEE  360 (428)
Q Consensus       345 ~~~~~~~~L~~~l~~~  360 (428)
                      .....++++.+.|+++
T Consensus       145 ~~~~~~~~il~~l~~l  160 (163)
T 3gkn_A          145 KVAGHADAVLAALKAH  160 (163)
T ss_dssp             CSTTHHHHHHHHHHHH
T ss_pred             CcccCHHHHHHHHHHH
Confidence            2234566777777654

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=99.87  E-value=1.4e-23  Score=183.93  Aligned_cols=141  Identities=18%  Similarity=0.270  Sum_probs=120.7

Q ss_pred             hccCCCCccc-CCCCCceeccccc--CCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSL--VGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD  277 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~--~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d  277 (428)
                      +|+++|+|++ +.+|+ .++++++  +||+++|+|| ++|||+|..++|.|++++++|++.         ++.+++||.|
T Consensus         7 vG~~aPdF~l~~~~G~-~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~---------~v~vv~is~d   76 (164)
T 4gqc_A            7 LGEKAPDFTLPNQDFE-PVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKA---------NAEVLAISVD   76 (164)
T ss_dssp             TTSBCCCCEEEBTTSC-EEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGS---------SSEEEEEESS
T ss_pred             CCCCCcCcEeECCCCC-EEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhcc---------CceEEEecCC
Confidence            6999999999 99999 9999998  8999999998 999999999999999999999876         8999999998


Q ss_pred             CCHHHHHHHHhcCCccccccCCcchhHHHHhcCcC----------ccceEEEECCCCcEEeccccchhhcccccCCCCCh
Q 014225          278 RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ----------GIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTE  347 (428)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~----------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~  347 (428)
                       +.+..++|..+.+ ++||++.|.+.++++.|||.          ..|++||||++|+|++++....         +..+
T Consensus        77 -~~~~~~~~~~~~~-~~fp~l~D~~~~v~~~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~---------~~~~  145 (164)
T 4gqc_A           77 -SPWCLKKFKDENR-LAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDN---------PLNE  145 (164)
T ss_dssp             -CHHHHHHHHHHTT-CCSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSC---------TTCC
T ss_pred             -CHHHHHHHHHhcC-cccceeecCchHHHHHcCCcccccccCcCCeeeEEEEECCCCEEEEEEEeCC---------CCCC
Confidence             6778888888776 68999999999999999983          4689999999999998753321         3344


Q ss_pred             HHHHHHHHHHHHHHhc
Q 014225          348 AKLEFLEKQMEEEAKN  363 (428)
Q Consensus       348 ~~~~~L~~~l~~~~~~  363 (428)
                      ...+++.+++++++.+
T Consensus       146 ~~~~eil~~l~~l~~e  161 (164)
T 4gqc_A          146 PDYDEVVREANKIAGE  161 (164)
T ss_dssp             CCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhcc
Confidence            4567788888877664

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.87  E-value=7.8e-22  Score=168.71  Aligned_cols=125  Identities=39%  Similarity=0.751  Sum_probs=113.4

Q ss_pred             hccCCCC-ccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC
Q 014225          202 LTNHDRG-YLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD  279 (428)
Q Consensus       202 ~g~~~p~-f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~  279 (428)
                      ++..+|+ |++ +.+|  .+++++++||+++|+||++||++|+.++|.|.+++++|++.        .++.|++|++|.+
T Consensus         4 ~~~~~P~~f~l~~~~g--~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~--------~~~~vv~v~~d~~   73 (146)
T 1o8x_A            4 LDKYLPGIEKLRRGDG--EVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHES--------KNFEVVFCTWDEE   73 (146)
T ss_dssp             GGGTSTTCCEEEETTE--EEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT--------TTEEEEEEECCCS
T ss_pred             hHhhCCCceEEEcCCC--CCcHHHhCCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhc--------CCeEEEEEeCCCC
Confidence            5788999 999 8888  79999999999999999999999999999999999999742        2799999999999


Q ss_pred             HHHHHHHHhcCCccccccCC-cchhHHHHhcCcCccceEEEEC-CCCcEEeccccchhh
Q 014225          280 QTSFESYFGTMPWLALPFGD-PTIKELTKYFDVQGIPCLVIIG-PEGKTVTKQGRNLIN  336 (428)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~v~~~P~~~lid-~~G~i~~~~~~~~~~  336 (428)
                      .+.+++++++++|..+|+.. |....+++.|+|.++|+++||| ++|+++.+.++..+.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~~~~~~~  132 (146)
T 1o8x_A           74 EDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLV  132 (146)
T ss_dssp             HHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHT
T ss_pred             HHHHHHHHHHCCceeeccchhhHHHHHHHHhCCCCCCEEEEEECCCCeEEEecchhHHh
Confidence            99999999999999999876 5678899999999999999999 999999998776543

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.87  E-value=1.2e-21  Score=169.05  Aligned_cols=118  Identities=14%  Similarity=0.179  Sum_probs=105.7

Q ss_pred             hhccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC
Q 014225          201 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD  279 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~  279 (428)
                      ..|.++|+|++ +.+|+ .+++++++||+++|+||++||++|+.++|.|.+++++|+++         ++.|++|++|..
T Consensus        10 ~~g~~~p~f~l~~~~G~-~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~---------~~~vv~i~~d~~   79 (152)
T 2lrt_A           10 IKEASIIDIQLKDLKGN-TRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQ---------GFEIYQISLDGD   79 (152)
T ss_dssp             SCTTCSCCCCEEBTTSC-EECTTTGGGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG---------TEEEEEEECSCC
T ss_pred             ccCCCCCCeEEEcCCCC-EEeHHHhCCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccC---------CeEEEEEEccCC
Confidence            45889999999 99999 99999999999999999999999999999999999999876         799999999999


Q ss_pred             HHHHHHHHhcCCccccccCCcchhH---HHHhcCcCccceEEEECCCCcEEeccc
Q 014225          280 QTSFESYFGTMPWLALPFGDPTIKE---LTKYFDVQGIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~v~~~P~~~lid~~G~i~~~~~  331 (428)
                      .+.++++....   ++|+..|....   +.+.|++.++|+++|||++|+|+.+..
T Consensus        80 ~~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~  131 (152)
T 2lrt_A           80 EHFWKTSADNL---PWVCVRDANGAYSSYISLYNVTNLPSVFLVNRNNELSARGE  131 (152)
T ss_dssp             HHHHHHHHTTC---SSEEEECSSGGGCHHHHHHTCCSCSEEEEEETTTEEEEETT
T ss_pred             HHHHHHHHhCC---CceEEECCCCcchHHHHHcCcccCceEEEECCCCeEEEecC
Confidence            88888888764   45555555554   999999999999999999999999854

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.87  E-value=1.2e-21  Score=174.89  Aligned_cols=147  Identities=10%  Similarity=0.073  Sum_probs=120.3

Q ss_pred             hhccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC--
Q 014225          201 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD--  277 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d--  277 (428)
                      .+|.++|+|++ +.+|+ .+++++++||++||+||++||++|+.++|.|++++++|+++          +.|++|++|  
T Consensus         8 ~~g~~~p~f~l~~~~G~-~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~----------~~~v~v~~d~~   76 (188)
T 2cvb_A            8 PLESPLIDAELPDPRGG-RYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK----------VAFVGINANDY   76 (188)
T ss_dssp             CTTCBCCCCEEECTTSC-EEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT----------EEEEEEECCCT
T ss_pred             CCCCCCCCceeecCCCC-EEeHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcC----------eEEEEEEcCcc
Confidence            35889999999 99999 99999999999999999999999999999999999998743          899999996  


Q ss_pred             -----CCHHHHHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEeccccchhh-cccccCCCCChHHHH
Q 014225          278 -----RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLIN-LYQENAYPFTEAKLE  351 (428)
Q Consensus       278 -----~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~-~~g~~~~p~~~~~~~  351 (428)
                           .+.+.+++|+++++ +.+|+..|....+++.|++.++|+++|||++|+|++++..+... ..|    +.+   .+
T Consensus        77 ~~~~~d~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~g~~~~~~~~~g----~~~---~~  148 (188)
T 2cvb_A           77 EKYPEDAPEKMAAFAEEHG-IFFPYLLDETQEVAKAYRALRTPEVFLFDERRLLRYHGRVNDNPKDPS----KVQ---SH  148 (188)
T ss_dssp             TTCGGGSHHHHHHHHHHHT-CCSCEEECSSSHHHHHTTCCEESEEEEECTTCBEEEEECSSSCTTCGG----GCC---CC
T ss_pred             ccccccCHHHHHHHHHHhC-CCceEEECCcchHHHHcCCCCCCeEEEECCCCcEEEEEecCCcccccc----ccC---HH
Confidence                 36788899988877 57888888888999999999999999999999999882211000 001    111   25


Q ss_pred             HHHHHHHHHHhcCCC
Q 014225          352 FLEKQMEEEAKNLPR  366 (428)
Q Consensus       352 ~L~~~l~~~~~~~~~  366 (428)
                      +|.+.|++++++.+.
T Consensus       149 ~l~~~i~~ll~~~~~  163 (188)
T 2cvb_A          149 DLEAAIEALLRGEEP  163 (188)
T ss_dssp             HHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHcCCCC
Confidence            678888888876544

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.87  E-value=1.9e-21  Score=165.64  Aligned_cols=125  Identities=44%  Similarity=0.791  Sum_probs=112.8

Q ss_pred             hhccCCCCc-cc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC
Q 014225          201 LLTNHDRGY-LL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR  278 (428)
Q Consensus       201 ~~g~~~p~f-~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~  278 (428)
                      .+|..+|+| .+ +.+|  .+++++++||+++|+||++||++|+.++|.|.++++++++.        .++.|++|++|.
T Consensus         3 ~~g~~~p~~~~l~~~~g--~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~--------~~~~vv~i~~d~   72 (144)
T 1o73_A            3 GLAKYLPGATNLLSKSG--EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVA--------KNFEVVLISWDE   72 (144)
T ss_dssp             GGGGTSCTTCCBBCTTS--CBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT--------TTEEEEEEECCS
T ss_pred             chhhhCccceEeecCCC--cCcHHHhCCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccC--------CCEEEEEEeCCC
Confidence            368899997 89 8888  69999999999999999999999999999999999999732        279999999999


Q ss_pred             CHHHHHHHHhcCCccccccCC-cchhHHHHhcCcCccceEEEEC-CCCcEEeccccchh
Q 014225          279 DQTSFESYFGTMPWLALPFGD-PTIKELTKYFDVQGIPCLVIIG-PEGKTVTKQGRNLI  335 (428)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~v~~~P~~~lid-~~G~i~~~~~~~~~  335 (428)
                      +.+.+++++++++|..+|+.. |....+++.|+|.++|+++||| ++|+++.+.++..+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~~~~~~  131 (144)
T 1o73_A           73 NESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRV  131 (144)
T ss_dssp             SHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTCCSSSEEEEEETTTCCEEESCHHHHH
T ss_pred             CHHHHHHHHHhCCceEeeccchhHHHHHHHHcCCCCCCEEEEEECCCCeEEecchhhHH
Confidence            999999999999999999876 5678899999999999999999 89999999876554

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.87  E-value=1.5e-21  Score=169.92  Aligned_cols=140  Identities=18%  Similarity=0.281  Sum_probs=117.2

Q ss_pred             hhccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC
Q 014225          201 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD  279 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~  279 (428)
                      ..|.++|+|.+ +.+|+ .+++++++||++||+||++||++|+.+.|.|.+++++|++.         ++.+++|++|.+
T Consensus         9 ~~g~~~p~~~l~~~~g~-~~~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~---------~v~~v~v~~d~~   78 (165)
T 3or5_A            9 ARPTPAPSFSGVTVDGK-PFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASR---------GFTFVGIAVNEQ   78 (165)
T ss_dssp             CCCCBCCCCEEECTTSC-EEEGGGGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT---------TEEEEEEECSCC
T ss_pred             cCCCCCCCceeeCCCCC-EechhHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccC---------CeEEEEEECCCC
Confidence            46899999999 99999 99999999999999999999999999999999999999866         799999999998


Q ss_pred             HHHHHHHHhcCCccccccCCcchhHHHHhc------CcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHH
Q 014225          280 QTSFESYFGTMPWLALPFGDPTIKELTKYF------DVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFL  353 (428)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~------~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L  353 (428)
                      .+.+++|+.+.+ +.+|+..+.. .+.+.|      ++.++|+++|||++|+++.+..+.           .+   .++|
T Consensus        79 ~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~-----------~~---~~~l  142 (165)
T 3or5_A           79 LPNVKNYMKTQG-IIYPVMMATP-ELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVGP-----------RS---KADF  142 (165)
T ss_dssp             HHHHHHHHHHHT-CCSCEEECCH-HHHHHHHTTSTTCSCSSSEEEEECTTSBEEEEECSC-----------CC---HHHH
T ss_pred             HHHHHHHHHHcC-CCCceEecCH-HHHHHHhhhhccCCCCCCeEEEECCCCcEEEEEcCC-----------CC---HHHH
Confidence            999999998776 5667766654 777888      899999999999999999875331           22   3667


Q ss_pred             HHHHHHHHhcCCC
Q 014225          354 EKQMEEEAKNLPR  366 (428)
Q Consensus       354 ~~~l~~~~~~~~~  366 (428)
                      .+.|+++++....
T Consensus       143 ~~~l~~~l~~~~~  155 (165)
T 3or5_A          143 DRIVKMALGAKAA  155 (165)
T ss_dssp             HHHHHHHHC----
T ss_pred             HHHHHHHHhhhcc
Confidence            7778777765543

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.86  E-value=8e-22  Score=169.80  Aligned_cols=121  Identities=25%  Similarity=0.442  Sum_probs=110.6

Q ss_pred             hhccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC
Q 014225          201 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD  279 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~  279 (428)
                      .+|.++|+|++ +.+|+ .+++++++||+++|+||++||++|+.++|.|.++++++++.         ++.+++|++|.+
T Consensus         3 ~~G~~~p~~~l~~~~g~-~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~---------~~~~v~v~~d~~   72 (154)
T 3kcm_A            3 LEENPAPDFTLNTLNGE-VVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGK---------PFRMLCVSIDEG   72 (154)
T ss_dssp             CTTSBCCCCEEECTTSC-EEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTS---------SEEEEEEECCTT
T ss_pred             CCCCCCCCeEEEcCCCC-EEehhhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccC---------CeEEEEEEcCCc
Confidence            46899999999 99999 99999999999999999999999999999999999999865         799999999987


Q ss_pred             -HHHHHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEecccc
Q 014225          280 -QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       280 -~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~  332 (428)
                       .+.+++++...+ +++|+..|....+.+.|++.++|+++|||++|+++.+..+
T Consensus        73 ~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g  125 (154)
T 3kcm_A           73 GKVAVEEFFRKTG-FTLPVLLDADKRVGKLYGTTGVPETFVIDRHGVILKKVVG  125 (154)
T ss_dssp             HHHHHHHHHHHHC-CCCCEEECTTCHHHHHHTCCSBCEEEEECTTSBEEEEEES
T ss_pred             chHHHHHHHHHcC-CCeeEEecCchHHHHHhCCCCCCeEEEECCCCcEEEEEcC
Confidence             788888888776 5688888888999999999999999999999999987543

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.86  E-value=1.6e-21  Score=167.56  Aligned_cols=139  Identities=18%  Similarity=0.290  Sum_probs=120.3

Q ss_pred             hccCCC-Cccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC
Q 014225          202 LTNHDR-GYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD  279 (428)
Q Consensus       202 ~g~~~p-~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~  279 (428)
                      .|.++| +|.+ +.+|+ .+++++++||+++|+||++||++|+.+.|.|.++++++++.         ++.+++|++|.+
T Consensus         5 ~G~~~p~~f~l~~~~g~-~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~---------~~~~v~v~~d~~   74 (152)
T 2lja_A            5 SGNPSAASFSYPDINGK-TVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGK---------DIHFVSLSCDKN   74 (152)
T ss_dssp             TTCCCSSSCEEEETTTE-EEESTTTTTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTS---------SEEEEEEECCSC
T ss_pred             cCCCCCcccEeecCCCC-EeeHHHcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccC---------CeEEEEEEccCc
Confidence            589999 9999 99999 99999999999999999999999999999999999998765         799999999998


Q ss_pred             HHHHHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHH
Q 014225          280 QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEE  359 (428)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~  359 (428)
                      .+.+++++...++..+++..|....+.+.|++.++|+++|||++|+++.+..+.           .+   .++|.+.|++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~-----------~~---~~~l~~~l~~  140 (152)
T 2lja_A           75 KKAWENMVTKDQLKGIQLHMGTDRTFMDAYLINGIPRFILLDRDGKIISANMTR-----------PS---DPKTAEKFNE  140 (152)
T ss_dssp             HHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCSSCCEEEECTTSCEEESSCCC-----------TT---CHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCceeecCcchhHHHHcCcCCCCEEEEECCCCeEEEccCCC-----------CC---HHHHHHHHHH
Confidence            889999999877655667777788999999999999999999999999985431           12   2566777777


Q ss_pred             HHhcC
Q 014225          360 EAKNL  364 (428)
Q Consensus       360 ~~~~~  364 (428)
                      ++...
T Consensus       141 ~~~~~  145 (152)
T 2lja_A          141 LLGLE  145 (152)
T ss_dssp             HHTCC
T ss_pred             Hhccc
Confidence            76644

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.86  E-value=3.7e-21  Score=178.99  Aligned_cols=117  Identities=9%  Similarity=0.156  Sum_probs=98.8

Q ss_pred             cccccccCc-cccC-CCC--EEeccc-CCCCEEEEEEe-cCCChhhh-hhHHHHHHHHHHHhcCCCcE-EEEEEecCCCh
Q 014225           37 LLASKDRDY-LLNQ-HGT--QVKVSD-LEGKVTALYFS-ANWYPPCG-NFTGVLVDVYEELRNNGSDF-EVVFVSSDEDL  108 (428)
Q Consensus        37 ~~g~~~pdf-l~~~-~G~--~v~l~~-~~gk~vlv~F~-a~wC~~C~-~~~p~l~~l~~~~~~~~~~~-~ii~vs~D~~~  108 (428)
                      .+|+.+|+| |.+. +|+  +++|++ ++||+++|+|| ++||++|+ .++|.|++++++|++.|  + ++++||.|. .
T Consensus         4 ~~G~~aP~f~l~~~~~g~~~~v~l~~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~--~~~vv~is~d~-~   80 (241)
T 1nm3_A            4 MEGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYG--VDDILVVSVND-T   80 (241)
T ss_dssp             CTTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTT--CCEEEEEESSC-H
T ss_pred             cCCCCCCCeEEEcccCCCceeecHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEEEcCC-H
Confidence            368999999 9886 787  899999 89999999999 99999999 99999999999999887  9 999999985 5


Q ss_pred             HHHHHHHhcCCCceec-cCChHHHHHHHhhcCCC-----------CCceEEEEcCCCCCCCccccc
Q 014225          109 NAFNNYRACMPWLAVP-YSDLETKKALNRKFDIE-----------GIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       109 ~~~~~~~~~~~~~~~~-~~d~~~~~~l~~~~~v~-----------~~P~~~lid~~~~dG~i~~~~  162 (428)
                      +..++|.+++++..+| ..|.+  ..+++.||+.           .+|+++|| +   +|+|++..
T Consensus        81 ~~~~~~~~~~~~~~~~~l~D~~--~~~~~~~gv~~~~~~~g~~~~~~p~t~li-~---~G~i~~~~  140 (241)
T 1nm3_A           81 FVMNAWKEDEKSENISFIPDGN--GEFTEGMGMLVGKEDLGFGKRSWRYSMLV-K---NGVVEKMF  140 (241)
T ss_dssp             HHHHHHHHHTTCTTSEEEECTT--SHHHHHTTCEEECTTTTCCEEECCEEEEE-E---TTEEEEEE
T ss_pred             HHHHHHHHhcCCCceEEEECCC--cHHHHHhCceeecccccCcccceeEEEEE-E---CCEEEEEE
Confidence            6788898887654233 23544  7899999985           45899999 8   99998764

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=99.86  E-value=3e-22  Score=170.65  Aligned_cols=119  Identities=12%  Similarity=0.069  Sum_probs=99.1

Q ss_pred             cccccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHH
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYR  115 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~  115 (428)
                      .+|..+|+| | +.+|+++++++++||+++|+||++||++|+.++|.|++++++|++.+  +++++|++|.+.+.+++++
T Consensus         8 ~~G~~~P~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~--~~vv~vs~d~~~~~~~~~~   84 (143)
T 4fo5_A            8 NPGDLAPRIEF-LGNDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDK--IAMCSISMDEKESIFTETV   84 (143)
T ss_dssp             STTSBCCCCCC------CCCSCCSSCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTT--EEEEEEECCSCHHHHHHHH
T ss_pred             CCcccCCceEE-cCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCC--EEEEEEEccCCHHHHHHHH
Confidence            468999999 9 99999999999999999999999999999999999999999998876  9999999999999999999


Q ss_pred             hcCC--C-ceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCccccc
Q 014225          116 ACMP--W-LAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       116 ~~~~--~-~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~~  162 (428)
                      ++++  | ..+.. .......+.+.|++.++|+++|||+   +|+++.+.
T Consensus        85 ~~~~~~~~~~~~d-~~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~~  130 (143)
T 4fo5_A           85 KIDKLDLSTQFHE-GLGKESELYKKYDLRKGFKNFLIND---EGVIIAAN  130 (143)
T ss_dssp             HHHTCCGGGEEEC-TTGGGSHHHHHTTGGGCCCEEEECT---TSBEEEES
T ss_pred             HHhCCCCceeeec-ccccchHHHHHcCCCCCCcEEEECC---CCEEEEcc
Confidence            9755  4 22222 1222268999999999999999999   99998764

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.86  E-value=2.5e-21  Score=167.11  Aligned_cols=120  Identities=18%  Similarity=0.344  Sum_probs=106.2

Q ss_pred             ccccccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHH
Q 014225           36 SLLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNY  114 (428)
Q Consensus        36 ~~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~  114 (428)
                      ...|..+|+| |.+.+|+++++++++||+++|+||++||++|+.++|.|++++++|++.+  +++++|++|...+.++++
T Consensus         9 ~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~--~~vv~i~~d~~~~~~~~~   86 (152)
T 2lrt_A            9 KIKEASIIDIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQG--FEIYQISLDGDEHFWKTS   86 (152)
T ss_dssp             SSCTTCSCCCCEEBTTSCEECTTTGGGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT--EEEEEEECSCCHHHHHHH
T ss_pred             hccCCCCCCeEEEcCCCCEEeHHHhCCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCC--eEEEEEEccCCHHHHHHH
Confidence            3468899999 9999999999999999999999999999999999999999999999887  999999999999889999


Q ss_pred             HhcCCCceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          115 RACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       115 ~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      ..+++|..+...+.. ...+.+.|++.++|+++|||+   +|+++..
T Consensus        87 ~~~~~~~~~~d~~~~-~~~~~~~~~v~~~P~~~lid~---~G~i~~~  129 (152)
T 2lrt_A           87 ADNLPWVCVRDANGA-YSSYISLYNVTNLPSVFLVNR---NNELSAR  129 (152)
T ss_dssp             HTTCSSEEEECSSGG-GCHHHHHHTCCSCSEEEEEET---TTEEEEE
T ss_pred             HhCCCceEEECCCCc-chHHHHHcCcccCceEEEECC---CCeEEEe
Confidence            888887655442221 135899999999999999999   9999866

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.86  E-value=2.3e-21  Score=166.72  Aligned_cols=142  Identities=20%  Similarity=0.261  Sum_probs=121.0

Q ss_pred             hhccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC-
Q 014225          201 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-  278 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~-  278 (428)
                      ++|.++|+|.+ +.+|+ .+++++++||+++|+||++||++|+.+.|.|.++++++++.         ++.|++|+.+. 
T Consensus         3 ~~G~~~p~~~l~~~~g~-~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~---------~~~vv~v~~~~~   72 (153)
T 2l5o_A            3 LDSKTAPAFSLPDLHGK-TVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNK---------NFQVLAVAQPID   72 (153)
T ss_dssp             -CCTTCCSCEEECTTSC-EEEHHHHTTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGT---------TEEEEEEECTTS
T ss_pred             CCCCCCCCcEeecCCCC-CccHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccC---------CeEEEEEecCCC
Confidence            46999999999 99999 99999999999999999999999999999999999999876         79999999863 


Q ss_pred             CHHHHHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHH
Q 014225          279 DQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQME  358 (428)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~  358 (428)
                      +.+.+++|....+ +.+++..|....+.+.|++.++|+++|||++|+++.+..+.              ...++|.+.|+
T Consensus        73 ~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~--------------~~~~~l~~~l~  137 (153)
T 2l5o_A           73 PIESVRQYVKDYG-LPFTVMYDADKAVGQAFGTQVYPTSVLIGKKGEILKTYVGE--------------PDFGKLYQEID  137 (153)
T ss_dssp             CHHHHHHHHHHTT-CCSEEEECSSCHHHHHHTCCSSSEEEEECSSSCCCEEEESS--------------CCHHHHHHHHH
T ss_pred             CHHHHHHHHHHcC-CCceEEcCchHHHHHHcCCCccCeEEEECCCCcEEEEEcCC--------------CCHHHHHHHHH
Confidence            5678888888776 56777777788999999999999999999999998764321              12367888888


Q ss_pred             HHHhcCCCC
Q 014225          359 EEAKNLPRS  367 (428)
Q Consensus       359 ~~~~~~~~~  367 (428)
                      +++.....+
T Consensus       138 ~ll~~~~~~  146 (153)
T 2l5o_A          138 TAWRNSDAE  146 (153)
T ss_dssp             HHHHCCSSC
T ss_pred             HHHHhhhhc
Confidence            888865443

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.85  E-value=4.3e-21  Score=170.58  Aligned_cols=136  Identities=12%  Similarity=0.082  Sum_probs=117.0

Q ss_pred             hccCCCCccc-CC--CCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCE------EEE
Q 014225          202 LTNHDRGYLL-GH--PPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDF------EVV  272 (428)
Q Consensus       202 ~g~~~p~f~l-~~--~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~------~iv  272 (428)
                      .|.++|+|.+ +.  +|+ .+++++++||++||+||++||++|+.++|.|.+++++|+++         ++      .|+
T Consensus        33 ~g~~~p~f~l~~~~~~g~-~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~---------~~~~~~~v~~v  102 (183)
T 3lwa_A           33 DRQQLPDIGGDSLMEEGT-QINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAA---------GNGDTPGGTVL  102 (183)
T ss_dssp             GCCCCCCCEEEBSSSTTC-EEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHC---------C---CCSEEEE
T ss_pred             cCCCCCceeccccccCCc-EecHHHhCCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhc---------CCCccCCcEEE
Confidence            4889999999 99  999 99999999999999999999999999999999999999876         56      999


Q ss_pred             EEEcCC-CHHHHHHHHhcCCccccccCCcchhHHHHhc---CcCccceEEEECCCCcEEeccccchhhcccccCCCCChH
Q 014225          273 FVSTDR-DQTSFESYFGTMPWLALPFGDPTIKELTKYF---DVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEA  348 (428)
Q Consensus       273 ~is~d~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~  348 (428)
                      +|++|. +.+.+++|+.+++ +.+|+..|....+.+.|   ++.++|+++|||++|+++.+..+.           .+  
T Consensus       103 ~v~~d~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~-----------~~--  168 (183)
T 3lwa_A          103 GINVRDYSRDIAQDFVTDNG-LDYPSIYDPPFMTAASLGGVPASVIPTTIVLDKQHRPAAVFLRE-----------VT--  168 (183)
T ss_dssp             EEECSCCCHHHHHHHHHHTT-CCSCEEECTTCGGGGGTTTCCTTCCSEEEEECTTSCEEEEECSC-----------CC--
T ss_pred             EEECCCCCHHHHHHHHHHcC-CCccEEECCcchHHHHhccCCCCCCCeEEEECCCCcEEEEEcCC-----------CC--
Confidence            999998 7899999999887 56888788778888877   489999999999999999875431           22  


Q ss_pred             HHHHHHHHHHHHHh
Q 014225          349 KLEFLEKQMEEEAK  362 (428)
Q Consensus       349 ~~~~L~~~l~~~~~  362 (428)
                       .++|.+.|+++++
T Consensus       169 -~~~l~~~l~~ll~  181 (183)
T 3lwa_A          169 -SKDVLDVALPLVD  181 (183)
T ss_dssp             -HHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHh
Confidence             3566777777765

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.85  E-value=3.6e-21  Score=165.50  Aligned_cols=136  Identities=16%  Similarity=0.245  Sum_probs=108.2

Q ss_pred             cCCCCcccCCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHH
Q 014225          204 NHDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSF  283 (428)
Q Consensus       204 ~~~p~f~l~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~  283 (428)
                      .++|+|.+..+|+ .+++++++||++||+||++||++|+.++|.|.+++++|++.         ++.|++|++| +.+.+
T Consensus         3 ~pa~~~~~~~~G~-~~~l~~~~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~---------~v~vv~v~~d-~~~~~   71 (151)
T 3raz_A            3 LSADELAGWKDNT-PQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKG---------SVDMVGIALD-TSDNI   71 (151)
T ss_dssp             ----CEEETTTCC-EECGGGCCSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTT---------TEEEEEEESS-CHHHH
T ss_pred             CCcchhhcccCCC-EecHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccC---------CeEEEEEECC-ChHHH
Confidence            3455565568999 99999999999999999999999999999999999999655         7999999998 56788


Q ss_pred             HHHHhcCCccccccCC---cchhHHHHhcC--cCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHH
Q 014225          284 ESYFGTMPWLALPFGD---PTIKELTKYFD--VQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQME  358 (428)
Q Consensus       284 ~~~~~~~~~~~~~~~~---d~~~~~~~~~~--v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~  358 (428)
                      ++|+++.+ +.+|...   +....+.+.|+  +.++|+++|||++|+++.+..+.           .+   .++|.+.|+
T Consensus        72 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~-----------~~---~~~l~~~l~  136 (151)
T 3raz_A           72 GNFLKQTP-VSYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQTITGE-----------VN---EKSLTDAVK  136 (151)
T ss_dssp             HHHHHHSC-CSSCEEEECCSCHHHHHHTTTCCSCCSSEEEEEETTTTEEEECCSC-----------CC---HHHHHHHHH
T ss_pred             HHHHHHcC-CCCceEecCccchHHHHHHhCCccCCCCEEEEECCCCcEEEEECCC-----------CC---HHHHHHHHH
Confidence            99999876 5566543   34678999999  99999999999999999885432           22   356677777


Q ss_pred             HHHhcCC
Q 014225          359 EEAKNLP  365 (428)
Q Consensus       359 ~~~~~~~  365 (428)
                      ++.++.+
T Consensus       137 ~l~~~~~  143 (151)
T 3raz_A          137 LAHSKCR  143 (151)
T ss_dssp             HHHTC--
T ss_pred             HHHHHhh
Confidence            7766543

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=99.85  E-value=1.2e-21  Score=173.91  Aligned_cols=136  Identities=18%  Similarity=0.123  Sum_probs=115.6

Q ss_pred             ccCCCCccc-CCCCCceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCH
Q 014225          203 TNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ  280 (428)
Q Consensus       203 g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~  280 (428)
                      |.++|+|++ +.+|+ .+++++++||++||+|| ++||++|..++|.|++++++|+++         +++|++|++| +.
T Consensus        28 g~~aP~f~l~~~~G~-~v~l~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~---------~~~vv~Vs~D-~~   96 (179)
T 3ixr_A           28 NHSLLNHPLMLSGST-CKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQI---------NATVLGVSRD-SV   96 (179)
T ss_dssp             CHHHHHCCEEEGGGE-EECGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTT---------TEEEEEEESC-CH
T ss_pred             CCcCCCeeEECCCCC-EEeHHHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHC---------CCEEEEEcCC-CH
Confidence            444999999 99999 99999999999999999 899999999999999999999877         8999999998 56


Q ss_pred             HHHHHHHhcCCccccccCCcchhHHHHhcCcCc------------cceEEEECCCCcEEeccccchhhcccccCCCCChH
Q 014225          281 TSFESYFGTMPWLALPFGDPTIKELTKYFDVQG------------IPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEA  348 (428)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~------------~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~  348 (428)
                      +..++|.++.+ ++||++.|....+++.|++..            .|++||||++|+|++....           .....
T Consensus        97 ~~~~~~~~~~~-~~f~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~I~~~~~~-----------~~~~~  164 (179)
T 3ixr_A           97 KSHDSFCAKQG-FTFPLVSDSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIVEAWRQ-----------VKVPG  164 (179)
T ss_dssp             HHHHHHHHHHT-CCSCEEECTTCHHHHHTTCEEEECCC--CEEEECCEEEEECTTSBEEEEECS-----------CCSTT
T ss_pred             HHHHHHHHHcC-CceEEEECCchHHHHHcCCcccccccCcccCCcceEEEEECCCCEEEEEEcC-----------CCCCC
Confidence            77888888766 678888888899999999954            6899999999999987521           12344


Q ss_pred             HHHHHHHHHHHHH
Q 014225          349 KLEFLEKQMEEEA  361 (428)
Q Consensus       349 ~~~~L~~~l~~~~  361 (428)
                      .++++.+.|+++.
T Consensus       165 ~~~~il~~l~~l~  177 (179)
T 3ixr_A          165 HAEEVLNKLKAHA  177 (179)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            5677777777654

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.85  E-value=6.2e-21  Score=163.87  Aligned_cols=121  Identities=16%  Similarity=0.225  Sum_probs=105.4

Q ss_pred             cccccccCc-cccCCCCEEecc--cCCCCEEEEEEecCCChh--hhhhHHHHHHHHHHH-hcCCCcEEEEEEecCCChHH
Q 014225           37 LLASKDRDY-LLNQHGTQVKVS--DLEGKVTALYFSANWYPP--CGNFTGVLVDVYEEL-RNNGSDFEVVFVSSDEDLNA  110 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~--~~~gk~vlv~F~a~wC~~--C~~~~p~l~~l~~~~-~~~~~~~~ii~vs~D~~~~~  110 (428)
                      .+|..+|+| |.+.+|++++++  +++||+++|+||++||++  |+.++|.|++++++| ++.+  +++++|++|.+.+.
T Consensus         6 ~~G~~~p~f~l~~~~g~~~~l~~~~~~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~--~~~v~v~~d~~~~~   83 (150)
T 3fw2_A            6 EIGKYAPFFSLPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKY--IGMLGISLDVDKQQ   83 (150)
T ss_dssp             STTSBCCCCCEEBTTCCEECTTSTTTTTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSS--EEEEEEECCSCHHH
T ss_pred             cCCCcCCccEeECCCCCEEecchhhhCCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCC--eEEEEEEcCCCHHH
Confidence            369999999 999999999999  999999999999999999  999999999999999 7766  99999999999899


Q ss_pred             HHHHHhcCCCceeccCCh-HHHHHHHhhcCCCCCceEEEEcCCCCCCCccccc
Q 014225          111 FNNYRACMPWLAVPYSDL-ETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       111 ~~~~~~~~~~~~~~~~d~-~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~~  162 (428)
                      +++++++++.....+.+. .....+.+.|++.++|+++|||+   +|+++...
T Consensus        84 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~~  133 (150)
T 3fw2_A           84 WKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYKIPANILLSS---DGKILAKN  133 (150)
T ss_dssp             HHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCSSSEEEEECT---TSBEEEES
T ss_pred             HHHHHHHhCCCceEEEcCcccchHHHHHcCCCccCeEEEECC---CCEEEEcc
Confidence            999999766422222232 11268999999999999999999   99998764

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.85  E-value=3.2e-21  Score=168.25  Aligned_cols=116  Identities=16%  Similarity=0.283  Sum_probs=107.5

Q ss_pred             hhhccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC-
Q 014225          200 NLLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD-  277 (428)
Q Consensus       200 ~~~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d-  277 (428)
                      ..+|.++|+|.+ +.+|+ .+++++++||++||+||++||++|+.++|.|.+++++++           ++.|++|++| 
T Consensus        11 ~~~g~~~p~~~l~~~~g~-~~~l~~~~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~-----------~v~vv~i~~d~   78 (165)
T 3ha9_A           11 EEVLEREASFSLTTIDGE-VISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR-----------EISVIAIDFWT   78 (165)
T ss_dssp             HHHHHHHHCCCEEBTTSC-EECGGGCCSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT-----------TEEEEEEECCS
T ss_pred             ccccCcCCCCEeecCCCC-EeeHHHhCCCEEEEEEECCCCcchhhhHHHHHHHHHHcC-----------CcEEEEEEecc
Confidence            346889999999 99999 999999999999999999999999999999999999886           4899999999 


Q ss_pred             -----------------CCHHHHHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEe
Q 014225          278 -----------------RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVT  328 (428)
Q Consensus       278 -----------------~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~  328 (428)
                                       .+.+.+++|.+.+++.++|+..| ...+.+.|++.++|+++|||++|+++.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~v~~~P~~~lid~~G~i~~  145 (165)
T 3ha9_A           79 AEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMVMD-DGSLVEKFNVRSIDYIVIMDKSSNVLY  145 (165)
T ss_dssp             HHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTSEEEEC-CSHHHHHTTCCSSSEEEEEETTCCEEE
T ss_pred             cccccccccccccCCCCCCHHHHHHHHHHcCCCCeeEEeC-hHHHHHHhCCCCceEEEEEcCCCcEEE
Confidence                             78899999999888558888888 889999999999999999999999998

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.84  E-value=7.4e-21  Score=169.41  Aligned_cols=140  Identities=19%  Similarity=0.312  Sum_probs=117.9

Q ss_pred             hccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC-
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD-  279 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~-  279 (428)
                      .|.++|+|.+ +.+|+ .+++++++||+++|+||++||++|+.++|.|++++++|++.         ++.|++|++|.+ 
T Consensus        36 ~g~~~p~f~l~~~~G~-~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~---------~~~vv~v~~d~~~  105 (186)
T 1jfu_A           36 APLKLPDLAFEDADGK-PKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGP---------NFEVVAINIDTRD  105 (186)
T ss_dssp             SCCBCCCCEEECTTSC-EEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBT---------TEEEEEEECCCSC
T ss_pred             CCCcCCCcEeEcCCCC-EeeHHHcCCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccC---------CcEEEEEECCCCC
Confidence            4889999999 99999 99999999999999999999999999999999999999755         799999999964 


Q ss_pred             HHHHHHHHhcCCccccccCCcchhHHHHhcCcC----ccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHH
Q 014225          280 QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ----GIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEK  355 (428)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~----~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~  355 (428)
                      .+.+++|..+++...+|+..|....+.+.|++.    ++|+++|||++|+|+.+..+..         +.+   .++|.+
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~~~g~~---------~~~---~~~l~~  173 (186)
T 1jfu_A          106 PEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGPA---------EWA---SEDALK  173 (186)
T ss_dssp             TTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEEEESCC---------CTT---SHHHHH
T ss_pred             HHHHHHHHHHcCCCCCceEECCcchHHHHhccccccCCCCEEEEECCCCCEEEEEecCC---------ccC---HHHHHH
Confidence            567888988888657888888888999999985    8999999999999998753311         111   256677


Q ss_pred             HHHHHHhc
Q 014225          356 QMEEEAKN  363 (428)
Q Consensus       356 ~l~~~~~~  363 (428)
                      .|++++++
T Consensus       174 ~l~~ll~~  181 (186)
T 1jfu_A          174 LIRAATGK  181 (186)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHhcc
Confidence            77777654

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.84  E-value=7.9e-21  Score=170.57  Aligned_cols=147  Identities=13%  Similarity=0.165  Sum_probs=121.7

Q ss_pred             hccCCCCccc--CCCCCceecccccCCc-EEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC-
Q 014225          202 LTNHDRGYLL--GHPPDEKVPVSSLVGK-TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD-  277 (428)
Q Consensus       202 ~g~~~p~f~l--~~~g~~~v~l~~~~gk-~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d-  277 (428)
                      +|.++|+|.+  +.+|+ .+++++++|| ++||+||++||++|+.++|.|.+++++|+++         ++.|++|++| 
T Consensus        20 ~g~~~p~f~l~~~~~G~-~~~l~~~~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~---------~v~vv~v~~d~   89 (196)
T 2ywi_A           20 LGKQAPPFALTNVIDGN-VVRLEDVKSDAATVIMFICNHCPFVKHVQHELVRLANDYMPK---------GVSFVAINSND   89 (196)
T ss_dssp             TTCBCCCCEEEETTTCC-EEEHHHHCCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGG---------TCEEEEEECSC
T ss_pred             cCCcCCceeeeecCCCC-EEeHHHhCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhC---------CcEEEEEECCc
Confidence            5889999998  68999 9999999998 5999999999999999999999999999876         7999999997 


Q ss_pred             ------CCHHHHHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEeccccchhh--cccccCCCCChHH
Q 014225          278 ------RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLIN--LYQENAYPFTEAK  349 (428)
Q Consensus       278 ------~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~--~~g~~~~p~~~~~  349 (428)
                            .+.+.+++|+..++ +++|+..|....+++.|++.++|+++|||++|++++++..+...  ..|    +.+   
T Consensus        90 ~~~~~~d~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~g----~~~---  161 (196)
T 2ywi_A           90 AEQYPEDSPENMKKVAEELG-YPFPYLYDETQEVAKAYDAACTPDFYIFDRDLKCVYRGQLDDSRPNNGI----PVT---  161 (196)
T ss_dssp             TTTCGGGSHHHHHHHHHHHT-CCSCEEECSSCHHHHHHTCCEESEEEEEETTCBEEEEECSSSCCTTTCC----CCC---
T ss_pred             cccccccCHHHHHHHHHHcC-CCceEEECCchHHHHHhCCCCCCeEEEEcCCCeEEEccccCcccccccC----ccC---
Confidence                  46788999998877 57888888888999999999999999999999999884322110  011    112   


Q ss_pred             HHHHHHHHHHHHhcCCC
Q 014225          350 LEFLEKQMEEEAKNLPR  366 (428)
Q Consensus       350 ~~~L~~~l~~~~~~~~~  366 (428)
                      .++|.+.|++++++.+.
T Consensus       162 ~~~l~~~i~~ll~~~~~  178 (196)
T 2ywi_A          162 GESIRAALDALLEGRPV  178 (196)
T ss_dssp             CHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHcCCCC
Confidence            36778888888876544

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=99.84  E-value=3.8e-21  Score=171.85  Aligned_cols=141  Identities=12%  Similarity=0.156  Sum_probs=115.9

Q ss_pred             hhccCCCCccc-CC-CC--CceecccccCCcEEEEEEec-cCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEE
Q 014225          201 LLTNHDRGYLL-GH-PP--DEKVPVSSLVGKTVGLYFSA-RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS  275 (428)
Q Consensus       201 ~~g~~~p~f~l-~~-~g--~~~v~l~~~~gk~vll~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is  275 (428)
                      .+|.++|+|++ +. +|  + .+++++++||++||+||+ +|||+|..++|.|++++++|+++         +++||+|+
T Consensus         2 ~~G~~aP~f~l~~~~~G~~~-~v~l~~~~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~---------~v~vv~Is   71 (186)
T 1n8j_A            2 LINTKIKPFKNQAFKNGEFI-EVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKL---------GVDVYSVS   71 (186)
T ss_dssp             CTTCBCCCCEEEEEETTEEE-EEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHT---------TEEEEEEE
T ss_pred             CCCCcCCCcEeecccCCcce-EEEHHHHCCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHC---------CCEEEEEE
Confidence            36899999999 88 58  8 999999999999999995 99999999999999999999876         79999999


Q ss_pred             cCCCHHHHHHHHhcCC---ccccccCCcchhHHHHhcCcC------ccceEEEECCCCcEEeccccchhhcccccCCCCC
Q 014225          276 TDRDQTSFESYFGTMP---WLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFT  346 (428)
Q Consensus       276 ~d~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~  346 (428)
                      +| +.+..++|.++++   .++||++.|....+++.||+.      .+|++||||++|+|++++.+..       .   .
T Consensus        72 ~d-~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~i~~~~~~~~-------~---~  140 (186)
T 1n8j_A           72 TD-THFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAE-------G---I  140 (186)
T ss_dssp             SS-CHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECT-------T---B
T ss_pred             CC-CHHHHHHHHHHcCcccCCceeEEECCchHHHHHhCCccCCCCceeeEEEEECCCCeEEEEEecCC-------C---C
Confidence            98 5677888888772   367888888889999999997      3799999999999999864321       0   0


Q ss_pred             hHHHHHHHHHHHHHHh
Q 014225          347 EAKLEFLEKQMEEEAK  362 (428)
Q Consensus       347 ~~~~~~L~~~l~~~~~  362 (428)
                      ....++|.+.|+++..
T Consensus       141 ~~~~~~l~~~l~~l~~  156 (186)
T 1n8j_A          141 GRDASDLLRKIKAAQY  156 (186)
T ss_dssp             CCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            1124566666766543

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=99.84  E-value=2.8e-21  Score=172.75  Aligned_cols=138  Identities=13%  Similarity=0.145  Sum_probs=109.1

Q ss_pred             hccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC---
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD---  277 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d---  277 (428)
                      .+.++|+|++ +.+|+ .+++++++||+|||+||++|||+|..++|.|.+++++|+++         +++||+|++|   
T Consensus        22 ~~~~~p~f~l~d~~G~-~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~---------~~~vi~is~d~~~   91 (187)
T 3dwv_A           22 AASSIFDFEVLDADHK-PYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQ---------GFTVLAFPSNQFG   91 (187)
T ss_dssp             TCCSGGGSCCBBTTSC-BCCGGGGTTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGG---------TCEEEEEEBCCCS
T ss_pred             CCCccCCeEEEcCCCC-EeeHHHhCCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhC---------CeEEEEEECcccC
Confidence            3678999999 99999 99999999999999999999999999999999999999877         7999999998   


Q ss_pred             ----CCHHHHHHHHhcCCccccccCC--cchhH----HH--------HhcCcCccc---eEEEECCCCcEEeccccchhh
Q 014225          278 ----RDQTSFESYFGTMPWLALPFGD--PTIKE----LT--------KYFDVQGIP---CLVIIGPEGKTVTKQGRNLIN  336 (428)
Q Consensus       278 ----~~~~~~~~~~~~~~~~~~~~~~--d~~~~----~~--------~~~~v~~~P---~~~lid~~G~i~~~~~~~~~~  336 (428)
                          .+.+++++|++..-.++||+..  |....    +.        ..|++..+|   ++||||++|+|+.+..+.   
T Consensus        92 ~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~~~g~---  168 (187)
T 3dwv_A           92 GQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFSPG---  168 (187)
T ss_dssp             SCSSSBTTHHHHSCCBCCCCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEEECTT---
T ss_pred             CCCCCCHHHHHHHHHhccCCCCceeeccccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEEECCC---
Confidence                3567899998854336677664  22222    11        445677888   999999999999985432   


Q ss_pred             cccccCCCCChHHHHHHHHHHHHHHhc
Q 014225          337 LYQENAYPFTEAKLEFLEKQMEEEAKN  363 (428)
Q Consensus       337 ~~g~~~~p~~~~~~~~L~~~l~~~~~~  363 (428)
                              .+   .++|.+.|++++++
T Consensus       169 --------~~---~~~l~~~i~~lL~~  184 (187)
T 3dwv_A          169 --------AS---VKDIEEKLIPLLGS  184 (187)
T ss_dssp             --------CC---HHHHHHHHHHHC--
T ss_pred             --------CC---HHHHHHHHHHHHhc
Confidence                    12   24577777777653

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.84  E-value=8.8e-21  Score=163.27  Aligned_cols=120  Identities=19%  Similarity=0.315  Sum_probs=104.8

Q ss_pred             cccccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHH
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYR  115 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~  115 (428)
                      .+|..+|+| |.+.+|+++++++++||+++|+||++||++|+.++|.|+++++++++.+  +++++|++|.+.+.+++++
T Consensus         4 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~d~~~~~~~~~~   81 (152)
T 2lrn_A            4 ATGSVAPAITGIDLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKG--FTIYGVSTDRREEDWKKAI   81 (152)
T ss_dssp             CTTEECCCCEEECSSSCEEESGGGTTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTT--EEEEEEECCSCHHHHHHHH
T ss_pred             cCCCcCCCceeEcCCCCEEeHHHcCCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCC--eEEEEEEccCCHHHHHHHH
Confidence            368899999 9999999999999999999999999999999999999999999999876  9999999999999999999


Q ss_pred             hcCC--CceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCccccc
Q 014225          116 ACMP--WLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       116 ~~~~--~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~~  162 (428)
                      ++++  |..+.. .......+.+.|++.++|++++||+   +|+++...
T Consensus        82 ~~~~~~~~~~~d-~~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~~  126 (152)
T 2lrn_A           82 EEDKSYWNQVLL-QKDDVKDVLESYCIVGFPHIILVDP---EGKIVAKE  126 (152)
T ss_dssp             HHHTCCSEEEEE-CHHHHHHHHHHTTCCSSCEEEEECT---TSEEEEEC
T ss_pred             HHhCCCCeEEec-ccchhHHHHHHhCCCcCCeEEEECC---CCeEEEee
Confidence            8754  433322 1112378999999999999999999   99998764

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.84  E-value=1.3e-20  Score=166.66  Aligned_cols=117  Identities=16%  Similarity=0.181  Sum_probs=104.1

Q ss_pred             hhccCCCCccc-CCCC--CceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC
Q 014225          201 LLTNHDRGYLL-GHPP--DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD  277 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g--~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d  277 (428)
                      .+|.++|+|++ +.+|  . .+++++++||++||+||++||++|+.++|.|++++++             ++.|++|++|
T Consensus        31 ~~G~~~P~f~l~~~~g~~~-~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~-------------~v~vv~vs~~   96 (176)
T 3kh7_A           31 LIGKPFPAFDLPSVQDPAR-RLTEADLKGKPALVNVWGTWCPSCRVEHPELTRLAEQ-------------GVVIYGINYK   96 (176)
T ss_dssp             TTTSBCCCCEEEBSSCTTS-EEEGGGGCSSCEEEEEECTTCHHHHHHHHHHHHHHHT-------------TCEEEEEEES
T ss_pred             ccCCcCCCcEecccCCCCc-eecHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHC-------------CCEEEEEeCC
Confidence            46999999999 9998  7 8999999999999999999999999999999988764             3899999999


Q ss_pred             CCHHHHHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEeccc
Q 014225          278 RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~  331 (428)
                      .+.+.+++|+.+.++....+..|....+++.|++.++|++||||++|+|+++..
T Consensus        97 d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~  150 (176)
T 3kh7_A           97 DDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVYGAPETYLIDKQGIIRHKIV  150 (176)
T ss_dssp             CCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCCSSCEEEEECTTCBEEEEEE
T ss_pred             CCHHHHHHHHHHcCCCCceEEECCcchHHHHcCCCCCCeEEEECCCCeEEEEEc
Confidence            899999999998874333346677889999999999999999999999998753

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=99.84  E-value=6.2e-21  Score=175.05  Aligned_cols=141  Identities=16%  Similarity=0.197  Sum_probs=117.4

Q ss_pred             hhccCCCCccc-CC--CC--Cceeccccc-CCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEE
Q 014225          201 LLTNHDRGYLL-GH--PP--DEKVPVSSL-VGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVF  273 (428)
Q Consensus       201 ~~g~~~p~f~l-~~--~g--~~~v~l~~~-~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~  273 (428)
                      .+|.++|+|++ +.  +|  + .++++++ +||+|||+|| ++|||+|+.++|.|.+++++|+++         +++||+
T Consensus        26 ~~G~~aP~F~l~~~~~~G~~~-~v~L~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~---------~v~vv~   95 (221)
T 2c0d_A           26 LVTKKAYNFTAQGLNKNNEII-NVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENK---------NVELLG   95 (221)
T ss_dssp             CTTSBCCCCEEEEECTTSCEE-EEEGGGGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHT---------TEEEEE
T ss_pred             CCCCCCCCeEEeccccCCCcc-EEeHHHHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHC---------CCEEEE
Confidence            46999999999 88  89  8 9999999 9999999999 999999999999999999999876         799999


Q ss_pred             EEcCCCHHHHHHHHhcCC------ccccccCCcchhHHHHhcCc-----CccceEEEECCCCcEEeccccchhhcccccC
Q 014225          274 VSTDRDQTSFESYFGTMP------WLALPFGDPTIKELTKYFDV-----QGIPCLVIIGPEGKTVTKQGRNLINLYQENA  342 (428)
Q Consensus       274 is~d~~~~~~~~~~~~~~------~~~~~~~~d~~~~~~~~~~v-----~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~  342 (428)
                      |++| +.+..++|.+...      .++||++.|....+++.|++     ..+|++||||++|+|+++..+..       .
T Consensus        96 Is~D-~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~g~~~P~~~lID~~G~I~~~~~g~~-------~  167 (221)
T 2c0d_A           96 ISVD-SVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNVLYDNSFALRGLFIIDKNGCVRHQTVNDL-------P  167 (221)
T ss_dssp             EESS-CHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECEEEEEECTTSBEEEEEEECT-------T
T ss_pred             EeCC-CHHHHHHHHHHhhhhcCccCCceEEEECCchHHHHHcCCcccCCCccceEEEECCCCeEEEEEecCC-------C
Confidence            9998 5667888888761      46788888888899999999     47999999999999999853321       1


Q ss_pred             CCCChHHHHHHHHHHHHHHh
Q 014225          343 YPFTEAKLEFLEKQMEEEAK  362 (428)
Q Consensus       343 ~p~~~~~~~~L~~~l~~~~~  362 (428)
                         .....+++.+.|+++..
T Consensus       168 ---~~~~~~ell~~l~~L~~  184 (221)
T 2c0d_A          168 ---IGRNVQEVLRTIDSIIH  184 (221)
T ss_dssp             ---CCCCHHHHHHHHHHHHH
T ss_pred             ---CCCCHHHHHHHHHHHhh
Confidence               11234666666766553

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=99.84  E-value=1.9e-20  Score=162.86  Aligned_cols=138  Identities=17%  Similarity=0.336  Sum_probs=113.1

Q ss_pred             CCCCccc-CCCCCceecccccCCcEEEEEEeccCChh-HHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC---C
Q 014225          205 HDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIP-CEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR---D  279 (428)
Q Consensus       205 ~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~-C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~---~  279 (428)
                      .+|+|++ +.+|+ .+++++++||++||+||++||++ |..++|.|++++++|++..     ...++++++|++|.   +
T Consensus         2 ~ap~f~l~~~~G~-~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~-----~~~~~~vv~vs~d~~~d~   75 (164)
T 2ggt_A            2 LGGPFSLTTHTGE-RKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSIT-----TLPDLTPLFISIDPERDT   75 (164)
T ss_dssp             CCCCCEEEETTSC-EEEGGGGTTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSS-----SSCCEEEEEEESCTTTCC
T ss_pred             CCCCeEEEeCCCC-EEeHHHcCCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhcc-----CCCcEEEEEEEeCCCCCC
Confidence            4799999 99999 99999999999999999999998 9999999999999998610     01279999999986   3


Q ss_pred             HHHHHHHHhcCCccccccC---CcchhHHHHhcCcCccc---------------eEEEECCCCcEEeccccchhhccccc
Q 014225          280 QTSFESYFGTMPWLALPFG---DPTIKELTKYFDVQGIP---------------CLVIIGPEGKTVTKQGRNLINLYQEN  341 (428)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~v~~~P---------------~~~lid~~G~i~~~~~~~~~~~~g~~  341 (428)
                      .+.+++|.++++ .+++++   .|....+++.|++..+|               +++|||++|+++.+..+.        
T Consensus        76 ~~~~~~~~~~~~-~~~~~l~~~~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~--------  146 (164)
T 2ggt_A           76 KEAIANYVKEFS-PKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQN--------  146 (164)
T ss_dssp             HHHHHHHHHTTC-SSCEEEECCHHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETT--------
T ss_pred             HHHHHHHHHHcC-CCeEEEeCCHHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCC--------
Confidence            678999998776 455554   35567799999999999               899999999999985431        


Q ss_pred             CCCCChHHHHHHHHHHHHHHhc
Q 014225          342 AYPFTEAKLEFLEKQMEEEAKN  363 (428)
Q Consensus       342 ~~p~~~~~~~~L~~~l~~~~~~  363 (428)
                         .+   .++|.+.|+++++.
T Consensus       147 ---~~---~~~l~~~l~~ll~~  162 (164)
T 2ggt_A          147 ---KR---KGEIAASIATHMRP  162 (164)
T ss_dssp             ---CC---HHHHHHHHHHHHGG
T ss_pred             ---CC---HHHHHHHHHHHHHh
Confidence               12   26677788877764

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.84  E-value=9.7e-21  Score=158.79  Aligned_cols=113  Identities=18%  Similarity=0.248  Sum_probs=104.7

Q ss_pred             ccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHH
Q 014225          203 TNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQT  281 (428)
Q Consensus       203 g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~  281 (428)
                      |.++|+|.+ +.+|+ .+++++++||+++|+||++||++|+.+.|.|.+++++++           ++.+++|++|.+.+
T Consensus         2 ~~~~p~~~~~~~~g~-~~~l~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-----------~~~~~~v~~~~~~~   69 (136)
T 1zzo_A            2 VPAQLQFSAKTLDGH-DFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP-----------EVTFVGVAGLDQVP   69 (136)
T ss_dssp             CCGGGCCEEEBTTSC-EEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEECSSCHH
T ss_pred             CCCCCCcccccCCCC-EeeHHHhCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC-----------CeEEEEEeCCCCHH
Confidence            567899999 99999 999999999999999999999999999999999998875           48999999999999


Q ss_pred             HHHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEE
Q 014225          282 SFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV  327 (428)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~  327 (428)
                      .++++...++...+|+..|....+.+.|++.++|+++|||++|+++
T Consensus        70 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~~id~~g~i~  115 (136)
T 1zzo_A           70 AMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQPAYAFVDPHGNVD  115 (136)
T ss_dssp             HHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSSSEEEEECTTCCEE
T ss_pred             HHHHHHHHcCCCceEEEEcCCcHHHHHcCCCCCceEEEECCCCCEE
Confidence            9999999888558888888889999999999999999999999998

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.84  E-value=1.1e-20  Score=160.52  Aligned_cols=119  Identities=20%  Similarity=0.377  Sum_probs=107.8

Q ss_pred             hhccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC-
Q 014225          201 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-  278 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~-  278 (428)
                      .+|.++|+|.+ +.+|. .+++++ +||+++|+||++||++|+.++|.|.+++++++..         ++.+++|++|. 
T Consensus        10 ~~g~~~p~~~l~~~~g~-~~~l~~-~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~---------~~~~v~v~~d~~   78 (145)
T 3erw_A           10 KQPAVPAVFLMKTIEGE-DISIPN-KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSD---------SVKLVTVNLVNS   78 (145)
T ss_dssp             --CCSCCEEEEECTTSC-EEEESC-TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCS---------SEEEEEEECGGG
T ss_pred             cCCCcCCCceeecCCCC-EEeHHH-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCC---------CEEEEEEEccCC
Confidence            46999999999 99999 999999 9999999999999999999999999999998754         79999999986 


Q ss_pred             --CHHHHHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEeccc
Q 014225          279 --DQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       279 --~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~  331 (428)
                        +.+.+++|....+ +.+|+..|....+++.|++.++|+++|||++|+++.+..
T Consensus        79 ~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~  132 (145)
T 3erw_A           79 EQNQQVVEDFIKANK-LTFPIVLDSKGELMKEYHIITIPTSFLLNEKGEIEKTKI  132 (145)
T ss_dssp             SSCHHHHHHHHHHTT-CCSCEEECSSSHHHHHTTCCEESEEEEECTTCCEEEEEE
T ss_pred             cCCHHHHHHHHHHcC-CceeEEEcCchhHHHhcCcCccCeEEEEcCCCcEEEEEc
Confidence              7889999998876 578888888889999999999999999999999998743

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.84  E-value=1.8e-20  Score=157.09  Aligned_cols=116  Identities=24%  Similarity=0.401  Sum_probs=105.0

Q ss_pred             CCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEE-----cCC
Q 014225          205 HDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS-----TDR  278 (428)
Q Consensus       205 ~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is-----~d~  278 (428)
                      ++|+|.+ +.+|+ .+++++++||+++|+||++||++|+.++|.|.++++++..          ++.+++|.     .+.
T Consensus         1 ~~p~f~l~~~~g~-~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~v~i~~~~~~~~~   69 (138)
T 4evm_A            1 EVADFELMGVDGK-TYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGD----------DYVVLTVVSPGHKGEQ   69 (138)
T ss_dssp             CCCCCEEEBTTSC-EEEGGGGTTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTT----------TEEEEEEECTTSTTCC
T ss_pred             CCCcceeECCCCC-EEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCC----------CcEEEEEEcCCCCchh
Confidence            4799999 99999 9999999999999999999999999999999999988543          58999994     455


Q ss_pred             CHHHHHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEeccc
Q 014225          279 DQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~  331 (428)
                      +.+.+++++...++..+++..|....+.+.|++.++|+++|||++|+++.+..
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~  122 (138)
T 4evm_A           70 SEADFKNWYKGLDYKNLPVLVDPSGKLLETYGVRSYPTQAFIDKEGKLVKTHP  122 (138)
T ss_dssp             CHHHHHHHHTTCCCTTCCEEECTTCHHHHHTTCCSSSEEEEECTTCCEEEEEE
T ss_pred             hHHHHHHHHhhcCCCCeeEEECcchHHHHHcCcccCCeEEEECCCCcEEEeec
Confidence            78899999999987789998888899999999999999999999999998754

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.84  E-value=1.4e-20  Score=160.33  Aligned_cols=136  Identities=17%  Similarity=0.175  Sum_probs=116.5

Q ss_pred             hccCCCCccc---CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC
Q 014225          202 LTNHDRGYLL---GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR  278 (428)
Q Consensus       202 ~g~~~p~f~l---~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~  278 (428)
                      +|.++|+|.+   +.+|+ .+++++++||+++|+||++||++|+.+.|.|.+++++++++          +.+++|++|.
T Consensus         3 ~g~~~P~f~~~~~~~~g~-~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~----------~~~~~v~~~~   71 (148)
T 2b5x_A            3 LRQPMPELTGEKAWLNGE-VTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ----------LNVVAVHMPR   71 (148)
T ss_dssp             TTCBCCCCCCCSEEESCC-CCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT----------SEEEEEECCC
T ss_pred             CCCCCCCCccccccccCc-ccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCC----------cEEEEEEcCC
Confidence            5889999987   57899 99999999999999999999999999999999999998743          8999999986


Q ss_pred             -----CHHHHHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHH
Q 014225          279 -----DQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFL  353 (428)
Q Consensus       279 -----~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L  353 (428)
                           +.+.+++++.+.+ +.+|+..|....+++.|++.++|+++|||++|+++.+..+.           .+   .++|
T Consensus        72 ~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~-----------~~---~~~l  136 (148)
T 2b5x_A           72 SEDDLDPGKIKETAAEHD-ITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGG-----------SG---MKML  136 (148)
T ss_dssp             STTTSSHHHHHHHHHHTT-CCSCEEECSSCHHHHHTCCCCSSEEEEECTTCBEEEEEESC-----------ST---THHH
T ss_pred             CccccCHHHHHHHHHHcC-CCcceEECCchhHHHHhCCCCCCEEEEECCCCcEEEEecCC-----------CC---HHHH
Confidence                 6788999999887 57888888888999999999999999999999999874331           11   2566


Q ss_pred             HHHHHHHHhc
Q 014225          354 EKQMEEEAKN  363 (428)
Q Consensus       354 ~~~l~~~~~~  363 (428)
                      .+.|+++++.
T Consensus       137 ~~~l~~~l~~  146 (148)
T 2b5x_A          137 EKRVNRVLAE  146 (148)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHhc
Confidence            7777777653

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=99.84  E-value=5.9e-21  Score=165.75  Aligned_cols=120  Identities=13%  Similarity=0.179  Sum_probs=108.0

Q ss_pred             hhccCCCCccc-CCCCCceecccccCCc-EEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC
Q 014225          201 LLTNHDRGYLL-GHPPDEKVPVSSLVGK-TVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD  277 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g~~~v~l~~~~gk-~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d  277 (428)
                      .+|.++|+|++ +.+|+ .+++++++|| +++|+|| ++||++|..++|.|.+++++|++.         ++.|++|++|
T Consensus        10 ~~G~~~p~f~l~~~~G~-~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~---------~~~vv~is~d   79 (160)
T 1xvw_A           10 NVGATAPDFTLRDQNQQ-LVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFEND---------DSAALAISVG   79 (160)
T ss_dssp             CTTSBCCCCEEECTTSC-EEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSS---------SEEEEEEESC
T ss_pred             CCCCCCCCeEeEcCCCC-EEeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC---------CcEEEEEeCC
Confidence            46999999999 99999 9999999998 9999998 999999999999999999998755         7999999998


Q ss_pred             CCHHHHHHHHhcCCccccccCCcc--hhHHHHhcCcC----ccc--eEEEECCCCcEEecccc
Q 014225          278 RDQTSFESYFGTMPWLALPFGDPT--IKELTKYFDVQ----GIP--CLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~v~----~~P--~~~lid~~G~i~~~~~~  332 (428)
                       +.+.+++|.+++++ .+|+..|.  ...+.+.|++.    ++|  ++||||++|+|+.++.+
T Consensus        80 -~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~~~~~p~~~~~lid~~G~i~~~~~g  140 (160)
T 1xvw_A           80 -PPPTHKIWATQSGF-TFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMK  140 (160)
T ss_dssp             -CHHHHHHHHHHHTC-CSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEEEC
T ss_pred             -CHHHHHHHHHhcCC-CceEEecCCcChHHHHHcCCccccCCCeeeeEEEECCCCeEEEEEec
Confidence             67788999988774 78887775  78899999998    999  99999999999998543

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=99.84  E-value=1.1e-20  Score=169.44  Aligned_cols=140  Identities=16%  Similarity=0.191  Sum_probs=119.1

Q ss_pred             hccCCCCccc-CC--CC--Cceeccccc-CCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEE
Q 014225          202 LTNHDRGYLL-GH--PP--DEKVPVSSL-VGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV  274 (428)
Q Consensus       202 ~g~~~p~f~l-~~--~g--~~~v~l~~~-~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~i  274 (428)
                      +|.++|+|++ +.  +|  + .++++++ +||++||+|| ++||++|..++|.|.+++++|+++         +++||+|
T Consensus         2 ~G~~aP~f~l~~~~~~G~~~-~~~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~---------~v~vv~I   71 (192)
T 2h01_A            2 FQGQAPSFKAEAVFGDNTFG-EVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKER---------NVELLGC   71 (192)
T ss_dssp             CSSBCCCCEEEEECTTSCEE-EEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHT---------TEEEEEE
T ss_pred             CCCcCCCcEeEeeecCCcee-EEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC---------CCEEEEE
Confidence            5889999999 88  89  8 9999999 9999999999 999999999999999999999876         7999999


Q ss_pred             EcCCCHHHHHHHHhcCC------ccccccCCcchhHHHHhcCcC-----ccceEEEECCCCcEEeccccchhhcccccCC
Q 014225          275 STDRDQTSFESYFGTMP------WLALPFGDPTIKELTKYFDVQ-----GIPCLVIIGPEGKTVTKQGRNLINLYQENAY  343 (428)
Q Consensus       275 s~d~~~~~~~~~~~~~~------~~~~~~~~d~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~  343 (428)
                      ++| +.+..++|.+.+.      .++||+..|....+++.|++.     .+|++||||++|+|+++..+..         
T Consensus        72 s~d-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~g~~~P~~~liD~~G~i~~~~~g~~---------  141 (192)
T 2h01_A           72 SVD-SKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVALRAFVLIDKQGVVQHLLVNNL---------  141 (192)
T ss_dssp             ESS-CHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECCEEEEECTTSBEEEEEEGGG---------
T ss_pred             EeC-CHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHHHHhCCcCcCCceeeEEEEEcCCCEEEEEEeCCC---------
Confidence            998 5678888888762      477888888889999999999     8999999999999999854321         


Q ss_pred             CCChHHHHHHHHHHHHHHh
Q 014225          344 PFTEAKLEFLEKQMEEEAK  362 (428)
Q Consensus       344 p~~~~~~~~L~~~l~~~~~  362 (428)
                       ......++|.+.|+++..
T Consensus       142 -~~~~~~~~l~~~l~~l~~  159 (192)
T 2h01_A          142 -ALGRSVDEILRLIDALQH  159 (192)
T ss_dssp             -SSGGGHHHHHHHHHHHHH
T ss_pred             -CCCCCHHHHHHHHHHHhh
Confidence             112345677777776653

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=99.83  E-value=6.9e-21  Score=166.25  Aligned_cols=118  Identities=9%  Similarity=0.025  Sum_probs=103.9

Q ss_pred             hccCCCCccc-CCCCCceecccccCCcEEEEEEec-cCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSA-RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD  279 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~  279 (428)
                      +|.++|+|++ +.+|+ .+++++++||+++|+||+ +||++|..++|.|++++++|  .         +++|++|++| +
T Consensus        18 ~G~~~P~f~l~~~~G~-~v~l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~--~---------~v~vv~is~d-~   84 (163)
T 1psq_A           18 VGDKALDFSLTTTDLS-KKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL--D---------NTVVLTVSMD-L   84 (163)
T ss_dssp             TTSBCCCCEEECTTSC-EEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--T---------TEEEEEEESS-C
T ss_pred             CCCCCCCEEEEcCCCc-EeeHHHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc--C---------CcEEEEEECC-C
Confidence            5889999999 99999 999999999999999995 99999999999999999888  4         6999999998 5


Q ss_pred             HHHHHHHHhcCCccccccCCc-chhHHHHhcCcC----c--cceEEEECCCCcEEecccc
Q 014225          280 QTSFESYFGTMPWLALPFGDP-TIKELTKYFDVQ----G--IPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~v~----~--~P~~~lid~~G~i~~~~~~  332 (428)
                      .+..++|.++++.-+||+..| ....+++.|++.    +  .|++||||++|+|++++.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~g  144 (163)
T 1psq_A           85 PFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEYV  144 (163)
T ss_dssp             HHHHHHHHHHHTCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEEC
T ss_pred             HHHHHHHHHhcCCCCcEEecCCchhHHHHHhCCccccCCceEEEEEEEcCCCeEEEEEec
Confidence            677888888766327888888 788999999997    3  3999999999999998643

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.83  E-value=2.4e-20  Score=160.60  Aligned_cols=135  Identities=21%  Similarity=0.299  Sum_probs=115.8

Q ss_pred             hhccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEc--C
Q 014225          201 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST--D  277 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~--d  277 (428)
                      ..|.++|+|.+ +.+|+ .+++++++ |+++|+||++||++|+.++|.|.++++++  .          +.+++|++  +
T Consensus         6 ~~g~~~p~f~l~~~~g~-~~~l~~~~-k~vll~f~~~~C~~C~~~~~~l~~l~~~~--~----------v~~v~v~~d~~   71 (154)
T 3ia1_A            6 KPGEPLPDFLLLDPKGQ-PVTPATVS-KPAVIVFWASWCTVCKAEFPGLHRVAEET--G----------VPFYVISREPR   71 (154)
T ss_dssp             CSBEECCCCCEECTTSC-EECTTTSC-SSEEEEEECTTCHHHHHHHHHHHHHHHHH--C----------CCEEEEECCTT
T ss_pred             CCCCcCCceEEECCCCC-EechHHcC-CeEEEEEEcccChhHHHHHHHHHHHHHHc--C----------CeEEEEeCCCc
Confidence            35899999999 99999 99999999 99999999999999999999999999998  4          68999999  5


Q ss_pred             CCHHHHHHHHhcCCccccccCCc---chhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHH
Q 014225          278 RDQTSFESYFGTMPWLALPFGDP---TIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLE  354 (428)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~  354 (428)
                      .+.+.+++++++.+ +.+|+..|   ....+.+.|++.++|+++|||++|+++.+..+.           .+   .++|.
T Consensus        72 ~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~-----------~~---~~~l~  136 (154)
T 3ia1_A           72 DTREVVLEYMKTYP-RFIPLLASDRDRPHEVAARFKVLGQPWTFVVDREGKVVALFAGR-----------AG---REALL  136 (154)
T ss_dssp             CCHHHHHHHHTTCT-TEEECBCCSSCCHHHHHTTSSBCSSCEEEEECTTSEEEEEEESB-----------CC---HHHHH
T ss_pred             ccHHHHHHHHHHcC-CCcccccccccchHHHHHHhCCCcccEEEEECCCCCEEEEEcCC-----------CC---HHHHH
Confidence            68899999999988 47888776   789999999999999999999999999875431           12   35667


Q ss_pred             HHHHHHHhcC
Q 014225          355 KQMEEEAKNL  364 (428)
Q Consensus       355 ~~l~~~~~~~  364 (428)
                      +.|++++...
T Consensus       137 ~~l~~~~~~~  146 (154)
T 3ia1_A          137 DALLLAGADL  146 (154)
T ss_dssp             HHHHHTTCCC
T ss_pred             HHHHhccCcc
Confidence            7777665433

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=99.83  E-value=1.1e-20  Score=166.19  Aligned_cols=141  Identities=16%  Similarity=0.245  Sum_probs=113.4

Q ss_pred             hhccCCCCccc-CCCCCceecccccCCcEEEEEEeccCCh-hHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC-
Q 014225          201 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCI-PCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD-  277 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~-~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d-  277 (428)
                      .+|.++|+|++ +.+|+ .+++++++||++||+||++||+ +|..++|.|.+++++|++.       +.++.||+|++| 
T Consensus         8 ~~g~~~p~f~l~~~~G~-~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~-------~~~~~vv~is~d~   79 (174)
T 1xzo_A            8 PLNYEVEPFTFQNQDGK-NVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAE-------NIDVRIISFSVDP   79 (174)
T ss_dssp             CCCEECCCCEEECTTSC-EEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHT-------TCCCEEEEEESCT
T ss_pred             ccccccCCcEEEcCCCC-EEehhhcCCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhc-------CCcEEEEEEEeCC
Confidence            36889999999 99999 9999999999999999999999 9999999999999999876       335999999998 


Q ss_pred             --CCHHHHHHHHhcCCcccc---ccCCcchhHHHHhc----------------CcCccceEEEECCCCcEEeccccchhh
Q 014225          278 --RDQTSFESYFGTMPWLAL---PFGDPTIKELTKYF----------------DVQGIPCLVIIGPEGKTVTKQGRNLIN  336 (428)
Q Consensus       278 --~~~~~~~~~~~~~~~~~~---~~~~d~~~~~~~~~----------------~v~~~P~~~lid~~G~i~~~~~~~~~~  336 (428)
                        .+.+.+++|.++++ +.+   +++.|.+..+.+.|                ++..+|++||||++|+|+.+..+..  
T Consensus        80 ~~d~~~~~~~~~~~~~-~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~~--  156 (174)
T 1xzo_A           80 ENDKPKQLKKFAANYP-LSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVE--  156 (174)
T ss_dssp             TTCCHHHHHHHHTTSC-CCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSS--
T ss_pred             CCCCHHHHHHHHHHcC-CCCcceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCCC--
Confidence              46788999998876 445   66666555554443                4678999999999999998753311  


Q ss_pred             cccccCCCCChHHHHHHHHHHHHHHh
Q 014225          337 LYQENAYPFTEAKLEFLEKQMEEEAK  362 (428)
Q Consensus       337 ~~g~~~~p~~~~~~~~L~~~l~~~~~  362 (428)
                             +.   ..++|.+.|+++++
T Consensus       157 -------~~---~~~~l~~~l~~ll~  172 (174)
T 1xzo_A          157 -------NT---PYDDIISDVKSAST  172 (174)
T ss_dssp             -------SC---CHHHHHHHHHHHTC
T ss_pred             -------CC---CHHHHHHHHHHHHh
Confidence                   11   13667777777654

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=99.83  E-value=1.4e-20  Score=171.78  Aligned_cols=140  Identities=15%  Similarity=0.163  Sum_probs=118.5

Q ss_pred             hhccCCCCccc-CC--CC--Cceeccccc-CCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEE
Q 014225          201 LLTNHDRGYLL-GH--PP--DEKVPVSSL-VGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVF  273 (428)
Q Consensus       201 ~~g~~~p~f~l-~~--~g--~~~v~l~~~-~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~  273 (428)
                      .+|.++|+|++ +.  +|  + .++++++ +||++||+|| ++||++|+.++|.|.+++++|++.         +++||+
T Consensus        22 ~~G~~aP~f~l~~~~~~G~~~-~v~l~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~---------~v~vv~   91 (213)
T 2i81_A           22 YVGKEAPFFKAEAVFGDNSFG-EVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHER---------NVELLG   91 (213)
T ss_dssp             CBTSBCCCCEEEEECTTSCEE-EEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHT---------TEEEEE
T ss_pred             cCCCcCCCeEeeccccCCcee-EEeHHHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC---------CCEEEE
Confidence            46999999999 87  89  8 9999999 9999999999 999999999999999999999876         799999


Q ss_pred             EEcCCCHHHHHHHHhcCC------ccccccCCcchhHHHHhcCcC-----ccceEEEECCCCcEEeccccchhhcccccC
Q 014225          274 VSTDRDQTSFESYFGTMP------WLALPFGDPTIKELTKYFDVQ-----GIPCLVIIGPEGKTVTKQGRNLINLYQENA  342 (428)
Q Consensus       274 is~d~~~~~~~~~~~~~~------~~~~~~~~d~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~~~~~~~~g~~~  342 (428)
                      |++| +.+..++|.+...      .++||++.|....+++.|++.     .+|++||||++|+|+++..+..       .
T Consensus        92 Is~D-~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~g~~~p~~~lID~~G~i~~~~~~~~-------~  163 (213)
T 2i81_A           92 CSVD-SKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLFDDSVSLRAFVLIDMNGIVQHLLVNNL-------A  163 (213)
T ss_dssp             EESS-CHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECEEEEEECTTSBEEEEEEECT-------T
T ss_pred             EeCC-CHHHHHHHHHHHHhhCCccCCCceEEECCchHHHHHhCCccccCCcccEEEEECCCCEEEEEEecCC-------C
Confidence            9998 6677888888762      478899888889999999999     8999999999999999853321       1


Q ss_pred             CCCChHHHHHHHHHHHHHH
Q 014225          343 YPFTEAKLEFLEKQMEEEA  361 (428)
Q Consensus       343 ~p~~~~~~~~L~~~l~~~~  361 (428)
                         .....++|.+.|+++.
T Consensus       164 ---~~~~~~ell~~l~~l~  179 (213)
T 2i81_A          164 ---IGRSVDEILRIIDAIQ  179 (213)
T ss_dssp             ---CCCCHHHHHHHHHHHH
T ss_pred             ---CCCCHHHHHHHHHHHH
Confidence               1123466677776665

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.83  E-value=3.1e-20  Score=161.73  Aligned_cols=116  Identities=22%  Similarity=0.299  Sum_probs=103.2

Q ss_pred             ccccccCc-cccCCCCEEecccCCCCE-EEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHH
Q 014225           38 LASKDRDY-LLNQHGTQVKVSDLEGKV-TALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNY  114 (428)
Q Consensus        38 ~g~~~pdf-l~~~~G~~v~l~~~~gk~-vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~  114 (428)
                      +|..+|+| |.+.+|+++++++++||+ ++|+|| ++||++|+.++|.|++++++|++.+  +++++|+.| +.+.+++|
T Consensus         4 ~G~~~P~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~--v~vv~vs~d-~~~~~~~~   80 (161)
T 3drn_A            4 VGDKAPLFEGIADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYD--VVVIGVSSD-DINSHKRF   80 (161)
T ss_dssp             TTSBCCCCEEEETTSCEEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTC--EEEEEEESC-CHHHHHHH
T ss_pred             CCCcCCCeEeecCCCCEEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcC--CEEEEEeCC-CHHHHHHH
Confidence            68999999 999999999999999997 999999 9999999999999999999999887  999999998 47789999


Q ss_pred             HhcCCCceeccCChHHHHHHHhhcCCCC----CceEEEEcCCCCCCCcccc
Q 014225          115 RACMPWLAVPYSDLETKKALNRKFDIEG----IPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       115 ~~~~~~~~~~~~d~~~~~~l~~~~~v~~----~P~~~lid~~~~dG~i~~~  161 (428)
                      ++++++....+.|.+  ..+.+.|++.+    +|+++|||+   +|+++..
T Consensus        81 ~~~~~~~~~~~~d~~--~~~~~~~~v~~~~~~~P~~~lid~---~G~i~~~  126 (161)
T 3drn_A           81 KEKYKLPFILVSDPD--KKIRELYGAKGFILPARITFVIDK---KGIIRHI  126 (161)
T ss_dssp             HHHTTCCSEEEECTT--SHHHHHTTCCCSSSCCCEEEEECT---TSBEEEE
T ss_pred             HHHhCCCceEEECCc--HHHHHHcCCCCcCcccceEEEECC---CCEEEEE
Confidence            998775433233433  78999999999    999999999   9999866

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=99.83  E-value=4.3e-21  Score=167.97  Aligned_cols=138  Identities=11%  Similarity=0.074  Sum_probs=114.5

Q ss_pred             hccCCCCccc-CCCCCceecccccCCcEEEEEEeccC-ChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARW-CIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD  279 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~w-C~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~  279 (428)
                      +|.++|+|++ +.+|+ .+++++++||+++|+||++| |++|+.++|.|++++++|  .         ++++++|++| +
T Consensus        20 ~G~~~p~f~l~~~~G~-~~~l~~~~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~--~---------~~~vv~is~d-~   86 (167)
T 2jsy_A           20 VGDQAPDFTVLTNSLE-EKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL--G---------DVNVYTISAD-L   86 (167)
T ss_dssp             TTSCCCCCEEEBTTCC-EEEHHHHTTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH--S---------SCEEEEEECS-S
T ss_pred             CCCcCCceEEECCCCC-EeeHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHc--C---------CCEEEEEECC-C
Confidence            5889999999 99999 99999999999999999999 999999999999999999  4         5899999998 4


Q ss_pred             HHHHHHHHhcCCccccccCCc-chhHHHHhcCcCc------cceEEEECCCCcEEeccccchhhcccccCCCCChHHHHH
Q 014225          280 QTSFESYFGTMPWLALPFGDP-TIKELTKYFDVQG------IPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEF  352 (428)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~v~~------~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~  352 (428)
                      .+..++|.+++++..+|+..| ....+.+.|++..      +|+++|||++|+|++++.+...         ......++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~i~~~~~g~~~---------~~~~~~~~  157 (167)
T 2jsy_A           87 PFAQARWCGANGIDKVETLSDHRDMSFGEAFGVYIKELRLLARSVFVLDENGKVVYAEYVSEA---------TNHPNYEK  157 (167)
T ss_dssp             GGGTSCCGGGSSCTTEEEEEGGGTCHHHHHTTCBBTTTCSBCCEEEEECTTSCEEEEEECSBT---------TSCCCSHH
T ss_pred             HHHHHHHHHhcCCCCceEeeCCchhHHHHHhCCccccCCceeeEEEEEcCCCcEEEEEecCCc---------CCCCCHHH
Confidence            566778888877547888888 7789999999987      4999999999999998643211         11222356


Q ss_pred             HHHHHHHHH
Q 014225          353 LEKQMEEEA  361 (428)
Q Consensus       353 L~~~l~~~~  361 (428)
                      +.+.|++++
T Consensus       158 l~~~l~~ll  166 (167)
T 2jsy_A          158 PIEAAKALV  166 (167)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            667776665

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=99.83  E-value=1.6e-20  Score=164.22  Aligned_cols=136  Identities=9%  Similarity=0.069  Sum_probs=105.8

Q ss_pred             hccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC--
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR--  278 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~--  278 (428)
                      .|.++|+|++ +.+|+ .+++++++||++||+||++||++|+.++|.|++++++|+++         ++.|++|++|.  
T Consensus         7 ~g~~~p~f~l~~~~G~-~~~l~~~~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~---------~~~vv~v~~d~~~   76 (169)
T 2v1m_A            7 SWNSIYEFTVKDINGV-DVSLEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGK---------GLRILAFPCNQFG   76 (169)
T ss_dssp             CCCSGGGCEEEBTTSC-EEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG---------TEEEEEEECCCST
T ss_pred             CCcccccceeecCCCC-CccHHHcCCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcC---------CeEEEEEECCccC
Confidence            5889999999 99999 99999999999999999999999999999999999999876         79999999973  


Q ss_pred             -----CHHHHHHHH-hcCCccccccCC--cchhHHH----H-----hcC-----cCccceEEEECCCCcEEeccccchhh
Q 014225          279 -----DQTSFESYF-GTMPWLALPFGD--PTIKELT----K-----YFD-----VQGIPCLVIIGPEGKTVTKQGRNLIN  336 (428)
Q Consensus       279 -----~~~~~~~~~-~~~~~~~~~~~~--d~~~~~~----~-----~~~-----v~~~P~~~lid~~G~i~~~~~~~~~~  336 (428)
                           +.+.+++|+ .+.+ +.+|+..  |......    +     .++     +..+|++||||++|+|+.+..+.   
T Consensus        77 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~---  152 (169)
T 2v1m_A           77 GQEPWAEAEIKKFVTEKYG-VQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPT---  152 (169)
T ss_dssp             TCCCSCHHHHHHHHHHHHC-CCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEECTT---
T ss_pred             CCCCCCHHHHHHHHHHhcC-CCCceEEEEeecCccccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEcCCC---
Confidence                 467788884 6554 4566553  3332221    1     125     55679999999999999985431   


Q ss_pred             cccccCCCCChHHHHHHHHHHHHHHh
Q 014225          337 LYQENAYPFTEAKLEFLEKQMEEEAK  362 (428)
Q Consensus       337 ~~g~~~~p~~~~~~~~L~~~l~~~~~  362 (428)
                              .+.   ++|.+.|+++++
T Consensus       153 --------~~~---~~l~~~i~~ll~  167 (169)
T 2v1m_A          153 --------TAP---YDIEGDIMELLE  167 (169)
T ss_dssp             --------SCG---GGGHHHHHHHHH
T ss_pred             --------CCH---HHHHHHHHHHhc
Confidence                    112   456677777665

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.83  E-value=1.5e-20  Score=157.92  Aligned_cols=112  Identities=18%  Similarity=0.238  Sum_probs=103.3

Q ss_pred             CCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHH
Q 014225          205 HDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSF  283 (428)
Q Consensus       205 ~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~  283 (428)
                      ++|+|.+ +.+|+ .+++++++||+++|+||++||++|+.+.|.|.+++++++           ++.+++|++|.+.+.+
T Consensus         3 ~~p~~~l~~~~g~-~~~l~~~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-----------~~~~~~v~~~~~~~~~   70 (136)
T 1lu4_A            3 ERLQFTATTLSGA-PFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP-----------AVTFVGIATRADVGAM   70 (136)
T ss_dssp             GGGCCEEEBTTSC-EEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEECSSCHHHH
T ss_pred             CCCCeEeecCCCC-eecHHHhCCCEEEEEEECCcChhHHHHHHHHHHHHHHCC-----------CcEEEEEEcCCCHHHH
Confidence            5789999 99999 999999999999999999999999999999999998875           4899999999889999


Q ss_pred             HHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEecc
Q 014225          284 ESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       284 ~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      +++...++ +++|+..|....+++.|++.++|+++|+|++|+++ +.
T Consensus        71 ~~~~~~~~-~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~i~-~~  115 (136)
T 1lu4_A           71 QSFVSKYN-LNFTNLNDADGVIWARYNVPWQPAFVFYRADGTST-FV  115 (136)
T ss_dssp             HHHHHHHT-CCSEEEECTTSHHHHHTTCCSSSEEEEECTTSCEE-EE
T ss_pred             HHHHHHcC-CCceEEECCchhHHHhcCCCCCCEEEEECCCCcEE-EE
Confidence            99999877 47888888889999999999999999999999998 53

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.83  E-value=2.4e-20  Score=158.98  Aligned_cols=121  Identities=19%  Similarity=0.275  Sum_probs=105.3

Q ss_pred             cccccccCc-cccCCCCEEecc--cCCCCEEEEEEecCCChhhhhhHHHHHHHHHHH-hcCCCcEEEEEEecCCChHHHH
Q 014225           37 LLASKDRDY-LLNQHGTQVKVS--DLEGKVTALYFSANWYPPCGNFTGVLVDVYEEL-RNNGSDFEVVFVSSDEDLNAFN  112 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~--~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~-~~~~~~~~ii~vs~D~~~~~~~  112 (428)
                      .+|..+|+| +.+.+|+.++++  +++||+++|+||++||++|+.++|.|.++++++ ++.+  +.+++|++|.+.+.++
T Consensus         6 ~~g~~~p~~~l~~~~g~~~~l~~~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~--~~~v~v~~d~~~~~~~   83 (148)
T 3fkf_A            6 TVGKSAPYFSLPNEKGEKLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKN--FAMLGISLDIDREAWE   83 (148)
T ss_dssp             CTTSBCCCCCEEBTTSCEECTTSTTTTTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTT--EEEEEEECCSCHHHHH
T ss_pred             cCCCcCCCeEeeCCCCCEEeccccccCCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCC--eEEEEEECCCCHHHHH
Confidence            368999999 999999999999  999999999999999999999999999999999 7766  9999999999999999


Q ss_pred             HHHhcCCCceeccCCh-HHHHHHHhhcCCCCCceEEEEcCCCCCCCccccc
Q 014225          113 NYRACMPWLAVPYSDL-ETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       113 ~~~~~~~~~~~~~~d~-~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~~  162 (428)
                      ++++++++....+.+. +....+++.|++.++|++++||+   +|+++...
T Consensus        84 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~~  131 (148)
T 3fkf_A           84 TAIKKDTLSWDQVCDFTGLSSETAKQYAILTLPTNILLSP---TGKILARD  131 (148)
T ss_dssp             HHHHHTTCCSEEECCSCGGGCHHHHHTTCCSSSEEEEECT---TSBEEEES
T ss_pred             HHHHHcCCCceEEEccCCcchHHHHhcCCCCcCEEEEECC---CCeEEEec
Confidence            9999776432222232 11268999999999999999999   99988664

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.83  E-value=1.3e-20  Score=203.81  Aligned_cols=176  Identities=15%  Similarity=0.216  Sum_probs=123.3

Q ss_pred             ccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHh
Q 014225           57 SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR  136 (428)
Q Consensus        57 ~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~  136 (428)
                      +++.|++++|+|||+||++|+.++|.|.+++++++++   +.++.|+.|..                        ..+++
T Consensus       451 ~~~~~~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~~~---v~~~~vd~~~~------------------------~~~~~  503 (780)
T 3apo_A          451 PASDKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQ---LKVGTLDCTIH------------------------EGLCN  503 (780)
T ss_dssp             CTTCCSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC------------------------HHHHH
T ss_pred             HHcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---eEEEEEeCCCC------------------------HHHHH
Confidence            3458899999999999999999999999999999754   88888776543                        56888


Q ss_pred             hcCCCCCceEEEEcCCCCCCCcccccchhhhhhcccCccccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCcccCCCCC
Q 014225          137 KFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPD  216 (428)
Q Consensus       137 ~~~v~~~P~~~lid~~~~dG~i~~~~~~~~i~~~g~~~~p~t~~~~~~l~~~~~~~~~~~~~~~~~g~~~p~f~l~~~g~  216 (428)
                      .|++.++|++++++    +|++....        |.    .+.+.+   ......         .++   |... ..++.
T Consensus       504 ~~~v~~~Pt~~~~~----~g~~~~~~--------g~----~~~~~l---~~fi~~---------~~~---~~v~-~l~~~  551 (780)
T 3apo_A          504 MYNIQAYPTTVVFN----QSSIHEYE--------GH----HSAEQI---LEFIED---------LRN---PSVV-SLTPS  551 (780)
T ss_dssp             HTTCCSSSEEEEEE----TTEEEEEC--------SC----SCHHHH---HHHHHH---------HHS---CSEE-ECCHH
T ss_pred             HcCCCcCCeEEEEc----CCceeeec--------Cc----ccHHHH---HHHHHh---------hcc---ccee-ecCcc
Confidence            99999999999996    67542110        11    111212   111111         111   1111 11111


Q ss_pred             --ceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccc
Q 014225          217 --EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLA  294 (428)
Q Consensus       217 --~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~  294 (428)
                        +.+-...-.+++++|.|++|||++|+++.|.+.++++.++++          +.++.|+++..               
T Consensus       552 ~f~~~v~~~~~~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~~~----------v~~~~vd~~~~---------------  606 (780)
T 3apo_A          552 TFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGL----------INVGSVDCGQY---------------  606 (780)
T ss_dssp             HHHHHTTTCCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT----------SEEEEEETTTT---------------
T ss_pred             cHHHHhhccCCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCC----------eEEEEEECcch---------------
Confidence              011111123467899999999999999999999999999754          77777776644               


Q ss_pred             cccCCcchhHHHHhcCcCccceEEEECCCC
Q 014225          295 LPFGDPTIKELTKYFDVQGIPCLVIIGPEG  324 (428)
Q Consensus       295 ~~~~~d~~~~~~~~~~v~~~P~~~lid~~G  324 (428)
                              ..+++.|+|.++|+++++..++
T Consensus       607 --------~~l~~~~~v~~~Pti~~~~~~~  628 (780)
T 3apo_A          607 --------HSFCTQENVQRYPEIRFYPQKS  628 (780)
T ss_dssp             --------HHHHHHTTCCSSSEEEEECCCS
T ss_pred             --------HHHHHHcCCCCCCeEEEEcCCC
Confidence                    6788999999999999996544

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.83  E-value=1.7e-19  Score=166.09  Aligned_cols=175  Identities=14%  Similarity=0.156  Sum_probs=115.8

Q ss_pred             CCCCEEEEEE----ecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHH
Q 014225           59 LEGKVTALYF----SANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKAL  134 (428)
Q Consensus        59 ~~gk~vlv~F----~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l  134 (428)
                      .++.++++.|    |++||++|+.++|.+.++++++.+.+ ++.+..|+.|..                        ..+
T Consensus        19 ~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~-~v~~~~vd~~~~------------------------~~l   73 (229)
T 2ywm_A           19 FKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQD-KIKLDIYSPFTH------------------------KEE   73 (229)
T ss_dssp             CCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTT-TEEEEEECTTTC------------------------HHH
T ss_pred             ccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCC-ceEEEEecCccc------------------------HHH
Confidence            4455666666    59999999999999999999985432 488877755433                        789


Q ss_pred             HhhcCCCCCceEEEEcCCCCCCCcc-cccchhhhhhcccCccccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCcccCC
Q 014225          135 NRKFDIEGIPCLVVLQPYDDKDDAT-LHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGH  213 (428)
Q Consensus       135 ~~~~~v~~~P~~~lid~~~~dG~i~-~~~~~~~i~~~g~~~~p~t~~~~~~l~~~~~~~~~~~~~~~~~g~~~p~f~l~~  213 (428)
                      ++.|+|.++|++++++    +|... ...+.           +........+.....           ++.....    .
T Consensus        74 ~~~~~v~~~Ptl~~~~----~~~~~~~~~G~-----------~~~~~l~~~~~~~~~-----------~~~~~~~----l  123 (229)
T 2ywm_A           74 TEKYGVDRVPTIVIEG----DKDYGIRYIGL-----------PAGLEFTTLINGIFH-----------VSQRKPQ----L  123 (229)
T ss_dssp             HHHTTCCBSSEEEEES----SSCCCEEEESC-----------CCTTHHHHHHHHHHH-----------HHTTCCS----C
T ss_pred             HHHcCCCcCcEEEEEC----CCcccceecCC-----------ccHHHHHHHHHHHHh-----------ccCCccC----C
Confidence            9999999999999996    34322 11111           111111111111110           0011111    1


Q ss_pred             CCCceec-ccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCc
Q 014225          214 PPDEKVP-VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPW  292 (428)
Q Consensus       214 ~g~~~v~-l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~  292 (428)
                      +.. .+. +....+++++++||++||++|+.+.|.+++++.++.           ++.++.|+++..             
T Consensus       124 ~~~-~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~-----------~v~~~~vd~~~~-------------  178 (229)
T 2ywm_A          124 SEK-TLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALAND-----------YITSKVIDASEN-------------  178 (229)
T ss_dssp             CHH-HHHHHTTCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHCT-----------TEEEEEEEGGGC-------------
T ss_pred             CHH-HHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHHCC-----------CeEEEEEECCCC-------------
Confidence            111 111 112334566899999999999999999999988872           488888888754             


Q ss_pred             cccccCCcchhHHHHhcCcCccceEEEECCCCcE
Q 014225          293 LALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKT  326 (428)
Q Consensus       293 ~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i  326 (428)
                                .++++.|+|.++|++++   +|++
T Consensus       179 ----------~~l~~~~~v~~~Pt~~~---~G~~  199 (229)
T 2ywm_A          179 ----------QDLAEQFQVVGVPKIVI---NKGV  199 (229)
T ss_dssp             ----------HHHHHHTTCCSSSEEEE---GGGT
T ss_pred             ----------HHHHHHcCCcccCEEEE---CCEE
Confidence                      67899999999999988   7774

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=99.83  E-value=2e-20  Score=163.73  Aligned_cols=119  Identities=13%  Similarity=0.196  Sum_probs=98.3

Q ss_pred             hccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC--
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR--  278 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~--  278 (428)
                      .|.++|+|++ +.+|+ .+++++++||++||+||++||++|+.++|.|++++++|+++         ++.|++|++|.  
T Consensus         8 ~g~~~p~f~l~~~~g~-~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~---------~~~vv~vs~d~~~   77 (170)
T 2p5q_A            8 NPESVHDFTVKDAKEN-DVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQ---------GLEILAFPCNQFG   77 (170)
T ss_dssp             --CCGGGCEEEBTTSC-EEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG---------TEEEEEEECCTTT
T ss_pred             CCccccceEEEcCCCC-EecHHHhCCCEEEEEEEeccCCccHHHHHHHHHHHHHhccC---------CEEEEEEECCCCC
Confidence            5889999999 99999 99999999999999999999999999999999999999876         79999999973  


Q ss_pred             -----CHHHHHHHHh-cCCccccccC--CcchhHH----H-----HhcCc--Cccc---eEEEECCCCcEEeccc
Q 014225          279 -----DQTSFESYFG-TMPWLALPFG--DPTIKEL----T-----KYFDV--QGIP---CLVIIGPEGKTVTKQG  331 (428)
Q Consensus       279 -----~~~~~~~~~~-~~~~~~~~~~--~d~~~~~----~-----~~~~v--~~~P---~~~lid~~G~i~~~~~  331 (428)
                           +.+.+++|++ .++ +.+|+.  .|....+    .     ..+++  .++|   ++||||++|+|+.+..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~~  151 (170)
T 2p5q_A           78 EEEPGTNDQITDFVCTRFK-SEFPIFDKIDVNGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRYY  151 (170)
T ss_dssp             TCCCSCHHHHHHHHHHHTC-CCSCBBCCCBSSSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEEC
T ss_pred             CCCCCCHHHHHHHHHHhcC-CCceeEeeeccCCCchHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEeeC
Confidence                 6778888888 544 566666  3433322    1     22466  7888   9999999999999854

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.83  E-value=1.3e-20  Score=163.46  Aligned_cols=117  Identities=17%  Similarity=0.345  Sum_probs=105.3

Q ss_pred             hccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCH
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ  280 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~  280 (428)
                      .|.++|+|.+ +.+|+ .+++++++||+++|+||++||++|+.++|.|.+++++|++.         ++.+++|++|.  
T Consensus        17 ~G~~~p~f~l~~~~g~-~~~l~~~~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~---------~~~~v~v~~d~--   84 (158)
T 3hdc_A           17 TGALAPNFKLPTLSGE-NKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKG---------DLVVLAVNVEK--   84 (158)
T ss_dssp             TTSBCCCCEEECTTSC-EEESGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTT---------SEEEEEEECSS--
T ss_pred             CCCcCCCceeEcCCCC-EEehHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccC---------CeEEEEEeCCH--
Confidence            5899999999 99999 99999999999999999999999999999999999999755         79999999987  


Q ss_pred             HHHHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEecccc
Q 014225          281 TSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~  332 (428)
                       .++++....+ +.+++..|....+.+.|++.++|+++|||++|+|+.+..+
T Consensus        85 -~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~G  134 (158)
T 3hdc_A           85 -RFPEKYRRAP-VSFNFLSDATGQVQQRYGANRLPDTFIVDRKGIIRQRVTG  134 (158)
T ss_dssp             -SCCGGGGGCC-CSCEEEECTTSHHHHHTTCCSSSEEEEECTTSBEEEEEES
T ss_pred             -HHHHHHHHcC-CCceEEECchHHHHHHhCCCCcceEEEEcCCCCEEEEEeC
Confidence             3556666665 5688888888999999999999999999999999998644

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.83  E-value=6.9e-21  Score=169.25  Aligned_cols=120  Identities=13%  Similarity=0.140  Sum_probs=98.8

Q ss_pred             hhccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC-
Q 014225          201 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-  278 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~-  278 (428)
                      .+|.++|+|++ +.+|+ .+++++++||++||+||++|||+|+.++|.|++++++|+++         ++.|++|++|. 
T Consensus        24 ~~g~~~p~f~l~~~~G~-~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~---------~v~vv~vs~d~~   93 (181)
T 2p31_A           24 QQEQDFYDFKAVNIRGK-LVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPH---------HFNVLAFPCNQF   93 (181)
T ss_dssp             ---CCGGGCEEEBTTSC-EEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG---------TEEEEEEECCCS
T ss_pred             CcCCccCceEeecCCCC-EecHHHcCCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcC---------CEEEEEEECcCC
Confidence            35889999999 99999 99999999999999999999999999999999999999877         79999999974 


Q ss_pred             ------CHHHHHHHHhc-CCccccccCC--cchhHHHH---hcCcCccc-------eEEEECCCCcEEeccc
Q 014225          279 ------DQTSFESYFGT-MPWLALPFGD--PTIKELTK---YFDVQGIP-------CLVIIGPEGKTVTKQG  331 (428)
Q Consensus       279 ------~~~~~~~~~~~-~~~~~~~~~~--d~~~~~~~---~~~v~~~P-------~~~lid~~G~i~~~~~  331 (428)
                            +.+++++|+++ .+ +.+|+..  |.+.....   .|++.++|       ++||||++|+|+.+..
T Consensus        94 ~~~e~~~~~~~~~~~~~~~~-~~~p~~~~~d~~g~~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~~~  164 (181)
T 2p31_A           94 GQQEPDSNKEIESFARRTYS-VSFPMFSKIAVTGTGAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGAWD  164 (181)
T ss_dssp             TTCCCSCHHHHHHHHHHHHC-CCSCBBCCCCCSSTTSCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEEEC
T ss_pred             CCCCCCCHHHHHHHHHhhcC-CCceeEeecccCCccchhhhhhhhhcCCCccccceeEEEEcCCCCEEEEeC
Confidence                  67788888887 55 5677764  32222211   35577889       9999999999998853

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=99.83  E-value=1.4e-20  Score=165.42  Aligned_cols=134  Identities=14%  Similarity=0.165  Sum_probs=97.8

Q ss_pred             ccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC----
Q 014225          203 TNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD----  277 (428)
Q Consensus       203 g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d----  277 (428)
                      +..+|+|++ +.+|+ .+++++++||++||+||++||++|+ ++|.|++++++|+++         ++.|++|++|    
T Consensus         9 ~~~~~~f~l~d~~G~-~~~l~~~~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~---------~v~vv~vs~d~~~~   77 (171)
T 3cmi_A            9 MSEFYKLAPVDKKGQ-PFPFDQLKGKVVLIVNVASKCGFTP-QYKELEALYKRYKDE---------GFTIIGFPCNQFGH   77 (171)
T ss_dssp             -CGGGGCCCBBTTSC-BCCGGGGTTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGG---------TEEEEEEEECSCC-
T ss_pred             hhheeeeEEEcCCCC-EecHHHcCCCEEEEEEEecCCCcch-hHHHHHHHHHHhccC---------CeEEEEEECcccCC
Confidence            667899999 99999 9999999999999999999999999 999999999999876         7999999986    


Q ss_pred             ---CCHHHHHHHH-hcCCccccccCCcch--hH----H-----HHhcCcCccc------eEEEECCCCcEEeccccchhh
Q 014225          278 ---RDQTSFESYF-GTMPWLALPFGDPTI--KE----L-----TKYFDVQGIP------CLVIIGPEGKTVTKQGRNLIN  336 (428)
Q Consensus       278 ---~~~~~~~~~~-~~~~~~~~~~~~d~~--~~----~-----~~~~~v~~~P------~~~lid~~G~i~~~~~~~~~~  336 (428)
                         .+.+.+++|+ ++.+ +++|+..|.+  ..    +     .+.|++.++|      ++||||++|+|+.+..+.   
T Consensus        78 ~~~d~~~~~~~~~~~~~~-~~~p~~~d~d~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~---  153 (171)
T 3cmi_A           78 QEPGSDEEIAQFCQLNYG-VTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSL---  153 (171)
T ss_dssp             -----------------C-CCSCBBCCCBSSSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEEECTT---
T ss_pred             CCCCCHHHHHHHHHhccC-CCceEEeeccCCCccchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEEeCCC---
Confidence               3566788888 6655 5677765421  11    1     2468999999      999999999999985431   


Q ss_pred             cccccCCCCChHHHHHHHHHHHHHHh
Q 014225          337 LYQENAYPFTEAKLEFLEKQMEEEAK  362 (428)
Q Consensus       337 ~~g~~~~p~~~~~~~~L~~~l~~~~~  362 (428)
                              .+.   ++|.+.|+++++
T Consensus       154 --------~~~---~~l~~~i~~ll~  168 (171)
T 3cmi_A          154 --------TKP---SSLSETIEELLK  168 (171)
T ss_dssp             --------SCG---GGGHHHHHHHHT
T ss_pred             --------CCH---HHHHHHHHHHHH
Confidence                    122   456666776665

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.83  E-value=1.6e-20  Score=171.17  Aligned_cols=141  Identities=13%  Similarity=0.141  Sum_probs=115.7

Q ss_pred             hhccCCCCccc-CC---CCCceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEE
Q 014225          201 LLTNHDRGYLL-GH---PPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS  275 (428)
Q Consensus       201 ~~g~~~p~f~l-~~---~g~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is  275 (428)
                      .+|.++|+|++ +.   +|+ .+++++++||++||+|| ++||++|..++|.|++++++|+++         +++||+|+
T Consensus        20 ~~G~~aP~f~l~~~~~~~g~-~v~l~d~~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~---------~v~vv~Is   89 (211)
T 2pn8_A           20 FQSMPAPYWEGTAVIDGEFK-ELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSI---------NTEVVACS   89 (211)
T ss_dssp             CSSCBCCCCEEEEEETTEEE-EEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTT---------TEEEEEEE
T ss_pred             CCCCcCCCeEeecccCCCCc-EEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC---------CCEEEEEE
Confidence            46999999999 64   457 99999999999999999 999999999999999999999876         89999999


Q ss_pred             cCCCHHHHHHHHhcCC------ccccccCCcchhHHHHhcCcC------ccceEEEECCCCcEEeccccchhhcccccCC
Q 014225          276 TDRDQTSFESYFGTMP------WLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQGRNLINLYQENAY  343 (428)
Q Consensus       276 ~d~~~~~~~~~~~~~~------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~  343 (428)
                      +| +.+..++|.+...      .++||++.|....+++.|++.      .+|++||||++|+|++...+..       . 
T Consensus        90 ~D-~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~I~~~~~g~~-------~-  160 (211)
T 2pn8_A           90 VD-SQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDL-------P-  160 (211)
T ss_dssp             SS-CHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECT-------T-
T ss_pred             CC-CHHHHHHHHHHhhhccCccCCceEEEECCchHHHHHcCCcccCCCcccceEEEECCCCEEEEEEecCC-------C-
Confidence            98 5667888888761      478888888888999999994      6999999999999999853321       1 


Q ss_pred             CCChHHHHHHHHHHHHHHh
Q 014225          344 PFTEAKLEFLEKQMEEEAK  362 (428)
Q Consensus       344 p~~~~~~~~L~~~l~~~~~  362 (428)
                        .....+++.+.|+++..
T Consensus       161 --~~~~~~ell~~l~~l~~  177 (211)
T 2pn8_A          161 --VGRSVDETLRLVQAFQY  177 (211)
T ss_dssp             --BCCCHHHHHHHHHHHHH
T ss_pred             --CCCCHHHHHHHHHHhhh
Confidence              11234666777766553

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=99.83  E-value=7.7e-21  Score=166.47  Aligned_cols=116  Identities=12%  Similarity=0.065  Sum_probs=104.3

Q ss_pred             hccCCCCccc-CCCCCceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD  279 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~  279 (428)
                      +|.++|+|++ +.+|+ .+++++++||+++|+|| ++||++|..++|.|++++++   .         ++.|++|+.| +
T Consensus        22 ~G~~aP~f~l~~~~G~-~~~l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~---~---------~~~vv~is~d-~   87 (166)
T 3p7x_A           22 EGDFAPDFTVLDNDLN-QVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK---E---------EGIVLTISAD-L   87 (166)
T ss_dssp             TTSBCCCCEEECTTSC-EEEGGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT---T---------TSEEEEEESS-C
T ss_pred             CCCCCCCeEEEcCCCC-EEeHHHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc---C---------CCEEEEEECC-C
Confidence            5899999999 99999 99999999999999999 78999999999999998877   3         6899999998 6


Q ss_pred             HHHHHHHHhcCCccccccCCcc-hhHHHHhcCcCc------cceEEEECCCCcEEeccc
Q 014225          280 QTSFESYFGTMPWLALPFGDPT-IKELTKYFDVQG------IPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~v~~------~P~~~lid~~G~i~~~~~  331 (428)
                      .+.+++|.++++.-+||+..|. ...+++.||+..      +|++||||++|+|++++.
T Consensus        88 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~  146 (166)
T 3p7x_A           88 PFAQKRWCASAGLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKEI  146 (166)
T ss_dssp             HHHHHHHHHHHTCSSCEEEECTTTCHHHHHHTCEETTTTEECCEEEEECTTCBEEEEEE
T ss_pred             HHHHHHHHHHcCCCceEEccCCchhHHHHHhCCccccCCceeeEEEEECCCCeEEEEEE
Confidence            7788899988774378888888 889999999985      899999999999999853

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=99.82  E-value=2.9e-20  Score=166.54  Aligned_cols=137  Identities=12%  Similarity=0.132  Sum_probs=110.9

Q ss_pred             hccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC--
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR--  278 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~--  278 (428)
                      .+.++|+|++ +.+|+ .+++++++||++||+||++||++|+.++|.|++++++|+++         +++||+|++|.  
T Consensus        24 ~~~~~p~f~l~~~~G~-~~~l~~~~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~---------~v~vv~vs~d~~~   93 (190)
T 2vup_A           24 AASSIFDFEVLDADHK-PYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQ---------GFTVLAFPCNQFG   93 (190)
T ss_dssp             CCCSGGGSCCBBTTSS-BCCGGGGTTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGG---------TCEEEEEECCCST
T ss_pred             CCCcccCeEEEcCCCC-EEEHHHcCCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcC---------CeEEEEEEcCccC
Confidence            3778999999 99999 99999999999999999999999999999999999999876         79999999983  


Q ss_pred             -----CHHHHHHHH-hcCCccccccCC--cchhHH----H-----HhcCcCccc------eEEEECCCCcEEeccccchh
Q 014225          279 -----DQTSFESYF-GTMPWLALPFGD--PTIKEL----T-----KYFDVQGIP------CLVIIGPEGKTVTKQGRNLI  335 (428)
Q Consensus       279 -----~~~~~~~~~-~~~~~~~~~~~~--d~~~~~----~-----~~~~v~~~P------~~~lid~~G~i~~~~~~~~~  335 (428)
                           +.+.+++|+ .+.+ +.||+..  |....+    .     ..|++.++|      ++||||++|+|+.+..+.  
T Consensus        94 ~~~~~~~~~~~~~~~~~~~-~~~p~l~~~D~~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~--  170 (190)
T 2vup_A           94 GQEPGNEEEIKEFVCTKFK-AEFPIMAKINVNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPG--  170 (190)
T ss_dssp             TCCCSCHHHHHHHHHHHHC-CCSCBBCCCBSSSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEEECTT--
T ss_pred             CCCCCCHHHHHHHHHHhcC-CCeEEEeecccCcccccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEEECCC--
Confidence                 677888888 6555 4566654  332222    1     346899999      999999999999985331  


Q ss_pred             hcccccCCCCChHHHHHHHHHHHHHHhc
Q 014225          336 NLYQENAYPFTEAKLEFLEKQMEEEAKN  363 (428)
Q Consensus       336 ~~~g~~~~p~~~~~~~~L~~~l~~~~~~  363 (428)
                               ..   .++|.+.|+++++.
T Consensus       171 ---------~~---~~~l~~~i~~ll~~  186 (190)
T 2vup_A          171 ---------AS---VKDIEKKLIPLLES  186 (190)
T ss_dssp             ---------CC---HHHHHHHHHHHHHC
T ss_pred             ---------CC---HHHHHHHHHHHHhh
Confidence                     12   25677888887764

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.82  E-value=1.7e-20  Score=168.81  Aligned_cols=140  Identities=12%  Similarity=0.157  Sum_probs=117.6

Q ss_pred             hccCCCCccc-CCC-------------C--CceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCC
Q 014225          202 LTNHDRGYLL-GHP-------------P--DEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGD  264 (428)
Q Consensus       202 ~g~~~p~f~l-~~~-------------g--~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~  264 (428)
                      +|.++|+|++ +.+             |  + .+++++++||++||+|| ++||++|..++|.|.+++++|+++      
T Consensus         6 ~G~~~P~f~l~~~~~~~~~~~~~~~~~G~~~-~v~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~------   78 (195)
T 2bmx_A            6 IGDQFPAYQLTALIGGDLSKVDAKQPGDYFT-TITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDR------   78 (195)
T ss_dssp             TTCBCCCCEEEEECSSCGGGSCCSSGGGGEE-EEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTT------
T ss_pred             CCCcCCCcCcccccccccccccccccCCCcc-EeeHHHhCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHC------
Confidence            5899999999 777             6  7 99999999999999999 999999999999999999999876      


Q ss_pred             CCCCEEEEEEEcCCCHHHHHHHHhcCC---ccccccCCcchhHHHHhcCcC-----ccceEEEECCCCcEEeccccchhh
Q 014225          265 ALEDFEVVFVSTDRDQTSFESYFGTMP---WLALPFGDPTIKELTKYFDVQ-----GIPCLVIIGPEGKTVTKQGRNLIN  336 (428)
Q Consensus       265 ~~~~~~iv~is~d~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~~~~~~  336 (428)
                         +++|++|++|. .+..++|.+.+.   .++||+..|....+.+.|++.     ++|+++|||++|+|+.+..+..  
T Consensus        79 ---~v~vv~Vs~d~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~--  152 (195)
T 2bmx_A           79 ---DAQILGVSIDS-EFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGVLNADGVADRVTFIVDPNNEIQFVSATAG--  152 (195)
T ss_dssp             ---TEEEEEEESSC-HHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTCBCTTSSBCEEEEEECTTSBEEEEEEECT--
T ss_pred             ---CCEEEEEECCC-HHHHHHHHHHhccccCCceeEEeCCchHHHHHhCCcccCCCccceEEEEcCCCeEEEEEecCC--
Confidence               79999999984 677888888762   367888888888999999999     9999999999999999854321  


Q ss_pred             cccccCCCCChHHHHHHHHHHHHHHh
Q 014225          337 LYQENAYPFTEAKLEFLEKQMEEEAK  362 (428)
Q Consensus       337 ~~g~~~~p~~~~~~~~L~~~l~~~~~  362 (428)
                           .   .....++|.+.|++++.
T Consensus       153 -----~---~~~~~~~l~~~l~~l~~  170 (195)
T 2bmx_A          153 -----S---VGRNVDEVLRVLDALQS  170 (195)
T ss_dssp             -----T---CCCCHHHHHHHHHHHHC
T ss_pred             -----C---CCCCHHHHHHHHHHHhh
Confidence                 1   11134677777877764

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.82  E-value=8.2e-21  Score=161.90  Aligned_cols=121  Identities=20%  Similarity=0.240  Sum_probs=105.0

Q ss_pred             cccccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHH
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYR  115 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~  115 (428)
                      .+|..+|+| +.+.+|+++++++++||+++|+||++||++|+.++|.|+++++++++.+  +.+++|+.|.+.+.+++++
T Consensus         6 ~~G~~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~--~~~v~v~~d~~~~~~~~~~   83 (148)
T 3hcz_A            6 LLGKKAPNLYMTDTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKG--IQVYAANIERKDEEWLKFI   83 (148)
T ss_dssp             CTTSBCCCCCCBCTTSCBCCGGGCCCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGT--EEEEEEECCSSSHHHHHHH
T ss_pred             CCCCcCCceEEecCCCCEEEhHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCC--EEEEEEEecCCHHHHHHHH
Confidence            469999999 9999999999999999999999999999999999999999999999886  9999999998888999999


Q ss_pred             hcCCCc-eeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCccccc
Q 014225          116 ACMPWL-AVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       116 ~~~~~~-~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~~  162 (428)
                      +++++. .....+......+.+.|++.++|++++||+   +|+++...
T Consensus        84 ~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~lid~---~G~i~~~~  128 (148)
T 3hcz_A           84 RSKKIGGWLNVRDSKNHTDFKITYDIYATPVLYVLDK---NKVIIAKR  128 (148)
T ss_dssp             HHHTCTTSEEEECTTCCCCHHHHHCCCSSCEEEEECT---TCBEEEES
T ss_pred             HHcCCCCceEEeccccchhHHHhcCcCCCCEEEEECC---CCcEEEec
Confidence            987643 111224332123899999999999999999   99998663

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=99.82  E-value=2.5e-20  Score=171.22  Aligned_cols=122  Identities=18%  Similarity=0.208  Sum_probs=106.7

Q ss_pred             hhhccCCCCccc-CC-CC--CceecccccCCcEEEEEEec-cCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEE
Q 014225          200 NLLTNHDRGYLL-GH-PP--DEKVPVSSLVGKTVGLYFSA-RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV  274 (428)
Q Consensus       200 ~~~g~~~p~f~l-~~-~g--~~~v~l~~~~gk~vll~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~i  274 (428)
                      -.+|.++|+|++ +. +|  + .+++++++||++||+||+ +||++|..++|.|++++++|+++         +++||+|
T Consensus        40 l~~G~~aP~f~l~~~~d~~G~-~v~l~~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~---------~v~vv~I  109 (222)
T 3ztl_A           40 LLPNRPAPEFKGQAVINGEFK-EICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSR---------NCQVIAC  109 (222)
T ss_dssp             CCSSEECCCCEEEEEETTEEE-EEEGGGGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTT---------TEEEEEE
T ss_pred             ccCCCCCCCeEEecccCCCCc-EEeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHC---------CCEEEEE
Confidence            346999999999 65 55  7 999999999999999996 99999999999999999999876         7999999


Q ss_pred             EcCCCHHHHHHHHhcC------CccccccCCcchhHHHHhcCcC------ccceEEEECCCCcEEecccc
Q 014225          275 STDRDQTSFESYFGTM------PWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       275 s~d~~~~~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~  332 (428)
                      ++|. .++..+|.+..      ..++||++.|....+.+.|++.      .+|++||||++|+|+++..+
T Consensus       110 s~D~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g  178 (222)
T 3ztl_A          110 STDS-QYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAFRGLFIIDPNGILRQITIN  178 (222)
T ss_dssp             ESSC-HHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHHHHTTCBCTTTSSBCEEEEEECTTSEEEEEEEE
T ss_pred             ECCC-HHHHHHHHHHhhhhccccccceeEEeCCchHHHHHcCCeecCCCCccceEEEECCCCeEEEEEec
Confidence            9984 55666776654      2578898888889999999998      89999999999999998543

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=99.82  E-value=1.2e-20  Score=165.16  Aligned_cols=117  Identities=13%  Similarity=0.101  Sum_probs=104.0

Q ss_pred             hccCCCCccc-CCCCCceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD  279 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~  279 (428)
                      +|.++|+|++ +.+|+ .+++++++||++||+|| ++||++|..++|.|++++++|  .         +++||+|++| +
T Consensus        19 ~G~~~P~f~l~~~~G~-~v~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~---------~v~vv~Is~d-~   85 (165)
T 1q98_A           19 VGEIVENFILVGNDLA-DVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL--S---------NTIVLCISAD-L   85 (165)
T ss_dssp             TTCBCCCCEEECTTSC-EEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS--T---------TEEEEEEESS-C
T ss_pred             CCCCCCCeEEECCCCC-EEehHHhCCCeEEEEEECCCCCCccHHHHHHHHHHHHHc--C---------CCEEEEEeCC-C
Confidence            5889999999 99999 99999999999999999 799999999999999999998  4         6999999998 5


Q ss_pred             HHHHHHHHhcCCccccccCCcc-hhHHHHhcCcCc---------cceEEEECCCCcEEeccc
Q 014225          280 QTSFESYFGTMPWLALPFGDPT-IKELTKYFDVQG---------IPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~v~~---------~P~~~lid~~G~i~~~~~  331 (428)
                      .+.+++|.++++.-+||++.|. ...+++.|++..         .|++||||++|+|++.+.
T Consensus        86 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~  147 (165)
T 1q98_A           86 PFAQARFCGAEGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQL  147 (165)
T ss_dssp             HHHHTTCTTTTTCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEE
T ss_pred             HHHHHHHHHHcCCCceEEeeccccchHHHHhCceecccccCCccceeEEEEcCCCEEEEEEe
Confidence            6778888887763268888786 789999999864         599999999999999864

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=99.82  E-value=7.6e-20  Score=166.31  Aligned_cols=120  Identities=12%  Similarity=0.083  Sum_probs=96.4

Q ss_pred             hccCCCCccc-CCC-CCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC-
Q 014225          202 LTNHDRGYLL-GHP-PDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-  278 (428)
Q Consensus       202 ~g~~~p~f~l-~~~-g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~-  278 (428)
                      .+.++|+|++ +.+ |+ .+++++++||+|||+|||+|||+|++++|.|++++++|+++         +++||+|++|. 
T Consensus        22 ~~~~~p~f~l~~~~~G~-~v~l~~~~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~---------g~~vv~v~~d~~   91 (208)
T 2f8a_A           22 SMQSVYAFSARPLAGGE-PVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPR---------GLVVLGFPCNQF   91 (208)
T ss_dssp             CCCCGGGCEECBTTCSS-CEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG---------TEEEEEEECCCS
T ss_pred             hcCccCceEeeeCCCCC-CccHHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHccCC---------CeEEEEEECCcc
Confidence            4678999999 999 99 99999999999999999999999999999999999999877         79999999972 


Q ss_pred             ------CHHHHHHHHh------cCCccccccCCcc--hh--------HHHHhc-------------------------Cc
Q 014225          279 ------DQTSFESYFG------TMPWLALPFGDPT--IK--------ELTKYF-------------------------DV  311 (428)
Q Consensus       279 ------~~~~~~~~~~------~~~~~~~~~~~d~--~~--------~~~~~~-------------------------~v  311 (428)
                            +.+++++|++      +.+ ++||+..+.  +.        .+...+                         ++
T Consensus        92 ~~~e~d~~~~i~~f~~~~~~~~~~~-~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  170 (208)
T 2f8a_A           92 GHQENAKNEEILNSLKYVRPGGGFE-PNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDV  170 (208)
T ss_dssp             TTTTCSCHHHHHHHHHHTSSCTTCC-CSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCC
T ss_pred             cccCCCCHHHHHHHHHhcccccccc-cceEEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCcc
Confidence                  4577888887      444 667765321  11        111122                         25


Q ss_pred             CccceEEEECCCCcEEecccc
Q 014225          312 QGIPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       312 ~~~P~~~lid~~G~i~~~~~~  332 (428)
                      ...|++||||++|+|+.+..+
T Consensus       171 ~~~p~tflID~~G~i~~~~~g  191 (208)
T 2f8a_A          171 AWNFEKFLVGPDGVPLRRYSR  191 (208)
T ss_dssp             CSTTCEEEECTTSCEEEEECT
T ss_pred             ccCceEEEEcCCCcEEEEeCC
Confidence            667999999999999998643

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.82  E-value=3.8e-20  Score=158.91  Aligned_cols=117  Identities=21%  Similarity=0.401  Sum_probs=103.0

Q ss_pred             ccccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHh
Q 014225           38 LASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRA  116 (428)
Q Consensus        38 ~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~  116 (428)
                      +|..+|+| |.+.+|+.+++++++||+++|+||++||++|+.++|.|+++++++++.+  +.+++|++|.+.+.++++++
T Consensus         2 ~G~~~p~~~l~~~~g~~~~l~~~~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~--v~vv~v~~d~~~~~~~~~~~   79 (151)
T 2f9s_A            2 EGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG--VEIVAVNVGESKIAVHNFMK   79 (151)
T ss_dssp             CCEECCCCEEECTTCCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT--EEEEEEEESCCHHHHHHHHH
T ss_pred             CCCcCCcceeEcCCCCEEEHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCC--eEEEEEECCCCHHHHHHHHH
Confidence            58889999 9999999999999999999999999999999999999999999998876  99999999999899999999


Q ss_pred             cCCCceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          117 CMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       117 ~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      ++++....+.+.+  ..+.+.|++.++|++++||+   +|+++..
T Consensus        80 ~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~---~G~i~~~  119 (151)
T 2f9s_A           80 SYGVNFPVVLDTD--RQVLDAYDVSPLPTTFLINP---EGKVVKV  119 (151)
T ss_dssp             HHTCCSCEEEETT--SHHHHHTTCCSSCEEEEECT---TSEEEEE
T ss_pred             HcCCCceEEECCc--hHHHHhcCCCCCCeEEEECC---CCcEEEE
Confidence            8764322122332  68899999999999999999   9988765

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=99.71  E-value=6.7e-22  Score=171.52  Aligned_cols=119  Identities=27%  Similarity=0.403  Sum_probs=107.6

Q ss_pred             hccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHH-HHHHHH-hhhhhcCCCCCCEEEEEEEcCC
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLS-IYQKIK-QNLVEKGDALEDFEVVFVSTDR  278 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~-l~~~~~-~~~~~~~~~~~~~~iv~is~d~  278 (428)
                      +|.++|+|++ +.+|+ .+++++++||+++|+||++||++|+.++|.|.+ ++++++ ..         ++.+++|++|.
T Consensus         9 ~g~~~p~f~l~~~~g~-~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~---------~~~vv~v~~d~   78 (159)
T 2ls5_A            9 IGEMAPDFTITLTDGK-QVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNA---------DFALIGIDRDE   78 (159)
Confidence            5889999999 99999 999999999999999999999999999999998 988887 44         79999999998


Q ss_pred             CHHHHHHHHhcCCccccccCCcchhHHHHhcC--cCccceEEEECCCCcEEeccc
Q 014225          279 DQTSFESYFGTMPWLALPFGDPTIKELTKYFD--VQGIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--v~~~P~~~lid~~G~i~~~~~  331 (428)
                      +.+.+++|...++ +.+|+..|....+.+.|+  +.++|+++|||++|+++.+..
T Consensus        79 ~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~~~  132 (159)
T 2ls5_A           79 PLEKVLAFAKSTG-VTYPLGLDPGADIFAKYALRDAGITRNVLIDREGKIVKLTR  132 (159)
Confidence            7778888888777 588999998999999999  567999999999999998753

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=99.82  E-value=1.6e-20  Score=165.24  Aligned_cols=116  Identities=14%  Similarity=0.109  Sum_probs=103.0

Q ss_pred             hccCCCCccc-CCCCCceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD  279 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~  279 (428)
                      +|.++|+|++ +.+|+ .+++++++||+++|+|| ++|||+|..++|.|++++++|  .         +++||+|++| +
T Consensus        23 ~g~~~P~f~l~~~~G~-~~~l~~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~--~---------~v~vv~Is~d-~   89 (171)
T 2yzh_A           23 VGDRAPEAVVVTKDLQ-EKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGM--E---------GVDVTVVSMD-L   89 (171)
T ss_dssp             TTSBCCCEEEEETTSC-EEEESSCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--T---------TEEEEEEESS-C
T ss_pred             CCCcCCceEEECCCCC-EeeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHc--C---------CceEEEEeCC-C
Confidence            5889999999 99999 99999999999999999 799999999999999999988  4         6999999998 5


Q ss_pred             HHHHHHHHhcCCccccccCCc-chhHHHHhcCcCc---------cceEEEECCCCcEEeccc
Q 014225          280 QTSFESYFGTMPWLALPFGDP-TIKELTKYFDVQG---------IPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~v~~---------~P~~~lid~~G~i~~~~~  331 (428)
                      .+..++|.++++.-++|+..| ....+ +.|++..         +|++||||++|+|++++.
T Consensus        90 ~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~  150 (171)
T 2yzh_A           90 PFAQKRFCESFNIQNVTVASDFRYRDM-EKYGVLIGEGALKGILARAVFIIDKEGKVAYVQL  150 (171)
T ss_dssp             HHHHHHHHHHTTCCSSEEEECTTTCGG-GGGTCBBCSSTTTTSBCCEEEEECTTSBEEEEEE
T ss_pred             HHHHHHHHHHcCCCCeEEeecCccCcH-HHhCCEecccccCCceeeEEEEEcCCCeEEEEEe
Confidence            677888888877337888888 67888 9999862         699999999999999864

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=99.82  E-value=2.8e-20  Score=166.09  Aligned_cols=141  Identities=17%  Similarity=0.192  Sum_probs=116.7

Q ss_pred             hccCCCCccc-CCCCC---ceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEc
Q 014225          202 LTNHDRGYLL-GHPPD---EKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST  276 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~---~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~  276 (428)
                      +|.++|+|++ +.+|.   +.+++++++||++||+|| ++||++|+.++|.|.+++++|+++         ++.|++|++
T Consensus         3 ~G~~~P~f~l~~~~g~~~~~~~~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~---------~v~vv~vs~   73 (187)
T 1we0_A            3 IGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKL---------GVEVYSVST   73 (187)
T ss_dssp             TTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHT---------TEEEEEEES
T ss_pred             CCCcCCCeEEeccCCCccceEecHHHHCCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHc---------CCEEEEEEC
Confidence            5889999999 77765   279999999999999999 999999999999999999999876         799999999


Q ss_pred             CCCHHHHHHHHhcCC---ccccccCCcchhHHHHhcCcC------ccceEEEECCCCcEEeccccchhhcccccCCCCCh
Q 014225          277 DRDQTSFESYFGTMP---WLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTE  347 (428)
Q Consensus       277 d~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~  347 (428)
                      |. .+..++|.+.+.   .++||+..|....+++.|++.      ++|+++|||++|+|+.+..+..       ..   +
T Consensus        74 d~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~g~~~P~~~lid~~G~i~~~~~g~~-------~~---~  142 (187)
T 1we0_A           74 DT-HFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIEINAD-------GI---G  142 (187)
T ss_dssp             SC-HHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECT-------TS---C
T ss_pred             CC-HHHHHHHHHHhccccCCCceEEECCchHHHHHhCCCcCCCCceeeEEEEECCCCeEEEEEecCC-------CC---C
Confidence            85 677888888773   367888888888999999998      9999999999999999854321       10   1


Q ss_pred             HHHHHHHHHHHHHHh
Q 014225          348 AKLEFLEKQMEEEAK  362 (428)
Q Consensus       348 ~~~~~L~~~l~~~~~  362 (428)
                      ...++|.+.|++++.
T Consensus       143 ~~~~~l~~~l~~l~~  157 (187)
T 1we0_A          143 RDASTLINKVKAAQY  157 (187)
T ss_dssp             CCTTHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhh
Confidence            123566667766654

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.82  E-value=7.9e-20  Score=156.87  Aligned_cols=117  Identities=24%  Similarity=0.337  Sum_probs=104.7

Q ss_pred             cccccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHH
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYR  115 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~  115 (428)
                      .+|..+|+| |.+ +|+++++++++||+++|+||++||++|+.++|.|+++++++++.+  +.+++|++|.+.+.+++++
T Consensus         4 ~~G~~~P~f~l~~-~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~--~~~v~v~~d~~~~~~~~~~   80 (152)
T 3gl3_A            4 DKGDKAPDFALPG-KTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKG--FQVVAVNLDAKTGDAMKFL   80 (152)
T ss_dssp             CTTSBCCCCEEEB-SSSEEEGGGGTTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGT--EEEEEEECCSSHHHHHHHH
T ss_pred             CCCCcCCceEeeC-CCCeEeHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCC--eEEEEEECCCCHHHHHHHH
Confidence            368999999 999 999999999999999999999999999999999999999999987  9999999999999999999


Q ss_pred             hcCCCceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          116 ACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       116 ~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +++++....+.+.+  ..+.+.|++.++|+++|||+   +|+++..
T Consensus        81 ~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~---~G~i~~~  121 (152)
T 3gl3_A           81 AQVPAEFTVAFDPK--GQTPRLYGVKGMPTSFLIDR---NGKVLLQ  121 (152)
T ss_dssp             HHSCCCSEEEECTT--CHHHHHTTCCSSSEEEEECT---TSBEEEE
T ss_pred             HHcCCCCceeECCc--chhHHHcCCCCCCeEEEECC---CCCEEEE
Confidence            98875333333443  68999999999999999999   9998865

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=99.82  E-value=3e-20  Score=161.39  Aligned_cols=138  Identities=16%  Similarity=0.159  Sum_probs=115.3

Q ss_pred             hhccCCCCccc-CCCCCceecccccCCc--EEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEc
Q 014225          201 LLTNHDRGYLL-GHPPDEKVPVSSLVGK--TVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST  276 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g~~~v~l~~~~gk--~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~  276 (428)
                      .+|.++|+|++ +.+|+ .+++++++||  ++||+|| ++|||+|..++|.|.+++++|+++         + +|++|++
T Consensus         8 ~~G~~~P~f~l~~~~G~-~v~l~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~---------~-~vv~is~   76 (159)
T 2a4v_A            8 EIGDPIPDLSLLNEDND-SISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEY---------A-AVFGLSA   76 (159)
T ss_dssp             CTTCBCCSCEEECTTSC-EEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTT---------C-EEEEEES
T ss_pred             CCCCCCCCeEEECCCCC-EEeHHHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhC---------C-cEEEEeC
Confidence            36899999999 99999 9999999987  8999997 899999999999999999999876         6 9999999


Q ss_pred             CCCHHHHHHHHhcCCccccccCCcchhHHHHhcCcCccc------eEEEECCCCcEEeccccchhhcccccCCCCChHHH
Q 014225          277 DRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIP------CLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKL  350 (428)
Q Consensus       277 d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P------~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~  350 (428)
                      | +.+..++|.++++ ++||++.|....+.+.||+...|      ++||| ++|+|++++.+.           ......
T Consensus        77 d-~~~~~~~~~~~~~-~~~~~l~D~~~~~~~~~gv~~~p~~g~~~~~~li-~~G~i~~~~~g~-----------~~~~~~  142 (159)
T 2a4v_A           77 D-SVTSQKKFQSKQN-LPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIF-VDGKLKFKRVKI-----------SPEVSV  142 (159)
T ss_dssp             C-CHHHHHHHHHHHT-CSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEE-ETTEEEEEEESC-----------CHHHHH
T ss_pred             C-CHHHHHHHHHHhC-CCceEEECCccHHHHHhCCcccccCCccceEEEE-cCCEEEEEEccC-----------CccccH
Confidence            9 6778888888776 57888888888999999999988      89999 999999985331           122344


Q ss_pred             HHHHHHHHHHHhc
Q 014225          351 EFLEKQMEEEAKN  363 (428)
Q Consensus       351 ~~L~~~l~~~~~~  363 (428)
                      +.+.+.|.++++.
T Consensus       143 ~~~~~~l~~~l~~  155 (159)
T 2a4v_A          143 NDAKKEVLEVAEK  155 (159)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            5555666555553

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=99.82  E-value=7.2e-20  Score=165.60  Aligned_cols=140  Identities=16%  Similarity=0.147  Sum_probs=117.0

Q ss_pred             hhccCCCCccc-CC--CC--CceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEE
Q 014225          201 LLTNHDRGYLL-GH--PP--DEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV  274 (428)
Q Consensus       201 ~~g~~~p~f~l-~~--~g--~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~i  274 (428)
                      .+|.++|+|++ +.  +|  + .+++++++||++||+|| ++||++|..++|.|.+++++|++.         +++||+|
T Consensus         7 ~~G~~aP~f~l~~~~~~g~~~-~v~l~~~~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~---------~v~vi~I   76 (202)
T 1uul_A            7 EDLHPAPDFNETALMPNGTFK-KVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDI---------GCEVLAC   76 (202)
T ss_dssp             CTTSBCCCCEEEEECTTSCEE-EEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTT---------TEEEEEE
T ss_pred             cCCCcCCCcEeeeeecCCCcc-EEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC---------CCEEEEE
Confidence            36999999999 76  78  7 99999999999999999 999999999999999999999876         7999999


Q ss_pred             EcCCCHHHHHHHHhcC----C--ccccccCCcchhHHHHhcCcC------ccceEEEECCCCcEEeccccchhhcccccC
Q 014225          275 STDRDQTSFESYFGTM----P--WLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQGRNLINLYQENA  342 (428)
Q Consensus       275 s~d~~~~~~~~~~~~~----~--~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~  342 (428)
                      ++| +.+..++|.+..    +  .++||+..|....+++.|++.      ++|++||||++|+|+++..+..       .
T Consensus        77 s~D-~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~-------~  148 (202)
T 1uul_A           77 SMD-SEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDL-------P  148 (202)
T ss_dssp             ESS-CHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECT-------T
T ss_pred             eCC-CHHHHHHHHHHHHhhCCCCCCceeEEECCchHHHHHcCCccCCCCceeeEEEEECCCCEEEEEEeCCC-------C
Confidence            998 566788888876    1  478888888889999999999      9999999999999999853321       1


Q ss_pred             CCCChHHHHHHHHHHHHHH
Q 014225          343 YPFTEAKLEFLEKQMEEEA  361 (428)
Q Consensus       343 ~p~~~~~~~~L~~~l~~~~  361 (428)
                      ..   ...++|.+.|+++.
T Consensus       149 ~~---~~~~ell~~l~~l~  164 (202)
T 1uul_A          149 VG---RDVDEALRLVKAFQ  164 (202)
T ss_dssp             BC---CCHHHHHHHHHHHH
T ss_pred             CC---CCHHHHHHHHHHhh
Confidence            11   23466666676655

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=99.82  E-value=1.5e-19  Score=158.31  Aligned_cols=137  Identities=17%  Similarity=0.291  Sum_probs=110.7

Q ss_pred             CCccc-CCCCCceecccccCCcEEEEEEeccCChh-HHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC---CHH
Q 014225          207 RGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIP-CEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR---DQT  281 (428)
Q Consensus       207 p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~-C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~---~~~  281 (428)
                      |+|++ +.+|+ .+++++++||++||+||++||++ |+.++|.|++++++|++.     ....+++||+|++|.   +.+
T Consensus         7 p~f~l~~~~G~-~~~l~~~~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~-----~~~~~v~vv~is~d~~~d~~~   80 (171)
T 2rli_A            7 GDFHLLDHRGR-ARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAE-----PGLPPVQPVFITVDPERDDVE   80 (171)
T ss_dssp             SCCEEEETTSC-EEETTTTTTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHS-----TTSCCEEEEEEESCSTTCCHH
T ss_pred             CCeEEEeCCCC-EEeHHHhCCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhc-----cCCCceEEEEEEECCCCCCHH
Confidence            89999 99999 99999999999999999999998 999999999999999751     001379999999984   578


Q ss_pred             HHHHHHhcCCccccccCCc---chhHHHHhcCcCccc---------------eEEEECCCCcEEeccccchhhcccccCC
Q 014225          282 SFESYFGTMPWLALPFGDP---TIKELTKYFDVQGIP---------------CLVIIGPEGKTVTKQGRNLINLYQENAY  343 (428)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~v~~~P---------------~~~lid~~G~i~~~~~~~~~~~~g~~~~  343 (428)
                      .+++|.++++ ..++++.+   ....+++.|++..+|               ++||||++|+|+.+..+.          
T Consensus        81 ~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~----------  149 (171)
T 2rli_A           81 AMARYVQDFH-PRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRS----------  149 (171)
T ss_dssp             HHHHHHHTTC-TTCCEEECCHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESS----------
T ss_pred             HHHHHHHHcC-CCeEEEeCCHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCC----------
Confidence            8999998876 45555443   345789999999888               999999999999975431          


Q ss_pred             CCChHHHHHHHHHHHHHHhcC
Q 014225          344 PFTEAKLEFLEKQMEEEAKNL  364 (428)
Q Consensus       344 p~~~~~~~~L~~~l~~~~~~~  364 (428)
                       .+   .++|.+.|+++++..
T Consensus       150 -~~---~~~l~~~l~~ll~~~  166 (171)
T 2rli_A          150 -RS---AEQISDSVRRHMAAF  166 (171)
T ss_dssp             -CC---HHHHHHHHHHHHHHH
T ss_pred             -CC---HHHHHHHHHHHHHHH
Confidence             22   256677777776643

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.81  E-value=2e-20  Score=162.10  Aligned_cols=121  Identities=16%  Similarity=0.153  Sum_probs=101.5

Q ss_pred             ccccccccCc-ccc-CCCCEEecccCCCCEEEEEEecCCChhhhhh-HHHHHHHHHHHhcCCCcEEEEEEecC------C
Q 014225           36 SLLASKDRDY-LLN-QHGTQVKVSDLEGKVTALYFSANWYPPCGNF-TGVLVDVYEELRNNGSDFEVVFVSSD------E  106 (428)
Q Consensus        36 ~~~g~~~pdf-l~~-~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~-~p~l~~l~~~~~~~~~~~~ii~vs~D------~  106 (428)
                      ++.|.++|+| +.+ .+|+++++++++||+++|+||++||++|+.+ +|.|++++++|++++  +.+++|++|      .
T Consensus         3 ~~~g~~~p~~~~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~--v~~v~v~~~~~~~~~~   80 (160)
T 3lor_A            3 SLDNAPLLELDVQEWVNHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQ--VQVIGLHSVFEHHDVM   80 (160)
T ss_dssp             -CTTCCBCCCCEEEESSSCCCCHHHHTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTT--EEEEEEECCCSCGGGS
T ss_pred             ccCCCcCCCcccccccCCCccCHHHhCCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCC--cEEEEEeccccccccC
Confidence            4578999999 888 8999999999999999999999999999995 999999999998876  999999984      6


Q ss_pred             ChHHHHHHHhcCCCceeccCChHH----HHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          107 DLNAFNNYRACMPWLAVPYSDLET----KKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~d~~~----~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.+.+++|++++++......+...    ...+.+.|++.++|+++|||+   +|+++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~  136 (160)
T 3lor_A           81 TPEALKVFIDEFGIKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADR---KGRIRQV  136 (160)
T ss_dssp             CHHHHHHHHHHTTCCSCEEEECCCTTCSSCHHHHHTTCCSSSEEEEECT---TSBEEEE
T ss_pred             CHHHHHHHHHHcCCCCcEEECCccccchhhhHHHhcccCccceEEEECC---CCcEEEE
Confidence            788899999987743221112221    013899999999999999999   9998865

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=99.81  E-value=5.6e-20  Score=165.70  Aligned_cols=141  Identities=15%  Similarity=0.182  Sum_probs=117.2

Q ss_pred             hccCCCCccc-CC--CCC--ceeccccc-CCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEE
Q 014225          202 LTNHDRGYLL-GH--PPD--EKVPVSSL-VGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV  274 (428)
Q Consensus       202 ~g~~~p~f~l-~~--~g~--~~v~l~~~-~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~i  274 (428)
                      +|.++|+|++ +.  +|+  +.++++++ +||++||+|| ++||++|+.++|.|.+++++|++.         +++|++|
T Consensus         3 ~G~~~P~f~l~~~~~~G~~~~~v~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~---------~v~vv~I   73 (198)
T 1zof_A            3 VTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEK---------GFNVIGV   73 (198)
T ss_dssp             TTSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHT---------TEEEEEE
T ss_pred             CCCcCCceEeecccCCCcccceEEHHHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHc---------CCEEEEE
Confidence            5899999999 87  774  37999999 9999999999 999999999999999999999876         7999999


Q ss_pred             EcCCCHHHHHHHHhcC------CccccccCCcchhHHHHhcCcC-----ccceEEEECCCCcEEeccccchhhcccccCC
Q 014225          275 STDRDQTSFESYFGTM------PWLALPFGDPTIKELTKYFDVQ-----GIPCLVIIGPEGKTVTKQGRNLINLYQENAY  343 (428)
Q Consensus       275 s~d~~~~~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~  343 (428)
                      ++| +.+..++|.+..      ..++||+..|....+.+.|++.     ++|+++|||++|+|+.+..+..         
T Consensus        74 s~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~---------  143 (198)
T 1zof_A           74 SID-SEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVINDL---------  143 (198)
T ss_dssp             ESS-CHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEETTTEECEEEEEEETTTEEEEEEEESS---------
T ss_pred             ECC-CHHHHHHHHHhhhhcccccCceeEEEECCchHHHHHhCCcccCCcccceEEEECCCCEEEEEEecCC---------
Confidence            999 467888888872      3367888888889999999999     9999999999999999853321         


Q ss_pred             CCChHHHHHHHHHHHHHHh
Q 014225          344 PFTEAKLEFLEKQMEEEAK  362 (428)
Q Consensus       344 p~~~~~~~~L~~~l~~~~~  362 (428)
                      + .....++|.+.|+++..
T Consensus       144 ~-~~~~~~~l~~~l~~l~~  161 (198)
T 1zof_A          144 P-LGRNADEMLRMVDALLH  161 (198)
T ss_dssp             S-CCCHHHHHHHHHHHHHH
T ss_pred             C-CCCCHHHHHHHHHHHHH
Confidence            1 11235677777776653

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.81  E-value=6.6e-20  Score=179.09  Aligned_cols=120  Identities=18%  Similarity=0.208  Sum_probs=109.8

Q ss_pred             hhccCCCCcc-----c-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEE
Q 014225          201 LLTNHDRGYL-----L-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV  274 (428)
Q Consensus       201 ~~g~~~p~f~-----l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~i  274 (428)
                      .+|.++|+|+     + +.+|+ .+++++++||+|||+||++||++|+.++|.|.+++++|+++         ++.||+|
T Consensus        52 ~vG~~aPdF~~~~~wL~d~dG~-~vsLsdl~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~---------~v~vi~V  121 (352)
T 2hyx_A           52 ESCGTAPDLKGITGWLNTPGNK-PIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDS---------GLAVIGV  121 (352)
T ss_dssp             CCCCBCCCCCSCCEEESSGGGC-CCCGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG---------TEEEEEE
T ss_pred             CCCCcCCCccccccccCCCCCC-EEcHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcC---------CeEEEEE
Confidence            3688999999     8 99999 99999999999999999999999999999999999999876         7999999


Q ss_pred             EcC-----CCHHHHHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEeccc
Q 014225          275 STD-----RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       275 s~d-----~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~  331 (428)
                      ++|     .+.+.+++|+++++ +.||+..|....+++.|+|.++|+++|||++|+|+.+..
T Consensus       122 s~d~~~~~d~~~~~~~~~~~~~-l~fpv~~D~~~~l~~~ygV~~~Pt~~lID~~G~Iv~~~~  182 (352)
T 2hyx_A          122 HTPEYAFEKVPGNVAKGAANLG-ISYPIALDNNYATWTNYRNRYWPAEYLIDATGTVRHIKF  182 (352)
T ss_dssp             ECCSSGGGGCHHHHHHHHHHHT-CCSCEEECTTSHHHHHTTCCEESEEEEECTTSBEEEEEE
T ss_pred             ECCcccccCCHHHHHHHHHHcC-CCccEEeCCcHHHHHHcCCCccCEEEEEeCCCeEEEEEc
Confidence            986     46788999998877 678888888889999999999999999999999998853

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=99.81  E-value=6.9e-20  Score=170.20  Aligned_cols=120  Identities=16%  Similarity=0.180  Sum_probs=105.9

Q ss_pred             hhccCCCCccc----CCCCCceecccccCCcEEEEEEec-cCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEE
Q 014225          201 LLTNHDRGYLL----GHPPDEKVPVSSLVGKTVGLYFSA-RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS  275 (428)
Q Consensus       201 ~~g~~~p~f~l----~~~g~~~v~l~~~~gk~vll~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is  275 (428)
                      .+|.++|+|++    +.+|+ .+++++++||++||+||+ +||++|..++|.|.+++++|+++         +++||+||
T Consensus        49 ~vG~~aPdF~l~~~~d~~G~-~vsLsd~~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~---------gv~vv~Is  118 (240)
T 3qpm_A           49 KISKPAPQWEGTAVINGEFK-ELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAI---------NTEVVACS  118 (240)
T ss_dssp             CTTSBCCCCEEEEEETTEEE-EEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTT---------TEEEEEEE
T ss_pred             CCCCCCCCcEeeeeeCCCCc-EEEHHHhCCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHC---------CCEEEEEE
Confidence            47999999996    44567 999999999999999998 99999999999999999999876         89999999


Q ss_pred             cCCCHHHHHHHHhcC------CccccccCCcchhHHHHhcCcC------ccceEEEECCCCcEEeccc
Q 014225          276 TDRDQTSFESYFGTM------PWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       276 ~d~~~~~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~  331 (428)
                      +| +.+..++|....      ..++||++.|....+++.||+.      .+|++||||++|+|+++..
T Consensus       119 ~D-~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~~~~g~~~p~~flID~~G~I~~~~~  185 (240)
T 3qpm_A          119 VD-SQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLRGLFIIDEKGVLRQITM  185 (240)
T ss_dssp             SS-CHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEE
T ss_pred             CC-CHHHHHHHHHHHHhhcCCCCCceeEEeCchHHHHHHhCCccccCCCccceEEEEcCCCeEEEEEe
Confidence            98 456777777765      2478999999889999999997      7899999999999999853

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=99.81  E-value=5.3e-20  Score=163.33  Aligned_cols=123  Identities=14%  Similarity=0.170  Sum_probs=99.1

Q ss_pred             hhhhccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC
Q 014225          199 INLLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD  277 (428)
Q Consensus       199 ~~~~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d  277 (428)
                      .+..|..+|+|++ +.+|+ .+++++++||+|||+||++|||+|+.++|.|.+++++|+++         ++.|++|++|
T Consensus        11 ~~~~~~~~p~f~l~d~~G~-~v~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~---------~~~vi~is~d   80 (180)
T 3kij_A           11 LKPKINSFYAFEVKDAKGR-TVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPS---------HFSVLAFPCN   80 (180)
T ss_dssp             CCCCCCCGGGCEEEBTTSC-EEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTT---------SEEEEEEECC
T ss_pred             hcCCcCcccceEEecCCCC-EecHHHcCCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccC---------CeEEEEEECC
Confidence            3456889999999 99999 99999999999999999999999999999999999999876         7999999987


Q ss_pred             C-------CHHHHHHHHhc-CCccccccCC-----cchh-HHHHhc--CcCccce----EEEECCCCcEEecccc
Q 014225          278 R-------DQTSFESYFGT-MPWLALPFGD-----PTIK-ELTKYF--DVQGIPC----LVIIGPEGKTVTKQGR  332 (428)
Q Consensus       278 ~-------~~~~~~~~~~~-~~~~~~~~~~-----d~~~-~~~~~~--~v~~~P~----~~lid~~G~i~~~~~~  332 (428)
                      .       +.+++++|++. .+ +.||+..     +... .+...+  .+.++|+    +||||++|+|+.+..+
T Consensus        81 ~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~~g  154 (180)
T 3kij_A           81 QFGESEPRPSKEVESFARKNYG-VTFPIFHKIKILGSEGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRP  154 (180)
T ss_dssp             CSTTCCCSCHHHHHHHHHHHHC-CCSCBBCCCCCSSTTCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEECT
T ss_pred             ccccCCCCCHHHHHHHHHHhcC-CCCceeeeeeccCccccHHHHHHHhcCCCCccccceEEEECCCCCEEEEECC
Confidence            5       77889999887 55 5566532     1111 111111  1246888    9999999999988644

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.81  E-value=3.5e-20  Score=160.29  Aligned_cols=119  Identities=15%  Similarity=0.166  Sum_probs=100.0

Q ss_pred             ccccccCc-ccc--CCCCEEecccCCCCEEEEEEecCCChhhhhh-HHHHHHHHHHHhcCCCcEEEEEEecC------CC
Q 014225           38 LASKDRDY-LLN--QHGTQVKVSDLEGKVTALYFSANWYPPCGNF-TGVLVDVYEELRNNGSDFEVVFVSSD------ED  107 (428)
Q Consensus        38 ~g~~~pdf-l~~--~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~-~p~l~~l~~~~~~~~~~~~ii~vs~D------~~  107 (428)
                      .|..+|+| |.+  .+|+++++++++||+++|+||++||++|+.+ +|.|++++++|++.+  +.+++|++|      .+
T Consensus         2 ~g~~aP~f~l~~~~~~g~~~~l~~~~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~--v~~v~v~~~~~~~~~~~   79 (158)
T 3eyt_A            2 NAMKAPELQIQQWFNSATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDK--VAVLGLHTVFEHHEAMT   79 (158)
T ss_dssp             CCEECCCCCEEEEESCSSCCCTGGGTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTT--EEEEEEECCCSCGGGSC
T ss_pred             CCCcCCCceehhhhcCCCccCHHHhCCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCC--EEEEEEEecccccccCC
Confidence            37889999 888  4889999999999999999999999999997 999999999998776  999999984      57


Q ss_pred             hHHHHHHHhcCCCceeccCChHHH---HHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          108 LNAFNNYRACMPWLAVPYSDLETK---KALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~d~~~~---~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      .+.+++|++++++....+.+....   ..+++.|++.++|+++|||+   +|+++..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~  133 (158)
T 3eyt_A           80 PISLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLIDK---AGDLRAH  133 (158)
T ss_dssp             HHHHHHHHHHTTCCSCEEEECCCSSSSCHHHHHTTCCSSSEEEEECT---TSEEEEE
T ss_pred             HHHHHHHHHHcCCCceEEEcCccchhhHHHHHHcCCCCCCEEEEECC---CCCEEEE
Confidence            788999999877532222232210   16899999999999999999   9998765

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=99.81  E-value=7.2e-21  Score=165.26  Aligned_cols=117  Identities=18%  Similarity=0.235  Sum_probs=94.6

Q ss_pred             ccccccCc-cccCCCCEEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHH
Q 014225           38 LASKDRDY-LLNQHGTQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYR  115 (428)
Q Consensus        38 ~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~  115 (428)
                      +|+++||| |.+.+|++++|++++||+++|+|| ++||++|+.++|.|+++++++++.+  +++++||.|. .+..++|.
T Consensus         6 vG~~aPdF~l~~~~G~~~~l~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~--~~~v~vs~d~-~~~~~~~~   82 (157)
T 4g2e_A            6 IGELAPDFELPDTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVN--AVVLGISVDP-PFSNKAFK   82 (157)
T ss_dssp             TTSBCCCCEEEBTTSCEEEGGGGTTSCEEEEECSCTTCCC------CCSCGGGGGGGCS--SEEEEEESSC-HHHHHHHH
T ss_pred             CCCCCcCeEeECCCCCEEeHHHHCCCeEEEEecCCCCCCccccchhhcccccccccccC--ceEeeecccc-hhHHHHHH
Confidence            69999999 999999999999999999999999 9999999999999999999999887  9999999975 55678888


Q ss_pred             hcCCCceeccCChHHHHHHHhhcCCC-----------CCceEEEEcCCCCCCCccccc
Q 014225          116 ACMPWLAVPYSDLETKKALNRKFDIE-----------GIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       116 ~~~~~~~~~~~d~~~~~~l~~~~~v~-----------~~P~~~lid~~~~dG~i~~~~  162 (428)
                      +++++.+...+|.+  ..+++.||+.           ..|+++|||+   +|+|++..
T Consensus        83 ~~~~~~~p~l~D~~--~~v~~~ygv~~~~~~~~~~~~~~p~tflID~---~G~I~~~~  135 (157)
T 4g2e_A           83 EHNKLNFTILSDYN--REVVKKYNVAWEFPALPGYVLAKRAVFVIDK---EGKVRYKW  135 (157)
T ss_dssp             HHTTCCSEEEECTT--SHHHHHTTCEEECTTSTTCEEECEEEEEECT---TSBEEEEE
T ss_pred             HHcCCcEEEEEcCC--cHHHHHcCCccccccCCCcceeeeeEEEECC---CCEEEEEE
Confidence            88765322233544  7899999873           4688999999   99998664

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=99.81  E-value=3.9e-20  Score=164.95  Aligned_cols=120  Identities=9%  Similarity=0.061  Sum_probs=98.2

Q ss_pred             hccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC--
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR--  278 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~--  278 (428)
                      +|.++|+|++ +.+|+ .+++++++||++||+||++|||+|+.++|.|++++++|+++         +++|++|++|.  
T Consensus        25 ~g~~~p~f~l~~~~G~-~v~l~~~~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~---------~v~vv~is~d~~~   94 (185)
T 2gs3_A           25 CARSMHEFSAKDIDGH-MVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAEC---------GLRILAFPCNQFG   94 (185)
T ss_dssp             GCCCGGGCEEEBTTSC-EEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG---------TEEEEEEECCTTT
T ss_pred             CCCCcCCceeEcCCCC-EeeHHHcCCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcC---------CeEEEEEECcccC
Confidence            5889999999 99999 99999999999999999999999999999999999999876         79999999873  


Q ss_pred             -----CHHHHHHHHhcCCccccccCC--cchhH----HHHhc-------Cc-----CccceEEEECCCCcEEecccc
Q 014225          279 -----DQTSFESYFGTMPWLALPFGD--PTIKE----LTKYF-------DV-----QGIPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       279 -----~~~~~~~~~~~~~~~~~~~~~--d~~~~----~~~~~-------~v-----~~~P~~~lid~~G~i~~~~~~  332 (428)
                           +.+++++|+++.+ +.||+..  |....    +...+       ++     ..+|++||||++|+|+.+..+
T Consensus        95 ~~~~~~~~~~~~~~~~~~-~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g  170 (185)
T 2gs3_A           95 KQEPGSNEEIKEFAAGYN-VKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGP  170 (185)
T ss_dssp             TCCCSCHHHHHHHHHHTT-CCSEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEECT
T ss_pred             CCCCCCHHHHHHHHHHcC-CCCeeeeeeccCChhhhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEeeCC
Confidence                 4678888888776 4567654  32222    22111       43     346999999999999998543

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.81  E-value=6.4e-20  Score=158.02  Aligned_cols=116  Identities=20%  Similarity=0.327  Sum_probs=102.0

Q ss_pred             hhccCCCCccc-CCCC--------CceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEE
Q 014225          201 LLTNHDRGYLL-GHPP--------DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEV  271 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g--------~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~i  271 (428)
                      .+|.++|+|.+ +.+|        + .+++++++||+++|+||++||++|+.+.|.|.+++++   .         ++.+
T Consensus         9 ~~g~~~p~f~l~~~~g~~~~~~~~~-~~~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~---~---------~v~~   75 (156)
T 1kng_A            9 LIGRPAPQTALPPLEGLQADNVQVP-GLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKD---K---------RFQL   75 (156)
T ss_dssp             ---CBCCCCCBCCCTTCEETTEECC-CBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTC---T---------TSEE
T ss_pred             HhCCCCCCceeeeccCcccccccCc-eechHHhCCCEEEEEEEcccCHhHHHHHHHHHHHHhc---C---------CeEE
Confidence            46999999999 9998        8 9999999999999999999999999999999988765   2         5899


Q ss_pred             EEEEcCCCHHHHHHHHhcCCccccc-cCCcchhHHHHhcCcCccceEEEECCCCcEEecc
Q 014225          272 VFVSTDRDQTSFESYFGTMPWLALP-FGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       272 v~is~d~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      ++|++|.+.+.+++|....+ +.++ +..|....+++.|++.++|+++|||++|+++.+.
T Consensus        76 v~v~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~v~~~P~~~~id~~G~i~~~~  134 (156)
T 1kng_A           76 VGINYKDAADNARRFLGRYG-NPFGRVGVDANGRASIEWGVYGVPETFVVGREGTIVYKL  134 (156)
T ss_dssp             EEEEESCCHHHHHHHHHHHC-CCCSEEEEETTSHHHHHTTCCSSCEEEEECTTSBEEEEE
T ss_pred             EEEECCCCHHHHHHHHHHcC-CCCceeeeCchhHHHHhcCcCccCeEEEEcCCCCEEEEE
Confidence            99999999999999998876 4566 5667778999999999999999999999999874

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=99.81  E-value=3.1e-20  Score=167.86  Aligned_cols=117  Identities=13%  Similarity=0.152  Sum_probs=105.2

Q ss_pred             hccCCCCccc-CCCCCceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD  279 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~  279 (428)
                      +|.++|+|++ +.+|+ .+++++++||+|+|+|| ++||++|..++|.|++++++|  +         +++||+||.| +
T Consensus        54 ~G~~aPdf~l~d~~G~-~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~--~---------~v~vv~Is~D-~  120 (200)
T 3zrd_A           54 IGDKAKDFTLVAKDLS-DVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL--E---------NTVVLCISSD-L  120 (200)
T ss_dssp             TTCBCCCCEEECTTSC-EEEGGGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS--T---------TEEEEEEESS-C
T ss_pred             CCCCCCCeEEECCCCC-EEcHHHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh--C---------CCEEEEEECC-C
Confidence            5899999999 99999 99999999999999999 689999999999999999998  4         6999999998 6


Q ss_pred             HHHHHHHHhcCCccccccCCcc-hhHHHHhcCcC---------ccceEEEECCCCcEEeccc
Q 014225          280 QTSFESYFGTMPWLALPFGDPT-IKELTKYFDVQ---------GIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~v~---------~~P~~~lid~~G~i~~~~~  331 (428)
                      .+.+++|.++.+.-.||+..|. ...+++.||+.         .+|++||||++|+|++++.
T Consensus       121 ~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~ygv~~~~~~~~g~~~p~~~lID~~G~I~~~~~  182 (200)
T 3zrd_A          121 PFAQSRFCGAEGLSNVITLSTLRGADFKQAYGVAITEGPLAGLTARAVVVLDGQDNVIYSEL  182 (200)
T ss_dssp             HHHHTTCTTTTTCTTEEEEETTSCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEE
T ss_pred             HHHHHHHHHHcCCCCceEEecCchHHHHHHhCceeecccCCCccccEEEEECCCCeEEEEEe
Confidence            7788888888763388888888 89999999996         3699999999999999864

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=99.81  E-value=3.9e-20  Score=164.57  Aligned_cols=120  Identities=10%  Similarity=0.095  Sum_probs=99.9

Q ss_pred             hhccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC-
Q 014225          201 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-  278 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~-  278 (428)
                      .+|.++|+|++ +.+|+ .+++++++||++||+||++||++|+.++|.|++++++|+++         +++|++|++|. 
T Consensus        22 ~~g~~~p~f~l~~~~G~-~~~l~~~~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~---------~v~vv~vs~d~~   91 (183)
T 2obi_A           22 RCARSMHEFSAKDIDGH-MVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAEC---------GLRILAFPCNQF   91 (183)
T ss_dssp             GGCCSGGGCEEEBTTSC-EEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG---------TEEEEEEECCCS
T ss_pred             cccCcccceEEEcCCCC-EeeHHHcCCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcC---------CeEEEEEECCCC
Confidence            46999999999 99999 99999999999999999999999999999999999999876         79999999973 


Q ss_pred             ------CHHHHHHHHhcCCccccccCC--cchhH----HHHhc-------C-----cCccceEEEECCCCcEEeccc
Q 014225          279 ------DQTSFESYFGTMPWLALPFGD--PTIKE----LTKYF-------D-----VQGIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       279 ------~~~~~~~~~~~~~~~~~~~~~--d~~~~----~~~~~-------~-----v~~~P~~~lid~~G~i~~~~~  331 (428)
                            +.+++++|.++++ ++||+..  |....    +.+.+       +     +..+|++||||++|+|+.+..
T Consensus        92 ~~~e~~~~~~~~~~~~~~~-~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~  167 (183)
T 2obi_A           92 GKQEPGSNEEIKEFAAGYN-VKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYG  167 (183)
T ss_dssp             TTCCCSCHHHHHHHHHTTT-CCSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEEC
T ss_pred             CCCCCCCHHHHHHHHHHcC-CCceEEeeeccCCcchhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEeC
Confidence                  6788999998876 5677654  33332    22211       4     445799999999999999854

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=99.70  E-value=1.4e-21  Score=165.91  Aligned_cols=122  Identities=33%  Similarity=0.691  Sum_probs=108.3

Q ss_pred             CCCCccc-CCCCCceecccc-cCCc-EEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHH
Q 014225          205 HDRGYLL-GHPPDEKVPVSS-LVGK-TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQT  281 (428)
Q Consensus       205 ~~p~f~l-~~~g~~~v~l~~-~~gk-~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~  281 (428)
                      .+|+|++ +.+|+ .+++++ ++|| +++|+||++||++|+.++|.|.++++++++.       +.++.+++|++|.+.+
T Consensus         3 ~~p~~~l~~~~g~-~~~l~~~~~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~-------~~~~~v~~v~~d~~~~   74 (143)
T 2lus_A            3 FIQGIKLVKKNRC-EVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDD-------SAPFEIIFVSSDRSED   74 (143)
Confidence            4689999 99999 999999 9999 9999999999999999999999999999643       3479999999998888


Q ss_pred             HHHHHHhcC--CccccccCCcchhHHHHhcCcCccceEEEECCCCcEEeccccch
Q 014225          282 SFESYFGTM--PWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNL  334 (428)
Q Consensus       282 ~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~  334 (428)
                      .+++|+..+  +|..+++..+....+++.|+|.++|+++|||++|+++.++++..
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~  129 (143)
T 2lus_A           75 DMFQYMMESHGDWLAIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMNGRGE  129 (143)
Confidence            899998876  46677777777789999999999999999999999999976644

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.81  E-value=2.3e-18  Score=160.34  Aligned_cols=197  Identities=16%  Similarity=0.142  Sum_probs=126.9

Q ss_pred             CCEEEEEEecCC--ChhhhhhHHHHHHHHHHHhc-CCCc--EEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHH
Q 014225           61 GKVTALYFSANW--YPPCGNFTGVLVDVYEELRN-NGSD--FEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN  135 (428)
Q Consensus        61 gk~vlv~F~a~w--C~~C~~~~p~l~~l~~~~~~-~~~~--~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~  135 (428)
                      +++|+|.||++|  |++|+...|.+.++++.+.. +| +  +.++.++.|..                        ..++
T Consensus        25 ~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~-~~~v~~~~vd~d~~------------------------~~~~   79 (243)
T 2hls_A           25 VNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNG-GKLLKLNVYYRESD------------------------SDKF   79 (243)
T ss_dssp             CSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETT-EESEEEEEEETTTT------------------------HHHH
T ss_pred             CCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCC-CceeEEEEecCCcC------------------------HHHH
Confidence            468999999999  99999999999999987522 22 2  55555544322                        7789


Q ss_pred             hhcCCCCCceEEEEcCCCCCCCcccccchhhhhhcccCccccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCcccCCCC
Q 014225          136 RKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPP  215 (428)
Q Consensus       136 ~~~~v~~~P~~~lid~~~~dG~i~~~~~~~~i~~~g~~~~p~t~~~~~~l~~~~~~~~~~~~~~~~~g~~~p~f~l~~~g  215 (428)
                      +.|+|.++|++.++ .    | .....        |.   +........+.....          . +...+.  +  +.
T Consensus        80 ~~~gv~~~Pt~~i~-~----g-~~~~~--------G~---~~~~~l~~fv~~~l~----------~-~~~~~~--l--~~  127 (243)
T 2hls_A           80 SEFKVERVPTVAFL-G----G-EVRWT--------GI---PAGEEIRALVEVIMR----------L-SEDESG--L--ED  127 (243)
T ss_dssp             HHTTCCSSSEEEET-T----T-TEEEE--------SC---CCTTHHHHHHHHHHH----------H-HTTCCC--C--CH
T ss_pred             HhcCCCcCCEEEEE-C----C-ceeEc--------CC---CcHHHHHHHHHHHHh----------c-cCCCCC--C--CH
Confidence            99999999999888 3    3 11111        11   000111111111100          0 001010  1  00


Q ss_pred             CceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCcccc
Q 014225          216 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLAL  295 (428)
Q Consensus       216 ~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~  295 (428)
                      ...-.+.++.|+++++.||++|||+|+.+.|.|++++..++...      .+++.+..|.++..                
T Consensus       128 ~~~~~~~~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~------~~~v~~~~vd~~~~----------------  185 (243)
T 2hls_A          128 ATKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQG------NPVILSEAVEAYEN----------------  185 (243)
T ss_dssp             HHHHHHHHCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTT------CCCEEEEEEETTTC----------------
T ss_pred             HHHHHHHHcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHccccc------CCcEEEEEEECccC----------------
Confidence            00011234668889999999999999999999999999885210      13688888887754                


Q ss_pred             ccCCcchhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHh
Q 014225          296 PFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAK  362 (428)
Q Consensus       296 ~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~  362 (428)
                             .++++.|+|.++||+++   +|++++.+..             +   .++|.+.|.+.+.
T Consensus       186 -------~~~~~~~~V~~vPt~~i---~G~~~~~G~~-------------~---~~~l~~~l~~~~~  226 (243)
T 2hls_A          186 -------PDIADKYGVMSVPSIAI---NGYLVFVGVP-------------Y---EEDFLDYVKSAAE  226 (243)
T ss_dssp             -------HHHHHHTTCCSSSEEEE---TTEEEEESCC-------------C---HHHHHHHHHHHHT
T ss_pred             -------HHHHHHcCCeeeCeEEE---CCEEEEeCCC-------------C---HHHHHHHHHHHhh
Confidence                   57888999999999988   7887644321             1   3567777777765

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=99.81  E-value=1.2e-19  Score=166.39  Aligned_cols=141  Identities=17%  Similarity=0.214  Sum_probs=117.4

Q ss_pred             hhccCCCCccc-C---CCCCceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEE
Q 014225          201 LLTNHDRGYLL-G---HPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS  275 (428)
Q Consensus       201 ~~g~~~p~f~l-~---~~g~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is  275 (428)
                      .+|.++|+|++ +   .+|+ .+++++++||++||+|| ++|||+|+.++|.|.+++++|+++         +++||+|+
T Consensus        28 ~~G~~aP~f~l~~~~~~~g~-~v~l~d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~---------~v~vv~Is   97 (220)
T 1zye_A           28 AVTQHAPYFKGTAVVSGEFK-EISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDV---------NCEVVAVS   97 (220)
T ss_dssp             CTTSBCCCCEEEEECSSSEE-EEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHT---------TEEEEEEE
T ss_pred             cCCCCCCCcEEEeeeCCCCc-EEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC---------CCEEEEEE
Confidence            46999999998 4   4677 99999999999999999 999999999999999999999876         79999999


Q ss_pred             cCCCHHHHHHHHhcC----C--ccccccCCcchhHHHHhcCcC------ccceEEEECCCCcEEeccccchhhcccccCC
Q 014225          276 TDRDQTSFESYFGTM----P--WLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQGRNLINLYQENAY  343 (428)
Q Consensus       276 ~d~~~~~~~~~~~~~----~--~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~  343 (428)
                      +| +.+..++|.+..    +  .++||+..|....+++.|++.      .+|++||||++|+|+++..+..       . 
T Consensus        98 ~D-~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~~ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~-------~-  168 (220)
T 1zye_A           98 VD-SHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDL-------P-  168 (220)
T ss_dssp             SS-CHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECT-------T-
T ss_pred             CC-CHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHHHHhCCeecCCCcccceEEEECCCCEEEEEEecCC-------C-
Confidence            99 566777887765    1  468888888889999999999      9999999999999999853321       1 


Q ss_pred             CCChHHHHHHHHHHHHHHh
Q 014225          344 PFTEAKLEFLEKQMEEEAK  362 (428)
Q Consensus       344 p~~~~~~~~L~~~l~~~~~  362 (428)
                        .....+++.+.|+++..
T Consensus       169 --~~~~~~ell~~l~~l~~  185 (220)
T 1zye_A          169 --VGRSVEETLRLVKAFQF  185 (220)
T ss_dssp             --CCCCHHHHHHHHHHHHH
T ss_pred             --CCCCHHHHHHHHHHhhh
Confidence              11234677777777664

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.81  E-value=9.9e-20  Score=156.61  Aligned_cols=119  Identities=24%  Similarity=0.392  Sum_probs=103.8

Q ss_pred             ccccccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCC-hHHHHH
Q 014225           36 SLLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED-LNAFNN  113 (428)
Q Consensus        36 ~~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~-~~~~~~  113 (428)
                      +.+|..+|+| |.+.+|+++++++++||+++|+||++||++|+.++|.|+++++++++.+  +.+++|++|.+ .+.+++
T Consensus         2 ~~~G~~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~v~v~~d~~~~~~~~~   79 (154)
T 3kcm_A            2 SLEENPAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKP--FRMLCVSIDEGGKVAVEE   79 (154)
T ss_dssp             -CTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSS--EEEEEEECCTTHHHHHHH
T ss_pred             CCCCCCCCCeEEEcCCCCEEehhhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCC--eEEEEEEcCCcchHHHHH
Confidence            3579999999 9999999999999999999999999999999999999999999998876  99999999987 788899


Q ss_pred             HHhcCCCceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          114 YRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       114 ~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +++++++....+.+.+  ..+.+.|++.++|+++|||+   +|+++..
T Consensus        80 ~~~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~---~G~i~~~  122 (154)
T 3kcm_A           80 FFRKTGFTLPVLLDAD--KRVGKLYGTTGVPETFVIDR---HGVILKK  122 (154)
T ss_dssp             HHHHHCCCCCEEECTT--CHHHHHHTCCSBCEEEEECT---TSBEEEE
T ss_pred             HHHHcCCCeeEEecCc--hHHHHHhCCCCCCeEEEECC---CCcEEEE
Confidence            9987664322222433  67999999999999999999   9998765

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.81  E-value=3.2e-20  Score=161.43  Aligned_cols=116  Identities=15%  Similarity=0.249  Sum_probs=102.2

Q ss_pred             ccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC----
Q 014225          203 TNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD----  277 (428)
Q Consensus       203 g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d----  277 (428)
                      +..+|  .+ +.+|+ .+++++++||+++|+||++||++|+.++|.|.+++++|+..         ++.||+|++|    
T Consensus        17 ~~~~p--~l~~~~g~-~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~---------~~~vv~v~~~~~~~   84 (164)
T 2h30_A           17 PHTMS--TMKTADNR-PASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFS---------SANLITVASPGFLH   84 (164)
T ss_dssp             HHHHT--TCEETTSS-BGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGT---------TSEEEEEECTTSTT
T ss_pred             CCcCC--ccCCCCCC-EeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC---------CcEEEEEEcCCCcc
Confidence            44445  66 89999 99999999999999999999999999999999999998766         7999999985    


Q ss_pred             -CCHHHHHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEecc
Q 014225          278 -RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       278 -~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                       .+.+.+.+|+...++..+++..|....+++.|+|.++|+++|||++|+++.+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  138 (164)
T 2h30_A           85 EKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQNLNISVYPSWALIGKDGDVQRIV  138 (164)
T ss_dssp             CCCTTHHHHHHTTSCCTTSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEE
T ss_pred             ccCHHHHHHHHHhCCCCcceEEEcCchHHHHHcCCCccceEEEECCCCcEEEEE
Confidence             34678889888877655788778888999999999999999999999999874

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=99.81  E-value=5e-20  Score=160.71  Aligned_cols=118  Identities=15%  Similarity=0.218  Sum_probs=105.9

Q ss_pred             hhccCCCCccc---CCCC--Cceecccc-cCCcEEEEEEe-ccCChhHH-hhhHHHHHHHHHHHhhhhhcCCCCCCEE-E
Q 014225          201 LLTNHDRGYLL---GHPP--DEKVPVSS-LVGKTVGLYFS-ARWCIPCE-KFMPKLLSIYQKIKQNLVEKGDALEDFE-V  271 (428)
Q Consensus       201 ~~g~~~p~f~l---~~~g--~~~v~l~~-~~gk~vll~F~-a~wC~~C~-~~~~~l~~l~~~~~~~~~~~~~~~~~~~-i  271 (428)
                      .+|.++|+|++   +.+|  + .+++++ ++||+++|+|| ++|||+|. .++|.|++++++|+++         +++ |
T Consensus         5 ~~G~~aP~f~l~~~~~~G~~~-~~~l~~~~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~---------~v~~v   74 (162)
T 1tp9_A            5 AVGDVLPDGKLAYFDEQDQLQ-EVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSK---------GVTEI   74 (162)
T ss_dssp             CTTCBCCCCEEEEECTTSCEE-EEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHT---------TCCCE
T ss_pred             CCCCCCCCeEEEeecCCCCce-eEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHC---------CCCEE
Confidence            36899999986   7899  8 999999 99999999999 89999999 9999999999999876         799 9


Q ss_pred             EEEEcCCCHHHHHHHHhcCCcc-ccccCCcchhHHHHhcCcC-----------ccceEEEECCCCcEEecc
Q 014225          272 VFVSTDRDQTSFESYFGTMPWL-ALPFGDPTIKELTKYFDVQ-----------GIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       272 v~is~d~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~  330 (428)
                      ++||+| +.+..++|.++.+.- +||++.|.+..+++.||+.           .+|++|||| +|+|++.+
T Consensus        75 v~Is~d-~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~~~vid-~G~i~~~~  143 (162)
T 1tp9_A           75 LCISVN-DPFVMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAAN  143 (162)
T ss_dssp             EEEESS-CHHHHHHHHHTCTTCSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEE
T ss_pred             EEEECC-CHHHHHHHHHhcCCCCCeEEEECCCchHHHHcCcccccccCCCCccceeEEEEEE-CCEEEEEE
Confidence            999998 677888999888733 6899889889999999986           279999999 99999985

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.81  E-value=6e-20  Score=168.20  Aligned_cols=118  Identities=14%  Similarity=0.235  Sum_probs=103.9

Q ss_pred             cccccccCc-cccCCCCEEecccCCCC-EEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecC-------CC
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSDLEGK-VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-------ED  107 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk-~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D-------~~  107 (428)
                      .+|..+|+| |.+.+|+++++++++|| +|||+||++||++|+.++|.|++++++|++.+  +++|+|++|       .+
T Consensus        33 ~~G~~aP~f~l~~~~G~~v~l~~~~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~Vs~d~~~~~~~d~  110 (218)
T 3u5r_E           33 TLGTRAADFVLPDAGGNLFTLAEFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQG--LAVVAINSNDAQAFPEET  110 (218)
T ss_dssp             CTTCBCCCCCEECTTCCEECGGGGTTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTT--EEEEEEECSCTTTCGGGS
T ss_pred             CCCCcCCCcEeECCCCCEEeHHHhCCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCC--cEEEEEECCcccccccCC
Confidence            469999999 99999999999999999 59999999999999999999999999999887  999999997       67


Q ss_pred             hHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          108 LNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      .+.+++|.+++++....+.|.+  ..+++.|++.++|+++|||+   +|+++++
T Consensus       111 ~~~~~~~~~~~~~~~~~l~D~~--~~~~~~~~v~~~P~~~liD~---~G~i~~~  159 (218)
T 3u5r_E          111 LERVGAEVKAYGYGFPYLKDAS--QSVAKAYGAACTPDFFLYDR---ERRLVYH  159 (218)
T ss_dssp             HHHHHHHHHHHTCCSCEEECTT--CHHHHHHTCCEESEEEEECT---TCBEEEE
T ss_pred             HHHHHHHHHHhCCCccEEECCc--cHHHHHcCCCCCCeEEEECC---CCcEEEe
Confidence            7889999998764222222433  68999999999999999999   9999865

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=99.81  E-value=1.3e-19  Score=159.44  Aligned_cols=144  Identities=15%  Similarity=0.179  Sum_probs=107.1

Q ss_pred             HhhhhccCCCCccc-CCCCCceecccccCCcEEEEEEeccCCh-hHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEE
Q 014225          198 LINLLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCI-PCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS  275 (428)
Q Consensus       198 ~~~~~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~-~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is  275 (428)
                      +...+|.++|+|+| |.+|+ .+++++++||+|||+||++||| +|...++.|.++++.+++.       +.++.+|+||
T Consensus         4 ~~~P~~~~~PdF~L~d~~G~-~v~l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~-------~~~v~~v~is   75 (170)
T 4hde_A            4 LRKPLNWDLETFQFTNQDGK-PFGTKDLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEE-------KLDVQFVSFS   75 (170)
T ss_dssp             CCSCCCBCCCCCEEECTTSC-EEEHHHHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHT-------TCCCEEEEEE
T ss_pred             cccCCCCcCCCcEEECCCCC-EEeHHHhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcc-------cccceeEeee
Confidence            45567999999999 99999 9999999999999999999997 8999999999999999876       5679999999


Q ss_pred             cCC---CHHHHHHHHhcCCc--cccccCCc-chhH----HHHhcC----------cCccceEEEECCCCcEEeccccchh
Q 014225          276 TDR---DQTSFESYFGTMPW--LALPFGDP-TIKE----LTKYFD----------VQGIPCLVIIGPEGKTVTKQGRNLI  335 (428)
Q Consensus       276 ~d~---~~~~~~~~~~~~~~--~~~~~~~d-~~~~----~~~~~~----------v~~~P~~~lid~~G~i~~~~~~~~~  335 (428)
                      +|.   +++.+++|.+.++.  ..+.++.+ ....    ....|+          +...|++||||++|+|+..+.+.  
T Consensus        76 vDp~~Dtp~~l~~y~~~~~~~~~~~~~ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~--  153 (170)
T 4hde_A           76 VDPDLDKPENLKAFIQKFTEDTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKKYSGI--  153 (170)
T ss_dssp             SCTTTCCHHHHHHHHTTTCSCCTTEEEEBCSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEEEESS--
T ss_pred             cCcccccHHHHHHHHHHcCCCCCCceecCcccHHHHHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEEECCC--
Confidence            984   56788899887642  22222211 1111    222333          33457899999999999764321  


Q ss_pred             hcccccCCCCChHHHHHHHHHHHHHH
Q 014225          336 NLYQENAYPFTEAKLEFLEKQMEEEA  361 (428)
Q Consensus       336 ~~~g~~~~p~~~~~~~~L~~~l~~~~  361 (428)
                                .....++|.+.|++++
T Consensus       154 ----------~~~~~~~l~~~ik~Ll  169 (170)
T 4hde_A          154 ----------SNTPYEDIIRDMKRLA  169 (170)
T ss_dssp             ----------SSCCHHHHHHHHHHHH
T ss_pred             ----------CCCCHHHHHHHHHHHh
Confidence                      1122466777777665

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=99.80  E-value=2.9e-19  Score=161.46  Aligned_cols=125  Identities=19%  Similarity=0.293  Sum_probs=100.5

Q ss_pred             hhhccCC--CCccc-CCCCCceecccccCCcEEEEEEeccCChh-HHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEE
Q 014225          200 NLLTNHD--RGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIP-CEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS  275 (428)
Q Consensus       200 ~~~g~~~--p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~-C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is  275 (428)
                      ..+|.++  |+|++ +.+|+ .+++++++||++||+||++||++ |..++|.|.++++++.++.      +.++.||+|+
T Consensus        13 ~~~g~~~~~p~f~l~d~~G~-~v~l~~~~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~------~~~v~vv~Is   85 (200)
T 2b7k_A           13 RGYGKPSLGGPFHLEDMYGN-EFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKY------GITLQPLFIT   85 (200)
T ss_dssp             ---CCCCCCCCCEEEETTSC-EEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHH------CCCCEEEEEE
T ss_pred             hccCCCCcCCCEEEEcCCCC-EEeHHHcCCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhh------CCceEEEEEE
Confidence            4568886  99999 99999 99999999999999999999997 9999999999999987531      2379999999


Q ss_pred             cCC---CHHHHHHHHhcCC--ccccccCCcchhHHHHhcCcC-ccc---------------eEEEECCCCcEEeccc
Q 014225          276 TDR---DQTSFESYFGTMP--WLALPFGDPTIKELTKYFDVQ-GIP---------------CLVIIGPEGKTVTKQG  331 (428)
Q Consensus       276 ~d~---~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~v~-~~P---------------~~~lid~~G~i~~~~~  331 (428)
                      +|.   +.+.+++|...++  |..++...|....+++.|||. +.|               ++||||++|+|+.+..
T Consensus        86 ~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~  162 (200)
T 2b7k_A           86 CDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALG  162 (200)
T ss_dssp             SCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEEC
T ss_pred             CCCCCCCHHHHHHHHHHcCCCceEEeCCHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeC
Confidence            995   6788999998765  333444445667899999997 444               7899999999998754

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=99.80  E-value=5.3e-20  Score=162.62  Aligned_cols=116  Identities=15%  Similarity=0.136  Sum_probs=100.0

Q ss_pred             hccCCCCccc-CCCCCceecccccCCcEEEEEEeccC-ChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARW-CIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD  279 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~w-C~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~  279 (428)
                      +|.++|+|++ +.+|+ .+++++++||++||+||++| |++|+.++|.|.+++++   .         +++||+|++| +
T Consensus        20 ~G~~~P~f~l~~~~G~-~v~l~~~~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~---~---------~v~vv~Is~D-~   85 (175)
T 1xvq_A           20 VGSPAPAFTLTGGDLG-VISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA---S---------GATVLCVSKD-L   85 (175)
T ss_dssp             TTSBCCCCEEECTTSC-EEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH---T---------TCEEEEEESS-C
T ss_pred             cCCcCCCeEEECCCCC-EEeHHHcCCCEEEEEEEeCCCCchHHHHHHHHHHHHhh---c---------CCEEEEEECC-C
Confidence            5889999999 99999 99999999999999999999 99999999999999988   3         5899999998 5


Q ss_pred             HHHHHHHHhcCCccccccCCcchhHHHHhcCcCcc---------ceEEEECCCCcEEeccc
Q 014225          280 QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGI---------PCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~---------P~~~lid~~G~i~~~~~  331 (428)
                      .+..++|.++.++.+||+..|....+.+.|++...         |++||||++|+|+++..
T Consensus        86 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~g~~~p~~~lid~~G~I~~~~~  146 (175)
T 1xvq_A           86 PFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTEL  146 (175)
T ss_dssp             HHHHTTCC------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEEE
T ss_pred             HHHHHHHHHHcCCCCceEeeCCHHHHHHHhCCcccccccCCcccceEEEECCCCeEEEEEE
Confidence            56778888777644788888878899999999887         99999999999999863

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=99.80  E-value=3.3e-19  Score=162.62  Aligned_cols=136  Identities=14%  Similarity=0.151  Sum_probs=104.3

Q ss_pred             hccCCCCccc-CCC-CCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC-
Q 014225          202 LTNHDRGYLL-GHP-PDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-  278 (428)
Q Consensus       202 ~g~~~p~f~l-~~~-g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~-  278 (428)
                      .+..+|+|++ +.+ |+ .+++++++||+|||+|||+||++|+ ++|.|++++++|+++         +++||+|++|. 
T Consensus        31 ~~~~~pdF~l~d~~~G~-~v~Lsd~~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~---------g~~Vlgvs~d~f   99 (215)
T 2i3y_A           31 EKGTIYDYEAIALNKNE-YVSFKQYVGKHILFVNVATYCGLTA-QYPELNALQEELKPY---------GLVVLGFPCNQF   99 (215)
T ss_dssp             CCCCGGGCEEEBSSSSC-EEEGGGGTTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGG---------TEEEEEEECCCS
T ss_pred             ccCCcCCcEeeeCCCCC-EEcHHHhCCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccC---------CeEEEEEEcccc
Confidence            3567899999 999 99 9999999999999999999999998 999999999999877         89999999862 


Q ss_pred             ------CHHHHHHHHh------cCCccccccCCcc--hh----H----HHHh-------cC--------------cCccc
Q 014225          279 ------DQTSFESYFG------TMPWLALPFGDPT--IK----E----LTKY-------FD--------------VQGIP  315 (428)
Q Consensus       279 ------~~~~~~~~~~------~~~~~~~~~~~d~--~~----~----~~~~-------~~--------------v~~~P  315 (428)
                            +.+++++|++      +++ ++||+..|.  +.    .    +...       ++              |...|
T Consensus       100 ~~~e~~~~~~i~~f~~~~~~~~~~~-~~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~np  178 (215)
T 2i3y_A          100 GKQEPGDNKEILPGLKYVRPGGGFV-PSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNF  178 (215)
T ss_dssp             TTCCCSCHHHHHHHHHHTSSCTTCC-CSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTT
T ss_pred             CcCCCCCHHHHHHHHHhccchhccC-ccceeEeeeccCCcccchHHHHHHhhCcccccccccccccccccccccccccCc
Confidence                  4577888888      555 678876432  11    1    1111       11              22338


Q ss_pred             eEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhc
Q 014225          316 CLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKN  363 (428)
Q Consensus       316 ~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~  363 (428)
                      ++||||++|+|+.+..+.           ..   .++|++.|+++++.
T Consensus       179 ttfLID~~G~vv~~~~g~-----------~~---~~~l~~~I~~ll~~  212 (215)
T 2i3y_A          179 EKFLVGPDGIPVMRWSHR-----------AT---VSSVKTDILAYLKQ  212 (215)
T ss_dssp             CEEEECTTSCEEEEECTT-----------SC---HHHHHHHHHHHGGG
T ss_pred             eEEEECCCCeEEEEeCCC-----------CC---HHHHHHHHHHHHHH
Confidence            999999999999985331           12   25677888877753

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.80  E-value=1.1e-19  Score=155.93  Aligned_cols=117  Identities=19%  Similarity=0.327  Sum_probs=103.6

Q ss_pred             cccccc-Cc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHH
Q 014225           38 LASKDR-DY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYR  115 (428)
Q Consensus        38 ~g~~~p-df-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~  115 (428)
                      +|..+| +| +.+.+|+++++++++||+++|+||++||++|+.++|.|+++++++++.+  +.+++|+.|...+.+++++
T Consensus         5 ~G~~~p~~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~--~~~v~v~~d~~~~~~~~~~   82 (152)
T 2lja_A            5 SGNPSAASFSYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKD--IHFVSLSCDKNKKAWENMV   82 (152)
T ss_dssp             TTCCCSSSCEEEETTTEEEESTTTTTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSS--EEEEEEECCSCHHHHHHHH
T ss_pred             cCCCCCcccEeecCCCCEeeHHHcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCC--eEEEEEEccCcHHHHHHHH
Confidence            688999 99 9999999999999999999999999999999999999999999998766  9999999999988899999


Q ss_pred             hcCCCceecc-CChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          116 ACMPWLAVPY-SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       116 ~~~~~~~~~~-~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      ++.++...++ .+.+  ..+.+.|++.++|+++|||+   +|+++..
T Consensus        83 ~~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~---~G~i~~~  124 (152)
T 2lja_A           83 TKDQLKGIQLHMGTD--RTFMDAYLINGIPRFILLDR---DGKIISA  124 (152)
T ss_dssp             HHHTCCSEEEECSSC--THHHHHTTCCSSCCEEEECT---TSCEEES
T ss_pred             HhcCCCCceeecCcc--hhHHHHcCcCCCCEEEEECC---CCeEEEc
Confidence            8766533332 1332  68999999999999999999   9998865

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.80  E-value=2.7e-19  Score=155.52  Aligned_cols=118  Identities=23%  Similarity=0.363  Sum_probs=102.3

Q ss_pred             ccccccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHH
Q 014225           36 SLLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNY  114 (428)
Q Consensus        36 ~~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~  114 (428)
                      ...|..+|+| +.+.+|+++++++++||+++|+||++||++|+.++|.|+++++++++.+  +.+++|++|.+.+.++++
T Consensus         8 ~~~g~~~p~~~l~~~~g~~~~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~--v~~v~v~~d~~~~~~~~~   85 (165)
T 3or5_A            8 DARPTPAPSFSGVTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRG--FTFVGIAVNEQLPNVKNY   85 (165)
T ss_dssp             CCCCCBCCCCEEECTTSCEEEGGGGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTT--EEEEEEECSCCHHHHHHH
T ss_pred             hcCCCCCCCceeeCCCCCEechhHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCC--eEEEEEECCCCHHHHHHH
Confidence            3568999999 9999999999999999999999999999999999999999999999876  999999999999999999


Q ss_pred             HhcCCCceeccCChHHHHHHHhhc------CCCCCceEEEEcCCCCCCCcccc
Q 014225          115 RACMPWLAVPYSDLETKKALNRKF------DIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       115 ~~~~~~~~~~~~d~~~~~~l~~~~------~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      ++++++....+.+.   ..+.+.|      ++.++|+++|||+   +|+++..
T Consensus        86 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~P~~~lid~---~G~i~~~  132 (165)
T 3or5_A           86 MKTQGIIYPVMMAT---PELIRAFNGYIDGGITGIPTSFVIDA---SGNVSGV  132 (165)
T ss_dssp             HHHHTCCSCEEECC---HHHHHHHHTTSTTCSCSSSEEEEECT---TSBEEEE
T ss_pred             HHHcCCCCceEecC---HHHHHHHhhhhccCCCCCCeEEEECC---CCcEEEE
Confidence            98766432222233   3666666      8999999999999   9988754

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=99.80  E-value=2.3e-19  Score=157.40  Aligned_cols=117  Identities=15%  Similarity=0.151  Sum_probs=105.0

Q ss_pred             hccCCCCccc--CCCCCceeccccc-CCcEEEEEEe-ccCChhHHh-hhHHHHHHHHHHHhhhhhcCCCCCCE-EEEEEE
Q 014225          202 LTNHDRGYLL--GHPPDEKVPVSSL-VGKTVGLYFS-ARWCIPCEK-FMPKLLSIYQKIKQNLVEKGDALEDF-EVVFVS  275 (428)
Q Consensus       202 ~g~~~p~f~l--~~~g~~~v~l~~~-~gk~vll~F~-a~wC~~C~~-~~~~l~~l~~~~~~~~~~~~~~~~~~-~iv~is  275 (428)
                      +|.++|+|++  +.+|+ .++++++ +||++||+|| ++|||+|.. ++|.|++++++|+++         ++ +||+||
T Consensus         5 ~G~~aP~f~l~~~~~G~-~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~---------gv~~vv~Is   74 (167)
T 2wfc_A            5 EGDKLPAVTVFGATPND-KVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGK---------GVDIIACMA   74 (167)
T ss_dssp             TTCBCCCCEEESSSTTC-EEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHT---------TCCEEEEEE
T ss_pred             CCCcCCCcEeecCCCCc-EEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHC---------CCCEEEEEe
Confidence            5899999998  78899 9999998 9999988887 999999999 999999999999877         89 999999


Q ss_pred             cCCCHHHHHHHHhcCCccc--cccCCcchhHHHHhcCcCcc-----------ceEEEECCCCcEEeccc
Q 014225          276 TDRDQTSFESYFGTMPWLA--LPFGDPTIKELTKYFDVQGI-----------PCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       276 ~d~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~v~~~-----------P~~~lid~~G~i~~~~~  331 (428)
                      .| +.+..++|.++.+ +.  ||++.|.+.++++.||+...           |++||| ++|+|++...
T Consensus        75 ~d-~~~~~~~~~~~~~-~~~~fp~l~D~~~~~~~~~gv~~~~~~~~g~~~~~p~t~lI-~~G~I~~~~~  140 (167)
T 2wfc_A           75 VN-DSFVMDAWGKAHG-ADDKVQMLADPGGAFTKAVDMELDLSAVLGNVRSKRYSLVI-EDGVVTKVNV  140 (167)
T ss_dssp             SS-CHHHHHHHHHHTT-CTTTSEEEECTTSHHHHHTTCEECCHHHHSSCEECCEEEEE-ETTEEEEEEE
T ss_pred             CC-CHHHHHHHHHhcC-CCcceEEEECCCCcHHHHcCCccccccccCcccceEEEEEE-eCCEEEEEEe
Confidence            98 5778889988877 45  99999999999999999754           999999 9999999853

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=99.80  E-value=2.5e-19  Score=157.59  Aligned_cols=141  Identities=15%  Similarity=0.123  Sum_probs=111.3

Q ss_pred             hccCCC-Cccc-CCCCCceecccccCCcEEEEEEeccCCh-hHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC-
Q 014225          202 LTNHDR-GYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCI-PCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD-  277 (428)
Q Consensus       202 ~g~~~p-~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~-~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d-  277 (428)
                      +|.++| +|++ +.+|+ .+++++++||++||+||++||+ +|..+++.|++++++|+..       +.++++|+|++| 
T Consensus         3 ~G~~~P~~f~l~d~~G~-~v~l~~~~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~-------~~~~~vv~is~d~   74 (170)
T 3me7_A            3 LGTYVPGDITLVDSYGN-EFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTP-------GKDFWVITFTFDP   74 (170)
T ss_dssp             TTCBCCTTCEEEETTCC-EEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCB-------TTTBEEEEEECCT
T ss_pred             CCCcCCCCeEEEcCCcC-EEchHHhCCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhc-------CCceEEEEEECCC
Confidence            689999 9999 99999 9999999999999999999997 6999999999999999753       347999999998 


Q ss_pred             -CCHHHHHHHHhcCCc--cccc--c--CCcchhHHHHhcCc---------CccceEEEECCCCcEEeccccchhhccccc
Q 014225          278 -RDQTSFESYFGTMPW--LALP--F--GDPTIKELTKYFDV---------QGIPCLVIIGPEGKTVTKQGRNLINLYQEN  341 (428)
Q Consensus       278 -~~~~~~~~~~~~~~~--~~~~--~--~~d~~~~~~~~~~v---------~~~P~~~lid~~G~i~~~~~~~~~~~~g~~  341 (428)
                       .+.+.+++|.++++.  ..++  .  ..+....+++.||+         ...|++||||++|+|+....       |..
T Consensus        75 ~d~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~-------g~~  147 (170)
T 3me7_A           75 KDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIY-------GVN  147 (170)
T ss_dssp             TCCHHHHHHHHHHTTCCSSSEEEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEE-------SSS
T ss_pred             CCCHHHHHHHHHHcCCCCCCeEEEeCCCHHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEe-------CCC
Confidence             367888999887762  1111  2  12456788888774         45689999999999998732       211


Q ss_pred             CCCCChHHHHHHHHHHHHHHhc
Q 014225          342 AYPFTEAKLEFLEKQMEEEAKN  363 (428)
Q Consensus       342 ~~p~~~~~~~~L~~~l~~~~~~  363 (428)
                         ..   .++|.+.|++++..
T Consensus       148 ---~~---~~~i~~~l~~~~~~  163 (170)
T 3me7_A          148 ---YN---YLEFVNALRLARGE  163 (170)
T ss_dssp             ---CC---HHHHHHHHHHHTTC
T ss_pred             ---CC---HHHHHHHHHHhhcc
Confidence               12   46778888777653

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.79  E-value=2.2e-19  Score=158.79  Aligned_cols=115  Identities=17%  Similarity=0.226  Sum_probs=101.5

Q ss_pred             ccccccccCc-cccCCC--CEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHH
Q 014225           36 SLLASKDRDY-LLNQHG--TQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN  112 (428)
Q Consensus        36 ~~~g~~~pdf-l~~~~G--~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~  112 (428)
                      ..+|..+|+| |.+.+|  +++++++++||+++|+||++||++|+.++|.|++++++    +  +++++|++|.+.+.++
T Consensus        30 ~~~G~~~P~f~l~~~~g~~~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~----~--v~vv~vs~~d~~~~~~  103 (176)
T 3kh7_A           30 ALIGKPFPAFDLPSVQDPARRLTEADLKGKPALVNVWGTWCPSCRVEHPELTRLAEQ----G--VVIYGINYKDDNAAAI  103 (176)
T ss_dssp             TTTTSBCCCCEEEBSSCTTSEEEGGGGCSSCEEEEEECTTCHHHHHHHHHHHHHHHT----T--CEEEEEEESCCHHHHH
T ss_pred             cccCCcCCCcEecccCCCCceecHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHC----C--CEEEEEeCCCCHHHHH
Confidence            3679999999 999999  89999999999999999999999999999999998876    4  9999999999999999


Q ss_pred             HHHhcCCCceec-cCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          113 NYRACMPWLAVP-YSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       113 ~~~~~~~~~~~~-~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +|++++++.... +.+.+  ..+.+.|++.++|+++|||+   +|+++..
T Consensus       104 ~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~---~G~i~~~  148 (176)
T 3kh7_A          104 KWLNELHNPYLLSISDAD--GTLGLDLGVYGAPETYLIDK---QGIIRHK  148 (176)
T ss_dssp             HHHHHTTCCCSEEEEETT--CHHHHHHTCCSSCEEEEECT---TCBEEEE
T ss_pred             HHHHHcCCCCceEEECCc--chHHHHcCCCCCCeEEEECC---CCeEEEE
Confidence            999988754332 22333  68999999999999999999   9998865

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.79  E-value=2.4e-19  Score=152.11  Aligned_cols=118  Identities=16%  Similarity=0.291  Sum_probs=101.1

Q ss_pred             ccccccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCC---ChHHH
Q 014225           36 SLLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE---DLNAF  111 (428)
Q Consensus        36 ~~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~---~~~~~  111 (428)
                      ..+|..+|+| +.+.+|+.+++++ +||+++|+||++||++|+.++|.|+++++++++.+  +.+++|++|.   +.+.+
T Consensus         9 ~~~g~~~p~~~l~~~~g~~~~l~~-~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~v~v~~d~~~~~~~~~   85 (145)
T 3erw_A            9 EKQPAVPAVFLMKTIEGEDISIPN-KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDS--VKLVTVNLVNSEQNQQVV   85 (145)
T ss_dssp             ---CCSCCEEEEECTTSCEEEESC-TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSS--EEEEEEECGGGSSCHHHH
T ss_pred             ccCCCcCCCceeecCCCCEEeHHH-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCC--EEEEEEEccCCcCCHHHH
Confidence            3568999999 9999999999999 99999999999999999999999999999998665  9999999986   88889


Q ss_pred             HHHHhcCCCceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          112 NNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       112 ~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +++++++++....+.+..  ..+.+.|++.++|++++||+   +|+++..
T Consensus        86 ~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~---~G~i~~~  130 (145)
T 3erw_A           86 EDFIKANKLTFPIVLDSK--GELMKEYHIITIPTSFLLNE---KGEIEKT  130 (145)
T ss_dssp             HHHHHHTTCCSCEEECSS--SHHHHHTTCCEESEEEEECT---TCCEEEE
T ss_pred             HHHHHHcCCceeEEEcCc--hhHHHhcCcCccCeEEEEcC---CCcEEEE
Confidence            999998765322222333  68999999999999999999   9998754

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=99.79  E-value=2.1e-19  Score=158.44  Aligned_cols=123  Identities=14%  Similarity=0.126  Sum_probs=105.4

Q ss_pred             HhhhhccCCCCccc--CCCCCceecccc-cCCcEEEEEE-eccCChhHH-hhhHHHHHHHHHHHhhhhhcCCCCCCEEEE
Q 014225          198 LINLLTNHDRGYLL--GHPPDEKVPVSS-LVGKTVGLYF-SARWCIPCE-KFMPKLLSIYQKIKQNLVEKGDALEDFEVV  272 (428)
Q Consensus       198 ~~~~~g~~~p~f~l--~~~g~~~v~l~~-~~gk~vll~F-~a~wC~~C~-~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv  272 (428)
                      ....+|.++|+|++  +.+|+ .+++++ ++||+++|+| |++|||+|. .++|.|++++++|+++         ++++|
T Consensus        13 ~~~~vG~~aPdf~l~~~~~g~-~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~---------gv~vv   82 (173)
T 3mng_A           13 APIKVGDAIPAVEVFEGEPGN-KVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAK---------GVQVV   82 (173)
T ss_dssp             CCCCTTCBCCCCEEECSSTTC-EEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTT---------TCCEE
T ss_pred             CCCCCCCCCCCeEeeeCCCCC-EEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhC---------CCEEE
Confidence            34457999999999  68899 999999 6999766655 599999999 5999999999999977         89999


Q ss_pred             E-EEcCCCHHHHHHHHhcCCcc-ccccCCcchhHHHHhcCcC-------------ccceEEEECCCCcEEecccc
Q 014225          273 F-VSTDRDQTSFESYFGTMPWL-ALPFGDPTIKELTKYFDVQ-------------GIPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       273 ~-is~d~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~v~-------------~~P~~~lid~~G~i~~~~~~  332 (428)
                      + ||.| +....++|.++.+.. .||++.|.+.++++.||+.             ..|++|||| +|+|++....
T Consensus        83 ~~iS~D-~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~~~~~~~~g~~~~~r~tfvID-dG~I~~~~v~  155 (173)
T 3mng_A           83 ACLSVN-DAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQ-DGIVKALNVE  155 (173)
T ss_dssp             EEEESS-CHHHHHHHHHHTTCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEE-TTEEEEEEEC
T ss_pred             EEEcCC-CHHHHHHHHHHhCCCCceEEEECCChHHHHHhCCCcccccccccCCcceEEEEEEEE-CCEEEEEEEe
Confidence            7 9998 677888999888743 4999999999999999985             359999999 9999998644

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.79  E-value=1.6e-19  Score=167.92  Aligned_cols=121  Identities=13%  Similarity=0.147  Sum_probs=105.3

Q ss_pred             hhccCCCCccc-CCCCCc--eecccc-cCCcEEEEEEe-ccCChhHH-hhhHHHHHHHHHHHhhhhhcCCCCCCE-EEEE
Q 014225          201 LLTNHDRGYLL-GHPPDE--KVPVSS-LVGKTVGLYFS-ARWCIPCE-KFMPKLLSIYQKIKQNLVEKGDALEDF-EVVF  273 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g~~--~v~l~~-~~gk~vll~F~-a~wC~~C~-~~~~~l~~l~~~~~~~~~~~~~~~~~~-~iv~  273 (428)
                      .+|.++|+|++ +..+.+  .+++++ ++||++||+|| ++|||+|. .++|.|++++++|+++         ++ +|++
T Consensus         4 ~~G~~aP~f~l~~~~~g~~~~v~l~~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~---------~~~~vv~   74 (241)
T 1nm3_A            4 MEGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKY---------GVDDILV   74 (241)
T ss_dssp             CTTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHT---------TCCEEEE
T ss_pred             cCCCCCCCeEEEcccCCCceeecHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHC---------CCCEEEE
Confidence            36899999999 753332  689999 89999999999 99999999 9999999999999877         89 9999


Q ss_pred             EEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhcCcC-----------ccceEEEECCCCcEEecccc
Q 014225          274 VSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ-----------GIPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       274 is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~~~  332 (428)
                      ||.| +.+..++|.++.+..+||++.|.+..+++.||+.           ..|++||| ++|+|++...+
T Consensus        75 is~d-~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~t~li-~~G~i~~~~~~  142 (241)
T 1nm3_A           75 VSVN-DTFVMNAWKEDEKSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLV-KNGVVEKMFIE  142 (241)
T ss_dssp             EESS-CHHHHHHHHHHTTCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEE-ETTEEEEEEEC
T ss_pred             EEcC-CHHHHHHHHHhcCCCceEEEECCCcHHHHHhCceeecccccCcccceeEEEEE-ECCEEEEEEEe
Confidence            9998 5778889998887555999999999999999986           45899999 99999998543

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=99.79  E-value=6.8e-20  Score=163.21  Aligned_cols=120  Identities=12%  Similarity=0.131  Sum_probs=103.1

Q ss_pred             hhccCCCCccc-CC--CC-Cceecccc-cCCcEE-EEEEeccCChhHHh-hhHHHHHHHHHHHhhhhhcCCCCCCEE-EE
Q 014225          201 LLTNHDRGYLL-GH--PP-DEKVPVSS-LVGKTV-GLYFSARWCIPCEK-FMPKLLSIYQKIKQNLVEKGDALEDFE-VV  272 (428)
Q Consensus       201 ~~g~~~p~f~l-~~--~g-~~~v~l~~-~~gk~v-ll~F~a~wC~~C~~-~~~~l~~l~~~~~~~~~~~~~~~~~~~-iv  272 (428)
                      .+|.++|+|++ +.  +| + .+++++ ++||++ |++||++|||+|.. ++|.|++++++|+++         ++. |+
T Consensus        27 ~vG~~aPdf~l~~~~~~G~~-~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~---------gv~~vv   96 (184)
T 3uma_A           27 AVGDKLPNATFKEKTADGPV-EVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILAR---------GVDDIA   96 (184)
T ss_dssp             CTTCBCCCCEEEEEETTEEE-EEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTT---------TCCEEE
T ss_pred             CCCCCCCCcEeecccCCCce-EEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHc---------CCCEEE
Confidence            46999999999 87  88 8 999999 899865 55566999999999 799999999999977         788 99


Q ss_pred             EEEcCCCHHHHHHHHhcCCcc-ccccCCcchhHHHHhcCcC-----------ccceEEEECCCCcEEecccc
Q 014225          273 FVSTDRDQTSFESYFGTMPWL-ALPFGDPTIKELTKYFDVQ-----------GIPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       273 ~is~d~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~~~  332 (428)
                      +||+| +....++|.++.+.. .||++.|.+..+++.||+.           ..|++|||| +|+|++....
T Consensus        97 ~Is~d-~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~~~~~g~g~~~~r~tfiId-dG~I~~~~~~  166 (184)
T 3uma_A           97 VVAVN-DLHVMGAWATHSGGMGKIHFLSDWNAAFTKAIGMEIDLSAGTLGIRSKRYSMLVE-DGVVKALNIE  166 (184)
T ss_dssp             EEESS-CHHHHHHHHHHHTCTTTSEEEECTTCHHHHHTTCEEEEGGGTCEEEECCEEEEEE-TTEEEEEEEC
T ss_pred             EEECC-CHHHHHHHHHHhCCCCceEEEEcCchHHHHHcCCceeccccCCcccceeEEEEEC-CCEEEEEEEe
Confidence            99998 667888888877743 4999999999999999985           358899996 9999998643

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=99.67  E-value=5e-21  Score=162.53  Aligned_cols=124  Identities=32%  Similarity=0.652  Sum_probs=106.3

Q ss_pred             cccCc-cccCCCCEEeccc-CCCC-EEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhc
Q 014225           41 KDRDY-LLNQHGTQVKVSD-LEGK-VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRAC  117 (428)
Q Consensus        41 ~~pdf-l~~~~G~~v~l~~-~~gk-~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~  117 (428)
                      .+|+| |.+.+|+++++++ ++|| +++|+||++||++|+.++|.|+++++++++.+.++.+++|++|.+.+.+++|+++
T Consensus         3 ~~p~~~l~~~~g~~~~l~~~~~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~   82 (143)
T 2lus_A            3 FIQGIKLVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMME   82 (143)
Confidence            57899 9999999999999 9999 9999999999999999999999999999654335999999999888889999987


Q ss_pred             C--CCceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccccchhhhh
Q 014225          118 M--PWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIY  168 (428)
Q Consensus       118 ~--~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~~~~~~i~  168 (428)
                      +  +|..+++. .+....+++.|++.++|++++||+   +|+++..++...+.
T Consensus        83 ~~~~~~~~~~~-~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~~~~~~~~  131 (143)
T 2lus_A           83 SHGDWLAIPYR-SGPASNVTAKYGITGIPALVIVKK---DGTLISMNGRGEVQ  131 (143)
Confidence            6  45555552 333368999999999999999999   99999887665543

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=99.79  E-value=2e-19  Score=168.25  Aligned_cols=120  Identities=15%  Similarity=0.172  Sum_probs=105.9

Q ss_pred             hhccCCCCccc----CCCCCceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEE
Q 014225          201 LLTNHDRGYLL----GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS  275 (428)
Q Consensus       201 ~~g~~~p~f~l----~~~g~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is  275 (428)
                      .+|.++|+|++    +.+|+ .+++++++||++||+|| ++||++|..++|.|.+++++|+++         +++||+|+
T Consensus        63 ~vG~~aPdF~l~~l~d~~G~-~vsLsd~kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~---------gv~vv~IS  132 (254)
T 3tjj_A           63 KISKPAPYWEGTAVIDGEFK-ELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSI---------NTEVVACS  132 (254)
T ss_dssp             CTTSBCCCCEEEEEETTEEE-EEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTT---------TEEEEEEE
T ss_pred             CCCCCCCCcEeeeecCCCCc-EEeHHHHCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHc---------CCEEEEEc
Confidence            47999999996    44677 99999999999999999 899999999999999999999876         89999999


Q ss_pred             cCCCHHHHHHHHhcC------CccccccCCcchhHHHHhcCcC------ccceEEEECCCCcEEeccc
Q 014225          276 TDRDQTSFESYFGTM------PWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       276 ~d~~~~~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~  331 (428)
                      +| +.....+|++..      ..+.||++.|....+++.||+.      .+|++||||++|+|+++..
T Consensus       133 ~D-~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~va~~ygv~~~~~g~~~p~tflID~~G~I~~~~~  199 (254)
T 3tjj_A          133 VD-SQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITL  199 (254)
T ss_dssp             SS-CHHHHHHHHTSCGGGTSCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEE
T ss_pred             CC-CHHHHHHHHHHHHHhcCCcccccceeeCcHHHHHHHcCCccccCCCccceEEEECCCCeEEEEEe
Confidence            98 566777787765      1478899999889999999995      5899999999999999853

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.79  E-value=3.9e-19  Score=157.82  Aligned_cols=119  Identities=19%  Similarity=0.189  Sum_probs=101.0

Q ss_pred             ccccccccCc-cccC--CCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcE------EEEEEecCC
Q 014225           36 SLLASKDRDY-LLNQ--HGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDF------EVVFVSSDE  106 (428)
Q Consensus        36 ~~~g~~~pdf-l~~~--~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~------~ii~vs~D~  106 (428)
                      ...|..+|+| |.+.  +|+++++++++||++||+||++||++|+.++|.|++++++|++++  +      ++++|++|.
T Consensus        31 ~~~g~~~p~f~l~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~--~~~~~~v~~v~v~~d~  108 (183)
T 3lwa_A           31 EADRQQLPDIGGDSLMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAG--NGDTPGGTVLGINVRD  108 (183)
T ss_dssp             GGGCCCCCCCEEEBSSSTTCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC-----CCSEEEEEEECSC
T ss_pred             cccCCCCCceeccccccCCcEecHHHhCCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcC--CCccCCcEEEEEECCC
Confidence            4568899999 9999  999999999999999999999999999999999999999999987  7      999999998


Q ss_pred             -ChHHHHHHHhcCCCceeccCChHHHHHHHhhc---CCCCCceEEEEcCCCCCCCcccc
Q 014225          107 -DLNAFNNYRACMPWLAVPYSDLETKKALNRKF---DIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       107 -~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~---~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                       +.+.+++|++++++....+.+.+  ..+.+.|   ++.++|+++|||+   +|+++..
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~  162 (183)
T 3lwa_A          109 YSRDIAQDFVTDNGLDYPSIYDPP--FMTAASLGGVPASVIPTTIVLDK---QHRPAAV  162 (183)
T ss_dssp             CCHHHHHHHHHHTTCCSCEEECTT--CGGGGGTTTCCTTCCSEEEEECT---TSCEEEE
T ss_pred             CCHHHHHHHHHHcCCCccEEECCc--chHHHHhccCCCCCCCeEEEECC---CCcEEEE
Confidence             78899999998764322222333  4556655   5899999999999   9999865

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=99.79  E-value=1.4e-19  Score=159.39  Aligned_cols=120  Identities=14%  Similarity=0.150  Sum_probs=102.9

Q ss_pred             hhccCCCCccc-CC----CC-----Cceeccccc-CCc-EEEEEEeccCChhHHhh-hHHHHHHHHHHHhhhhhcCCCCC
Q 014225          201 LLTNHDRGYLL-GH----PP-----DEKVPVSSL-VGK-TVGLYFSARWCIPCEKF-MPKLLSIYQKIKQNLVEKGDALE  267 (428)
Q Consensus       201 ~~g~~~p~f~l-~~----~g-----~~~v~l~~~-~gk-~vll~F~a~wC~~C~~~-~~~l~~l~~~~~~~~~~~~~~~~  267 (428)
                      .+|.++|+|++ +.    +|     + .++++++ +|| +||++||++|||+|..+ +|.|++++++|+++         
T Consensus         8 ~~g~~aP~f~l~~~~~~~~G~~~~~~-~v~l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~---------   77 (171)
T 2pwj_A            8 DILSAASNVSLQKARTWDEGVESKFS-TTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAK---------   77 (171)
T ss_dssp             --CCCSSSBCCCSCEECCCSSCTTCC-CEEHHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHT---------
T ss_pred             cccCcCCCeEEecccccccCCccCcc-eEEHHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHC---------
Confidence            46889999999 76    47     7 9999996 996 67778999999999999 99999999999877         


Q ss_pred             CEE-EEEEEcCCCHHHHHHHHhcCCc-cccccCCcchhHHHHhcCcCc-----------cceEEEECCCCcEEecccc
Q 014225          268 DFE-VVFVSTDRDQTSFESYFGTMPW-LALPFGDPTIKELTKYFDVQG-----------IPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       268 ~~~-iv~is~d~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~-----------~P~~~lid~~G~i~~~~~~  332 (428)
                      ++. |++||.| +....++|.++.+. ++||++.|.+..+++.||+..           .|++++|| +|+|++.+.+
T Consensus        78 g~~~vv~Is~d-~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~~~~~~~~~g~~~~~~t~~I~-~G~I~~~~~~  153 (171)
T 2pwj_A           78 GVDSVICVAIN-DPYTVNAWAEKIQAKDAIEFYGDFDGSFHKSLELTTDLSAGLLGIRSERWSAYVV-DGKVKALNVE  153 (171)
T ss_dssp             TCSEEEEEESS-CHHHHHHHHHHTTCTTTSEEEECTTCHHHHHHTCEEECTTTTCCEEECCEEEEEE-TTEEEEEEEC
T ss_pred             CCCEEEEEeCC-CHHHHHHHHHHhCCCCceEEEECCccHHHHHhCCccccccccCCcccceeEEEEE-CCEEEEEEee
Confidence            789 9999998 56788899998886 579999999999999999853           56888898 9999998543

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=99.79  E-value=1.1e-18  Score=158.38  Aligned_cols=135  Identities=9%  Similarity=0.065  Sum_probs=101.1

Q ss_pred             hccCCCCccc-CCC-CCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC-
Q 014225          202 LTNHDRGYLL-GHP-PDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-  278 (428)
Q Consensus       202 ~g~~~p~f~l-~~~-g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~-  278 (428)
                      ....+|+|++ +.+ |+ .+++++++||+|||+|||+|||+| .++|.|++++++|+++         +++||+|++|. 
T Consensus        13 ~~~~~pdF~l~d~~~G~-~v~Ls~~kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~---------g~~vlgvs~d~f   81 (207)
T 2r37_A           13 ISGTIYEYGALTIDGEE-YIPFKQYAGKYVLFVNVASYGGLT-GQYIELNALQEELAPF---------GLVILGFPCNQF   81 (207)
T ss_dssp             --CCGGGCEEEBTTSSC-EEEGGGGTTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGG---------TEEEEEEECCCB
T ss_pred             ccCccCCeEeeeCCCCC-EEcHHHhCCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccC---------CEEEEEEECccc
Confidence            3567899999 999 99 999999999999999999999999 7999999999999977         79999999762 


Q ss_pred             ------CHHHHHHHHh------cCCccccccCCcc--hh----H----HHHhc-------C--------------cCccc
Q 014225          279 ------DQTSFESYFG------TMPWLALPFGDPT--IK----E----LTKYF-------D--------------VQGIP  315 (428)
Q Consensus       279 ------~~~~~~~~~~------~~~~~~~~~~~d~--~~----~----~~~~~-------~--------------v~~~P  315 (428)
                            +.++.++|++      +++ ++||+..|.  ++    .    +....       +              |...|
T Consensus        82 ~~~e~~~~~~i~~f~~~~~~~~~~~-~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~  160 (207)
T 2r37_A           82 GKQEPGENSEILPTLKYVRPGGGFV-PNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNF  160 (207)
T ss_dssp             TTCCCSCHHHHHHHHHHTSSCTTCC-CSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTT
T ss_pred             CcCCCCCHHHHHHHHHhcchhhccC-ccceeeeEeccCCcccchHHHHHHhhCccccccccccccccccccccCcccccc
Confidence                  4577888888      555 677776432  11    1    11111       1              22338


Q ss_pred             eEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHh
Q 014225          316 CLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAK  362 (428)
Q Consensus       316 ~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~  362 (428)
                      ++||||++|+|+.++.+.           ...   ++|.+.|+++++
T Consensus       161 ttflID~~G~i~~~~~g~-----------~~~---~~l~~~I~~ll~  193 (207)
T 2r37_A          161 EKFLVGPDGIPIMRWHHR-----------TTV---SNVKMDILSYMR  193 (207)
T ss_dssp             CEEEECTTSCEEEEECTT-----------SCH---HHHHHHHHHHHH
T ss_pred             eEEEECCCCcEEEEECCC-----------CCH---HHHHHHHHHHHh
Confidence            999999999999985431           122   456666666664

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.79  E-value=3.9e-19  Score=152.65  Aligned_cols=119  Identities=23%  Similarity=0.330  Sum_probs=101.4

Q ss_pred             ccccccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecC-CChHHHHH
Q 014225           36 SLLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-EDLNAFNN  113 (428)
Q Consensus        36 ~~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D-~~~~~~~~  113 (428)
                      +++|..+|+| |.+.+|+.+++++++||+++|+||++||++|+.++|.|+++++++++.+  +.+++|+.| .+.+.+++
T Consensus         2 ~~~G~~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~~~~~~~~~~~   79 (153)
T 2l5o_A            2 SLDSKTAPAFSLPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKN--FQVLAVAQPIDPIESVRQ   79 (153)
T ss_dssp             --CCTTCCSCEEECTTSCEEEHHHHTTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTT--EEEEEEECTTSCHHHHHH
T ss_pred             CCCCCCCCCcEeecCCCCCccHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCC--eEEEEEecCCCCHHHHHH
Confidence            4679999999 9999999999999999999999999999999999999999999999876  999999976 44577889


Q ss_pred             HHhcCCCceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          114 YRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       114 ~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      |++++++......+..  ..+.+.|++.++|++++||+   +|+++..
T Consensus        80 ~~~~~~~~~~~~~d~~--~~~~~~~~i~~~P~~~lid~---~G~i~~~  122 (153)
T 2l5o_A           80 YVKDYGLPFTVMYDAD--KAVGQAFGTQVYPTSVLIGK---KGEILKT  122 (153)
T ss_dssp             HHHHTTCCSEEEECSS--CHHHHHHTCCSSSEEEEECS---SSCCCEE
T ss_pred             HHHHcCCCceEEcCch--HHHHHHcCCCccCeEEEECC---CCcEEEE
Confidence            9988775322222332  67899999999999999999   9988754

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.79  E-value=7.4e-19  Score=173.07  Aligned_cols=192  Identities=17%  Similarity=0.230  Sum_probs=122.5

Q ss_pred             CEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCC
Q 014225           62 KVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE  141 (428)
Q Consensus        62 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~  141 (428)
                      ++++|.|+++||++|....|.+++++++++++   +.++.|+.|....                      ..+++.||+.
T Consensus       136 ~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~---i~f~~vd~~~~~~----------------------~~~~~~fgi~  190 (361)
T 3uem_A          136 KTHILLFLPKSVSDYDGKLSNFKTAAESFKGK---ILFIFIDSDHTDN----------------------QRILEFFGLK  190 (361)
T ss_dssp             CEEEEEECCSSSSSHHHHHHHHHHHHGGGTTT---CEEEEECTTSGGG----------------------HHHHHHTTCC
T ss_pred             CcEEEEEEeCCchhHHHHHHHHHHHHHHccCc---eEEEEecCChHHH----------------------HHHHHHcCCC
Confidence            57899999999999999999999999999875   6666654442222                      7889999998


Q ss_pred             C--CceEEEEcCCCCCCCcccccchhhhhhcccCccccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCc----cc-CCC
Q 014225          142 G--IPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGY----LL-GHP  214 (428)
Q Consensus       142 ~--~P~~~lid~~~~dG~i~~~~~~~~i~~~g~~~~p~t~~~~~~l~~~~~~~~~~~~~~~~~g~~~p~f----~l-~~~  214 (428)
                      +  +|++++++.   ++....         |.......+.+.+..+.....   ....-......+.|.-    .+ ..+
T Consensus       191 ~~~~P~~~~~~~---~~~~~k---------y~~~~~~~~~~~l~~fi~~~l---~g~~~~~~~s~~~p~~~~~~~v~~l~  255 (361)
T 3uem_A          191 KEECPAVRLITL---EEEMTK---------YKPESEELTAERITEFCHRFL---EGKIKPHLMSQELPEDWDKQPVKVLV  255 (361)
T ss_dssp             TTTCSEEEEEEC---C--CCE---------ECCSSCCCCHHHHHHHHHHHH---TTCSCCCCBCCCCCTTTTTSSSEEEC
T ss_pred             ccCCccEEEEEc---CCcccc---------cCCCccccCHHHHHHHHHHHh---cCCCcccccCCCCCcccccCCcEEee
Confidence            7  999999995   332211         111111233333333222111   0000000011122211    12 333


Q ss_pred             CCceecccc-cCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCcc
Q 014225          215 PDEKVPVSS-LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWL  293 (428)
Q Consensus       215 g~~~v~l~~-~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~  293 (428)
                      +. .+.-.. -.+++++|+|||+||++|+++.|.|.++++.+++.        .++.++.|..+.+              
T Consensus       256 ~~-~f~~~~~~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~--------~~v~~~~vd~~~~--------------  312 (361)
T 3uem_A          256 GK-NFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDH--------ENIVIAKMDSTAN--------------  312 (361)
T ss_dssp             TT-THHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTC--------SSEEEEEEETTTC--------------
T ss_pred             cC-chhhhcccCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccC--------CcEEEEEEECCcc--------------
Confidence            33 332222 25799999999999999999999999999998754        2577777766543              


Q ss_pred             ccccCCcchhHHHHhcCcCccceEEEECCC-CcEE
Q 014225          294 ALPFGDPTIKELTKYFDVQGIPCLVIIGPE-GKTV  327 (428)
Q Consensus       294 ~~~~~~d~~~~~~~~~~v~~~P~~~lid~~-G~i~  327 (428)
                               .  ++.|+|.++||+++++++ |+..
T Consensus       313 ---------~--~~~~~v~~~Pt~~~~~~~~~~~~  336 (361)
T 3uem_A          313 ---------E--VEAVKVHSFPTLKFFPASADRTV  336 (361)
T ss_dssp             ---------B--CSSCCCCSSSEEEEECSSSSCCC
T ss_pred             ---------c--hhhcCCcccCeEEEEECCCCcce
Confidence                     1  567899999999999655 4433

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.79  E-value=2e-19  Score=156.82  Aligned_cols=114  Identities=19%  Similarity=0.386  Sum_probs=101.9

Q ss_pred             cccccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecC----------
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD----------  105 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D----------  105 (428)
                      .+|..+|+| +.+.+|+++++++++||+++|+||++||++|+.++|.|++++++++  +  +.+++|++|          
T Consensus        12 ~~g~~~p~~~l~~~~g~~~~l~~~~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~--~--v~vv~i~~d~~~~~~~~~~   87 (165)
T 3ha9_A           12 EVLEREASFSLTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR--E--ISVIAIDFWTAEALKALGL   87 (165)
T ss_dssp             HHHHHHHCCCEEBTTSCEECGGGCCSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT--T--EEEEEEECCSHHHHHHHTC
T ss_pred             cccCcCCCCEeecCCCCEeeHHHhCCCEEEEEEECCCCcchhhhHHHHHHHHHHcC--C--cEEEEEEeccccccccccc
Confidence            568999999 9999999999999999999999999999999999999999999998  4  999999999          


Q ss_pred             --------CChHHHHHHHhcCCCceec-cCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCccc
Q 014225          106 --------EDLNAFNNYRACMPWLAVP-YSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATL  160 (428)
Q Consensus       106 --------~~~~~~~~~~~~~~~~~~~-~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~  160 (428)
                              .+.+.+++|++++++..++ +.+ +  ..+.+.|++.++|+++|||+   +|+++.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~--~~~~~~~~v~~~P~~~lid~---~G~i~~  145 (165)
T 3ha9_A           88 NKPGYPPPDTPEMFRKFIANYGDPSWIMVMD-D--GSLVEKFNVRSIDYIVIMDK---SSNVLY  145 (165)
T ss_dssp             CSTTSCCCCCHHHHHHHHHHHSCTTSEEEEC-C--SHHHHHTTCCSSSEEEEEET---TCCEEE
T ss_pred             ccccCCCCCCHHHHHHHHHHcCCCCeeEEeC-h--HHHHHHhCCCCceEEEEEcC---CCcEEE
Confidence                    7889999999987652222 223 2  78999999999999999999   999986

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.78  E-value=4.5e-19  Score=153.61  Aligned_cols=115  Identities=15%  Similarity=0.254  Sum_probs=99.1

Q ss_pred             cccccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHH
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYR  115 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~  115 (428)
                      ..|..+|+| +.+.+|+.+++++++||+++|+||++||++|+.++|.|+++++++++.+  +.+++|+.|..   +++++
T Consensus        16 ~~G~~~p~f~l~~~~g~~~~l~~~~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~v~v~~d~~---~~~~~   90 (158)
T 3hdc_A           16 RTGALAPNFKLPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGD--LVVLAVNVEKR---FPEKY   90 (158)
T ss_dssp             CTTSBCCCCEEECTTSCEEESGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTS--EEEEEEECSSS---CCGGG
T ss_pred             CCCCcCCCceeEcCCCCEEehHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCC--eEEEEEeCCHH---HHHHH
Confidence            469999999 9999999999999999999999999999999999999999999998765  99999999873   56677


Q ss_pred             hcCCCceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          116 ACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       116 ~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +++++....+.+.+  ..+.+.|++.++|+++|||+   +|+++..
T Consensus        91 ~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~---~G~i~~~  131 (158)
T 3hdc_A           91 RRAPVSFNFLSDAT--GQVQQRYGANRLPDTFIVDR---KGIIRQR  131 (158)
T ss_dssp             GGCCCSCEEEECTT--SHHHHHTTCCSSSEEEEECT---TSBEEEE
T ss_pred             HHcCCCceEEECch--HHHHHHhCCCCcceEEEEcC---CCCEEEE
Confidence            76664322222333  68999999999999999999   9998865

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.78  E-value=4.7e-19  Score=154.91  Aligned_cols=116  Identities=20%  Similarity=0.185  Sum_probs=101.4

Q ss_pred             hhccCCCCccc-CC--CCCceeccccc-CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEc
Q 014225          201 LLTNHDRGYLL-GH--PPDEKVPVSSL-VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST  276 (428)
Q Consensus       201 ~~g~~~p~f~l-~~--~g~~~v~l~~~-~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~  276 (428)
                      .+|.++|+|++ +.  +|+ .+.++++ +||++||+||++||++|+.+.|.|++++++             ++.+++|++
T Consensus        23 ~~G~~~P~f~l~~~~~~g~-~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~-------------~v~vv~v~~   88 (168)
T 2b1k_A           23 LIGKPVPKFRLESLDNPGQ-FYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-------------GIRVVGMNY   88 (168)
T ss_dssp             TTTSBCCCCEEEESSSTTC-EEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT-------------TCCEEEEEE
T ss_pred             ccCCcCCCeEeecccCCCc-EeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC-------------CCEEEEEEC
Confidence            47999999999 88  898 9999885 899999999999999999999999888764             378999999


Q ss_pred             CCCHHHHHHHHhcCCccccc-cCCcchhHHHHhcCcCccceEEEECCCCcEEeccc
Q 014225          277 DRDQTSFESYFGTMPWLALP-FGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       277 d~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~  331 (428)
                      |.+.+.+++|+..++ +.++ +..|....+++.|++.++|+++|||++|+++.+..
T Consensus        89 ~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~  143 (168)
T 2b1k_A           89 KDDRQKAISWLKELG-NPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHA  143 (168)
T ss_dssp             SCCHHHHHHHHHHHC-CCCSEEEEETTCHHHHHHTCCSSSEEEEECTTSBEEEEEE
T ss_pred             CCChHHHHHHHHHcC-CCCceeeECcchHHHHHcCccccCEEEEECCCCeEEEEEe
Confidence            989999999998776 4455 34567788999999999999999999999998753

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=99.78  E-value=6.3e-19  Score=155.00  Aligned_cols=121  Identities=23%  Similarity=0.283  Sum_probs=101.9

Q ss_pred             cccccc-Cc-cccCCCCEEecccCCCCEEEEEEecCCCh-hhhhhHHHHHHHHHHHhcCCCcEEEEEEecC--CChHHHH
Q 014225           38 LASKDR-DY-LLNQHGTQVKVSDLEGKVTALYFSANWYP-PCGNFTGVLVDVYEELRNNGSDFEVVFVSSD--EDLNAFN  112 (428)
Q Consensus        38 ~g~~~p-df-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D--~~~~~~~  112 (428)
                      +|..+| +| |.+.+|+++++++++||+++|+||++||+ +|..++|.|+++++++++.+.++++|+|++|  ++.+.++
T Consensus         3 ~G~~~P~~f~l~d~~G~~v~l~~~~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~   82 (170)
T 3me7_A            3 LGTYVPGDITLVDSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIK   82 (170)
T ss_dssp             TTCBCCTTCEEEETTCCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHH
T ss_pred             CCCcCCCCeEEEcCCcCEEchHHhCCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHH
Confidence            688999 99 99999999999999999999999999998 6999999999999999865556999999998  4667889


Q ss_pred             HHHhcCC-----CceeccCChHHHHHHHhhcCC---------CCCceEEEEcCCCCCCCcccc
Q 014225          113 NYRACMP-----WLAVPYSDLETKKALNRKFDI---------EGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       113 ~~~~~~~-----~~~~~~~d~~~~~~l~~~~~v---------~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +|.++++     |..+...+.+....+++.||+         ...|+++|||+   +|+++..
T Consensus        83 ~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~---~G~i~~~  142 (170)
T 3me7_A           83 RFQKEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSP---ELQIKDY  142 (170)
T ss_dssp             HHHHHTTCCSSSEEEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECT---TSBEEEE
T ss_pred             HHHHHcCCCCCCeEEEeCCCHHHHHHHHHHCCeEEecCCCccccCceEEEECC---CCeEEEE
Confidence            9998876     322222354555889988774         56789999999   9999855

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=99.78  E-value=2e-19  Score=159.58  Aligned_cols=121  Identities=17%  Similarity=0.135  Sum_probs=100.1

Q ss_pred             cccccccccccCc-cccCCCCEEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHH
Q 014225           33 RFSSLLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA  110 (428)
Q Consensus        33 ~~~~~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~  110 (428)
                      +....+|..+|+| |.+.+|++++|++++||+++|+|| ++||++|+.++|.|++++++|++.+  ++|++|+.|. .+.
T Consensus        22 ~~Gd~ig~~aP~f~l~~~~G~~v~l~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~--~~vv~Vs~D~-~~~   98 (179)
T 3ixr_A           22 NIGDTLNHSLLNHPLMLSGSTCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQIN--ATVLGVSRDS-VKS   98 (179)
T ss_dssp             CTTCBCCHHHHHCCEEEGGGEEECGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTT--EEEEEEESCC-HHH
T ss_pred             CcCcccCCcCCCeeEECCCCCEEeHHHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCC-HHH
Confidence            3444455559999 999999999999999999999998 9999999999999999999999887  9999999985 556


Q ss_pred             HHHHHhcCCCceeccCChHHHHHHHhhcCCCC------------CceEEEEcCCCCCCCcccc
Q 014225          111 FNNYRACMPWLAVPYSDLETKKALNRKFDIEG------------IPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       111 ~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~------------~P~~~lid~~~~dG~i~~~  161 (428)
                      .++|+++++..+..+.|.+  ..+++.|++..            +|+++|||+   +|+|+..
T Consensus        99 ~~~~~~~~~~~f~~l~D~~--~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~---~G~I~~~  156 (179)
T 3ixr_A           99 HDSFCAKQGFTFPLVSDSD--AILCKAFDVIKEKTMYGRQVIGIERSTFLIGP---THRIVEA  156 (179)
T ss_dssp             HHHHHHHHTCCSCEEECTT--CHHHHHTTCEEEECCC--CEEEECCEEEEECT---TSBEEEE
T ss_pred             HHHHHHHcCCceEEEECCc--hHHHHHcCCcccccccCcccCCcceEEEEECC---CCEEEEE
Confidence            8888887654222222433  68899999853            699999999   9999865

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=99.78  E-value=4.6e-20  Score=161.36  Aligned_cols=117  Identities=19%  Similarity=0.288  Sum_probs=100.3

Q ss_pred             ccccccCc-cccCCCCEEecccC--CCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHH
Q 014225           38 LASKDRDY-LLNQHGTQVKVSDL--EGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNN  113 (428)
Q Consensus        38 ~g~~~pdf-l~~~~G~~v~l~~~--~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~  113 (428)
                      +|+.+||| |.+.+|++++|+++  +||+++|+|| ++||++|+.++|.|++++++|++.|  +++++||.|. .+..++
T Consensus         7 vG~~aPdF~l~~~~G~~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~--v~vv~is~d~-~~~~~~   83 (164)
T 4gqc_A            7 LGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKAN--AEVLAISVDS-PWCLKK   83 (164)
T ss_dssp             TTSBCCCCEEEBTTSCEEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSS--SEEEEEESSC-HHHHHH
T ss_pred             CCCCCcCcEeECCCCCEEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccC--ceEEEecCCC-HHHHHH
Confidence            69999999 99999999999998  8999888888 9999999999999999999999987  9999999874 566888


Q ss_pred             HHhcCCCceeccCChHHHHHHHhhcCCC----------CCceEEEEcCCCCCCCccccc
Q 014225          114 YRACMPWLAVPYSDLETKKALNRKFDIE----------GIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       114 ~~~~~~~~~~~~~d~~~~~~l~~~~~v~----------~~P~~~lid~~~~dG~i~~~~  162 (428)
                      |.+++++.+.-.+|.+  ..+++.||+.          ..|+++|||+   +|+|++..
T Consensus        84 ~~~~~~~~fp~l~D~~--~~v~~~ygv~~~~~~~~~~~~~p~tflID~---~G~I~~~~  137 (164)
T 4gqc_A           84 FKDENRLAFNLLSDYN--REVIKLYNVYHEDLKGLKMVAKRAVFIVKP---DGTVAYKW  137 (164)
T ss_dssp             HHHHTTCCSEEEECTT--SHHHHHTTCEEEEETTEEEEECCEEEEECT---TSBEEEEE
T ss_pred             HHHhcCcccceeecCc--hHHHHHcCCcccccccCcCCeeeEEEEECC---CCEEEEEE
Confidence            8887765322233554  7899999983          4789999999   99998764

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=99.78  E-value=1.1e-19  Score=162.37  Aligned_cols=119  Identities=12%  Similarity=0.146  Sum_probs=94.7

Q ss_pred             ccccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecC-------CChH
Q 014225           38 LASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-------EDLN  109 (428)
Q Consensus        38 ~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D-------~~~~  109 (428)
                      .+..+||| |.+.+|+++++++++||+|||+||++||++|+.++|.|++++++|++++  +++|+|++|       .+.+
T Consensus        22 ~~~~~p~f~l~d~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~--~~vi~is~d~~~~~e~~~~~   99 (187)
T 3dwv_A           22 AASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQG--FTVLAFPSNQFGGQEPGNEE   99 (187)
T ss_dssp             TCCSGGGSCCBBTTSCBCCGGGGTTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGT--CEEEEEEBCCCSSCSSSBTT
T ss_pred             CCCccCCeEEEcCCCCEeeHHHhCCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCC--eEEEEEECcccCCCCCCCHH
Confidence            36789999 9999999999999999999999999999999999999999999999987  999999998       4567


Q ss_pred             HHHHHHhc-CCC--ceeccCChH--HHHHHH--------hhcCCCCCc---eEEEEcCCCCCCCcccc
Q 014225          110 AFNNYRAC-MPW--LAVPYSDLE--TKKALN--------RKFDIEGIP---CLVVLQPYDDKDDATLH  161 (428)
Q Consensus       110 ~~~~~~~~-~~~--~~~~~~d~~--~~~~l~--------~~~~v~~~P---~~~lid~~~~dG~i~~~  161 (428)
                      .+++|+++ ++.  ..+...+..  ....+.        ..+++..+|   +++|||+   +|+++..
T Consensus       100 ~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~---~G~i~~~  164 (187)
T 3dwv_A          100 EIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDR---DGVPVER  164 (187)
T ss_dssp             HHHHSCCBCCCCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECT---TSCEEEE
T ss_pred             HHHHHHHhccCCCCceeeccccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECC---CCCEEEE
Confidence            88888883 343  222100111  001111        455777888   9999999   9999866

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.78  E-value=5.2e-19  Score=157.40  Aligned_cols=118  Identities=21%  Similarity=0.316  Sum_probs=101.0

Q ss_pred             cccccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCC-hHHHHHH
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED-LNAFNNY  114 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~-~~~~~~~  114 (428)
                      ..|..+|+| |.+.+|+++++++++||+++|+||++||++|+.++|.|+++++++++.+  +++++|++|.+ .+.++++
T Consensus        35 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~d~~~~~~~~~~  112 (186)
T 1jfu_A           35 SAPLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPN--FEVVAINIDTRDPEKPKTF  112 (186)
T ss_dssp             CSCCBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTT--EEEEEEECCCSCTTHHHHH
T ss_pred             cCCCcCCCcEeEcCCCCEeeHHHcCCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCC--cEEEEEECCCCCHHHHHHH
Confidence            468899999 9999999999999999999999999999999999999999999998765  99999999875 4678888


Q ss_pred             HhcCCCceecc-CChHHHHHHHhhcCCC----CCceEEEEcCCCCCCCcccc
Q 014225          115 RACMPWLAVPY-SDLETKKALNRKFDIE----GIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       115 ~~~~~~~~~~~-~d~~~~~~l~~~~~v~----~~P~~~lid~~~~dG~i~~~  161 (428)
                      ++++++..+++ .|.+  ..+.+.|++.    ++|+++|||+   +|+++..
T Consensus       113 ~~~~~~~~~~~~~d~~--~~~~~~~~~~~~~~~~P~~~lid~---~G~i~~~  159 (186)
T 1jfu_A          113 LKEANLTRLGYFNDQK--AKVFQDLKAIGRALGMPTSVLVDP---QGCEIAT  159 (186)
T ss_dssp             HHHTTCCTTCCEECTT--CHHHHHHHTTTCCSSSSEEEEECT---TSBEEEE
T ss_pred             HHHcCCCCCceEECCc--chHHHHhccccccCCCCEEEEECC---CCCEEEE
Confidence            88877532332 2333  6778888875    8999999999   9999865

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=99.78  E-value=6.5e-19  Score=156.22  Aligned_cols=120  Identities=12%  Similarity=0.082  Sum_probs=95.1

Q ss_pred             cccccccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCC-------
Q 014225           35 SSLLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-------  106 (428)
Q Consensus        35 ~~~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~-------  106 (428)
                      .+..|..+|+| |.+.+|+++++++++||+|||+||++||++|+.++|.|++++++|++++  ++|++|++|.       
T Consensus        11 ~~~~~~~~p~f~l~d~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~--~~vi~is~d~~~~~~~d   88 (180)
T 3kij_A           11 LKPKINSFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSH--FSVLAFPCNQFGESEPR   88 (180)
T ss_dssp             CCCCCCCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTS--EEEEEEECCCSTTCCCS
T ss_pred             hcCCcCcccceEEecCCCCEecHHHcCCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCC--eEEEEEECCccccCCCC
Confidence            34568899999 9999999999999999999999999999999999999999999999887  9999999875       


Q ss_pred             ChHHHHHHHhc-CCCceeccC-----ChH---HHHHHHhhcCCCCCce----EEEEcCCCCCCCcccc
Q 014225          107 DLNAFNNYRAC-MPWLAVPYS-----DLE---TKKALNRKFDIEGIPC----LVVLQPYDDKDDATLH  161 (428)
Q Consensus       107 ~~~~~~~~~~~-~~~~~~~~~-----d~~---~~~~l~~~~~v~~~P~----~~lid~~~~dG~i~~~  161 (428)
                      +.+.+++|+++ +++.+..+.     +..   ....+..  ...++|+    ++|||+   +|+++..
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~~~p~~~~~~~lid~---~G~i~~~  151 (180)
T 3kij_A           89 PSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVD--SSKKEPRWNFWKYLVNP---EGQVVKF  151 (180)
T ss_dssp             CHHHHHHHHHHHHCCCSCBBCCCCCSSTTCCHHHHHHHH--HHTCCCSSTTCEEEECT---TSCEEEE
T ss_pred             CHHHHHHHHHHhcCCCCceeeeeeccCccccHHHHHHHh--cCCCCccccceEEEECC---CCCEEEE
Confidence            77888999987 653211111     111   0011111  1346888    999999   9999866

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.78  E-value=1.2e-18  Score=188.61  Aligned_cols=205  Identities=11%  Similarity=0.086  Sum_probs=135.0

Q ss_pred             CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225           61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI  140 (428)
Q Consensus        61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v  140 (428)
                      +++++|.||++||++|+...|.+.++++++++.   +.++.|+.+..                        ..+++.|++
T Consensus       563 ~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~~~---v~~~~vd~~~~------------------------~~l~~~~~v  615 (780)
T 3apo_A          563 DEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGL---INVGSVDCGQY------------------------HSFCTQENV  615 (780)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEETTTT------------------------HHHHHHTTC
T ss_pred             CCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCC---eEEEEEECcch------------------------HHHHHHcCC
Confidence            568999999999999999999999999999864   66666544322                        678889999


Q ss_pred             CCCceEEEEcCCCCCCCcccccchhhhhhcccCccccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCcccCCCCCceec
Q 014225          141 EGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPDEKVP  220 (428)
Q Consensus       141 ~~~P~~~lid~~~~dG~i~~~~~~~~i~~~g~~~~p~t~~~~~~l~~~~~~~~~~~~~~~~~g~~~p~f~l~~~g~~~v~  220 (428)
                      .++|+++++..   ++... ....    .|  .....+..   .+..             .+....+......++. .+.
T Consensus       616 ~~~Pti~~~~~---~~~~~-~~~~----~y--~g~~~~~~---~l~~-------------fi~~~~~~~v~~l~~~-~~~  668 (780)
T 3apo_A          616 QRYPEIRFYPQ---KSSKA-YQYH----SY--NGWNRDAY---SLRS-------------WGLGFLPQASIDLTPQ-TFN  668 (780)
T ss_dssp             CSSSEEEEECC---CSSSC-CSCE----EC--CCSCCSHH---HHHH-------------HHHTTSCCCSEEECHH-HHH
T ss_pred             CCCCeEEEEcC---CCcCc-cchh----hc--CCCCCCHH---HHHH-------------HHhhhcccccccCCHH-HHH
Confidence            99999999986   33210 0000    00  00011111   1111             1111112211122333 331


Q ss_pred             -ccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCC
Q 014225          221 -VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGD  299 (428)
Q Consensus       221 -l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~  299 (428)
                       .-.-.+++++|+||++||++|+.+.|.|.+++++++++          +.++.|+++..                    
T Consensus       669 ~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~la~~~~~~----------~~~~~vd~~~~--------------------  718 (780)
T 3apo_A          669 EKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGK----------VRAGKVDCQAY--------------------  718 (780)
T ss_dssp             HHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT----------CEEEEEETTTC--------------------
T ss_pred             HHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC----------ceEEEEECCCC--------------------
Confidence             11124689999999999999999999999999998654          88999988755                    


Q ss_pred             cchhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhc
Q 014225          300 PTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKN  363 (428)
Q Consensus       300 d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~  363 (428)
                         ..+++.|+|.++|+++++ ++|+++.+..+..   +|    ..+   .++|.+.|+++++.
T Consensus       719 ---~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~G~~---~g----~~~---~~~l~~~l~~~l~~  768 (780)
T 3apo_A          719 ---PQTCQKAGIKAYPSVKLY-QYERAKKSIWEEQ---IN----SRD---AKTIAALIYGKLET  768 (780)
T ss_dssp             ---HHHHHHTTCCSSSEEEEE-EEETTTTEEEEEE---EC----CCC---HHHHHHHHHHHTTC
T ss_pred             ---HHHHHhcCCCcCCEEEEE-cCCCccccccCcc---cC----CcC---HHHHHHHHHHHHHH
Confidence               578999999999999999 8887664422210   01    122   35566777766643

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=99.78  E-value=1.9e-18  Score=150.19  Aligned_cols=117  Identities=18%  Similarity=0.286  Sum_probs=99.8

Q ss_pred             cccCc-cccCCCCEEecccCCCCEEEEEEecCCChh-hhhhHHHHHHHHHHHhcC--CCcEEEEEEecCC---ChHHHHH
Q 014225           41 KDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPP-CGNFTGVLVDVYEELRNN--GSDFEVVFVSSDE---DLNAFNN  113 (428)
Q Consensus        41 ~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~~~--~~~~~ii~vs~D~---~~~~~~~  113 (428)
                      .+|+| |.+.+|+++++++++||+++|+||++||++ |+.++|.|+++++++++.  ..++++++|++|.   +.+.+++
T Consensus         2 ~ap~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~   81 (164)
T 2ggt_A            2 LGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIAN   81 (164)
T ss_dssp             CCCCCEEEETTSCEEEGGGGTTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHH
T ss_pred             CCCCeEEEeCCCCEEeHHHcCCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHH
Confidence            47999 999999999999999999999999999998 999999999999999872  0139999999986   3677899


Q ss_pred             HHhcCC--CceeccCChHHHHHHHhhcCCCCCc---------------eEEEEcCCCCCCCcccc
Q 014225          114 YRACMP--WLAVPYSDLETKKALNRKFDIEGIP---------------CLVVLQPYDDKDDATLH  161 (428)
Q Consensus       114 ~~~~~~--~~~~~~~d~~~~~~l~~~~~v~~~P---------------~~~lid~~~~dG~i~~~  161 (428)
                      |+++++  |..+.. +.+....+.+.|++..+|               +++|||+   +|+++..
T Consensus        82 ~~~~~~~~~~~l~~-~~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~---~G~i~~~  142 (164)
T 2ggt_A           82 YVKEFSPKLVGLTG-TREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGP---DGEFLDY  142 (164)
T ss_dssp             HHHTTCSSCEEEEC-CHHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECT---TSCEEEE
T ss_pred             HHHHcCCCeEEEeC-CHHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECC---CCeEEEE
Confidence            998765  433332 445557899999999999               8999999   9999865

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=99.78  E-value=4.3e-19  Score=154.46  Aligned_cols=118  Identities=21%  Similarity=0.236  Sum_probs=101.7

Q ss_pred             cccccccCc---cccCCCCEEecccCCCCEEEEEEec-CCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHH
Q 014225           37 LLASKDRDY---LLNQHGTQVKVSDLEGKVTALYFSA-NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN  112 (428)
Q Consensus        37 ~~g~~~pdf---l~~~~G~~v~l~~~~gk~vlv~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~  112 (428)
                      .+|..+|+|   |.+.+|+++++++++||+++|+||+ +||++|+.++|.|++++++|++.|  +++++|+.| +.+.++
T Consensus         8 ~~G~~~P~f~~~l~~~~G~~~~l~~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~--~~vv~vs~d-~~~~~~   84 (163)
T 3gkn_A            8 VLELPAATFDLPLSLSGGTQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAG--AKILGVSRD-SVKSHD   84 (163)
T ss_dssp             CCCCCGGGGGCCEECSTTCEECSGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTT--CEEEEEESS-CHHHHH
T ss_pred             ccCCcCCCccccccCCCCCEEEHHHhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCC--CEEEEEeCC-CHHHHH
Confidence            469999999   6799999999999999999999998 999999999999999999999987  999999998 677788


Q ss_pred             HHHhcCCCceeccCChHHHHHHHhhcCCCC------------CceEEEEcCCCCCCCccccc
Q 014225          113 NYRACMPWLAVPYSDLETKKALNRKFDIEG------------IPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       113 ~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~------------~P~~~lid~~~~dG~i~~~~  162 (428)
                      +|.+++++....+.|.+  ..+.+.|++..            +|+++|||+   +|+|+...
T Consensus        85 ~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~---~G~i~~~~  141 (163)
T 3gkn_A           85 NFCAKQGFAFPLVSDGD--EALCRAFDVIKEKNMYGKQVLGIERSTFLLSP---EGQVVQAW  141 (163)
T ss_dssp             HHHHHHCCSSCEEECTT--CHHHHHTTCEEEEEETTEEEEEECCEEEEECT---TSCEEEEE
T ss_pred             HHHHHhCCCceEEECCc--HHHHHHhCCccccccccccccCcceEEEEECC---CCeEEEEE
Confidence            99887664322223433  68899999977            999999999   99998653

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=99.78  E-value=5.3e-19  Score=155.29  Aligned_cols=122  Identities=16%  Similarity=0.216  Sum_probs=98.8

Q ss_pred             cccccccCc-cccCCCCEEecccCCCCEEEEEEecCCCh-hhhhhHHHHHHHHHHHhcCCCcEEEEEEecC---CChHHH
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYP-PCGNFTGVLVDVYEELRNNGSDFEVVFVSSD---EDLNAF  111 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D---~~~~~~  111 (428)
                      .+|..+|+| |.+.+|+++++++++||+++|+||++||+ +|+.++|.|.++++++++.+.++++|+|++|   .+.+.+
T Consensus         8 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~   87 (174)
T 1xzo_A            8 PLNYEVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQL   87 (174)
T ss_dssp             CCCEECCCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHH
T ss_pred             ccccccCCcEEEcCCCCEEehhhcCCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHH
Confidence            468999999 99999999999999999999999999999 9999999999999999987556999999998   467888


Q ss_pred             HHHHhcCCCce---eccCC--hHHHHHHHh------------hcCCCCCceEEEEcCCCCCCCcccc
Q 014225          112 NNYRACMPWLA---VPYSD--LETKKALNR------------KFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       112 ~~~~~~~~~~~---~~~~d--~~~~~~l~~------------~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      ++|+++++...   ....+  ......+..            .|++..+|+++|||+   +|+++..
T Consensus        88 ~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~---~G~i~~~  151 (174)
T 1xzo_A           88 KKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGP---DGKVLKD  151 (174)
T ss_dssp             HHHHTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECT---TSEEEEE
T ss_pred             HHHHHHcCCCCcceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECC---CCeEEEE
Confidence            99999877432   11123  221122221            145788999999999   9999865

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.78  E-value=6e-19  Score=157.36  Aligned_cols=117  Identities=16%  Similarity=0.199  Sum_probs=101.2

Q ss_pred             cccccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecC-------CCh
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-------EDL  108 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D-------~~~  108 (428)
                      .+|..+|+| |.+.+|+++++++++||+++|+||++||++|+.++|.|++++++|+++   +++++|+.|       .+.
T Consensus         8 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~---~~~v~v~~d~~~~~~~d~~   84 (188)
T 2cvb_A            8 PLESPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK---VAFVGINANDYEKYPEDAP   84 (188)
T ss_dssp             CTTCBCCCCEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT---EEEEEEECCCTTTCGGGSH
T ss_pred             CCCCCCCCceeecCCCCEEeHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcC---eEEEEEEcCccccccccCH
Confidence            368899999 999999999999999999999999999999999999999999999864   999999986       466


Q ss_pred             HHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          109 NAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.+++|++++++....+.|.+  ..+.+.|++.++|+++|||+   +|+++..
T Consensus        85 ~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~---~G~i~~~  132 (188)
T 2cvb_A           85 EKMAAFAEEHGIFFPYLLDET--QEVAKAYRALRTPEVFLFDE---RRLLRYH  132 (188)
T ss_dssp             HHHHHHHHHHTCCSCEEECSS--SHHHHHTTCCEESEEEEECT---TCBEEEE
T ss_pred             HHHHHHHHHhCCCceEEECCc--chHHHHcCCCCCCeEEEECC---CCcEEEE
Confidence            788999987664222222333  68899999999999999999   9999876

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=99.78  E-value=6.4e-19  Score=162.64  Aligned_cols=140  Identities=11%  Similarity=0.116  Sum_probs=113.3

Q ss_pred             hhccCCCCccc-CCCCCceecccccCCc-EEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC
Q 014225          201 LLTNHDRGYLL-GHPPDEKVPVSSLVGK-TVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD  277 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g~~~v~l~~~~gk-~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d  277 (428)
                      .+|.++|+|++ +.+|  .+++++++|+ ++||+|| ++|||+|..+++.|.+++++|+++         +++||+||+|
T Consensus         4 ~iG~~aPdF~l~~~~G--~v~l~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~---------~v~vigIS~D   72 (233)
T 2v2g_A            4 TLGEVFPNFEADSTIG--KLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKR---------GVKLIALSCD   72 (233)
T ss_dssp             CTTCBCCCCEEEETTC--CEEHHHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHT---------TEEEEEEESS
T ss_pred             CCCCCCCCcEEecCCC--CEEHHHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHc---------CCEEEEEcCC
Confidence            36999999999 8888  6999999997 9999998 899999999999999999999877         8999999999


Q ss_pred             CCHHHHHHHHh------cCC-ccccccCCcchhHHHHhcCcC------------ccceEEEECCCCcEEeccccchhhcc
Q 014225          278 RDQTSFESYFG------TMP-WLALPFGDPTIKELTKYFDVQ------------GIPCLVIIGPEGKTVTKQGRNLINLY  338 (428)
Q Consensus       278 ~~~~~~~~~~~------~~~-~~~~~~~~d~~~~~~~~~~v~------------~~P~~~lid~~G~i~~~~~~~~~~~~  338 (428)
                      . ....++|.+      ..+ .++||+..|....+++.||+.            .+|++||||++|+|+....+.+    
T Consensus        73 ~-~~~~~~~~~~i~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~----  147 (233)
T 2v2g_A           73 N-VADHKEWSEDVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYPA----  147 (233)
T ss_dssp             C-HHHHHHHHHHHHHHHTCCSSCSSCEEECTTCHHHHHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEEEEECT----
T ss_pred             C-HHHHHHHHHHHHHhhCcccCCceEEEECChHHHHHHhCCcCcccccCCCcccccceEEEECCCCEEEEEEecCC----
Confidence            4 555566665      341 478899989889999999985            5799999999999999853321    


Q ss_pred             cccCCCCChHHHHHHHHHHHHHHh
Q 014225          339 QENAYPFTEAKLEFLEKQMEEEAK  362 (428)
Q Consensus       339 g~~~~p~~~~~~~~L~~~l~~~~~  362 (428)
                         .   .....++|.+.|+.+..
T Consensus       148 ---~---~gr~~~eilr~l~~Lq~  165 (233)
T 2v2g_A          148 ---T---TGRNFSEILRVIDSLQL  165 (233)
T ss_dssp             ---T---BCCCHHHHHHHHHHHHH
T ss_pred             ---C---CCCCHHHHHHHHHHHHh
Confidence               1   11235667777766543

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=99.78  E-value=3.4e-19  Score=162.30  Aligned_cols=136  Identities=8%  Similarity=0.056  Sum_probs=110.6

Q ss_pred             hccCCCCccc-CCCCCceecccccCCcEEEEEEeccC-ChhHH-----hhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEE
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARW-CIPCE-----KFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV  274 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~w-C~~C~-----~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~i  274 (428)
                      +|.++|+|++ +.+|+ .+++++++||++||+||+.| ||+|.     .+++.|.++   |  .         ++.||+|
T Consensus        24 vG~~APdFtL~d~~G~-~vsLsd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~--~---------gv~VvgI   88 (224)
T 3keb_A           24 KGDYLPSFMLVDDQKH-DAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W--P---------HLKLIVI   88 (224)
T ss_dssp             TTCBCCCCEEEETTSC-EEEGGGGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C--T---------TSEEEEE
T ss_pred             CCCCCCCeEEECCCCC-EEeHHHhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c--C---------CCEEEEE
Confidence            5999999999 99999 99999999999999999987 99999     888888776   4  3         6899999


Q ss_pred             EcCCCHHHHHHHHhcCCccccccCCcc-hhHHHHhcCcCc---------cceEEEECCCCcEEeccccchhhcccccCCC
Q 014225          275 STDRDQTSFESYFGTMPWLALPFGDPT-IKELTKYFDVQG---------IPCLVIIGPEGKTVTKQGRNLINLYQENAYP  344 (428)
Q Consensus       275 s~d~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~v~~---------~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p  344 (428)
                      |+| +....++|..+.+..+||++.|. +..+++.||+..         .|++||||++|+|++.+....         +
T Consensus        89 S~D-s~~~~~~f~~~~gl~~fplLsD~~~~~vak~yGv~~~~~~~~G~~~p~tfvID~dG~I~~~~~~~~---------~  158 (224)
T 3keb_A           89 TVD-SPSSLARARHEHGLPNIALLSTLRGRDFHKRYGVLITEYPLSGYTSPAIILADAANVVHYSERLAN---------T  158 (224)
T ss_dssp             ESS-CHHHHHHHHHHHCCTTCEEEESTTCTTHHHHTTCBCCSTTSTTCBCCEEEEECTTCBEEEEEECSB---------T
T ss_pred             ECC-CHHHHHHHHHHcCCCCceEEEcCCchHHHHHhCCccccccccCCccCEEEEEcCCCEEEEEEecCC---------C
Confidence            998 67788889888774479999997 699999999964         799999999999999864332         1


Q ss_pred             CChHHHHHHHHHHHHHHh
Q 014225          345 FTEAKLEFLEKQMEEEAK  362 (428)
Q Consensus       345 ~~~~~~~~L~~~l~~~~~  362 (428)
                      ......+++.+.|+++..
T Consensus       159 ~~~pd~~evl~~L~~l~~  176 (224)
T 3keb_A          159 RDFFDFDAIEKLLQEGEQ  176 (224)
T ss_dssp             TCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhhh
Confidence            222234555555655543

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.78  E-value=1.3e-18  Score=149.47  Aligned_cols=114  Identities=16%  Similarity=0.266  Sum_probs=92.5

Q ss_pred             cccCccccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCC
Q 014225           41 KDRDYLLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPW  120 (428)
Q Consensus        41 ~~pdfl~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~  120 (428)
                      .+|+|....+|+++++++++||+++|+||++||++|+.++|.|+++++++++.+  +++++|++|. .+.+++|++++++
T Consensus         4 pa~~~~~~~~G~~~~l~~~~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~--v~vv~v~~d~-~~~~~~~~~~~~~   80 (151)
T 3raz_A            4 SADELAGWKDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGS--VDMVGIALDT-SDNIGNFLKQTPV   80 (151)
T ss_dssp             ---CEEETTTCCEECGGGCCSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTT--EEEEEEESSC-HHHHHHHHHHSCC
T ss_pred             CcchhhcccCCCEecHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCC--eEEEEEECCC-hHHHHHHHHHcCC
Confidence            455552238999999999999999999999999999999999999999997766  9999999975 5668999987664


Q ss_pred             --ceeccCChHHHHHHHhhcC--CCCCceEEEEcCCCCCCCcccc
Q 014225          121 --LAVPYSDLETKKALNRKFD--IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       121 --~~~~~~d~~~~~~l~~~~~--v~~~P~~~lid~~~~dG~i~~~  161 (428)
                        ..+..... ....+.+.|+  +.++|+++|||+   +|+++..
T Consensus        81 ~~~~~~~~~~-~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~  121 (151)
T 3raz_A           81 SYPIWRYTGA-NSRNFMKTYGNTVGVLPFTVVEAP---KCGYRQT  121 (151)
T ss_dssp             SSCEEEECCS-CHHHHHHTTTCCSCCSSEEEEEET---TTTEEEE
T ss_pred             CCceEecCcc-chHHHHHHhCCccCCCCEEEEECC---CCcEEEE
Confidence              33322222 2378999999  999999999999   9998765

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.77  E-value=1.7e-18  Score=178.13  Aligned_cols=66  Identities=21%  Similarity=0.388  Sum_probs=58.2

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+++++|.|||+||++|+.+.|.+.++++++++.+  +.++.|+.+..                        ..+++.|+
T Consensus        30 ~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~--v~~~~vd~~~~------------------------~~l~~~~~   83 (504)
T 2b5e_A           30 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKN--ITLAQIDCTEN------------------------QDLCMEHN   83 (504)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTT--CEEEEEETTTC------------------------HHHHHHTT
T ss_pred             cCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCC--eEEEEEECCCC------------------------HHHHHhcC
Confidence            57899999999999999999999999999998754  78888766544                        67999999


Q ss_pred             CCCCceEEEEcC
Q 014225          140 IEGIPCLVVLQP  151 (428)
Q Consensus       140 v~~~P~~~lid~  151 (428)
                      |.++|+++++..
T Consensus        84 v~~~Pt~~~~~~   95 (504)
T 2b5e_A           84 IPGFPSLKIFKN   95 (504)
T ss_dssp             CCSSSEEEEEET
T ss_pred             CCcCCEEEEEeC
Confidence            999999999984

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=99.77  E-value=1.8e-18  Score=152.19  Aligned_cols=125  Identities=16%  Similarity=0.219  Sum_probs=99.1

Q ss_pred             ccccccccccCc-cccCCCCEEecccCCCCEEEEEEecCCCh-hhhhhHHHHHHHHHHHhcCCCcEEEEEEecCC---Ch
Q 014225           34 FSSLLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYP-PCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE---DL  108 (428)
Q Consensus        34 ~~~~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~---~~  108 (428)
                      +...+|.++||| |+|.+|+++++++++||+|+|+||++||+ +|...++.|.++++.+++.+.++++|+|++|.   +.
T Consensus         4 ~~~P~~~~~PdF~L~d~~G~~v~l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~Dtp   83 (170)
T 4hde_A            4 LRKPLNWDLETFQFTNQDGKPFGTKDLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDKP   83 (170)
T ss_dssp             CCSCCCBCCCCCEEECTTSCEEEHHHHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCH
T ss_pred             cccCCCCcCCCcEEECCCCCEEeHHHhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCcccccH
Confidence            445678999999 99999999999999999999999999997 89999999999999999888789999999983   46


Q ss_pred             HHHHHHHhcCC-----CceeccCChHHHHHHH-hhcC----------CCCCceEEEEcCCCCCCCcccc
Q 014225          109 NAFNNYRACMP-----WLAVPYSDLETKKALN-RKFD----------IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       109 ~~~~~~~~~~~-----~~~~~~~d~~~~~~l~-~~~~----------v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.+++|.++++     |..+...+......+. ..|+          +...|+++|||+   +|+++..
T Consensus        84 ~~l~~y~~~~~~~~~~~~~ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~---~G~i~~~  149 (170)
T 4hde_A           84 ENLKAFIQKFTEDTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQ---NGKVMKK  149 (170)
T ss_dssp             HHHHHHHTTTCSCCTTEEEEBCSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECT---TSCEEEE
T ss_pred             HHHHHHHHHcCCCCCCceecCcccHHHHHHHHHhcccccccCCCCceEEeeeEEEEEcC---CCeEEEE
Confidence            77889988753     4444433332212222 2232          345689999999   9998754

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.77  E-value=2.4e-19  Score=159.27  Aligned_cols=119  Identities=11%  Similarity=0.089  Sum_probs=92.7

Q ss_pred             cccccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCC-------Ch
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-------DL  108 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~-------~~  108 (428)
                      .+|..+|+| |.+.+|+++++++++||+++|+||++||++|+.++|.|++++++|++++  +++++|++|.       +.
T Consensus        24 ~~g~~~p~f~l~~~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~--v~vv~vs~d~~~~~e~~~~  101 (181)
T 2p31_A           24 QQEQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHH--FNVLAFPCNQFGQQEPDSN  101 (181)
T ss_dssp             ---CCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCCSTTCCCSCH
T ss_pred             CcCCccCceEeecCCCCEecHHHcCCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCC--EEEEEEECcCCCCCCCCCH
Confidence            468999999 9999999999999999999999999999999999999999999999887  9999999884       66


Q ss_pred             HHHHHHHhc-CCC--ceeccCChHH--HHHHHhhcCCCCCc-------eEEEEcCCCCCCCcccc
Q 014225          109 NAFNNYRAC-MPW--LAVPYSDLET--KKALNRKFDIEGIP-------CLVVLQPYDDKDDATLH  161 (428)
Q Consensus       109 ~~~~~~~~~-~~~--~~~~~~d~~~--~~~l~~~~~v~~~P-------~~~lid~~~~dG~i~~~  161 (428)
                      +.+++|+++ ++.  ..+...+.+.  ...+ -.|.+..+|       +++|||+   +|+++..
T Consensus       102 ~~~~~~~~~~~~~~~p~~~~~d~~g~~~~~~-~~~~~~~~P~~~~~~~~~~lid~---~G~i~~~  162 (181)
T 2p31_A          102 KEIESFARRTYSVSFPMFSKIAVTGTGAHPA-FKYLAQTSGKEPTWNFWKYLVAP---DGKVVGA  162 (181)
T ss_dssp             HHHHHHHHHHHCCCSCBBCCCCCSSTTSCHH-HHHHHHHHSCCCCSTTCEEEECT---TSCEEEE
T ss_pred             HHHHHHHHhhcCCCceeEeecccCCccchhh-hhhhhhcCCCccccceeEEEEcC---CCCEEEE
Confidence            788888876 553  2221012110  0111 124466778       9999999   9999866

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.77  E-value=1.5e-18  Score=145.31  Aligned_cols=112  Identities=18%  Similarity=0.313  Sum_probs=98.9

Q ss_pred             cccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhc
Q 014225           39 ASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRAC  117 (428)
Q Consensus        39 g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~  117 (428)
                      |..+|+| +.+.+|+.+++++++||+++|+||++||++|+.++|.|++++++++  +  +.++.|+.|.+.+.+++++++
T Consensus         2 ~~~~p~~~~~~~~g~~~~l~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~--~--~~~~~v~~~~~~~~~~~~~~~   77 (136)
T 1zzo_A            2 VPAQLQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP--E--VTFVGVAGLDQVPAMQEFVNK   77 (136)
T ss_dssp             CCGGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--T--SEEEEEECSSCHHHHHHHHHH
T ss_pred             CCCCCCcccccCCCCEeeHHHhCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC--C--eEEEEEeCCCCHHHHHHHHHH
Confidence            5678999 9999999999999999999999999999999999999999999987  3  999999999999999999998


Q ss_pred             CCCceec-cCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcc
Q 014225          118 MPWLAVP-YSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDAT  159 (428)
Q Consensus       118 ~~~~~~~-~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~  159 (428)
                      +++..++ +.+..  ..+.+.|++.++|+++++|+   +|+++
T Consensus        78 ~~~~~~~~~~d~~--~~~~~~~~i~~~P~~~~id~---~g~i~  115 (136)
T 1zzo_A           78 YPVKTFTQLADTD--GSVWANFGVTQQPAYAFVDP---HGNVD  115 (136)
T ss_dssp             TTCTTSEEEECTT--CHHHHHTTCCSSSEEEEECT---TCCEE
T ss_pred             cCCCceEEEEcCC--cHHHHHcCCCCCceEEEECC---CCCEE
Confidence            8752222 22332  68899999999999999999   99886

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=99.77  E-value=5.1e-19  Score=153.40  Aligned_cols=120  Identities=16%  Similarity=0.180  Sum_probs=101.5

Q ss_pred             cccccccCc-cccCCCCEEecccCCCC-EEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHH
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSDLEGK-VTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNN  113 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk-~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~  113 (428)
                      .+|..+|+| |.+.+|+++++++++|| +++|+|| ++||++|+.++|.|+++++++++.+  +++++|+.|. .+.+++
T Consensus        10 ~~G~~~p~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~--~~vv~is~d~-~~~~~~   86 (160)
T 1xvw_A           10 NVGATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDD--SAALAISVGP-PPTHKI   86 (160)
T ss_dssp             CTTSBCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSS--EEEEEEESCC-HHHHHH
T ss_pred             CCCCCCCCeEeEcCCCCEEeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--cEEEEEeCCC-HHHHHH
Confidence            368999999 99999999999999998 9999998 9999999999999999999998766  9999999984 567888


Q ss_pred             HHhcCCCceeccCChHHHHHHHhhcCCC----CCc--eEEEEcCCCCCCCccccc
Q 014225          114 YRACMPWLAVPYSDLETKKALNRKFDIE----GIP--CLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       114 ~~~~~~~~~~~~~d~~~~~~l~~~~~v~----~~P--~~~lid~~~~dG~i~~~~  162 (428)
                      |++++++....+.|......+.+.|++.    ++|  +++|||+   +|+++...
T Consensus        87 ~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~~~~~p~~~~~lid~---~G~i~~~~  138 (160)
T 1xvw_A           87 WATQSGFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDR---SGIIRFAE  138 (160)
T ss_dssp             HHHHHTCCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECT---TSBEEEEE
T ss_pred             HHHhcCCCceEEecCCcChHHHHHcCCccccCCCeeeeEEEECC---CCeEEEEE
Confidence            9887765322222420126889999998    999  9999999   99998763

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.77  E-value=1.2e-18  Score=146.19  Aligned_cols=111  Identities=16%  Similarity=0.298  Sum_probs=98.0

Q ss_pred             ccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcC
Q 014225           40 SKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACM  118 (428)
Q Consensus        40 ~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~  118 (428)
                      ..+|+| +.+.+|+.+++++++||+++|+||++||++|+.++|.|++++++++  +  +.+++|+.|.+.+.++++++++
T Consensus         2 ~~~p~~~l~~~~g~~~~l~~~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~--~~~~~v~~~~~~~~~~~~~~~~   77 (136)
T 1lu4_A            2 DERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP--A--VTFVGIATRADVGAMQSFVSKY   77 (136)
T ss_dssp             GGGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--T--SEEEEEECSSCHHHHHHHHHHH
T ss_pred             CCCCCeEeecCCCCeecHHHhCCCEEEEEEECCcChhHHHHHHHHHHHHHHCC--C--cEEEEEEcCCCHHHHHHHHHHc
Confidence            358999 9999999999999999999999999999999999999999999997  3  9999999999999999999987


Q ss_pred             CCceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcc
Q 014225          119 PWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDAT  159 (428)
Q Consensus       119 ~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~  159 (428)
                      ++....+.+.+  ..+.+.|++.++|+++++|+   +|+++
T Consensus        78 ~~~~~~~~d~~--~~~~~~~~i~~~P~~~lid~---~G~i~  113 (136)
T 1lu4_A           78 NLNFTNLNDAD--GVIWARYNVPWQPAFVFYRA---DGTST  113 (136)
T ss_dssp             TCCSEEEECTT--SHHHHHTTCCSSSEEEEECT---TSCEE
T ss_pred             CCCceEEECCc--hhHHHhcCCCCCCEEEEECC---CCcEE
Confidence            65322222433  68899999999999999999   99887

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=99.77  E-value=3.8e-19  Score=155.86  Aligned_cols=121  Identities=23%  Similarity=0.324  Sum_probs=102.5

Q ss_pred             hhccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChh-HHhhhHHHHHHHHHHHhhhhhcCCCC-CCEEEEEEEcC
Q 014225          201 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIP-CEKFMPKLLSIYQKIKQNLVEKGDAL-EDFEVVFVSTD  277 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~-C~~~~~~l~~l~~~~~~~~~~~~~~~-~~~~iv~is~d  277 (428)
                      +.|.++|+|++ +.+|  .+++++++||++||+||++||++ |+.++|.|.+++++|+++       + .++.|++|++|
T Consensus        11 ~~G~~~p~f~l~~~~g--~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~-------~~~~v~vv~is~d   81 (172)
T 2k6v_A           11 LLNPKPVDFALEGPQG--PVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPK-------AQERVQVIFVSVD   81 (172)
T ss_dssp             EEEEEECCCEEECSSS--EEEGGGSTTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHH-------HHTTEEEEEEESC
T ss_pred             ccCCCCCCeEEEcCCC--CCcHHHhCCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhh-------ccCCEEEEEEEEC
Confidence            45888999999 9988  89999999999999999999997 999999999999988753       1 26999999998


Q ss_pred             C---CHHHHHHHHhcCCccccccCCcch---hHHHHhcCc---------------CccceEEEECCCCcEEecccc
Q 014225          278 R---DQTSFESYFGTMPWLALPFGDPTI---KELTKYFDV---------------QGIPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       278 ~---~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~v---------------~~~P~~~lid~~G~i~~~~~~  332 (428)
                      .   +.+.+++|.++++ .++++..|..   ..+++.|++               .++|+++||| +|+|+.+..+
T Consensus        82 ~~~d~~~~~~~~~~~~~-~~~~~l~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~~g  155 (172)
T 2k6v_A           82 PERDPPEVADRYAKAFH-PSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLYSP  155 (172)
T ss_dssp             TTTCCHHHHHHHHHHHC-TTEEEECCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEEECH
T ss_pred             CCCCCHHHHHHHHHHhC-CCcEEEeCCHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEEECC
Confidence            4   4678888988876 6778777765   577777764               5789999999 9999998543

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=99.77  E-value=3.1e-18  Score=155.62  Aligned_cols=76  Identities=14%  Similarity=0.067  Sum_probs=69.9

Q ss_pred             cccccCc-cccCC-CCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCC-------ChH
Q 014225           39 ASKDRDY-LLNQH-GTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-------DLN  109 (428)
Q Consensus        39 g~~~pdf-l~~~~-G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~-------~~~  109 (428)
                      +..+|+| |.+.+ |+++++++++||+|||+|||+||++|+.++|.|++++++|++.+  ++||+|++|.       +.+
T Consensus        23 ~~~~p~f~l~~~~~G~~v~l~~~~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g--~~vv~v~~d~~~~~e~d~~~  100 (208)
T 2f8a_A           23 MQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRG--LVVLGFPCNQFGHQENAKNE  100 (208)
T ss_dssp             CCCGGGCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCCSTTTTCSCHH
T ss_pred             cCccCceEeeeCCCCCCccHHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCC--eEEEEEECCcccccCCCCHH
Confidence            5679999 99999 99999999999999999999999999999999999999999887  9999999872       457


Q ss_pred             HHHHHHh
Q 014225          110 AFNNYRA  116 (428)
Q Consensus       110 ~~~~~~~  116 (428)
                      ..++|++
T Consensus       101 ~i~~f~~  107 (208)
T 2f8a_A          101 EILNSLK  107 (208)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7888887

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=99.77  E-value=4.6e-18  Score=148.84  Aligned_cols=115  Identities=21%  Similarity=0.322  Sum_probs=97.7

Q ss_pred             cCc-cccCCCCEEecccCCCCEEEEEEecCCChh-hhhhHHHHHHHHHHHhcC--CCcEEEEEEecCC---ChHHHHHHH
Q 014225           43 RDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPP-CGNFTGVLVDVYEELRNN--GSDFEVVFVSSDE---DLNAFNNYR  115 (428)
Q Consensus        43 pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~~~--~~~~~ii~vs~D~---~~~~~~~~~  115 (428)
                      |+| |.+.+|+++++++++||+++|+||++||++ |+.++|.|++++++|++.  ..++++++|++|.   +.+.+++|+
T Consensus         7 p~f~l~~~~G~~~~l~~~~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~   86 (171)
T 2rli_A            7 GDFHLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYV   86 (171)
T ss_dssp             SCCEEEETTSCEEETTTTTTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHH
T ss_pred             CCeEEEeCCCCEEeHHHhCCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHH
Confidence            899 999999999999999999999999999998 999999999999999852  1249999999984   567889999


Q ss_pred             hcCC--CceeccCChHHHHHHHhhcCCCCCc---------------eEEEEcCCCCCCCcccc
Q 014225          116 ACMP--WLAVPYSDLETKKALNRKFDIEGIP---------------CLVVLQPYDDKDDATLH  161 (428)
Q Consensus       116 ~~~~--~~~~~~~d~~~~~~l~~~~~v~~~P---------------~~~lid~~~~dG~i~~~  161 (428)
                      ++++  |..+.. +.+....+++.|++..+|               +++|||+   +|+++..
T Consensus        87 ~~~~~~~~~l~~-~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~---~G~i~~~  145 (171)
T 2rli_A           87 QDFHPRLLGLTG-STKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNP---DGLFTDY  145 (171)
T ss_dssp             HTTCTTCCEEEC-CHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECT---TSCEEEE
T ss_pred             HHcCCCeEEEeC-CHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECC---CCeEEEE
Confidence            8765  433332 334446899999999888               8999999   9999875

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=99.77  E-value=1.1e-18  Score=155.63  Aligned_cols=118  Identities=19%  Similarity=0.270  Sum_probs=100.9

Q ss_pred             cccccccCc-cccCCCC----EEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHH
Q 014225           37 LLASKDRDY-LLNQHGT----QVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA  110 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~----~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~  110 (428)
                      .+|+.+|+| |.+.+|+    ++++++++||+++|+|| ++||++|+.++|.|++++++|++.+  +++++|+.|. .+.
T Consensus         2 ~~G~~~P~f~l~~~~g~~~~~~~~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~--v~vv~vs~d~-~~~   78 (187)
T 1we0_A            2 LIGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLG--VEVYSVSTDT-HFV   78 (187)
T ss_dssp             CTTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTT--EEEEEEESSC-HHH
T ss_pred             CCCCcCCCeEEeccCCCccceEecHHHHCCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcC--CEEEEEECCC-HHH
Confidence            368899999 9999999    99999999999999999 9999999999999999999999876  9999999986 456


Q ss_pred             HHHHHhcC----CCceeccCChHHHHHHHhhcCCC------CCceEEEEcCCCCCCCccccc
Q 014225          111 FNNYRACM----PWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       111 ~~~~~~~~----~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~dG~i~~~~  162 (428)
                      .++|.+++    ++......|.+  ..+++.|++.      ++|+++|||+   +|+++...
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~~~g~~~P~~~lid~---~G~i~~~~  135 (187)
T 1we0_A           79 HKAWHENSPAVGSIEYIMIGDPS--QTISRQFDVLNEETGLADRGTFIIDP---DGVIQAIE  135 (187)
T ss_dssp             HHHHHHSCHHHHTCCSEEEECTT--CHHHHHTTCEETTTTEECEEEEEECT---TSBEEEEE
T ss_pred             HHHHHHHhccccCCCceEEECCc--hHHHHHhCCCcCCCCceeeEEEEECC---CCeEEEEE
Confidence            78888876    43222222433  6889999998      9999999999   99998763

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.77  E-value=1.1e-18  Score=146.19  Aligned_cols=113  Identities=19%  Similarity=0.337  Sum_probs=96.6

Q ss_pred             cccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEe-----cCCChHHHHHH
Q 014225           41 KDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS-----SDEDLNAFNNY  114 (428)
Q Consensus        41 ~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs-----~D~~~~~~~~~  114 (428)
                      ++|+| |.+.+|+++++++++||+++|+||++||++|+.++|.|+++++++++.   +.++.|.     .+.+.+.++++
T Consensus         1 ~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~v~i~~~~~~~~~~~~~~~~~   77 (138)
T 4evm_A            1 EVADFELMGVDGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGDD---YVVLTVVSPGHKGEQSEADFKNW   77 (138)
T ss_dssp             CCCCCEEEBTTSCEEEGGGGTTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTTT---EEEEEEECTTSTTCCCHHHHHHH
T ss_pred             CCCcceeECCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCCC---cEEEEEEcCCCCchhhHHHHHHH
Confidence            47999 999999999999999999999999999999999999999999995443   9999994     45677889999


Q ss_pred             HhcCCCceecc-CChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          115 RACMPWLAVPY-SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       115 ~~~~~~~~~~~-~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      ++++++..++. .+.+  ..+.+.|++.++|+++++|+   +|+++..
T Consensus        78 ~~~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~---~G~i~~~  120 (138)
T 4evm_A           78 YKGLDYKNLPVLVDPS--GKLLETYGVRSYPTQAFIDK---EGKLVKT  120 (138)
T ss_dssp             HTTCCCTTCCEEECTT--CHHHHHTTCCSSSEEEEECT---TCCEEEE
T ss_pred             HhhcCCCCeeEEECcc--hHHHHHcCcccCCeEEEECC---CCcEEEe
Confidence            99887633332 2332  68999999999999999999   9998765

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=99.77  E-value=7.1e-19  Score=156.99  Aligned_cols=118  Identities=23%  Similarity=0.288  Sum_probs=99.1

Q ss_pred             cccccccCc-cccC-CC--CEEecccCCCCEEEEEEec-CCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHH
Q 014225           37 LLASKDRDY-LLNQ-HG--TQVKVSDLEGKVTALYFSA-NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAF  111 (428)
Q Consensus        37 ~~g~~~pdf-l~~~-~G--~~v~l~~~~gk~vlv~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~  111 (428)
                      .+|..+|+| |.+. +|  +++++++++||+++|+||+ +||++|+.++|.|++++++|++.+  +++++|+.|. .+..
T Consensus         2 ~~G~~aP~f~l~~~~~G~~~~v~l~~~~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~--v~vv~Is~d~-~~~~   78 (186)
T 1n8j_A            2 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLG--VDVYSVSTDT-HFTH   78 (186)
T ss_dssp             CTTCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTT--EEEEEEESSC-HHHH
T ss_pred             CCCCcCCCcEeecccCCcceEEEHHHHCCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCC--CEEEEEECCC-HHHH
Confidence            468999999 9998 59  8999999999999999995 999999999999999999999877  9999999985 4567


Q ss_pred             HHHHhcC----CCceeccCChHHHHHHHhhcCCC------CCceEEEEcCCCCCCCccccc
Q 014225          112 NNYRACM----PWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       112 ~~~~~~~----~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~dG~i~~~~  162 (428)
                      ++|.+++    ++.+..+.|.+  ..+++.|++.      .+|+++|||+   +|+++...
T Consensus        79 ~~~~~~~~~~~~~~fp~l~D~~--~~~~~~ygv~~~~~g~~~p~~~lID~---~G~i~~~~  134 (186)
T 1n8j_A           79 KAWHSSSETIAKIKYAMIGDPT--GALTRNFDNMREDEGLADRATFVVDP---QGIIQAIE  134 (186)
T ss_dssp             HHHHHHCTTGGGCCSEEEECTT--SHHHHHTTCEETTTTEECEEEEEECT---TSBEEEEE
T ss_pred             HHHHHHcCcccCCceeEEECCc--hHHHHHhCCccCCCCceeeEEEEECC---CCeEEEEE
Confidence            8888877    43211122433  6789999987      4799999999   99998764

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=99.77  E-value=4.1e-19  Score=156.05  Aligned_cols=117  Identities=14%  Similarity=0.129  Sum_probs=84.3

Q ss_pred             cccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecC-------CChHH
Q 014225           39 ASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-------EDLNA  110 (428)
Q Consensus        39 g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D-------~~~~~  110 (428)
                      +..+|+| |.+.+|+++++++++||+++|+||++||++|+ ++|.|++++++|++.+  +++++|++|       .+.+.
T Consensus         9 ~~~~~~f~l~d~~G~~~~l~~~~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~--v~vv~vs~d~~~~~~~d~~~~   85 (171)
T 3cmi_A            9 MSEFYKLAPVDKKGQPFPFDQLKGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEG--FTIIGFPCNQFGHQEPGSDEE   85 (171)
T ss_dssp             -CGGGGCCCBBTTSCBCCGGGGTTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGT--EEEEEEEECSCC---------
T ss_pred             hhheeeeEEEcCCCCEecHHHcCCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCC--eEEEEEECcccCCCCCCCHHH
Confidence            5678999 99999999999999999999999999999999 9999999999999887  999999986       45567


Q ss_pred             HHHHH-hcCCC--ceeccCChH------HHHH-HHhhcCCCCCc------eEEEEcCCCCCCCcccc
Q 014225          111 FNNYR-ACMPW--LAVPYSDLE------TKKA-LNRKFDIEGIP------CLVVLQPYDDKDDATLH  161 (428)
Q Consensus       111 ~~~~~-~~~~~--~~~~~~d~~------~~~~-l~~~~~v~~~P------~~~lid~~~~dG~i~~~  161 (428)
                      +++|+ ++++.  ..+...+..      .... ..+.|++.++|      +++|||+   +|+++..
T Consensus        86 ~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~---~G~i~~~  149 (171)
T 3cmi_A           86 IAQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDK---KGKVYER  149 (171)
T ss_dssp             ---------CCCSCBBCCCBSSSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECS---SSCEEEE
T ss_pred             HHHHHHhccCCCceEEeeccCCCccchHHHHHHHhccCCcCCCCcccccceEEEECC---CCCEEEE
Confidence            78888 66543  222111111      0011 12468999999      9999999   9999876

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=99.76  E-value=9.2e-19  Score=152.91  Aligned_cols=119  Identities=9%  Similarity=0.100  Sum_probs=92.7

Q ss_pred             ccccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCC-------ChH
Q 014225           38 LASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-------DLN  109 (428)
Q Consensus        38 ~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~-------~~~  109 (428)
                      .|..+|+| |.+.+|+++++++++||+++|+||++||++|+.++|.|++++++|++++  +++++|++|.       +.+
T Consensus         7 ~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~d~~~~~~~~~~~   84 (169)
T 2v1m_A            7 SWNSIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKG--LRILAFPCNQFGGQEPWAEA   84 (169)
T ss_dssp             CCCSGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCCSTTCCCSCHH
T ss_pred             CCcccccceeecCCCCCccHHHcCCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCC--eEEEEEECCccCCCCCCCHH
Confidence            58899999 9999999999999999999999999999999999999999999999877  9999999873       456


Q ss_pred             HHHHH-HhcCC--CceeccCChHH--HHHHH-----hhcC-----CCCCceEEEEcCCCCCCCcccc
Q 014225          110 AFNNY-RACMP--WLAVPYSDLET--KKALN-----RKFD-----IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       110 ~~~~~-~~~~~--~~~~~~~d~~~--~~~l~-----~~~~-----v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      .+++| .++++  |..+...|.+.  ...+.     ..++     +..+|+++|||+   +|+++..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~---~G~i~~~  148 (169)
T 2v1m_A           85 EIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDR---QGQPVKR  148 (169)
T ss_dssp             HHHHHHHHHHCCCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECT---TSCEEEE
T ss_pred             HHHHHHHHhcCCCCceEEEEeecCccccHHHHHHHhhcCCccCCcccccceEEEECC---CCCEEEE
Confidence            78888 46554  32221012110  01111     1124     556799999999   9999876

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=99.76  E-value=1.4e-18  Score=151.92  Aligned_cols=120  Identities=13%  Similarity=0.195  Sum_probs=93.5

Q ss_pred             cccccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecC-------CCh
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-------EDL  108 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D-------~~~  108 (428)
                      ..|..+|+| |.+.+|+++++++++||+++|+||++||++|+.++|.|+++++++++++  +++++|++|       .+.
T Consensus         7 ~~g~~~p~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~vs~d~~~~~~~~~~   84 (170)
T 2p5q_A            7 KNPESVHDFTVKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQG--LEILAFPCNQFGEEEPGTN   84 (170)
T ss_dssp             ---CCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCTTTTCCCSCH
T ss_pred             CCCccccceEEEcCCCCEecHHHhCCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCC--EEEEEEECCCCCCCCCCCH
Confidence            368899999 9999999999999999999999999999999999999999999999886  999999997       366


Q ss_pred             HHHHHHHh-cCCC--ceeccCChHH--HHHHH-----hhcCC--CCCc---eEEEEcCCCCCCCcccc
Q 014225          109 NAFNNYRA-CMPW--LAVPYSDLET--KKALN-----RKFDI--EGIP---CLVVLQPYDDKDDATLH  161 (428)
Q Consensus       109 ~~~~~~~~-~~~~--~~~~~~d~~~--~~~l~-----~~~~v--~~~P---~~~lid~~~~dG~i~~~  161 (428)
                      +.+++|++ +++.  ..+...|.+.  ...+.     +.+++  .++|   +++|||+   +|+++..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~---~G~i~~~  149 (170)
T 2p5q_A           85 DQITDFVCTRFKSEFPIFDKIDVNGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNK---DGQVVDR  149 (170)
T ss_dssp             HHHHHHHHHHTCCCSCBBCCCBSSSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECT---TSCEEEE
T ss_pred             HHHHHHHHHhcCCCceeEeeeccCCCchHHHHHHHHhcCCCccCCcccccccEEEECC---CCCEEEe
Confidence            78888888 5543  2221012210  01122     23466  7788   9999999   9999876

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=99.76  E-value=1.1e-18  Score=159.98  Aligned_cols=117  Identities=15%  Similarity=0.238  Sum_probs=99.6

Q ss_pred             cccccccCc-cccC--CC--CEEecccC-CCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChH
Q 014225           37 LLASKDRDY-LLNQ--HG--TQVKVSDL-EGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLN  109 (428)
Q Consensus        37 ~~g~~~pdf-l~~~--~G--~~v~l~~~-~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~  109 (428)
                      .+|..+|+| |.+.  +|  ++++++++ +||++||+|| ++||++|+.++|.|++++++|++.+  ++||+|+.|. .+
T Consensus        26 ~~G~~aP~F~l~~~~~~G~~~~v~L~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~--v~vv~Is~D~-~~  102 (221)
T 2c0d_A           26 LVTKKAYNFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKN--VELLGISVDS-VY  102 (221)
T ss_dssp             CTTSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTT--EEEEEEESSC-HH
T ss_pred             CCCCCCCCeEEeccccCCCccEEeHHHHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEeCCC-HH
Confidence            468999999 9998  99  99999999 9999999999 9999999999999999999999877  9999999975 45


Q ss_pred             HHHHHHhcC-------CCceec-cCChHHHHHHHhhcCC-----CCCceEEEEcCCCCCCCccccc
Q 014225          110 AFNNYRACM-------PWLAVP-YSDLETKKALNRKFDI-----EGIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       110 ~~~~~~~~~-------~~~~~~-~~d~~~~~~l~~~~~v-----~~~P~~~lid~~~~dG~i~~~~  162 (428)
                      ..++|.+++       ++ .+| +.|.+  ..+++.|++     ..+|+++|||+   +|+|+...
T Consensus       103 ~~~~~~~~~~~~~g~~~~-~fp~l~D~~--~~~~~~ygv~~~~g~~~P~~~lID~---~G~I~~~~  162 (221)
T 2c0d_A          103 SHLAWKNMPIEKGGIGNV-EFTLVSDIN--KDISKNYNVLYDNSFALRGLFIIDK---NGCVRHQT  162 (221)
T ss_dssp             HHHHHHHSCGGGTCCCSC-SSEEEECTT--SHHHHHTTCEETTTEECEEEEEECT---TSBEEEEE
T ss_pred             HHHHHHHHhhhhcCccCC-ceEEEECCc--hHHHHHcCCcccCCCccceEEEECC---CCeEEEEE
Confidence            577888766       32 222 22433  689999999     47999999999   99998774

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.76  E-value=2.9e-18  Score=147.45  Aligned_cols=116  Identities=19%  Similarity=0.284  Sum_probs=101.0

Q ss_pred             cccccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEec--CCChHHHHH
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS--DEDLNAFNN  113 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~--D~~~~~~~~  113 (428)
                      .+|..+|+| +.+.+|+++++++++ |+++|+||++||++|+.++|.|+++++++   +  +.+++|++  +.+.+.+++
T Consensus         6 ~~g~~~p~f~l~~~~g~~~~l~~~~-k~vll~f~~~~C~~C~~~~~~l~~l~~~~---~--v~~v~v~~d~~~~~~~~~~   79 (154)
T 3ia1_A            6 KPGEPLPDFLLLDPKGQPVTPATVS-KPAVIVFWASWCTVCKAEFPGLHRVAEET---G--VPFYVISREPRDTREVVLE   79 (154)
T ss_dssp             CSBEECCCCCEECTTSCEECTTTSC-SSEEEEEECTTCHHHHHHHHHHHHHHHHH---C--CCEEEEECCTTCCHHHHHH
T ss_pred             CCCCcCCceEEECCCCCEechHHcC-CeEEEEEEcccChhHHHHHHHHHHHHHHc---C--CeEEEEeCCCcccHHHHHH
Confidence            368899999 999999999999999 99999999999999999999999999999   3  88999999  677889999


Q ss_pred             HHhcCCCceeccCC-hHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          114 YRACMPWLAVPYSD-LETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       114 ~~~~~~~~~~~~~d-~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +++++++....+.+ .+....+.+.|++.++|++++||+   +|+++..
T Consensus        80 ~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~  125 (154)
T 3ia1_A           80 YMKTYPRFIPLLASDRDRPHEVAARFKVLGQPWTFVVDR---EGKVVAL  125 (154)
T ss_dssp             HHTTCTTEEECBCCSSCCHHHHHTTSSBCSSCEEEEECT---TSEEEEE
T ss_pred             HHHHcCCCcccccccccchHHHHHHhCCCcccEEEEECC---CCCEEEE
Confidence            99998864333333 123389999999999999999999   9988765

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.76  E-value=6.8e-19  Score=157.88  Aligned_cols=118  Identities=14%  Similarity=0.237  Sum_probs=101.9

Q ss_pred             cccccccCc-cc-cCCCCEEecccCCCC-EEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecC-------C
Q 014225           37 LLASKDRDY-LL-NQHGTQVKVSDLEGK-VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-------E  106 (428)
Q Consensus        37 ~~g~~~pdf-l~-~~~G~~v~l~~~~gk-~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D-------~  106 (428)
                      .+|..+|+| |. +.+|+++++++++|| +++|+||++||++|+.++|.|++++++|++++  +.+++|++|       .
T Consensus        19 ~~g~~~p~f~l~~~~~G~~~~l~~~~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~v~~d~~~~~~~d   96 (196)
T 2ywi_A           19 PLGKQAPPFALTNVIDGNVVRLEDVKSDAATVIMFICNHCPFVKHVQHELVRLANDYMPKG--VSFVAINSNDAEQYPED   96 (196)
T ss_dssp             CTTCBCCCCEEEETTTCCEEEHHHHCCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGT--CEEEEEECSCTTTCGGG
T ss_pred             CcCCcCCceeeeecCCCCEEeHHHhCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCC--cEEEEEECCcccccccc
Confidence            468899999 99 999999999999998 59999999999999999999999999999876  999999997       5


Q ss_pred             ChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          107 DLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.+.+++|++++++....+.+.+  ..+.+.|++.++|+++|||+   +|+++..
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~---~G~i~~~  146 (196)
T 2ywi_A           97 SPENMKKVAEELGYPFPYLYDET--QEVAKAYDAACTPDFYIFDR---DLKCVYR  146 (196)
T ss_dssp             SHHHHHHHHHHHTCCSCEEECSS--CHHHHHHTCCEESEEEEEET---TCBEEEE
T ss_pred             CHHHHHHHHHHcCCCceEEECCc--hHHHHHhCCCCCCeEEEEcC---CCeEEEc
Confidence            67888999987664221122332  67899999999999999999   9999876

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=99.76  E-value=1.8e-18  Score=159.02  Aligned_cols=140  Identities=11%  Similarity=0.153  Sum_probs=109.6

Q ss_pred             hhccCCCCccc-CCCCCceecccccCCc--EEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC
Q 014225          201 LLTNHDRGYLL-GHPPDEKVPVSSLVGK--TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD  277 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g~~~v~l~~~~gk--~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d  277 (428)
                      .+|.++|+|++ +.+|  .+++++++||  +||++||++|||+|..+++.|.+++++|+++         +++||+||+|
T Consensus         6 ~~G~~aP~F~l~~~~G--~v~l~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~---------~v~vi~IS~D   74 (224)
T 1prx_A            6 LLGDVAPNFEANTTVG--RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKR---------NVKLIALSID   74 (224)
T ss_dssp             CTTCBCCCCEEEETTE--EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTT---------TEEEEEEESS
T ss_pred             CCcCCCCCcEEecCCC--CEEHHHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHC---------CCEEEEEcCC
Confidence            36999999999 8887  6999999997  4666668999999999999999999999876         8999999999


Q ss_pred             CCHHHHHHHHhc---C------CccccccCCcchhHHHHhcCcC------------ccceEEEECCCCcEEeccccchhh
Q 014225          278 RDQTSFESYFGT---M------PWLALPFGDPTIKELTKYFDVQ------------GIPCLVIIGPEGKTVTKQGRNLIN  336 (428)
Q Consensus       278 ~~~~~~~~~~~~---~------~~~~~~~~~d~~~~~~~~~~v~------------~~P~~~lid~~G~i~~~~~~~~~~  336 (428)
                      . .+..++|.+.   .      ..++||+..|....+++.||+.            .+|++||||++|+|+....+.+  
T Consensus        75 ~-~~~~~~~~~~i~~~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~--  151 (224)
T 1prx_A           75 S-VEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPA--  151 (224)
T ss_dssp             C-HHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCT--
T ss_pred             C-HHHHHHHHHHHHHhhCcccccCcCcceeecCchHHHHHhCCCCcccccCCCccccceEEEEECCCCEEEEEEecCC--
Confidence            4 4445555543   0      3478899889889999999984            4799999999999999853321  


Q ss_pred             cccccCCCCChHHHHHHHHHHHHHHh
Q 014225          337 LYQENAYPFTEAKLEFLEKQMEEEAK  362 (428)
Q Consensus       337 ~~g~~~~p~~~~~~~~L~~~l~~~~~  362 (428)
                           .   .....++|.+.|+.+..
T Consensus       152 -----~---~gr~~~eil~~i~~l~~  169 (224)
T 1prx_A          152 -----T---TGRNFDEILRVVISLQL  169 (224)
T ss_dssp             -----T---BCCCHHHHHHHHHHHHH
T ss_pred             -----C---CCCCHHHHHHHHHHHHh
Confidence                 0   11234666666766543

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=99.76  E-value=3.2e-18  Score=154.72  Aligned_cols=122  Identities=19%  Similarity=0.241  Sum_probs=104.7

Q ss_pred             HhhhhccCCCCccc----CCCCCceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEE
Q 014225          198 LINLLTNHDRGYLL----GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVV  272 (428)
Q Consensus       198 ~~~~~g~~~p~f~l----~~~g~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv  272 (428)
                      +...+|+++|+|++    |.+++ +++|++++||+|||+|| +.|||.|..+++.|++.+++|++.         +++|+
T Consensus        21 M~~~VG~~APdF~l~a~~d~~~~-~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~---------g~~vi   90 (216)
T 3sbc_A           21 MVAQVQKQAPTFKKTAVVDGVFD-EVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQ---------GAQVL   90 (216)
T ss_dssp             -CCCTTSBCCCCCEEEEETTEEE-EECGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHT---------TEEEE
T ss_pred             chhhcCCcCCCCCCcceECCCCc-EEehHHhCCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccC---------CceEE
Confidence            34468999999986    55667 99999999999999999 899999999999999999999987         89999


Q ss_pred             EEEcCCCHHHHHHHHhcC------CccccccCCcchhHHHHhcCcC------ccceEEEECCCCcEEecc
Q 014225          273 FVSTDRDQTSFESYFGTM------PWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       273 ~is~d~~~~~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~  330 (428)
                      +||+| +.....+|....      ..++||++.|.+.++++.||+-      ..+.+||||++|+|++..
T Consensus        91 giS~D-s~~sh~aw~~~~~~~~~~~~l~fpllsD~~~~vak~YGv~~~~~g~~~R~tFiID~~G~Ir~~~  159 (216)
T 3sbc_A           91 FASTD-SEYSLLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHIT  159 (216)
T ss_dssp             EEESS-CHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred             EeecC-chhhHHHHHHHHHHhCCccCcccceEeCCCCHHHHHcCCeeccCCceeeEEEEECCCCeEEEEE
Confidence            99999 555666666543      2478999999999999999983      468999999999998864

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=99.76  E-value=2.2e-18  Score=153.20  Aligned_cols=120  Identities=12%  Similarity=0.057  Sum_probs=95.5

Q ss_pred             cccccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecC-------CCh
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-------EDL  108 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D-------~~~  108 (428)
                      .+|..+|+| |.+.+|+++++++++||+++|+||++||++|+.++|.|++++++|++++  +++++|++|       .+.
T Consensus        22 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~--v~vv~vs~d~~~~~e~~~~   99 (183)
T 2obi_A           22 RCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECG--LRILAFPCNQFGKQEPGSN   99 (183)
T ss_dssp             GGCCSGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCCSTTCCCSCH
T ss_pred             cccCcccceEEEcCCCCEeeHHHcCCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCC--eEEEEEECCCCCCCCCCCH
Confidence            468999999 9999999999999999999999999999999999999999999999877  999999987       366


Q ss_pred             HHHHHHHhcCCCceeccC--ChHH--HHHHHhhc-------C-----CCCCceEEEEcCCCCCCCcccc
Q 014225          109 NAFNNYRACMPWLAVPYS--DLET--KKALNRKF-------D-----IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~--d~~~--~~~l~~~~-------~-----v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.+++|++++++....+.  |.+.  ...+.+.+       +     +..+|+++|||+   +|+++..
T Consensus       100 ~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~---~G~i~~~  165 (183)
T 2obi_A          100 EEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDK---NGCVVKR  165 (183)
T ss_dssp             HHHHHHHHTTTCCSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECT---TSCEEEE
T ss_pred             HHHHHHHHHcCCCceEEeeeccCCcchhHHHHHhhccCCCCCcccccccccceEEEECC---CCCEEEE
Confidence            788999988764221111  2110  01122211       3     455799999999   9999876

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=99.76  E-value=1.2e-18  Score=152.88  Aligned_cols=116  Identities=14%  Similarity=0.165  Sum_probs=98.6

Q ss_pred             ccccccCc-cc-cCCCCEEecccC-CCCEEEEEEe-cCCChhhhh-hHHHHHHHHHHHhcCCCcE-EEEEEecCCChHHH
Q 014225           38 LASKDRDY-LL-NQHGTQVKVSDL-EGKVTALYFS-ANWYPPCGN-FTGVLVDVYEELRNNGSDF-EVVFVSSDEDLNAF  111 (428)
Q Consensus        38 ~g~~~pdf-l~-~~~G~~v~l~~~-~gk~vlv~F~-a~wC~~C~~-~~p~l~~l~~~~~~~~~~~-~ii~vs~D~~~~~~  111 (428)
                      +|+.+|+| |. +.+|++++|+++ +||+++|+|| ++||++|+. ++|.|++++++|++.|  + +|++||.|. .+..
T Consensus         5 ~G~~aP~f~l~~~~~G~~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~g--v~~vv~Is~d~-~~~~   81 (167)
T 2wfc_A            5 EGDKLPAVTVFGATPNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKG--VDIIACMAVND-SFVM   81 (167)
T ss_dssp             TTCBCCCCEEESSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTT--CCEEEEEESSC-HHHH
T ss_pred             CCCcCCCcEeecCCCCcEEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEEeCCC-HHHH
Confidence            68999999 99 999999999998 9998888886 999999999 9999999999999887  9 999999974 5678


Q ss_pred             HHHHhcCCCc-eec-cCChHHHHHHHhhcCCCCC-----------ceEEEEcCCCCCCCccccc
Q 014225          112 NNYRACMPWL-AVP-YSDLETKKALNRKFDIEGI-----------PCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       112 ~~~~~~~~~~-~~~-~~d~~~~~~l~~~~~v~~~-----------P~~~lid~~~~dG~i~~~~  162 (428)
                      ++|.+++++. .+| ..|.+  ..+.+.||+...           |+++|| +   +|+|++..
T Consensus        82 ~~~~~~~~~~~~fp~l~D~~--~~~~~~~gv~~~~~~~~g~~~~~p~t~lI-~---~G~I~~~~  139 (167)
T 2wfc_A           82 DAWGKAHGADDKVQMLADPG--GAFTKAVDMELDLSAVLGNVRSKRYSLVI-E---DGVVTKVN  139 (167)
T ss_dssp             HHHHHHTTCTTTSEEEECTT--SHHHHHTTCEECCHHHHSSCEECCEEEEE-E---TTEEEEEE
T ss_pred             HHHHHhcCCCcceEEEECCC--CcHHHHcCCccccccccCcccceEEEEEE-e---CCEEEEEE
Confidence            8898887653 123 23543  789999998653           999999 8   99998763

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=99.76  E-value=1.5e-18  Score=154.54  Aligned_cols=120  Identities=12%  Similarity=0.054  Sum_probs=94.0

Q ss_pred             cccccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCC-------Ch
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-------DL  108 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~-------~~  108 (428)
                      .+|..+|+| |.+.+|+++++++++||+++|+||++||++|+.++|.|++++++|++++  +++++|++|.       +.
T Consensus        24 ~~g~~~p~f~l~~~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~--v~vv~is~d~~~~~~~~~~  101 (185)
T 2gs3_A           24 RCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECG--LRILAFPCNQFGKQEPGSN  101 (185)
T ss_dssp             GGCCCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCTTTTCCCSCH
T ss_pred             cCCCCcCCceeEcCCCCEeeHHHcCCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCC--eEEEEEECcccCCCCCCCH
Confidence            368899999 9999999999999999999999999999999999999999999999887  9999999873       45


Q ss_pred             HHHHHHHhcCCCceeccC--ChHH--HHHHHhhc-------C-----CCCCceEEEEcCCCCCCCcccc
Q 014225          109 NAFNNYRACMPWLAVPYS--DLET--KKALNRKF-------D-----IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~--d~~~--~~~l~~~~-------~-----v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.+++++++++.....+.  |.+.  ...+.+.+       +     +..+|+++|||+   +|+++..
T Consensus       102 ~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~---~G~i~~~  167 (185)
T 2gs3_A          102 EEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDK---NGCVVKR  167 (185)
T ss_dssp             HHHHHHHHHTTCCSEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECT---TSCEEEE
T ss_pred             HHHHHHHHHcCCCCeeeeeeccCChhhhHHHHHHHhhcccccccCCcccccceEEEECC---CCCEEEe
Confidence            778889887764211111  1110  01122111       3     344799999999   9999876

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.76  E-value=1.1e-18  Score=148.41  Aligned_cols=116  Identities=16%  Similarity=0.132  Sum_probs=99.9

Q ss_pred             ccccccCc-c--ccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCC-----ChH
Q 014225           38 LASKDRDY-L--LNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-----DLN  109 (428)
Q Consensus        38 ~g~~~pdf-l--~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~-----~~~  109 (428)
                      +|..+|+| +  .+.+|+++++++++||+++|+||++||++|+.++|.|++++++++++   +.+++|++|.     +.+
T Consensus         3 ~g~~~P~f~~~~~~~~g~~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~v~~~~~~~~~~~~   79 (148)
T 2b5x_A            3 LRQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ---LNVVAVHMPRSEDDLDPG   79 (148)
T ss_dssp             TTCBCCCCCCCSEEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEECCCSTTTSSHH
T ss_pred             CCCCCCCCccccccccCcccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCC---cEEEEEEcCCCccccCHH
Confidence            58899999 7  68999999999999999999999999999999999999999999775   8999999876     678


Q ss_pred             HHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          110 AFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       110 ~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      .++++++++++......+..  ..+++.|++.++|+++++|+   +|+++..
T Consensus        80 ~~~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~---~G~i~~~  126 (148)
T 2b5x_A           80 KIKETAAEHDITQPIFVDSD--HALTDAFENEYVPAYYVFDK---TGQLRHF  126 (148)
T ss_dssp             HHHHHHHHTTCCSCEEECSS--CHHHHHTCCCCSSEEEEECT---TCBEEEE
T ss_pred             HHHHHHHHcCCCcceEECCc--hhHHHHhCCCCCCEEEEECC---CCcEEEE
Confidence            89999998775221112332  68999999999999999999   9988764

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=99.75  E-value=1.8e-18  Score=155.04  Aligned_cols=116  Identities=16%  Similarity=0.224  Sum_probs=99.6

Q ss_pred             ccccccCc-cccC--CC--CEEecccC-CCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHH
Q 014225           38 LASKDRDY-LLNQ--HG--TQVKVSDL-EGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA  110 (428)
Q Consensus        38 ~g~~~pdf-l~~~--~G--~~v~l~~~-~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~  110 (428)
                      +|+.+|+| |.+.  +|  ++++++++ +||+++|+|| ++||++|+.++|.|++++++|++.+  +++++|+.|. .+.
T Consensus         2 ~G~~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~--v~vv~Is~d~-~~~   78 (192)
T 2h01_A            2 FQGQAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERN--VELLGCSVDS-KFT   78 (192)
T ss_dssp             CSSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTT--EEEEEEESSC-HHH
T ss_pred             CCCcCCCcEeEeeecCCceeEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEEeCC-HHH
Confidence            58899999 9998  99  89999999 9999999999 9999999999999999999999876  9999999984 556


Q ss_pred             HHHHHhcC-------CCceec-cCChHHHHHHHhhcCCC-----CCceEEEEcCCCCCCCccccc
Q 014225          111 FNNYRACM-------PWLAVP-YSDLETKKALNRKFDIE-----GIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       111 ~~~~~~~~-------~~~~~~-~~d~~~~~~l~~~~~v~-----~~P~~~lid~~~~dG~i~~~~  162 (428)
                      .++|.+.+       ++ .++ +.|.+  ..+++.|++.     .+|+++|||+   +|+++...
T Consensus        79 ~~~~~~~~~~~~~~~~~-~~~~l~D~~--~~~~~~~gv~~~~g~~~P~~~liD~---~G~i~~~~  137 (192)
T 2h01_A           79 HLAWKKTPLSQGGIGNI-KHTLISDIS--KSIARSYDVLFNESVALRAFVLIDK---QGVVQHLL  137 (192)
T ss_dssp             HHHHHTSCGGGTCCCSC-SSEEEECTT--SHHHHHTTCEETTTEECCEEEEECT---TSBEEEEE
T ss_pred             HHHHHHhHHhhCCccCC-CcCeEECCc--HHHHHHhCCcCcCCceeeEEEEEcC---CCEEEEEE
Confidence            78888766       32 222 22333  6899999999     8999999999   99998764

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=99.75  E-value=1.7e-18  Score=151.31  Aligned_cols=118  Identities=14%  Similarity=0.130  Sum_probs=98.3

Q ss_pred             cccccccCc-cccCCCCEEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHH
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNY  114 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~  114 (428)
                      .+|..+|+| |.+.+|+++++++++||+++|+|| ++||++|+.++|.|++++++|  .+  +++++|+.|. .+..++|
T Consensus        18 ~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~~--v~vv~Is~d~-~~~~~~~   92 (165)
T 1q98_A           18 QVGEIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL--SN--TIVLCISADL-PFAQARF   92 (165)
T ss_dssp             CTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS--TT--EEEEEEESSC-HHHHTTC
T ss_pred             CCCCCCCCeEEECCCCCEEehHHhCCCeEEEEEECCCCCCccHHHHHHHHHHHHHc--CC--CEEEEEeCCC-HHHHHHH
Confidence            368999999 999999999999999999999999 899999999999999999999  44  9999999975 5567888


Q ss_pred             HhcCCCceec-cCChHHHHHHHhhcCCCC---------CceEEEEcCCCCCCCcccccc
Q 014225          115 RACMPWLAVP-YSDLETKKALNRKFDIEG---------IPCLVVLQPYDDKDDATLHDG  163 (428)
Q Consensus       115 ~~~~~~~~~~-~~d~~~~~~l~~~~~v~~---------~P~~~lid~~~~dG~i~~~~~  163 (428)
                      .+++++..++ +.|.. ...+.+.|++..         +|+++|||+   +|+|+....
T Consensus        93 ~~~~~~~~~~~l~D~~-~~~~~~~~gv~~~~~~~~g~~~p~~~liD~---~G~i~~~~~  147 (165)
T 1q98_A           93 CGAEGIENAKTVSTFR-NHALHSQLGVDIQTGPLAGLTSRAVIVLDE---QNNVLHSQL  147 (165)
T ss_dssp             TTTTTCTTEEEEECTT-CTHHHHHTTCEECSSTTTTSBCCEEEEECT---TSBEEEEEE
T ss_pred             HHHcCCCceEEeeccc-cchHHHHhCceecccccCCccceeEEEEcC---CCEEEEEEe
Confidence            8877652122 33431 268899999853         599999999   999987743

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=99.75  E-value=1.8e-18  Score=155.80  Aligned_cols=117  Identities=13%  Similarity=0.169  Sum_probs=99.7

Q ss_pred             ccccccCc-cccC--CCC---EEecccC-CCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChH
Q 014225           38 LASKDRDY-LLNQ--HGT---QVKVSDL-EGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLN  109 (428)
Q Consensus        38 ~g~~~pdf-l~~~--~G~---~v~l~~~-~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~  109 (428)
                      +|..+|+| |.+.  +|+   +++++++ +||+++|+|| ++||++|+.++|.|++++++|++.+  +++++|+.|. .+
T Consensus         3 ~G~~~P~f~l~~~~~~G~~~~~v~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~Is~d~-~~   79 (198)
T 1zof_A            3 VTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKG--FNVIGVSIDS-EQ   79 (198)
T ss_dssp             TTSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTT--EEEEEEESSC-HH
T ss_pred             CCCcCCceEeecccCCCcccceEEHHHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcC--CEEEEEECCC-HH
Confidence            68999999 9998  898   9999999 9999999999 9999999999999999999999876  9999999985 56


Q ss_pred             HHHHHHhc-------CCCceeccCChHHHHHHHhhcCCC-----CCceEEEEcCCCCCCCccccc
Q 014225          110 AFNNYRAC-------MPWLAVPYSDLETKKALNRKFDIE-----GIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       110 ~~~~~~~~-------~~~~~~~~~d~~~~~~l~~~~~v~-----~~P~~~lid~~~~dG~i~~~~  162 (428)
                      ..++|.++       +++....+.|.+  ..+.+.|++.     ++|+++|||+   +|+++...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~~g~~~P~~~lid~---~G~i~~~~  139 (198)
T 1zof_A           80 VHFAWKNTPVEKGGIGQVSFPMVADIT--KSISRDYDVLFEEAIALRGAFLIDK---NMKVRHAV  139 (198)
T ss_dssp             HHHHHHTSCGGGTCCCCCSSCEEECTT--SHHHHHTTCEETTTEECEEEEEEET---TTEEEEEE
T ss_pred             HHHHHHHhhhhcccccCceeEEEECCc--hHHHHHhCCcccCCcccceEEEECC---CCEEEEEE
Confidence            67888876       343211122333  6889999999     9999999999   99998763

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.75  E-value=2e-18  Score=155.21  Aligned_cols=117  Identities=15%  Similarity=0.224  Sum_probs=99.6

Q ss_pred             ccccccCc-cccCC-------------C--CEEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEE
Q 014225           38 LASKDRDY-LLNQH-------------G--TQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVV  100 (428)
Q Consensus        38 ~g~~~pdf-l~~~~-------------G--~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii  100 (428)
                      +|..+|+| |.+.+             |  +++++++++||+++|+|| ++||++|+.++|.|++++++|++.+  ++++
T Consensus         6 ~G~~~P~f~l~~~~~~~~~~~~~~~~~G~~~~v~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vv   83 (195)
T 2bmx_A            6 IGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRD--AQIL   83 (195)
T ss_dssp             TTCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTT--EEEE
T ss_pred             CCCcCCCcCcccccccccccccccccCCCccEeeHHHhCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCC--CEEE
Confidence            68999999 98887             7  899999999999999999 9999999999999999999999876  9999


Q ss_pred             EEecCCChHHHHHHHhcC----CCceeccCChHHHHHHHhhcCCC-----CCceEEEEcCCCCCCCccccc
Q 014225          101 FVSSDEDLNAFNNYRACM----PWLAVPYSDLETKKALNRKFDIE-----GIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       101 ~vs~D~~~~~~~~~~~~~----~~~~~~~~d~~~~~~l~~~~~v~-----~~P~~~lid~~~~dG~i~~~~  162 (428)
                      +|++|. .+..++|.+++    ++....+.|.+  ..+.+.|++.     ++|+++|||+   +|+++...
T Consensus        84 ~Vs~d~-~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~~g~~~P~~~lid~---~G~i~~~~  148 (195)
T 2bmx_A           84 GVSIDS-EFAHFQWRAQHNDLKTLPFPMLSDIK--RELSQAAGVLNADGVADRVTFIVDP---NNEIQFVS  148 (195)
T ss_dssp             EEESSC-HHHHHHHHHHCTTGGGCCSCEEECTT--SHHHHHHTCBCTTSSBCEEEEEECT---TSBEEEEE
T ss_pred             EEECCC-HHHHHHHHHHhccccCCceeEEeCCc--hHHHHHhCCcccCCCccceEEEEcC---CCeEEEEE
Confidence            999986 55678888776    33211122333  6889999999     9999999999   99998763

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=99.75  E-value=2.1e-18  Score=157.99  Aligned_cols=139  Identities=11%  Similarity=0.135  Sum_probs=107.9

Q ss_pred             hhccCCCCccc-CC--CCCceecccccCCc-E-EEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEE
Q 014225          201 LLTNHDRGYLL-GH--PPDEKVPVSSLVGK-T-VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS  275 (428)
Q Consensus       201 ~~g~~~p~f~l-~~--~g~~~v~l~~~~gk-~-vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is  275 (428)
                      .+|.++|+|++ +.  +|  .+++++++|| + ||++||++|||+|..+++.|.+++++|+++         +++||+||
T Consensus         4 ~iG~~aP~F~l~~~~~~G--~v~l~d~~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~---------~v~vi~vS   72 (220)
T 1xcc_A            4 HLGATFPNFTAKASGIDG--DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKL---------NCKLIGFS   72 (220)
T ss_dssp             CTTCBCCCCEECBTTCSS--CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTT---------TEEEEEEE
T ss_pred             CCCCCCCCcEeecccCCC--cEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHc---------CCEEEEEe
Confidence            36999999999 77  66  6999999998 4 555568999999999999999999999876         89999999


Q ss_pred             cCCCHHHHHHHHh------cCCccccccCCcchhHHHHhcCcC------------ccceEEEECCCCcEEeccccchhhc
Q 014225          276 TDRDQTSFESYFG------TMPWLALPFGDPTIKELTKYFDVQ------------GIPCLVIIGPEGKTVTKQGRNLINL  337 (428)
Q Consensus       276 ~d~~~~~~~~~~~------~~~~~~~~~~~d~~~~~~~~~~v~------------~~P~~~lid~~G~i~~~~~~~~~~~  337 (428)
                      +|. ....++|.+      ....++||+..|.+..+++.||+.            .+|++||||++|+|+....+.+   
T Consensus        73 ~D~-~~~~~~~~~~i~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~flID~~G~I~~~~~~~~---  148 (220)
T 1xcc_A           73 CNS-KESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPA---  148 (220)
T ss_dssp             SSC-HHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECT---
T ss_pred             CCC-HHHHHHHHHHHHHHhcCCCCcceeEECchhHHHHHhCCCCcccccCCCCCcccceEEEECCCCEEEEEEecCC---
Confidence            994 444455544      123478999989889999999983            4799999999999999853321   


Q ss_pred             ccccCCCCChHHHHHHHHHHHHHH
Q 014225          338 YQENAYPFTEAKLEFLEKQMEEEA  361 (428)
Q Consensus       338 ~g~~~~p~~~~~~~~L~~~l~~~~  361 (428)
                          .   .....++|.+.|+++.
T Consensus       149 ----~---~g~~~~ell~~i~~lq  165 (220)
T 1xcc_A          149 ----T---TGRNAHEILRVLKSLQ  165 (220)
T ss_dssp             ----T---BCCCHHHHHHHHHHHH
T ss_pred             ----C---CCCCHHHHHHHHHHHH
Confidence                0   1123466666666654

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=99.75  E-value=2e-18  Score=150.50  Aligned_cols=116  Identities=18%  Similarity=0.206  Sum_probs=96.9

Q ss_pred             cccccccCc-cccCCCCEEecccCCCCEEEEEEec-CCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHH
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSA-NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNY  114 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~  114 (428)
                      .+|..+|+| |.+.+|+++++++++||+++|+||+ +||++|+.++|.|++++++|  .+  +++++|+.|. .+..++|
T Consensus        17 ~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~--~~--v~vv~is~d~-~~~~~~~   91 (163)
T 1psq_A           17 QVGDKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL--DN--TVVLTVSMDL-PFAQKRW   91 (163)
T ss_dssp             CTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TT--EEEEEEESSC-HHHHHHH
T ss_pred             CCCCCCCCEEEEcCCCcEeeHHHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc--CC--cEEEEEECCC-HHHHHHH
Confidence            468999999 9999999999999999999999995 99999999999999999999  44  9999999985 5567888


Q ss_pred             HhcCCC-ceeccCC-hHHHHHHHhhcCCC----C--CceEEEEcCCCCCCCccccc
Q 014225          115 RACMPW-LAVPYSD-LETKKALNRKFDIE----G--IPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       115 ~~~~~~-~~~~~~d-~~~~~~l~~~~~v~----~--~P~~~lid~~~~dG~i~~~~  162 (428)
                      .+++++ ......| .+  ..+.+.|++.    +  .|+++|||+   +|+++...
T Consensus        92 ~~~~~~~~~~~l~D~~~--~~~~~~~gv~~~~~g~~~p~~~liD~---~G~i~~~~  142 (163)
T 1psq_A           92 CGAEGLDNAIMLSDYFD--HSFGRDYALLINEWHLLARAVFVLDT---DNTIRYVE  142 (163)
T ss_dssp             HHHHTCTTSEEEECTTT--CHHHHHHTCBCTTTCSBCCEEEEECT---TCBEEEEE
T ss_pred             HHhcCCCCcEEecCCch--hHHHHHhCCccccCCceEEEEEEEcC---CCeEEEEE
Confidence            887654 2222224 33  6889999987    3  499999999   99998764

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=99.75  E-value=6.1e-18  Score=152.68  Aligned_cols=122  Identities=16%  Similarity=0.291  Sum_probs=98.0

Q ss_pred             ccccccc--cCc-cccCCCCEEecccCCCCEEEEEEecCCChh-hhhhHHHHHHHHHHHhcC-CCcEEEEEEecCC---C
Q 014225           36 SLLASKD--RDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPP-CGNFTGVLVDVYEELRNN-GSDFEVVFVSSDE---D  107 (428)
Q Consensus        36 ~~~g~~~--pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~~~-~~~~~ii~vs~D~---~  107 (428)
                      ..+|..+  |+| |.+.+|+++++++++||++||+||++||++ |+.++|.|+++++++++. +.++++++|++|.   +
T Consensus        13 ~~~g~~~~~p~f~l~d~~G~~v~l~~~~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~   92 (200)
T 2b7k_A           13 RGYGKPSLGGPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDS   92 (200)
T ss_dssp             ---CCCCCCCCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCC
T ss_pred             hccCCCCcCCCEEEEcCCCCEEeHHHcCCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCC
Confidence            3457665  999 999999999999999999999999999998 999999999999999864 2349999999995   6


Q ss_pred             hHHHHHHHhcCC--CceeccCChHHHHHHHhhcCCC-CCc---------------eEEEEcCCCCCCCcccc
Q 014225          108 LNAFNNYRACMP--WLAVPYSDLETKKALNRKFDIE-GIP---------------CLVVLQPYDDKDDATLH  161 (428)
Q Consensus       108 ~~~~~~~~~~~~--~~~~~~~d~~~~~~l~~~~~v~-~~P---------------~~~lid~~~~dG~i~~~  161 (428)
                      .+.+++|+++++  |..++. +.+....+++.|++. ..|               +++|||+   +|+++..
T Consensus        93 ~~~~~~~~~~~~~~~~~l~~-~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~---~G~i~~~  160 (200)
T 2b7k_A           93 PAVLKEYLSDFHPSILGLTG-TFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDP---EGQFVDA  160 (200)
T ss_dssp             HHHHHHHHTTSCTTCEEEEC-CHHHHHHHHHHTTC--------------CTTTCCCEEEECT---TSCEEEE
T ss_pred             HHHHHHHHHHcCCCceEEeC-CHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECC---CCcEEEE
Confidence            788899998765  544544 444447899999986 344               8899999   9999865

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=99.75  E-value=1e-18  Score=156.37  Aligned_cols=119  Identities=11%  Similarity=0.135  Sum_probs=95.5

Q ss_pred             ccccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCC-------ChH
Q 014225           38 LASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-------DLN  109 (428)
Q Consensus        38 ~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~-------~~~  109 (428)
                      .+..+|+| |.+.+|+++++++++||+++|+||++||++|+.++|.|++++++|++++  +++++|++|.       +.+
T Consensus        24 ~~~~~p~f~l~~~~G~~~~l~~~~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~--v~vv~vs~d~~~~~~~~~~~  101 (190)
T 2vup_A           24 AASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQG--FTVLAFPCNQFGGQEPGNEE  101 (190)
T ss_dssp             CCCSGGGSCCBBTTSSBCCGGGGTTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--CEEEEEECCCSTTCCCSCHH
T ss_pred             CCCcccCeEEEcCCCCEEEHHHcCCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCC--eEEEEEEcCccCCCCCCCHH
Confidence            47889999 9999999999999999999999999999999999999999999999887  9999999984       667


Q ss_pred             HHHHHH-hcCC--CceeccCChHH------HHHH-HhhcCCCCCc------eEEEEcCCCCCCCcccc
Q 014225          110 AFNNYR-ACMP--WLAVPYSDLET------KKAL-NRKFDIEGIP------CLVVLQPYDDKDDATLH  161 (428)
Q Consensus       110 ~~~~~~-~~~~--~~~~~~~d~~~------~~~l-~~~~~v~~~P------~~~lid~~~~dG~i~~~  161 (428)
                      .+++|+ ++++  |..+...|.+.      ...+ .+.|++.++|      +++|||+   +|+++..
T Consensus       102 ~~~~~~~~~~~~~~p~l~~~D~~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~---~G~i~~~  166 (190)
T 2vup_A          102 EIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDR---DGVPVER  166 (190)
T ss_dssp             HHHHHHHHHHCCCSCBBCCCBSSSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECT---TSCEEEE
T ss_pred             HHHHHHHHhcCCCeEEEeecccCcccccHHHHHHHhhcCCcCCCccccccceEEEECC---CCcEEEE
Confidence            788888 6544  32221112110      0111 2347888899      9999999   9999865

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=99.75  E-value=3.4e-18  Score=154.88  Aligned_cols=119  Identities=18%  Similarity=0.242  Sum_probs=104.1

Q ss_pred             hhccCCCCcc----c-CCCCCceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEE
Q 014225          201 LLTNHDRGYL----L-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV  274 (428)
Q Consensus       201 ~~g~~~p~f~----l-~~~g~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~i  274 (428)
                      .+|+++|+|+    + |.+|+ +++|++++||+|||+|| +.|||.|..++..|++++.+|++.         +++|++|
T Consensus        27 ~vG~~APdF~~~a~l~d~~g~-~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~---------g~~vigi   96 (219)
T 3tue_A           27 KINSPAPSFEEVALMPNGSFK-KISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNEL---------NCEVLAC   96 (219)
T ss_dssp             CTTSBCCCCEEEEECTTSCEE-EEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTT---------TEEEEEE
T ss_pred             ccCCcCCCCcccccccCCCCc-EEehHHhCCCEEEEEEecccCCCCCchhHhhHHHHHhhhccC---------CcEEEEe
Confidence            5899999998    6 78888 99999999999999999 789999999999999999999987         8999999


Q ss_pred             EcCCCHHHHHHHHhcC------CccccccCCcchhHHHHhcCcC------ccceEEEECCCCcEEecc
Q 014225          275 STDRDQTSFESYFGTM------PWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       275 s~d~~~~~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~  330 (428)
                      |+| +.....+|..+.      ..++||++.|.+.++++.||+-      ....+||||++|+|+...
T Consensus        97 S~D-s~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~va~~yGv~~~~~g~~~R~tFiIDp~g~Ir~~~  163 (219)
T 3tue_A           97 SID-SEYAHLQWTLQDRKKGGLGTMAIPILADKTKNIARSYGVLEESQGVAYRGLFIIDPHGMLRQIT  163 (219)
T ss_dssp             ESS-CHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred             eCC-chhhHHHHhhhhHHhcCccccccccccCcccHHHHHcCCcccCCCeeEEEEEEECCCCeEEEEE
Confidence            999 556666666542      2478999999999999999982      345899999999998874

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=99.75  E-value=2.3e-18  Score=157.06  Aligned_cols=117  Identities=12%  Similarity=0.179  Sum_probs=100.4

Q ss_pred             cccccccCc-cccC--CC--CEEecccC-CCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChH
Q 014225           37 LLASKDRDY-LLNQ--HG--TQVKVSDL-EGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLN  109 (428)
Q Consensus        37 ~~g~~~pdf-l~~~--~G--~~v~l~~~-~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~  109 (428)
                      .+|..+|+| |.+.  +|  ++++++++ +||+++|+|| ++||++|+.++|.|++++++|++.+  +++|+|++|. .+
T Consensus        22 ~~G~~aP~f~l~~~~~~G~~~~v~l~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~Is~D~-~~   98 (213)
T 2i81_A           22 YVGKEAPFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERN--VELLGCSVDS-KY   98 (213)
T ss_dssp             CBTSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTT--EEEEEEESSC-HH
T ss_pred             cCCCcCCCeEeeccccCCceeEEeHHHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEeCCC-HH
Confidence            579999999 9998  89  89999999 9999999999 9999999999999999999999876  9999999984 55


Q ss_pred             HHHHHHhcC-------CCceec-cCChHHHHHHHhhcCCC-----CCceEEEEcCCCCCCCccccc
Q 014225          110 AFNNYRACM-------PWLAVP-YSDLETKKALNRKFDIE-----GIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       110 ~~~~~~~~~-------~~~~~~-~~d~~~~~~l~~~~~v~-----~~P~~~lid~~~~dG~i~~~~  162 (428)
                      ..++|++.+       ++ .+| +.|.+  ..+++.|++.     .+|+++|||+   +|+++...
T Consensus        99 ~~~~~~~~~~~~~g~~~~-~fp~l~D~~--~~~~~~ygv~~~~g~~~p~~~lID~---~G~i~~~~  158 (213)
T 2i81_A           99 THLAWKKTPLAKGGIGNI-KHTLLSDIT--KSISKDYNVLFDDSVSLRAFVLIDM---NGIVQHLL  158 (213)
T ss_dssp             HHHHHHSSCGGGTCCCSC-SSEEEECTT--SHHHHHTTCEETTTEECEEEEEECT---TSBEEEEE
T ss_pred             HHHHHHHHHHhhCCccCC-CceEEECCc--hHHHHHhCCccccCCcccEEEEECC---CCEEEEEE
Confidence            678888765       32 222 22433  7899999999     8999999999   99998774

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=99.60  E-value=8.4e-20  Score=158.22  Aligned_cols=117  Identities=21%  Similarity=0.299  Sum_probs=100.6

Q ss_pred             ccccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHH-HHHHHh-cCCCcEEEEEEecCCChHHHHHH
Q 014225           38 LASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVD-VYEELR-NNGSDFEVVFVSSDEDLNAFNNY  114 (428)
Q Consensus        38 ~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~-l~~~~~-~~~~~~~ii~vs~D~~~~~~~~~  114 (428)
                      +|..+|+| |.+.+|+++++++++||+++|+||++||++|+.++|.|++ ++++++ +.+  +.+++|++|.+.+.+++|
T Consensus         9 ~g~~~p~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~--~~vv~v~~d~~~~~~~~~   86 (159)
T 2ls5_A            9 IGEMAPDFTITLTDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNAD--FALIGIDRDEPLEKVLAF   86 (159)
Confidence            68899999 9999999999999999999999999999999999999998 999987 544  999999999887788889


Q ss_pred             HhcCCCceeccCChHHHHHHHhhcC--CCCCceEEEEcCCCCCCCcccc
Q 014225          115 RACMPWLAVPYSDLETKKALNRKFD--IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       115 ~~~~~~~~~~~~d~~~~~~l~~~~~--v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      .+++++....+.|.+  ..+.+.|+  +.++|+++|||+   +|+++..
T Consensus        87 ~~~~~~~~~~~~d~~--~~~~~~~~~~~~~~P~~~lid~---~G~i~~~  130 (159)
T 2ls5_A           87 AKSTGVTYPLGLDPG--ADIFAKYALRDAGITRNVLIDR---EGKIVKL  130 (159)
Confidence            888775322222333  78999999  566999999999   9998865

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=99.75  E-value=2.2e-18  Score=155.69  Aligned_cols=118  Identities=19%  Similarity=0.229  Sum_probs=99.7

Q ss_pred             cccccccCc-cccCCCCEEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHH
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNY  114 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~  114 (428)
                      .+|+.+||| |.+.+|++++|++++||+++|+|| ++||++|+.++|.|++++++|  .+  +++++|+.| +.+..++|
T Consensus        53 ~~G~~aPdf~l~d~~G~~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~--~~--v~vv~Is~D-~~~~~~~~  127 (200)
T 3zrd_A           53 QIGDKAKDFTLVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL--EN--TVVLCISSD-LPFAQSRF  127 (200)
T ss_dssp             CTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS--TT--EEEEEEESS-CHHHHTTC
T ss_pred             CCCCCCCCeEEECCCCCEEcHHHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh--CC--CEEEEEECC-CHHHHHHH
Confidence            479999999 999999999999999999999999 789999999999999999999  44  999999998 45668888


Q ss_pred             HhcCCC-ceeccCChHHHHHHHhhcCCC---------CCceEEEEcCCCCCCCcccccc
Q 014225          115 RACMPW-LAVPYSDLETKKALNRKFDIE---------GIPCLVVLQPYDDKDDATLHDG  163 (428)
Q Consensus       115 ~~~~~~-~~~~~~d~~~~~~l~~~~~v~---------~~P~~~lid~~~~dG~i~~~~~  163 (428)
                      .+++++ ....+.|.. ...+.+.|++.         .+|+++|||+   +|+|+....
T Consensus       128 ~~~~~~~~f~~l~D~~-~~~~~~~ygv~~~~~~~~g~~~p~~~lID~---~G~I~~~~~  182 (200)
T 3zrd_A          128 CGAEGLSNVITLSTLR-GADFKQAYGVAITEGPLAGLTARAVVVLDG---QDNVIYSEL  182 (200)
T ss_dssp             TTTTTCTTEEEEETTS-CTHHHHHTTCEECSSTTTTSBCCEEEEECT---TSBEEEEEE
T ss_pred             HHHcCCCCceEEecCc-hHHHHHHhCceeecccCCCccccEEEEECC---CCeEEEEEe
Confidence            888765 333333441 27899999985         3699999999   999987643

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=99.75  E-value=2.2e-18  Score=158.21  Aligned_cols=116  Identities=14%  Similarity=0.210  Sum_probs=96.4

Q ss_pred             cccccccCc-cccC---CCCEEecccCCCCEEEEEEec-CCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHH
Q 014225           37 LLASKDRDY-LLNQ---HGTQVKVSDLEGKVTALYFSA-NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAF  111 (428)
Q Consensus        37 ~~g~~~pdf-l~~~---~G~~v~l~~~~gk~vlv~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~  111 (428)
                      .+|..+|+| |.+.   +|+++++++++||++||+||+ +||++|+.++|.|++++++|++.+  ++||+|++|.. +..
T Consensus        41 ~~G~~aP~f~l~~~~d~~G~~v~l~~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~--v~vv~Is~D~~-~~~  117 (222)
T 3ztl_A           41 LPNRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRN--CQVIACSTDSQ-YSH  117 (222)
T ss_dssp             CSSEECCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTT--EEEEEEESSCH-HHH
T ss_pred             cCCCCCCCeEEecccCCCCcEEeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEECCCH-HHH
Confidence            579999999 8844   559999999999999999996 999999999999999999999877  99999999863 345


Q ss_pred             HHHHhcC---------CCceeccCChHHHHHHHhhcCCC------CCceEEEEcCCCCCCCccccc
Q 014225          112 NNYRACM---------PWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       112 ~~~~~~~---------~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~dG~i~~~~  162 (428)
                      .++.+.+         +|..+  .|.+  ..+.+.|++.      .+|+++|||+   +|+|+...
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~l--~D~~--~~~~~~ygv~~~~~g~~~P~~~lID~---~G~I~~~~  176 (222)
T 3ztl_A          118 LAWDNLDRKSGGLGHMKIPLL--ADRK--QEISKAYGVFDEEDGNAFRGLFIIDP---NGILRQIT  176 (222)
T ss_dssp             HHHHHSCGGGTSCCSCSSCEE--ECSS--SHHHHHTTCBCTTTSSBCEEEEEECT---TSEEEEEE
T ss_pred             HHHHHHhhhhccccccceeEE--eCCc--hHHHHHcCCeecCCCCccceEEEECC---CCeEEEEE
Confidence            6666643         23222  2333  6899999998      8999999999   99998764

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.75  E-value=2.1e-18  Score=157.11  Aligned_cols=117  Identities=19%  Similarity=0.231  Sum_probs=97.8

Q ss_pred             cccccccCc-cccC---CCCEEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHH
Q 014225           37 LLASKDRDY-LLNQ---HGTQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAF  111 (428)
Q Consensus        37 ~~g~~~pdf-l~~~---~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~  111 (428)
                      .+|..+|+| |.+.   +|+++++++++||+++|+|| ++||++|+.++|.|++++++|++.+  +++|+|++|. .+..
T Consensus        20 ~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~--v~vv~Is~D~-~~~~   96 (211)
T 2pn8_A           20 FQSMPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSIN--TEVVACSVDS-QFTH   96 (211)
T ss_dssp             CSSCBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTT--EEEEEEESSC-HHHH
T ss_pred             CCCCcCCCeEeecccCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCC-HHHH
Confidence            468999999 8764   56899999999999999999 9999999999999999999999876  9999999975 4557


Q ss_pred             HHHHhcC-------CCceec-cCChHHHHHHHhhcCCC------CCceEEEEcCCCCCCCccccc
Q 014225          112 NNYRACM-------PWLAVP-YSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       112 ~~~~~~~-------~~~~~~-~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~dG~i~~~~  162 (428)
                      ++|++++       ++ .+| +.|.+  ..+++.|++.      .+|+++|||+   +|+|+...
T Consensus        97 ~~~~~~~~~~~g~~~~-~fp~l~D~~--~~~~~~ygv~~~~~g~~~p~~~lID~---~G~I~~~~  155 (211)
T 2pn8_A           97 LAWINTPRRQGGLGPI-RIPLLSDLT--HQISKDYGVYLEDSGHTLRGLFIIDD---KGILRQIT  155 (211)
T ss_dssp             HHHHTSCGGGTCCCSC-SSCEEECTT--SHHHHHTTCEETTTTEECEEEEEECT---TSBEEEEE
T ss_pred             HHHHHHhhhccCccCC-ceEEEECCc--hHHHHHcCCcccCCCcccceEEEECC---CCEEEEEE
Confidence            7888766       32 222 22433  6899999994      6999999999   99998764

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=99.74  E-value=3.4e-18  Score=154.53  Aligned_cols=117  Identities=18%  Similarity=0.273  Sum_probs=99.2

Q ss_pred             cccccccCc-cccC--CC--CEEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHH
Q 014225           37 LLASKDRDY-LLNQ--HG--TQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA  110 (428)
Q Consensus        37 ~~g~~~pdf-l~~~--~G--~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~  110 (428)
                      .+|..+|+| |.+.  +|  +++++++++||+++|+|| ++||++|+.++|.|++++++|++.+  +++++|+.|. .+.
T Consensus         7 ~~G~~aP~f~l~~~~~~g~~~~v~l~~~~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~--v~vi~Is~D~-~~~   83 (202)
T 1uul_A            7 EDLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIG--CEVLACSMDS-EYS   83 (202)
T ss_dssp             CTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTT--EEEEEEESSC-HHH
T ss_pred             cCCCcCCCcEeeeeecCCCccEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCC-HHH
Confidence            468999999 8887  78  899999999999999999 9999999999999999999999876  9999999985 456


Q ss_pred             HHHHHhcC-------CCceec-cCChHHHHHHHhhcCCC------CCceEEEEcCCCCCCCccccc
Q 014225          111 FNNYRACM-------PWLAVP-YSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       111 ~~~~~~~~-------~~~~~~-~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~dG~i~~~~  162 (428)
                      .++|++++       ++ .+| +.|.+  ..+++.|++.      .+|+++|||+   +|+++...
T Consensus        84 ~~~~~~~~~~~~~~~~~-~~p~l~D~~--~~~~~~ygv~~~~~g~~~P~~~lid~---~G~i~~~~  143 (202)
T 1uul_A           84 HLAWTSIERKRGGLGQM-NIPILADKT--KCIMKSYGVLKEEDGVAYRGLFIIDP---KQNLRQIT  143 (202)
T ss_dssp             HHHHHHSCGGGTCCCSC-SSCEEECTT--CHHHHHHTCEETTTTEECEEEEEECT---TSBEEEEE
T ss_pred             HHHHHHHHHhhCCCCCC-ceeEEECCc--hHHHHHcCCccCCCCceeeEEEEECC---CCEEEEEE
Confidence            78888765       22 222 22332  6899999998      9999999999   99998763

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=99.74  E-value=1.9e-17  Score=150.97  Aligned_cols=76  Identities=17%  Similarity=0.095  Sum_probs=69.2

Q ss_pred             ccccccCc-cccCC-CCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCC-------Ch
Q 014225           38 LASKDRDY-LLNQH-GTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-------DL  108 (428)
Q Consensus        38 ~g~~~pdf-l~~~~-G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~-------~~  108 (428)
                      .+..+||| |.+.+ |++++|++++||+|||+|||+||++|+ ++|.|++++++|++.|  ++||+|++|.       +.
T Consensus        31 ~~~~~pdF~l~d~~~G~~v~Lsd~~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g--~~Vlgvs~d~f~~~e~~~~  107 (215)
T 2i3y_A           31 EKGTIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLTA-QYPELNALQEELKPYG--LVVLGFPCNQFGKQEPGDN  107 (215)
T ss_dssp             CCCCGGGCEEEBSSSSCEEEGGGGTTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGT--EEEEEEECCCSTTCCCSCH
T ss_pred             ccCCcCCcEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCC--eEEEEEEccccCcCCCCCH
Confidence            35679999 99999 999999999999999999999999999 9999999999999887  9999999762       45


Q ss_pred             HHHHHHHh
Q 014225          109 NAFNNYRA  116 (428)
Q Consensus       109 ~~~~~~~~  116 (428)
                      +..++|++
T Consensus       108 ~~i~~f~~  115 (215)
T 2i3y_A          108 KEILPGLK  115 (215)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            67888988

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=99.74  E-value=2.1e-18  Score=150.82  Aligned_cols=116  Identities=16%  Similarity=0.123  Sum_probs=97.8

Q ss_pred             cccccccCc-cccCCCCEEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHH
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNY  114 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~  114 (428)
                      .+|..+|+| |.+.+|+++++++++||+++|+|| ++||++|+.++|.|++++++   .+  +++++|+.|. .+..++|
T Consensus        21 ~~G~~aP~f~l~~~~G~~~~l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~---~~--~~vv~is~d~-~~~~~~~   94 (166)
T 3p7x_A           21 NEGDFAPDFTVLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK---EE--GIVLTISADL-PFAQKRW   94 (166)
T ss_dssp             CTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT---TT--SEEEEEESSC-HHHHHHH
T ss_pred             CCCCCCCCeEEEcCCCCEEeHHHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc---CC--CEEEEEECCC-HHHHHHH
Confidence            469999999 999999999999999999999999 88999999999999999888   44  9999999874 5668888


Q ss_pred             HhcCCCceec-cCCh-HHHHHHHhhcCCCC------CceEEEEcCCCCCCCcccccc
Q 014225          115 RACMPWLAVP-YSDL-ETKKALNRKFDIEG------IPCLVVLQPYDDKDDATLHDG  163 (428)
Q Consensus       115 ~~~~~~~~~~-~~d~-~~~~~l~~~~~v~~------~P~~~lid~~~~dG~i~~~~~  163 (428)
                      .+++++..++ +.|. +  ..+.+.|++..      +|+++|||+   +|+|+....
T Consensus        95 ~~~~~~~~~~~l~D~~~--~~~~~~~gv~~~~~g~~~p~~~liD~---~G~i~~~~~  146 (166)
T 3p7x_A           95 CASAGLDNVITLSDHRD--LSFGENYGVVMEELRLLARAVFVLDA---DNKVVYKEI  146 (166)
T ss_dssp             HHHHTCSSCEEEECTTT--CHHHHHHTCEETTTTEECCEEEEECT---TCBEEEEEE
T ss_pred             HHHcCCCceEEccCCch--hHHHHHhCCccccCCceeeEEEEECC---CCeEEEEEE
Confidence            8876651222 2344 3  68999999975      899999999   999987643

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=99.74  E-value=3.1e-18  Score=148.62  Aligned_cols=116  Identities=14%  Similarity=0.203  Sum_probs=97.6

Q ss_pred             cccccccCc-cccCCCCEEecccCCCC--EEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHH
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSDLEGK--VTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN  112 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk--~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~  112 (428)
                      .+|+.+|+| |.+.+|+++++++++||  +++|+|| ++||++|+.++|.|++++++|++++   ++++|+.| +.+..+
T Consensus         8 ~~G~~~P~f~l~~~~G~~v~l~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~---~vv~is~d-~~~~~~   83 (159)
T 2a4v_A            8 EIGDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA---AVFGLSAD-SVTSQK   83 (159)
T ss_dssp             CTTCBCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC---EEEEEESC-CHHHHH
T ss_pred             CCCCCCCCeEEECCCCCEEeHHHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC---cEEEEeCC-CHHHHH
Confidence            468999999 99999999999999987  8999997 9999999999999999999998874   89999998 456688


Q ss_pred             HHHhcCCCceeccCChHHHHHHHhhcCCCCCc------eEEEEcCCCCCCCccccc
Q 014225          113 NYRACMPWLAVPYSDLETKKALNRKFDIEGIP------CLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       113 ~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P------~~~lid~~~~dG~i~~~~  162 (428)
                      +|.+++++....+.|.+  ..+.+.|++..+|      +++|| +   +|+++...
T Consensus        84 ~~~~~~~~~~~~l~D~~--~~~~~~~gv~~~p~~g~~~~~~li-~---~G~i~~~~  133 (159)
T 2a4v_A           84 KFQSKQNLPYHLLSDPK--REFIGLLGAKKTPLSGSIRSHFIF-V---DGKLKFKR  133 (159)
T ss_dssp             HHHHHHTCSSEEEECTT--CHHHHHHTCBSSSSSCBCCEEEEE-E---TTEEEEEE
T ss_pred             HHHHHhCCCceEEECCc--cHHHHHhCCcccccCCccceEEEE-c---CCEEEEEE
Confidence            88887664222222433  6889999999888      88999 9   99998663

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.74  E-value=9.6e-17  Score=164.05  Aligned_cols=92  Identities=21%  Similarity=0.412  Sum_probs=69.9

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .||+|+|+|||+||++|+++.|.|.++++.+++.        .++.++.|+++.+                        +
T Consensus       369 ~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~--------~~v~~~~id~~~~------------------------~  416 (481)
T 3f8u_A          369 ENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKD--------PNIVIAKMDATAN------------------------D  416 (481)
T ss_dssp             TTCEEEEEEECTTBHHHHHHHHHHHHHHHHTTTC--------SSEEEEEEETTSS------------------------C
T ss_pred             CCCcEEEEEecCcChhHHHhhHHHHHHHHHhccC--------CCEEEEEEECCch------------------------h
Confidence            3789999999999999999999999999998753        2577777776632                        3


Q ss_pred             HHHhcCcCccceEEEECCCCc--EEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGK--TVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKN  363 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~--i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~  363 (428)
                      ++..|+|.++||+++++++|+  ++...|.               ...+.|.+.|++.+..
T Consensus       417 ~~~~~~v~~~Pt~~~~~~~~~~~~~~~~G~---------------~~~~~l~~~l~~~~~~  462 (481)
T 3f8u_A          417 VPSPYEVRGFPTIYFSPANKKLNPKKYEGG---------------RELSDFISYLQREATN  462 (481)
T ss_dssp             CCTTCCCCSSSEEEEECTTCTTSCEECCSC---------------CSHHHHHHHHHHHCSS
T ss_pred             hHhhCCCcccCEEEEEeCCCeEeeeEeCCC---------------CCHHHHHHHHHHhcCC
Confidence            567899999999999988876  3333221               1246677777776554

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=99.74  E-value=4.1e-18  Score=158.39  Aligned_cols=139  Identities=9%  Similarity=0.083  Sum_probs=109.1

Q ss_pred             hhccCCCCccc-CCCCCceecc-ccc--CCcEE-EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEE
Q 014225          201 LLTNHDRGYLL-GHPPDEKVPV-SSL--VGKTV-GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS  275 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g~~~v~l-~~~--~gk~v-ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is  275 (428)
                      .+|.++|+|++ +.+|  .+++ +++  +||++ |++||++||++|..+++.|.+++++|+++         +++||+||
T Consensus         6 ~iG~~aPdF~l~~~~G--~v~l~~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~---------gv~VI~VS   74 (249)
T 3a2v_A            6 LIGERFPEMEVTTDHG--VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRL---------GVDLIGLS   74 (249)
T ss_dssp             CTTSBCCCEEEEETTE--EEEETHHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHT---------TEEEEEEE
T ss_pred             CCCCCCCCeEEEcCCC--CEecHHHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhC---------CcEEEEEE
Confidence            46999999999 8777  6999 999  99964 55788999999999999999999999977         89999999


Q ss_pred             cCCCHHHHHHHHh---cC--CccccccCCcchhHHHHhcCcC-------ccceEEEECCCCcEEeccccchhhcccccCC
Q 014225          276 TDRDQTSFESYFG---TM--PWLALPFGDPTIKELTKYFDVQ-------GIPCLVIIGPEGKTVTKQGRNLINLYQENAY  343 (428)
Q Consensus       276 ~d~~~~~~~~~~~---~~--~~~~~~~~~d~~~~~~~~~~v~-------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~  343 (428)
                      +|. .....+|..   ..  ..++||+..|....+++.||+.       .+|++||||++|+|+....+.+       . 
T Consensus        75 ~Ds-~~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~~~~~~-------~-  145 (249)
T 3a2v_A           75 VDS-VFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPM-------E-  145 (249)
T ss_dssp             SSC-HHHHHHHHHHHHHHTCCCCCSCEEECTTSHHHHHHTCCCTTCSSSCCEEEEEECTTSBEEEEEEECT-------T-
T ss_pred             CCC-HHHHHHHHHHHHHhcCCCCceeEEECCchHHHHHhCCccccCCCcccceEEEECCCCeEEEEEecCC-------c-
Confidence            985 333333333   21  1478899999899999999997       8999999999999999853322       1 


Q ss_pred             CCChHHHHHHHHHHHHHH
Q 014225          344 PFTEAKLEFLEKQMEEEA  361 (428)
Q Consensus       344 p~~~~~~~~L~~~l~~~~  361 (428)
                        .....++|.+.|+++.
T Consensus       146 --~gr~~~Ellr~I~alq  161 (249)
T 3a2v_A          146 --LGRLVDEILRIVKALK  161 (249)
T ss_dssp             --BCCCHHHHHHHHHHHH
T ss_pred             --ccchhHHHHHHHHHHH
Confidence              1122466666666654

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=99.74  E-value=2.7e-18  Score=150.06  Aligned_cols=117  Identities=17%  Similarity=0.192  Sum_probs=98.5

Q ss_pred             cccccccCc-cccCCCCEEecccCCCCEEEEEEecCC-ChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHH
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANW-YPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNY  114 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~  114 (428)
                      .+|..+|+| |.+.+|+++++++++||+++|+||++| |++|+.++|.|++++++|  .+  +++++|+.|. .+..++|
T Consensus        19 ~~G~~~p~f~l~~~~G~~~~l~~~~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~--~~--~~vv~is~d~-~~~~~~~   93 (167)
T 2jsy_A           19 KVGDQAPDFTVLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL--GD--VNVYTISADL-PFAQARW   93 (167)
T ss_dssp             CTTSCCCCCEEEBTTCCEEEHHHHTTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH--SS--CEEEEEECSS-GGGTSCC
T ss_pred             CCCCcCCceEEECCCCCEeeHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHc--CC--CEEEEEECCC-HHHHHHH
Confidence            468999999 999999999999999999999999999 999999999999999999  34  9999999984 4557888


Q ss_pred             HhcCCCceec-cCChHHHHHHHhhcCCCC------CceEEEEcCCCCCCCccccc
Q 014225          115 RACMPWLAVP-YSDLETKKALNRKFDIEG------IPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       115 ~~~~~~~~~~-~~d~~~~~~l~~~~~v~~------~P~~~lid~~~~dG~i~~~~  162 (428)
                      .+++++..+| +.|. ....+.+.|++..      +|+++|||+   +|+++...
T Consensus        94 ~~~~~~~~~~~~~d~-~~~~~~~~~~v~~~~~g~~~p~~~lid~---~G~i~~~~  144 (167)
T 2jsy_A           94 CGANGIDKVETLSDH-RDMSFGEAFGVYIKELRLLARSVFVLDE---NGKVVYAE  144 (167)
T ss_dssp             GGGSSCTTEEEEEGG-GTCHHHHHTTCBBTTTCSBCCEEEEECT---TSCEEEEE
T ss_pred             HHhcCCCCceEeeCC-chhHHHHHhCCccccCCceeeEEEEEcC---CCcEEEEE
Confidence            8887762233 2231 2268889999986      499999999   99998774

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=99.74  E-value=4.8e-17  Score=147.52  Aligned_cols=76  Identities=13%  Similarity=0.067  Sum_probs=68.0

Q ss_pred             ccccccCc-cccCC-CCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecC-------CCh
Q 014225           38 LASKDRDY-LLNQH-GTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-------EDL  108 (428)
Q Consensus        38 ~g~~~pdf-l~~~~-G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D-------~~~  108 (428)
                      ....+|+| |.+.+ |++++|++++||+|||+|||+||++| .++|.|++++++|++.|  ++||+|++|       .+.
T Consensus        13 ~~~~~pdF~l~d~~~G~~v~Ls~~kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g--~~vlgvs~d~f~~~e~~~~   89 (207)
T 2r37_A           13 ISGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYGGLT-GQYIELNALQEELAPFG--LVILGFPCNQFGKQEPGEN   89 (207)
T ss_dssp             --CCGGGCEEEBTTSSCEEEGGGGTTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGT--EEEEEEECCCBTTCCCSCH
T ss_pred             ccCccCCeEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCC--EEEEEEECcccCcCCCCCH
Confidence            35679999 99999 99999999999999999999999999 79999999999999987  999999976       245


Q ss_pred             HHHHHHHh
Q 014225          109 NAFNNYRA  116 (428)
Q Consensus       109 ~~~~~~~~  116 (428)
                      +..++|++
T Consensus        90 ~~i~~f~~   97 (207)
T 2r37_A           90 SEILPTLK   97 (207)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            67888988

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=99.73  E-value=8e-18  Score=156.25  Aligned_cols=118  Identities=18%  Similarity=0.206  Sum_probs=97.3

Q ss_pred             cccccccCc-ccc---CCCCEEecccCCCCEEEEEEec-CCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHH
Q 014225           37 LLASKDRDY-LLN---QHGTQVKVSDLEGKVTALYFSA-NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAF  111 (428)
Q Consensus        37 ~~g~~~pdf-l~~---~~G~~v~l~~~~gk~vlv~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~  111 (428)
                      .+|..+||| |.+   .+|++++|++++||+++|+||+ +||++|+.++|.|++++++|++.|  ++||+|+.|.. +..
T Consensus        49 ~vG~~aPdF~l~~~~d~~G~~vsLsd~~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~g--v~vv~Is~D~~-~~~  125 (240)
T 3qpm_A           49 KISKPAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAIN--TEVVACSVDSQ-FTH  125 (240)
T ss_dssp             CTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTT--EEEEEEESSCH-HHH
T ss_pred             CCCCCCCCcEeeeeeCCCCcEEEHHHhCCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEECCCH-HHH
Confidence            579999999 774   4466999999999999999999 999999999999999999999887  99999999864 456


Q ss_pred             HHHHhcC-------CCceeccCChHHHHHHHhhcCCC------CCceEEEEcCCCCCCCccccc
Q 014225          112 NNYRACM-------PWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       112 ~~~~~~~-------~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~dG~i~~~~  162 (428)
                      ++|++.+       ++.+..+.|.+  ..+.+.|++.      .+|+++|||+   +|+|+...
T Consensus       126 ~~~~~~~~~~~~~~~~~fp~l~D~~--~~v~~~ygv~~~~~g~~~p~~flID~---~G~I~~~~  184 (240)
T 3qpm_A          126 LAWIITPRKQGGLGPMKIPLLSDLT--HQISKDYGVYLEDQGHTLRGLFIIDE---KGVLRQIT  184 (240)
T ss_dssp             HHHHHSCGGGTCCCSCSSCEEECTT--SHHHHHTTCEETTTTEECEEEEEECT---TSBEEEEE
T ss_pred             HHHHHHHHhhcCCCCCceeEEeCch--HHHHHHhCCccccCCCccceEEEEcC---CCeEEEEE
Confidence            6777654       22211222443  7899999997      6899999999   99998763

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=99.73  E-value=8e-18  Score=146.66  Aligned_cols=117  Identities=15%  Similarity=0.255  Sum_probs=99.2

Q ss_pred             cccccccCc-cc--cCCC--CEEeccc-CCCCEEEEEEe-cCCChhhh-hhHHHHHHHHHHHhcCCCcEE-EEEEecCCC
Q 014225           37 LLASKDRDY-LL--NQHG--TQVKVSD-LEGKVTALYFS-ANWYPPCG-NFTGVLVDVYEELRNNGSDFE-VVFVSSDED  107 (428)
Q Consensus        37 ~~g~~~pdf-l~--~~~G--~~v~l~~-~~gk~vlv~F~-a~wC~~C~-~~~p~l~~l~~~~~~~~~~~~-ii~vs~D~~  107 (428)
                      .+|+.+|+| |.  +.+|  +++++++ ++||+++|+|| ++||++|+ .++|.|++++++|++.|  ++ +++||.|. 
T Consensus         5 ~~G~~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~--v~~vv~Is~d~-   81 (162)
T 1tp9_A            5 AVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKG--VTEILCISVND-   81 (162)
T ss_dssp             CTTCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTT--CCCEEEEESSC-
T ss_pred             CCCCCCCCeEEEeecCCCCceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEEECCC-
Confidence            368999999 75  8999  9999999 89999999999 89999999 99999999999999877  99 99999984 


Q ss_pred             hHHHHHHHhcCCCc-eec-cCChHHHHHHHhhcCCC-----------CCceEEEEcCCCCCCCccccc
Q 014225          108 LNAFNNYRACMPWL-AVP-YSDLETKKALNRKFDIE-----------GIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       108 ~~~~~~~~~~~~~~-~~~-~~d~~~~~~l~~~~~v~-----------~~P~~~lid~~~~dG~i~~~~  162 (428)
                      .+..++|.++++.. .+| ..|.+  ..+++.||+.           .+|+++|||    +|+|++..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~l~D~~--~~~~~~~gv~~~~~~~g~~~~~~p~~~vid----~G~i~~~~  143 (162)
T 1tp9_A           82 PFVMKAWAKSYPENKHVKFLADGS--ATYTHALGLELDLQEKGLGTRSRRFALLVD----DLKVKAAN  143 (162)
T ss_dssp             HHHHHHHHHTCTTCSSEEEEECTT--SHHHHHTTCEEEETTTTSEEEECCEEEEEE----TTEEEEEE
T ss_pred             HHHHHHHHHhcCCCCCeEEEECCC--chHHHHcCcccccccCCCCccceeEEEEEE----CCEEEEEE
Confidence            56788999887752 233 33544  7899999986           389999998    79998764

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=99.73  E-value=9.6e-18  Score=153.74  Aligned_cols=117  Identities=18%  Similarity=0.249  Sum_probs=98.5

Q ss_pred             cccccccCc-cc---cCCCCEEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHH
Q 014225           37 LLASKDRDY-LL---NQHGTQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAF  111 (428)
Q Consensus        37 ~~g~~~pdf-l~---~~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~  111 (428)
                      .+|..+|+| |.   +.+|+++++++++||+++|+|| ++||++|+.++|.|++++++|++.+  +++|+|+.|. .+..
T Consensus        28 ~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~--v~vv~Is~D~-~~~~  104 (220)
T 1zye_A           28 AVTQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVN--CEVVAVSVDS-HFSH  104 (220)
T ss_dssp             CTTSBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTT--EEEEEEESSC-HHHH
T ss_pred             cCCCCCCCcEEEeeeCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCC-HHHH
Confidence            479999999 76   4678999999999999999999 9999999999999999999999877  9999999985 4557


Q ss_pred             HHHHhcC-------CCceec-cCChHHHHHHHhhcCCC------CCceEEEEcCCCCCCCccccc
Q 014225          112 NNYRACM-------PWLAVP-YSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       112 ~~~~~~~-------~~~~~~-~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~dG~i~~~~  162 (428)
                      ++|++.+       ++ .+| +.|.+  ..+++.|++.      .+|+++|||+   +|+++...
T Consensus       105 ~~~~~~~~~~~g~~~~-~fp~l~D~~--~~i~~~ygv~~~~~g~~~P~~~liD~---~G~I~~~~  163 (220)
T 1zye_A          105 LAWINTPRKNGGLGHM-NIALLSDLT--KQISRDYGVLLEGPGLALRGLFIIDP---NGVIKHLS  163 (220)
T ss_dssp             HHHHTSCGGGTCCCSC-SSEEEECTT--SHHHHHTTCEETTTTEECEEEEEECT---TSBEEEEE
T ss_pred             HHHHHHHHHhCCCcCC-ceEEEECCc--HHHHHHhCCeecCCCcccceEEEECC---CCEEEEEE
Confidence            7777755       22 222 22333  7899999998      9999999999   99998763

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.73  E-value=5.6e-18  Score=148.03  Aligned_cols=114  Identities=18%  Similarity=0.204  Sum_probs=97.7

Q ss_pred             cccccccCc-cccC--CCCEEecccC-CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHH
Q 014225           37 LLASKDRDY-LLNQ--HGTQVKVSDL-EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFN  112 (428)
Q Consensus        37 ~~g~~~pdf-l~~~--~G~~v~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~  112 (428)
                      .+|..+|+| |.+.  +|++++++++ +||+++|+||++||++|+.++|.|++++++    +  +.+++|+.|.+.+.++
T Consensus        23 ~~G~~~P~f~l~~~~~~g~~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~----~--v~vv~v~~~~~~~~~~   96 (168)
T 2b1k_A           23 LIGKPVPKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ----G--IRVVGMNYKDDRQKAI   96 (168)
T ss_dssp             TTTSBCCCCEEEESSSTTCEEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT----T--CCEEEEEESCCHHHHH
T ss_pred             ccCCcCCCeEeecccCCCcEeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC----C--CEEEEEECCCChHHHH
Confidence            579999999 9998  9999999985 999999999999999999999999998875    4  8899999999999999


Q ss_pred             HHHhcCCCceec-cCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          113 NYRACMPWLAVP-YSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       113 ~~~~~~~~~~~~-~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +|++++++.... ..+..  ..+++.|++.++|++++|++   +|+++..
T Consensus        97 ~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~---~G~i~~~  141 (168)
T 2b1k_A           97 SWLKELGNPYALSLFDGD--GMLGLDLGVYGAPETFLIDG---NGIIRYR  141 (168)
T ss_dssp             HHHHHHCCCCSEEEEETT--CHHHHHHTCCSSSEEEEECT---TSBEEEE
T ss_pred             HHHHHcCCCCceeeECcc--hHHHHHcCccccCEEEEECC---CCeEEEE
Confidence            999877643221 11332  67899999999999999999   9998755

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=99.72  E-value=7.5e-18  Score=148.02  Aligned_cols=115  Identities=12%  Similarity=0.143  Sum_probs=96.5

Q ss_pred             cccccccCc-cccCCCCEEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHH
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNY  114 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~  114 (428)
                      .+|..+|+| |.+.+|+++++++++||+++|+|| ++||++|+.++|.|++++++|  .+  +++++|+.|. .+..++|
T Consensus        22 ~~g~~~P~f~l~~~~G~~~~l~~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~--~~--v~vv~Is~d~-~~~~~~~   96 (171)
T 2yzh_A           22 KVGDRAPEAVVVTKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGM--EG--VDVTVVSMDL-PFAQKRF   96 (171)
T ss_dssp             CTTSBCCCEEEEETTSCEEEESSCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TT--EEEEEEESSC-HHHHHHH
T ss_pred             CCCCcCCceEEECCCCCEeeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHc--CC--ceEEEEeCCC-HHHHHHH
Confidence            368999999 999999999999999999999999 899999999999999999999  44  9999999985 5568888


Q ss_pred             HhcCCC-ceeccCC-hHHHHHHHhhcCCC---------CCceEEEEcCCCCCCCccccc
Q 014225          115 RACMPW-LAVPYSD-LETKKALNRKFDIE---------GIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       115 ~~~~~~-~~~~~~d-~~~~~~l~~~~~v~---------~~P~~~lid~~~~dG~i~~~~  162 (428)
                      .+++++ ....+.| .+  ..+ +.|++.         .+|+++|||+   +|+++...
T Consensus        97 ~~~~~~~~~~~l~D~~~--~~~-~~~gv~~~~~~~~g~~~p~~~liD~---~G~i~~~~  149 (171)
T 2yzh_A           97 CESFNIQNVTVASDFRY--RDM-EKYGVLIGEGALKGILARAVFIIDK---EGKVAYVQ  149 (171)
T ss_dssp             HHHTTCCSSEEEECTTT--CGG-GGGTCBBCSSTTTTSBCCEEEEECT---TSBEEEEE
T ss_pred             HHHcCCCCeEEeecCcc--CcH-HHhCCEecccccCCceeeEEEEEcC---CCeEEEEE
Confidence            888765 2222234 33  567 999985         2699999999   99998764

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.72  E-value=4e-18  Score=148.04  Aligned_cols=110  Identities=15%  Similarity=0.239  Sum_probs=93.5

Q ss_pred             cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecC-----CChHHHHHHHhcCCC
Q 014225           46 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-----EDLNAFNNYRACMPW  120 (428)
Q Consensus        46 l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D-----~~~~~~~~~~~~~~~  120 (428)
                      |.+.+|+++++++++||+++|+||++||++|+.++|.|++++++|+..+  +.+++|++|     .+.+.+.++++.+++
T Consensus        23 l~~~~g~~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~  100 (164)
T 2h30_A           23 MKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSS--ANLITVASPGFLHEKKDGEFQKWYAGLNY  100 (164)
T ss_dssp             CEETTSSBGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTT--SEEEEEECTTSTTCCCTTHHHHHHTTSCC
T ss_pred             cCCCCCCEeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCC--cEEEEEEcCCCccccCHHHHHHHHHhCCC
Confidence            7889999999999999999999999999999999999999999998877  999999985     345678888887766


Q ss_pred             ceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          121 LAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       121 ~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      ..++. +.+....+++.|++.++|+++|||+   +|+++..
T Consensus       101 ~~~~~-~~d~~~~~~~~~~v~~~P~~~lid~---~G~i~~~  137 (164)
T 2h30_A          101 PKLPV-VTDNGGTIAQNLNISVYPSWALIGK---DGDVQRI  137 (164)
T ss_dssp             TTSCE-EECTTCHHHHHTTCCSSSEEEEECT---TSCEEEE
T ss_pred             CcceE-EEcCchHHHHHcCCCccceEEEECC---CCcEEEE
Confidence            43332 1122268999999999999999999   9988764

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.72  E-value=6.7e-18  Score=145.26  Aligned_cols=115  Identities=15%  Similarity=0.240  Sum_probs=96.6

Q ss_pred             cccccccCc-cccCCC--------CEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCC
Q 014225           37 LLASKDRDY-LLNQHG--------TQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED  107 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G--------~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~  107 (428)
                      .+|..+|+| +.+.+|        +.+++++++||+++|+||++||++|+.++|.|++++++   .  ++.+++|++|.+
T Consensus         9 ~~g~~~p~f~l~~~~g~~~~~~~~~~~~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~---~--~v~~v~v~~~~~   83 (156)
T 1kng_A            9 LIGRPAPQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKD---K--RFQLVGINYKDA   83 (156)
T ss_dssp             ---CBCCCCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTC---T--TSEEEEEEESCC
T ss_pred             HhCCCCCCceeeeccCcccccccCceechHHhCCCEEEEEEEcccCHhHHHHHHHHHHHHhc---C--CeEEEEEECCCC
Confidence            568999999 999999        99999999999999999999999999999999998876   2  399999999999


Q ss_pred             hHHHHHHHhcCCCcee-ccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          108 LNAFNNYRACMPWLAV-PYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       108 ~~~~~~~~~~~~~~~~-~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      .+.++++++++++... ...+..  ..+++.|++.++|++++||+   +|+++..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~~id~---~G~i~~~  133 (156)
T 1kng_A           84 ADNARRFLGRYGNPFGRVGVDAN--GRASIEWGVYGVPETFVVGR---EGTIVYK  133 (156)
T ss_dssp             HHHHHHHHHHHCCCCSEEEEETT--SHHHHHTTCCSSCEEEEECT---TSBEEEE
T ss_pred             HHHHHHHHHHcCCCCceeeeCch--hHHHHhcCcCccCeEEEEcC---CCCEEEE
Confidence            9999999988764221 111322  68999999999999999999   9988764

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=99.71  E-value=1.4e-17  Score=146.90  Aligned_cols=115  Identities=15%  Similarity=0.174  Sum_probs=93.4

Q ss_pred             cccccccCc-cccCCCCEEecccCCCCEEEEEEecCC-ChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHH
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANW-YPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNY  114 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~  114 (428)
                      .+|..+|+| |.+.+|+++++++++||+++|+||++| |++|+.++|.|++++++   .+  +++|+|+.|. .+..++|
T Consensus        19 ~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~---~~--v~vv~Is~D~-~~~~~~~   92 (175)
T 1xvq_A           19 AVGSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA---SG--ATVLCVSKDL-PFAQKRF   92 (175)
T ss_dssp             CTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH---TT--CEEEEEESSC-HHHHTTC
T ss_pred             CcCCcCCCeEEECCCCCEEeHHHcCCCEEEEEEEeCCCCchHHHHHHHHHHHHhh---cC--CEEEEEECCC-HHHHHHH
Confidence            468999999 999999999999999999999999999 99999999999999998   33  9999999975 4456888


Q ss_pred             HhcCCCceec-cCChHHHHHHHhhcCCCCC---------ceEEEEcCCCCCCCccccc
Q 014225          115 RACMPWLAVP-YSDLETKKALNRKFDIEGI---------PCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       115 ~~~~~~~~~~-~~d~~~~~~l~~~~~v~~~---------P~~~lid~~~~dG~i~~~~  162 (428)
                      ++++++..++ +.|.+  ..+.+.|++..+         |+++|||+   +|+++...
T Consensus        93 ~~~~~~~~~~~l~D~~--~~~~~~~gv~~~~~~~~g~~~p~~~lid~---~G~I~~~~  145 (175)
T 1xvq_A           93 CGAEGTENVMPASAFR--DSFGEDYGVTIADGPMAGLLARAIVVIGA---DGNVAYTE  145 (175)
T ss_dssp             C------CEEEEECTT--SSHHHHTTCBBCSSTTTTSBCSEEEEECT---TSBEEEEE
T ss_pred             HHHcCCCCceEeeCCH--HHHHHHhCCcccccccCCcccceEEEECC---CCeEEEEE
Confidence            8877652233 22433  678999999877         99999999   99998764

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=99.70  E-value=8.2e-18  Score=149.71  Aligned_cols=119  Identities=13%  Similarity=0.208  Sum_probs=97.4

Q ss_pred             ccccccccCc-cccC--CC-CEEeccc-CCCC-EEEEEEecCCChhhhh-hHHHHHHHHHHHhcCCCcEE-EEEEecCCC
Q 014225           36 SLLASKDRDY-LLNQ--HG-TQVKVSD-LEGK-VTALYFSANWYPPCGN-FTGVLVDVYEELRNNGSDFE-VVFVSSDED  107 (428)
Q Consensus        36 ~~~g~~~pdf-l~~~--~G-~~v~l~~-~~gk-~vlv~F~a~wC~~C~~-~~p~l~~l~~~~~~~~~~~~-ii~vs~D~~  107 (428)
                      -.+|+.+|+| |.+.  +| ++++|++ ++|| +||++||++|||+|+. ++|.|++++++|++.|  ++ |++||.|. 
T Consensus        26 l~vG~~aPdf~l~~~~~~G~~~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~g--v~~vv~Is~d~-  102 (184)
T 3uma_A           26 IAVGDKLPNATFKEKTADGPVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARG--VDDIAVVAVND-  102 (184)
T ss_dssp             CCTTCBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTT--CCEEEEEESSC-
T ss_pred             CCCCCCCCCcEeecccCCCceEEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcC--CCEEEEEECCC-
Confidence            3579999999 9988  99 9999999 8999 5566677999999999 7999999999999988  88 99999974 


Q ss_pred             hHHHHHHHhcCCCc--eeccCChHHHHHHHhhcCCC-----------CCceEEEEcCCCCCCCcccccc
Q 014225          108 LNAFNNYRACMPWL--AVPYSDLETKKALNRKFDIE-----------GIPCLVVLQPYDDKDDATLHDG  163 (428)
Q Consensus       108 ~~~~~~~~~~~~~~--~~~~~d~~~~~~l~~~~~v~-----------~~P~~~lid~~~~dG~i~~~~~  163 (428)
                      ....++|.+++++.  +....|.+  ..+++.||+.           ..|+++|| .   +|+|++...
T Consensus       103 ~~~~~~f~~~~~~~~~fp~l~D~~--~~va~~yGv~~~~~~~g~g~~~~r~tfiI-d---dG~I~~~~~  165 (184)
T 3uma_A          103 LHVMGAWATHSGGMGKIHFLSDWN--AAFTKAIGMEIDLSAGTLGIRSKRYSMLV-E---DGVVKALNI  165 (184)
T ss_dssp             HHHHHHHHHHHTCTTTSEEEECTT--CHHHHHTTCEEEEGGGTCEEEECCEEEEE-E---TTEEEEEEE
T ss_pred             HHHHHHHHHHhCCCCceEEEEcCc--hHHHHHcCCceeccccCCcccceeEEEEE-C---CCEEEEEEE
Confidence            56678888876653  22233544  7899999985           35889999 4   899987744

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=99.70  E-value=2.3e-17  Score=144.38  Aligned_cols=122  Identities=24%  Similarity=0.355  Sum_probs=97.4

Q ss_pred             ccccccccCc-cccCCCCEEecccCCCCEEEEEEecCCChh-hhhhHHHHHHHHHHHhcCC-CcEEEEEEecCC---ChH
Q 014225           36 SLLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPP-CGNFTGVLVDVYEELRNNG-SDFEVVFVSSDE---DLN  109 (428)
Q Consensus        36 ~~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~~~~-~~~~ii~vs~D~---~~~  109 (428)
                      .+.|..+|+| |.+.+| ++++++++||+++|+||++||++ |+.++|.|+++++++++.+ .++++++|++|.   +.+
T Consensus        10 ~~~G~~~p~f~l~~~~g-~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~   88 (172)
T 2k6v_A           10 RLLNPKPVDFALEGPQG-PVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPE   88 (172)
T ss_dssp             EEEEEEECCCEEECSSS-EEEGGGSTTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHH
T ss_pred             cccCCCCCCeEEEcCCC-CCcHHHhCCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHH
Confidence            4568899999 999999 99999999999999999999997 9999999999999998641 139999999984   457


Q ss_pred             HHHHHHhcCCCceeccCCh-HHHHHHHhhcCC---------------CCCceEEEEcCCCCCCCccccc
Q 014225          110 AFNNYRACMPWLAVPYSDL-ETKKALNRKFDI---------------EGIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       110 ~~~~~~~~~~~~~~~~~d~-~~~~~l~~~~~v---------------~~~P~~~lid~~~~dG~i~~~~  162 (428)
                      .+++|+++++.....+.+. .....+++.|++               .++|+++|||    +|+++...
T Consensus        89 ~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid----~G~i~~~~  153 (172)
T 2k6v_A           89 VADRYAKAFHPSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK----EGRLVLLY  153 (172)
T ss_dssp             HHHHHHHHHCTTEEEECCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE----TTEEEEEE
T ss_pred             HHHHHHHHhCCCcEEEeCCHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE----CCEEEEEE
Confidence            7888988765422222232 223577777664               5789999999    79887653

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=99.70  E-value=2.7e-17  Score=144.85  Aligned_cols=118  Identities=15%  Similarity=0.191  Sum_probs=96.4

Q ss_pred             cccccccCc-cc-cCCCCEEeccc-CCCCEEE-EEEecCCChhhh-hhHHHHHHHHHHHhcCCCcEEEEE-EecCCChHH
Q 014225           37 LLASKDRDY-LL-NQHGTQVKVSD-LEGKVTA-LYFSANWYPPCG-NFTGVLVDVYEELRNNGSDFEVVF-VSSDEDLNA  110 (428)
Q Consensus        37 ~~g~~~pdf-l~-~~~G~~v~l~~-~~gk~vl-v~F~a~wC~~C~-~~~p~l~~l~~~~~~~~~~~~ii~-vs~D~~~~~  110 (428)
                      .+|..+||| |. +.+|++++|++ ++||+++ ++||++||++|+ .++|.|++++++|++.|  +++|+ ||.|. ...
T Consensus        16 ~vG~~aPdf~l~~~~~g~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~g--v~vv~~iS~D~-~~~   92 (173)
T 3mng_A           16 KVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKG--VQVVACLSVND-AFV   92 (173)
T ss_dssp             CTTCBCCCCEEECSSTTCEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTT--CCEEEEEESSC-HHH
T ss_pred             CCCCCCCCeEeeeCCCCCEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCC--CEEEEEEcCCC-HHH
Confidence            469999999 99 99999999999 5999554 555699999999 59999999999999988  99997 88875 566


Q ss_pred             HHHHHhcCCCc--eeccCChHHHHHHHhhcCCC-------------CCceEEEEcCCCCCCCcccccc
Q 014225          111 FNNYRACMPWL--AVPYSDLETKKALNRKFDIE-------------GIPCLVVLQPYDDKDDATLHDG  163 (428)
Q Consensus       111 ~~~~~~~~~~~--~~~~~d~~~~~~l~~~~~v~-------------~~P~~~lid~~~~dG~i~~~~~  163 (428)
                      .++|.++++..  +...+|.+  ..+++.||+.             ..|+++|||    +|+|++...
T Consensus        93 ~~~f~~~~~~~~~fp~l~D~~--~~va~~yGv~~~~~~~~~~g~~~~~r~tfvID----dG~I~~~~v  154 (173)
T 3mng_A           93 TGEWGRAHKAEGKVRLLADPT--GAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQ----DGIVKALNV  154 (173)
T ss_dssp             HHHHHHHTTCTTTCEEEECTT--CHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEE----TTEEEEEEE
T ss_pred             HHHHHHHhCCCCceEEEECCC--hHHHHHhCCCcccccccccCCcceEEEEEEEE----CCEEEEEEE
Confidence            88888887753  22233544  7899999885             459999999    799987643

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.70  E-value=2.3e-17  Score=161.10  Aligned_cols=118  Identities=14%  Similarity=0.081  Sum_probs=101.0

Q ss_pred             cccccccCc-c-----ccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecC-----
Q 014225           37 LLASKDRDY-L-----LNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-----  105 (428)
Q Consensus        37 ~~g~~~pdf-l-----~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D-----  105 (428)
                      .+|..+|+| +     .+.+|+++++++++||+|||+||++||++|+.++|.|++++++|++.+  +++|+|++|     
T Consensus        52 ~vG~~aPdF~~~~~wL~d~dG~~vsLsdl~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~--v~vi~Vs~d~~~~~  129 (352)
T 2hyx_A           52 ESCGTAPDLKGITGWLNTPGNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSG--LAVIGVHTPEYAFE  129 (352)
T ss_dssp             CCCCBCCCCCSCCEEESSGGGCCCCGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT--EEEEEEECCSSGGG
T ss_pred             CCCCcCCCccccccccCCCCCCEEcHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCC--eEEEEEECCccccc
Confidence            568899999 3     478999999999999999999999999999999999999999999876  999999975     


Q ss_pred             CChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          106 EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      .+.+.+++|++++++......|.+  ..+++.|++.++|+++|||+   +|+++..
T Consensus       130 d~~~~~~~~~~~~~l~fpv~~D~~--~~l~~~ygV~~~Pt~~lID~---~G~Iv~~  180 (352)
T 2hyx_A          130 KVPGNVAKGAANLGISYPIALDNN--YATWTNYRNRYWPAEYLIDA---TGTVRHI  180 (352)
T ss_dssp             GCHHHHHHHHHHHTCCSCEEECTT--SHHHHHTTCCEESEEEEECT---TSBEEEE
T ss_pred             CCHHHHHHHHHHcCCCccEEeCCc--HHHHHHcCCCccCEEEEEeC---CCeEEEE
Confidence            567889999987764322222333  68899999999999999999   9999865

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=99.70  E-value=2.2e-17  Score=154.39  Aligned_cols=118  Identities=18%  Similarity=0.201  Sum_probs=97.0

Q ss_pred             cccccccCc-cc---cCCCCEEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHH
Q 014225           37 LLASKDRDY-LL---NQHGTQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAF  111 (428)
Q Consensus        37 ~~g~~~pdf-l~---~~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~  111 (428)
                      .+|..+||| |.   +.+|++++|++++||++||+|| ++||++|..++|.|++++++|++.|  ++||+|++|.. ...
T Consensus        63 ~vG~~aPdF~l~~l~d~~G~~vsLsd~kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~g--v~vv~IS~D~~-~~~  139 (254)
T 3tjj_A           63 KISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSIN--TEVVACSVDSQ-FTH  139 (254)
T ss_dssp             CTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTT--EEEEEEESSCH-HHH
T ss_pred             CCCCCCCCcEeeeecCCCCcEEeHHHHCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcC--CEEEEEcCCCH-HHH
Confidence            479999999 76   4467899999999999999999 9999999999999999999999887  99999999854 456


Q ss_pred             HHHHhcC-------CCceeccCChHHHHHHHhhcCCC------CCceEEEEcCCCCCCCccccc
Q 014225          112 NNYRACM-------PWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       112 ~~~~~~~-------~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~dG~i~~~~  162 (428)
                      .++++.+       ++.+..+.|.+  ..+++.|++.      .+|++||||+   +|+|+...
T Consensus       140 ~~~~~~~~~~~g~~~~~fp~l~D~~--~~va~~ygv~~~~~g~~~p~tflID~---~G~I~~~~  198 (254)
T 3tjj_A          140 LAWINTPRRQGGLGPIRIPLLSDLT--HQISKDYGVYLEDSGHTLRGLFIIDD---KGILRQIT  198 (254)
T ss_dssp             HHHHTSCGGGTSCCSCSSCEEECTT--SHHHHHHTCEETTTTEECEEEEEECT---TSBEEEEE
T ss_pred             HHHHHHHHHhcCCcccccceeeCcH--HHHHHHcCCccccCCCccceEEEECC---CCeEEEEE
Confidence            6777654       22111122443  7899999985      5899999999   99998763

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=99.69  E-value=5e-17  Score=157.18  Aligned_cols=132  Identities=14%  Similarity=0.146  Sum_probs=107.4

Q ss_pred             cCCCCccc-CCCCCceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHH
Q 014225          204 NHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQT  281 (428)
Q Consensus       204 ~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~  281 (428)
                      .++|+|+| +.+|+ +++|++++||+|||+|| +.|||.|..+++.|.+    ..         ..+++|++||.| +..
T Consensus         2 ak~p~F~l~~~~G~-~~~Lsd~~Gk~vvl~F~p~~~tp~C~~e~~~~~~----~~---------~~~~~v~gis~D-~~~   66 (322)
T 4eo3_A            2 ARVKHFELLTDEGK-TFTHVDLYGKYTILFFFPKAGTSGSTREAVEFSR----EN---------FEKAQVVGISRD-SVE   66 (322)
T ss_dssp             CBCCCCEEEETTSC-EEEGGGTTTSEEEEEECSSTTSHHHHHHHHHHHH----SC---------CTTEEEEEEESC-CHH
T ss_pred             CCCCCcEEECCCcC-EEeHHHhCCCeEEEEEECCCCCCCCHHHHHHHHH----Hh---------hCCCEEEEEeCC-CHH
Confidence            36899999 99999 99999999999999999 5799999999887753    11         237999999998 677


Q ss_pred             HHHHHHhcCCccccccCCcchhHHHHhcCc----CccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHH
Q 014225          282 SFESYFGTMPWLALPFGDPTIKELTKYFDV----QGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQM  357 (428)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v----~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l  357 (428)
                      ..++|..+.+ ++||++.|.+..+++.|||    ..+|++||||++|+|++....           -......+++.+.+
T Consensus        67 ~~~~f~~~~~-l~fp~l~D~~~~v~~~ygv~~~~~~~r~tfiId~~G~i~~~~~~-----------v~~~~h~~~~l~~~  134 (322)
T 4eo3_A           67 ALKRFKEKND-LKVTLLSDPEGILHEFFNVLENGKTVRSTFLIDRWGFVRKEWRR-----------VKVEGHVQEVKEAL  134 (322)
T ss_dssp             HHHHHHHHHT-CCSEEEECTTCHHHHHTTCEETTEECCEEEEECTTSBEEEEEES-----------CCSTTHHHHHHHHH
T ss_pred             HHHHHHHhhC-CceEEEEcCchHHHHhcCCCCCCcCccEEEEECCCCEEEEEEeC-----------CCccccHHHHHHHH
Confidence            8888888776 7899999999999999999    458899999999999976422           12344566676666


Q ss_pred             HHHHh
Q 014225          358 EEEAK  362 (428)
Q Consensus       358 ~~~~~  362 (428)
                      +++..
T Consensus       135 ~~~~~  139 (322)
T 4eo3_A          135 DRLIE  139 (322)
T ss_dssp             HHHHH
T ss_pred             hhhch
Confidence            66543

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=99.67  E-value=2.8e-17  Score=144.60  Aligned_cols=119  Identities=13%  Similarity=0.250  Sum_probs=94.7

Q ss_pred             cccccccccCc-cccC----CC-----CEEecccC-CCC-EEEEEEecCCChhhhhh-HHHHHHHHHHHhcCCCcEE-EE
Q 014225           35 SSLLASKDRDY-LLNQ----HG-----TQVKVSDL-EGK-VTALYFSANWYPPCGNF-TGVLVDVYEELRNNGSDFE-VV  100 (428)
Q Consensus        35 ~~~~g~~~pdf-l~~~----~G-----~~v~l~~~-~gk-~vlv~F~a~wC~~C~~~-~p~l~~l~~~~~~~~~~~~-ii  100 (428)
                      ...+|..+|+| |.+.    +|     ++++++++ +|| +||++||++||++|+.+ +|.|++++++|++.|  ++ |+
T Consensus         6 g~~~g~~aP~f~l~~~~~~~~G~~~~~~~v~l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g--~~~vv   83 (171)
T 2pwj_A            6 GTDILSAASNVSLQKARTWDEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKG--VDSVI   83 (171)
T ss_dssp             ----CCCSSSBCCCSCEECCCSSCTTCCCEEHHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTT--CSEEE
T ss_pred             cccccCcCCCeEEecccccccCCccCcceEEHHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEE
Confidence            34567899999 9887    57     89999996 996 77889999999999999 999999999999887  88 99


Q ss_pred             EEecCCChHHHHHHHhcCCC-ceec-cCChHHHHHHHhhcCCCC-----------CceEEEEcCCCCCCCccccc
Q 014225          101 FVSSDEDLNAFNNYRACMPW-LAVP-YSDLETKKALNRKFDIEG-----------IPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       101 ~vs~D~~~~~~~~~~~~~~~-~~~~-~~d~~~~~~l~~~~~v~~-----------~P~~~lid~~~~dG~i~~~~  162 (428)
                      +||.|. ....++|.+++++ ..+| ..|.+  ..+++.||+..           .|++++|+    +|+|++..
T Consensus        84 ~Is~d~-~~~~~~~~~~~~~~~~fp~l~D~~--~~~~~~ygv~~~~~~~~~g~~~~~~t~~I~----~G~I~~~~  151 (171)
T 2pwj_A           84 CVAIND-PYTVNAWAEKIQAKDAIEFYGDFD--GSFHKSLELTTDLSAGLLGIRSERWSAYVV----DGKVKALN  151 (171)
T ss_dssp             EEESSC-HHHHHHHHHHTTCTTTSEEEECTT--CHHHHHHTCEEECTTTTCCEEECCEEEEEE----TTEEEEEE
T ss_pred             EEeCCC-HHHHHHHHHHhCCCCceEEEECCc--cHHHHHhCCccccccccCCcccceeEEEEE----CCEEEEEE
Confidence            999975 5578889988875 2333 23543  78899998852           56888888    79998764

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=99.67  E-value=7.1e-17  Score=148.92  Aligned_cols=116  Identities=15%  Similarity=0.270  Sum_probs=96.1

Q ss_pred             cccccccCc-cccCCCCEEecccCCCC-EEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHH
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSDLEGK-VTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNN  113 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk-~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~  113 (428)
                      .+|+.+|+| +.+.+| ++++++++|| +++|+|| ++||++|..++|.|++++++|++++  +++|+||+|.. +..++
T Consensus         4 ~iG~~aPdF~l~~~~G-~v~l~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~--v~vigIS~D~~-~~~~~   79 (233)
T 2v2g_A            4 TLGEVFPNFEADSTIG-KLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRG--VKLIALSCDNV-ADHKE   79 (233)
T ss_dssp             CTTCBCCCCEEEETTC-CEEHHHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTT--EEEEEEESSCH-HHHHH
T ss_pred             CCCCCCCCcEEecCCC-CEEHHHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcC--CEEEEEcCCCH-HHHHH
Confidence            368999999 999999 8999999998 9999998 9999999999999999999999987  99999999864 44566


Q ss_pred             HHh------cC--CCceec-cCChHHHHHHHhhcCCC------------CCceEEEEcCCCCCCCccccc
Q 014225          114 YRA------CM--PWLAVP-YSDLETKKALNRKFDIE------------GIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       114 ~~~------~~--~~~~~~-~~d~~~~~~l~~~~~v~------------~~P~~~lid~~~~dG~i~~~~  162 (428)
                      |.+      +.  ++ .+| +.|.+  ..+++.|++.            .+|+++|||+   +|+|+...
T Consensus        80 ~~~~i~~~~~~~~~~-~fpil~D~~--~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~---~G~I~~~~  143 (233)
T 2v2g_A           80 WSEDVKCLSGVKGDM-PYPIIADET--RELAVKLGMVDPDERTSTGMPLTCRAVFIIGP---DKKLKLSI  143 (233)
T ss_dssp             HHHHHHHHHTCCSSC-SSCEEECTT--CHHHHHTTCEEEEEECTTCCEEECEEEEEECT---TSBEEEEE
T ss_pred             HHHHHHHhhCcccCC-ceEEEECCh--HHHHHHhCCcCcccccCCCcccccceEEEECC---CCEEEEEE
Confidence            665      34  32 222 22433  6899999984            5899999999   99998664

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=99.67  E-value=1.1e-16  Score=146.94  Aligned_cols=116  Identities=15%  Similarity=0.234  Sum_probs=93.8

Q ss_pred             cccccccCc-cccCCCCEEecccCCCC--EEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHH
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSDLEGK--VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNN  113 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~  113 (428)
                      .+|+.+|+| +.+.+| ++++++++||  +||++||++||++|..++|.|++++++|++.|  +++|+||+|.. +..++
T Consensus         6 ~~G~~aP~F~l~~~~G-~v~l~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~--v~vi~IS~D~~-~~~~~   81 (224)
T 1prx_A            6 LLGDVAPNFEANTTVG-RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRN--VKLIALSIDSV-EDHLA   81 (224)
T ss_dssp             CTTCBCCCCEEEETTE-EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTT--EEEEEEESSCH-HHHHH
T ss_pred             CCcCCCCCcEEecCCC-CEEHHHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHCC--CEEEEEcCCCH-HHHHH
Confidence            368999999 999999 9999999998  67777899999999999999999999999887  99999999864 33455


Q ss_pred             HHhc----------CCCceec-cCChHHHHHHHhhcCCC------------CCceEEEEcCCCCCCCccccc
Q 014225          114 YRAC----------MPWLAVP-YSDLETKKALNRKFDIE------------GIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       114 ~~~~----------~~~~~~~-~~d~~~~~~l~~~~~v~------------~~P~~~lid~~~~dG~i~~~~  162 (428)
                      +.+.          .++ .+| +.|.+  ..+++.|++.            .+|+++|||+   +|+|+...
T Consensus        82 ~~~~i~~~~~~~~~~~~-~fpil~D~~--~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~---~G~I~~~~  147 (224)
T 1prx_A           82 WSKDINAYNSEEPTEKL-PFPIIDDRN--RELAILLGMLDPAEKDEKGMPVTARVVFVFGP---DKKLKLSI  147 (224)
T ss_dssp             HHHHHHHHTTSCCCSCC-SSCEEECTT--CHHHHHTTSSCSCTTCSSSCCTTCCEEEEECT---TSBEEEEE
T ss_pred             HHHHHHHhhCcccccCc-CcceeecCc--hHHHHHhCCCCcccccCCCccccceEEEEECC---CCEEEEEE
Confidence            5543          332 222 22433  6789999973            4799999999   99998664

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=99.65  E-value=1.3e-16  Score=145.99  Aligned_cols=116  Identities=14%  Similarity=0.264  Sum_probs=93.0

Q ss_pred             cccccccCc-cccC--CCCEEecccCCCC--EEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHH
Q 014225           37 LLASKDRDY-LLNQ--HGTQVKVSDLEGK--VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAF  111 (428)
Q Consensus        37 ~~g~~~pdf-l~~~--~G~~v~l~~~~gk--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~  111 (428)
                      .+|+.+|+| +.+.  +| ++++++++||  +||++||++||++|..++|.|++++++|++++  +++|+||+|... ..
T Consensus         4 ~iG~~aP~F~l~~~~~~G-~v~l~d~~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~--v~vi~vS~D~~~-~~   79 (220)
T 1xcc_A            4 HLGATFPNFTAKASGIDG-DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLN--CKLIGFSCNSKE-SH   79 (220)
T ss_dssp             CTTCBCCCCEECBTTCSS-CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTT--EEEEEEESSCHH-HH
T ss_pred             CCCCCCCCcEeecccCCC-cEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHcC--CEEEEEeCCCHH-HH
Confidence            468999999 9999  99 8999999998  66667799999999999999999999999887  999999998643 34


Q ss_pred             HHHHh-------cCCCceec-cCChHHHHHHHhhcCCC------------CCceEEEEcCCCCCCCccccc
Q 014225          112 NNYRA-------CMPWLAVP-YSDLETKKALNRKFDIE------------GIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       112 ~~~~~-------~~~~~~~~-~~d~~~~~~l~~~~~v~------------~~P~~~lid~~~~dG~i~~~~  162 (428)
                      +++.+       +.++ .+| +.|.+  ..+++.|++.            .+|+++|||+   +|+|+...
T Consensus        80 ~~~~~~i~~~~~~~~~-~fpil~D~~--~~va~~ygv~~~~~~~~~g~~~~~p~~flID~---~G~I~~~~  144 (220)
T 1xcc_A           80 DKWIEDIKYYGKLNKW-EIPIVCDES--RELANKLKIMDEQEKDITGLPLTCRCLFFISP---EKKIKATV  144 (220)
T ss_dssp             HHHHHHHHHHHTCSCC-CCCEEECTT--SHHHHHHTCEEEEEECTTSCEEECEEEEEECT---TSBEEEEE
T ss_pred             HHHHHHHHHHhcCCCC-cceeEECch--hHHHHHhCCCCcccccCCCCCcccceEEEECC---CCEEEEEE
Confidence            44444       3332 222 22433  6889999983            4799999999   99998764

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=99.65  E-value=2.4e-16  Score=143.46  Aligned_cols=116  Identities=7%  Similarity=0.126  Sum_probs=95.4

Q ss_pred             cccccccCc-cccCCCCEEecccCCCCEEEEEEecCC-Chhhh-----hhHHHHHHHHHHHhcCCCcEEEEEEecCCChH
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANW-YPPCG-----NFTGVLVDVYEELRNNGSDFEVVFVSSDEDLN  109 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~w-C~~C~-----~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~  109 (428)
                      .+|+.+||| |.+.+|++++|++++||+++|+||++| ||+|.     .+++.|+++   |  .|  ++|++||.|. ..
T Consensus        23 ~vG~~APdFtL~d~~G~~vsLsd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~--~g--v~VvgIS~Ds-~~   94 (224)
T 3keb_A           23 RKGDYLPSFMLVDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W--PH--LKLIVITVDS-PS   94 (224)
T ss_dssp             CTTCBCCCCEEEETTSCEEEGGGGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C--TT--SEEEEEESSC-HH
T ss_pred             CCCCCCCCeEEECCCCCEEeHHHhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c--CC--CEEEEEECCC-HH
Confidence            469999999 999999999999999999999999998 99999     889988887   4  44  8999999984 56


Q ss_pred             HHHHHHhcCCCceec-cCChHHHHHHHhhcCCCC---------CceEEEEcCCCCCCCcccccch
Q 014225          110 AFNNYRACMPWLAVP-YSDLETKKALNRKFDIEG---------IPCLVVLQPYDDKDDATLHDGV  164 (428)
Q Consensus       110 ~~~~~~~~~~~~~~~-~~d~~~~~~l~~~~~v~~---------~P~~~lid~~~~dG~i~~~~~~  164 (428)
                      ..++|.+++++..++ .+|.. ...+++.||+..         +|++||||+   +|+|++....
T Consensus        95 ~~~~f~~~~gl~~fplLsD~~-~~~vak~yGv~~~~~~~~G~~~p~tfvID~---dG~I~~~~~~  155 (224)
T 3keb_A           95 SLARARHEHGLPNIALLSTLR-GRDFHKRYGVLITEYPLSGYTSPAIILADA---ANVVHYSERL  155 (224)
T ss_dssp             HHHHHHHHHCCTTCEEEESTT-CTTHHHHTTCBCCSTTSTTCBCCEEEEECT---TCBEEEEEEC
T ss_pred             HHHHHHHHcCCCCceEEEcCC-chHHHHHhCCccccccccCCccCEEEEEcC---CCEEEEEEec
Confidence            688888877652222 33431 168999999864         799999999   9999977543

>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3

Probab=99.63  E-value=9.7e-17  Score=124.06  Aligned_cols=80  Identities=34%  Similarity=0.686  Sum_probs=73.0

Q ss_pred             cccCCCCChHHHHHHHHHHHHHHhcCCCCcccccc-ccceeeeeccCCCCCcccccccCCCCceeEeccCCCCCCccccc
Q 014225          339 QENAYPFTEAKLEFLEKQMEEEAKNLPRSEFHIGH-RHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLECGYEVHPKCV  417 (428)
Q Consensus       339 g~~~~p~~~~~~~~L~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~c~~C~~~g~~~~~~~~~~~~~~~~~~~  417 (428)
                      |+++||||++.+.+|.+.+.+.-+..|..+.+..| +|.|.|..    ..+++|+.|++.+.+|.|+|..|+|+||+.||
T Consensus         1 ~~~a~pfte~~~~~~~~~lhe~Ca~lP~~i~Hp~Hp~H~L~L~~----~~~~~C~~C~~~~~~~~Y~C~~C~f~lH~~Ca   76 (89)
T 1v5n_A            1 GSSGSSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTR----VQVYTCDKCEEEGTIWSYHCDECDFDLHAKCA   76 (89)
T ss_dssp             CCCCCCCCSSCCSHHHHHHHHHTSSSCSEECCSTTTTSCEEEEC----CSSCCCTTTSCCCCSCEEECTTTCCCCCHHHH
T ss_pred             CCcccccCHHHHHHHHHHHhHHHHcCCceecCCCCCCCccEEee----CCCeEeCCCCCcCCCcEEEcCCCCCeEcHHhc
Confidence            67899999999999999999999999999999999 59999954    34799999999999999999999999999999


Q ss_pred             cccCC
Q 014225          418 RAVDR  422 (428)
Q Consensus       418 ~~~~~  422 (428)
                      .....
T Consensus        77 ~~p~~   81 (89)
T 1v5n_A           77 LNEDT   81 (89)
T ss_dssp             HCSSC
T ss_pred             CCCCc
Confidence            87554

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.63  E-value=5.9e-15  Score=137.15  Aligned_cols=70  Identities=21%  Similarity=0.385  Sum_probs=61.1

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+++++|+|||+||++|+.+.|.+.++++++++.+.++.++.|+++.+..                      ..+++.|+
T Consensus        29 ~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~----------------------~~l~~~~~   86 (244)
T 3q6o_A           29 SRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETN----------------------SAVCRDFN   86 (244)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTT----------------------HHHHHHTT
T ss_pred             CCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhh----------------------HHHHHHcC
Confidence            35899999999999999999999999999998743349999988765433                      78999999


Q ss_pred             CCCCceEEEEcC
Q 014225          140 IEGIPCLVVLQP  151 (428)
Q Consensus       140 v~~~P~~~lid~  151 (428)
                      |.++|+++++++
T Consensus        87 v~~~Pt~~~~~~   98 (244)
T 3q6o_A           87 IPGFPTVRFFXA   98 (244)
T ss_dssp             CCSSSEEEEECT
T ss_pred             CCccCEEEEEeC
Confidence            999999999996

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=99.63  E-value=3.8e-16  Score=145.14  Aligned_cols=116  Identities=15%  Similarity=0.309  Sum_probs=93.2

Q ss_pred             cccccccCc-cccCCCCEEec-ccC--CCCE-EEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHH
Q 014225           37 LLASKDRDY-LLNQHGTQVKV-SDL--EGKV-TALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAF  111 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l-~~~--~gk~-vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~  111 (428)
                      .+|+.+||| +.+.+| ++++ +++  +||. ||++||++||++|..++|.|++++++|+++|  +++|+||+|... ..
T Consensus         6 ~iG~~aPdF~l~~~~G-~v~l~~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~g--v~VI~VS~Ds~~-~~   81 (249)
T 3a2v_A            6 LIGERFPEMEVTTDHG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLG--VDLIGLSVDSVF-SH   81 (249)
T ss_dssp             CTTSBCCCEEEEETTE-EEEETHHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTT--EEEEEEESSCHH-HH
T ss_pred             CCCCCCCCeEEEcCCC-CEecHHHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCC--cEEEEEECCCHH-HH
Confidence            579999999 999999 7999 999  9995 5668899999999999999999999999987  999999998643 23


Q ss_pred             HHHHhc------CCCceec-cCChHHHHHHHhhcCCC-------CCceEEEEcCCCCCCCccccc
Q 014225          112 NNYRAC------MPWLAVP-YSDLETKKALNRKFDIE-------GIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       112 ~~~~~~------~~~~~~~-~~d~~~~~~l~~~~~v~-------~~P~~~lid~~~~dG~i~~~~  162 (428)
                      .++.+.      .++ .+| ++|.+  ..+++.|++.       .+|+++|||+   +|+++...
T Consensus        82 ~~w~~~~~~~~~~~i-~fPil~D~~--~~ia~~ygv~~~~~g~~~~p~~fIID~---dG~I~~~~  140 (249)
T 3a2v_A           82 IKWKEWIERHIGVRI-PFPIIADPQ--GTVARRLGLLHAESATHTVRGVFIVDA---RGVIRTML  140 (249)
T ss_dssp             HHHHHHHHHHTCCCC-CSCEEECTT--SHHHHHHTCCCTTCSSSCCEEEEEECT---TSBEEEEE
T ss_pred             HHHHHHHHHhcCCCC-ceeEEECCc--hHHHHHhCCccccCCCcccceEEEECC---CCeEEEEE
Confidence            333331      222 122 22433  7899999987       8999999999   99998663

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.62  E-value=1.1e-15  Score=126.95  Aligned_cols=113  Identities=12%  Similarity=0.161  Sum_probs=85.7

Q ss_pred             CCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHH
Q 014225          205 HDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSF  283 (428)
Q Consensus       205 ~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~  283 (428)
                      ..++++. +.+|. .......+||+++|+||++||++|+.+.|.|.+++++++.          ++.++.|++|.+.   
T Consensus         5 ~~~~l~~~~~~~~-~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~----------~v~~~~v~~~~d~---   70 (126)
T 2l57_A            5 GIKQINFQSINVV-ENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREG----------KFNIYYARLEEEK---   70 (126)
T ss_dssp             CSSCTTTTCCSEE-SSTTTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSS----------SCEEEEEETTSSH---
T ss_pred             ccCCCCccccchh-HHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcC----------CeEEEEEeCCCCc---
Confidence            3455666 66665 4445667789999999999999999999999999988863          5899999944222   


Q ss_pred             HHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhc
Q 014225          284 ESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKN  363 (428)
Q Consensus       284 ~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~  363 (428)
                                        ..++++.|+|.++|+++++|++|+++.+..+           ..+   .++|.+.|++.+..
T Consensus        71 ------------------~~~~~~~~~v~~~Pt~~~~~~~G~~~~~~~G-----------~~~---~~~l~~~l~~~~~~  118 (126)
T 2l57_A           71 ------------------NIDLAYKYDANIVPTTVFLDKEGNKFYVHQG-----------LMR---KNNIETILNSLGVK  118 (126)
T ss_dssp             ------------------HHHHHHHTTCCSSSEEEEECTTCCEEEEEES-----------CCC---HHHHHHHHHHHCCC
T ss_pred             ------------------hHHHHHHcCCcceeEEEEECCCCCEEEEecC-----------CCC---HHHHHHHHHHHhcc
Confidence                              3678999999999999999999999876432           122   25566777666543

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.62  E-value=1.8e-15  Score=121.82  Aligned_cols=74  Identities=23%  Similarity=0.462  Sum_probs=64.2

Q ss_pred             ccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcch
Q 014225          223 SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI  302 (428)
Q Consensus       223 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~  302 (428)
                      +..+|+|+|+|||+||++|+.+.|.+.++++.+.           ++.++.|++|..                       
T Consensus        17 ~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~-----------~~~~~~vd~d~~-----------------------   62 (105)
T 3zzx_A           17 EAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMS-----------DVVFLKVDVDEC-----------------------   62 (105)
T ss_dssp             HTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TEEEEEEETTTC-----------------------
T ss_pred             hcCCCEEEEEEECCCCCCccCCCcchhhhhhccC-----------CeEEEEEecccC-----------------------
Confidence            3457899999999999999999999999988764           578888888755                       


Q ss_pred             hHHHHhcCcCccceEEEECCCCcEEeccc
Q 014225          303 KELTKYFDVQGIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       303 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~  331 (428)
                      .++++.|+|.++||++++ ++|+++.+..
T Consensus        63 ~~l~~~~~V~~~PT~~~~-~~G~~v~~~~   90 (105)
T 3zzx_A           63 EDIAQDNQIACMPTFLFM-KNGQKLDSLS   90 (105)
T ss_dssp             HHHHHHTTCCBSSEEEEE-ETTEEEEEEE
T ss_pred             HHHHHHcCCCeecEEEEE-ECCEEEEEEe
Confidence            679999999999999998 8999998743

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.62  E-value=1.7e-15  Score=128.27  Aligned_cols=84  Identities=23%  Similarity=0.386  Sum_probs=75.7

Q ss_pred             CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCC
Q 014225          212 GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMP  291 (428)
Q Consensus       212 ~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~  291 (428)
                      +.+|. ...++.++|++++|+||++||++|+.+.|.|.+++++++++          +.++.|++|.+            
T Consensus        38 ~~~~~-~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~------------   94 (141)
T 3hxs_A           38 DYENH-SKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGK----------IYIYKVNVDKE------------   94 (141)
T ss_dssp             CCSSC-CCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT----------CEEEEEETTTC------------
T ss_pred             ccccc-hhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCc----------eEEEEEECCCC------------
Confidence            77788 88999999999999999999999999999999999988754          88999998865            


Q ss_pred             ccccccCCcchhHHHHhcCcCccceEEEECCCCcEEec
Q 014225          292 WLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK  329 (428)
Q Consensus       292 ~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~  329 (428)
                                 .++++.|+|.++|+++++|++|+++..
T Consensus        95 -----------~~~~~~~~v~~~Pt~~~~~~~g~~~~~  121 (141)
T 3hxs_A           95 -----------PELARDFGIQSIPTIWFVPMKGEPQVN  121 (141)
T ss_dssp             -----------HHHHHHTTCCSSSEEEEECSSSCCEEE
T ss_pred             -----------HHHHHHcCCCCcCEEEEEeCCCCEEEE
Confidence                       678999999999999999999998743

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.59  E-value=7.1e-15  Score=122.51  Aligned_cols=93  Identities=14%  Similarity=0.363  Sum_probs=76.1

Q ss_pred             ccCCCCcccCCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHH
Q 014225          203 TNHDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTS  282 (428)
Q Consensus       203 g~~~p~f~l~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~  282 (428)
                      ..+.|++. ..++. .+.....+||+++|+||++||++|+++.|.|.+++++++++          +.++.|++|.+   
T Consensus        21 ~~~~~~~~-~~~~~-~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~----------v~~~~vd~d~~---   85 (128)
T 3ul3_B           21 FKKVPRLQ-QNGSN-IINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKR----------IYLLKVDLDKN---   85 (128)
T ss_dssp             -----CCC-CCCCS-SSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG----------EEEEEEEGGGC---
T ss_pred             hccCCccc-cCCcc-HHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCC----------eEEEEEECCCC---
Confidence            34456665 55555 67777788999999999999999999999999999998754          89999998865   


Q ss_pred             HHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEeccc
Q 014225          283 FESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       283 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~  331 (428)
                                          ..+++.|+|.++|+++++ ++|+++.+..
T Consensus        86 --------------------~~l~~~~~v~~~Pt~~~~-~~G~~~~~~~  113 (128)
T 3ul3_B           86 --------------------ESLARKFSVKSLPTIILL-KNKTMLARKD  113 (128)
T ss_dssp             --------------------HHHHHHTTCCSSSEEEEE-ETTEEEEEES
T ss_pred             --------------------HHHHHHcCCCCcCEEEEE-ECCEEEEEec
Confidence                                678999999999999999 8999888753

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=99.59  E-value=2.2e-15  Score=136.22  Aligned_cols=120  Identities=14%  Similarity=0.247  Sum_probs=94.9

Q ss_pred             ccccccccccCc-cc---cCCCCEEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCCh
Q 014225           34 FSSLLASKDRDY-LL---NQHGTQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL  108 (428)
Q Consensus        34 ~~~~~g~~~pdf-l~---~~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~  108 (428)
                      +...+|++|||| +.   +.+|++++|++++||.|+|+|| +.||+.|..+++.+++.+++|++.|  +++++||.|...
T Consensus        21 M~~~VG~~APdF~l~a~~d~~~~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~g--~~vigiS~Ds~~   98 (216)
T 3sbc_A           21 MVAQVQKQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQG--AQVLFASTDSEY   98 (216)
T ss_dssp             -CCCTTSBCCCCCEEEEETTEEEEECGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHTT--EEEEEEESSCHH
T ss_pred             chhhcCCcCCCCCCcceECCCCcEEehHHhCCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccCC--ceEEEeecCchh
Confidence            334689999999 75   6677899999999999999999 9999999999999999999999998  999999998653


Q ss_pred             HHHHHHHhcC----C--Cceec-cCChHHHHHHHhhcCCC------CCceEEEEcCCCCCCCcccc
Q 014225          109 NAFNNYRACM----P--WLAVP-YSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       109 ~~~~~~~~~~----~--~~~~~-~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~dG~i~~~  161 (428)
                      . -+++.+..    +  -+.+| .+|.+  ..++++||+-      ..+++||||+   +|+|...
T Consensus        99 s-h~aw~~~~~~~~~~~~l~fpllsD~~--~~vak~YGv~~~~~g~~~R~tFiID~---~G~Ir~~  158 (216)
T 3sbc_A           99 S-LLAWTNIPRKEGGLGPINIPLLADTN--HSLSRDYGVLIEEEGVALRGLFIIDP---KGVIRHI  158 (216)
T ss_dssp             H-HHHHHTSCGGGTCCCSCSSCEEECTT--SHHHHHHTCEETTTTEECEEEEEECT---TSBEEEE
T ss_pred             h-HHHHHHHHHHhCCccCcccceEeCCC--CHHHHHcCCeeccCCceeeEEEEECC---CCeEEEE
Confidence            2 33444322    1  12233 22443  7999999983      4689999999   9988765

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.58  E-value=8.8e-16  Score=129.22  Aligned_cols=96  Identities=18%  Similarity=0.326  Sum_probs=76.8

Q ss_pred             hhccCCCCcc-c-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEE
Q 014225          201 LLTNHDRGYL-L-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVS  275 (428)
Q Consensus       201 ~~g~~~p~f~-l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~iv~is  275 (428)
                      ..+.++|+|. + +.++. ...+++.+||+++|+||++||++|+.+.|.+   .++.+.++           ++.++.|+
T Consensus         5 ~~~~~~~~f~~~~~~~~~-~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~-----------~~~~~~vd   72 (134)
T 2fwh_A            5 AQTQTHLNFTQIKTVDEL-NQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-----------DTVLLQAN   72 (134)
T ss_dssp             -----CCCCEECCSHHHH-HHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT-----------TSEEEEEE
T ss_pred             cccccCCCcEEecCHHHH-HHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc-----------CcEEEEEe
Confidence            3477888998 5 66666 6778888899999999999999999999988   78877764           47899998


Q ss_pred             cCCCHHHHHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEE
Q 014225          276 TDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV  327 (428)
Q Consensus       276 ~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~  327 (428)
                      ++...                   +....+++.|+|.++|+++++|++|+++
T Consensus        73 ~~~~~-------------------~~~~~l~~~~~v~~~Pt~~~~d~~G~~v  105 (134)
T 2fwh_A           73 VTAND-------------------AQDVALLKHLNVLGLPTILFFDGQGQEH  105 (134)
T ss_dssp             CTTCC-------------------HHHHHHHHHTTCCSSSEEEEECTTSCBC
T ss_pred             CCCCc-------------------chHHHHHHHcCCCCCCEEEEECCCCCEe
Confidence            87531                   2347889999999999999999999997

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=99.58  E-value=1.9e-15  Score=132.42  Aligned_cols=119  Identities=13%  Similarity=0.144  Sum_probs=98.5

Q ss_pred             hccCCCCccc-CCCC---------Cceeccccc-CCcEEE-EEEeccCChhHHh-hhHHHHHHHHHHHhhhhhcCCCCCC
Q 014225          202 LTNHDRGYLL-GHPP---------DEKVPVSSL-VGKTVG-LYFSARWCIPCEK-FMPKLLSIYQKIKQNLVEKGDALED  268 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g---------~~~v~l~~~-~gk~vl-l~F~a~wC~~C~~-~~~~l~~l~~~~~~~~~~~~~~~~~  268 (428)
                      +|++.|+.++ ...+         -+.++++++ +||+++ ++||+.|||+|.. ++|.|++.+++|+++         +
T Consensus        12 ~~~~~p~~~~~~~~~~~~~~~~~~~~~vsLsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~---------g   82 (176)
T 4f82_A           12 VGDALPDAQLFEFIDDAREGCTLGPNACSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAA---------G   82 (176)
T ss_dssp             TTCBCCCCEEEEEECSCCTTCCSEEEEEEHHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHT---------T
T ss_pred             cCCcCCceEEEEecccccccccCCceEEeHHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhC---------C
Confidence            5889999776 2211         138999997 998654 5666999999999 999999999999987         8


Q ss_pred             E-EEEEEEcCCCHHHHHHHHhcCCcc-ccccCCcchhHHHHhcCcC-----------ccceEEEECCCCcEEeccc
Q 014225          269 F-EVVFVSTDRDQTSFESYFGTMPWL-ALPFGDPTIKELTKYFDVQ-----------GIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       269 ~-~iv~is~d~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~~  331 (428)
                      + +|++||+| +....++|.++.+.. +||++.|.+.++++.||+.           ..|++||| ++|+|++...
T Consensus        83 ~d~VigIS~D-~~~~~~~f~~~~~l~~~f~lLsD~~~~va~ayGv~~~~~~~G~g~~s~R~tfII-~dG~I~~~~~  156 (176)
T 4f82_A           83 IDEIWCVSVN-DAFVMGAWGRDLHTAGKVRMMADGSAAFTHALGLTQDLSARGMGIRSLRYAMVI-DGGVVKTLAV  156 (176)
T ss_dssp             CCEEEEEESS-CHHHHHHHHHHTTCTTTSEEEECTTCHHHHHHTCEEECGGGTCCEEECCEEEEE-ETTEEEEEEE
T ss_pred             CCEEEEEeCC-CHHHHHHHHHHhCCCCCceEEEcCchHHHHHhCCCccccccCCCcccccEEEEE-cCCEEEEEEE
Confidence            9 99999999 677888888887733 4999999999999999983           24889999 9999998853

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.58  E-value=2.1e-15  Score=139.28  Aligned_cols=139  Identities=21%  Similarity=0.281  Sum_probs=96.5

Q ss_pred             CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCC
Q 014225          212 GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMP  291 (428)
Q Consensus       212 ~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~  291 (428)
                      ..++. .+.....+|++++|+||++||++|+.+.|.|.++++++++.       +.++.++.|+++.+            
T Consensus        19 ~l~~~-~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~-------~~~~~~~~vd~~~~------------   78 (241)
T 3idv_A           19 VLNDA-NFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDK-------DPPIPVAKIDATSA------------   78 (241)
T ss_dssp             EECTT-THHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTS-------SSCCCEEEEETTTC------------
T ss_pred             Eeccc-CHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhc-------CCceEEEEEeccCC------------
Confidence            34444 44443456899999999999999999999999999999865       34588888888755            


Q ss_pred             ccccccCCcchhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhcCCCC----
Q 014225          292 WLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPRS----  367 (428)
Q Consensus       292 ~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~~~~----  367 (428)
                                 ..+++.|+|.++||++++ ++|+++...|.            .+   .++|.+.+++.+......    
T Consensus        79 -----------~~l~~~~~v~~~Pt~~~~-~~g~~~~~~g~------------~~---~~~l~~~i~~~~~~~~~~~~~~  131 (241)
T 3idv_A           79 -----------SVLASRFDVSGYPTIKIL-KKGQAVDYEGS------------RT---QEEIVAKVREVSQPDWTPPPEV  131 (241)
T ss_dssp             -----------HHHHHHTTCCSSSEEEEE-ETTEEEECCSC------------SC---HHHHHHHHHHHHSTTCCCCCCS
T ss_pred             -----------HHHHHhcCCCcCCEEEEE-cCCCcccccCc------------cc---HHHHHHHHhhccCccccccccc
Confidence                       679999999999999999 56776643321            22   255667777666532111    


Q ss_pred             ccccc--------cccceeeeeccCCCCCcccccccCCCCce
Q 014225          368 EFHIG--------HRHELNLVSEGTGGGPFICCDCDEQGSGW  401 (428)
Q Consensus       368 ~~~~~--------~~~~~~~~~~~~~~~~~~c~~C~~~g~~~  401 (428)
                      .....        ..+...+    ..+.++||++|+.+.+.|
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~----v~f~a~wC~~C~~~~p~~  169 (241)
T 3idv_A          132 TLVLTKENFDEVVNDADIIL----VEFYAPWCGHCKKLAPEY  169 (241)
T ss_dssp             SEECCTTTHHHHHHHCSEEE----EEEECTTCTGGGGTHHHH
T ss_pred             ceeccHHHHHHhhccCCeEE----EEEECCCCHHHHHhHHHH
Confidence            10000        1233344    456799999999875543

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.56  E-value=1.6e-14  Score=123.44  Aligned_cols=115  Identities=17%  Similarity=0.280  Sum_probs=89.8

Q ss_pred             ccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHH
Q 014225          203 TNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQT  281 (428)
Q Consensus       203 g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~  281 (428)
                      +.+.++..+ +.++. .+......+++++|+||++||++|+.+.|.|+++++++..+          +.++.|++|.+  
T Consensus        32 ~~~~~~~~v~~l~~~-~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~----------~~~~~vd~~~~--   98 (148)
T 3p2a_A           32 GHSLFDGEVINATAE-TLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGK----------VRFVKVNTEAE--   98 (148)
T ss_dssp             CCBTTCCCCEECCTT-THHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTT----------CEEEEEETTTC--
T ss_pred             CCccccCCceecCHH-HHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCc----------eEEEEEECcCC--
Confidence            445566666 77777 65544467899999999999999999999999999988644          88999988865  


Q ss_pred             HHHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHH
Q 014225          282 SFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEA  361 (428)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~  361 (428)
                                           ..+++.|+|.++|+++++ ++|+++.+..+.           .+   .++|.+.|++++
T Consensus        99 ---------------------~~l~~~~~v~~~Pt~~~~-~~G~~~~~~~G~-----------~~---~~~l~~~l~~~l  142 (148)
T 3p2a_A           99 ---------------------PALSTRFRIRSIPTIMLY-RNGKMIDMLNGA-----------VP---KAPFDNWLDEQL  142 (148)
T ss_dssp             ---------------------HHHHHHTTCCSSSEEEEE-ETTEEEEEESSC-----------CC---HHHHHHHHHHHH
T ss_pred             ---------------------HHHHHHCCCCccCEEEEE-ECCeEEEEEeCC-----------CC---HHHHHHHHHHHh
Confidence                                 678999999999999999 799988764331           22   366777788877


Q ss_pred             hcCCC
Q 014225          362 KNLPR  366 (428)
Q Consensus       362 ~~~~~  366 (428)
                      ...+.
T Consensus       143 ~~~~~  147 (148)
T 3p2a_A          143 SRDPN  147 (148)
T ss_dssp             HSCC-
T ss_pred             cccCC
Confidence            76543

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.56  E-value=3.3e-14  Score=145.78  Aligned_cols=84  Identities=20%  Similarity=0.350  Sum_probs=67.0

Q ss_pred             cccCCCCEEecccC-CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceec
Q 014225           46 LLNQHGTQVKVSDL-EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVP  124 (428)
Q Consensus        46 l~~~~G~~v~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~  124 (428)
                      +...+++++..... .+++++|+|||+||++|+.++|.+.++++++++.+..+.++.|++|.+..               
T Consensus        14 V~~Lt~~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~---------------   78 (519)
T 3t58_A           14 LTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETN---------------   78 (519)
T ss_dssp             SEEECTTTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGG---------------
T ss_pred             cEECChHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCcccc---------------
Confidence            34444444433333 35899999999999999999999999999998843348999988765433               


Q ss_pred             cCChHHHHHHHhhcCCCCCceEEEEcC
Q 014225          125 YSDLETKKALNRKFDIEGIPCLVVLQP  151 (428)
Q Consensus       125 ~~d~~~~~~l~~~~~v~~~P~~~lid~  151 (428)
                             ..+++.|+|.++|+++++++
T Consensus        79 -------~~l~~~~~V~~~PTl~~f~~   98 (519)
T 3t58_A           79 -------SAVCREFNIAGFPTVRFFQA   98 (519)
T ss_dssp             -------HHHHHHTTCCSBSEEEEECT
T ss_pred             -------HHHHHHcCCcccCEEEEEcC
Confidence                   78999999999999999995

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.56  E-value=1.3e-14  Score=123.42  Aligned_cols=69  Identities=13%  Similarity=0.204  Sum_probs=62.5

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++|||+|||+||+||+.+.|.|.++++++.++          +.|+.|++|..                       .+
T Consensus        40 ~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~----------v~f~kVDVDe~-----------------------~e   86 (160)
T 2av4_A           40 DERLVCIRFGHDYDPDCMKMDELLYKVADDIKNF----------CVIYLVDITEV-----------------------PD   86 (160)
T ss_dssp             SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT----------EEEEEEETTTC-----------------------CT
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCC----------cEEEEEECCCC-----------------------HH
Confidence            3589999999999999999999999999999754          78999999866                       67


Q ss_pred             HHHhcCcCccceEEEECCCCcEE
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTV  327 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~  327 (428)
                      ++..|+|.++||++++ ++|+.+
T Consensus        87 ~a~~y~V~siPT~~fF-k~G~~v  108 (160)
T 2av4_A           87 FNTMYELYDPVSVMFF-YRNKHM  108 (160)
T ss_dssp             TTTTTTCCSSEEEEEE-ETTEEE
T ss_pred             HHHHcCCCCCCEEEEE-ECCEEE
Confidence            8999999999999999 888887

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.55  E-value=6.3e-15  Score=127.13  Aligned_cols=113  Identities=20%  Similarity=0.316  Sum_probs=83.0

Q ss_pred             CCCceecccccCCcEEEEEEe-ccCChhHHhhhHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhc
Q 014225          214 PPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGT  289 (428)
Q Consensus       214 ~g~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~  289 (428)
                      .++ .+.++..+||+++|+|| ++||++|+.+.|.|   .++.+.+..          ++.++.|+++....        
T Consensus        36 ~~~-~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~----------~~~~v~vd~~~~~~--------   96 (154)
T 2ju5_A           36 YAE-ALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGV----------HLHMVEVDFPQKNH--------   96 (154)
T ss_dssp             HHH-HHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHH----------HCEEEEEECCSSCC--------
T ss_pred             HHH-HHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcC----------cEEEEEecCccccC--------
Confidence            344 66777788999999999 99999999999999   677655543          47888888875420        


Q ss_pred             CCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHh
Q 014225          290 MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAK  362 (428)
Q Consensus       290 ~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~  362 (428)
                         +.++. .+....+++.|+|.++|+++|||++|+++.+. +.       .     +...+++.+.|+++++
T Consensus        97 ---~~~~~-~~~~~~l~~~~~v~~~Pt~~~~d~~G~~~~~~-G~-------~-----~~~~~~l~~~l~~~l~  152 (154)
T 2ju5_A           97 ---QPEEQ-RQKNQELKAQYKVTGFPELVFIDAEGKQLARM-GF-------E-----PGGGAAYVSKVKSALK  152 (154)
T ss_dssp             ---CCHHH-HHHHHHHHHHTTCCSSSEEEEECTTCCEEEEE-CC-------C-----TTCHHHHHHHHHHHHT
T ss_pred             ---CChhh-HhhHHHHHHHcCCCCCCEEEEEcCCCCEEEEe-cC-------C-----CCCHHHHHHHHHHHHh
Confidence               11221 24457899999999999999999999999874 21       1     1123566777777665

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.54  E-value=3.6e-14  Score=118.82  Aligned_cols=79  Identities=27%  Similarity=0.426  Sum_probs=67.8

Q ss_pred             cCCcEEEEEEeccCChhHHhhhHHHH--HHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcc
Q 014225          224 LVGKTVGLYFSARWCIPCEKFMPKLL--SIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT  301 (428)
Q Consensus       224 ~~gk~vll~F~a~wC~~C~~~~~~l~--~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~  301 (428)
                      ..||+++|+||++||++|+.+.|.|.  ++.+.++..          +.++.|+++..                    +.
T Consensus        27 ~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~----------~~~~~vd~~~~--------------------~~   76 (133)
T 3fk8_A           27 RTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKH----------FEVVKIDVGNF--------------------DR   76 (133)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHH----------CEEEEEECTTT--------------------TS
T ss_pred             hcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCC----------EEEEEEeCCcc--------------------cc
Confidence            35889999999999999999999999  999988755          88999998421                    12


Q ss_pred             hhHHHHhcCc---CccceEEEECCCCcEEecccc
Q 014225          302 IKELTKYFDV---QGIPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       302 ~~~~~~~~~v---~~~P~~~lid~~G~i~~~~~~  332 (428)
                      ..++++.|+|   .++|+++++|++|+++.+..+
T Consensus        77 ~~~l~~~~~v~~~~~~Pt~~~~d~~G~~~~~~~g  110 (133)
T 3fk8_A           77 NLELSQAYGDPIQDGIPAVVVVNSDGKVRYTTKG  110 (133)
T ss_dssp             SHHHHHHTTCGGGGCSSEEEEECTTSCEEEECCS
T ss_pred             hHHHHHHhCCccCCccceEEEECCCCCEEEEecC
Confidence            3789999999   999999999999999988655

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}

Probab=99.53  E-value=8.3e-15  Score=128.11  Aligned_cols=118  Identities=14%  Similarity=0.254  Sum_probs=99.9

Q ss_pred             hhccCCCCccc-CCCC-Cceecccc-cCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEE-EEEEE
Q 014225          201 LLTNHDRGYLL-GHPP-DEKVPVSS-LVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFE-VVFVS  275 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g-~~~v~l~~-~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~-iv~is  275 (428)
                      .+|+++|+|++ +..+ + .+++++ ++||++||+|| ..|||.|..+++.+++.+.+|++.         +++ |++||
T Consensus        15 ~vGd~aPdf~l~~~g~~~-~v~L~d~~~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~---------gv~~VigIS   84 (171)
T 2xhf_A           15 KVGDIIPDVLVYEDVPSK-SFPIHDVFRGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEE---------GYHTIACIA   84 (171)
T ss_dssp             CTTCBCCCCEEECSSTTC-EEETHHHHTTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHT---------TCCEEEEEE
T ss_pred             cCcCCCCCeEEecCCCCc-EEEhHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC---------CCCEEEEEe
Confidence            46999999999 5442 7 999999 59999999999 579999999999999999999987         885 99999


Q ss_pred             cCCCHHHHHHHHhcCCc-cccccCCcchhHHHHhcCcC-----------ccceEEEECCCCcEEecc
Q 014225          276 TDRDQTSFESYFGTMPW-LALPFGDPTIKELTKYFDVQ-----------GIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       276 ~d~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~  330 (428)
                      +| +....++|..+.+. .+||++.|.+.++++.||+.           ....+|||| +|+|++..
T Consensus        85 ~D-~~~~~~~w~~~~~~~~~f~lLSD~~~~~a~ayGv~~~~~~~g~g~~~~R~tfvId-dG~V~~~~  149 (171)
T 2xhf_A           85 VN-DPFVMAAWGKTVDPEHKIRMLADMHGEFTRALGTELDSSKMLGNNRSRRYAMLID-DNKIRSVS  149 (171)
T ss_dssp             SS-CHHHHHHHHHHHCTTCCSEEEECTTSHHHHHHTCBCCCHHHHSSCCBCCEEEEEE-TTEEEEEE
T ss_pred             CC-CHHHHHHHHHhcCCCCCeEEEEeCCchHHHHhCCceeccccCCCcceEEEEEEEe-CCEEEEEE
Confidence            99 66677777776552 27999999999999999983           246789998 99999875

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.53  E-value=1.6e-14  Score=122.13  Aligned_cols=84  Identities=21%  Similarity=0.389  Sum_probs=75.7

Q ss_pred             cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceecc
Q 014225           46 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPY  125 (428)
Q Consensus        46 l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~  125 (428)
                      +.+.+|..+.++.++||+++|+||++||++|+.+.|.|.+++++++++   +.++.|++|..                  
T Consensus        36 l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~------------------   94 (141)
T 3hxs_A           36 IADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGK---IYIYKVNVDKE------------------   94 (141)
T ss_dssp             TCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT---CEEEEEETTTC------------------
T ss_pred             hhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCc---eEEEEEECCCC------------------
Confidence            678899999999999999999999999999999999999999999764   88888877654                  


Q ss_pred             CChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcc
Q 014225          126 SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDAT  159 (428)
Q Consensus       126 ~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~  159 (428)
                            ..+++.|++.++|+++++++   +|+++
T Consensus        95 ------~~~~~~~~v~~~Pt~~~~~~---~g~~~  119 (141)
T 3hxs_A           95 ------PELARDFGIQSIPTIWFVPM---KGEPQ  119 (141)
T ss_dssp             ------HHHHHHTTCCSSSEEEEECS---SSCCE
T ss_pred             ------HHHHHHcCCCCcCEEEEEeC---CCCEE
Confidence                  67889999999999999998   88775

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=99.52  E-value=4.1e-14  Score=136.69  Aligned_cols=110  Identities=18%  Similarity=0.200  Sum_probs=89.4

Q ss_pred             ccccCc-cccCCCCEEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhc
Q 014225           40 SKDRDY-LLNQHGTQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRAC  117 (428)
Q Consensus        40 ~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~  117 (428)
                      +++|+| |.+.+|++++|++++||+|+|+|| +.|||.|..+++.+++    ....  +++|++||.|. ....++|.++
T Consensus         2 ak~p~F~l~~~~G~~~~Lsd~~Gk~vvl~F~p~~~tp~C~~e~~~~~~----~~~~--~~~v~gis~D~-~~~~~~f~~~   74 (322)
T 4eo3_A            2 ARVKHFELLTDEGKTFTHVDLYGKYTILFFFPKAGTSGSTREAVEFSR----ENFE--KAQVVGISRDS-VEALKRFKEK   74 (322)
T ss_dssp             CBCCCCEEEETTSCEEEGGGTTTSEEEEEECSSTTSHHHHHHHHHHHH----SCCT--TEEEEEEESCC-HHHHHHHHHH
T ss_pred             CCCCCcEEECCCcCEEeHHHhCCCeEEEEEECCCCCCCCHHHHHHHHH----HhhC--CCEEEEEeCCC-HHHHHHHHHh
Confidence            468999 999999999999999999999999 6899999999988754    1223  49999999974 5567888887


Q ss_pred             CCCceeccCChHHHHHHHhhcCC----CCCceEEEEcCCCCCCCcccc
Q 014225          118 MPWLAVPYSDLETKKALNRKFDI----EGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       118 ~~~~~~~~~d~~~~~~l~~~~~v----~~~P~~~lid~~~~dG~i~~~  161 (428)
                      ++..+...+|.+  ..+++.||+    ..+|++||||+   +|+|+..
T Consensus        75 ~~l~fp~l~D~~--~~v~~~ygv~~~~~~~r~tfiId~---~G~i~~~  117 (322)
T 4eo3_A           75 NDLKVTLLSDPE--GILHEFFNVLENGKTVRSTFLIDR---WGFVRKE  117 (322)
T ss_dssp             HTCCSEEEECTT--CHHHHHTTCEETTEECCEEEEECT---TSBEEEE
T ss_pred             hCCceEEEEcCc--hHHHHhcCCCCCCcCccEEEEECC---CCEEEEE
Confidence            765333344554  799999998    45899999999   9999754

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.52  E-value=6.8e-14  Score=117.80  Aligned_cols=93  Identities=26%  Similarity=0.431  Sum_probs=75.1

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+||++||++|+.+.|.|.+++++++++          +.++.|++|.+                       .+
T Consensus        37 ~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~----------v~~~~vd~~~~-----------------------~~   83 (136)
T 2l5l_A           37 GDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQ----------IVIYKVDTEKE-----------------------QE   83 (136)
T ss_dssp             CSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTT----------CEEEEEETTTC-----------------------HH
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCC----------EEEEEEeCCCC-----------------------HH
Confidence            4689999999999999999999999999988643          88999998865                       57


Q ss_pred             HHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhcCC
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLP  365 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~~  365 (428)
                      +++.|+|.++|+++++|++|+++...|.            .+   .++|.+.|++.+...+
T Consensus        84 l~~~~~v~~~Pt~~~~~~~G~~~~~~G~------------~~---~~~l~~~l~~~~~~~~  129 (136)
T 2l5l_A           84 LAGAFGIRSIPSILFIPMEGKPEMAQGA------------MP---KASFKKAIDEFLLKKE  129 (136)
T ss_dssp             HHHHTTCCSSCEEEEECSSSCCEEEESC------------CC---HHHHHHHHHHHHTSCT
T ss_pred             HHHHcCCCCCCEEEEECCCCcEEEEeCC------------CC---HHHHHHHHHHHhhccC
Confidence            8999999999999999999998743221            22   3567777777766443

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.51  E-value=5e-14  Score=113.91  Aligned_cols=72  Identities=24%  Similarity=0.442  Sum_probs=63.4

Q ss_pred             cCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchh
Q 014225          224 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK  303 (428)
Q Consensus       224 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~  303 (428)
                      .++|+++|+||++||++|+.+.|.|.+++++++           ++.++.|++|..                       .
T Consensus        22 ~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~-----------~~~~~~vd~~~~-----------------------~   67 (109)
T 3f3q_A           22 AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP-----------QADFYKLDVDEL-----------------------G   67 (109)
T ss_dssp             TSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEETTTC-----------------------H
T ss_pred             hcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC-----------CCEEEEEECCCC-----------------------H
Confidence            357999999999999999999999999998874           478899988855                       6


Q ss_pred             HHHHhcCcCccceEEEECCCCcEEecc
Q 014225          304 ELTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       304 ~~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      .+++.|+|.++|++++++ +|+++.+.
T Consensus        68 ~l~~~~~v~~~Pt~~~~~-~G~~~~~~   93 (109)
T 3f3q_A           68 DVAQKNEVSAMPTLLLFK-NGKEVAKV   93 (109)
T ss_dssp             HHHHHTTCCSSSEEEEEE-TTEEEEEE
T ss_pred             HHHHHcCCCccCEEEEEE-CCEEEEEE
Confidence            789999999999999996 99988874

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10

Probab=99.51  E-value=2.4e-14  Score=126.68  Aligned_cols=117  Identities=14%  Similarity=0.202  Sum_probs=98.5

Q ss_pred             hccCCCCccc-C--C---------CC----Cceecccc-cCCcEEEEEEe-ccCChhHH-hhhHHHHHHHHHH-Hhhhhh
Q 014225          202 LTNHDRGYLL-G--H---------PP----DEKVPVSS-LVGKTVGLYFS-ARWCIPCE-KFMPKLLSIYQKI-KQNLVE  261 (428)
Q Consensus       202 ~g~~~p~f~l-~--~---------~g----~~~v~l~~-~~gk~vll~F~-a~wC~~C~-~~~~~l~~l~~~~-~~~~~~  261 (428)
                      +|+++|+|++ +  .         +|    + .+++++ ++||++||+|| +.|||.|. .+++.+++.+.+| ++.   
T Consensus         3 vGd~aPdf~l~~~~~~~~~~~~~~~G~~~~~-~v~l~d~~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~---   78 (182)
T 1xiy_A            3 ENDLIPNVKVMIDVRNMNNISDTDGSPNDFT-SIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKEN---   78 (182)
T ss_dssp             TTCBCCCCEEEEEHHHHTC--------CCEE-EEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTS---
T ss_pred             CCCCCCCeEEEcccccccccccccCCCccce-eEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhC---
Confidence            5899999999 7  3         67    6 899999 69999999888 58999999 8999999999999 876   


Q ss_pred             cCCCCCCEE-EEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhcCcC-----------ccceEEEECCCCcEEec
Q 014225          262 KGDALEDFE-VVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ-----------GIPCLVIIGPEGKTVTK  329 (428)
Q Consensus       262 ~~~~~~~~~-iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~  329 (428)
                            ++. |++||+| +....++|..+.+.-+||++.|.+.++++.||+.           ..+.+|||| +|+|++.
T Consensus        79 ------g~~~V~gvS~D-~~~~~~~~~~~~~~~~f~lLsD~~~~~a~~yGv~~~~~~~G~g~~~~R~tfvId-dG~V~~~  150 (182)
T 1xiy_A           79 ------NFDDIYCITNN-DIYVLKSWFKSMDIKKIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKM  150 (182)
T ss_dssp             ------CCSEEEEEESS-CHHHHHHHHHHTTCCSSEEEECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEE
T ss_pred             ------CCcEEEEEeCC-CHHHHHHHHHHcCCCCceEEEeCchHHHHHhCCceeccccCCCCceEEEEEEEc-CCEEEEE
Confidence                  784 9999999 6667777877766326999999999999999973           256789998 9999988


Q ss_pred             c
Q 014225          330 Q  330 (428)
Q Consensus       330 ~  330 (428)
                      .
T Consensus       151 ~  151 (182)
T 1xiy_A          151 F  151 (182)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.51  E-value=4.1e-14  Score=119.43  Aligned_cols=95  Identities=23%  Similarity=0.430  Sum_probs=78.1

Q ss_pred             ccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcch
Q 014225          223 SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI  302 (428)
Q Consensus       223 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~  302 (428)
                      ..+|++++|+||++||++|+.+.|.|.++++++.           ++.++.|++|.+                       
T Consensus        43 ~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-----------~v~~~~v~~~~~-----------------------   88 (139)
T 3d22_A           43 SRDGKIVLANFSARWCGPSRQIAPYYIELSENYP-----------SLMFLVIDVDEL-----------------------   88 (139)
T ss_dssp             HHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEETTTS-----------------------
T ss_pred             hhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-----------CCEEEEEeCccc-----------------------
Confidence            3468999999999999999999999999988873           478999998855                       


Q ss_pred             hHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhcCCCC
Q 014225          303 KELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPRS  367 (428)
Q Consensus       303 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~~~~  367 (428)
                      .++++.|+|.++|+++++ ++|+++.+..       |.     +   .++|.+.|+++++..+++
T Consensus        89 ~~~~~~~~v~~~Pt~~~~-~~G~~~~~~~-------G~-----~---~~~l~~~l~~~~~~~~~~  137 (139)
T 3d22_A           89 SDFSASWEIKATPTFFFL-RDGQQVDKLV-------GA-----N---KPELHKKITAILDSLPPS  137 (139)
T ss_dssp             HHHHHHTTCCEESEEEEE-ETTEEEEEEE-------SC-----C---HHHHHHHHHHHHHTSCTT
T ss_pred             HHHHHHcCCCcccEEEEE-cCCeEEEEEe-------CC-----C---HHHHHHHHHHHhccCCCC
Confidence            678999999999999988 9999987642       21     2   267788888888876654

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=99.50  E-value=3.1e-14  Score=128.89  Aligned_cols=117  Identities=18%  Similarity=0.258  Sum_probs=93.1

Q ss_pred             cccccccCc-c----ccCCCCEEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHH
Q 014225           37 LLASKDRDY-L----LNQHGTQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA  110 (428)
Q Consensus        37 ~~g~~~pdf-l----~~~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~  110 (428)
                      .+|++|||| +    .+.+|++|+|++++||.|||+|| +.||+.|..++..+++++++|++.|  ++|++||.|.... 
T Consensus        27 ~vG~~APdF~~~a~l~d~~g~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~g--~~vigiS~Ds~~s-  103 (219)
T 3tue_A           27 KINSPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELN--CEVLACSIDSEYA-  103 (219)
T ss_dssp             CTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTTT--EEEEEEESSCHHH-
T ss_pred             ccCCcCCCCcccccccCCCCcEEehHHhCCCEEEEEEecccCCCCCchhHhhHHHHHhhhccCC--cEEEEeeCCchhh-
Confidence            479999999 4    46788899999999999999999 9999999999999999999999998  9999999997542 


Q ss_pred             HHHHHhcC----CC--ceec-cCChHHHHHHHhhcCCC----C--CceEEEEcCCCCCCCcccc
Q 014225          111 FNNYRACM----PW--LAVP-YSDLETKKALNRKFDIE----G--IPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       111 ~~~~~~~~----~~--~~~~-~~d~~~~~~l~~~~~v~----~--~P~~~lid~~~~dG~i~~~  161 (428)
                      -++|..+.    +.  +.+| .+|.+  ..++++||+-    +  .-.+||||+   +|+|...
T Consensus       104 h~~w~~~~~~~~~~~~l~fpllsD~~--~~va~~yGv~~~~~g~~~R~tFiIDp---~g~Ir~~  162 (219)
T 3tue_A          104 HLQWTLQDRKKGGLGTMAIPILADKT--KNIARSYGVLEESQGVAYRGLFIIDP---HGMLRQI  162 (219)
T ss_dssp             HHHHHHSCGGGTCCCSCSSCEEECTT--SHHHHHTTCEETTTTEECEEEEEECT---TSBEEEE
T ss_pred             HHHHhhhhHHhcCccccccccccCcc--cHHHHHcCCcccCCCeeEEEEEEECC---CCeEEEE
Confidence            34444321    11  2222 23444  8999999983    2  357999999   9988754

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.49  E-value=4.2e-14  Score=115.77  Aligned_cols=73  Identities=23%  Similarity=0.389  Sum_probs=63.8

Q ss_pred             ccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcch
Q 014225          223 SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI  302 (428)
Q Consensus       223 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~  302 (428)
                      +.++|+++|+||++||++|+.+.|.|.+++++++           ++.++.|++|..                       
T Consensus        28 ~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-----------~v~~~~vd~d~~-----------------------   73 (116)
T 3qfa_C           28 AAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYS-----------NVIFLEVDVDDC-----------------------   73 (116)
T ss_dssp             HHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCT-----------TSEEEEEETTTT-----------------------
T ss_pred             hcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-----------CCEEEEEECCCC-----------------------
Confidence            3468999999999999999999999999888764           478899988855                       


Q ss_pred             hHHHHhcCcCccceEEEECCCCcEEecc
Q 014225          303 KELTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       303 ~~~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      .++++.|+|.++|+++++ ++|+++.+.
T Consensus        74 ~~l~~~~~v~~~Pt~~~~-~~G~~~~~~  100 (116)
T 3qfa_C           74 QDVASECEVKSMPTFQFF-KKGQKVGEF  100 (116)
T ss_dssp             HHHHHHTTCCSSSEEEEE-SSSSEEEEE
T ss_pred             HHHHHHcCCccccEEEEE-eCCeEEEEE
Confidence            678999999999999999 899988764

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.49  E-value=5.6e-14  Score=116.47  Aligned_cols=92  Identities=20%  Similarity=0.254  Sum_probs=74.2

Q ss_pred             ccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCC
Q 014225           42 DRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPW  120 (428)
Q Consensus        42 ~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~  120 (428)
                      ++++ ..+.+|........+||+++|+||++||++|+.+.|.|.++++++++ +  +.++.|+.|.+..           
T Consensus         6 ~~~l~~~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~-~--v~~~~v~~~~d~~-----------   71 (126)
T 2l57_A            6 IKQINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREG-K--FNIYYARLEEEKN-----------   71 (126)
T ss_dssp             SSCTTTTCCSEESSTTTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSS-S--CEEEEEETTSSHH-----------
T ss_pred             cCCCCccccchhHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcC-C--eEEEEEeCCCCch-----------
Confidence            4445 55566655556667899999999999999999999999999999873 3  8899888542222           


Q ss_pred             ceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          121 LAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       121 ~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                                 ..+++.|++.++|+++++++   +|+++..
T Consensus        72 -----------~~~~~~~~v~~~Pt~~~~~~---~G~~~~~   98 (126)
T 2l57_A           72 -----------IDLAYKYDANIVPTTVFLDK---EGNKFYV   98 (126)
T ss_dssp             -----------HHHHHHTTCCSSSEEEEECT---TCCEEEE
T ss_pred             -----------HHHHHHcCCcceeEEEEECC---CCCEEEE
Confidence                       68899999999999999999   9988654

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.49  E-value=2.2e-13  Score=110.50  Aligned_cols=72  Identities=25%  Similarity=0.478  Sum_probs=64.8

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+||++||++|+.+.|.|.++++++++          ++.++.|++|.+                       .+
T Consensus        16 ~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~----------~v~~~~vd~~~~-----------------------~~   62 (112)
T 2voc_A           16 SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGD----------KLKIVKIDVDEN-----------------------QE   62 (112)
T ss_dssp             SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTT----------TCEEEEEETTTC-----------------------CS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC----------CcEEEEEECCCC-----------------------HH
Confidence            689999999999999999999999999998864          489999998865                       56


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      +++.|+|.++|+++++ ++|+++.+.
T Consensus        63 l~~~~~v~~~Pt~~~~-~~G~~~~~~   87 (112)
T 2voc_A           63 TAGKYGVMSIPTLLVL-KDGEVVETS   87 (112)
T ss_dssp             HHHHTTCCSBSEEEEE-ETTEEEEEE
T ss_pred             HHHHcCCCcccEEEEE-eCCEEEEEE
Confidence            8999999999999999 999998764

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.48  E-value=3.9e-14  Score=124.18  Aligned_cols=104  Identities=17%  Similarity=0.198  Sum_probs=67.4

Q ss_pred             eecccccCCcEEEEEEeccCChhHHhhhHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHH--HHHHhcCCc
Q 014225          218 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSF--ESYFGTMPW  292 (428)
Q Consensus       218 ~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~--~~~~~~~~~  292 (428)
                      .+..+..+||+|+|+|||+||++|+.+.+.+   .++.+.+++.          +.++.|++|...+-.  ..+......
T Consensus        39 ~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~----------~~~v~v~~d~~~~~~~~~~~~~~~~~  108 (172)
T 3f9u_A           39 GMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINND----------YVLITLYVDNKTPLTEPVKIMENGTE  108 (172)
T ss_dssp             HHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHH----------CEEEEEETTCCCEEEEEEEEEETTEE
T ss_pred             HHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCC----------EEEEEEecCcccccchhhhhhhcchh
Confidence            4455556799999999999999999974444   5555555544          889999998653100  000000001


Q ss_pred             cccccCCcchhHH-HHhcCcCccceEEEECCCCcEEeccc
Q 014225          293 LALPFGDPTIKEL-TKYFDVQGIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       293 ~~~~~~~d~~~~~-~~~~~v~~~P~~~lid~~G~i~~~~~  331 (428)
                      ..+....+....+ .+.|+|.++||++|||++|+++.+..
T Consensus       109 ~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~G~~~~~~~  148 (172)
T 3f9u_A          109 RTLRTVGDKWSYLQRVKFGANAQPFYVLIDNEGNPLNKSY  148 (172)
T ss_dssp             EEEEEHHHHHHHHHHHHHSCCCSSEEEEECTTSCBSSCCB
T ss_pred             hhhhhhhhhhhHHHHHHcCCCCcceEEEECCCCCEEeecc
Confidence            1111111222233 58899999999999999999988754

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.48  E-value=3e-14  Score=124.49  Aligned_cols=78  Identities=14%  Similarity=0.183  Sum_probs=64.7

Q ss_pred             cccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCC
Q 014225          220 PVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGD  299 (428)
Q Consensus       220 ~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~  299 (428)
                      .+++++|++++|+|||+|||+|+.+.|.|.++++.+.           ++.++.|++|.+                    
T Consensus        48 ~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~-----------~v~~~~v~~d~~--------------------   96 (167)
T 1z6n_A           48 RLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-----------NIELAIISKGRA--------------------   96 (167)
T ss_dssp             HHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT-----------TEEEEEECHHHH--------------------
T ss_pred             HHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-----------CcEEEEEECCCC--------------------
Confidence            4567789999999999999999999999999987753           488888887743                    


Q ss_pred             cchhHHHHhcC---cCccceEEEECCCCcEEeccc
Q 014225          300 PTIKELTKYFD---VQGIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       300 d~~~~~~~~~~---v~~~P~~~lid~~G~i~~~~~  331 (428)
                         .++++.|+   +.++||++++|.+|+++.+.+
T Consensus        97 ---~~~~~~~~~~~v~~iPt~i~~~~~G~~~~~~g  128 (167)
T 1z6n_A           97 ---EDDLRQRLALERIAIPLVLVLDEEFNLLGRFV  128 (167)
T ss_dssp             ---HHHTTTTTTCSSCCSSEEEEECTTCCEEEEEE
T ss_pred             ---HHHHHHHHHcCCCCcCeEEEECCCCCEEEEEc
Confidence               44555665   999999999999999987654

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.48  E-value=1.3e-14  Score=122.03  Aligned_cols=96  Identities=14%  Similarity=0.277  Sum_probs=76.3

Q ss_pred             cccccccCc--cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhcCCCcEEEEEEecCCChHHH
Q 014225           37 LLASKDRDY--LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAF  111 (428)
Q Consensus        37 ~~g~~~pdf--l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~vs~D~~~~~~  111 (428)
                      ..+..+|+|  +.+.++....+++.+||+++|+||++||++|+.+.|.+   .+++++++  +  +.++.|+++...   
T Consensus         5 ~~~~~~~~f~~~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~--~--~~~~~vd~~~~~---   77 (134)
T 2fwh_A            5 AQTQTHLNFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA--D--TVLLQANVTAND---   77 (134)
T ss_dssp             -----CCCCEECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT--T--SEEEEEECTTCC---
T ss_pred             cccccCCCcEEecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc--C--cEEEEEeCCCCc---
Confidence            346778888  55666667778888899999999999999999999999   88888875  2  888888776531   


Q ss_pred             HHHHhcCCCceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcc
Q 014225          112 NNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDAT  159 (428)
Q Consensus       112 ~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~  159 (428)
                                       +....+++.|++.++|+++++|+   +|+++
T Consensus        78 -----------------~~~~~l~~~~~v~~~Pt~~~~d~---~G~~v  105 (134)
T 2fwh_A           78 -----------------AQDVALLKHLNVLGLPTILFFDG---QGQEH  105 (134)
T ss_dssp             -----------------HHHHHHHHHTTCCSSSEEEEECT---TSCBC
T ss_pred             -----------------chHHHHHHHcCCCCCCEEEEECC---CCCEe
Confidence                             12278999999999999999999   99886

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.48  E-value=1.4e-13  Score=111.36  Aligned_cols=75  Identities=21%  Similarity=0.335  Sum_probs=62.5

Q ss_pred             cccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcc
Q 014225          222 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT  301 (428)
Q Consensus       222 ~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~  301 (428)
                      .+..|++++|+||++||++|+.+.|.|.+++++++           ++.++.|+++..                      
T Consensus        20 ~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~-----------~v~~~~vd~~~~----------------------   66 (111)
T 2pu9_C           20 KAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL-----------DVIFLKLDCNQE----------------------   66 (111)
T ss_dssp             TTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEECSST----------------------
T ss_pred             HhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCC-----------CeEEEEEecCcc----------------------
Confidence            33468999999999999999999999999988774           478888888732                      


Q ss_pred             hhHHHHhcCcCccceEEEECCCCcEEecc
Q 014225          302 IKELTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       302 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      ..++++.|+|.++||++ ++++|+++.+.
T Consensus        67 ~~~~~~~~~v~~~Pt~~-~~~~G~~~~~~   94 (111)
T 2pu9_C           67 NKTLAKELGIRVVPTFK-ILKENSVVGEV   94 (111)
T ss_dssp             THHHHHHHCCSBSSEEE-EESSSSEEEEE
T ss_pred             hHHHHHHcCCCeeeEEE-EEeCCcEEEEE
Confidence            26889999999999955 55999998764

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.48  E-value=1.8e-13  Score=109.80  Aligned_cols=72  Identities=22%  Similarity=0.508  Sum_probs=63.7

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+||++||++|+.+.|.|.++++++++          ++.++.|+++.+                       .+
T Consensus        19 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~~~v~~~~~-----------------------~~   65 (108)
T 2trx_A           19 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQG----------KLTVAKLNIDQN-----------------------PG   65 (108)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT----------TEEEEEEETTTC-----------------------TT
T ss_pred             cCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCC----------CcEEEEEECCCC-----------------------HH
Confidence            478999999999999999999999999988864          388999988855                       56


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      +++.|++.++|+++++ ++|+++.+.
T Consensus        66 ~~~~~~v~~~Pt~~~~-~~G~~~~~~   90 (108)
T 2trx_A           66 TAPKYGIRGIPTLLLF-KNGEVAATK   90 (108)
T ss_dssp             HHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred             HHHHcCCcccCEEEEE-eCCEEEEEE
Confidence            8899999999999999 899998764

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.48  E-value=1.4e-13  Score=111.37  Aligned_cols=73  Identities=21%  Similarity=0.541  Sum_probs=62.2

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+||++||++|+.+.|.|.+++++++..         ++.++.|+++.+                       .+
T Consensus        20 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~---------~~~~~~vd~~~~-----------------------~~   67 (112)
T 3d6i_A           20 GDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNS---------NVSFLSIDADEN-----------------------SE   67 (112)
T ss_dssp             TTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGT---------TSEEEEEETTTC-----------------------HH
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCC---------CEEEEEEecccC-----------------------HH
Confidence            4789999999999999999999999999887533         689999998865                       57


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      +++.|+|.++|+++++ ++|+++.+.
T Consensus        68 ~~~~~~v~~~Pt~~~~-~~G~~~~~~   92 (112)
T 3d6i_A           68 ISELFEISAVPYFIII-HKGTILKEL   92 (112)
T ss_dssp             HHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred             HHHHcCCCcccEEEEE-ECCEEEEEe
Confidence            8999999999999999 799998864

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.48  E-value=1.2e-13  Score=114.87  Aligned_cols=101  Identities=17%  Similarity=0.271  Sum_probs=76.4

Q ss_pred             eecccccCCcEEEEEEeccCChhHHhhhHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccc
Q 014225          218 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLA  294 (428)
Q Consensus       218 ~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~  294 (428)
                      .+.++..+||+++|+||++||++|+.+.|.+   ..+.+.+...          +.++.|+++.+               
T Consensus        19 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~----------~~~~~vd~~~~---------------   73 (130)
T 2kuc_A           19 ALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRH----------FVNLKMDMEKG---------------   73 (130)
T ss_dssp             HHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHH----------SEEEEECSSST---------------
T ss_pred             HHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcC----------eEEEEEecCCc---------------
Confidence            4555556789999999999999999999998   6666666544          66777776642               


Q ss_pred             cccCCcchhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhc
Q 014225          295 LPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKN  363 (428)
Q Consensus       295 ~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~  363 (428)
                            ....+++.|+|.++|+++++|++|+++.+..+       .    .+   .++|.+.|++.+..
T Consensus        74 ------~~~~~~~~~~v~~~Pt~~~~d~~G~~~~~~~G-------~----~~---~~~l~~~l~~~~~~  122 (130)
T 2kuc_A           74 ------EGVELRKKYGVHAYPTLLFINSSGEVVYRLVG-------A----ED---APELLKKVKLGVES  122 (130)
T ss_dssp             ------THHHHHHHTTCCSSCEEEEECTTSCEEEEEES-------C----CC---HHHHHHHHHHHHSC
T ss_pred             ------chHHHHHHcCCCCCCEEEEECCCCcEEEEecC-------C----CC---HHHHHHHHHHHHHh
Confidence                  13789999999999999999999999876432       1    12   25667777776653

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.47  E-value=8.6e-14  Score=111.99  Aligned_cols=72  Identities=17%  Similarity=0.351  Sum_probs=60.2

Q ss_pred             cCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhh
Q 014225           58 DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK  137 (428)
Q Consensus        58 ~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~  137 (428)
                      +.++|+|+|+|||+||+||+.+.|.+.++++.+++    +.++.|++|..                        ..+++.
T Consensus        17 ~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~----~~~~~vd~d~~------------------------~~l~~~   68 (105)
T 3zzx_A           17 EAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSD----VVFLKVDVDEC------------------------EDIAQD   68 (105)
T ss_dssp             HTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT----EEEEEEETTTC------------------------HHHHHH
T ss_pred             hcCCCEEEEEEECCCCCCccCCCcchhhhhhccCC----eEEEEEecccC------------------------HHHHHH
Confidence            34579999999999999999999999999988753    66777666543                        678999


Q ss_pred             cCCCCCceEEEEcCCCCCCCcccc
Q 014225          138 FDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       138 ~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      |+|.++||++++.    +|+.+.+
T Consensus        69 ~~V~~~PT~~~~~----~G~~v~~   88 (105)
T 3zzx_A           69 NQIACMPTFLFMK----NGQKLDS   88 (105)
T ss_dssp             TTCCBSSEEEEEE----TTEEEEE
T ss_pred             cCCCeecEEEEEE----CCEEEEE
Confidence            9999999988885    8987754

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.47  E-value=1.3e-13  Score=114.83  Aligned_cols=90  Identities=18%  Similarity=0.358  Sum_probs=72.9

Q ss_pred             ccccCccccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCC
Q 014225           40 SKDRDYLLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMP  119 (428)
Q Consensus        40 ~~~pdfl~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~  119 (428)
                      ..+|++ ...+++.++....+||+++|+||++||++|+.+.|.+.+++++++++   +.++.|++|..            
T Consensus        22 ~~~~~~-~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~---v~~~~vd~d~~------------   85 (128)
T 3ul3_B           22 KKVPRL-QQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKR---IYLLKVDLDKN------------   85 (128)
T ss_dssp             ----CC-CCCCCSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG---EEEEEEEGGGC------------
T ss_pred             ccCCcc-ccCCccHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---eEEEEEECCCC------------
Confidence            344553 34567677778889999999999999999999999999999999864   88888877654            


Q ss_pred             CceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          120 WLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       120 ~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                                  ..+++.|++.++|+++++ +   +|+++.+
T Consensus        86 ------------~~l~~~~~v~~~Pt~~~~-~---~G~~~~~  111 (128)
T 3ul3_B           86 ------------ESLARKFSVKSLPTIILL-K---NKTMLAR  111 (128)
T ss_dssp             ------------HHHHHHTTCCSSSEEEEE-E---TTEEEEE
T ss_pred             ------------HHHHHHcCCCCcCEEEEE-E---CCEEEEE
Confidence                        678899999999999999 4   7877654

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.47  E-value=1.3e-13  Score=110.67  Aligned_cols=73  Identities=23%  Similarity=0.402  Sum_probs=65.1

Q ss_pred             cCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchh
Q 014225          224 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK  303 (428)
Q Consensus       224 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~  303 (428)
                      ..+++++|+||++||++|+.+.|.|.++.++++++          +.++.|++|.+                       .
T Consensus        19 ~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~-----------------------~   65 (109)
T 3tco_A           19 RNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGK----------AVFGRLNVDEN-----------------------Q   65 (109)
T ss_dssp             HHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT----------SEEEEEETTTC-----------------------H
T ss_pred             hcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCC----------ceEEEEccccC-----------------------H
Confidence            35899999999999999999999999999988754          78899988865                       6


Q ss_pred             HHHHhcCcCccceEEEECCCCcEEecc
Q 014225          304 ELTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       304 ~~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      .+++.|++.++|+++++ ++|+++.+.
T Consensus        66 ~~~~~~~i~~~Pt~~~~-~~g~~~~~~   91 (109)
T 3tco_A           66 KIADKYSVLNIPTTLIF-VNGQLVDSL   91 (109)
T ss_dssp             HHHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred             HHHHhcCcccCCEEEEE-cCCcEEEee
Confidence            78999999999999999 999998874

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.47  E-value=1.1e-13  Score=115.71  Aligned_cols=71  Identities=17%  Similarity=0.234  Sum_probs=64.7

Q ss_pred             cEEEEEEeccCC--hhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          227 KTVGLYFSARWC--IPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       227 k~vll~F~a~wC--~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      ++|||+|||+||  ++|+.+.|.|.++.++|.++          +.++.|++|.+                       .+
T Consensus        34 ~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~----------v~~~KVdvDe~-----------------------~~   80 (137)
T 2qsi_A           34 KIVVLFFRGDAVRFPEAADLAVVLPELINAFPGR----------LVAAEVAAEAE-----------------------RG   80 (137)
T ss_dssp             SEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTT----------EEEEEECGGGH-----------------------HH
T ss_pred             CcEEEEEeCCccCCCchhhHHhHHHHHHHHccCC----------cEEEEEECCCC-----------------------HH
Confidence            499999999999  99999999999999999755          88999988854                       78


Q ss_pred             HHHhcCcCccceEEEECCCCcEEeccc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~~  331 (428)
                      ++..|+|+++||++++ ++|+++.+..
T Consensus        81 la~~ygV~siPTlilF-kdG~~v~~~v  106 (137)
T 2qsi_A           81 LMARFGVAVCPSLAVV-QPERTLGVIA  106 (137)
T ss_dssp             HHHHHTCCSSSEEEEE-ECCEEEEEEE
T ss_pred             HHHHcCCccCCEEEEE-ECCEEEEEEe
Confidence            9999999999999999 9999999843

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.47  E-value=1.4e-13  Score=118.02  Aligned_cols=69  Identities=22%  Similarity=0.297  Sum_probs=61.3

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++|+|+|||+||++|+.+.|.|.+++++++++          +.++.|++|..                       .+
T Consensus        22 ~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~----------~~~~~vd~d~~-----------------------~~   68 (149)
T 3gix_A           22 AEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKM----------AAIYLVDVDQT-----------------------AV   68 (149)
T ss_dssp             CSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTT----------EEEEEEETTTC-----------------------CH
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCc----------eEEEEEECCcC-----------------------HH
Confidence            4799999999999999999999999999888643          88999998755                       67


Q ss_pred             HHHhcCcCccceEEEECCCCcEE
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTV  327 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~  327 (428)
                      +++.|+|.++||++++ ++|+++
T Consensus        69 l~~~~~v~~~Pt~~~~-~~G~~v   90 (149)
T 3gix_A           69 YTQYFDISYIPSTVFF-FNGQHM   90 (149)
T ss_dssp             HHHHTTCCSSSEEEEE-ETTEEE
T ss_pred             HHHHcCCCccCeEEEE-ECCeEE
Confidence            8999999999999955 899988

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=99.47  E-value=7.3e-14  Score=122.33  Aligned_cols=118  Identities=17%  Similarity=0.199  Sum_probs=93.0

Q ss_pred             cccccccCc-cccCCC----------CEEecccC-CCC-EEEEEEecCCChhhhh-hHHHHHHHHHHHhcCCCcE-EEEE
Q 014225           37 LLASKDRDY-LLNQHG----------TQVKVSDL-EGK-VTALYFSANWYPPCGN-FTGVLVDVYEELRNNGSDF-EVVF  101 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G----------~~v~l~~~-~gk-~vlv~F~a~wC~~C~~-~~p~l~~l~~~~~~~~~~~-~ii~  101 (428)
                      ++|+.+|+. +....+          ++++|+++ +|| +||++||+.|||+|.. ++|.+++.+++|++.|  + +|++
T Consensus        11 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~vsLsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g--~d~Vig   88 (176)
T 4f82_A           11 QVGDALPDAQLFEFIDDAREGCTLGPNACSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAG--IDEIWC   88 (176)
T ss_dssp             CTTCBCCCCEEEEEECSCCTTCCSEEEEEEHHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTT--CCEEEE
T ss_pred             hcCCcCCceEEEEecccccccccCCceEEeHHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCC--CCEEEE
Confidence            478999997 543322          57999997 998 5566888999999999 9999999999999988  8 9999


Q ss_pred             EecCCChHHHHHHHhcCCCc--eeccCChHHHHHHHhhcCCC-----------CCceEEEEcCCCCCCCcccccc
Q 014225          102 VSSDEDLNAFNNYRACMPWL--AVPYSDLETKKALNRKFDIE-----------GIPCLVVLQPYDDKDDATLHDG  163 (428)
Q Consensus       102 vs~D~~~~~~~~~~~~~~~~--~~~~~d~~~~~~l~~~~~v~-----------~~P~~~lid~~~~dG~i~~~~~  163 (428)
                      ||.|. ....++|.++.+..  ....+|.+  ..++++||+.           ..++++|| +   +|+|++...
T Consensus        89 IS~D~-~~~~~~f~~~~~l~~~f~lLsD~~--~~va~ayGv~~~~~~~G~g~~s~R~tfII-~---dG~I~~~~~  156 (176)
T 4f82_A           89 VSVND-AFVMGAWGRDLHTAGKVRMMADGS--AAFTHALGLTQDLSARGMGIRSLRYAMVI-D---GGVVKTLAV  156 (176)
T ss_dssp             EESSC-HHHHHHHHHHTTCTTTSEEEECTT--CHHHHHHTCEEECGGGTCCEEECCEEEEE-E---TTEEEEEEE
T ss_pred             EeCCC-HHHHHHHHHHhCCCCCceEEEcCc--hHHHHHhCCCccccccCCCcccccEEEEE-c---CCEEEEEEE
Confidence            99985 56688888877653  22334544  7899999873           25889999 8   999987643

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.46  E-value=2.7e-13  Score=109.68  Aligned_cols=72  Identities=26%  Similarity=0.467  Sum_probs=63.4

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+||++||++|+.+.|.|.++++++++          ++.++.|++|.+                       .+
T Consensus        22 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~~~v~~~~~-----------------------~~   68 (112)
T 1t00_A           22 NDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGD----------KIEIVKLNIDEN-----------------------PG   68 (112)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT----------TCEEEEEETTTC-----------------------HH
T ss_pred             CCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcC----------CeEEEEEEcCCC-----------------------HH
Confidence            478999999999999999999999999988864          388999998865                       67


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      +++.|+|.++|+++++ ++|+++.+.
T Consensus        69 ~~~~~~v~~~Pt~~~~-~~G~~~~~~   93 (112)
T 1t00_A           69 TAAKYGVMSIPTLNVY-QGGEVAKTI   93 (112)
T ss_dssp             HHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred             HHHhCCCCcccEEEEE-eCCEEEEEE
Confidence            8999999999999888 899998764

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.46  E-value=3.6e-14  Score=119.04  Aligned_cols=92  Identities=8%  Similarity=0.034  Sum_probs=73.1

Q ss_pred             CCcEEEEEEeccC--ChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcch
Q 014225          225 VGKTVGLYFSARW--CIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI  302 (428)
Q Consensus       225 ~gk~vll~F~a~w--C~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~  302 (428)
                      .+++|||+|||+|  |++|+.+.|.|.++.++|.++         .+.|+.|++|.+                       
T Consensus        33 ~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~---------~v~~~KVdvDe~-----------------------   80 (140)
T 2qgv_A           33 QAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDY---------TWQVAIADLEQS-----------------------   80 (140)
T ss_dssp             TCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTS---------CCEEEECCHHHH-----------------------
T ss_pred             CCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCC---------eEEEEEEECCCC-----------------------
Confidence            4567899999999  999999999999999998643         278888888744                       


Q ss_pred             hHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhc
Q 014225          303 KELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKN  363 (428)
Q Consensus       303 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~  363 (428)
                      .+++..|||+++||++++ ++|+++.+..       |..    ..   ++|.+.|++.+..
T Consensus        81 ~~lA~~ygV~sIPTlilF-k~G~~v~~~~-------G~~----~k---~~l~~~i~~~l~~  126 (140)
T 2qgv_A           81 EAIGDRFGAFRFPATLVF-TGGNYRGVLN-------GIH----PW---AELINLMRGLVEP  126 (140)
T ss_dssp             HHHHHHHTCCSSSEEEEE-ETTEEEEEEE-------SCC----CH---HHHHHHHHHHHC-
T ss_pred             HHHHHHcCCccCCEEEEE-ECCEEEEEEe-------cCC----CH---HHHHHHHHHHhcC
Confidence            789999999999999999 9999998843       322    22   4566667766643

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.46  E-value=2.3e-13  Score=113.47  Aligned_cols=72  Identities=21%  Similarity=0.457  Sum_probs=63.8

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+||++||++|+.+.|.|.++++++++          ++.++.|++|.+                       .+
T Consensus        39 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~----------~v~~~~vd~~~~-----------------------~~   85 (128)
T 2o8v_B           39 ADGAILVDFWAEWCGPAKMIAPILDEIADEYQG----------KLTVAKLNIDQN-----------------------PG   85 (128)
T ss_dssp             CSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTT----------TEEEEEEETTTC-----------------------CT
T ss_pred             cCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcC----------CeEEEEEECCCC-----------------------HH
Confidence            579999999999999999999999999988864          389999998865                       46


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      +++.|+|.++|+++++ ++|+++.+.
T Consensus        86 l~~~~~v~~~Pt~~~~-~~G~~~~~~  110 (128)
T 2o8v_B           86 TAPKYGIRGIPTLLLF-KNGEVAATK  110 (128)
T ss_dssp             TSGGGTCCSSSEEEEE-ETTEEEEEE
T ss_pred             HHHHcCCCccCEEEEE-eCCEEEEEE
Confidence            7889999999999999 999998764

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.46  E-value=1.4e-13  Score=110.35  Aligned_cols=71  Identities=15%  Similarity=0.285  Sum_probs=55.3

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+||++||++|+.+.|.+.++++++.           ++.++.|++|.+                       .+
T Consensus        17 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~-----------~~~~~~vd~~~~-----------------------~~   62 (105)
T 4euy_A           17 EQQLVLLFIKTENCGVCDVMLRKVNYVLENYN-----------YVEKIEILLQDM-----------------------QE   62 (105)
T ss_dssp             CSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT-----------TEEEEEEEECCC-------------------------
T ss_pred             cCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC-----------CceEEEEECCCC-----------------------HH
Confidence            57999999999999999999999999998773           589999998865                       57


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      +++.|+|.++||++++ ++|+++.+.
T Consensus        63 l~~~~~v~~~Pt~~~~-~~G~~~~~~   87 (105)
T 4euy_A           63 IAGRYAVFTGPTVLLF-YNGKEILRE   87 (105)
T ss_dssp             -------CCCCEEEEE-ETTEEEEEE
T ss_pred             HHHhcCCCCCCEEEEE-eCCeEEEEE
Confidence            8899999999999999 699998764

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=99.46  E-value=1e-14  Score=127.24  Aligned_cols=111  Identities=17%  Similarity=0.313  Sum_probs=76.7

Q ss_pred             eecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCcccccc
Q 014225          218 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF  297 (428)
Q Consensus       218 ~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~  297 (428)
                      .+.....+||+|+|+||++||++|+.+.|.|.++.+.+...          +.++.|++|.+.                 
T Consensus        38 ~~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~----------~~~~~v~~d~~~-----------------   90 (164)
T 1sen_A           38 GKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELS----------HNFVMVNLEDEE-----------------   90 (164)
T ss_dssp             HHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHH----------TTSEEEEEEGGG-----------------
T ss_pred             HHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcC----------CeEEEEEecCCc-----------------
Confidence            55566677999999999999999999999999987665543          567888877442                 


Q ss_pred             CCcchhHHHHhcCc--CccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhcC
Q 014225          298 GDPTIKELTKYFDV--QGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNL  364 (428)
Q Consensus       298 ~~d~~~~~~~~~~v--~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~  364 (428)
                           ..+...|++  .++||++++|++|+++.+..+.    .+...|.+.....++|.+.|++++...
T Consensus        91 -----~~~~~~~~~~~~~~Pt~~~~d~~G~~~~~~~G~----~~~~~~~~~~~~~~~l~~~l~~~l~~~  150 (164)
T 1sen_A           91 -----EPKDEDFSPDGGYIPRILFLDPSGKVHPEIINE----NGNPSYKYFYVSAEQVVQGMKEAQERL  150 (164)
T ss_dssp             -----SCSCGGGCTTCSCSSEEEEECTTSCBCTTCCCT----TSCTTSTTCCCSHHHHHHHHHHHHHHH
T ss_pred             -----hHHHHHhcccCCcCCeEEEECCCCCEEEEEeCC----CCccchhcccCCHHHHHHHHHHHHHhc
Confidence                 114556777  6799999999999998764331    111122222233466667776666543

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.46  E-value=2.8e-13  Score=108.12  Aligned_cols=72  Identities=21%  Similarity=0.389  Sum_probs=64.5

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+||++||++|+.+.|.+.+++++++++          +.++.|++|.+                       .+
T Consensus        18 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~-----------------------~~   64 (106)
T 3die_A           18 ESGVQLVDFWATACGPCKMIAPVLEELAADYEGK----------ADILKLDVDEN-----------------------PS   64 (106)
T ss_dssp             CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTT----------CEEEEEETTTC-----------------------HH
T ss_pred             cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC----------cEEEEEECCcC-----------------------HH
Confidence            7899999999999999999999999999998754          88999998865                       67


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      +++.|++.++|+++++ ++|+++.+.
T Consensus        65 ~~~~~~v~~~Pt~~~~-~~G~~~~~~   89 (106)
T 3die_A           65 TAAKYEVMSIPTLIVF-KDGQPVDKV   89 (106)
T ss_dssp             HHHHTTCCSBSEEEEE-ETTEEEEEE
T ss_pred             HHHhCCCcccCEEEEE-eCCeEEEEE
Confidence            8999999999999999 599988764

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.45  E-value=3.3e-13  Score=108.08  Aligned_cols=72  Identities=24%  Similarity=0.467  Sum_probs=63.3

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+||++||++|+.+.|.|.+++++++++          +.++.|++|.+                       .+
T Consensus        18 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~----------~~~~~v~~~~~-----------------------~~   64 (107)
T 1dby_A           18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK----------LKCVKLNTDES-----------------------PN   64 (107)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT----------CEEEEEETTTC-----------------------HH
T ss_pred             CCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCc----------eEEEEEECCCC-----------------------HH
Confidence            4789999999999999999999999999888643          88999998865                       57


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      +++.|++.++|+++++ ++|+++.+.
T Consensus        65 ~~~~~~v~~~Pt~~~~-~~G~~~~~~   89 (107)
T 1dby_A           65 VASEYGIRSIPTIMVF-KGGKKCETI   89 (107)
T ss_dssp             HHHHHTCCSSCEEEEE-SSSSEEEEE
T ss_pred             HHHHCCCCcCCEEEEE-eCCEEEEEE
Confidence            8899999999999888 899998764

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.45  E-value=2.8e-13  Score=112.24  Aligned_cols=71  Identities=27%  Similarity=0.509  Sum_probs=62.8

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      ++++++|+||++||++|+.+.|.|.++++++.           ++.++.|++|.+                       .+
T Consensus        37 ~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-----------~v~~~~vd~d~~-----------------------~~   82 (124)
T 1xfl_A           37 SKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-----------NVLFLKVDTDEL-----------------------KS   82 (124)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS-----------SEEEEEEETTTS-----------------------HH
T ss_pred             cCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-----------CcEEEEEECccC-----------------------HH
Confidence            58999999999999999999999999988764           488999988754                       67


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      +++.|+|.++|+++++ ++|+++.+.
T Consensus        83 l~~~~~v~~~Pt~~~~-~~G~~~~~~  107 (124)
T 1xfl_A           83 VASDWAIQAMPTFMFL-KEGKILDKV  107 (124)
T ss_dssp             HHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred             HHHHcCCCccCEEEEE-ECCEEEEEE
Confidence            8999999999998888 899998764

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=5.4e-13  Score=111.25  Aligned_cols=95  Identities=15%  Similarity=0.268  Sum_probs=73.5

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+||++||++|+.+.|.|.+++++++...      ..++.++.|+++.+                       ..
T Consensus        24 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~------~~~~~~~~vd~~~~-----------------------~~   74 (133)
T 1x5d_A           24 SEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQT------KGKVKLAAVDATVN-----------------------QV   74 (133)
T ss_dssp             SSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHT------TTSEEEEEEETTTC-----------------------CH
T ss_pred             CCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhc------CCcEEEEEEECCCC-----------------------HH
Confidence            47899999999999999999999999999997310      12588888888754                       67


Q ss_pred             HHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKN  363 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~  363 (428)
                      +++.|+|.++|+++++++ |+++.+..+           ..+   .++|.+.|++++..
T Consensus        75 l~~~~~v~~~Pt~~~~~~-g~~~~~~~G-----------~~~---~~~l~~~l~~~~~~  118 (133)
T 1x5d_A           75 LASRYGIRGFPTIKIFQK-GESPVDYDG-----------GRT---RSDIVSRALDLFSD  118 (133)
T ss_dssp             HHHHHTCCSSSEEEEEET-TEEEEEECS-----------CCS---HHHHHHHHHHHHHH
T ss_pred             HHHhCCCCeeCeEEEEeC-CCceEEecC-----------CCC---HHHHHHHHHHHhhc
Confidence            899999999999999976 877665322           112   35667777776654

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.45  E-value=6.1e-14  Score=120.28  Aligned_cols=104  Identities=12%  Similarity=0.168  Sum_probs=77.3

Q ss_pred             cCCcEEEEEEeccCChhHHhhhHHHHHHHH--HHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcc
Q 014225          224 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQ--KIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT  301 (428)
Q Consensus       224 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~--~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~  301 (428)
                      ..||+|+|+|||+||++|+.+.|.+.+..+  .+..           ..++.|.+|.+.                     
T Consensus        42 ~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~-----------~~fv~V~vD~e~---------------------   89 (151)
T 3ph9_A           42 KSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQ-----------NKFIMLNLMHET---------------------   89 (151)
T ss_dssp             HHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHH-----------HTCEEEEESSCC---------------------
T ss_pred             HcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhh-----------cCeEEEEecCCc---------------------
Confidence            458999999999999999999999886422  2222           235667776331                     


Q ss_pred             hhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhcC
Q 014225          302 IKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNL  364 (428)
Q Consensus       302 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~  364 (428)
                       .++...|++.++||++++|++|+++.+..|    .++...|+......+++.+.++++++..
T Consensus        90 -~~~~~~~~v~~~PT~~f~~~~G~~v~~~~G----~~~~~~~~~~~~~~~~ll~~~~~al~~~  147 (151)
T 3ph9_A           90 -TDKNLSPDGQYVPRIMFVDPSLTVRADIAG----RYSNRLYTYEPRDLPLLIENMKKALRLI  147 (151)
T ss_dssp             -SCGGGCTTCCCSSEEEEECTTSCBCTTCCC----SCTTSTTCCCGGGHHHHHHHHHHHHSCC
T ss_pred             -hhhHhhcCCCCCCEEEEECCCCCEEEEEeC----CcCCcccccchhhHHHHHHHHHHHHHHH
Confidence             234567899999999999999999987544    3344556777888889999998887643

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.45  E-value=1.7e-13  Score=109.40  Aligned_cols=72  Identities=26%  Similarity=0.472  Sum_probs=63.8

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+||++||++|+.+.|.|.++.++++++          +.++.|++|.+                       .+
T Consensus        16 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~----------v~~~~v~~~~~-----------------------~~   62 (105)
T 1nsw_A           16 GDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK----------VTVAKLNVDEN-----------------------PE   62 (105)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTT----------CEEEEEETTTC-----------------------HH
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC----------cEEEEEECcCC-----------------------HH
Confidence            4689999999999999999999999999887643          88999998865                       67


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      +++.|++.++|+++++ ++|+++.+.
T Consensus        63 ~~~~~~v~~~Pt~~~~-~~G~~~~~~   87 (105)
T 1nsw_A           63 TTSQFGIMSIPTLILF-KGGRPVKQL   87 (105)
T ss_dssp             HHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred             HHHHcCCccccEEEEE-eCCeEEEEE
Confidence            8999999999999999 999988764

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.45  E-value=3.8e-13  Score=111.90  Aligned_cols=94  Identities=21%  Similarity=0.308  Sum_probs=73.0

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+||++||++|+.+.|.|.++++++++.          +.++.|++|.+                       ..
T Consensus        34 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~----------~~~~~vd~~~~-----------------------~~   80 (130)
T 2dml_A           34 SDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDV----------VKVGAVNADKH-----------------------QS   80 (130)
T ss_dssp             CSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTT----------SEEEEEETTTC-----------------------HH
T ss_pred             CCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCc----------eEEEEEeCCCC-----------------------HH
Confidence            4689999999999999999999999999988643          78888888755                       67


Q ss_pred             HHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhcCC
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLP  365 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~~  365 (428)
                      +++.|+|.++|++++++++|+++.+..+           ..+   .++|.+.|.+.+...+
T Consensus        81 l~~~~~v~~~Pt~~~~~~~~~~~~~~~G-----------~~~---~~~l~~~l~~~l~~~~  127 (130)
T 2dml_A           81 LGGQYGVQGFPTIKIFGANKNKPEDYQG-----------GRT---GEAIVDAALSALRSGP  127 (130)
T ss_dssp             HHHHHTCCSSSEEEEESSCTTSCEECCS-----------CCS---HHHHHHHHHHHHHHSS
T ss_pred             HHHHcCCCccCEEEEEeCCCCeEEEeec-----------CCC---HHHHHHHHHHHHhcCC
Confidence            8999999999999999988873333211           112   3556777777665443

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.45  E-value=3.1e-13  Score=110.96  Aligned_cols=72  Identities=25%  Similarity=0.493  Sum_probs=63.6

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+||++||++|+.+.|.|.++++++..          ++.++.|++|.+                       .+
T Consensus        30 ~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~----------~v~~~~vd~d~~-----------------------~~   76 (119)
T 1w4v_A           30 SETPVVVDFHAQWCGPCKILGPRLEKMVAKQHG----------KVVMAKVDIDDH-----------------------TD   76 (119)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT----------SSEEEEEETTTT-----------------------HH
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC----------CeEEEEEeCCCC-----------------------HH
Confidence            478999999999999999999999999988754          488999998855                       67


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      +++.|+|.++|+++++ ++|+++.+.
T Consensus        77 l~~~~~v~~~Pt~~~~-~~G~~~~~~  101 (119)
T 1w4v_A           77 LAIEYEVSAVPTVLAM-KNGDVVDKF  101 (119)
T ss_dssp             HHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred             HHHHcCCCcccEEEEE-eCCcEEEEE
Confidence            8999999999999999 899998764

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.45  E-value=4.4e-13  Score=107.62  Aligned_cols=71  Identities=14%  Similarity=0.232  Sum_probs=62.7

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+||++||++|+.+.|.|.++++++.           ++.++.|++|.+                       .+
T Consensus        20 ~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~-----------~~~~~~vd~~~~-----------------------~~   65 (107)
T 1gh2_A           20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP-----------QAVFLEVDVHQC-----------------------QG   65 (107)
T ss_dssp             TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT-----------TSEEEEEETTTS-----------------------HH
T ss_pred             CCCEEEEEEECCCChhhHHHHHHHHHHHHHCC-----------CcEEEEEECccC-----------------------HH
Confidence            57899999999999999999999999998873           478999998865                       67


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      +++.|+|.++||++++ ++|+++.+.
T Consensus        66 ~~~~~~v~~~Pt~~~~-~~G~~~~~~   90 (107)
T 1gh2_A           66 TAATNNISATPTFQFF-RNKVRIDQY   90 (107)
T ss_dssp             HHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred             HHHhcCCCcccEEEEE-ECCeEEEEE
Confidence            8899999999999999 899988764

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.45  E-value=2.6e-14  Score=123.28  Aligned_cols=104  Identities=14%  Similarity=0.296  Sum_probs=78.4

Q ss_pred             cccccccCccccCCCCEEecccCCCCEEEEEEe-cCCChhhhhhHHHH---HHHHHHHhcCCCcEEEEEEecCCChHHHH
Q 014225           37 LLASKDRDYLLNQHGTQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFN  112 (428)
Q Consensus        37 ~~g~~~pdfl~~~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~vs~D~~~~~~~  112 (428)
                      .++...++|  +..|+.+.++..+||+++|+|| ++||++|+.++|.|   .++.+.+...   +.++.|+.+....   
T Consensus        25 ~~~~~~~~~--~~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~---~~~v~vd~~~~~~---   96 (154)
T 2ju5_A           25 PIAAANLQW--ESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVH---LHMVEVDFPQKNH---   96 (154)
T ss_dssp             SSCCCCCCE--ECHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHH---CEEEEEECCSSCC---
T ss_pred             hcccCCCCC--CCHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCc---EEEEEecCccccC---
Confidence            344445555  4456678888889999999999 99999999999999   7776655443   8888887766531   


Q ss_pred             HHHhcCCCceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          113 NYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       113 ~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                                +++...+....+++.|++.++|+++|+|+   +|+++.+
T Consensus        97 ----------~~~~~~~~~~~l~~~~~v~~~Pt~~~~d~---~G~~~~~  132 (154)
T 2ju5_A           97 ----------QPEEQRQKNQELKAQYKVTGFPELVFIDA---EGKQLAR  132 (154)
T ss_dssp             ----------CCHHHHHHHHHHHHHTTCCSSSEEEEECT---TCCEEEE
T ss_pred             ----------CChhhHhhHHHHHHHcCCCCCCEEEEEcC---CCCEEEE
Confidence                      11112233478999999999999999999   9998865

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.45  E-value=4.5e-13  Score=107.99  Aligned_cols=90  Identities=21%  Similarity=0.419  Sum_probs=72.6

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+||++||++|+.+.|.+.++.++++++          +.++.|++|.+                       ..
T Consensus        21 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~----------v~~~~vd~~~~-----------------------~~   67 (111)
T 3gnj_A           21 EGKACLVMFSRKNCHVCQKVTPVLEELRLNYEES----------FGFYYVDVEEE-----------------------KT   67 (111)
T ss_dssp             SCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTT----------SEEEEEETTTC-----------------------HH
T ss_pred             cCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCc----------eEEEEEECCcC-----------------------hh
Confidence            4689999999999999999999999999988643          88999998865                       67


Q ss_pred             HHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHh
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAK  362 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~  362 (428)
                      +++.|+|.++|+++++ ++|+++.+..+           ..+   .++|.+.|++++.
T Consensus        68 l~~~~~v~~~Pt~~~~-~~g~~~~~~~g-----------~~~---~~~l~~~l~~~l~  110 (111)
T 3gnj_A           68 LFQRFSLKGVPQILYF-KDGEYKGKMAG-----------DVE---DDEVEQMIADVLE  110 (111)
T ss_dssp             HHHHTTCCSSCEEEEE-ETTEEEEEEES-----------SCC---HHHHHHHHHHHHH
T ss_pred             HHHhcCCCcCCEEEEE-ECCEEEEEEec-----------cCC---HHHHHHHHHHHhc
Confidence            8999999999999999 89988866432           122   2556666666554

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.45  E-value=4.4e-13  Score=113.02  Aligned_cols=105  Identities=26%  Similarity=0.354  Sum_probs=77.6

Q ss_pred             CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCC
Q 014225          212 GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMP  291 (428)
Q Consensus       212 ~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~  291 (428)
                      ..++. .+...-..+++++|+||++||++|+.+.|.|.++++++++.       +.++.++.|+++.+            
T Consensus        21 ~l~~~-~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~-------~~~v~~~~vd~~~~------------   80 (140)
T 2dj1_A           21 VLNDG-NFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDN-------DPPIAVAKIDATSA------------   80 (140)
T ss_dssp             ECCTT-THHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSS-------SSCCEEEEECTTTC------------
T ss_pred             EcChH-hHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhcc-------CCceEEEEEeCccc------------
Confidence            33444 44332235799999999999999999999999999999865       33477777776644            


Q ss_pred             ccccccCCcchhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhc
Q 014225          292 WLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKN  363 (428)
Q Consensus       292 ~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~  363 (428)
                                 ..+++.|+|.++|+++++ ++|++....|.            .+   .++|.+.|++++..
T Consensus        81 -----------~~~~~~~~v~~~Pt~~~~-~~G~~~~~~g~------------~~---~~~l~~~l~~~~~~  125 (140)
T 2dj1_A           81 -----------SMLASKFDVSGYPTIKIL-KKGQAVDYDGS------------RT---QEEIVAKVREVSQP  125 (140)
T ss_dssp             -----------HHHHHHTTCCSSSEEEEE-ETTEEEECCSC------------CC---HHHHHHHHHHHHSS
T ss_pred             -----------HHHHHHCCCCccCeEEEE-ECCcEEEcCCC------------CC---HHHHHHHHHHhcCC
Confidence                       678999999999999999 88984433221            22   35677777777764

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.44  E-value=5.8e-13  Score=107.94  Aligned_cols=90  Identities=20%  Similarity=0.399  Sum_probs=73.2

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+||++||++|+.+.|.|.++.+.++++          +.++.|++|.+                       ..
T Consensus        24 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~----------v~~~~v~~~~~-----------------------~~   70 (115)
T 1thx_A           24 AEQPVLVYFWASWCGPCQLMSPLINLAANTYSDR----------LKVVKLEIDPN-----------------------PT   70 (115)
T ss_dssp             CSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT----------CEEEEEESTTC-----------------------HH
T ss_pred             CCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCc----------EEEEEEEcCCC-----------------------HH
Confidence            5789999999999999999999999999888643          89999998865                       57


Q ss_pred             HHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHh
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAK  362 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~  362 (428)
                      +++.|+|.++|+++++ ++|+++.+..+       .    .+   .++|.+.|+++++
T Consensus        71 ~~~~~~v~~~Pt~~~~-~~G~~~~~~~g-------~----~~---~~~l~~~l~~~l~  113 (115)
T 1thx_A           71 TVKKYKVEGVPALRLV-KGEQILDSTEG-------V----IS---KDKLLSFLDTHLN  113 (115)
T ss_dssp             HHHHTTCCSSSEEEEE-ETTEEEEEEES-------C----CC---HHHHHHHHHHHHC
T ss_pred             HHHHcCCCceeEEEEE-cCCEEEEEecC-------C----CC---HHHHHHHHHHHhc
Confidence            8999999999999999 99999876422       1    12   2556666766654

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.44  E-value=3.3e-13  Score=114.71  Aligned_cols=71  Identities=18%  Similarity=0.269  Sum_probs=62.5

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++|+|+|||+||++|+.+.|.|.++++++++          ++.++.|++|.+                       .+
T Consensus        22 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~----------~v~~~~vd~d~~-----------------------~~   68 (142)
T 1qgv_A           22 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKN----------FAVIYLVDITEV-----------------------PD   68 (142)
T ss_dssp             SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTT----------TEEEEEEETTTC-----------------------CT
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC----------CeEEEEEccccC-----------------------HH
Confidence            479999999999999999999999999998864          389999998855                       45


Q ss_pred             HHHhcCcCccceEEEECCCCcEEec
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTK  329 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~  329 (428)
                      +++.|+|.++||++++ ++|+++..
T Consensus        69 ~~~~~~i~~~Pt~~~~-~~G~~v~~   92 (142)
T 1qgv_A           69 FNKMYELYDPCTVMFF-FRNKHIMI   92 (142)
T ss_dssp             TTTSSCSCSSCEEEEE-ETTEEEEE
T ss_pred             HHHHcCCCCCCEEEEE-ECCcEEEE
Confidence            7889999999999999 68888764

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.44  E-value=1.4e-13  Score=115.59  Aligned_cols=94  Identities=17%  Similarity=0.282  Sum_probs=70.2

Q ss_pred             ecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccC
Q 014225          219 VPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFG  298 (428)
Q Consensus       219 v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~  298 (428)
                      -.+++.+||+++|+||++||++|+.+.|.|.++.+++            ++.++.|++|..                   
T Consensus        33 ~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~------------~v~~~~vd~~~~-------------------   81 (133)
T 3cxg_A           33 QVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY------------YVTLVDIDVDIH-------------------   81 (133)
T ss_dssp             HHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE------------ECEEEEEETTTC-------------------
T ss_pred             HHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc------------CEEEEEEeccch-------------------
Confidence            3456667899999999999999999999998876554            267777777654                   


Q ss_pred             CcchhHHHHhcCcCccceEEEE-CCCCc--EEeccccchhhcccccCCCCChHHHHHHHHHHHHHHh
Q 014225          299 DPTIKELTKYFDVQGIPCLVII-GPEGK--TVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAK  362 (428)
Q Consensus       299 ~d~~~~~~~~~~v~~~P~~~li-d~~G~--i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~  362 (428)
                          .++++.|+|.++||++++ |++|+  ++.+..       |.     +   .++|.+.|++++.
T Consensus        82 ----~~l~~~~~v~~~Pt~~~~~~~~g~g~~~~~~~-------G~-----~---~~~l~~~l~~~l~  129 (133)
T 3cxg_A           82 ----PKLNDQHNIKALPTFEFYFNLNNEWVLVHTVE-------GA-----N---QNDIEKAFQKYCL  129 (133)
T ss_dssp             ----HHHHHHTTCCSSSEEEEEEEETTEEEEEEEEE-------SC-----C---HHHHHHHHHHHSE
T ss_pred             ----HHHHHhcCCCCCCEEEEEEecCCCeEEEEEEc-------CC-----C---HHHHHHHHHHHHH
Confidence                678999999999999999 45666  776632       21     2   2567777776654

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.43  E-value=3.4e-13  Score=107.52  Aligned_cols=73  Identities=25%  Similarity=0.432  Sum_probs=63.8

Q ss_pred             ccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcch
Q 014225          223 SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI  302 (428)
Q Consensus       223 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~  302 (428)
                      +.++++++|+||++||++|+.+.|.+.++.++++           ++.++.|++|..                       
T Consensus        17 ~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-----------~~~~~~vd~~~~-----------------------   62 (105)
T 3m9j_A           17 AAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-----------NVIFLEVDVDDC-----------------------   62 (105)
T ss_dssp             HTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHST-----------TSEEEEEETTTC-----------------------
T ss_pred             hcCCCeEEEEEECCCChhhHHHHHHHHHHHHHcc-----------CeEEEEEEhhhh-----------------------
Confidence            3468999999999999999999999999988774           478898988755                       


Q ss_pred             hHHHHhcCcCccceEEEECCCCcEEecc
Q 014225          303 KELTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       303 ~~~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      ..+++.|++.++|+++++ ++|+++.+.
T Consensus        63 ~~~~~~~~v~~~Pt~~~~-~~g~~~~~~   89 (105)
T 3m9j_A           63 QDVASESEVKSMPTFQFF-KKGQKVGEF   89 (105)
T ss_dssp             HHHHHHTTCCBSSEEEEE-ETTEEEEEE
T ss_pred             HHHHHHcCCCcCcEEEEE-ECCeEEEEE
Confidence            678999999999999999 889888764

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.43  E-value=4.7e-13  Score=108.13  Aligned_cols=71  Identities=17%  Similarity=0.377  Sum_probs=62.4

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      +++++|+||++||++|+.+.|.|.++.+++.+          ++.++.|++|.+                       .++
T Consensus        24 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~~~vd~~~~-----------------------~~~   70 (112)
T 1ep7_A           24 HKPIVVDFTATWCGPCKMIAPLFETLSNDYAG----------KVIFLKVDVDAV-----------------------AAV   70 (112)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT----------TSEEEEEETTTT-----------------------HHH
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHcCC----------CeEEEEEECCch-----------------------HHH
Confidence            78899999999999999999999999988763          488999988754                       678


Q ss_pred             HHhcCcCccceEEEECCCCcEEecc
Q 014225          306 TKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       306 ~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      ++.|+|.++|+++++ ++|+++.+.
T Consensus        71 ~~~~~v~~~Pt~~~~-~~G~~~~~~   94 (112)
T 1ep7_A           71 AEAAGITAMPTFHVY-KDGVKADDL   94 (112)
T ss_dssp             HHHHTCCBSSEEEEE-ETTEEEEEE
T ss_pred             HHHcCCCcccEEEEE-ECCeEEEEE
Confidence            999999999998877 899998763

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.43  E-value=6.1e-13  Score=114.76  Aligned_cols=90  Identities=16%  Similarity=0.340  Sum_probs=73.2

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+||++||++|+.+.|.|+++++++.++          +.++.|++|.+                       ..
T Consensus        63 ~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~----------v~~~~vd~~~~-----------------------~~  109 (155)
T 2ppt_A           63 DDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQ----------VRLAKIDTQAH-----------------------PA  109 (155)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT----------CEEEEEETTTS-----------------------TH
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCC----------EEEEEEeCCcc-----------------------HH
Confidence            5789999999999999999999999999998654          88999998855                       57


Q ss_pred             HHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHh
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAK  362 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~  362 (428)
                      +++.|+|.++|+++++ ++|+++.+..+       .    .+   .++|.+.|++++.
T Consensus       110 l~~~~~i~~~Pt~~~~-~~G~~~~~~~G-------~----~~---~~~l~~~l~~~l~  152 (155)
T 2ppt_A          110 VAGRHRIQGIPAFILF-HKGRELARAAG-------A----RP---ASELVGFVRGKLG  152 (155)
T ss_dssp             HHHHTTCCSSSEEEEE-ETTEEEEEEES-------C----CC---HHHHHHHHHHHHC
T ss_pred             HHHHcCCCcCCEEEEE-eCCeEEEEecC-------C----CC---HHHHHHHHHHHhc
Confidence            8999999999999999 89999876432       1    12   2556666666654

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=7.3e-13  Score=109.65  Aligned_cols=69  Identities=17%  Similarity=0.331  Sum_probs=60.6

Q ss_pred             cEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHH
Q 014225          227 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT  306 (428)
Q Consensus       227 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  306 (428)
                      +.++|+||++||++|+.+.|.|.++++++++.         ++.++.|+++.+                       ..++
T Consensus        23 ~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~---------~v~~~~vd~~~~-----------------------~~~~   70 (126)
T 1x5e_A           23 GDWMIEFYAPWCPACQNLQPEWESFAEWGEDL---------EVNIAKVDVTEQ-----------------------PGLS   70 (126)
T ss_dssp             SEEEEEEECSSCHHHHHHHHHHHHHHHHHGGG---------TCEEEEEETTTC-----------------------HHHH
T ss_pred             CCEEEEEECCCCHHHHHHhHHHHHHHHHhccC---------CeEEEEEECcCC-----------------------HHHH
Confidence            34899999999999999999999999998754         589999988855                       5689


Q ss_pred             HhcCcCccceEEEECCCCcEEe
Q 014225          307 KYFDVQGIPCLVIIGPEGKTVT  328 (428)
Q Consensus       307 ~~~~v~~~P~~~lid~~G~i~~  328 (428)
                      +.|+|.++||++++ ++|++..
T Consensus        71 ~~~~v~~~Pt~~~~-~~G~~~~   91 (126)
T 1x5e_A           71 GRFIINALPTIYHC-KDGEFRR   91 (126)
T ss_dssp             HHTTCCSSSEEEEE-ETTEEEE
T ss_pred             HHcCCcccCEEEEE-eCCeEEE
Confidence            99999999999999 8999643

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.43  E-value=1.6e-12  Score=107.92  Aligned_cols=86  Identities=12%  Similarity=0.111  Sum_probs=67.0

Q ss_pred             CCCCCceeccccc-CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcC
Q 014225          212 GHPPDEKVPVSSL-VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTM  290 (428)
Q Consensus       212 ~~~g~~~v~l~~~-~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~  290 (428)
                      .+++. .+.-.-. .+++++|+||++||++|+.+.|.|.++++.+...     ....++.++.|+++.+           
T Consensus        19 ~l~~~-~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~-----~~~~~v~~~~vd~~~~-----------   81 (127)
T 3h79_A           19 ELTDE-TFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQK-----RNHLTFVAARIDGEKY-----------   81 (127)
T ss_dssp             ECCTT-THHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTS-----TTTTTEEEEEEETTTC-----------
T ss_pred             ECChh-hHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhc-----ccCCCeEEEEEEcccc-----------
Confidence            44555 4432222 4799999999999999999999999999988632     0124688888888855           


Q ss_pred             CccccccCCcchhHHHHhcCcCccceEEEECCCCcE
Q 014225          291 PWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKT  326 (428)
Q Consensus       291 ~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i  326 (428)
                                  .++++.|+|.++||++++++++++
T Consensus        82 ------------~~l~~~~~v~~~Pt~~~~~~g~~~  105 (127)
T 3h79_A           82 ------------PDVIERMRVSGFPTMRYYTRIDKQ  105 (127)
T ss_dssp             ------------HHHHHHTTCCSSSEEEEECSSCSS
T ss_pred             ------------HhHHHhcCCccCCEEEEEeCCCCC
Confidence                        679999999999999999766653

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.43  E-value=6.1e-13  Score=110.42  Aligned_cols=88  Identities=19%  Similarity=0.345  Sum_probs=72.0

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+||++||++|+.+.|.|.++++++.           ++.++.|++|.+                       .+
T Consensus        36 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-----------~v~~~~vd~d~~-----------------------~~   81 (125)
T 1r26_A           36 EDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-----------TVKFAKVDADNN-----------------------SE   81 (125)
T ss_dssp             SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-----------TSEEEEEETTTC-----------------------HH
T ss_pred             cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC-----------CCEEEEEECCCC-----------------------HH
Confidence            57899999999999999999999999988873           478999998865                       67


Q ss_pred             HHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHh
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAK  362 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~  362 (428)
                      +++.|+|.++||++++ ++|+++.+..       |     .+.   ++|.+.|+++++
T Consensus        82 l~~~~~v~~~Pt~~i~-~~G~~~~~~~-------G-----~~~---~~l~~~l~~~l~  123 (125)
T 1r26_A           82 IVSKCRVLQLPTFIIA-RSGKMLGHVI-------G-----ANP---GMLRQKLRDIIK  123 (125)
T ss_dssp             HHHHTTCCSSSEEEEE-ETTEEEEEEE-------S-----SCH---HHHHHHHHHHHH
T ss_pred             HHHHcCCCcccEEEEE-eCCeEEEEEe-------C-----CCH---HHHHHHHHHHhc
Confidence            8999999999998888 8999887632       2     122   567777777665

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.43  E-value=3.8e-13  Score=112.38  Aligned_cols=83  Identities=19%  Similarity=0.317  Sum_probs=64.0

Q ss_pred             CCCCCceeccccc-CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcC
Q 014225          212 GHPPDEKVPVSSL-VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTM  290 (428)
Q Consensus       212 ~~~g~~~v~l~~~-~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~  290 (428)
                      ..++. .+..... .+++++|+||++||++|+.+.|.|.+++++++..        .++.++.|+++.+           
T Consensus        11 ~l~~~-~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~--------~~~~~~~vd~~~~-----------   70 (133)
T 2dj3_A           11 VVVGK-TFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQ--------KDLVIAKMDATAN-----------   70 (133)
T ss_dssp             ECCTT-TCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTS--------SSEEEEEECTTTS-----------
T ss_pred             EEcCC-CHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCC--------CCEEEEEecCCcC-----------
Confidence            45555 4443333 4899999999999999999999999999998742        2577777776643           


Q ss_pred             CccccccCCcchhHHHHhcCcCccceEEEECCCCcE
Q 014225          291 PWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKT  326 (428)
Q Consensus       291 ~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i  326 (428)
                                  ..+++.|+|.++||+++++++|++
T Consensus        71 ------------~~~~~~~~v~~~Pt~~~~~~g~~~   94 (133)
T 2dj3_A           71 ------------DITNDQYKVEGFPTIYFAPSGDKK   94 (133)
T ss_dssp             ------------CCCCSSCCCSSSSEEEEECTTCTT
T ss_pred             ------------HHHHhhcCCCcCCEEEEEeCCCcc
Confidence                        345678999999999999877653

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.43  E-value=5.5e-13  Score=114.65  Aligned_cols=90  Identities=11%  Similarity=0.283  Sum_probs=73.5

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      ++++++|+||++||++|+.+.|.|.++++++.           ++.++.|++|.+                       ..
T Consensus        31 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-----------~v~~~~vd~~~~-----------------------~~   76 (153)
T 2wz9_A           31 AKSLLVVHFWAPWAPQCAQMNEVMAELAKELP-----------QVSFVKLEAEGV-----------------------PE   76 (153)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEETTTS-----------------------HH
T ss_pred             CCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC-----------CeEEEEEECCCC-----------------------HH
Confidence            48899999999999999999999999988863           588999998865                       57


Q ss_pred             HHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhcC
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNL  364 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~  364 (428)
                      +++.|+|.++|++++++ +|+++.+..+            ...   ++|.+.|++++...
T Consensus        77 l~~~~~v~~~Pt~~~~~-~G~~~~~~~G------------~~~---~~l~~~i~~~l~~~  120 (153)
T 2wz9_A           77 VSEKYEISSVPTFLFFK-NSQKIDRLDG------------AHA---PELTKKVQRHASSG  120 (153)
T ss_dssp             HHHHTTCCSSSEEEEEE-TTEEEEEEES------------SCH---HHHHHHHHHHSCTT
T ss_pred             HHHHcCCCCCCEEEEEE-CCEEEEEEeC------------CCH---HHHHHHHHHHhccc
Confidence            89999999999999997 9999876432            122   45777777776543

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.42  E-value=2.2e-12  Score=126.26  Aligned_cols=162  Identities=16%  Similarity=0.171  Sum_probs=105.0

Q ss_pred             CCCEEEEEEecCCChhhhhhHHH-------HHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHH
Q 014225           60 EGKVTALYFSANWYPPCGNFTGV-------LVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKK  132 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~-------l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~  132 (428)
                      ++++++|+|||+||+ |+.++|.       +.++++.+++.+  +.++.|++|..                        .
T Consensus        27 ~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~--v~~~~Vd~~~~------------------------~   79 (350)
T 1sji_A           27 KYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKD--IGFVMVDAKKE------------------------A   79 (350)
T ss_dssp             TCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSS--EEEEEEETTTT------------------------H
T ss_pred             hCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcC--cEEEEEeCCCC------------------------H
Confidence            478999999999999 9999999       899999988764  88888766543                        6


Q ss_pred             HHHhhcCCCCCceEEEEcCCCCCCCcccccchhhhhhcccCccccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCcccC
Q 014225          133 ALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLG  212 (428)
Q Consensus       133 ~l~~~~~v~~~P~~~lid~~~~dG~i~~~~~~~~i~~~g~~~~p~t~~~~~~l~~~~~~~~~~~~~~~~~g~~~p~f~l~  212 (428)
                      .+++.|+|.++||++++.    +|++....        |.    .+..   .+...         +.+.++   |... .
T Consensus        80 ~l~~~~~v~~~Pt~~~~~----~g~~~~~~--------G~----~~~~---~l~~~---------i~~~~~---~~~~-~  127 (350)
T 1sji_A           80 KLAKKLGFDEEGSLYVLK----GDRTIEFD--------GE----FAAD---VLVEF---------LLDLIE---DPVE-I  127 (350)
T ss_dssp             HHHHHHTCCSTTEEEEEE----TTEEEEEC--------SC----CCHH---HHHHH---------HHTTSS---CSEE-E
T ss_pred             HHHHhcCCCccceEEEEE----CCcEEEec--------CC----CCHH---HHHHH---------HHHhcC---Ccce-e
Confidence            789999999999999996    68633111        11    1111   11111         111111   1111 1


Q ss_pred             CCCCceecccc---cCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhc
Q 014225          213 HPPDEKVPVSS---LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGT  289 (428)
Q Consensus       213 ~~g~~~v~l~~---~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~  289 (428)
                      .+..  -.+.+   ...++++|.|+++||.   ...+.+.+++..+++.          +.+..++   +          
T Consensus       128 l~~~--~~~~~~~~~~~~~~vv~ff~~~~~---~~~~~~~~~A~~~~~~----------~~f~~~~---~----------  179 (350)
T 1sji_A          128 INSK--LEVQAFERIEDQIKLIGFFKSEES---EYYKAFEEAAEHFQPY----------IKFFATF---D----------  179 (350)
T ss_dssp             CCSH--HHHHHHHHCCSSCEEEEECSCTTS---HHHHHHHHHHHHTTTT----------SEEEEEC---C----------
T ss_pred             ccch--HHHHHHhccCCCcEEEEEECCCCc---HHHHHHHHHHHhhccC----------cEEEEEC---C----------
Confidence            1100  00111   1235678889998864   4457788888888654          5554442   2          


Q ss_pred             CCccccccCCcchhHHHHhcCcCccceEEEECC
Q 014225          290 MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGP  322 (428)
Q Consensus       290 ~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~  322 (428)
                                   .++++.|++. .|+++++.+
T Consensus       180 -------------~~~~~~~~v~-~p~i~~~~~  198 (350)
T 1sji_A          180 -------------KGVAKKLSLK-MNEVDFYEP  198 (350)
T ss_dssp             -------------HHHHHHHTCC-TTCEEEECT
T ss_pred             -------------HHHHHHcCCC-CCcEEEEeC
Confidence                         5688899999 999999966

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.41  E-value=9.6e-13  Score=111.31  Aligned_cols=72  Identities=18%  Similarity=0.240  Sum_probs=64.0

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+||++||++|+.+.|.|.+++++++++          +.++.|++|.+                       ..
T Consensus        23 ~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~----------v~~~~vd~~~~-----------------------~~   69 (140)
T 3hz4_A           23 SKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSS----------AVFGRINIATN-----------------------PW   69 (140)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT----------SEEEEEETTTC-----------------------HH
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCc----------eEEEEEECCcC-----------------------Hh
Confidence            3789999999999999999999999999998754          88999998865                       67


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      +++.|+|.++||++++ ++|+++.+.
T Consensus        70 l~~~~~v~~~Pt~~~~-~~G~~~~~~   94 (140)
T 3hz4_A           70 TAEKYGVQGTPTFKFF-CHGRPVWEQ   94 (140)
T ss_dssp             HHHHHTCCEESEEEEE-ETTEEEEEE
T ss_pred             HHHHCCCCcCCEEEEE-eCCcEEEEE
Confidence            8999999999999999 899988764

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.41  E-value=1.7e-12  Score=124.20  Aligned_cols=67  Identities=28%  Similarity=0.520  Sum_probs=59.8

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+++++|+|||+||++|+.+.|.+.++++++++.   +.++.|++|.+..                      ..+++.|+
T Consensus        34 ~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~---~~~~~v~~d~~~~----------------------~~l~~~~~   88 (298)
T 3ed3_A           34 TNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGV---VQVAAVNCDLNKN----------------------KALCAKYD   88 (298)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTSTTT----------------------HHHHHHTT
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCC---cEEEEEEccCccC----------------------HHHHHhCC
Confidence            4789999999999999999999999999999764   8889888875433                      78999999


Q ss_pred             CCCCceEEEEcC
Q 014225          140 IEGIPCLVVLQP  151 (428)
Q Consensus       140 v~~~P~~~lid~  151 (428)
                      |.++|++++++.
T Consensus        89 I~~~Pt~~~~~~  100 (298)
T 3ed3_A           89 VNGFPTLMVFRP  100 (298)
T ss_dssp             CCBSSEEEEEEC
T ss_pred             CCccceEEEEEC
Confidence            999999999994

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.41  E-value=8.8e-13  Score=108.38  Aligned_cols=88  Identities=24%  Similarity=0.419  Sum_probs=71.1

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+||++||++|+.+.|.|.++.++++           ++.++.|++|.+                       .+
T Consensus        33 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-----------~~~~~~vd~~~~-----------------------~~   78 (122)
T 2vlu_A           33 AKKLVVIDFTASWCGPCRIMAPVFADLAKKFP-----------NAVFLKVDVDEL-----------------------KP   78 (122)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEETTTC-----------------------HH
T ss_pred             cCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-----------CcEEEEEECCCC-----------------------HH
Confidence            57899999999999999999999999988764           478899988865                       67


Q ss_pred             HHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHh
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAK  362 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~  362 (428)
                      +++.|+|.++|+++++ ++|+++.+..+.           .    .++|.+.|+++++
T Consensus        79 ~~~~~~v~~~Pt~~~~-~~G~~~~~~~G~-----------~----~~~l~~~l~~~l~  120 (122)
T 2vlu_A           79 IAEQFSVEAMPTFLFM-KEGDVKDRVVGA-----------I----KEELTAKVGLHAA  120 (122)
T ss_dssp             HHHHTTCCSSSEEEEE-ETTEEEEEEESS-----------C----HHHHHHHHHHHHS
T ss_pred             HHHHcCCCcccEEEEE-eCCEEEEEEeCc-----------C----HHHHHHHHHHHhc
Confidence            8999999999998888 899998764221           1    3566777776654

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.41  E-value=4.1e-13  Score=110.38  Aligned_cols=97  Identities=14%  Similarity=0.199  Sum_probs=72.9

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+||++||++|+.+.|.|.+++++++++          +.++.|+++.+                       .+
T Consensus        20 ~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~----------~~~~~vd~~~~-----------------------~~   66 (122)
T 3aps_A           20 GKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGK----------VRAGKVDCQAY-----------------------PQ   66 (122)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT----------CEEEEEETTTC-----------------------HH
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC----------eEEEEEeCcCC-----------------------HH
Confidence            4689999999999999999999999999988643          88999988865                       57


Q ss_pred             HHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhcCC
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLP  365 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~~  365 (428)
                      +++.|+|.++|++++++++|++....|..    .|    +.+   .++|.+.|+++++..+
T Consensus        67 ~~~~~~v~~~Pt~~~~~~~~~~~~~~g~~----~~----~~~---~~~l~~~l~~~l~~~~  116 (122)
T 3aps_A           67 TCQKAGIKAYPSVKLYQYERAKKSIWEEQ----IN----SRD---AKTIAALIYGKLETLQ  116 (122)
T ss_dssp             HHHHTTCCSSSEEEEEEEEGGGTEEEEEE----EC----CSC---HHHHHHHHHHHHHCC-
T ss_pred             HHHHcCCCccceEEEEeCCCccceeeccc----cC----cCC---HHHHHHHHHHHHHhhh
Confidence            88999999999999998777632221110    01    122   3567777777776543

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.41  E-value=3.5e-13  Score=122.24  Aligned_cols=113  Identities=15%  Similarity=0.153  Sum_probs=86.3

Q ss_pred             cCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHH
Q 014225          204 NHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTS  282 (428)
Q Consensus       204 ~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~  282 (428)
                      ...++..+ +.++. .+......|++++|+||++||++|+.+.|.|.++++++++.          +.++.|+++.+   
T Consensus        92 ~~~~~~~v~~l~~~-~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~----------v~~~~vd~~~~---  157 (210)
T 3apq_A           92 IYDDDPEIITLERR-EFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGL----------LRIGAVNCGDD---  157 (210)
T ss_dssp             TTTTCTTSEECCHH-HHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTT----------BEEEEEETTTC---
T ss_pred             ccCCCCceEEecHH-HHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCc----------eEEEEEECCcc---
Confidence            33344555 55665 55544467899999999999999999999999999988643          88999998865   


Q ss_pred             HHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHh
Q 014225          283 FESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAK  362 (428)
Q Consensus       283 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~  362 (428)
                                          ..+++.|+|.++||++++ ++|+++.+..+           ..+   .++|.+.|++++.
T Consensus       158 --------------------~~l~~~~~v~~~Pt~~~~-~~G~~~~~~~G-----------~~~---~~~l~~~i~~~l~  202 (210)
T 3apq_A          158 --------------------RMLCRMKGVNSYPSLFIF-RSGMAAVKYNG-----------DRS---KESLVAFAMQHVR  202 (210)
T ss_dssp             --------------------HHHHHHTTCCSSSEEEEE-CTTSCCEECCS-----------CCC---HHHHHHHHHHHHH
T ss_pred             --------------------HHHHHHcCCCcCCeEEEE-ECCCceeEecC-----------CCC---HHHHHHHHHHhCc
Confidence                                578999999999999999 99988766432           112   3567788887776


Q ss_pred             cCC
Q 014225          363 NLP  365 (428)
Q Consensus       363 ~~~  365 (428)
                      ...
T Consensus       203 ~~~  205 (210)
T 3apq_A          203 STV  205 (210)
T ss_dssp             CCS
T ss_pred             ccc
Confidence            543

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.41  E-value=1.4e-12  Score=104.24  Aligned_cols=72  Identities=29%  Similarity=0.529  Sum_probs=64.2

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+||++||++|+.+.|.|.++.+++++          ++.++.|+++.+                       ..
T Consensus        19 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~----------~~~~~~v~~~~~-----------------------~~   65 (107)
T 2i4a_A           19 ASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAG----------KVTVAKVNIDDN-----------------------PE   65 (107)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTT----------SEEEEEEETTTC-----------------------CH
T ss_pred             CCCEEEEEEECCCChhHHHHhHHHHHHHHHhCC----------cEEEEEEECCCC-----------------------HH
Confidence            578999999999999999999999999998864          489999998855                       57


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      +++.|++.++|+++++ ++|+++.+.
T Consensus        66 ~~~~~~v~~~Pt~~~~-~~G~~~~~~   90 (107)
T 2i4a_A           66 TPNAYQVRSIPTLMLV-RDGKVIDKK   90 (107)
T ss_dssp             HHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred             HHHhcCCCccCEEEEE-eCCEEEEEe
Confidence            8999999999999999 999998764

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.41  E-value=1e-12  Score=104.78  Aligned_cols=73  Identities=27%  Similarity=0.561  Sum_probs=63.7

Q ss_pred             cCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchh
Q 014225          224 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK  303 (428)
Q Consensus       224 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~  303 (428)
                      .++++++|+||++||++|+.+.|.+.++.++++.          ++.++.|++|.+                       .
T Consensus        18 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~~~v~~~~~-----------------------~   64 (106)
T 1xwb_A           18 ASGKLVVLDFFATWCGPCKMISPKLVELSTQFAD----------NVVVLKVDVDEC-----------------------E   64 (106)
T ss_dssp             HTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT----------TEEEEEEETTTC-----------------------H
T ss_pred             cCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCC----------CeEEEEEeccch-----------------------H
Confidence            4689999999999999999999999999988753          589999998855                       6


Q ss_pred             HHHHhcCcCccceEEEECCCCcEEecc
Q 014225          304 ELTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       304 ~~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      .+++.|++.++|+++++ ++|+++.+.
T Consensus        65 ~~~~~~~v~~~Pt~~~~-~~G~~~~~~   90 (106)
T 1xwb_A           65 DIAMEYNISSMPTFVFL-KNGVKVEEF   90 (106)
T ss_dssp             HHHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred             HHHHHcCCCcccEEEEE-cCCcEEEEE
Confidence            78999999999998877 899988764

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.41  E-value=2.2e-13  Score=118.91  Aligned_cols=77  Identities=17%  Similarity=0.172  Sum_probs=62.4

Q ss_pred             EecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHH
Q 014225           54 VKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKA  133 (428)
Q Consensus        54 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~  133 (428)
                      ..+++++||+++|+|||+|||||+.++|.|.+++++++    ++.++.|++|..                        ..
T Consensus        47 ~~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~----~v~~~~v~~d~~------------------------~~   98 (167)
T 1z6n_A           47 ERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP----NIELAIISKGRA------------------------ED   98 (167)
T ss_dssp             HHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT----TEEEEEECHHHH------------------------HH
T ss_pred             HHHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC----CcEEEEEECCCC------------------------HH
Confidence            34567789999999999999999999999999998864    288888866533                        44


Q ss_pred             HHhhcC---CCCCceEEEEcCCCCCCCcccc
Q 014225          134 LNRKFD---IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       134 l~~~~~---v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +++.|.   +.++|+++++++   +|+++.+
T Consensus        99 ~~~~~~~~~v~~iPt~i~~~~---~G~~~~~  126 (167)
T 1z6n_A           99 DLRQRLALERIAIPLVLVLDE---EFNLLGR  126 (167)
T ss_dssp             HTTTTTTCSSCCSSEEEEECT---TCCEEEE
T ss_pred             HHHHHHHcCCCCcCeEEEECC---CCCEEEE
Confidence            555564   899999999998   8887654

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.40  E-value=7e-13  Score=108.77  Aligned_cols=72  Identities=28%  Similarity=0.445  Sum_probs=62.9

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+||++||++|+.+.|.|.++++++ .          ++.++.|++|.+                       .+
T Consensus        22 ~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~----------~v~~~~vd~~~~-----------------------~~   67 (118)
T 2f51_A           22 APGLVLVDFFATWCGPCQRLGQILPSIAEAN-K----------DVTFIKVDVDKN-----------------------GN   67 (118)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHC-T----------TSEEEEEETTTC-----------------------HH
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-C----------CeEEEEEECCCC-----------------------HH
Confidence            4789999999999999999999999999887 2          588999998865                       67


Q ss_pred             HHHhcCcCccceEEEECC---CCcEEecc
Q 014225          305 LTKYFDVQGIPCLVIIGP---EGKTVTKQ  330 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~---~G~i~~~~  330 (428)
                      +++.|+|.++|++++++.   +|+++.+.
T Consensus        68 ~~~~~~i~~~Pt~~~~~~~~~~G~~~~~~   96 (118)
T 2f51_A           68 AADAYGVSSIPALFFVKKEGNEIKTLDQF   96 (118)
T ss_dssp             HHHHTTCCSSSEEEEEEEETTEEEEEEEE
T ss_pred             HHHhcCCCCCCEEEEEeCCCCcceEEEee
Confidence            899999999999999965   38888774

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.40  E-value=6.2e-13  Score=109.69  Aligned_cols=74  Identities=23%  Similarity=0.422  Sum_probs=62.3

Q ss_pred             ccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcch
Q 014225          223 SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI  302 (428)
Q Consensus       223 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~  302 (428)
                      +..|++++|+||++||++|+.+.|.+.+++++++           ++.++.|+++.+                      .
T Consensus        34 ~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-----------~~~~~~vd~~~~----------------------~   80 (124)
T 1faa_A           34 AAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL-----------DVIFLKLDCNQE----------------------N   80 (124)
T ss_dssp             HTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEECSST----------------------T
T ss_pred             hcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCC-----------CCEEEEEecCcc----------------------h
Confidence            3468999999999999999999999999988764           478888888732                      2


Q ss_pred             hHHHHhcCcCccceEEEECCCCcEEecc
Q 014225          303 KELTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       303 ~~~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      .++++.|+|.++||++++ ++|+++.+.
T Consensus        81 ~~~~~~~~v~~~Pt~~~~-~~G~~~~~~  107 (124)
T 1faa_A           81 KTLAKELGIRVVPTFKIL-KENSVVGEV  107 (124)
T ss_dssp             HHHHHHHCCSSSSEEEEE-ETTEEEEEE
T ss_pred             HHHHHHcCCCeeeEEEEE-eCCcEEEEE
Confidence            678999999999996665 899998764

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.40  E-value=1.4e-12  Score=103.90  Aligned_cols=72  Identities=19%  Similarity=0.425  Sum_probs=63.1

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+||++||++|+.+.|.+.+++++++++          +.++.|+++.+                       ..
T Consensus        17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~-----------------------~~   63 (105)
T 1fb6_A           17 SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK----------IAVYKLNTDEA-----------------------PG   63 (105)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT----------CEEEEEETTTC-----------------------HH
T ss_pred             CCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCc----------eEEEEEcCcch-----------------------HH
Confidence            4689999999999999999999999999888643          88999988855                       57


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      +++.|++.++|+++++ ++|+++.+.
T Consensus        64 ~~~~~~v~~~Pt~~~~-~~g~~~~~~   88 (105)
T 1fb6_A           64 IATQYNIRSIPTVLFF-KNGERKESI   88 (105)
T ss_dssp             HHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred             HHHhCCCCcccEEEEE-eCCeEEEEE
Confidence            8999999999999888 799998764

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.40  E-value=3.5e-13  Score=114.56  Aligned_cols=69  Identities=13%  Similarity=0.346  Sum_probs=60.2

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+++|||+|||+||+||+.+.|.|.++++++++.   +.++-|++|+.                        ..++..|+
T Consensus        40 ~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~---v~f~kVDVDe~------------------------~e~a~~y~   92 (160)
T 2av4_A           40 DERLVCIRFGHDYDPDCMKMDELLYKVADDIKNF---CVIYLVDITEV------------------------PDFNTMYE   92 (160)
T ss_dssp             SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTC------------------------CTTTTTTT
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCC---cEEEEEECCCC------------------------HHHHHHcC
Confidence            4689999999999999999999999999999765   78888877765                        56788899


Q ss_pred             CCCCceEEEEcCCCCCCCcc
Q 014225          140 IEGIPCLVVLQPYDDKDDAT  159 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~  159 (428)
                      |.++||++++.    +|+.+
T Consensus        93 V~siPT~~fFk----~G~~v  108 (160)
T 2av4_A           93 LYDPVSVMFFY----RNKHM  108 (160)
T ss_dssp             CCSSEEEEEEE----TTEEE
T ss_pred             CCCCCEEEEEE----CCEEE
Confidence            99999999988    57665

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.40  E-value=5.3e-13  Score=109.01  Aligned_cols=73  Identities=25%  Similarity=0.481  Sum_probs=62.4

Q ss_pred             cccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcc
Q 014225          222 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT  301 (428)
Q Consensus       222 ~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~  301 (428)
                      ++.+|++++|+||++||++|+.+.|.+.++++++  .          +.++.|++|..                      
T Consensus        29 ~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~--~----------~~~~~vd~~~~----------------------   74 (117)
T 2xc2_A           29 EQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY--D----------AIFVKVDVDKL----------------------   74 (117)
T ss_dssp             HHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS--S----------SEEEEEETTTS----------------------
T ss_pred             HhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc--C----------cEEEEEECCcc----------------------
Confidence            3446899999999999999999999999988766  3          68888888754                      


Q ss_pred             hhHHHHhcCcCccceEEEECCCCcEEecc
Q 014225          302 IKELTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       302 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                       .++++.|+|.++|+++++ ++|+++.+.
T Consensus        75 -~~~~~~~~v~~~Pt~~~~-~~G~~~~~~  101 (117)
T 2xc2_A           75 -EETARKYNISAMPTFIAI-KNGEKVGDV  101 (117)
T ss_dssp             -HHHHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred             -HHHHHHcCCCccceEEEE-eCCcEEEEE
Confidence             678999999999998888 899988764

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.39  E-value=5.8e-13  Score=109.68  Aligned_cols=73  Identities=21%  Similarity=0.421  Sum_probs=64.6

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+||++||++|+.+.|.|.++.+++++.         ++.++.|++|.+                       .+
T Consensus        32 ~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~---------~v~~~~vd~d~~-----------------------~~   79 (121)
T 2j23_A           32 GDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGD---------KVGFYKVDVDEQ-----------------------SQ   79 (121)
T ss_dssp             SSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHH---------HSEEEEEETTTC-----------------------HH
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCC---------cEEEEEEECcCC-----------------------HH
Confidence            5789999999999999999999999999988765         588999998865                       67


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      +++.|+|.++|+++++ ++|+++.+.
T Consensus        80 ~~~~~~v~~~Pt~~~~-~~G~~~~~~  104 (121)
T 2j23_A           80 IAQEVGIRAMPTFVFF-KNGQKIDTV  104 (121)
T ss_dssp             HHHHHTCCSSSEEEEE-ETTEEEEEE
T ss_pred             HHHHcCCCcccEEEEE-ECCeEEeeE
Confidence            8899999999999999 799988763

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.39  E-value=2.4e-12  Score=101.97  Aligned_cols=71  Identities=17%  Similarity=0.443  Sum_probs=62.6

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      ++++++|+||++||++|+.+.|.+.++.+.++           ++.++.|++|.+                       .+
T Consensus        15 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-----------~~~~~~v~~~~~-----------------------~~   60 (104)
T 2e0q_A           15 SHEIAVVDFWAEWCAPCLILAPIIEELAEDYP-----------QVGFGKLNSDEN-----------------------PD   60 (104)
T ss_dssp             HSSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEETTTC-----------------------HH
T ss_pred             cCCcEEEEEECCCChhHHHHhHHHHHHHHHcC-----------CceEEEEECCCC-----------------------HH
Confidence            57899999999999999999999999888764           378999998855                       67


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      +++.|++.++|+++++ ++|+++.+.
T Consensus        61 ~~~~~~v~~~Pt~~~~-~~g~~~~~~   85 (104)
T 2e0q_A           61 IAARYGVMSLPTVIFF-KDGEPVDEI   85 (104)
T ss_dssp             HHHHTTCCSSCEEEEE-ETTEEEEEE
T ss_pred             HHHhCCccccCEEEEE-ECCeEhhhc
Confidence            8999999999999999 899988764

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.39  E-value=1.4e-12  Score=104.42  Aligned_cols=72  Identities=24%  Similarity=0.454  Sum_probs=63.7

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+||++||++|+.+.|.|.++.+++.+          ++.++.|++|.+                       ..
T Consensus        17 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~~~v~~~~~-----------------------~~   63 (109)
T 2yzu_A           17 QHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEG----------KLLVAKLDVDEN-----------------------PK   63 (109)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBT----------TBEEEEEETTTC-----------------------HH
T ss_pred             CCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhC----------ceEEEEEECCCC-----------------------Hh
Confidence            478999999999999999999999999988864          388999998865                       57


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      +++.|++.++|+++++ ++|+++.+.
T Consensus        64 ~~~~~~v~~~Pt~~~~-~~g~~~~~~   88 (109)
T 2yzu_A           64 TAMRYRVMSIPTVILF-KDGQPVEVL   88 (109)
T ss_dssp             HHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred             HHHhCCCCcCCEEEEE-eCCcEeeeE
Confidence            8999999999999999 999988763

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.39  E-value=1.8e-12  Score=104.68  Aligned_cols=72  Identities=25%  Similarity=0.540  Sum_probs=63.0

Q ss_pred             cCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchh
Q 014225          224 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK  303 (428)
Q Consensus       224 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~  303 (428)
                      ..|++++|+||++||++|+.+.|.|.++.+++.           ++.++.|++|..                       .
T Consensus        24 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-----------~v~~~~v~~~~~-----------------------~   69 (113)
T 1ti3_A           24 GSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-----------NVTFLKVDVDEL-----------------------K   69 (113)
T ss_dssp             TSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS-----------SEEEEEEETTTC-----------------------H
T ss_pred             hcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC-----------CcEEEEEEcccc-----------------------H
Confidence            358899999999999999999999999888764           588999998755                       6


Q ss_pred             HHHHhcCcCccceEEEECCCCcEEecc
Q 014225          304 ELTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       304 ~~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      .+++.|++.++|+++++ ++|+++.+.
T Consensus        70 ~~~~~~~v~~~Pt~~~~-~~G~~~~~~   95 (113)
T 1ti3_A           70 AVAEEWNVEAMPTFIFL-KDGKLVDKT   95 (113)
T ss_dssp             HHHHHHHCSSTTEEEEE-ETTEEEEEE
T ss_pred             HHHHhCCCCcccEEEEE-eCCEEEEEE
Confidence            78899999999999999 899998764

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.39  E-value=1.3e-12  Score=103.78  Aligned_cols=72  Identities=29%  Similarity=0.610  Sum_probs=62.6

Q ss_pred             cCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchh
Q 014225          224 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK  303 (428)
Q Consensus       224 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~  303 (428)
                      ..+++++|+||++||++|+.+.|.|.++.+++.           ++.++.|++|..                       .
T Consensus        17 ~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~-----------~~~~~~v~~~~~-----------------------~   62 (104)
T 2vim_A           17 NKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-----------EVEFAKVDVDQN-----------------------E   62 (104)
T ss_dssp             TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEETTTC-----------------------H
T ss_pred             cCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC-----------CCEEEEEeccCC-----------------------H
Confidence            467899999999999999999999999888764           478999998855                       5


Q ss_pred             HHHHhcCcCccceEEEECCCCcEEecc
Q 014225          304 ELTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       304 ~~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      ++++.|++.++|+++++ ++|+++.+.
T Consensus        63 ~~~~~~~v~~~Pt~~~~-~~g~~~~~~   88 (104)
T 2vim_A           63 EAAAKYSVTAMPTFVFI-KDGKEVDRF   88 (104)
T ss_dssp             HHHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred             HHHHHcCCccccEEEEE-eCCcEEEEE
Confidence            78899999999998888 699988764

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=99.08  E-value=3.5e-14  Score=118.30  Aligned_cols=102  Identities=21%  Similarity=0.329  Sum_probs=77.1

Q ss_pred             eecccccCCcEEEEEEeccCChhHHhhhHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccc
Q 014225          218 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLA  294 (428)
Q Consensus       218 ~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~  294 (428)
                      .+.+....||+++|+||++||++|+.+.|.+   .++.+.+..+          +.++.|+++.+.              
T Consensus        11 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~----------~~~~~vd~~~~~--------------   66 (130)
T 2lst_A           11 ALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEAR----------FVVASVSVDTPE--------------   66 (130)
Confidence            6777778899999999999999999999999   8888776543          677777775331              


Q ss_pred             cccCCcchhHHHHhcCcCccceEEEECC-CCcE--EeccccchhhcccccCCCCChHHHHHHHHHHHHHHhcC
Q 014225          295 LPFGDPTIKELTKYFDVQGIPCLVIIGP-EGKT--VTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNL  364 (428)
Q Consensus       295 ~~~~~d~~~~~~~~~~v~~~P~~~lid~-~G~i--~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~  364 (428)
                             ...+++.|+|.++|+++++|+ +|++  +.+..+.           .+   .++|.+.|++++.+.
T Consensus        67 -------~~~~~~~~~v~~~Pt~~~~d~~~G~~~~~~~~~G~-----------~~---~~~l~~~l~~~~~~~  118 (130)
T 2lst_A           67 -------GQELARRYRVPGTPTFVFLVPKAGAWEEVGRLFGS-----------RP---RAEFLKELRQVCVKG  118 (130)
Confidence                   367889999999999999996 5888  6653221           11   245666676666544

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.38  E-value=9.8e-13  Score=109.97  Aligned_cols=78  Identities=26%  Similarity=0.398  Sum_probs=66.1

Q ss_pred             CCCCEEEEEEecCCChhhhhhHHHHH--HHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHh
Q 014225           59 LEGKVTALYFSANWYPPCGNFTGVLV--DVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR  136 (428)
Q Consensus        59 ~~gk~vlv~F~a~wC~~C~~~~p~l~--~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~  136 (428)
                      .+||+++|+||++||++|+.+.|.|.  ++.+.++++   +.++.|+++..                   +..  ..+++
T Consensus        27 ~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~---~~~~~vd~~~~-------------------~~~--~~l~~   82 (133)
T 3fk8_A           27 RTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKH---FEVVKIDVGNF-------------------DRN--LELSQ   82 (133)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHH---CEEEEEECTTT-------------------TSS--HHHHH
T ss_pred             hcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCC---EEEEEEeCCcc-------------------cch--HHHHH
Confidence            46899999999999999999999999  999998764   88888887431                   111  68899


Q ss_pred             hcCC---CCCceEEEEcCCCCCCCcccccc
Q 014225          137 KFDI---EGIPCLVVLQPYDDKDDATLHDG  163 (428)
Q Consensus       137 ~~~v---~~~P~~~lid~~~~dG~i~~~~~  163 (428)
                      .|++   .++|+++++|+   +|+++....
T Consensus        83 ~~~v~~~~~~Pt~~~~d~---~G~~~~~~~  109 (133)
T 3fk8_A           83 AYGDPIQDGIPAVVVVNS---DGKVRYTTK  109 (133)
T ss_dssp             HTTCGGGGCSSEEEEECT---TSCEEEECC
T ss_pred             HhCCccCCccceEEEECC---CCCEEEEec
Confidence            9999   99999999999   999886643

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.38  E-value=1.7e-12  Score=105.81  Aligned_cols=71  Identities=25%  Similarity=0.512  Sum_probs=62.2

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      +|++++|+||++||++|+.+.|.|.++++++.           ++.++.|++|.+                       .+
T Consensus        29 ~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~-----------~v~~~~vd~~~~-----------------------~~   74 (114)
T 2oe3_A           29 QNDKLVIDFYATWCGPCKMMQPHLTKLIQAYP-----------DVRFVKCDVDES-----------------------PD   74 (114)
T ss_dssp             HCSEEEEEEECTTCHHHHHTHHHHHHHHHHCT-----------TSEEEEEETTTC-----------------------HH
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-----------CCEEEEEECCCC-----------------------HH
Confidence            47899999999999999999999999988764           378899988855                       57


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      +++.|+|.++|+++++ ++|+++.+.
T Consensus        75 l~~~~~v~~~Pt~~~~-~~G~~~~~~   99 (114)
T 2oe3_A           75 IAKECEVTAMPTFVLG-KDGQLIGKI   99 (114)
T ss_dssp             HHHHTTCCSBSEEEEE-ETTEEEEEE
T ss_pred             HHHHCCCCcccEEEEE-eCCeEEEEE
Confidence            8999999999999887 999998764

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.37  E-value=7.9e-13  Score=112.81  Aligned_cols=92  Identities=18%  Similarity=0.326  Sum_probs=75.2

Q ss_pred             cccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhc
Q 014225           39 ASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRAC  117 (428)
Q Consensus        39 g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~  117 (428)
                      +..+++. +.+.+++.+.....++|+++|+||++||++|+.+.|.|++++++++++   +.++.|+.|..          
T Consensus        32 ~~~~~~~~v~~l~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~---~~~~~vd~~~~----------   98 (148)
T 3p2a_A           32 GHSLFDGEVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGK---VRFVKVNTEAE----------   98 (148)
T ss_dssp             CCBTTCCCCEECCTTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC----------
T ss_pred             CCccccCCceecCHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCc---eEEEEEECcCC----------
Confidence            4555666 777777766655567899999999999999999999999999998764   88888877644          


Q ss_pred             CCCceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          118 MPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       118 ~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                                    ..+++.|++.++|++++++    +|+++.+
T Consensus        99 --------------~~l~~~~~v~~~Pt~~~~~----~G~~~~~  124 (148)
T 3p2a_A           99 --------------PALSTRFRIRSIPTIMLYR----NGKMIDM  124 (148)
T ss_dssp             --------------HHHHHHTTCCSSSEEEEEE----TTEEEEE
T ss_pred             --------------HHHHHHCCCCccCEEEEEE----CCeEEEE
Confidence                          6788999999999999995    7877643

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.37  E-value=1.5e-12  Score=105.46  Aligned_cols=71  Identities=21%  Similarity=0.403  Sum_probs=62.0

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .|++++|+||++||++|+.+.|.|.++.++++           ++.++.|+++..                       ..
T Consensus        25 ~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~-----------~v~~~~vd~~~~-----------------------~~   70 (112)
T 1syr_A           25 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-----------KMVFIKVDVDEV-----------------------SE   70 (112)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEETTTT-----------------------HH
T ss_pred             cCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC-----------CCEEEEEECCCC-----------------------HH
Confidence            57899999999999999999999999988764           478999988855                       57


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      +++.|+|.++|+++++ ++|+++.+.
T Consensus        71 ~~~~~~v~~~Pt~~~~-~~G~~~~~~   95 (112)
T 1syr_A           71 VTEKENITSMPTFKVY-KNGSSVDTL   95 (112)
T ss_dssp             HHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred             HHHHcCCCcccEEEEE-ECCcEEEEE
Confidence            8899999999998877 799988763

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.36  E-value=2.6e-12  Score=104.60  Aligned_cols=88  Identities=22%  Similarity=0.408  Sum_probs=70.9

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .|++++|+||++||++|+.+.|.|.++.++++           ++.++.|++|..                       ..
T Consensus        27 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-----------~~~~~~v~~~~~-----------------------~~   72 (118)
T 2vm1_A           27 TGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP-----------GAIFLKVDVDEL-----------------------KD   72 (118)
T ss_dssp             HTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEETTTS-----------------------HH
T ss_pred             CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC-----------CcEEEEEEcccC-----------------------HH
Confidence            47889999999999999999999999988874           478899988754                       67


Q ss_pred             HHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHh
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAK  362 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~  362 (428)
                      +++.|++.++|+++++ ++|+++.+..       |.     +   .++|.+.|+++++
T Consensus        73 ~~~~~~v~~~Pt~~~~-~~g~~~~~~~-------g~-----~---~~~l~~~l~~~~~  114 (118)
T 2vm1_A           73 VAEAYNVEAMPTFLFI-KDGEKVDSVV-------GG-----R---KDDIHTKIVALMG  114 (118)
T ss_dssp             HHHHTTCCSBSEEEEE-ETTEEEEEEE-------SC-----C---HHHHHHHHHHHHC
T ss_pred             HHHHcCCCcCcEEEEE-eCCeEEEEec-------CC-----C---HHHHHHHHHHHhc
Confidence            8999999999999988 8999887642       21     2   2566667766654

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.36  E-value=2.3e-12  Score=103.69  Aligned_cols=74  Identities=22%  Similarity=0.455  Sum_probs=63.2

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      +++++|+||++||++|+.+.|.|.++.+++...       ..++.++.|+++.+                       .++
T Consensus        21 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~-------~~~~~~~~vd~~~~-----------------------~~l   70 (111)
T 3uvt_A           21 EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPG-------LAGVKIAEVDCTAE-----------------------RNI   70 (111)
T ss_dssp             SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC--------CCEEEEEEETTTC-----------------------HHH
T ss_pred             CCcEEEEEECCCChhHHHhhHHHHHHHHHhhcc-------CCceEEEEEecccc-----------------------HhH
Confidence            789999999999999999999999998876532       24688888888755                       678


Q ss_pred             HHhcCcCccceEEEECCCCcEEecc
Q 014225          306 TKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       306 ~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      ++.|+|.++|+++++ ++|+++.+.
T Consensus        71 ~~~~~v~~~Pt~~~~-~~g~~~~~~   94 (111)
T 3uvt_A           71 CSKYSVRGYPTLLLF-RGGKKVSEH   94 (111)
T ss_dssp             HHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred             HHhcCCCcccEEEEE-eCCcEEEec
Confidence            999999999999999 889887764

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.36  E-value=5.4e-12  Score=106.49  Aligned_cols=89  Identities=24%  Similarity=0.376  Sum_probs=71.0

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      ++.++|+||++||++|+.+.|.|.++++++++          ++.++.|+++.+                       ..+
T Consensus        50 ~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~----------~v~~~~vd~~~~-----------------------~~l   96 (140)
T 1v98_A           50 APLTLVDFFAPWCGPCRLVSPILEELARDHAG----------RLKVVKVNVDEH-----------------------PGL   96 (140)
T ss_dssp             CCEEEEEEECTTCHHHHHHHHHHHHHHHHTTT----------TEEEEEEETTTC-----------------------HHH
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHHccC----------ceEEEEEECCCC-----------------------HHH
Confidence            33399999999999999999999999988864          389999998865                       578


Q ss_pred             HHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHh
Q 014225          306 TKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAK  362 (428)
Q Consensus       306 ~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~  362 (428)
                      ++.|+|.++|+++++ ++|+++.+..+       .    .+   .++|.+.|++++.
T Consensus        97 ~~~~~v~~~Pt~~~~-~~G~~~~~~~G-------~----~~---~~~l~~~i~~~l~  138 (140)
T 1v98_A           97 AARYGVRSVPTLVLF-RRGAPVATWVG-------A----SP---RRVLEERLRPYLE  138 (140)
T ss_dssp             HHHTTCCSSSEEEEE-ETTEEEEEEES-------C----CC---HHHHHHHHHHHHT
T ss_pred             HHHCCCCccCEEEEE-eCCcEEEEEeC-------C----CC---HHHHHHHHHHHHc
Confidence            999999999999999 89998876432       1    12   3556677776664

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.35  E-value=1.4e-12  Score=123.74  Aligned_cols=74  Identities=19%  Similarity=0.347  Sum_probs=65.7

Q ss_pred             cCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchh
Q 014225          224 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK  303 (428)
Q Consensus       224 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~  303 (428)
                      -+||+|+|+||++||++|+.+.|.|.++.++++++          +.++.|++|.+                       .
T Consensus        24 ~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~----------~~~~~vd~~~~-----------------------~   70 (287)
T 3qou_A           24 SMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQ----------FILAKLDCDAE-----------------------Q   70 (287)
T ss_dssp             TTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSS----------SEEEEEETTTC-----------------------H
T ss_pred             cCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCC----------eEEEEEeCccC-----------------------H
Confidence            35899999999999999999999999999998743          88999998865                       6


Q ss_pred             HHHHhcCcCccceEEEECCCCcEEeccc
Q 014225          304 ELTKYFDVQGIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       304 ~~~~~~~v~~~P~~~lid~~G~i~~~~~  331 (428)
                      .+++.|+|.++||++++ ++|+++.+..
T Consensus        71 ~~~~~~~v~~~Pt~~~~-~~G~~~~~~~   97 (287)
T 3qou_A           71 MIAAQFGLRAIPTVYLF-QNGQPVDGFQ   97 (287)
T ss_dssp             HHHHTTTCCSSSEEEEE-ETTEEEEEEE
T ss_pred             HHHHHcCCCCCCeEEEE-ECCEEEEEee
Confidence            78999999999999999 8999887643

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.35  E-value=1.2e-12  Score=109.30  Aligned_cols=81  Identities=14%  Similarity=0.306  Sum_probs=63.0

Q ss_pred             cccCCCCEEecccC-CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceec
Q 014225           46 LLNQHGTQVKVSDL-EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVP  124 (428)
Q Consensus        46 l~~~~G~~v~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~  124 (428)
                      +...+++.+..... ++++++|+||++||++|+.+.|.|.++++++++.+ ++.++.|+.+..                 
T Consensus         9 v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~-~~~~~~vd~~~~-----------------   70 (133)
T 2dj3_A            9 VKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQK-DLVIAKMDATAN-----------------   70 (133)
T ss_dssp             SEECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSS-SEEEEEECTTTS-----------------
T ss_pred             eEEEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCC-CEEEEEecCCcC-----------------
Confidence            45556665554443 48999999999999999999999999999998642 377777655433                 


Q ss_pred             cCChHHHHHHHhhcCCCCCceEEEEcC
Q 014225          125 YSDLETKKALNRKFDIEGIPCLVVLQP  151 (428)
Q Consensus       125 ~~d~~~~~~l~~~~~v~~~P~~~lid~  151 (428)
                             ..+++.|++.++|+++++++
T Consensus        71 -------~~~~~~~~v~~~Pt~~~~~~   90 (133)
T 2dj3_A           71 -------DITNDQYKVEGFPTIYFAPS   90 (133)
T ss_dssp             -------CCCCSSCCCSSSSEEEEECT
T ss_pred             -------HHHHhhcCCCcCCEEEEEeC
Confidence                   23456799999999999996

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.35  E-value=1.6e-12  Score=110.49  Aligned_cols=71  Identities=18%  Similarity=0.396  Sum_probs=61.2

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+++|+|+|||+||++|+.+.|.|.+++++++++   +.++.|++|..                        ..+++.|+
T Consensus        22 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~d~~------------------------~~~~~~~~   74 (142)
T 1qgv_A           22 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNF---AVIYLVDITEV------------------------PDFNKMYE   74 (142)
T ss_dssp             SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTC------------------------CTTTTSSC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---eEEEEEccccC------------------------HHHHHHcC
Confidence            4799999999999999999999999999999664   88988887754                        34677899


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++|++++++    +|+++..
T Consensus        75 i~~~Pt~~~~~----~G~~v~~   92 (142)
T 1qgv_A           75 LYDPCTVMFFF----RNKHIMI   92 (142)
T ss_dssp             SCSSCEEEEEE----TTEEEEE
T ss_pred             CCCCCEEEEEE----CCcEEEE
Confidence            99999999996    7877754

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.34  E-value=1.6e-12  Score=106.56  Aligned_cols=72  Identities=31%  Similarity=0.555  Sum_probs=63.3

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+||++||++|+.+.|.|.++.++++.          ++.++.|+++.+                       ..
T Consensus        29 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~----------~~~~~~v~~~~~-----------------------~~   75 (121)
T 2i1u_A           29 SNKPVLVDFWATWCGPCKMVAPVLEEIATERAT----------DLTVAKLDVDTN-----------------------PE   75 (121)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT----------TCEEEEEETTTC-----------------------HH
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC----------CeEEEEEECCCC-----------------------HH
Confidence            478999999999999999999999999988764          488999998865                       57


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      +++.|+|.++|+++++ ++|+++.+.
T Consensus        76 ~~~~~~i~~~Pt~~~~-~~g~~~~~~  100 (121)
T 2i1u_A           76 TARNFQVVSIPTLILF-KDGQPVKRI  100 (121)
T ss_dssp             HHHHTTCCSSSEEEEE-ETTEEEEEE
T ss_pred             HHHhcCCCcCCEEEEE-ECCEEEEEe
Confidence            8999999999999988 699988764

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.34  E-value=2.8e-12  Score=109.80  Aligned_cols=70  Identities=23%  Similarity=0.328  Sum_probs=60.2

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      ++|+|+|+|||+||++|+.+.|.|.++++++++.   +.++.|++|..                        ..+++.|+
T Consensus        22 ~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~---~~~~~vd~d~~------------------------~~l~~~~~   74 (149)
T 3gix_A           22 AEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKM---AAIYLVDVDQT------------------------AVYTQYFD   74 (149)
T ss_dssp             CSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTT---EEEEEEETTTC------------------------CHHHHHTT
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCc---eEEEEEECCcC------------------------HHHHHHcC
Confidence            5799999999999999999999999999998764   88888877644                        56888999


Q ss_pred             CCCCceEEEEcCCCCCCCccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATL  160 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~  160 (428)
                      +.++|+++++.    +|+++.
T Consensus        75 v~~~Pt~~~~~----~G~~v~   91 (149)
T 3gix_A           75 ISYIPSTVFFF----NGQHMK   91 (149)
T ss_dssp             CCSSSEEEEEE----TTEEEE
T ss_pred             CCccCeEEEEE----CCeEEE
Confidence            99999999554    788773

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.34  E-value=2.9e-12  Score=117.24  Aligned_cols=92  Identities=18%  Similarity=0.401  Sum_probs=74.4

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+|+++|+||++||++|+.+.|.|.+++++++++          +.++.|++|.+                       ..
T Consensus        29 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~----------v~~~~vd~d~~-----------------------~~   75 (222)
T 3dxb_A           29 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK----------LTVAKLNIDQN-----------------------PG   75 (222)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT----------CEEEEEETTTC-----------------------TT
T ss_pred             cCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCC----------cEEEEEECCCC-----------------------HH
Confidence            5799999999999999999999999999998754          88999998865                       56


Q ss_pred             HHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhcC
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNL  364 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~  364 (428)
                      +++.|+|.++||++++ ++|+++.+..+       .    .+   .++|.+.|++++...
T Consensus        76 l~~~~~v~~~Pt~~~~-~~G~~~~~~~G-------~----~~---~~~l~~~l~~~l~~~  120 (222)
T 3dxb_A           76 TAPKYGIRGIPTLLLF-KNGEVAATKVG-------A----LS---KGQLKEFLDANLAGS  120 (222)
T ss_dssp             TGGGGTCCSBSEEEEE-ETTEEEEEEES-------C----CC---HHHHHHHHHHHSCCS
T ss_pred             HHHHcCCCcCCEEEEE-ECCeEEEEecc-------c----cC---hHHHHHHHHhhcccc
Confidence            7889999999999999 68998876432       1    12   356677777776543

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.33  E-value=2.2e-12  Score=105.75  Aligned_cols=83  Identities=17%  Similarity=0.252  Sum_probs=62.4

Q ss_pred             CCCCCceeccc-ccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcC
Q 014225          212 GHPPDEKVPVS-SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTM  290 (428)
Q Consensus       212 ~~~g~~~v~l~-~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~  290 (428)
                      +.++. .+... ..++++++|+||++||++|+.+.|.|.++++++++.     ....++.++.|+++.+.          
T Consensus        11 ~l~~~-~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~-----~~~~~v~~~~vd~~~~~----------   74 (121)
T 2djj_A           11 VVVAK-NYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKS-----EFKDRVVIAKVDATAND----------   74 (121)
T ss_dssp             ECCTT-TTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTS-----SCTTSSEEEEEETTTSC----------
T ss_pred             Eeccc-CHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhc-----ccCCceEEEEEECcccc----------
Confidence            55555 55443 246799999999999999999999999999999751     00125788888877431          


Q ss_pred             CccccccCCcchhHHHHhcCcCccceEEEECCCCcE
Q 014225          291 PWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKT  326 (428)
Q Consensus       291 ~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i  326 (428)
                                    +++  +|.++||+++++++|++
T Consensus        75 --------------~~~--~v~~~Pt~~~~~~~~~~   94 (121)
T 2djj_A           75 --------------VPD--EIQGFPTIKLYPAGAKG   94 (121)
T ss_dssp             --------------CSS--CCSSSSEEEEECSSCTT
T ss_pred             --------------ccc--ccCcCCeEEEEeCcCCC
Confidence                          222  89999999999888773

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.33  E-value=1.4e-12  Score=106.54  Aligned_cols=72  Identities=17%  Similarity=0.294  Sum_probs=60.8

Q ss_pred             cCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhh
Q 014225           58 DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK  137 (428)
Q Consensus        58 ~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~  137 (428)
                      +.++|+++|+||++||++|+.+.|.|.++++++++    +.++.|++|..                        ..+++.
T Consensus        28 ~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~----v~~~~vd~d~~------------------------~~l~~~   79 (116)
T 3qfa_C           28 AAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN----VIFLEVDVDDC------------------------QDVASE   79 (116)
T ss_dssp             HHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT----SEEEEEETTTT------------------------HHHHHH
T ss_pred             hcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC----CEEEEEECCCC------------------------HHHHHH
Confidence            34689999999999999999999999999988754    77888776543                        678899


Q ss_pred             cCCCCCceEEEEcCCCCCCCcccc
Q 014225          138 FDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       138 ~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      |++.++|+++++ +   +|+++.+
T Consensus        80 ~~v~~~Pt~~~~-~---~G~~~~~   99 (116)
T 3qfa_C           80 CEVKSMPTFQFF-K---KGQKVGE   99 (116)
T ss_dssp             TTCCSSSEEEEE-S---SSSEEEE
T ss_pred             cCCccccEEEEE-e---CCeEEEE
Confidence            999999999999 4   7877654

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.33  E-value=2.6e-12  Score=105.43  Aligned_cols=69  Identities=12%  Similarity=0.053  Sum_probs=58.9

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      +++|+|+||++||++|+.+.|.|++++++|.           ++.++.|++|..                          
T Consensus        23 ~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~-----------~v~f~kvd~d~~--------------------------   65 (118)
T 3evi_A           23 DVWVIIHLYRSSIPMCLLVNQHLSLLARKFP-----------ETKFVKAIVNSC--------------------------   65 (118)
T ss_dssp             TCEEEEEEECTTSHHHHHHHHHHHHHHHHCT-----------TSEEEEEEGGGT--------------------------
T ss_pred             CCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-----------CCEEEEEEhHHh--------------------------
Confidence            4599999999999999999999999998874           468888887621                          


Q ss_pred             HHhcCcCccceEEEECCCCcEEecccc
Q 014225          306 TKYFDVQGIPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       306 ~~~~~v~~~P~~~lid~~G~i~~~~~~  332 (428)
                      +..|+|.++||++++ ++|+.+.+..+
T Consensus        66 ~~~~~v~~~PT~~~f-k~G~~v~~~~G   91 (118)
T 3evi_A           66 IQHYHDNCLPTIFVY-KNGQIEAKFIG   91 (118)
T ss_dssp             STTCCGGGCSEEEEE-ETTEEEEEEES
T ss_pred             HHHCCCCCCCEEEEE-ECCEEEEEEeC
Confidence            367999999999999 99999988543

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.33  E-value=3.1e-12  Score=103.40  Aligned_cols=71  Identities=20%  Similarity=0.307  Sum_probs=61.7

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+||++||++|+.+.|.|.++.+.+.           ++.++.|+++..                       .+
T Consensus        18 ~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-----------~v~~~~vd~~~~-----------------------~~   63 (110)
T 2l6c_A           18 GLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP-----------QVAISSVDSEAR-----------------------PE   63 (110)
T ss_dssp             TCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT-----------TSCEEEEEGGGC-----------------------HH
T ss_pred             cCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC-----------CcEEEEEcCcCC-----------------------HH
Confidence            46899999999999999999999998887653           478888888754                       67


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      +++.|++.++|+++++ ++|+++.+.
T Consensus        64 l~~~~~v~~~Pt~~~~-~~G~~v~~~   88 (110)
T 2l6c_A           64 LMKELGFERVPTLVFI-RDGKVAKVF   88 (110)
T ss_dssp             HHHHTTCCSSCEEEEE-ESSSEEEEE
T ss_pred             HHHHcCCcccCEEEEE-ECCEEEEEE
Confidence            8999999999999999 999998874

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.32  E-value=4.7e-12  Score=106.44  Aligned_cols=70  Identities=20%  Similarity=0.441  Sum_probs=61.9

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+|+++|+||++||++|+.+.|.|.+++++++++   +.++.|++|..                        ..+++.|+
T Consensus        37 ~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~------------------------~~l~~~~~   89 (136)
T 2l5l_A           37 GDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQ---IVIYKVDTEKE------------------------QELAGAFG   89 (136)
T ss_dssp             CSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC------------------------HHHHHHTT
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCC---EEEEEEeCCCC------------------------HHHHHHcC
Confidence            5789999999999999999999999999998754   88888877644                        57888999


Q ss_pred             CCCCceEEEEcCCCCCCCcc
Q 014225          140 IEGIPCLVVLQPYDDKDDAT  159 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~  159 (428)
                      +.++|+++++++   +|+++
T Consensus        90 v~~~Pt~~~~~~---~G~~~  106 (136)
T 2l5l_A           90 IRSIPSILFIPM---EGKPE  106 (136)
T ss_dssp             CCSSCEEEEECS---SSCCE
T ss_pred             CCCCCEEEEECC---CCcEE
Confidence            999999999998   99875

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.32  E-value=3.2e-12  Score=107.62  Aligned_cols=85  Identities=21%  Similarity=0.366  Sum_probs=66.8

Q ss_pred             cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceecc
Q 014225           46 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPY  125 (428)
Q Consensus        46 l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~  125 (428)
                      +...+++.+......+|+++|+||++||++|+.+.|.|.++++++++.+.++.++.|+.+..                  
T Consensus        19 v~~l~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~------------------   80 (140)
T 2dj1_A           19 VWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSA------------------   80 (140)
T ss_dssp             EEECCTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTC------------------
T ss_pred             CEEcChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCccc------------------
Confidence            34445555544334689999999999999999999999999999988754567776655432                  


Q ss_pred             CChHHHHHHHhhcCCCCCceEEEEcCCCCCCCc
Q 014225          126 SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDA  158 (428)
Q Consensus       126 ~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i  158 (428)
                            ..+++.|++.++|+++++.    +|++
T Consensus        81 ------~~~~~~~~v~~~Pt~~~~~----~G~~  103 (140)
T 2dj1_A           81 ------SMLASKFDVSGYPTIKILK----KGQA  103 (140)
T ss_dssp             ------HHHHHHTTCCSSSEEEEEE----TTEE
T ss_pred             ------HHHHHHCCCCccCeEEEEE----CCcE
Confidence                  6788999999999999994    7863

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=99.32  E-value=1.8e-11  Score=120.48  Aligned_cols=163  Identities=12%  Similarity=0.097  Sum_probs=102.8

Q ss_pred             CCCEEEEEEecCCChhhhhhH------HHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHH
Q 014225           60 EGKVTALYFSANWYPPCGNFT------GVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKA  133 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~------p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~  133 (428)
                      .+++++|+|||+||++|....      |.+.++++.+++.+  +.++.|+++..                        ..
T Consensus        29 ~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~--v~~~~Vd~~~~------------------------~~   82 (367)
T 3us3_A           29 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKG--VGFGLVDSEKD------------------------AA   82 (367)
T ss_dssp             HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTT--EEEEEEETTTT------------------------HH
T ss_pred             hCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCC--ceEEEEeCccc------------------------HH
Confidence            468999999999999974432      68889999987654  77777766543                        78


Q ss_pred             HHhhcCCCCCceEEEEcCCCCCCCcccccchhhhhhcccCccccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCcccCC
Q 014225          134 LNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGH  213 (428)
Q Consensus       134 l~~~~~v~~~P~~~lid~~~~dG~i~~~~~~~~i~~~g~~~~p~t~~~~~~l~~~~~~~~~~~~~~~~~g~~~p~f~l~~  213 (428)
                      +++.|+|.++||++++.    +|+.+...+            +.+..   .+......         .++.+   .. ..
T Consensus        83 l~~~~~V~~~PTl~~f~----~G~~~~y~G------------~~~~~---~i~~~i~~---------~~~~~---v~-~i  130 (367)
T 3us3_A           83 VAKKLGLTEEDSIYVFK----EDEVIEYDG------------EFSAD---TLVEFLLD---------VLEDP---VE-LI  130 (367)
T ss_dssp             HHHHHTCCSTTEEEEEE----TTEEEECCS------------CCSHH---HHHHHHHH---------HHSCS---EE-EC
T ss_pred             HHHHcCCCcCceEEEEE----CCcEEEeCC------------CCCHH---HHHHHHHH---------hcCCC---cE-Ec
Confidence            99999999999999998    676532211            11111   12111111         11111   11 00


Q ss_pred             CCCceeccccc---CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcC
Q 014225          214 PPDEKVPVSSL---VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTM  290 (428)
Q Consensus       214 ~g~~~v~l~~~---~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~  290 (428)
                      +..  -.+..+   ..++++|.|+++||.   ...+.+.+++..+++.          +.+..++ +             
T Consensus       131 ~~~--~~~~~~~~~~~~~~vv~ff~~~~~---~~~~~f~~~A~~~~~~----------~~F~~~~-~-------------  181 (367)
T 3us3_A          131 EGE--RELQAFENIEDEIKLIGYFKNKDS---EHYKAFKEAAEEFHPY----------IPFFATF-D-------------  181 (367)
T ss_dssp             CSH--HHHHHHHHCCSSCEEEEECSCTTC---HHHHHHHHHHHHHTTT----------SCEEEEC-C-------------
T ss_pred             CCH--HHHHHHhccCCCcEEEEEECCCCc---hHHHHHHHHHHhhcCC----------cEEEEEC-C-------------
Confidence            000  011111   236788899998865   4566788888888754          4444432 2             


Q ss_pred             CccccccCCcchhHHHHhcCcCccceEEEECC
Q 014225          291 PWLALPFGDPTIKELTKYFDVQGIPCLVIIGP  322 (428)
Q Consensus       291 ~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~  322 (428)
                                  ..+++.|+++. |+++++-+
T Consensus       182 ------------~~~~~~~~v~~-p~i~lf~~  200 (367)
T 3us3_A          182 ------------SKVAKKLTLKL-NEIDFYEA  200 (367)
T ss_dssp             ------------HHHHHHHTCCT-TCEEEECT
T ss_pred             ------------HHHHHHcCCCC-CeEEEEcC
Confidence                        56788899985 99999955

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.32  E-value=2.7e-12  Score=103.97  Aligned_cols=71  Identities=24%  Similarity=0.413  Sum_probs=62.0

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      ++|+++|+||++||++|+.+.|.|.+++++++++   +.++.|++|.+                        ..+++.|+
T Consensus        16 ~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~---v~~~~vd~~~~------------------------~~l~~~~~   68 (112)
T 2voc_A           16 SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDK---LKIVKIDVDEN------------------------QETAGKYG   68 (112)
T ss_dssp             SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTT---CEEEEEETTTC------------------------CSHHHHTT
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---cEEEEEECCCC------------------------HHHHHHcC
Confidence            6899999999999999999999999999999763   88888887654                        45778899


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++|+++++ +   +|+++.+
T Consensus        69 v~~~Pt~~~~-~---~G~~~~~   86 (112)
T 2voc_A           69 VMSIPTLLVL-K---DGEVVET   86 (112)
T ss_dssp             CCSBSEEEEE-E---TTEEEEE
T ss_pred             CCcccEEEEE-e---CCEEEEE
Confidence            9999999999 6   8987644

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.31  E-value=6.3e-12  Score=104.21  Aligned_cols=82  Identities=7%  Similarity=0.115  Sum_probs=64.0

Q ss_pred             cccCCCCEEecccC-CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcC--CCcEEEEEEecCCChHHHHHHHhcCCCce
Q 014225           46 LLNQHGTQVKVSDL-EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNN--GSDFEVVFVSSDEDLNAFNNYRACMPWLA  122 (428)
Q Consensus        46 l~~~~G~~v~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~--~~~~~ii~vs~D~~~~~~~~~~~~~~~~~  122 (428)
                      +...+++++..... .+++++|+|||+||++|+.+.|.+.++++++...  ..++.++.|+.|..               
T Consensus        17 v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~---------------   81 (127)
T 3h79_A           17 VVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKY---------------   81 (127)
T ss_dssp             CEECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTC---------------
T ss_pred             eEECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEcccc---------------
Confidence            44455554443333 4799999999999999999999999999988632  23477777766543               


Q ss_pred             eccCChHHHHHHHhhcCCCCCceEEEEcC
Q 014225          123 VPYSDLETKKALNRKFDIEGIPCLVVLQP  151 (428)
Q Consensus       123 ~~~~d~~~~~~l~~~~~v~~~P~~~lid~  151 (428)
                               ..+++.|+|.++|+++++++
T Consensus        82 ---------~~l~~~~~v~~~Pt~~~~~~  101 (127)
T 3h79_A           82 ---------PDVIERMRVSGFPTMRYYTR  101 (127)
T ss_dssp             ---------HHHHHHTTCCSSSEEEEECS
T ss_pred             ---------HhHHHhcCCccCCEEEEEeC
Confidence                     67899999999999999996

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.31  E-value=3.8e-12  Score=102.70  Aligned_cols=70  Identities=17%  Similarity=0.380  Sum_probs=59.8

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      +||+++|+||++||++|+.+.|.|+++++++++    +.++.|++|..                        ..+++.|+
T Consensus        23 ~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~----~~~~~vd~~~~------------------------~~l~~~~~   74 (109)
T 3f3q_A           23 QDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ----ADFYKLDVDEL------------------------GDVAQKNE   74 (109)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTC------------------------HHHHHHTT
T ss_pred             cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCC----CEEEEEECCCC------------------------HHHHHHcC
Confidence            589999999999999999999999999999853    67777766543                        67889999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++|++++++    +|+++.+
T Consensus        75 v~~~Pt~~~~~----~G~~~~~   92 (109)
T 3f3q_A           75 VSAMPTLLLFK----NGKEVAK   92 (109)
T ss_dssp             CCSSSEEEEEE----TTEEEEE
T ss_pred             CCccCEEEEEE----CCEEEEE
Confidence            99999999997    6876644

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.31  E-value=2.1e-11  Score=120.75  Aligned_cols=73  Identities=12%  Similarity=0.269  Sum_probs=60.1

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCC---CcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHh
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNG---SDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR  136 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~---~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~  136 (428)
                      .+++++|.|||+||++|+.+.|.+.++++++++..   .++.++.|++|..                        ..+++
T Consensus        21 ~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~------------------------~~l~~   76 (382)
T 2r2j_A           21 NADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQH------------------------SDIAQ   76 (382)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTC------------------------HHHHH
T ss_pred             cCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCcc------------------------HHHHH
Confidence            47899999999999999999999999999996431   1377777765533                        68899


Q ss_pred             hcCCCCCceEEEEcCCCCCCCccc
Q 014225          137 KFDIEGIPCLVVLQPYDDKDDATL  160 (428)
Q Consensus       137 ~~~v~~~P~~~lid~~~~dG~i~~  160 (428)
                      .|+|.++|+++++.    +|+++.
T Consensus        77 ~~~v~~~Pt~~~f~----~G~~~~   96 (382)
T 2r2j_A           77 RYRISKYPTLKLFR----NGMMMK   96 (382)
T ss_dssp             HTTCCEESEEEEEE----TTEEEE
T ss_pred             hcCCCcCCEEEEEe----CCcEee
Confidence            99999999999887    687653

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.31  E-value=7.6e-13  Score=109.51  Aligned_cols=72  Identities=22%  Similarity=0.509  Sum_probs=58.9

Q ss_pred             CCcEEEEEEeccCCh--------------hHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcC
Q 014225          225 VGKTVGLYFSARWCI--------------PCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTM  290 (428)
Q Consensus       225 ~gk~vll~F~a~wC~--------------~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~  290 (428)
                      .||+++|+||++||+              +|+.+.|.+.+++++++++          +.++.|++|.+           
T Consensus        20 ~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~----------~~~~~vd~d~~-----------   78 (123)
T 1oaz_A           20 ADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGK----------LTVAKLNIDQN-----------   78 (123)
T ss_dssp             CSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-----------------CEEEEEETTSC-----------
T ss_pred             CCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCC----------eEEEEEECCCC-----------
Confidence            479999999999999              9999999999999888654          78999998865           


Q ss_pred             CccccccCCcchhHHHHhcCcCccceEEEECCCCcEEecc
Q 014225          291 PWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       291 ~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                                  .++++.|+|.++|+++++ ++|+++.+.
T Consensus        79 ------------~~l~~~~~v~~~Pt~~~~-~~G~~~~~~  105 (123)
T 1oaz_A           79 ------------PGTAPKYGIRGIPTLLLF-KNGEVAATK  105 (123)
T ss_dssp             ------------TTTGGGGTCCBSSEEEEE-ESSSEEEEE
T ss_pred             ------------HHHHHHcCCCccCEEEEE-ECCEEEEEE
Confidence                        568899999999999999 999998764

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.30  E-value=2.2e-12  Score=103.36  Aligned_cols=82  Identities=15%  Similarity=0.256  Sum_probs=65.9

Q ss_pred             CCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCCh
Q 014225           49 QHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDL  128 (428)
Q Consensus        49 ~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~  128 (428)
                      .+++.+.....++++++|+||++||++|+.+.|.+.++++++++.   +.++.|+.|..                     
T Consensus         9 l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~---------------------   64 (109)
T 3tco_A            9 LTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGK---AVFGRLNVDEN---------------------   64 (109)
T ss_dssp             CCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTTC---------------------
T ss_pred             ecHHHHHHHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCC---ceEEEEccccC---------------------
Confidence            344444333335899999999999999999999999999999764   77888776544                     


Q ss_pred             HHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          129 ETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       129 ~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                         ..+++.|++.++|+++++ +   +|+++.+
T Consensus        65 ---~~~~~~~~i~~~Pt~~~~-~---~g~~~~~   90 (109)
T 3tco_A           65 ---QKIADKYSVLNIPTTLIF-V---NGQLVDS   90 (109)
T ss_dssp             ---HHHHHHTTCCSSSEEEEE-E---TTEEEEE
T ss_pred             ---HHHHHhcCcccCCEEEEE-c---CCcEEEe
Confidence               678889999999999999 6   8977654

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.30  E-value=1.4e-11  Score=114.15  Aligned_cols=96  Identities=15%  Similarity=0.313  Sum_probs=73.9

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+|||+||++|+++.|.+.++++++++.       ..++.++.|+++.+.                     ...
T Consensus        29 ~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~-------~~~v~~~~vd~~~~~---------------------~~~   80 (244)
T 3q6o_A           29 SRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAW-------RPALYLAALDCAEET---------------------NSA   80 (244)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGG-------TTTEEEEEEETTSTT---------------------THH
T ss_pred             CCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhc-------cCcEEEEEEeCCchh---------------------hHH
Confidence            3589999999999999999999999999999863       236999999986432                     378


Q ss_pred             HHHhcCcCccceEEEECCC-----CcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhcC
Q 014225          305 LTKYFDVQGIPCLVIIGPE-----GKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNL  364 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~-----G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~  364 (428)
                      +++.|+|.++||++++++.     |..+...        |        ...+.|.+.|.+.+...
T Consensus        81 l~~~~~v~~~Pt~~~~~~g~~~~~g~~~~~~--------g--------~~~~~l~~~i~~~l~~~  129 (244)
T 3q6o_A           81 VCRDFNIPGFPTVRFFXAFTXNGSGAVFPVA--------G--------ADVQTLRERLIDALESH  129 (244)
T ss_dssp             HHHHTTCCSSSEEEEECTTCCSSSCEECCCT--------T--------CCHHHHHHHHHHHHHTC
T ss_pred             HHHHcCCCccCEEEEEeCCCcCCCCeeEecC--------C--------CCHHHHHHHHHHHHHhc
Confidence            9999999999999999763     3333211        1        12467777787777654

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.30  E-value=2.4e-12  Score=102.65  Aligned_cols=71  Identities=23%  Similarity=0.377  Sum_probs=61.3

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .||+++|+||++||++|+.+.|.+++++++++++   +.++.|++|.+                        ..+++.|+
T Consensus        16 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~---v~~~~v~~~~~------------------------~~~~~~~~   68 (105)
T 1nsw_A           16 GDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNVDEN------------------------PETTSQFG   68 (105)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTT---CEEEEEETTTC------------------------HHHHHHTT
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---cEEEEEECcCC------------------------HHHHHHcC
Confidence            5789999999999999999999999999998764   88888877654                        56888999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++|+++++ +   +|+++..
T Consensus        69 v~~~Pt~~~~-~---~G~~~~~   86 (105)
T 1nsw_A           69 IMSIPTLILF-K---GGRPVKQ   86 (105)
T ss_dssp             CCSSSEEEEE-E---TTEEEEE
T ss_pred             CccccEEEEE-e---CCeEEEE
Confidence            9999999999 6   8977643

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.30  E-value=2.9e-12  Score=107.04  Aligned_cols=69  Identities=19%  Similarity=0.372  Sum_probs=61.5

Q ss_pred             CEEEEEEecCCC--hhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           62 KVTALYFSANWY--PPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        62 k~vlv~F~a~wC--~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      ++|||+|||+||  +||+...|.|.++.++|.++   +.++-|++|..                        ..++..|+
T Consensus        34 ~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~---v~~~KVdvDe~------------------------~~la~~yg   86 (137)
T 2qsi_A           34 KIVVLFFRGDAVRFPEAADLAVVLPELINAFPGR---LVAAEVAAEAE------------------------RGLMARFG   86 (137)
T ss_dssp             SEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTT---EEEEEECGGGH------------------------HHHHHHHT
T ss_pred             CcEEEEEeCCccCCCchhhHHhHHHHHHHHccCC---cEEEEEECCCC------------------------HHHHHHcC
Confidence            499999999999  99999999999999999765   88888766543                        88999999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      |.++||++++.    ||+++.+
T Consensus        87 V~siPTlilFk----dG~~v~~  104 (137)
T 2qsi_A           87 VAVCPSLAVVQ----PERTLGV  104 (137)
T ss_dssp             CCSSSEEEEEE----CCEEEEE
T ss_pred             CccCCEEEEEE----CCEEEEE
Confidence            99999999998    8988866

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.30  E-value=3.7e-12  Score=101.50  Aligned_cols=71  Identities=21%  Similarity=0.382  Sum_probs=61.9

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      ++++++|+||++||++|+.+.|.+.+++++++++   +.++.|+.|.+                        ..+++.|+
T Consensus        18 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~------------------------~~~~~~~~   70 (106)
T 3die_A           18 ESGVQLVDFWATACGPCKMIAPVLEELAADYEGK---ADILKLDVDEN------------------------PSTAAKYE   70 (106)
T ss_dssp             CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC------------------------HHHHHHTT
T ss_pred             cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---cEEEEEECCcC------------------------HHHHHhCC
Confidence            7899999999999999999999999999999765   88888877654                        67888999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++|++++++    +|+++.+
T Consensus        71 v~~~Pt~~~~~----~G~~~~~   88 (106)
T 3die_A           71 VMSIPTLIVFK----DGQPVDK   88 (106)
T ss_dssp             CCSBSEEEEEE----TTEEEEE
T ss_pred             CcccCEEEEEe----CCeEEEE
Confidence            99999999996    7877643

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.30  E-value=3.4e-12  Score=102.06  Aligned_cols=70  Identities=11%  Similarity=0.198  Sum_probs=52.8

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      ++|+++|+|||+||++|+.+.|.+.++++++.    ++.++.|++|..                        ..+++.|+
T Consensus        17 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~----~~~~~~vd~~~~------------------------~~l~~~~~   68 (105)
T 4euy_A           17 EQQLVLLFIKTENCGVCDVMLRKVNYVLENYN----YVEKIEILLQDM------------------------QEIAGRYA   68 (105)
T ss_dssp             CSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT----TEEEEEEEECCC--------------------------------
T ss_pred             cCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC----CceEEEEECCCC------------------------HHHHHhcC
Confidence            57999999999999999999999999999883    288888877655                        56778899


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++|++++++    +|+++.+
T Consensus        69 v~~~Pt~~~~~----~G~~~~~   86 (105)
T 4euy_A           69 VFTGPTVLLFY----NGKEILR   86 (105)
T ss_dssp             -CCCCEEEEEE----TTEEEEE
T ss_pred             CCCCCEEEEEe----CCeEEEE
Confidence            99999999996    7877643

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.30  E-value=1.1e-11  Score=102.82  Aligned_cols=68  Identities=18%  Similarity=0.390  Sum_probs=59.4

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+|+++|+||++||++|+.+.|.+.++++++++.   +.++.|++|..                        ..+++.|+
T Consensus        34 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~------------------------~~l~~~~~   86 (130)
T 2dml_A           34 SDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDV---VKVGAVNADKH------------------------QSLGGQYG   86 (130)
T ss_dssp             CSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTT---SEEEEEETTTC------------------------HHHHHHHT
T ss_pred             CCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCc---eEEEEEeCCCC------------------------HHHHHHcC
Confidence            4789999999999999999999999999998764   77887776543                        67889999


Q ss_pred             CCCCceEEEEcCCCCCCC
Q 014225          140 IEGIPCLVVLQPYDDKDD  157 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~  157 (428)
                      +.++|+++++++   +|.
T Consensus        87 v~~~Pt~~~~~~---~~~  101 (130)
T 2dml_A           87 VQGFPTIKIFGA---NKN  101 (130)
T ss_dssp             CCSSSEEEEESS---CTT
T ss_pred             CCccCEEEEEeC---CCC
Confidence            999999999997   665

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.30  E-value=9.4e-13  Score=115.31  Aligned_cols=102  Identities=11%  Similarity=0.073  Sum_probs=64.9

Q ss_pred             EecccCCCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhcCCCcEEEEEEecCCChHHHHHH--HhcCCCceeccCCh
Q 014225           54 VKVSDLEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNY--RACMPWLAVPYSDL  128 (428)
Q Consensus        54 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~--~~~~~~~~~~~~d~  128 (428)
                      +.+...+||+|+|+|||+||++|+.+.+.+   .++.+.++++   +.++.|++|...+....+  ........+.....
T Consensus        40 ~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~---~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~  116 (172)
T 3f9u_A           40 MEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINND---YVLITLYVDNKTPLTEPVKIMENGTERTLRTVGD  116 (172)
T ss_dssp             HHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHH---CEEEEEETTCCCEEEEEEEEEETTEEEEEEEHHH
T ss_pred             HHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCC---EEEEEEecCcccccchhhhhhhcchhhhhhhhhh
Confidence            344456799999999999999999974333   4555555542   899999988764211100  00111111111011


Q ss_pred             HHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          129 ETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       129 ~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      .......+.|++.++|+++|||+   +|+++.+
T Consensus       117 ~~~~~~~~~~~v~~~Pt~~lid~---~G~~~~~  146 (172)
T 3f9u_A          117 KWSYLQRVKFGANAQPFYVLIDN---EGNPLNK  146 (172)
T ss_dssp             HHHHHHHHHHSCCCSSEEEEECT---TSCBSSC
T ss_pred             hhhHHHHHHcCCCCcceEEEECC---CCCEEee
Confidence            12122368999999999999999   9988865

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.30  E-value=3.7e-12  Score=97.35  Aligned_cols=64  Identities=16%  Similarity=0.335  Sum_probs=55.9

Q ss_pred             cEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHH
Q 014225          227 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT  306 (428)
Q Consensus       227 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  306 (428)
                      .++++.||++|||+|+++.|.|.++++++++          ++.++.|++|.+                       .+++
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~~~vd~~~~-----------------------~~~~   49 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPD----------AVEVEYINVMEN-----------------------PQKA   49 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCSS----------SEEEEEEESSSS-----------------------CCTT
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcCC----------ceEEEEEECCCC-----------------------HHHH
Confidence            5789999999999999999999999888753          489999998854                       4578


Q ss_pred             HhcCcCccceEEEECCCCcE
Q 014225          307 KYFDVQGIPCLVIIGPEGKT  326 (428)
Q Consensus       307 ~~~~v~~~P~~~lid~~G~i  326 (428)
                      +.|++.++|++++   +|++
T Consensus        50 ~~~~v~~~Pt~~~---~G~~   66 (85)
T 1fo5_A           50 MEYGIMAVPTIVI---NGDV   66 (85)
T ss_dssp             TSTTTCCSSEEEE---TTEE
T ss_pred             HHCCCcccCEEEE---CCEE
Confidence            8899999999988   8887

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=3e-12  Score=107.70  Aligned_cols=77  Identities=19%  Similarity=0.334  Sum_probs=64.5

Q ss_pred             ccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcch
Q 014225          223 SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI  302 (428)
Q Consensus       223 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~  302 (428)
                      .-++++++|+||++||++|+.+.|.|.++++++++.         ++.++.|+++..                       
T Consensus        23 ~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~---------~v~~~~vd~~~~-----------------------   70 (137)
T 2dj0_A           23 RDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCT---------GLNFGKVDVGRY-----------------------   70 (137)
T ss_dssp             HSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSS---------SCEEEECCTTTC-----------------------
T ss_pred             cCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---------CeEEEEEeCccC-----------------------
Confidence            345679999999999999999999999999998643         578888877754                       


Q ss_pred             hHHHHhcCcC------ccceEEEECCCCcEEecccc
Q 014225          303 KELTKYFDVQ------GIPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       303 ~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~  332 (428)
                      .++++.|+|.      ++||++++ ++|+++.+..+
T Consensus        71 ~~~~~~~~v~~~~~~~~~Pt~~~~-~~G~~~~~~~G  105 (137)
T 2dj0_A           71 TDVSTRYKVSTSPLTKQLPTLILF-QGGKEAMRRPQ  105 (137)
T ss_dssp             HHHHHHTTCCCCSSSSCSSEEEEE-SSSSEEEEESC
T ss_pred             HHHHHHccCcccCCcCCCCEEEEE-ECCEEEEEecC
Confidence            5688889998      99999999 89998876443

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=99.29  E-value=1.3e-11  Score=107.93  Aligned_cols=88  Identities=15%  Similarity=0.149  Sum_probs=61.4

Q ss_pred             eecccccCCcEEEEEEeccCChhHHhhhHH-H--HHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccc
Q 014225          218 KVPVSSLVGKTVGLYFSARWCIPCEKFMPK-L--LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLA  294 (428)
Q Consensus       218 ~v~l~~~~gk~vll~F~a~wC~~C~~~~~~-l--~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~  294 (428)
                      .+......||+|+|+|||+||++|+.+.+. +  .++.+.+.+.          +.++.|..|...+-...|.       
T Consensus        31 a~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~----------fv~ikVD~de~~~l~~~y~-------   93 (173)
T 3ira_A           31 AFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEA----------FVSIKVDREERPDIDNIYM-------   93 (173)
T ss_dssp             HHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHH----------CEEEEEETTTCHHHHHHHH-------
T ss_pred             HHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhc----------CceeeeCCcccCcHHHHHH-------
Confidence            344444568999999999999999999883 2  4566666554          6677777765433222221       


Q ss_pred             cccCCcchhHHHHhcCcCccceEEEECCCCcEEecc
Q 014225          295 LPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       295 ~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                              ..+...+|+.++|++++++++|+++...
T Consensus        94 --------~~~q~~~gv~g~Pt~v~l~~dG~~v~~~  121 (173)
T 3ira_A           94 --------TVCQIILGRGGWPLNIIMTPGKKPFFAG  121 (173)
T ss_dssp             --------HHHHHHHSCCCSSEEEEECTTSCEEEEE
T ss_pred             --------HHHHHHcCCCCCcceeeECCCCCceeee
Confidence                    1122235999999999999999999863

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.28  E-value=5.5e-12  Score=101.89  Aligned_cols=72  Identities=22%  Similarity=0.550  Sum_probs=59.2

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      +||+++|+||++||++|+.+.|.+.+++++++..+  +.++.|++|..                        ..+++.|+
T Consensus        20 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~--~~~~~vd~~~~------------------------~~~~~~~~   73 (112)
T 3d6i_A           20 GDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSN--VSFLSIDADEN------------------------SEISELFE   73 (112)
T ss_dssp             TTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTT--SEEEEEETTTC------------------------HHHHHHTT
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCC--EEEEEEecccC------------------------HHHHHHcC
Confidence            47999999999999999999999999999975544  88888877653                        57888999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++|+++++.    +|+++.+
T Consensus        74 v~~~Pt~~~~~----~G~~~~~   91 (112)
T 3d6i_A           74 ISAVPYFIIIH----KGTILKE   91 (112)
T ss_dssp             CCSSSEEEEEE----TTEEEEE
T ss_pred             CCcccEEEEEE----CCEEEEE
Confidence            99999999884    8977653

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=99.28  E-value=5.3e-13  Score=116.27  Aligned_cols=86  Identities=14%  Similarity=0.231  Sum_probs=64.5

Q ss_pred             cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceecc
Q 014225           46 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPY  125 (428)
Q Consensus        46 l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~  125 (428)
                      ..+.+ +.+.....+||+|+|+|||+||++|+.+.|.|.++.+.++..   +.++.|++|.+.+                
T Consensus        32 w~~~~-~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~---~~~~~v~~d~~~~----------------   91 (164)
T 1sen_A           32 WRTLE-DGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELS---HNFVMVNLEDEEE----------------   91 (164)
T ss_dssp             BCCHH-HHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHH---TTSEEEEEEGGGS----------------
T ss_pred             ccCHH-HHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcC---CeEEEEEecCCch----------------
Confidence            43444 456666678999999999999999999999999987766543   5577777765432                


Q ss_pred             CChHHHHHHHhhcCC--CCCceEEEEcCCCCCCCcccc
Q 014225          126 SDLETKKALNRKFDI--EGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       126 ~d~~~~~~l~~~~~v--~~~P~~~lid~~~~dG~i~~~  161 (428)
                             .+...|++  .++|+++++|+   +|+++.+
T Consensus        92 -------~~~~~~~~~~~~~Pt~~~~d~---~G~~~~~  119 (164)
T 1sen_A           92 -------PKDEDFSPDGGYIPRILFLDP---SGKVHPE  119 (164)
T ss_dssp             -------CSCGGGCTTCSCSSEEEEECT---TSCBCTT
T ss_pred             -------HHHHHhcccCCcCCeEEEECC---CCCEEEE
Confidence                   13345666  66999999999   9988765

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.28  E-value=1.3e-11  Score=100.85  Aligned_cols=77  Identities=16%  Similarity=0.377  Sum_probs=60.6

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .|++++|+||++|||+|+.+.|.|.+++++++            ..++.++++...+                 .+....
T Consensus        28 ~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~------------~~v~~~~~~~~~~-----------------~~~~~~   78 (118)
T 1zma_A           28 KKETATFFIGRKTCPYCRKFAGTLSGVVAETK------------AHIYFINSEEPSQ-----------------LNDLQA   78 (118)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHC------------CCCEEEETTCGGG-----------------HHHHHH
T ss_pred             CCCeEEEEEECCCCccHHHHHHHHHHHHHhcC------------CeEEEEECCCcCc-----------------HHHHHH
Confidence            46889999999999999999999999988764            3467777764321                 011357


Q ss_pred             HHHhcCcCccceEEEECCCCcEEeccc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~~  331 (428)
                      +++.|+|.++||++++ ++|+++.+..
T Consensus        79 ~~~~~~i~~~Pt~~~~-~~G~~~~~~~  104 (118)
T 1zma_A           79 FRSRYGIPTVPGFVHI-TDGQINVRCD  104 (118)
T ss_dssp             HHHHHTCCSSCEEEEE-ETTEEEEECC
T ss_pred             HHHHcCCCCCCeEEEE-ECCEEEEEec
Confidence            8899999999999999 6898887643

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=6.8e-12  Score=103.74  Aligned_cols=66  Identities=20%  Similarity=0.281  Sum_probs=57.4

Q ss_pred             EEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCC
Q 014225           63 VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEG  142 (428)
Q Consensus        63 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~  142 (428)
                      .++|+||++||++|+.+.|.|.++++++++.+  +.++.|++|..                        ..+++.|++.+
T Consensus        24 ~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~--v~~~~vd~~~~------------------------~~~~~~~~v~~   77 (126)
T 1x5e_A           24 DWMIEFYAPWCPACQNLQPEWESFAEWGEDLE--VNIAKVDVTEQ------------------------PGLSGRFIINA   77 (126)
T ss_dssp             EEEEEEECSSCHHHHHHHHHHHHHHHHHGGGT--CEEEEEETTTC------------------------HHHHHHTTCCS
T ss_pred             CEEEEEECCCCHHHHHHhHHHHHHHHHhccCC--eEEEEEECcCC------------------------HHHHHHcCCcc
Confidence            49999999999999999999999999998644  88888876644                        56888999999


Q ss_pred             CceEEEEcCCCCCCCc
Q 014225          143 IPCLVVLQPYDDKDDA  158 (428)
Q Consensus       143 ~P~~~lid~~~~dG~i  158 (428)
                      +|+++++ +   +|++
T Consensus        78 ~Pt~~~~-~---~G~~   89 (126)
T 1x5e_A           78 LPTIYHC-K---DGEF   89 (126)
T ss_dssp             SSEEEEE-E---TTEE
T ss_pred             cCEEEEE-e---CCeE
Confidence            9999999 5   8875

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.28  E-value=3.9e-12  Score=97.26  Aligned_cols=63  Identities=14%  Similarity=0.224  Sum_probs=54.8

Q ss_pred             EEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHH
Q 014225          228 TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTK  307 (428)
Q Consensus       228 ~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  307 (428)
                      ++++.||++||++|+.+.|.|.++.+++++          ++.++.|++|.+                       .++++
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~~~vd~~~~-----------------------~~~~~   49 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGD----------KIDVEKIDIMVD-----------------------REKAI   49 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHCS----------SCCEEEECTTTC-----------------------GGGGG
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhcC----------CeEEEEEECCCC-----------------------HHHHH
Confidence            468999999999999999999999988864          478898888755                       56788


Q ss_pred             hcCcCccceEEEECCCCcE
Q 014225          308 YFDVQGIPCLVIIGPEGKT  326 (428)
Q Consensus       308 ~~~v~~~P~~~lid~~G~i  326 (428)
                      .|++.++|++++   +|++
T Consensus        50 ~~~v~~~Pt~~~---~G~~   65 (85)
T 1nho_A           50 EYGLMAVPAIAI---NGVV   65 (85)
T ss_dssp             GTCSSCSSEEEE---TTTE
T ss_pred             hCCceeeCEEEE---CCEE
Confidence            999999999988   8887

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.27  E-value=9e-12  Score=100.55  Aligned_cols=71  Identities=24%  Similarity=0.410  Sum_probs=60.8

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .||+++|+||++||++|+.+.|.+.+++++++++   +.++.|+.|.+                        ..+++.|+
T Consensus        22 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~------------------------~~~~~~~~   74 (112)
T 1t00_A           22 NDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDK---IEIVKLNIDEN------------------------PGTAAKYG   74 (112)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC------------------------HHHHHHTT
T ss_pred             CCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCC---eEEEEEEcCCC------------------------HHHHHhCC
Confidence            4789999999999999999999999999998654   88888877654                        57888999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++|+++++ +   +|+++.+
T Consensus        75 v~~~Pt~~~~-~---~G~~~~~   92 (112)
T 1t00_A           75 VMSIPTLNVY-Q---GGEVAKT   92 (112)
T ss_dssp             CCSSSEEEEE-E---TTEEEEE
T ss_pred             CCcccEEEEE-e---CCEEEEE
Confidence            9999998888 4   8877643

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.27  E-value=8.6e-12  Score=99.88  Aligned_cols=71  Identities=21%  Similarity=0.467  Sum_probs=61.0

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+|+++|+||++||++|+.+.|.+++++++++++   +.++.|+.|.+                        ..+++.|+
T Consensus        19 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~------------------------~~~~~~~~   71 (108)
T 2trx_A           19 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQN------------------------PGTAPKYG   71 (108)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTC------------------------TTHHHHTT
T ss_pred             cCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCC---cEEEEEECCCC------------------------HHHHHHcC
Confidence            5789999999999999999999999999998764   88888877654                        45778899


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++|+++++ +   +|+++.+
T Consensus        72 v~~~Pt~~~~-~---~G~~~~~   89 (108)
T 2trx_A           72 IRGIPTLLLF-K---NGEVAAT   89 (108)
T ss_dssp             CCSSSEEEEE-E---TTEEEEE
T ss_pred             CcccCEEEEE-e---CCEEEEE
Confidence            9999999999 5   8987643

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.27  E-value=2.6e-12  Score=106.80  Aligned_cols=81  Identities=16%  Similarity=0.368  Sum_probs=64.1

Q ss_pred             EEecccCCCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChH
Q 014225           53 QVKVSDLEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLE  129 (428)
Q Consensus        53 ~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~  129 (428)
                      .+.++..+||+++|+||++||++|+.+.|.+   ..+.+.++..   +.++.|+.|.+..                    
T Consensus        19 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~~--------------------   75 (130)
T 2kuc_A           19 ALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRH---FVNLKMDMEKGEG--------------------   75 (130)
T ss_dssp             HHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHH---SEEEEECSSSTTH--------------------
T ss_pred             HHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcC---eEEEEEecCCcch--------------------
Confidence            3455556799999999999999999999999   6666666543   6666665554222                    


Q ss_pred             HHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          130 TKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       130 ~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                        ..+++.|++.++|+++++++   +|+++.+
T Consensus        76 --~~~~~~~~v~~~Pt~~~~d~---~G~~~~~  102 (130)
T 2kuc_A           76 --VELRKKYGVHAYPTLLFINS---SGEVVYR  102 (130)
T ss_dssp             --HHHHHHTTCCSSCEEEEECT---TSCEEEE
T ss_pred             --HHHHHHcCCCCCCEEEEECC---CCcEEEE
Confidence              78899999999999999998   9988754

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=5.2e-12  Score=106.22  Aligned_cols=75  Identities=16%  Similarity=0.341  Sum_probs=61.5

Q ss_pred             ccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHh
Q 014225           57 SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR  136 (428)
Q Consensus        57 ~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~  136 (428)
                      ..-++++++|+|||+||++|+.+.|.|.++++++++.+  +.++.|++|..                        ..+++
T Consensus        22 ~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~--v~~~~vd~~~~------------------------~~~~~   75 (137)
T 2dj0_A           22 ERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTG--LNFGKVDVGRY------------------------TDVST   75 (137)
T ss_dssp             HHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSS--CEEEECCTTTC------------------------HHHHH
T ss_pred             hcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCC--eEEEEEeCccC------------------------HHHHH
Confidence            34456799999999999999999999999999997643  77777766543                        56778


Q ss_pred             hcCCC------CCceEEEEcCCCCCCCcccc
Q 014225          137 KFDIE------GIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       137 ~~~v~------~~P~~~lid~~~~dG~i~~~  161 (428)
                      .|++.      ++|+++++.    +|+++.+
T Consensus        76 ~~~v~~~~~~~~~Pt~~~~~----~G~~~~~  102 (137)
T 2dj0_A           76 RYKVSTSPLTKQLPTLILFQ----GGKEAMR  102 (137)
T ss_dssp             HTTCCCCSSSSCSSEEEEES----SSSEEEE
T ss_pred             HccCcccCCcCCCCEEEEEE----CCEEEEE
Confidence            88888      999999995    7987754

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.27  E-value=8.8e-12  Score=104.79  Aligned_cols=68  Identities=12%  Similarity=0.079  Sum_probs=57.0

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      +|++|+|+||++||++|+.+.|.|.++++++.           ++.++.|+++..                         
T Consensus        29 ~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~-----------~v~~~~vd~~~~-------------------------   72 (135)
T 2dbc_A           29 KDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP-----------ETKFVKAIVNSC-------------------------   72 (135)
T ss_dssp             SSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS-----------SEEEEEECCSSS-------------------------
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHHHHCC-----------CcEEEEEEhhcC-------------------------
Confidence            36899999999999999999999999988763           477888877643                         


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                       .+.|+|.++||++++ ++|+++.+.
T Consensus        73 -~~~~~i~~~Pt~~~~-~~G~~v~~~   96 (135)
T 2dbc_A           73 -IEHYHDNCLPTIFVY-KNGQIEGKF   96 (135)
T ss_dssp             -CSSCCSSCCSEEEEE-SSSSCSEEE
T ss_pred             -cccCCCCCCCEEEEE-ECCEEEEEE
Confidence             157999999999999 599887764

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.27  E-value=8.6e-12  Score=100.65  Aligned_cols=72  Identities=14%  Similarity=0.257  Sum_probs=58.8

Q ss_pred             CCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhc
Q 014225           59 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF  138 (428)
Q Consensus        59 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~  138 (428)
                      .+||+++|+||++||++|+.+.|.|.++++++++    +.++.|+.|..                     .  ..+++.|
T Consensus        22 ~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~----v~~~~vd~~~~---------------------~--~~~~~~~   74 (111)
T 2pu9_C           22 AGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLD----VIFLKLDCNQE---------------------N--KTLAKEL   74 (111)
T ss_dssp             CTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEECSST---------------------T--HHHHHHH
T ss_pred             cCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCC----eEEEEEecCcc---------------------h--HHHHHHc
Confidence            4689999999999999999999999999999853    77887776521                     1  6788999


Q ss_pred             CCCCCceEEEEcCCCCCCCcccc
Q 014225          139 DIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       139 ~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      ++.++|+++ +.+   +|+++.+
T Consensus        75 ~v~~~Pt~~-~~~---~G~~~~~   93 (111)
T 2pu9_C           75 GIRVVPTFK-ILK---ENSVVGE   93 (111)
T ss_dssp             CCSBSSEEE-EES---SSSEEEE
T ss_pred             CCCeeeEEE-EEe---CCcEEEE
Confidence            999999955 556   8987643

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.27  E-value=7.1e-12  Score=105.91  Aligned_cols=71  Identities=11%  Similarity=0.174  Sum_probs=61.1

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+++++|+||++||++|+.+.|.|.+++++++++   +.++.|++|..                        ..+++.|+
T Consensus        23 ~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~------------------------~~l~~~~~   75 (140)
T 3hz4_A           23 SKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSS---AVFGRINIATN------------------------PWTAEKYG   75 (140)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEETTTC------------------------HHHHHHHT
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCc---eEEEEEECCcC------------------------HhHHHHCC
Confidence            4799999999999999999999999999999874   88888876544                        67888999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++|+++++.    +|+++.+
T Consensus        76 v~~~Pt~~~~~----~G~~~~~   93 (140)
T 3hz4_A           76 VQGTPTFKFFC----HGRPVWE   93 (140)
T ss_dssp             CCEESEEEEEE----TTEEEEE
T ss_pred             CCcCCEEEEEe----CCcEEEE
Confidence            99999999884    7877643

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.26  E-value=1.2e-11  Score=102.36  Aligned_cols=71  Identities=20%  Similarity=0.390  Sum_probs=60.6

Q ss_pred             CCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhc
Q 014225           59 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF  138 (428)
Q Consensus        59 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~  138 (428)
                      .+||+++|+||++||++|+.+.|.|++++++++  +  +.++.|++|..                        ..+++.|
T Consensus        36 ~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~--~--v~~~~vd~d~~------------------------~~l~~~~   87 (124)
T 1xfl_A           36 ESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP--N--VLFLKVDTDEL------------------------KSVASDW   87 (124)
T ss_dssp             HTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS--S--EEEEEEETTTS------------------------HHHHHHT
T ss_pred             hcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--C--cEEEEEECccC------------------------HHHHHHc
Confidence            368999999999999999999999999999985  3  88888877543                        6788999


Q ss_pred             CCCCCceEEEEcCCCCCCCcccc
Q 014225          139 DIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       139 ~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      ++.++|+++++ +   +|+++.+
T Consensus        88 ~v~~~Pt~~~~-~---~G~~~~~  106 (124)
T 1xfl_A           88 AIQAMPTFMFL-K---EGKILDK  106 (124)
T ss_dssp             TCCSSSEEEEE-E---TTEEEEE
T ss_pred             CCCccCEEEEE-E---CCEEEEE
Confidence            99999998888 5   8987654

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.26  E-value=3.7e-12  Score=107.04  Aligned_cols=77  Identities=19%  Similarity=0.227  Sum_probs=60.2

Q ss_pred             EEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHH
Q 014225          228 TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTK  307 (428)
Q Consensus       228 ~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  307 (428)
                      +++|+||++||++|+.+.|.|.+++++++            +.++.|+++.....              ...+...++++
T Consensus        33 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~------------v~~~~vd~~~~~~~--------------~~~d~~~~l~~   86 (135)
T 3emx_A           33 DAILAVYSKTCPHCHRDWPQLIQASKEVD------------VPIVMFIWGSLIGE--------------RELSAARLEMN   86 (135)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHTTCC------------SCEEEEEECTTCCH--------------HHHHHHHHHHH
T ss_pred             cEEEEEECCcCHhhhHhChhHHHHHHHCC------------CEEEEEECCCchhh--------------hhhhhhHHHHH
Confidence            89999999999999999999999887653            57888888543211              00122478899


Q ss_pred             hcCcCccceEEEECCCCcEEeccc
Q 014225          308 YFDVQGIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       308 ~~~v~~~P~~~lid~~G~i~~~~~  331 (428)
                      .|+|.++||+++++ +|+++.+..
T Consensus        87 ~~~v~~~Pt~~~~~-~G~~v~~~~  109 (135)
T 3emx_A           87 KAGVEGTPTLVFYK-EGRIVDKLV  109 (135)
T ss_dssp             HHTCCSSSEEEEEE-TTEEEEEEE
T ss_pred             HcCCceeCeEEEEc-CCEEEEEEe
Confidence            99999999988885 999988743

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.26  E-value=1.3e-11  Score=98.70  Aligned_cols=71  Identities=20%  Similarity=0.403  Sum_probs=60.7

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+|+++|+||++||++|+.+.|.+++++++++++   +.++.|+.|.+                        ..+++.|+
T Consensus        18 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~------------------------~~~~~~~~   70 (107)
T 1dby_A           18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK---LKCVKLNTDES------------------------PNVASEYG   70 (107)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC------------------------HHHHHHHT
T ss_pred             CCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCc---eEEEEEECCCC------------------------HHHHHHCC
Confidence            4789999999999999999999999999998764   88888877654                        57888999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++|+++++ +   +|+++.+
T Consensus        71 v~~~Pt~~~~-~---~G~~~~~   88 (107)
T 1dby_A           71 IRSIPTIMVF-K---GGKKCET   88 (107)
T ss_dssp             CCSSCEEEEE-S---SSSEEEE
T ss_pred             CCcCCEEEEE-e---CCEEEEE
Confidence            9999998888 5   8887643

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.26  E-value=7.8e-12  Score=103.23  Aligned_cols=80  Identities=21%  Similarity=0.431  Sum_probs=62.1

Q ss_pred             cCCcEEEEEEecc-------CChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccc
Q 014225          224 LVGKTVGLYFSAR-------WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALP  296 (428)
Q Consensus       224 ~~gk~vll~F~a~-------wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~  296 (428)
                      ..|++++|+||++       ||++|+.+.|.|.++++++++          ++.++.|+++... .|.            
T Consensus        22 ~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~----------~~~~~~vd~~~~~-~~~------------   78 (123)
T 1wou_A           22 HNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE----------GCVFIYCQVGEKP-YWK------------   78 (123)
T ss_dssp             TTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT----------TEEEEEEECCCHH-HHH------------
T ss_pred             hCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCC----------CcEEEEEECCCch-hhh------------
Confidence            3589999999999       999999999999998887653          4889999886321 110            


Q ss_pred             cCCcchhHHHHhcCcCccceEEEECCCCcEEec
Q 014225          297 FGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK  329 (428)
Q Consensus       297 ~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~  329 (428)
                         |....+++.|+|.++||+++++..+++...
T Consensus        79 ---d~~~~~~~~~~i~~~Pt~~~~~~~~~~~g~  108 (123)
T 1wou_A           79 ---DPNNDFRKNLKVTAVPTLLKYGTPQKLVES  108 (123)
T ss_dssp             ---CTTCHHHHHHCCCSSSEEEETTSSCEEEGG
T ss_pred             ---chhHHHHHHCCCCeeCEEEEEcCCceEecc
Confidence               123678889999999999999775555443

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.26  E-value=1.1e-11  Score=101.63  Aligned_cols=71  Identities=15%  Similarity=0.352  Sum_probs=61.1

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .||+++|+||++||++|+.+.|.|.+++++++++   +.++.|++|.+                        ..+++.|+
T Consensus        30 ~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~---v~~~~vd~d~~------------------------~~l~~~~~   82 (119)
T 1w4v_A           30 SETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGK---VVMAKVDIDDH------------------------TDLAIEYE   82 (119)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTS---SEEEEEETTTT------------------------HHHHHHTT
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEeCCCC------------------------HHHHHHcC
Confidence            4789999999999999999999999999998653   88888877643                        57889999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++|+++++ +   +|+++..
T Consensus        83 v~~~Pt~~~~-~---~G~~~~~  100 (119)
T 1w4v_A           83 VSAVPTVLAM-K---NGDVVDK  100 (119)
T ss_dssp             CCSSSEEEEE-E---TTEEEEE
T ss_pred             CCcccEEEEE-e---CCcEEEE
Confidence            9999999999 6   8987643

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.26  E-value=7e-12  Score=113.55  Aligned_cols=89  Identities=15%  Similarity=0.246  Sum_probs=70.5

Q ss_pred             ccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCC
Q 014225           42 DRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPW  120 (428)
Q Consensus        42 ~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~  120 (428)
                      .+++ +.+.+++.+.....+|++++|+||++||++|+.+.|.+.++++++++.   +.++.|++|..             
T Consensus        94 ~~~~~v~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~---v~~~~vd~~~~-------------  157 (210)
T 3apq_A           94 DDDPEIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGL---LRIGAVNCGDD-------------  157 (210)
T ss_dssp             TTCTTSEECCHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTT---BEEEEEETTTC-------------
T ss_pred             CCCCceEEecHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCc---eEEEEEECCcc-------------
Confidence            3444 555555555444457899999999999999999999999999998654   88888876544             


Q ss_pred             ceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          121 LAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       121 ~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                                 ..+++.|++.++|+++++ +   +|+++..
T Consensus       158 -----------~~l~~~~~v~~~Pt~~~~-~---~G~~~~~  183 (210)
T 3apq_A          158 -----------RMLCRMKGVNSYPSLFIF-R---SGMAAVK  183 (210)
T ss_dssp             -----------HHHHHHTTCCSSSEEEEE-C---TTSCCEE
T ss_pred             -----------HHHHHHcCCCcCCeEEEE-E---CCCceeE
Confidence                       578889999999999999 5   8877543

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.26  E-value=2e-12  Score=105.30  Aligned_cols=72  Identities=22%  Similarity=0.462  Sum_probs=60.4

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+||++||++|+.+.|.+.+++++++..       +.++.++.|+++.+                       ..
T Consensus        23 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~-------~~~v~~~~vd~~~~-----------------------~~   72 (120)
T 1mek_A           23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAE-------GSEIRLAKVDATEE-----------------------SD   72 (120)
T ss_dssp             HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTT-------CCCCBCEEEETTTC-----------------------CS
T ss_pred             cCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhcc-------CCcEEEEEEcCCCC-----------------------HH
Confidence            5789999999999999999999999999988754       33577777777643                       46


Q ss_pred             HHHhcCcCccceEEEECCCCcEE
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTV  327 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~  327 (428)
                      +++.|+|.++|+++++ ++|+++
T Consensus        73 ~~~~~~v~~~Pt~~~~-~~g~~~   94 (120)
T 1mek_A           73 LAQQYGVRGYPTIKFF-RNGDTA   94 (120)
T ss_dssp             SHHHHTCCSSSEEEEE-ESSCSS
T ss_pred             HHHHCCCCcccEEEEE-eCCCcC
Confidence            7889999999999999 788754

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.25  E-value=7.4e-12  Score=104.20  Aligned_cols=83  Identities=17%  Similarity=0.339  Sum_probs=65.8

Q ss_pred             cCCCCEEeccc-CCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccC
Q 014225           48 NQHGTQVKVSD-LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYS  126 (428)
Q Consensus        48 ~~~G~~v~l~~-~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~  126 (428)
                      ..+++.+.... -.+|+++|+||++||++|+.+.|.+++++++++++   +.++.|++|.+                   
T Consensus        26 ~l~~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~~~~-------------------   83 (128)
T 2o8v_B           26 HLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGK---LTVAKLNIDQN-------------------   83 (128)
T ss_dssp             EECTTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTT---EEEEEEETTTC-------------------
T ss_pred             ecChhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---eEEEEEECCCC-------------------
Confidence            33444444222 25799999999999999999999999999998764   88888887654                   


Q ss_pred             ChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          127 DLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       127 d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                           ..+++.|++.++|+++++ +   +|+++..
T Consensus        84 -----~~l~~~~~v~~~Pt~~~~-~---~G~~~~~  109 (128)
T 2o8v_B           84 -----PGTAPKYGIRGIPTLLLF-K---NGEVAAT  109 (128)
T ss_dssp             -----CTTSGGGTCCSSSEEEEE-E---TTEEEEE
T ss_pred             -----HHHHHHcCCCccCEEEEE-e---CCEEEEE
Confidence                 356778999999999999 6   8987643

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.25  E-value=1.3e-11  Score=98.85  Aligned_cols=69  Identities=9%  Similarity=0.137  Sum_probs=59.1

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      ++|+++|+||++||++|+.+.|.+.+++++++    ++.++.|++|..                        ..+++.|+
T Consensus        20 ~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~----~~~~~~vd~~~~------------------------~~~~~~~~   71 (107)
T 1gh2_A           20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP----QAVFLEVDVHQC------------------------QGTAATNN   71 (107)
T ss_dssp             TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTS------------------------HHHHHHTT
T ss_pred             CCCEEEEEEECCCChhhHHHHHHHHHHHHHCC----CcEEEEEECccC------------------------HHHHHhcC
Confidence            57999999999999999999999999999983    278888877644                        56888999


Q ss_pred             CCCCceEEEEcCCCCCCCccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATL  160 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~  160 (428)
                      +.++|+++++.    +|+++.
T Consensus        72 v~~~Pt~~~~~----~G~~~~   88 (107)
T 1gh2_A           72 ISATPTFQFFR----NKVRID   88 (107)
T ss_dssp             CCSSSEEEEEE----TTEEEE
T ss_pred             CCcccEEEEEE----CCeEEE
Confidence            99999999994    787664

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.25  E-value=1.4e-11  Score=99.08  Aligned_cols=70  Identities=24%  Similarity=0.467  Sum_probs=60.8

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+++++|.||++||++|+.+.|.+.+++++++++   +.++.|++|..                        ..+++.|+
T Consensus        21 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~---v~~~~vd~~~~------------------------~~l~~~~~   73 (111)
T 3gnj_A           21 EGKACLVMFSRKNCHVCQKVTPVLEELRLNYEES---FGFYYVDVEEE------------------------KTLFQRFS   73 (111)
T ss_dssp             SCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTTC------------------------HHHHHHTT
T ss_pred             cCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCc---eEEEEEECCcC------------------------hhHHHhcC
Confidence            5789999999999999999999999999998764   88888877644                        67889999


Q ss_pred             CCCCceEEEEcCCCCCCCccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATL  160 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~  160 (428)
                      +.++|+++++.    +|+++.
T Consensus        74 v~~~Pt~~~~~----~g~~~~   90 (111)
T 3gnj_A           74 LKGVPQILYFK----DGEYKG   90 (111)
T ss_dssp             CCSSCEEEEEE----TTEEEE
T ss_pred             CCcCCEEEEEE----CCEEEE
Confidence            99999999995    787654

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=1.3e-11  Score=102.77  Aligned_cols=68  Identities=19%  Similarity=0.402  Sum_probs=57.1

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcC-CCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhc
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNN-GSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF  138 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~-~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~  138 (428)
                      .+++++|+||++||++|+.+.|.+.++++++++. ..++.++.|+.|..                        ..+++.|
T Consensus        24 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~------------------------~~l~~~~   79 (133)
T 1x5d_A           24 SEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVN------------------------QVLASRY   79 (133)
T ss_dssp             SSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTC------------------------CHHHHHH
T ss_pred             CCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCC------------------------HHHHHhC
Confidence            4789999999999999999999999999999731 01288888776543                        5788899


Q ss_pred             CCCCCceEEEEcC
Q 014225          139 DIEGIPCLVVLQP  151 (428)
Q Consensus       139 ~v~~~P~~~lid~  151 (428)
                      ++.++|+++++++
T Consensus        80 ~v~~~Pt~~~~~~   92 (133)
T 1x5d_A           80 GIRGFPTIKIFQK   92 (133)
T ss_dssp             TCCSSSEEEEEET
T ss_pred             CCCeeCeEEEEeC
Confidence            9999999999994

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.24  E-value=5.7e-12  Score=105.65  Aligned_cols=76  Identities=16%  Similarity=0.305  Sum_probs=58.2

Q ss_pred             CCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChH
Q 014225           50 HGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLE  129 (428)
Q Consensus        50 ~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~  129 (428)
                      ++-...++..+||+++|+||++||++|+.+.|.|+++++++   +  +.++.|++|..                      
T Consensus        29 ~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~---~--v~~~~vd~~~~----------------------   81 (133)
T 3cxg_A           29 GSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY---Y--VTLVDIDVDIH----------------------   81 (133)
T ss_dssp             THHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE---E--CEEEEEETTTC----------------------
T ss_pred             hHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc---C--EEEEEEeccch----------------------
Confidence            33334456667899999999999999999999998887665   2  56666655432                      


Q ss_pred             HHHHHHhhcCCCCCceEEEE-cCCCCCCC
Q 014225          130 TKKALNRKFDIEGIPCLVVL-QPYDDKDD  157 (428)
Q Consensus       130 ~~~~l~~~~~v~~~P~~~li-d~~~~dG~  157 (428)
                        ..+++.|++.++|+++++ ++   +|+
T Consensus        82 --~~l~~~~~v~~~Pt~~~~~~~---~g~  105 (133)
T 3cxg_A           82 --PKLNDQHNIKALPTFEFYFNL---NNE  105 (133)
T ss_dssp             --HHHHHHTTCCSSSEEEEEEEE---TTE
T ss_pred             --HHHHHhcCCCCCCEEEEEEec---CCC
Confidence              678899999999999999 45   564

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.24  E-value=2.1e-11  Score=97.24  Aligned_cols=71  Identities=18%  Similarity=0.368  Sum_probs=61.6

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+++++|.||++||++|+.+.|.+.+++++++++   +.++.|++|..                        ..+++.|+
T Consensus        19 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~------------------------~~~~~~~~   71 (107)
T 2i4a_A           19 ASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGK---VTVAKVNIDDN------------------------PETPNAYQ   71 (107)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTS---EEEEEEETTTC------------------------CHHHHHTT
T ss_pred             CCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCc---EEEEEEECCCC------------------------HHHHHhcC
Confidence            5789999999999999999999999999999763   88888877654                        46788899


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++|+++++ +   +|+++..
T Consensus        72 v~~~Pt~~~~-~---~G~~~~~   89 (107)
T 2i4a_A           72 VRSIPTLMLV-R---DGKVIDK   89 (107)
T ss_dssp             CCSSSEEEEE-E---TTEEEEE
T ss_pred             CCccCEEEEE-e---CCEEEEE
Confidence            9999999999 6   8987643

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.24  E-value=1.4e-11  Score=106.19  Aligned_cols=71  Identities=17%  Similarity=0.360  Sum_probs=61.7

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+++++|+||++||++|+.+.|.|++++++++++   +.++.|+.|..                        ..+++.|+
T Consensus        63 ~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~---v~~~~vd~~~~------------------------~~l~~~~~  115 (155)
T 2ppt_A           63 DDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQ---VRLAKIDTQAH------------------------PAVAGRHR  115 (155)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---CEEEEEETTTS------------------------THHHHHTT
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCC---EEEEEEeCCcc------------------------HHHHHHcC
Confidence            5789999999999999999999999999999764   88888877644                        56888999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++|+++++ +   +|+++.+
T Consensus       116 i~~~Pt~~~~-~---~G~~~~~  133 (155)
T 2ppt_A          116 IQGIPAFILF-H---KGRELAR  133 (155)
T ss_dssp             CCSSSEEEEE-E---TTEEEEE
T ss_pred             CCcCCEEEEE-e---CCeEEEE
Confidence            9999999999 4   8977643

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.23  E-value=1.9e-11  Score=98.89  Aligned_cols=71  Identities=20%  Similarity=0.421  Sum_probs=62.0

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+++++|.||++||++|+.+.|.|.+++++++++   +.++.|++|.+                        ..+++.|+
T Consensus        24 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~---v~~~~v~~~~~------------------------~~~~~~~~   76 (115)
T 1thx_A           24 AEQPVLVYFWASWCGPCQLMSPLINLAANTYSDR---LKVVKLEIDPN------------------------PTTVKKYK   76 (115)
T ss_dssp             CSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT---CEEEEEESTTC------------------------HHHHHHTT
T ss_pred             CCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCc---EEEEEEEcCCC------------------------HHHHHHcC
Confidence            5789999999999999999999999999998764   88888877654                        57888999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++|+++++ +   +|+++..
T Consensus        77 v~~~Pt~~~~-~---~G~~~~~   94 (115)
T 1thx_A           77 VEGVPALRLV-K---GEQILDS   94 (115)
T ss_dssp             CCSSSEEEEE-E---TTEEEEE
T ss_pred             CCceeEEEEE-c---CCEEEEE
Confidence            9999999999 6   8987653

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.23  E-value=1.2e-11  Score=117.42  Aligned_cols=72  Identities=15%  Similarity=0.300  Sum_probs=62.7

Q ss_pred             CCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhc
Q 014225           59 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF  138 (428)
Q Consensus        59 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~  138 (428)
                      .+||+|+|+||++||++|+.+.|.+.+++++++++   +.++.|++|..                        ..+++.|
T Consensus        24 ~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~~~~------------------------~~~~~~~   76 (287)
T 3qou_A           24 SMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQ---FILAKLDCDAE------------------------QMIAAQF   76 (287)
T ss_dssp             TTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSS---SEEEEEETTTC------------------------HHHHHTT
T ss_pred             cCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCC---eEEEEEeCccC------------------------HHHHHHc
Confidence            35899999999999999999999999999999864   88888877654                        6788999


Q ss_pred             CCCCCceEEEEcCCCCCCCcccc
Q 014225          139 DIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       139 ~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +|.++||++++.    +|+++.+
T Consensus        77 ~v~~~Pt~~~~~----~G~~~~~   95 (287)
T 3qou_A           77 GLRAIPTVYLFQ----NGQPVDG   95 (287)
T ss_dssp             TCCSSSEEEEEE----TTEEEEE
T ss_pred             CCCCCCeEEEEE----CCEEEEE
Confidence            999999999995    7977653

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.23  E-value=1.5e-11  Score=97.92  Aligned_cols=72  Identities=18%  Similarity=0.347  Sum_probs=60.5

Q ss_pred             cCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhh
Q 014225           58 DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK  137 (428)
Q Consensus        58 ~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~  137 (428)
                      +.++|+++|+||++||++|+.+.|.+.++++++++    +.++.|+.|..                        ..+++.
T Consensus        17 ~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~----~~~~~vd~~~~------------------------~~~~~~   68 (105)
T 3m9j_A           17 AAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN----VIFLEVDVDDC------------------------QDVASE   68 (105)
T ss_dssp             HTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT----SEEEEEETTTC------------------------HHHHHH
T ss_pred             hcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccC----eEEEEEEhhhh------------------------HHHHHH
Confidence            34689999999999999999999999999998854    77887766544                        678889


Q ss_pred             cCCCCCceEEEEcCCCCCCCcccc
Q 014225          138 FDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       138 ~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      |++.++|+++++.    +|+++.+
T Consensus        69 ~~v~~~Pt~~~~~----~g~~~~~   88 (105)
T 3m9j_A           69 SEVKSMPTFQFFK----KGQKVGE   88 (105)
T ss_dssp             TTCCBSSEEEEEE----TTEEEEE
T ss_pred             cCCCcCcEEEEEE----CCeEEEE
Confidence            9999999999995    7876643

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.23  E-value=2e-11  Score=100.21  Aligned_cols=68  Identities=18%  Similarity=0.231  Sum_probs=59.3

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+|+++|+||++||++|+.+.|.+.+++++++++   +.++.|++|..                        ..+++.|+
T Consensus        20 ~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~------------------------~~~~~~~~   72 (122)
T 3aps_A           20 GKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGK---VRAGKVDCQAY------------------------PQTCQKAG   72 (122)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---CEEEEEETTTC------------------------HHHHHHTT
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEeCcCC------------------------HHHHHHcC
Confidence            4789999999999999999999999999999763   88888877644                        56888999


Q ss_pred             CCCCceEEEEcCCCCCCC
Q 014225          140 IEGIPCLVVLQPYDDKDD  157 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~  157 (428)
                      +.++|+++++++   +|.
T Consensus        73 v~~~Pt~~~~~~---~~~   87 (122)
T 3aps_A           73 IKAYPSVKLYQY---ERA   87 (122)
T ss_dssp             CCSSSEEEEEEE---EGG
T ss_pred             CCccceEEEEeC---CCc
Confidence            999999999986   554

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.22  E-value=2.3e-11  Score=99.02  Aligned_cols=70  Identities=16%  Similarity=0.334  Sum_probs=59.3

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      +||+++|+||++||++|+.+.|.|+++++++++    +.++.|++|..                        ..+++.|+
T Consensus        29 ~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~----v~~~~vd~~~~------------------------~~l~~~~~   80 (114)
T 2oe3_A           29 QNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD----VRFVKCDVDES------------------------PDIAKECE   80 (114)
T ss_dssp             HCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT----SEEEEEETTTC------------------------HHHHHHTT
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC----CEEEEEECCCC------------------------HHHHHHCC
Confidence            579999999999999999999999999998754    77888776544                        57888999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++|+++++ +   +|+++.+
T Consensus        81 v~~~Pt~~~~-~---~G~~~~~   98 (114)
T 2oe3_A           81 VTAMPTFVLG-K---DGQLIGK   98 (114)
T ss_dssp             CCSBSEEEEE-E---TTEEEEE
T ss_pred             CCcccEEEEE-e---CCeEEEE
Confidence            9999998887 5   8977643

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.22  E-value=2e-11  Score=98.38  Aligned_cols=70  Identities=17%  Similarity=0.273  Sum_probs=59.8

Q ss_pred             CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225           61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI  140 (428)
Q Consensus        61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v  140 (428)
                      +|+++|+||++||++|+.+.|.|.++++++++.   +.++.|+.|..                        ..+++.|++
T Consensus        24 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~------------------------~~~~~~~~v   76 (112)
T 1ep7_A           24 HKPIVVDFTATWCGPCKMIAPLFETLSNDYAGK---VIFLKVDVDAV------------------------AAVAEAAGI   76 (112)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTTT------------------------HHHHHHHTC
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCC---eEEEEEECCch------------------------HHHHHHcCC
Confidence            789999999999999999999999999998753   88888877543                        678899999


Q ss_pred             CCCceEEEEcCCCCCCCcccc
Q 014225          141 EGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       141 ~~~P~~~lid~~~~dG~i~~~  161 (428)
                      .++|+++++ +   +|+++.+
T Consensus        77 ~~~Pt~~~~-~---~G~~~~~   93 (112)
T 1ep7_A           77 TAMPTFHVY-K---DGVKADD   93 (112)
T ss_dssp             CBSSEEEEE-E---TTEEEEE
T ss_pred             CcccEEEEE-E---CCeEEEE
Confidence            999998777 5   8977643

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.21  E-value=4.2e-11  Score=95.27  Aligned_cols=72  Identities=26%  Similarity=0.481  Sum_probs=60.8

Q ss_pred             CCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhc
Q 014225           59 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF  138 (428)
Q Consensus        59 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~  138 (428)
                      .++++++|.||++||++|+.+.|.++++++++++.   +.++.|+.|..                        ..+++.|
T Consensus        18 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~------------------------~~~~~~~   70 (106)
T 1xwb_A           18 ASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN---VVVLKVDVDEC------------------------EDIAMEY   70 (106)
T ss_dssp             HTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTC------------------------HHHHHHT
T ss_pred             cCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCC---eEEEEEeccch------------------------HHHHHHc
Confidence            46899999999999999999999999999998643   88888877643                        6788899


Q ss_pred             CCCCCceEEEEcCCCCCCCcccc
Q 014225          139 DIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       139 ~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      ++.++|+++++.    +|+++.+
T Consensus        71 ~v~~~Pt~~~~~----~G~~~~~   89 (106)
T 1xwb_A           71 NISSMPTFVFLK----NGVKVEE   89 (106)
T ss_dssp             TCCSSSEEEEEE----TTEEEEE
T ss_pred             CCCcccEEEEEc----CCcEEEE
Confidence            999999987774    7876643

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}

Probab=99.21  E-value=1.5e-11  Score=107.37  Aligned_cols=116  Identities=9%  Similarity=0.242  Sum_probs=89.1

Q ss_pred             cccccccCc-cccCCC--CEEeccc-CCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEE-EEEEecCCChHH
Q 014225           37 LLASKDRDY-LLNQHG--TQVKVSD-LEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFE-VVFVSSDEDLNA  110 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G--~~v~l~~-~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~-ii~vs~D~~~~~  110 (428)
                      .+|+.+||| |.+ +|  ++++|++ ++||.++|+|| +.|||.|..+++.+++.+++|++.|  ++ |++||.|.... 
T Consensus        15 ~vGd~aPdf~l~~-~g~~~~v~L~d~~~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~g--v~~VigIS~D~~~~-   90 (171)
T 2xhf_A           15 KVGDIIPDVLVYE-DVPSKSFPIHDVFRGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEEG--YHTIACIAVNDPFV-   90 (171)
T ss_dssp             CTTCBCCCCEEEC-SSTTCEEETHHHHTTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHTT--CCEEEEEESSCHHH-
T ss_pred             cCcCCCCCeEEec-CCCCcEEEhHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC--CCEEEEEeCCCHHH-
Confidence            479999999 874 44  8999999 49998888888 7899999999999999999999988  85 99999986543 


Q ss_pred             HHHHHhcCCC--ceeccCChHHHHHHHhhcCCC-----------CCceEEEEcCCCCCCCccccc
Q 014225          111 FNNYRACMPW--LAVPYSDLETKKALNRKFDIE-----------GIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       111 ~~~~~~~~~~--~~~~~~d~~~~~~l~~~~~v~-----------~~P~~~lid~~~~dG~i~~~~  162 (428)
                      .++|.++.+.  .....+|.+  .+++++||+.           ..-.++||+    +|+|+...
T Consensus        91 ~~~w~~~~~~~~~f~lLSD~~--~~~a~ayGv~~~~~~~g~g~~~~R~tfvId----dG~V~~~~  149 (171)
T 2xhf_A           91 MAAWGKTVDPEHKIRMLADMH--GEFTRALGTELDSSKMLGNNRSRRYAMLID----DNKIRSVS  149 (171)
T ss_dssp             HHHHHHHHCTTCCSEEEECTT--SHHHHHHTCBCCCHHHHSSCCBCCEEEEEE----TTEEEEEE
T ss_pred             HHHHHHhcCCCCCeEEEEeCC--chHHHHhCCceeccccCCCcceEEEEEEEe----CCEEEEEE
Confidence            5555554443  122233544  7899999873           235678886    89887663

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=98.85  E-value=1.1e-12  Score=109.02  Aligned_cols=81  Identities=23%  Similarity=0.442  Sum_probs=66.0

Q ss_pred             CCEEecccCCCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCC
Q 014225           51 GTQVKVSDLEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSD  127 (428)
Q Consensus        51 G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d  127 (428)
                      .+.+.+...+||+++|+||++||++|+.+.|.+   .++.+.++++   +.++.|++|.+..                  
T Consensus         9 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~~------------------   67 (130)
T 2lst_A            9 PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEAR---FVVASVSVDTPEG------------------   67 (130)
Confidence            567888888999999999999999999999999   8888877653   7777776643321                  


Q ss_pred             hHHHHHHHhhcCCCCCceEEEEcCCCCCCCc
Q 014225          128 LETKKALNRKFDIEGIPCLVVLQPYDDKDDA  158 (428)
Q Consensus       128 ~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i  158 (428)
                          ..+++.|++.++|+++++|+  .+|++
T Consensus        68 ----~~~~~~~~v~~~Pt~~~~d~--~~G~~   92 (130)
T 2lst_A           68 ----QELARRYRVPGTPTFVFLVP--KAGAW   92 (130)
Confidence                67889999999999999985  15776

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.21  E-value=2.1e-11  Score=96.86  Aligned_cols=71  Identities=18%  Similarity=0.397  Sum_probs=60.2

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+++++|.||++||++|+.+.|.+.+++++++++   +.++.|+.|..                        ..+++.|+
T Consensus        17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~------------------------~~~~~~~~   69 (105)
T 1fb6_A           17 SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK---IAVYKLNTDEA------------------------PGIATQYN   69 (105)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC------------------------HHHHHHTT
T ss_pred             CCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCc---eEEEEEcCcch------------------------HHHHHhCC
Confidence            4789999999999999999999999999998764   78888776644                        57888999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++|+++++.    +|+++..
T Consensus        70 v~~~Pt~~~~~----~g~~~~~   87 (105)
T 1fb6_A           70 IRSIPTVLFFK----NGERKES   87 (105)
T ss_dssp             CCSSSEEEEEE----TTEEEEE
T ss_pred             CCcccEEEEEe----CCeEEEE
Confidence            99999988884    7877643

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.21  E-value=1.8e-11  Score=100.20  Aligned_cols=78  Identities=18%  Similarity=0.396  Sum_probs=62.8

Q ss_pred             cccCCCCEEecc-cC--CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCce
Q 014225           46 LLNQHGTQVKVS-DL--EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLA  122 (428)
Q Consensus        46 l~~~~G~~v~l~-~~--~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~  122 (428)
                      +.+.+|....+. .+  .||+++|+||++||++|+.+.|.|.++++++  .+  +.++.|++|..               
T Consensus         5 v~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~--~~--v~~~~vd~~~~---------------   65 (118)
T 2f51_A            5 IVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN--KD--VTFIKVDVDKN---------------   65 (118)
T ss_dssp             SEEECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHC--TT--SEEEEEETTTC---------------
T ss_pred             ceEecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC--CC--eEEEEEECCCC---------------
Confidence            344555555554 22  4899999999999999999999999999998  23  88888877654               


Q ss_pred             eccCChHHHHHHHhhcCCCCCceEEEEcC
Q 014225          123 VPYSDLETKKALNRKFDIEGIPCLVVLQP  151 (428)
Q Consensus       123 ~~~~d~~~~~~l~~~~~v~~~P~~~lid~  151 (428)
                               ..+++.|++.++|++++++.
T Consensus        66 ---------~~~~~~~~i~~~Pt~~~~~~   85 (118)
T 2f51_A           66 ---------GNAADAYGVSSIPALFFVKK   85 (118)
T ss_dssp             ---------HHHHHHTTCCSSSEEEEEEE
T ss_pred             ---------HHHHHhcCCCCCCEEEEEeC
Confidence                     56888999999999999974

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.21  E-value=8.6e-12  Score=105.85  Aligned_cols=89  Identities=11%  Similarity=0.141  Sum_probs=61.0

Q ss_pred             cEEEEEEeccC--ChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEE--EEEEEcCCCHHHHHHHHhcCCccccccCCcch
Q 014225          227 KTVGLYFSARW--CIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFE--VVFVSTDRDQTSFESYFGTMPWLALPFGDPTI  302 (428)
Q Consensus       227 k~vll~F~a~w--C~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~--iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~  302 (428)
                      +.++|+||++|  |++|+.+.|.|.+++++| ++          +.  ++.|++|.+                       
T Consensus        35 ~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~~----------v~~~~~~Vd~d~~-----------------------   80 (142)
T 2es7_A           35 GDGVILLSSDPRRTPEVSDNPVMIAELLREF-PQ----------FDWQVAVADLEQS-----------------------   80 (142)
T ss_dssp             CSEEEEECCCSCC----CCHHHHHHHHHHTC-TT----------SCCEEEEECHHHH-----------------------
T ss_pred             CCEEEEEECCCCCCccHHHHHHHHHHHHHHh-cc----------cceeEEEEECCCC-----------------------
Confidence            45788899877  999999999999999988 44          66  888877633                       


Q ss_pred             hHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhcC
Q 014225          303 KELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNL  364 (428)
Q Consensus       303 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~  364 (428)
                      .++++.|+|.++||++++ ++|+++.+..|       .    .+   .++|.+.|++++...
T Consensus        81 ~~la~~~~V~~iPT~~~f-k~G~~v~~~~G-------~----~~---~~~l~~~i~~~l~~~  127 (142)
T 2es7_A           81 EAIGDRFNVRRFPATLVF-TDGKLRGALSG-------I----HP---WAELLTLMRSIVDTP  127 (142)
T ss_dssp             HHHHHTTTCCSSSEEEEE-SCC----CEES-------C----CC---HHHHHHHHHHHHC--
T ss_pred             HHHHHhcCCCcCCeEEEE-eCCEEEEEEeC-------C----CC---HHHHHHHHHHHhccc
Confidence            678999999999999999 99999877432       1    12   256677777776543

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.21  E-value=2.5e-11  Score=97.48  Aligned_cols=73  Identities=14%  Similarity=0.315  Sum_probs=60.2

Q ss_pred             CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225           61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI  140 (428)
Q Consensus        61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v  140 (428)
                      +++++|+||++||++|+.+.|.+.++++++.....++.++.|+.|..                        ..+++.|++
T Consensus        21 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~------------------------~~l~~~~~v   76 (111)
T 3uvt_A           21 EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAE------------------------RNICSKYSV   76 (111)
T ss_dssp             SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTC------------------------HHHHHHTTC
T ss_pred             CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEecccc------------------------HhHHHhcCC
Confidence            78999999999999999999999999998865533478887766544                        578899999


Q ss_pred             CCCceEEEEcCCCCCCCcccc
Q 014225          141 EGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       141 ~~~P~~~lid~~~~dG~i~~~  161 (428)
                      .++|+++++.    +|+++.+
T Consensus        77 ~~~Pt~~~~~----~g~~~~~   93 (111)
T 3uvt_A           77 RGYPTLLLFR----GGKKVSE   93 (111)
T ss_dssp             CSSSEEEEEE----TTEEEEE
T ss_pred             CcccEEEEEe----CCcEEEe
Confidence            9999999885    7866543

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.20  E-value=2.3e-11  Score=99.36  Aligned_cols=75  Identities=20%  Similarity=0.467  Sum_probs=58.6

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .|++++|+||++||++|+.+.|.|.+++++++.     .+.++++|...                  +.+....+++.|+
T Consensus        28 ~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~-----~v~~~~~~~~~------------------~~~~~~~~~~~~~   84 (118)
T 1zma_A           28 KKETATFFIGRKTCPYCRKFAGTLSGVVAETKA-----HIYFINSEEPS------------------QLNDLQAFRSRYG   84 (118)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC-----CCEEEETTCGG------------------GHHHHHHHHHHHT
T ss_pred             CCCeEEEEEECCCCccHHHHHHHHHHHHHhcCC-----eEEEEECCCcC------------------cHHHHHHHHHHcC
Confidence            478999999999999999999999999998753     35566665432                  1122267889999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++|++++++    +|+++.+
T Consensus        85 i~~~Pt~~~~~----~G~~~~~  102 (118)
T 1zma_A           85 IPTVPGFVHIT----DGQINVR  102 (118)
T ss_dssp             CCSSCEEEEEE----TTEEEEE
T ss_pred             CCCCCeEEEEE----CCEEEEE
Confidence            99999999996    7876643

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10

Probab=99.20  E-value=1.6e-11  Score=108.49  Aligned_cols=116  Identities=9%  Similarity=0.169  Sum_probs=89.0

Q ss_pred             ccccccCc-ccc--C---------CC----CEEeccc-CCCCEEEEEEe-cCCChhhh-hhHHHHHHHHHHH-hcCCCcE
Q 014225           38 LASKDRDY-LLN--Q---------HG----TQVKVSD-LEGKVTALYFS-ANWYPPCG-NFTGVLVDVYEEL-RNNGSDF   97 (428)
Q Consensus        38 ~g~~~pdf-l~~--~---------~G----~~v~l~~-~~gk~vlv~F~-a~wC~~C~-~~~p~l~~l~~~~-~~~~~~~   97 (428)
                      +|+.+||| |.+  .         +|    +++++++ ++||.++|+|| +.|||.|. .+++.+++.+++| ++.|  +
T Consensus         3 vGd~aPdf~l~~~~~~~~~~~~~~~G~~~~~~v~l~d~~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~g--~   80 (182)
T 1xiy_A            3 ENDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENN--F   80 (182)
T ss_dssp             TTCBCCCCEEEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSC--C
T ss_pred             CCCCCCCeEEEcccccccccccccCCCccceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhCC--C
Confidence            58999999 877  4         67    7999998 69998877776 89999999 9999999999999 8887  8


Q ss_pred             -EEEEEecCCChHHHHHHHhcCCCc-eeccCChHHHHHHHhhcCCC-----------CCceEEEEcCCCCCCCccccc
Q 014225           98 -EVVFVSSDEDLNAFNNYRACMPWL-AVPYSDLETKKALNRKFDIE-----------GIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus        98 -~ii~vs~D~~~~~~~~~~~~~~~~-~~~~~d~~~~~~l~~~~~v~-----------~~P~~~lid~~~~dG~i~~~~  162 (428)
                       .|++||.|... ..++|.++++.. +...+|.+  ..++++||+.           ....++||+    +|+|++..
T Consensus        81 ~~V~gvS~D~~~-~~~~~~~~~~~~~f~lLsD~~--~~~a~~yGv~~~~~~~G~g~~~~R~tfvId----dG~V~~~~  151 (182)
T 1xiy_A           81 DDIYCITNNDIY-VLKSWFKSMDIKKIKYISDGN--SSFTDSMNMLVDKSNFFMGMRPWRFVAIVE----NNILVKMF  151 (182)
T ss_dssp             SEEEEEESSCHH-HHHHHHHHTTCCSSEEEECTT--SHHHHHTTCEEECGGGTCCEEECCEEEEEE----TTEEEEEE
T ss_pred             cEEEEEeCCCHH-HHHHHHHHcCCCCceEEEeCc--hHHHHHhCCceeccccCCCCceEEEEEEEc----CCEEEEEE
Confidence             49999998653 356666665532 22234544  7899999873           246788886    89988764

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.20  E-value=1.9e-11  Score=102.80  Aligned_cols=73  Identities=18%  Similarity=0.385  Sum_probs=61.9

Q ss_pred             ccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHh
Q 014225           57 SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR  136 (428)
Q Consensus        57 ~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~  136 (428)
                      +..+||+++|+||++||++|+.+.|.|++++++++  +  +.++.|++|..                        ..+++
T Consensus        42 ~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~--~--v~~~~v~~~~~------------------------~~~~~   93 (139)
T 3d22_A           42 ASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP--S--LMFLVIDVDEL------------------------SDFSA   93 (139)
T ss_dssp             HHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT--T--SEEEEEETTTS------------------------HHHHH
T ss_pred             HhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--C--CEEEEEeCccc------------------------HHHHH
Confidence            33568999999999999999999999999999984  2  78888877643                        67889


Q ss_pred             hcCCCCCceEEEEcCCCCCCCcccc
Q 014225          137 KFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       137 ~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      .|++.++|+++++ +   +|+++.+
T Consensus        94 ~~~v~~~Pt~~~~-~---~G~~~~~  114 (139)
T 3d22_A           94 SWEIKATPTFFFL-R---DGQQVDK  114 (139)
T ss_dssp             HTTCCEESEEEEE-E---TTEEEEE
T ss_pred             HcCCCcccEEEEE-c---CCeEEEE
Confidence            9999999999988 6   8987644

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.20  E-value=1.7e-11  Score=99.96  Aligned_cols=72  Identities=19%  Similarity=0.408  Sum_probs=59.7

Q ss_pred             ccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHh
Q 014225           57 SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR  136 (428)
Q Consensus        57 ~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~  136 (428)
                      ++.+||+++|+||++||++|+.+.|.++++++++   +  +.++.|+.|..                        ..+++
T Consensus        29 ~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~---~--~~~~~vd~~~~------------------------~~~~~   79 (117)
T 2xc2_A           29 EQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY---D--AIFVKVDVDKL------------------------EETAR   79 (117)
T ss_dssp             HHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS---S--SEEEEEETTTS------------------------HHHHH
T ss_pred             HhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc---C--cEEEEEECCcc------------------------HHHHH
Confidence            3447899999999999999999999999998887   3  77888776543                        67888


Q ss_pred             hcCCCCCceEEEEcCCCCCCCcccc
Q 014225          137 KFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       137 ~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      .|++.++|+++++ +   +|+++.+
T Consensus        80 ~~~v~~~Pt~~~~-~---~G~~~~~  100 (117)
T 2xc2_A           80 KYNISAMPTFIAI-K---NGEKVGD  100 (117)
T ss_dssp             HTTCCSSSEEEEE-E---TTEEEEE
T ss_pred             HcCCCccceEEEE-e---CCcEEEE
Confidence            9999999998887 4   7877643

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.20  E-value=7e-12  Score=105.13  Aligned_cols=72  Identities=11%  Similarity=0.209  Sum_probs=60.6

Q ss_pred             CCCEEEEEEecCC--ChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhh
Q 014225           60 EGKVTALYFSANW--YPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK  137 (428)
Q Consensus        60 ~gk~vlv~F~a~w--C~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~  137 (428)
                      .+++|||+|||+|  |+||+...|.|.+++++|.++.  +.++.|++|.                        ...++..
T Consensus        33 ~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~--v~~~KVdvDe------------------------~~~lA~~   86 (140)
T 2qgv_A           33 QAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYT--WQVAIADLEQ------------------------SEAIGDR   86 (140)
T ss_dssp             TCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSC--CEEEECCHHH------------------------HHHHHHH
T ss_pred             CCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCe--EEEEEEECCC------------------------CHHHHHH
Confidence            4568999999999  9999999999999999986542  6677764442                        2899999


Q ss_pred             cCCCCCceEEEEcCCCCCCCcccc
Q 014225          138 FDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       138 ~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      |+|.++||++++.    ||+++.+
T Consensus        87 ygV~sIPTlilFk----~G~~v~~  106 (140)
T 2qgv_A           87 FGAFRFPATLVFT----GGNYRGV  106 (140)
T ss_dssp             HTCCSSSEEEEEE----TTEEEEE
T ss_pred             cCCccCCEEEEEE----CCEEEEE
Confidence            9999999999998    8988765

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.20  E-value=2.9e-11  Score=100.23  Aligned_cols=69  Identities=17%  Similarity=0.353  Sum_probs=59.3

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      ++++++|+||++||++|+.+.|.|.+++++++  +  +.++.|++|..                        ..+++.|+
T Consensus        36 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~--v~~~~vd~d~~------------------------~~l~~~~~   87 (125)
T 1r26_A           36 EDILTVAWFTAVWCGPCKTIERPMEKIAYEFP--T--VKFAKVDADNN------------------------SEIVSKCR   87 (125)
T ss_dssp             SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT--T--SEEEEEETTTC------------------------HHHHHHTT
T ss_pred             cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC--C--CEEEEEECCCC------------------------HHHHHHcC
Confidence            67999999999999999999999999999983  2  88888877644                        67888999


Q ss_pred             CCCCceEEEEcCCCCCCCccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATL  160 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~  160 (428)
                      +.++|+++++ +   +|+++.
T Consensus        88 v~~~Pt~~i~-~---~G~~~~  104 (125)
T 1r26_A           88 VLQLPTFIIA-R---SGKMLG  104 (125)
T ss_dssp             CCSSSEEEEE-E---TTEEEE
T ss_pred             CCcccEEEEE-e---CCeEEE
Confidence            9999998888 5   887764

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.20  E-value=4.5e-11  Score=95.46  Aligned_cols=70  Identities=17%  Similarity=0.408  Sum_probs=60.8

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+|+++|.||++||++|+.+.|.+.+++++++++   +.++.|+.|.+                        ..+++.|+
T Consensus        17 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~------------------------~~~~~~~~   69 (109)
T 2yzu_A           17 QHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGK---LLVAKLDVDEN------------------------PKTAMRYR   69 (109)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTT---BEEEEEETTTC------------------------HHHHHHTT
T ss_pred             CCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCc---eEEEEEECCCC------------------------HhHHHhCC
Confidence            4789999999999999999999999999998753   88888877654                        56888999


Q ss_pred             CCCCceEEEEcCCCCCCCccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATL  160 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~  160 (428)
                      +.++|+++++ +   +|+++.
T Consensus        70 v~~~Pt~~~~-~---~g~~~~   86 (109)
T 2yzu_A           70 VMSIPTVILF-K---DGQPVE   86 (109)
T ss_dssp             CCSSSEEEEE-E---TTEEEE
T ss_pred             CCcCCEEEEE-e---CCcEee
Confidence            9999999999 5   897764

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=98.83  E-value=1.6e-12  Score=103.37  Aligned_cols=72  Identities=25%  Similarity=0.520  Sum_probs=61.6

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|.||++||++|+.+.|.+.++.+++.++          +.++.|++|.+                       ..
T Consensus        18 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~-----------------------~~   64 (106)
T 2yj7_A           18 SDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGK----------VKVVKVNVDEN-----------------------PN   64 (106)
Confidence            4689999999999999999999999999888643          67777777643                       56


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      +++.|++.++|+++++ ++|+++.+.
T Consensus        65 ~~~~~~v~~~Pt~~~~-~~g~~~~~~   89 (106)
T 2yj7_A           65 TAAQYGIRSIPTLLLF-KNGQVVDRL   89 (106)
Confidence            8889999999999999 899988764

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.19  E-value=6.9e-11  Score=121.15  Aligned_cols=97  Identities=15%  Similarity=0.328  Sum_probs=76.2

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      +++++|+|||+||++|+++.|.|.++++++++.       ..++.++.|+++.+.                     ..++
T Consensus        30 ~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~-------~~~v~~~~VD~d~d~---------------------~~~l   81 (519)
T 3t58_A           30 SSAWAVEFFASWCGHAIAFAPTWKELANDVKDW-------RPALNLAVLDCAEET---------------------NSAV   81 (519)
T ss_dssp             SSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGG-------TTTEEEEEEETTSGG---------------------GHHH
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCc-------CCcEEEEEEECCccc---------------------cHHH
Confidence            589999999999999999999999999999863       236899999987432                     3789


Q ss_pred             HHhcCcCccceEEEECC---CCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhcC
Q 014225          306 TKYFDVQGIPCLVIIGP---EGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNL  364 (428)
Q Consensus       306 ~~~~~v~~~P~~~lid~---~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~  364 (428)
                      ++.|+|.++||++++++   +|+.+....       |       ....++|.+.|.+.+...
T Consensus        82 ~~~~~V~~~PTl~~f~~g~~~G~~~~~~~-------g-------~~~~~~L~~~l~~~l~~~  129 (519)
T 3t58_A           82 CREFNIAGFPTVRFFQAFTKNGSGATLPG-------A-------GANVQTLRMRLIDALESH  129 (519)
T ss_dssp             HHHTTCCSBSEEEEECTTCCSCCCEEECC-------S-------SCCHHHHHHHHHHHHTTC
T ss_pred             HHHcCCcccCEEEEEcCcccCCCceeEec-------C-------CCCHHHHHHHHHHHHhhc
Confidence            99999999999999987   665444321       1       112467778888877643

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=99.19  E-value=6.7e-12  Score=101.99  Aligned_cols=96  Identities=13%  Similarity=0.109  Sum_probs=65.4

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      +...+||+|||+||++|+.+.+.+...++.....        ..+.++.|.++.+.                     ...
T Consensus        17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~--------~~~~l~~vdv~~~~---------------------~~~   67 (116)
T 3dml_A           17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEG--------RAAPVQRLQMRDPL---------------------PPG   67 (116)
T ss_dssp             --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHH--------HHSCEEEEETTSCC---------------------CTT
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhc--------ccceEEEEECCCCC---------------------chh
Confidence            4468999999999999999987655443321110        13678888888652                     146


Q ss_pred             HHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhcC
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNL  364 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~  364 (428)
                      ++..|+|.++||+++++ +|+.+.+.       .|..    ..   +.+.+.|++++...
T Consensus        68 la~~~~V~g~PT~i~f~-~G~ev~Ri-------~G~~----~~---~~f~~~L~~~l~~~  112 (116)
T 3dml_A           68 LELARPVTFTPTFVLMA-GDVESGRL-------EGYP----GE---DFFWPMLARLIGQA  112 (116)
T ss_dssp             CBCSSCCCSSSEEEEEE-TTEEEEEE-------ECCC----CH---HHHHHHHHHHHHHH
T ss_pred             HHHHCCCCCCCEEEEEE-CCEEEeee-------cCCC----CH---HHHHHHHHHHHhhc
Confidence            77889999999999997 99999873       3322    22   45566666666543

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.19  E-value=2.1e-12  Score=107.14  Aligned_cols=91  Identities=23%  Similarity=0.405  Sum_probs=70.8

Q ss_pred             cCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchh
Q 014225          224 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK  303 (428)
Q Consensus       224 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~  303 (428)
                      ..+++++|+||++||++|+.+.|.|.++.++++           ++.++.|++|.+                       .
T Consensus        34 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-----------~v~~~~v~~~~~-----------------------~   79 (130)
T 1wmj_A           34 EAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP-----------GAVFLKVDVDEL-----------------------K   79 (130)
T ss_dssp             TTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT-----------TBCCEECCTTTS-----------------------G
T ss_pred             hcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-----------CCEEEEEeccch-----------------------H
Confidence            358899999999999999999999999988874           467888877644                       5


Q ss_pred             HHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhcC
Q 014225          304 ELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNL  364 (428)
Q Consensus       304 ~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~  364 (428)
                      .+++.|+|.++|+++++ ++|+++.+..+       .     +   .++|.+.|+++++..
T Consensus        80 ~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g-------~-----~---~~~l~~~l~~~~~~~  124 (130)
T 1wmj_A           80 EVAEKYNVEAMPTFLFI-KDGAEADKVVG-------A-----R---KDDLQNTIVKHVGAT  124 (130)
T ss_dssp             GGHHHHTCCSSCCCCBC-TTTTCCBCCCT-------T-----C---TTTHHHHHHHHTSSS
T ss_pred             HHHHHcCCCccceEEEE-eCCeEEEEEeC-------C-----C---HHHHHHHHHHHHhcc
Confidence            78899999999998887 89998776432       1     1   145667777666543

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.19  E-value=2.9e-11  Score=98.93  Aligned_cols=83  Identities=11%  Similarity=0.150  Sum_probs=62.3

Q ss_pred             cccCCCCEEeccc-CCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCC--CcEEEEEEecCCChHHHHHHHhcCCCce
Q 014225           46 LLNQHGTQVKVSD-LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNG--SDFEVVFVSSDEDLNAFNNYRACMPWLA  122 (428)
Q Consensus        46 l~~~~G~~v~l~~-~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~--~~~~ii~vs~D~~~~~~~~~~~~~~~~~  122 (428)
                      +.+.+++.+.... .++++++|+||++||++|+.+.|.|.++++++++.+  .++.++.|+.+...              
T Consensus         9 v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~--------------   74 (121)
T 2djj_A            9 VTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND--------------   74 (121)
T ss_dssp             SEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC--------------
T ss_pred             eEEecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc--------------
Confidence            4455666555442 468999999999999999999999999999998621  13777777665431              


Q ss_pred             eccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCc
Q 014225          123 VPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDA  158 (428)
Q Consensus       123 ~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i  158 (428)
                                 +++  ++.++|+++++++   +|++
T Consensus        75 -----------~~~--~v~~~Pt~~~~~~---~~~~   94 (121)
T 2djj_A           75 -----------VPD--EIQGFPTIKLYPA---GAKG   94 (121)
T ss_dssp             -----------CSS--CCSSSSEEEEECS---SCTT
T ss_pred             -----------ccc--ccCcCCeEEEEeC---cCCC
Confidence                       122  8999999999997   6663

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.19  E-value=3.7e-11  Score=98.53  Aligned_cols=70  Identities=24%  Similarity=0.494  Sum_probs=59.4

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      ++|+++|+||++||++|+.+.|.|+++++++++    +.++.|++|..                        ..+++.|+
T Consensus        33 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~----~~~~~vd~~~~------------------------~~~~~~~~   84 (122)
T 2vlu_A           33 AKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN----AVFLKVDVDEL------------------------KPIAEQFS   84 (122)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTC------------------------HHHHHHTT
T ss_pred             cCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC----cEEEEEECCCC------------------------HHHHHHcC
Confidence            589999999999999999999999999998753    77888777653                        67888999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++|+++++ +   +|+++.+
T Consensus        85 v~~~Pt~~~~-~---~G~~~~~  102 (122)
T 2vlu_A           85 VEAMPTFLFM-K---EGDVKDR  102 (122)
T ss_dssp             CCSSSEEEEE-E---TTEEEEE
T ss_pred             CCcccEEEEE-e---CCEEEEE
Confidence            9999998877 5   8977643

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.19  E-value=3.4e-11  Score=103.33  Aligned_cols=70  Identities=17%  Similarity=0.436  Sum_probs=60.1

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      ++|+++|+||++||++|+.+.|.|.+++++++    ++.++.|++|..                        ..+++.|+
T Consensus        31 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~vd~~~~------------------------~~l~~~~~   82 (153)
T 2wz9_A           31 AKSLLVVHFWAPWAPQCAQMNEVMAELAKELP----QVSFVKLEAEGV------------------------PEVSEKYE   82 (153)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTS------------------------HHHHHHTT
T ss_pred             CCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC----CeEEEEEECCCC------------------------HHHHHHcC
Confidence            48999999999999999999999999999973    278888877643                        57888999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++|++++++    +|+++.+
T Consensus        83 v~~~Pt~~~~~----~G~~~~~  100 (153)
T 2wz9_A           83 ISSVPTFLFFK----NSQKIDR  100 (153)
T ss_dssp             CCSSSEEEEEE----TTEEEEE
T ss_pred             CCCCCEEEEEE----CCEEEEE
Confidence            99999999999    6877643

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.18  E-value=4.2e-11  Score=94.94  Aligned_cols=71  Identities=20%  Similarity=0.438  Sum_probs=59.9

Q ss_pred             CCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhc
Q 014225           59 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF  138 (428)
Q Consensus        59 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~  138 (428)
                      .+||+++|.||++||++|+.+.|.+++++++++  +  +.++.|+.|..                        ..+++.|
T Consensus        17 ~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~--~--~~~~~v~~~~~------------------------~~~~~~~   68 (104)
T 2vim_A           17 NKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP--E--VEFAKVDVDQN------------------------EEAAAKY   68 (104)
T ss_dssp             TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--T--SEEEEEETTTC------------------------HHHHHHT
T ss_pred             cCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC--C--CEEEEEeccCC------------------------HHHHHHc
Confidence            468999999999999999999999999999875  3  78888877643                        5788899


Q ss_pred             CCCCCceEEEEcCCCCCCCcccc
Q 014225          139 DIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       139 ~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      ++.++|++++++    +|+++.+
T Consensus        69 ~v~~~Pt~~~~~----~g~~~~~   87 (104)
T 2vim_A           69 SVTAMPTFVFIK----DGKEVDR   87 (104)
T ss_dssp             TCCSSSEEEEEE----TTEEEEE
T ss_pred             CCccccEEEEEe----CCcEEEE
Confidence            999999988886    7877643

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.18  E-value=1.5e-10  Score=113.41  Aligned_cols=94  Identities=15%  Similarity=0.209  Sum_probs=67.6

Q ss_pred             cEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHH
Q 014225          227 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT  306 (428)
Q Consensus       227 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  306 (428)
                      ++++|.|+++||++|.++.|.|.+++++|+++          +.++.|+++...                     ...++
T Consensus       136 ~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~----------i~f~~vd~~~~~---------------------~~~~~  184 (361)
T 3uem_A          136 KTHILLFLPKSVSDYDGKLSNFKTAAESFKGK----------ILFIFIDSDHTD---------------------NQRIL  184 (361)
T ss_dssp             CEEEEEECCSSSSSHHHHHHHHHHHHGGGTTT----------CEEEEECTTSGG---------------------GHHHH
T ss_pred             CcEEEEEEeCCchhHHHHHHHHHHHHHHccCc----------eEEEEecCChHH---------------------HHHHH
Confidence            57889999999999999999999999999865          677777766321                     37789


Q ss_pred             HhcCcCc--cceEEEECCCCcE-EeccccchhhcccccCCCCChHHHHHHHHHHHHHHhcC
Q 014225          307 KYFDVQG--IPCLVIIGPEGKT-VTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNL  364 (428)
Q Consensus       307 ~~~~v~~--~P~~~lid~~G~i-~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~  364 (428)
                      +.|||.+  +|++++++.++.. .+..          ...+++   .+.|.+.++..+.+.
T Consensus       185 ~~fgi~~~~~P~~~~~~~~~~~~ky~~----------~~~~~~---~~~l~~fi~~~l~g~  232 (361)
T 3uem_A          185 EFFGLKKEECPAVRLITLEEEMTKYKP----------ESEELT---AERITEFCHRFLEGK  232 (361)
T ss_dssp             HHTTCCTTTCSEEEEEECC--CCEECC----------SSCCCC---HHHHHHHHHHHHTTC
T ss_pred             HHcCCCccCCccEEEEEcCCcccccCC----------CccccC---HHHHHHHHHHHhcCC
Confidence            9999988  9999999764432 2220          001233   356677777777643

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.18  E-value=4e-11  Score=98.70  Aligned_cols=72  Identities=17%  Similarity=0.337  Sum_probs=58.8

Q ss_pred             CCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhc
Q 014225           59 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF  138 (428)
Q Consensus        59 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~  138 (428)
                      .+||+++|+||++||++|+.+.|.++++++++++    +.++.|+.+..                     .  ..+++.|
T Consensus        35 ~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~----~~~~~vd~~~~---------------------~--~~~~~~~   87 (124)
T 1faa_A           35 AGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD----VIFLKLDCNQE---------------------N--KTLAKEL   87 (124)
T ss_dssp             TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEECSST---------------------T--HHHHHHH
T ss_pred             cCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCCC----CEEEEEecCcc---------------------h--HHHHHHc
Confidence            4689999999999999999999999999998863    77777766521                     0  6788999


Q ss_pred             CCCCCceEEEEcCCCCCCCcccc
Q 014225          139 DIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       139 ~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      ++.++|+++++ +   +|+++.+
T Consensus        88 ~v~~~Pt~~~~-~---~G~~~~~  106 (124)
T 1faa_A           88 GIRVVPTFKIL-K---ENSVVGE  106 (124)
T ss_dssp             CCSSSSEEEEE-E---TTEEEEE
T ss_pred             CCCeeeEEEEE-e---CCcEEEE
Confidence            99999996665 5   8977644

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.18  E-value=2.2e-11  Score=111.22  Aligned_cols=69  Identities=20%  Similarity=0.382  Sum_probs=56.2

Q ss_pred             cCCcEEEEEEecc-CChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcch
Q 014225          224 LVGKTVGLYFSAR-WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI  302 (428)
Q Consensus       224 ~~gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~  302 (428)
                      ..+++++++||++ ||++|+.+.|.|.++.+. .          +++.++.|+++...                     .
T Consensus        20 ~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~-~----------~~v~~~~vd~~~~~---------------------~   67 (226)
T 1a8l_A           20 MVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-T----------DKLSYEIVDFDTPE---------------------G   67 (226)
T ss_dssp             CCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-C----------TTEEEEEEETTSHH---------------------H
T ss_pred             cCCCeEEEEEecCCCCchhHHHHHHHHHHHhh-C----------CceEEEEEeCCCcc---------------------c
Confidence            4567789999999 999999999999998753 2          25889999888411                     2


Q ss_pred             hHHHHhcCcCccceEEEECCCCc
Q 014225          303 KELTKYFDVQGIPCLVIIGPEGK  325 (428)
Q Consensus       303 ~~~~~~~~v~~~P~~~lid~~G~  325 (428)
                      .++++.|+|.++||++++ ++|+
T Consensus        68 ~~~~~~~~v~~~Pt~~~~-~~g~   89 (226)
T 1a8l_A           68 KELAKRYRIDRAPATTIT-QDGK   89 (226)
T ss_dssp             HHHHHHTTCCSSSEEEEE-ETTB
T ss_pred             HHHHHHcCCCcCceEEEE-cCCc
Confidence            678999999999999999 6664

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.18  E-value=3e-11  Score=97.51  Aligned_cols=70  Identities=20%  Similarity=0.312  Sum_probs=58.9

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      ++++++|+||++||++|+.+.|.|.+++++++    ++.++.|+.|..                        ..+++.|+
T Consensus        18 ~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~------------------------~~l~~~~~   69 (110)
T 2l6c_A           18 GLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP----QVAISSVDSEAR------------------------PELMKELG   69 (110)
T ss_dssp             TCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT----TSCEEEEEGGGC------------------------HHHHHHTT
T ss_pred             cCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC----CcEEEEEcCcCC------------------------HHHHHHcC
Confidence            56899999999999999999999999988864    267777766543                        67888999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++|+++++ +   +|+++.+
T Consensus        70 v~~~Pt~~~~-~---~G~~v~~   87 (110)
T 2l6c_A           70 FERVPTLVFI-R---DGKVAKV   87 (110)
T ss_dssp             CCSSCEEEEE-E---SSSEEEE
T ss_pred             CcccCEEEEE-E---CCEEEEE
Confidence            9999999999 5   8987654

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.17  E-value=2.1e-11  Score=96.42  Aligned_cols=69  Identities=14%  Similarity=0.405  Sum_probs=59.4

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      ++++++|.||++||++|+.+.|.+.++++++++    +.++.|+.|.+                        ..+++.|+
T Consensus        15 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~----~~~~~v~~~~~------------------------~~~~~~~~   66 (104)
T 2e0q_A           15 SHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ----VGFGKLNSDEN------------------------PDIAARYG   66 (104)
T ss_dssp             HSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTC------------------------HHHHHHTT
T ss_pred             cCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC----ceEEEEECCCC------------------------HHHHHhCC
Confidence            578999999999999999999999999998754    77888777644                        57888999


Q ss_pred             CCCCceEEEEcCCCCCCCccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATL  160 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~  160 (428)
                      +.++|+++++ +   +|+++.
T Consensus        67 v~~~Pt~~~~-~---~g~~~~   83 (104)
T 2e0q_A           67 VMSLPTVIFF-K---DGEPVD   83 (104)
T ss_dssp             CCSSCEEEEE-E---TTEEEE
T ss_pred             ccccCEEEEE-E---CCeEhh
Confidence            9999999999 5   897764

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.17  E-value=6.3e-11  Score=96.81  Aligned_cols=71  Identities=23%  Similarity=0.436  Sum_probs=60.6

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+++++|.||++||++|+.+.|.+.++++++++.   +.++.|++|..                        ..+++.|+
T Consensus        29 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~------------------------~~~~~~~~   81 (121)
T 2i1u_A           29 SNKPVLVDFWATWCGPCKMVAPVLEEIATERATD---LTVAKLDVDTN------------------------PETARNFQ   81 (121)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC------------------------HHHHHHTT
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEECCCC------------------------HHHHHhcC
Confidence            4789999999999999999999999999998753   88888877644                        57888999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++|+++++.    +|+++.+
T Consensus        82 i~~~Pt~~~~~----~g~~~~~   99 (121)
T 2i1u_A           82 VVSIPTLILFK----DGQPVKR   99 (121)
T ss_dssp             CCSSSEEEEEE----TTEEEEE
T ss_pred             CCcCCEEEEEE----CCEEEEE
Confidence            99999998885    7877643

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.17  E-value=2e-11  Score=100.30  Aligned_cols=72  Identities=19%  Similarity=0.361  Sum_probs=61.6

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      ++|+++|+||++||++|+.+.|.|+++++++++.+  +.++.|++|..                        ..+++.|+
T Consensus        32 ~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~--v~~~~vd~d~~------------------------~~~~~~~~   85 (121)
T 2j23_A           32 GDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDK--VGFYKVDVDEQ------------------------SQIAQEVG   85 (121)
T ss_dssp             SSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHH--SEEEEEETTTC------------------------HHHHHHHT
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCc--EEEEEEECcCC------------------------HHHHHHcC
Confidence            57899999999999999999999999999987754  78888877653                        57888999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++|++++++    +|+++.+
T Consensus        86 v~~~Pt~~~~~----~G~~~~~  103 (121)
T 2j23_A           86 IRAMPTFVFFK----NGQKIDT  103 (121)
T ss_dssp             CCSSSEEEEEE----TTEEEEE
T ss_pred             CCcccEEEEEE----CCeEEee
Confidence            99999999885    7877644

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.16  E-value=8.3e-11  Score=99.12  Aligned_cols=84  Identities=19%  Similarity=0.391  Sum_probs=59.4

Q ss_pred             cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceecc
Q 014225           46 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPY  125 (428)
Q Consensus        46 l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~  125 (428)
                      +...+++.+.....+++.++|+||++||++|+.+.|.|.+++++++++   +.++.|++|..                  
T Consensus        35 v~~l~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~------------------   93 (140)
T 1v98_A           35 VVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGR---LKVVKVNVDEH------------------   93 (140)
T ss_dssp             --------------CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTC------------------
T ss_pred             cccCCHHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHHccCc---eEEEEEECCCC------------------
Confidence            445566555544334444999999999999999999999999998753   88888877654                  


Q ss_pred             CChHHHHHHHhhcCCCCCceEEEEcCCCCCCCccc
Q 014225          126 SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATL  160 (428)
Q Consensus       126 ~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~  160 (428)
                            ..+++.|++.++|+++++.    +|+++.
T Consensus        94 ------~~l~~~~~v~~~Pt~~~~~----~G~~~~  118 (140)
T 1v98_A           94 ------PGLAARYGVRSVPTLVLFR----RGAPVA  118 (140)
T ss_dssp             ------HHHHHHTTCCSSSEEEEEE----TTEEEE
T ss_pred             ------HHHHHHCCCCccCEEEEEe----CCcEEE
Confidence                  5788899999999999994    897764

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.16  E-value=7e-11  Score=95.48  Aligned_cols=70  Identities=17%  Similarity=0.332  Sum_probs=58.9

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      +||+++|+||++||++|+.+.|.+.+++++++  +  +.++.|++|..                        ..+++.|+
T Consensus        25 ~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~--~--v~~~~vd~~~~------------------------~~~~~~~~   76 (112)
T 1syr_A           25 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYT--K--MVFIKVDVDEV------------------------SEVTEKEN   76 (112)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT--T--SEEEEEETTTT------------------------HHHHHHTT
T ss_pred             cCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC--C--CEEEEEECCCC------------------------HHHHHHcC
Confidence            58999999999999999999999999999875  2  77888876543                        57888999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++|+++++.    +|+++.+
T Consensus        77 v~~~Pt~~~~~----~G~~~~~   94 (112)
T 1syr_A           77 ITSMPTFKVYK----NGSSVDT   94 (112)
T ss_dssp             CCSSSEEEEEE----TTEEEEE
T ss_pred             CCcccEEEEEE----CCcEEEE
Confidence            99999987775    7877543

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.16  E-value=7.4e-11  Score=94.64  Aligned_cols=74  Identities=12%  Similarity=0.150  Sum_probs=62.5

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      +++++|+|+|+|||+|+...|.++++.+.  .          ++.++.|.+|...                   +...++
T Consensus        24 ~~~vvi~khatwCgpc~~~~~~~e~~~~~--~----------~v~~~~vdVde~r-------------------~~Sn~I   72 (112)
T 3iv4_A           24 NKYVFVLKHSETCPISANAYDQFNKFLYE--R----------DMDGYYLIVQQER-------------------DLSDYI   72 (112)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHH--H----------TCCEEEEEGGGGH-------------------HHHHHH
T ss_pred             CCCEEEEEECCcCHhHHHHHHHHHHHhcc--C----------CceEEEEEeecCc-------------------hhhHHH
Confidence            68999999999999999999999998874  2          4789999988552                   112568


Q ss_pred             HHhcCcC-ccceEEEECCCCcEEeccc
Q 014225          306 TKYFDVQ-GIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       306 ~~~~~v~-~~P~~~lid~~G~i~~~~~  331 (428)
                      +..|||+ ..|+++++ ++|+++.+..
T Consensus        73 A~~~~V~h~sPq~il~-k~G~~v~~~S   98 (112)
T 3iv4_A           73 AKKTNVKHESPQAFYF-VNGEMVWNRD   98 (112)
T ss_dssp             HHHHTCCCCSSEEEEE-ETTEEEEEEE
T ss_pred             HHHhCCccCCCeEEEE-ECCEEEEEee
Confidence            9999999 59999999 9999998753

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.16  E-value=7e-11  Score=95.22  Aligned_cols=71  Identities=21%  Similarity=0.484  Sum_probs=60.5

Q ss_pred             CCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhc
Q 014225           59 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF  138 (428)
Q Consensus        59 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~  138 (428)
                      .+|++++|+||++||++|+.+.|.|++++++++  +  +.++.|+.|..                        ..+++.|
T Consensus        24 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~--v~~~~v~~~~~------------------------~~~~~~~   75 (113)
T 1ti3_A           24 GSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP--N--VTFLKVDVDEL------------------------KAVAEEW   75 (113)
T ss_dssp             TSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS--S--EEEEEEETTTC------------------------HHHHHHH
T ss_pred             hcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC--C--cEEEEEEcccc------------------------HHHHHhC
Confidence            358999999999999999999999999999875  2  88888877644                        5788899


Q ss_pred             CCCCCceEEEEcCCCCCCCcccc
Q 014225          139 DIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       139 ~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      ++.++|+++++.    +|+++.+
T Consensus        76 ~v~~~Pt~~~~~----~G~~~~~   94 (113)
T 1ti3_A           76 NVEAMPTFIFLK----DGKLVDK   94 (113)
T ss_dssp             HCSSTTEEEEEE----TTEEEEE
T ss_pred             CCCcccEEEEEe----CCEEEEE
Confidence            999999999984    7977654

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=99.15  E-value=3.4e-11  Score=111.39  Aligned_cols=72  Identities=10%  Similarity=0.125  Sum_probs=60.2

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      +|++|||.||++||++|+.+.|.|.+++++|.           ++.|+.|+++.                        ..
T Consensus       132 ~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~-----------~v~f~kVd~d~------------------------~~  176 (245)
T 1a0r_P          132 KITTIVVHIYEDGIKGCDALNSSLICLAAEYP-----------MVKFCKIKASN------------------------TG  176 (245)
T ss_dssp             TTCEEEEEEECTTSTTHHHHHHHHHHHHHHCT-----------TSEEEEEEHHH------------------------HC
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHHHHCC-----------CCEEEEEeCCc------------------------HH
Confidence            47999999999999999999999999998875           46788887652                        23


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecccc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~~~  332 (428)
                      ++..|+|.++||++++ ++|+++.+..+
T Consensus       177 l~~~~~I~~~PTll~~-~~G~~v~~~vG  203 (245)
T 1a0r_P          177 AGDRFSSDVLPTLLVY-KGGELLSNFIS  203 (245)
T ss_dssp             CTTSSCTTTCSEEEEE-ETTEEEEEETT
T ss_pred             HHHHCCCCCCCEEEEE-ECCEEEEEEeC
Confidence            5678999999999999 69999877543

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.15  E-value=7.4e-11  Score=112.76  Aligned_cols=69  Identities=28%  Similarity=0.485  Sum_probs=60.0

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+|||+||++|+.+.|.|.++++++.+.          +.++.|++|.+.                     ...
T Consensus        34 ~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~----------~~~~~v~~d~~~---------------------~~~   82 (298)
T 3ed3_A           34 TNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGV----------VQVAAVNCDLNK---------------------NKA   82 (298)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT----------SEEEEEETTSTT---------------------THH
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCC----------cEEEEEEccCcc---------------------CHH
Confidence            4689999999999999999999999999998654          789999998542                     378


Q ss_pred             HHHhcCcCccceEEEECCCCc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGK  325 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~  325 (428)
                      +++.|+|.++||+++++. |+
T Consensus        83 l~~~~~I~~~Pt~~~~~~-g~  102 (298)
T 3ed3_A           83 LCAKYDVNGFPTLMVFRP-PK  102 (298)
T ss_dssp             HHHHTTCCBSSEEEEEEC-CC
T ss_pred             HHHhCCCCccceEEEEEC-Cc
Confidence            999999999999999954 54

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.15  E-value=9.1e-12  Score=101.39  Aligned_cols=72  Identities=19%  Similarity=0.431  Sum_probs=58.7

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      ++|+++|.||++||++|+.+.|.+.++++++++.+.++.++.|+.+..                        ..+++.|+
T Consensus        23 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~------------------------~~~~~~~~   78 (120)
T 1mek_A           23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEE------------------------SDLAQQYG   78 (120)
T ss_dssp             HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTC------------------------CSSHHHHT
T ss_pred             cCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCC------------------------HHHHHHCC
Confidence            579999999999999999999999999999987654466666655432                        35677899


Q ss_pred             CCCCceEEEEcCCCCCCCcc
Q 014225          140 IEGIPCLVVLQPYDDKDDAT  159 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~  159 (428)
                      +.++|+++++.    +|+.+
T Consensus        79 v~~~Pt~~~~~----~g~~~   94 (120)
T 1mek_A           79 VRGYPTIKFFR----NGDTA   94 (120)
T ss_dssp             CCSSSEEEEEE----SSCSS
T ss_pred             CCcccEEEEEe----CCCcC
Confidence            99999999995    67654

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.15  E-value=4e-11  Score=109.59  Aligned_cols=71  Identities=21%  Similarity=0.477  Sum_probs=61.1

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      ++|+++|+||++||++|+.+.|.|.+++++++++   +.++.|++|..                        ..+++.|+
T Consensus        29 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~d~~------------------------~~l~~~~~   81 (222)
T 3dxb_A           29 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQN------------------------PGTAPKYG   81 (222)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC------------------------TTTGGGGT
T ss_pred             cCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCC---cEEEEEECCCC------------------------HHHHHHcC
Confidence            5799999999999999999999999999999865   88888877654                        45678899


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++|++++++    +|+++.+
T Consensus        82 v~~~Pt~~~~~----~G~~~~~   99 (222)
T 3dxb_A           82 IRGIPTLLLFK----NGEVAAT   99 (222)
T ss_dssp             CCSBSEEEEEE----TTEEEEE
T ss_pred             CCcCCEEEEEE----CCeEEEE
Confidence            99999999996    7877643

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.13  E-value=8.9e-11  Score=95.40  Aligned_cols=70  Identities=21%  Similarity=0.475  Sum_probs=59.4

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .||+++|+||++||++|+.+.|.|++++++++  +  +.++.|+.|..                        ..+++.|+
T Consensus        27 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~--~~~~~v~~~~~------------------------~~~~~~~~   78 (118)
T 2vm1_A           27 TGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP--G--AIFLKVDVDEL------------------------KDVAEAYN   78 (118)
T ss_dssp             HTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT--T--SEEEEEETTTS------------------------HHHHHHTT
T ss_pred             CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--C--cEEEEEEcccC------------------------HHHHHHcC
Confidence            48999999999999999999999999999986  3  77888776543                        67888999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++|+++++ +   +|+++.+
T Consensus        79 v~~~Pt~~~~-~---~g~~~~~   96 (118)
T 2vm1_A           79 VEAMPTFLFI-K---DGEKVDS   96 (118)
T ss_dssp             CCSBSEEEEE-E---TTEEEEE
T ss_pred             CCcCcEEEEE-e---CCeEEEE
Confidence            9999999888 4   8877643

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.12  E-value=4.1e-11  Score=102.60  Aligned_cols=74  Identities=11%  Similarity=0.090  Sum_probs=54.2

Q ss_pred             cCCCCEEEEEEecCCChhhhhhHHHHHHHH--HHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHH
Q 014225           58 DLEGKVTALYFSANWYPPCGNFTGVLVDVY--EELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN  135 (428)
Q Consensus        58 ~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~--~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~  135 (428)
                      ...||+|+|+|||+||++|+.+.|.+.+..  .++.+.    .++.|++|.+.                       ..+.
T Consensus        41 ~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~----~fv~V~vD~e~-----------------------~~~~   93 (151)
T 3ph9_A           41 QKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQN----KFIMLNLMHET-----------------------TDKN   93 (151)
T ss_dssp             HHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHH----TCEEEEESSCC-----------------------SCGG
T ss_pred             HHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhc----CeEEEEecCCc-----------------------hhhH
Confidence            346899999999999999999999988642  222221    25556665321                       1124


Q ss_pred             hhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          136 RKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       136 ~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      ..|++.++|+++|+++   +|+++.+
T Consensus        94 ~~~~v~~~PT~~f~~~---~G~~v~~  116 (151)
T 3ph9_A           94 LSPDGQYVPRIMFVDP---SLTVRAD  116 (151)
T ss_dssp             GCTTCCCSSEEEEECT---TSCBCTT
T ss_pred             hhcCCCCCCEEEEECC---CCCEEEE
Confidence            5688999999999999   9988865

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.11  E-value=9.6e-11  Score=107.25  Aligned_cols=68  Identities=18%  Similarity=0.294  Sum_probs=54.2

Q ss_pred             CcEEEEEE----eccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcc
Q 014225          226 GKTVGLYF----SARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT  301 (428)
Q Consensus       226 gk~vll~F----~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~  301 (428)
                      +.++++.|    |++||++|+.++|.+.++++++.+.        +.+.++.|+++.+                      
T Consensus        21 ~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~--------~~v~~~~vd~~~~----------------------   70 (229)
T 2ywm_A           21 EPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQ--------DKIKLDIYSPFTH----------------------   70 (229)
T ss_dssp             SCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCT--------TTEEEEEECTTTC----------------------
T ss_pred             CCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCC--------CceEEEEecCccc----------------------
Confidence            44555555    5899999999999999998888432        2588888887755                      


Q ss_pred             hhHHHHhcCcCccceEEEECCCCc
Q 014225          302 IKELTKYFDVQGIPCLVIIGPEGK  325 (428)
Q Consensus       302 ~~~~~~~~~v~~~P~~~lid~~G~  325 (428)
                       .++++.|+|+++||+++++ +|+
T Consensus        71 -~~l~~~~~v~~~Ptl~~~~-~~~   92 (229)
T 2ywm_A           71 -KEETEKYGVDRVPTIVIEG-DKD   92 (229)
T ss_dssp             -HHHHHHTTCCBSSEEEEES-SSC
T ss_pred             -HHHHHHcCCCcCcEEEEEC-CCc
Confidence             7899999999999999995 443

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.11  E-value=3.7e-11  Score=99.23  Aligned_cols=71  Identities=21%  Similarity=0.467  Sum_probs=55.9

Q ss_pred             CCCEEEEEEecCCCh--------------hhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceecc
Q 014225           60 EGKVTALYFSANWYP--------------PCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPY  125 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~--------------~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~  125 (428)
                      +||+++|+||++||+              +|+.+.|.+.+++++++++   +.++.|++|..                  
T Consensus        20 ~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~---~~~~~vd~d~~------------------   78 (123)
T 1oaz_A           20 ADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGK---LTVAKLNIDQN------------------   78 (123)
T ss_dssp             CSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC----------CEEEEEETTSC------------------
T ss_pred             CCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCC---eEEEEEECCCC------------------
Confidence            589999999999999              9999999999999998764   88888877654                  


Q ss_pred             CChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          126 SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       126 ~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                            ..+++.|++.++|+++++ +   +|+++.+
T Consensus        79 ------~~l~~~~~v~~~Pt~~~~-~---~G~~~~~  104 (123)
T 1oaz_A           79 ------PGTAPKYGIRGIPTLLLF-K---NGEVAAT  104 (123)
T ss_dssp             ------TTTGGGGTCCBSSEEEEE-E---SSSEEEE
T ss_pred             ------HHHHHHcCCCccCEEEEE-E---CCEEEEE
Confidence                  457788999999999999 6   8987643

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=99.11  E-value=1.4e-10  Score=101.30  Aligned_cols=86  Identities=15%  Similarity=0.123  Sum_probs=60.6

Q ss_pred             EecccCCCCEEEEEEecCCChhhhhhHHH---HHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHH
Q 014225           54 VKVSDLEGKVTALYFSANWYPPCGNFTGV---LVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLET  130 (428)
Q Consensus        54 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~---l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~  130 (428)
                      +.....+||+|+|+|||+||++|+.+.|.   ..++.+.+.++   +.++.|+.|...+....|+               
T Consensus        32 ~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~---fv~ikVD~de~~~l~~~y~---------------   93 (173)
T 3ira_A           32 FEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEA---FVSIKVDREERPDIDNIYM---------------   93 (173)
T ss_dssp             HHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHH---CEEEEEETTTCHHHHHHHH---------------
T ss_pred             HHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhc---CceeeeCCcccCcHHHHHH---------------
Confidence            44445579999999999999999998883   24566666553   7777776665544222222               


Q ss_pred             HHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          131 KKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       131 ~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                       ..+...+++.++|+++|+++   +|+++..
T Consensus        94 -~~~q~~~gv~g~Pt~v~l~~---dG~~v~~  120 (173)
T 3ira_A           94 -TVCQIILGRGGWPLNIIMTP---GKKPFFA  120 (173)
T ss_dssp             -HHHHHHHSCCCSSEEEEECT---TSCEEEE
T ss_pred             -HHHHHHcCCCCCcceeeECC---CCCceee
Confidence             11222359999999999999   9998764

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.10  E-value=8.8e-11  Score=96.84  Aligned_cols=73  Identities=16%  Similarity=0.428  Sum_probs=58.3

Q ss_pred             CCCCEEEEEEecC-------CChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHH
Q 014225           59 LEGKVTALYFSAN-------WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETK  131 (428)
Q Consensus        59 ~~gk~vlv~F~a~-------wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~  131 (428)
                      .+||+++|+|||+       ||++|+.+.|.|.++++++++.   +.++.|+++.... +    .          +..  
T Consensus        22 ~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~---~~~~~vd~~~~~~-~----~----------d~~--   81 (123)
T 1wou_A           22 HNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEG---CVFIYCQVGEKPY-W----K----------DPN--   81 (123)
T ss_dssp             TTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTT---EEEEEEECCCHHH-H----H----------CTT--
T ss_pred             hCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCC---cEEEEEECCCchh-h----h----------chh--
Confidence            3589999999999       9999999999999999888653   8888888764321 0    0          111  


Q ss_pred             HHHHhhcCCCCCceEEEEcC
Q 014225          132 KALNRKFDIEGIPCLVVLQP  151 (428)
Q Consensus       132 ~~l~~~~~v~~~P~~~lid~  151 (428)
                      ..+++.|++.++|+++++++
T Consensus        82 ~~~~~~~~i~~~Pt~~~~~~  101 (123)
T 1wou_A           82 NDFRKNLKVTAVPTLLKYGT  101 (123)
T ss_dssp             CHHHHHHCCCSSSEEEETTS
T ss_pred             HHHHHHCCCCeeCEEEEEcC
Confidence            56788899999999999996

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.10  E-value=3.3e-10  Score=99.16  Aligned_cols=71  Identities=21%  Similarity=0.299  Sum_probs=59.0

Q ss_pred             CCcEEEEEEec-------cCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCcccccc
Q 014225          225 VGKTVGLYFSA-------RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF  297 (428)
Q Consensus       225 ~gk~vll~F~a-------~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~  297 (428)
                      ++.+|||+|||       +||++|+.+.|.|++++++|...   .  ...++.++.|++|.+                  
T Consensus        36 ~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~---~--~~~~v~f~kvD~d~~------------------   92 (178)
T 3ga4_A           36 PGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQ---A--PQSLNLFFTVDVNEV------------------   92 (178)
T ss_dssp             TTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHH---C--TTCCEEEEEEETTTC------------------
T ss_pred             CCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhc---c--CCCCEEEEEEECccC------------------
Confidence            35689999999       49999999999999999999732   0  013588888888866                  


Q ss_pred             CCcchhHHHHhcCcCccceEEEECCCC
Q 014225          298 GDPTIKELTKYFDVQGIPCLVIIGPEG  324 (428)
Q Consensus       298 ~~d~~~~~~~~~~v~~~P~~~lid~~G  324 (428)
                           .+++..|||+++||++++ ++|
T Consensus        93 -----~~la~~~~I~siPtl~~F-~~g  113 (178)
T 3ga4_A           93 -----PQLVKDLKLQNVPHLVVY-PPA  113 (178)
T ss_dssp             -----HHHHHHTTCCSSCEEEEE-CCC
T ss_pred             -----HHHHHHcCCCCCCEEEEE-cCC
Confidence                 789999999999999999 555

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.10  E-value=1.4e-10  Score=97.43  Aligned_cols=67  Identities=9%  Similarity=0.107  Sum_probs=55.4

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      +||+|+|+|||+||++|+.+.|.|.++++++.    ++.++.|++|...                           +.|+
T Consensus        29 ~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~----~v~~~~vd~~~~~---------------------------~~~~   77 (135)
T 2dbc_A           29 KDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP----ETKFVKAIVNSCI---------------------------EHYH   77 (135)
T ss_dssp             SSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS----SEEEEEECCSSSC---------------------------SSCC
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHHHHCC----CcEEEEEEhhcCc---------------------------ccCC
Confidence            46899999999999999999999999999873    2777777665430                           4699


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++|++++++    +|+++.+
T Consensus        78 i~~~Pt~~~~~----~G~~v~~   95 (135)
T 2dbc_A           78 DNCLPTIFVYK----NGQIEGK   95 (135)
T ss_dssp             SSCCSEEEEES----SSSCSEE
T ss_pred             CCCCCEEEEEE----CCEEEEE
Confidence            99999999997    7887754

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=99.09  E-value=5.1e-11  Score=108.48  Aligned_cols=72  Identities=10%  Similarity=0.126  Sum_probs=60.9

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      +|++|||.||++||++|+.+.|.|.+++++|.           ++.++.|+++ +                       ..
T Consensus       119 ~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~-----------~v~f~~vd~~-~-----------------------~~  163 (217)
T 2trc_P          119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYP-----------MVKFCKIRAS-N-----------------------TG  163 (217)
T ss_dssp             TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT-----------TSEEEEEEHH-H-----------------------HT
T ss_pred             CCcEEEEEEECCCCccHHHHHHHHHHHHHHCC-----------CeEEEEEECC-c-----------------------HH
Confidence            46899999999999999999999999988874           4788888876 2                       45


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecccc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~~~  332 (428)
                      ++..|+|.++||++++ ++|+++.+..+
T Consensus       164 l~~~~~i~~~PTl~~~-~~G~~v~~~~G  190 (217)
T 2trc_P          164 AGDRFSSDVLPTLLVY-KGGELISNFIS  190 (217)
T ss_dssp             CSTTSCGGGCSEEEEE-ETTEEEEEETT
T ss_pred             HHHHCCCCCCCEEEEE-ECCEEEEEEeC
Confidence            6778999999999999 69998876443

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=99.09  E-value=2.8e-10  Score=85.18  Aligned_cols=62  Identities=11%  Similarity=0.209  Sum_probs=52.1

Q ss_pred             EEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHh
Q 014225          229 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKY  308 (428)
Q Consensus       229 vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  308 (428)
                      ..|.||++||++|+.+.|.+.++.+++..          ++.++.|+   +                       .++++.
T Consensus         2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~----------~~~~~~v~---~-----------------------~~~~~~   45 (77)
T 1ilo_A            2 MKIQIYGTGCANCQMLEKNAREAVKELGI----------DAEFEKIK---E-----------------------MDQILE   45 (77)
T ss_dssp             EEEEEECSSSSTTHHHHHHHHHHHHHTTC----------CEEEEEEC---S-----------------------HHHHHH
T ss_pred             cEEEEEcCCChhHHHHHHHHHHHHHHcCC----------ceEEEEec---C-----------------------HHHHHH
Confidence            35899999999999999999999888753          36776665   2                       568889


Q ss_pred             cCcCccceEEEECCCCcEEec
Q 014225          309 FDVQGIPCLVIIGPEGKTVTK  329 (428)
Q Consensus       309 ~~v~~~P~~~lid~~G~i~~~  329 (428)
                      |+|.++|++++   +|+++.+
T Consensus        46 ~~v~~~Pt~~~---~G~~~~~   63 (77)
T 1ilo_A           46 AGLTALPGLAV---DGELKIM   63 (77)
T ss_dssp             HTCSSSSCEEE---TTEEEEC
T ss_pred             CCCCcCCEEEE---CCEEEEc
Confidence            99999999988   8998876

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.08  E-value=5.1e-10  Score=110.74  Aligned_cols=96  Identities=14%  Similarity=0.267  Sum_probs=72.4

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|.|||+||++|+++.|.|.++++.+++..   + ...++.++.|+++.+                       ..
T Consensus        21 ~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~---~-~~~~v~~~~Vd~~~~-----------------------~~   73 (382)
T 2r2j_A           21 NADVALVNFYADWCRFSQMLHPIFEEASDVIKEEF---P-NENQVVFARVDCDQH-----------------------SD   73 (382)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC-------CCEEEEEEETTTC-----------------------HH
T ss_pred             cCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhc---C-CCCceEEEEEECCcc-----------------------HH
Confidence            47899999999999999999999999999986320   0 012488888888755                       67


Q ss_pred             HHHhcCcCccceEEEECCCCcEEec-cccchhhcccccCCCCChHHHHHHHHHHHHHHh
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTK-QGRNLINLYQENAYPFTEAKLEFLEKQMEEEAK  362 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~-~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~  362 (428)
                      +++.|+|.++||++++ ++|+++.+ +.+           +.+   .+.|.+.|.+.+.
T Consensus        74 l~~~~~v~~~Pt~~~f-~~G~~~~~~~~G-----------~~~---~~~l~~~i~~~~~  117 (382)
T 2r2j_A           74 IAQRYRISKYPTLKLF-RNGMMMKREYRG-----------QRS---VKALADYIRQQKS  117 (382)
T ss_dssp             HHHHTTCCEESEEEEE-ETTEEEEEECCS-----------CCS---HHHHHHHHHHHHS
T ss_pred             HHHhcCCCcCCEEEEE-eCCcEeeeeecC-----------cch---HHHHHHHHHHhcc
Confidence            9999999999999998 78887753 211           112   3566777777664

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.08  E-value=3.8e-11  Score=100.76  Aligned_cols=77  Identities=18%  Similarity=0.235  Sum_probs=59.5

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      ++ +++|+|||+||++|+.+.|.|.+++++++     +.++.|+++.....               ...+....+++.|+
T Consensus        31 ~~-~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-----v~~~~vd~~~~~~~---------------~~~d~~~~l~~~~~   89 (135)
T 3emx_A           31 QG-DAILAVYSKTCPHCHRDWPQLIQASKEVD-----VPIVMFIWGSLIGE---------------RELSAARLEMNKAG   89 (135)
T ss_dssp             TS-SEEEEEEETTCHHHHHHHHHHHHHHTTCC-----SCEEEEEECTTCCH---------------HHHHHHHHHHHHHT
T ss_pred             CC-cEEEEEECCcCHhhhHhChhHHHHHHHCC-----CEEEEEECCCchhh---------------hhhhhhHHHHHHcC
Confidence            44 99999999999999999999999988874     56788777544321               01223378899999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++|++++++    +|+++.+
T Consensus        90 v~~~Pt~~~~~----~G~~v~~  107 (135)
T 3emx_A           90 VEGTPTLVFYK----EGRIVDK  107 (135)
T ss_dssp             CCSSSEEEEEE----TTEEEEE
T ss_pred             CceeCeEEEEc----CCEEEEE
Confidence            99999888887    7877654

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.08  E-value=2.1e-11  Score=98.00  Aligned_cols=73  Identities=16%  Similarity=0.330  Sum_probs=53.8

Q ss_pred             eecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCcccccc
Q 014225          218 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF  297 (428)
Q Consensus       218 ~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~  297 (428)
                      .+.+++..||+++|+|||+|||+|+.+.|.|.++++++              ..|-+..|..                  
T Consensus         4 ~~~la~~~~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~--------------~~v~~~~~~~------------------   51 (106)
T 3kp8_A            4 AVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQV--------------PYVECSPNGP------------------   51 (106)
T ss_dssp             HHHHHHHHHHHTCEEEECTTCHHHHHHHHHHGGGGGGS--------------CEEESCTTCT------------------
T ss_pred             hhHHHHhcCCCEEEEEECCCCHHHHHHHHHHHHHHHhC--------------CEEEEecccc------------------
Confidence            46677778889999999999999999999998876433              2233332211                  


Q ss_pred             CCcchhHHHHhcCcCccceEEEECCCCcE
Q 014225          298 GDPTIKELTKYFDVQGIPCLVIIGPEGKT  326 (428)
Q Consensus       298 ~~d~~~~~~~~~~v~~~P~~~lid~~G~i  326 (428)
                       .+...++++.|+|.++||+++   +|++
T Consensus        52 -~~~~~~l~~~~~V~~~PT~~i---~G~~   76 (106)
T 3kp8_A           52 -GTPQAQECTEAGITSYPTWII---NGRT   76 (106)
T ss_dssp             -TSCCCHHHHHTTCCSSSEEEE---TTEE
T ss_pred             -cchhHHHHHHcCCeEeCEEEE---CCEE
Confidence             012368999999999999776   7875

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=99.06  E-value=1.6e-10  Score=115.84  Aligned_cols=76  Identities=17%  Similarity=0.238  Sum_probs=60.5

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+|+|||+|||+||++|+.+.|.+.+++++++...  +++..+.+.++.|++|.+                       .+
T Consensus        41 ~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~--g~~~~~~v~f~~VD~d~~-----------------------~~   95 (470)
T 3qcp_A           41 PLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEH--GKDALQIATAAAVNCASE-----------------------VD   95 (470)
T ss_dssp             GGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSS--CSSGGGGCEEEEEETTTC-----------------------HH
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhc--ccccCceEEEEEEECCCC-----------------------HH
Confidence            34899999999999999999999999999886320  000001488999998865                       67


Q ss_pred             HHHhcCcCccceEEEECCCCc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGK  325 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~  325 (428)
                      +++.|+|.++||+++++++|.
T Consensus        96 la~~y~V~~~PTlilf~~gg~  116 (470)
T 3qcp_A           96 LCRKYDINFVPRLFFFYPRDS  116 (470)
T ss_dssp             HHHHTTCCSSCEEEEEEESSC
T ss_pred             HHHHcCCCccCeEEEEECCCc
Confidence            999999999999999976653

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.05  E-value=1.4e-10  Score=95.11  Aligned_cols=66  Identities=9%  Similarity=0.076  Sum_probs=55.3

Q ss_pred             CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225           61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI  140 (428)
Q Consensus        61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v  140 (428)
                      +++|+|+|||+||++|+.+.|.|.++++++.+    +.++-|++|..                           .+.|++
T Consensus        23 ~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~~----v~f~kvd~d~~---------------------------~~~~~v   71 (118)
T 3evi_A           23 DVWVIIHLYRSSIPMCLLVNQHLSLLARKFPE----TKFVKAIVNSC---------------------------IQHYHD   71 (118)
T ss_dssp             TCEEEEEEECTTSHHHHHHHHHHHHHHHHCTT----SEEEEEEGGGT---------------------------STTCCG
T ss_pred             CCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC----CEEEEEEhHHh---------------------------HHHCCC
Confidence            45999999999999999999999999999853    67777766531                           356899


Q ss_pred             CCCceEEEEcCCCCCCCcccc
Q 014225          141 EGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       141 ~~~P~~~lid~~~~dG~i~~~  161 (428)
                      .++||++++.    +|+.+.+
T Consensus        72 ~~~PT~~~fk----~G~~v~~   88 (118)
T 3evi_A           72 NCLPTIFVYK----NGQIEAK   88 (118)
T ss_dssp             GGCSEEEEEE----TTEEEEE
T ss_pred             CCCCEEEEEE----CCEEEEE
Confidence            9999999998    7988765

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.04  E-value=4e-10  Score=90.38  Aligned_cols=78  Identities=9%  Similarity=0.104  Sum_probs=63.2

Q ss_pred             CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225           61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI  140 (428)
Q Consensus        61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v  140 (428)
                      +++++|+|+|+||+||++..|.++++++.  ++   +.++.|.+|...+                    ....+++.|+|
T Consensus        24 ~~~vvi~khatwCgpc~~~~~~~e~~~~~--~~---v~~~~vdVde~r~--------------------~Sn~IA~~~~V   78 (112)
T 3iv4_A           24 NKYVFVLKHSETCPISANAYDQFNKFLYE--RD---MDGYYLIVQQERD--------------------LSDYIAKKTNV   78 (112)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHH--HT---CCEEEEEGGGGHH--------------------HHHHHHHHHTC
T ss_pred             CCCEEEEEECCcCHhHHHHHHHHHHHhcc--CC---ceEEEEEeecCch--------------------hhHHHHHHhCC
Confidence            78999999999999999999999999884  22   7788887765532                    22679999999


Q ss_pred             CC-CceEEEEcCCCCCCCcccccchhhh
Q 014225          141 EG-IPCLVVLQPYDDKDDATLHDGVELI  167 (428)
Q Consensus       141 ~~-~P~~~lid~~~~dG~i~~~~~~~~i  167 (428)
                      .+ .|+++++.    ||+++....-..|
T Consensus        79 ~h~sPq~il~k----~G~~v~~~SH~~I  102 (112)
T 3iv4_A           79 KHESPQAFYFV----NGEMVWNRDHGDI  102 (112)
T ss_dssp             CCCSSEEEEEE----TTEEEEEEEGGGC
T ss_pred             ccCCCeEEEEE----CCEEEEEeecccc
Confidence            95 99999998    8988877544433

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.02  E-value=1.1e-09  Score=95.81  Aligned_cols=68  Identities=24%  Similarity=0.352  Sum_probs=56.3

Q ss_pred             CCCEEEEEEec-------CCChhhhhhHHHHHHHHHHHhcCC--CcEEEEEEecCCChHHHHHHHhcCCCceeccCChHH
Q 014225           60 EGKVTALYFSA-------NWYPPCGNFTGVLVDVYEELRNNG--SDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLET  130 (428)
Q Consensus        60 ~gk~vlv~F~a-------~wC~~C~~~~p~l~~l~~~~~~~~--~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~  130 (428)
                      ++.+|+|+|||       .||+||+.+.|.+.++++++....  .++.+.-|++|..                       
T Consensus        36 ~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~-----------------------   92 (178)
T 3ga4_A           36 PGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEV-----------------------   92 (178)
T ss_dssp             TTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTC-----------------------
T ss_pred             CCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccC-----------------------
Confidence            35689999999       499999999999999999997210  1377777666544                       


Q ss_pred             HHHHHhhcCCCCCceEEEEcC
Q 014225          131 KKALNRKFDIEGIPCLVVLQP  151 (428)
Q Consensus       131 ~~~l~~~~~v~~~P~~~lid~  151 (428)
                       ..+++.|+|+++|+++++.+
T Consensus        93 -~~la~~~~I~siPtl~~F~~  112 (178)
T 3ga4_A           93 -PQLVKDLKLQNVPHLVVYPP  112 (178)
T ss_dssp             -HHHHHHTTCCSSCEEEEECC
T ss_pred             -HHHHHHcCCCCCCEEEEEcC
Confidence             78999999999999999996

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=98.58  E-value=3e-11  Score=95.84  Aligned_cols=70  Identities=23%  Similarity=0.432  Sum_probs=58.3

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+|+++|.||++||++|+.+.|.+++++++++++   +.++.|+.|..                        ..+++.|+
T Consensus        18 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~------------------------~~~~~~~~   70 (106)
T 2yj7_A           18 SDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGK---VKVVKVNVDEN------------------------PNTAAQYG   70 (106)
Confidence            4789999999999999999999999999998753   67776655432                        56788899


Q ss_pred             CCCCceEEEEcCCCCCCCccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATL  160 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~  160 (428)
                      +.++|+++++ +   +|+++.
T Consensus        71 v~~~Pt~~~~-~---~g~~~~   87 (106)
T 2yj7_A           71 IRSIPTLLLF-K---NGQVVD   87 (106)
Confidence            9999999999 5   787654

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.01  E-value=1.1e-09  Score=112.41  Aligned_cols=69  Identities=17%  Similarity=0.415  Sum_probs=61.0

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|.|||+||++|+++.|.|.++++.+++.         ++.++.|+++.+                       ..
T Consensus        30 ~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~---------~v~~~~vd~~~~-----------------------~~   77 (504)
T 2b5e_A           30 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEK---------NITLAQIDCTEN-----------------------QD   77 (504)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---------TCEEEEEETTTC-----------------------HH
T ss_pred             cCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccC---------CeEEEEEECCCC-----------------------HH
Confidence            4789999999999999999999999999998754         589999988865                       67


Q ss_pred             HHHhcCcCccceEEEECCCCcE
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKT  326 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i  326 (428)
                      +++.|+|.++||++++ ++|+.
T Consensus        78 l~~~~~v~~~Pt~~~~-~~g~~   98 (504)
T 2b5e_A           78 LCMEHNIPGFPSLKIF-KNSDV   98 (504)
T ss_dssp             HHHHTTCCSSSEEEEE-ETTCT
T ss_pred             HHHhcCCCcCCEEEEE-eCCcc
Confidence            9999999999999999 56663

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.01  E-value=5.9e-10  Score=108.91  Aligned_cols=71  Identities=15%  Similarity=0.214  Sum_probs=60.4

Q ss_pred             CCcEEEEEEeccCChhHHhhhHH-------HHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCcccccc
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPK-------LLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF  297 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~-------l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~  297 (428)
                      .+++++|+|||+||+ |+.++|.       ++++++.+++.         ++.++.|+++.+                  
T Consensus        27 ~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~---------~v~~~~Vd~~~~------------------   78 (350)
T 1sji_A           27 KYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHK---------DIGFVMVDAKKE------------------   78 (350)
T ss_dssp             TCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGS---------SEEEEEEETTTT------------------
T ss_pred             hCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhc---------CcEEEEEeCCCC------------------
Confidence            468999999999999 9989998       78888877654         689999988865                  


Q ss_pred             CCcchhHHHHhcCcCccceEEEECCCCcEEec
Q 014225          298 GDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK  329 (428)
Q Consensus       298 ~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~  329 (428)
                           ..+++.|+|.++||++++ ++|++...
T Consensus        79 -----~~l~~~~~v~~~Pt~~~~-~~g~~~~~  104 (350)
T 1sji_A           79 -----AKLAKKLGFDEEGSLYVL-KGDRTIEF  104 (350)
T ss_dssp             -----HHHHHHHTCCSTTEEEEE-ETTEEEEE
T ss_pred             -----HHHHHhcCCCccceEEEE-ECCcEEEe
Confidence                 679999999999999999 88885543

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.00  E-value=7.9e-12  Score=100.57  Aligned_cols=69  Identities=12%  Similarity=0.279  Sum_probs=50.9

Q ss_pred             EEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHH
Q 014225           53 QVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKK  132 (428)
Q Consensus        53 ~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~  132 (428)
                      .+.+++..||+++|+|||+||++|+.+.|.|.+++++++       .  |.++.+..                .+..  .
T Consensus         4 ~~~la~~~~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~-------~--v~~~~~~~----------------~~~~--~   56 (106)
T 3kp8_A            4 AVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVP-------Y--VECSPNGP----------------GTPQ--A   56 (106)
T ss_dssp             HHHHHHHHHHHTCEEEECTTCHHHHHHHHHHGGGGGGSC-------E--EESCTTCT----------------TSCC--C
T ss_pred             hhHHHHhcCCCEEEEEECCCCHHHHHHHHHHHHHHHhCC-------E--EEEecccc----------------cchh--H
Confidence            456677778999999999999999999999998886542       2  33332100                0011  6


Q ss_pred             HHHhhcCCCCCceEEE
Q 014225          133 ALNRKFDIEGIPCLVV  148 (428)
Q Consensus       133 ~l~~~~~v~~~P~~~l  148 (428)
                      .+++.|+|.++|++++
T Consensus        57 ~l~~~~~V~~~PT~~i   72 (106)
T 3kp8_A           57 QECTEAGITSYPTWII   72 (106)
T ss_dssp             HHHHHTTCCSSSEEEE
T ss_pred             HHHHHcCCeEeCEEEE
Confidence            7899999999999776

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.00  E-value=8.4e-10  Score=112.40  Aligned_cols=71  Identities=18%  Similarity=0.337  Sum_probs=62.3

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      +++++|+|||+||++|+++.|.|.++++.+++.          +.++.|+++.+                       ..+
T Consensus        21 ~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~----------v~~~~vd~~~~-----------------------~~l   67 (481)
T 3f8u_A           21 AGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGI----------VPLAKVDCTAN-----------------------TNT   67 (481)
T ss_dssp             SSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT----------CCEEEEETTTC-----------------------HHH
T ss_pred             CCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCc----------eEEEEEECCCC-----------------------HHH
Confidence            489999999999999999999999999998754          77888888865                       689


Q ss_pred             HHhcCcCccceEEEECCCCcEEecc
Q 014225          306 TKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       306 ~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      ++.|+|.++||++++ ++|+.+..+
T Consensus        68 ~~~~~v~~~Ptl~~~-~~g~~~~~~   91 (481)
T 3f8u_A           68 CNKYGVSGYPTLKIF-RDGEEAGAY   91 (481)
T ss_dssp             HHHTTCCEESEEEEE-ETTEEEEEC
T ss_pred             HHhcCCCCCCEEEEE-eCCceeeee
Confidence            999999999999999 888766553

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=98.99  E-value=3.8e-10  Score=85.95  Aligned_cols=60  Identities=23%  Similarity=0.436  Sum_probs=51.8

Q ss_pred             CEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCC
Q 014225           62 KVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE  141 (428)
Q Consensus        62 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~  141 (428)
                      .++++.||++||++|+...|.|++++++++++   +.++.|++|.+                        ..+++.|++.
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~------------------------~~~~~~~~v~   55 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPDA---VEVEYINVMEN------------------------PQKAMEYGIM   55 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCSSS---EEEEEEESSSS------------------------CCTTTSTTTC
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcCCc---eEEEEEECCCC------------------------HHHHHHCCCc
Confidence            57899999999999999999999999998743   88998887654                        3456789999


Q ss_pred             CCceEEE
Q 014225          142 GIPCLVV  148 (428)
Q Consensus       142 ~~P~~~l  148 (428)
                      ++|++++
T Consensus        56 ~~Pt~~~   62 (85)
T 1fo5_A           56 AVPTIVI   62 (85)
T ss_dssp             CSSEEEE
T ss_pred             ccCEEEE
Confidence            9999988

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=98.98  E-value=3.3e-10  Score=86.29  Aligned_cols=59  Identities=15%  Similarity=0.287  Sum_probs=50.7

Q ss_pred             EEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCC
Q 014225           63 VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEG  142 (428)
Q Consensus        63 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~  142 (428)
                      ++++.||++||++|+...|.+++++++++++   +.++.|++|.+                        ..+++.|++.+
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~------------------------~~~~~~~~v~~   55 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDK---IDVEKIDIMVD------------------------REKAIEYGLMA   55 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHCSS---CCEEEECTTTC------------------------GGGGGGTCSSC
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhcCC---eEEEEEECCCC------------------------HHHHHhCCcee
Confidence            4689999999999999999999999998753   78888877644                        45678899999


Q ss_pred             CceEEE
Q 014225          143 IPCLVV  148 (428)
Q Consensus       143 ~P~~~l  148 (428)
                      +|++++
T Consensus        56 ~Pt~~~   61 (85)
T 1nho_A           56 VPAIAI   61 (85)
T ss_dssp             SSEEEE
T ss_pred             eCEEEE
Confidence            999988

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=98.97  E-value=9.6e-10  Score=110.24  Aligned_cols=68  Identities=18%  Similarity=0.223  Sum_probs=58.0

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCC-----cEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHH
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGS-----DFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKAL  134 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~-----~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l  134 (428)
                      .+|+|+|+|||+||++|+.+.|.+.++++++++...     ++.++.|++|..                        ..+
T Consensus        41 ~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~------------------------~~l   96 (470)
T 3qcp_A           41 PLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASE------------------------VDL   96 (470)
T ss_dssp             GGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTC------------------------HHH
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCC------------------------HHH
Confidence            348999999999999999999999999999975421     378888776644                        678


Q ss_pred             HhhcCCCCCceEEEEcC
Q 014225          135 NRKFDIEGIPCLVVLQP  151 (428)
Q Consensus       135 ~~~~~v~~~P~~~lid~  151 (428)
                      ++.|+|.++|+++++++
T Consensus        97 a~~y~V~~~PTlilf~~  113 (470)
T 3qcp_A           97 CRKYDINFVPRLFFFYP  113 (470)
T ss_dssp             HHHTTCCSSCEEEEEEE
T ss_pred             HHHcCCCccCeEEEEEC
Confidence            99999999999999986

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=98.96  E-value=9.1e-11  Score=97.13  Aligned_cols=71  Identities=24%  Similarity=0.476  Sum_probs=58.7

Q ss_pred             CCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhc
Q 014225           59 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF  138 (428)
Q Consensus        59 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~  138 (428)
                      .++|+++|+||++||++|+.+.|.|.+++++++  +  +.++.|++|..                        ..+++.|
T Consensus        34 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~--v~~~~v~~~~~------------------------~~~~~~~   85 (130)
T 1wmj_A           34 EAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP--G--AVFLKVDVDEL------------------------KEVAEKY   85 (130)
T ss_dssp             TTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT--T--BCCEECCTTTS------------------------GGGHHHH
T ss_pred             hcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC--C--CEEEEEeccch------------------------HHHHHHc
Confidence            468999999999999999999999999999985  2  77777766543                        4577889


Q ss_pred             CCCCCceEEEEcCCCCCCCcccc
Q 014225          139 DIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       139 ~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      ++.++|+++++ +   +|+++.+
T Consensus        86 ~v~~~Pt~~~~-~---~g~~~~~  104 (130)
T 1wmj_A           86 NVEAMPTFLFI-K---DGAEADK  104 (130)
T ss_dssp             TCCSSCCCCBC-T---TTTCCBC
T ss_pred             CCCccceEEEE-e---CCeEEEE
Confidence            99999998887 5   8877644

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=98.95  E-value=4.3e-10  Score=95.30  Aligned_cols=69  Identities=13%  Similarity=0.292  Sum_probs=49.5

Q ss_pred             CCEEEEEEecCC--ChhhhhhHHHHHHHHHHHhcCCCcEE--EEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHh
Q 014225           61 GKVTALYFSANW--YPPCGNFTGVLVDVYEELRNNGSDFE--VVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR  136 (428)
Q Consensus        61 gk~vlv~F~a~w--C~~C~~~~p~l~~l~~~~~~~~~~~~--ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~  136 (428)
                      ++.++|+||++|  |++|+.+.|.|.+++++| ++   +.  ++.|++|.                        ...+++
T Consensus        34 ~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~~---v~~~~~~Vd~d~------------------------~~~la~   85 (142)
T 2es7_A           34 VGDGVILLSSDPRRTPEVSDNPVMIAELLREF-PQ---FDWQVAVADLEQ------------------------SEAIGD   85 (142)
T ss_dssp             CCSEEEEECCCSCC----CCHHHHHHHHHHTC-TT---SCCEEEEECHHH------------------------HHHHHH
T ss_pred             CCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-cc---cceeEEEEECCC------------------------CHHHHH
Confidence            345788999887  999999999999999998 43   66  77775532                        278999


Q ss_pred             hcCCCCCceEEEEcCCCCCCCcccc
Q 014225          137 KFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       137 ~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      .|+|.++||++++ +   +|+++.+
T Consensus        86 ~~~V~~iPT~~~f-k---~G~~v~~  106 (142)
T 2es7_A           86 RFNVRRFPATLVF-T---DGKLRGA  106 (142)
T ss_dssp             TTTCCSSSEEEEE-S---CC----C
T ss_pred             hcCCCcCCeEEEE-e---CCEEEEE
Confidence            9999999999999 5   8987654

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=98.94  E-value=6.5e-10  Score=102.71  Aligned_cols=69  Identities=10%  Similarity=0.183  Sum_probs=56.8

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      +|++|||+|||+||++|+.+.|.|.+++++|.+    +.++.|+++.                         ..+++.|+
T Consensus       132 ~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~----v~f~kVd~d~-------------------------~~l~~~~~  182 (245)
T 1a0r_P          132 KITTIVVHIYEDGIKGCDALNSSLICLAAEYPM----VKFCKIKASN-------------------------TGAGDRFS  182 (245)
T ss_dssp             TTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTT----SEEEEEEHHH-------------------------HCCTTSSC
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHHHHCCC----CEEEEEeCCc-------------------------HHHHHHCC
Confidence            489999999999999999999999999999853    6777775532                         23556799


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++||++++.    +|+++..
T Consensus       183 I~~~PTll~~~----~G~~v~~  200 (245)
T 1a0r_P          183 SDVLPTLLVYK----GGELLSN  200 (245)
T ss_dssp             TTTCSEEEEEE----TTEEEEE
T ss_pred             CCCCCEEEEEE----CCEEEEE
Confidence            99999998886    7987654

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=98.93  E-value=5e-09  Score=89.66  Aligned_cols=94  Identities=12%  Similarity=0.213  Sum_probs=65.9

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcc
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT  301 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~  301 (428)
                      .||+|+|+|+++||++|+.+....   .++.+.+++          ++.++.+.++...                     
T Consensus        41 ~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~----------~fv~v~~d~~~~~---------------------   89 (153)
T 2dlx_A           41 QNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE----------HFIFWQVYHDSEE---------------------   89 (153)
T ss_dssp             HTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH----------TEEEEEEESSSHH---------------------
T ss_pred             cCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHc----------CeEEEEEecCCHh---------------------
Confidence            489999999999999999986654   345555544          3667777665321                     


Q ss_pred             hhHHHHhcCcCccceEEEECCC-CcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhcC
Q 014225          302 IKELTKYFDVQGIPCLVIIGPE-GKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNL  364 (428)
Q Consensus       302 ~~~~~~~~~v~~~P~~~lid~~-G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~  364 (428)
                      ...+.+.|++.++|++++||++ |+.+...++            .+   .+++.+.|++.+...
T Consensus        90 ~~~l~~~y~v~~~P~~~fld~~~G~~l~~~~g------------~~---~~~fl~~L~~~l~~~  138 (153)
T 2dlx_A           90 GQRYIQFYKLGDFPYVSILDPRTGQKLVEWHQ------------LD---VSSFLDQVTGFLGEH  138 (153)
T ss_dssp             HHHHHHHHTCCSSSEEEEECTTTCCCCEEESS------------CC---HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCCCEEEEEeCCCCcEeeecCC------------CC---HHHHHHHHHHHHHhc
Confidence            3568889999999999999998 766544221            11   256666666666543

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=98.92  E-value=4.5e-09  Score=103.34  Aligned_cols=73  Identities=10%  Similarity=0.063  Sum_probs=58.7

Q ss_pred             CCcEEEEEEeccCChhHHhhh------HHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccC
Q 014225          225 VGKTVGLYFSARWCIPCEKFM------PKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFG  298 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~------~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~  298 (428)
                      .+++++|.|||+||++|....      |.++++++.++..         ++.++.|+++.+                   
T Consensus        29 ~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~---------~v~~~~Vd~~~~-------------------   80 (367)
T 3us3_A           29 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDK---------GVGFGLVDSEKD-------------------   80 (367)
T ss_dssp             HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTT---------TEEEEEEETTTT-------------------
T ss_pred             hCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcC---------CceEEEEeCccc-------------------
Confidence            368999999999999973322      5788888887644         688998888865                   


Q ss_pred             CcchhHHHHhcCcCccceEEEECCCCcEEecc
Q 014225          299 DPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       299 ~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                          ..+++.|+|+++||++++ ++|+++...
T Consensus        81 ----~~l~~~~~V~~~PTl~~f-~~G~~~~y~  107 (367)
T 3us3_A           81 ----AAVAKKLGLTEEDSIYVF-KEDEVIEYD  107 (367)
T ss_dssp             ----HHHHHHHTCCSTTEEEEE-ETTEEEECC
T ss_pred             ----HHHHHHcCCCcCceEEEE-ECCcEEEeC
Confidence                689999999999999999 688876443

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=98.92  E-value=1e-09  Score=101.68  Aligned_cols=65  Identities=12%  Similarity=0.200  Sum_probs=52.2

Q ss_pred             CcEEEEEEeccC--ChhHHhhhHHHHHHHHHHHhhhhhcCCCCCC--EEEEEEEcCCCHHHHHHHHhcCCccccccCCcc
Q 014225          226 GKTVGLYFSARW--CIPCEKFMPKLLSIYQKIKQNLVEKGDALED--FEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT  301 (428)
Q Consensus       226 gk~vll~F~a~w--C~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~--~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~  301 (428)
                      +++|+|.||++|  |++|+.+.+.+.++++.+...       ...  +.++.++.|.+                      
T Consensus        25 ~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~-------~~~~~v~~~~vd~d~~----------------------   75 (243)
T 2hls_A           25 VNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTR-------NGGKLLKLNVYYRESD----------------------   75 (243)
T ss_dssp             CSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEE-------TTEESEEEEEEETTTT----------------------
T ss_pred             CCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCC-------CCCceeEEEEecCCcC----------------------
Confidence            367899999999  999999999999998874210       011  77777777754                      


Q ss_pred             hhHHHHhcCcCccceEEEE
Q 014225          302 IKELTKYFDVQGIPCLVII  320 (428)
Q Consensus       302 ~~~~~~~~~v~~~P~~~li  320 (428)
                       .++++.|||.++||+.++
T Consensus        76 -~~~~~~~gv~~~Pt~~i~   93 (243)
T 2hls_A           76 -SDKFSEFKVERVPTVAFL   93 (243)
T ss_dssp             -HHHHHHTTCCSSSEEEET
T ss_pred             -HHHHHhcCCCcCCEEEEE
Confidence             678999999999999988

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=98.92  E-value=2.4e-10  Score=92.75  Aligned_cols=75  Identities=15%  Similarity=0.182  Sum_probs=53.4

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      +...+||+|||+||++|+.+.+.+...++.... +..+.++.|+++.+..                      ..++..|+
T Consensus        17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~-~~~~~l~~vdv~~~~~----------------------~~la~~~~   73 (116)
T 3dml_A           17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDE-GRAAPVQRLQMRDPLP----------------------PGLELARP   73 (116)
T ss_dssp             --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHH-HHHSCEEEEETTSCCC----------------------TTCBCSSC
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhh-cccceEEEEECCCCCc----------------------hhHHHHCC
Confidence            456899999999999999998766554433211 0125677777776532                      35567789


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      |.++||+++++    +|+.+.+
T Consensus        74 V~g~PT~i~f~----~G~ev~R   91 (116)
T 3dml_A           74 VTFTPTFVLMA----GDVESGR   91 (116)
T ss_dssp             CCSSSEEEEEE----TTEEEEE
T ss_pred             CCCCCEEEEEE----CCEEEee
Confidence            99999999999    7977764

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=98.89  E-value=3.3e-09  Score=79.21  Aligned_cols=55  Identities=13%  Similarity=0.110  Sum_probs=46.7

Q ss_pred             EEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCC
Q 014225           64 TALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGI  143 (428)
Q Consensus        64 vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~  143 (428)
                      ..|+||++||++|+.+.|.+++++++++..   +.++.|+     .                      ..+++.|++.++
T Consensus         2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~~---~~~~~v~-----~----------------------~~~~~~~~v~~~   51 (77)
T 1ilo_A            2 MKIQIYGTGCANCQMLEKNAREAVKELGID---AEFEKIK-----E----------------------MDQILEAGLTAL   51 (77)
T ss_dssp             EEEEEECSSSSTTHHHHHHHHHHHHHTTCC---EEEEEEC-----S----------------------HHHHHHHTCSSS
T ss_pred             cEEEEEcCCChhHHHHHHHHHHHHHHcCCc---eEEEEec-----C----------------------HHHHHHCCCCcC
Confidence            468999999999999999999999998653   7777663     1                      678889999999


Q ss_pred             ceEEE
Q 014225          144 PCLVV  148 (428)
Q Consensus       144 P~~~l  148 (428)
                      |++++
T Consensus        52 Pt~~~   56 (77)
T 1ilo_A           52 PGLAV   56 (77)
T ss_dssp             SCEEE
T ss_pred             CEEEE
Confidence            99988

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=98.89  E-value=7.6e-10  Score=100.67  Aligned_cols=69  Identities=12%  Similarity=0.177  Sum_probs=57.6

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      +|++|+|+||++||++|+.+.|.|.+++++|.    ++.++.|+++   .                      ..+++.|+
T Consensus       119 ~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~----~v~f~~vd~~---~----------------------~~l~~~~~  169 (217)
T 2trc_P          119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYP----MVKFCKIRAS---N----------------------TGAGDRFS  169 (217)
T ss_dssp             TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT----TSEEEEEEHH---H----------------------HTCSTTSC
T ss_pred             CCcEEEEEEECCCCccHHHHHHHHHHHHHHCC----CeEEEEEECC---c----------------------HHHHHHCC
Confidence            46899999999999999999999999999984    2778877654   1                      45667899


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++||++++.    +|+++..
T Consensus       170 i~~~PTl~~~~----~G~~v~~  187 (217)
T 2trc_P          170 SDVLPTLLVYK----GGELISN  187 (217)
T ss_dssp             GGGCSEEEEEE----TTEEEEE
T ss_pred             CCCCCEEEEEE----CCEEEEE
Confidence            99999999996    7887644

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=98.80  E-value=1.2e-08  Score=81.53  Aligned_cols=65  Identities=22%  Similarity=0.435  Sum_probs=54.2

Q ss_pred             EEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHH
Q 014225          228 TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTK  307 (428)
Q Consensus       228 ~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  307 (428)
                      .+++.||++||++|....+.|.++.+++            ++.+..|++|.+                       .++..
T Consensus        30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~------------~i~~~~vDId~d-----------------------~~l~~   74 (107)
T 2fgx_A           30 RKLVVYGREGCHLCEEMIASLRVLQKKS------------WFELEVINIDGN-----------------------EHLTR   74 (107)
T ss_dssp             CCEEEEECSSCHHHHHHHHHHHHHHHHS------------CCCCEEEETTTC-----------------------HHHHH
T ss_pred             cEEEEEeCCCChhHHHHHHHHHHHHHhc------------CCeEEEEECCCC-----------------------HHHHH
Confidence            5688999999999999999999988765            367788888866                       56788


Q ss_pred             hcCcCccceEEEECCCCcEEec
Q 014225          308 YFDVQGIPCLVIIGPEGKTVTK  329 (428)
Q Consensus       308 ~~~v~~~P~~~lid~~G~i~~~  329 (428)
                      .|++. +|+++++ .+|+++..
T Consensus        75 ~ygv~-VP~l~~~-~dG~~v~~   94 (107)
T 2fgx_A           75 LYNDR-VPVLFAV-NEDKELCH   94 (107)
T ss_dssp             HSTTS-CSEEEET-TTTEEEEC
T ss_pred             HhCCC-CceEEEE-ECCEEEEe
Confidence            89997 9999888 78988743

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=98.80  E-value=1.1e-08  Score=85.35  Aligned_cols=92  Identities=10%  Similarity=0.088  Sum_probs=69.6

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      +++|+++||++ |++|+.+.|.|.+++++|+++          +.++.|++|..                       ..+
T Consensus        23 ~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk----------~~f~~vd~d~~-----------------------~~~   68 (133)
T 2djk_A           23 GIPLAYIFAET-AEERKELSDKLKPIAEAQRGV----------INFGTIDAKAF-----------------------GAH   68 (133)
T ss_dssp             TSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTT----------SEEEEECTTTT-----------------------GGG
T ss_pred             CCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCe----------EEEEEEchHHh-----------------------HHH
Confidence            46799999999 899999999999999999765          78888888754                       568


Q ss_pred             HHhcCcCc--cceEEEECC-CCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhcC
Q 014225          306 TKYFDVQG--IPCLVIIGP-EGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNL  364 (428)
Q Consensus       306 ~~~~~v~~--~P~~~lid~-~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~  364 (428)
                      +..|||++  +|++++++. +|+. ++..     ..|    .++.   +.|.+.+++.+.+.
T Consensus        69 a~~~gi~~~~iPtl~i~~~~~g~~-~~~~-----~~g----~~~~---~~l~~fi~~~l~Gk  117 (133)
T 2djk_A           69 AGNLNLKTDKFPAFAIQEVAKNQK-FPFD-----QEK----EITF---EAIKAFVDDFVAGK  117 (133)
T ss_dssp             TTTTTCCSSSSSEEEEECTTTCCB-CCCC-----SSS----CCCH---HHHHHHHHHHHHTC
T ss_pred             HHHcCCCcccCCEEEEEecCcCcc-cCCC-----Ccc----ccCH---HHHHHHHHHHHcCC
Confidence            89999999  999999964 4665 3311     001    1233   56677777777654

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=98.76  E-value=6.4e-08  Score=87.79  Aligned_cols=94  Identities=16%  Similarity=0.215  Sum_probs=60.4

Q ss_pred             eecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC----CH-------------
Q 014225          218 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR----DQ-------------  280 (428)
Q Consensus       218 ~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~----~~-------------  280 (428)
                      .+.+....++++++.||++|||+|+++.|.|.++.+    .         ++.|+.+....    +.             
T Consensus        78 ~~~~g~~~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~----~---------~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d  144 (216)
T 1eej_A           78 MIVYKAPQEKHVITVFTDITCGYCHKLHEQMADYNA----L---------GITVRYLAFPRQGLDSDAEKEMKAIWCAKD  144 (216)
T ss_dssp             SEEECCTTCCEEEEEEECTTCHHHHHHHTTHHHHHH----T---------TEEEEEEECCTTCSSSHHHHHHHHHHTSSS
T ss_pred             CeeecCCCCCEEEEEEECCCCHHHHHHHHHHHHHHh----C---------CcEEEEEECCccCCCchHHHHHHHHHhccC
Confidence            344555568999999999999999999999888754    2         46777665531    11             


Q ss_pred             --HHHHHHHhcCCcc--ccccCCcchhHHHHhcCcCccceEEEECCCCcE
Q 014225          281 --TSFESYFGTMPWL--ALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKT  326 (428)
Q Consensus       281 --~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i  326 (428)
                        ..+..++...+.-  ......+....+++.|||.++|++++  .+|+.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~gV~gtPt~v~--~dG~~  192 (216)
T 1eej_A          145 KNKAFDDVMAGKSVAPASCDVDIADHYALGVQLGVSGTPAVVL--SNGTL  192 (216)
T ss_dssp             HHHHHHHHHTTCCCCCCCCSCCHHHHHHHHHHHTCCSSSEEEC--TTSCE
T ss_pred             HHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHcCCCccCEEEE--cCCeE
Confidence              1233333322210  11223345677899999999999854  35654

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=98.74  E-value=7.3e-08  Score=84.06  Aligned_cols=39  Identities=13%  Similarity=0.161  Sum_probs=34.0

Q ss_pred             eecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHH
Q 014225          218 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIK  256 (428)
Q Consensus       218 ~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~  256 (428)
                      ...+....++++|+.||.+|||+|..+.|.|.++.+++.
T Consensus        14 ~~~~G~~~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~   52 (175)
T 3gyk_A           14 APVLGNPEGDVTVVEFFDYNCPYCRRAMAEVQGLVDADP   52 (175)
T ss_dssp             SCEEECTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT
T ss_pred             CCCcCCCCCCEEEEEEECCCCccHHHHHHHHHHHHHhCC
Confidence            456677778999999999999999999999999888754

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=98.73  E-value=2.1e-08  Score=77.18  Aligned_cols=58  Identities=19%  Similarity=0.316  Sum_probs=45.9

Q ss_pred             EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225          230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF  309 (428)
Q Consensus       230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  309 (428)
                      ++.||++||++|+...|.|.++..++               +..|++|.+                       .+++..|
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~---------------~~~vdid~~-----------------------~~l~~~~   44 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA---------------FFSVFIDDD-----------------------AALESAY   44 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC---------------EEEEECTTC-----------------------HHHHHHH
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh---------------eEEEECCCC-----------------------HHHHHHh
Confidence            67899999999999999887653211               456778765                       5688889


Q ss_pred             CcCccceEEEECCCCcEEe
Q 014225          310 DVQGIPCLVIIGPEGKTVT  328 (428)
Q Consensus       310 ~v~~~P~~~lid~~G~i~~  328 (428)
                      |++ +|++++  .+|+.+.
T Consensus        45 g~~-vPtl~~--~~G~~v~   60 (87)
T 1ttz_A           45 GLR-VPVLRD--PMGRELD   60 (87)
T ss_dssp             TTT-CSEEEC--TTCCEEE
T ss_pred             CCC-cCeEEE--ECCEEEe
Confidence            998 999987  7798875

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=98.71  E-value=4.4e-08  Score=83.78  Aligned_cols=72  Identities=14%  Similarity=0.206  Sum_probs=52.9

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHh
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR  136 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~  136 (428)
                      +||+|+|+|+++||.+|+.+....   .++.+.++++   +.++-+++|....                      ..+.+
T Consensus        41 ~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~---fv~v~~d~~~~~~----------------------~~l~~   95 (153)
T 2dlx_A           41 QNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREH---FIFWQVYHDSEEG----------------------QRYIQ   95 (153)
T ss_dssp             HTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHT---EEEEEEESSSHHH----------------------HHHHH
T ss_pred             cCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcC---eEEEEEecCCHhH----------------------HHHHH
Confidence            489999999999999999985433   3344444443   6666655533211                      67889


Q ss_pred             hcCCCCCceEEEEcCCCCC-CCcc
Q 014225          137 KFDIEGIPCLVVLQPYDDK-DDAT  159 (428)
Q Consensus       137 ~~~v~~~P~~~lid~~~~d-G~i~  159 (428)
                      .|++.++|+++|||+   + |+.+
T Consensus        96 ~y~v~~~P~~~fld~---~~G~~l  116 (153)
T 2dlx_A           96 FYKLGDFPYVSILDP---RTGQKL  116 (153)
T ss_dssp             HHTCCSSSEEEEECT---TTCCCC
T ss_pred             HcCCCCCCEEEEEeC---CCCcEe
Confidence            999999999999999   8 7554

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=98.69  E-value=1.1e-08  Score=77.44  Aligned_cols=65  Identities=18%  Similarity=0.253  Sum_probs=48.3

Q ss_pred             EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225          230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF  309 (428)
Q Consensus       230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  309 (428)
                      ++.||++|||+|+...+.|.++.+++            ++.+..+.+|.+.                    ...++.+.|
T Consensus         4 ~~~f~~~~C~~C~~~~~~l~~~~~~~------------~~~~~~~~v~~~~--------------------~~~~~~~~~   51 (80)
T 2k8s_A            4 KAIFYHAGCPVCVSAEQAVANAIDPS------------KYTVEIVHLGTDK--------------------ARIAEAEKA   51 (80)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHSCTT------------TEEEEEEETTTCS--------------------STHHHHHHH
T ss_pred             eEEEeCCCCCchHHHHHHHHHHHHhc------------CCeEEEEEecCCh--------------------hhHHHHHHc
Confidence            67789999999999999998876543            3455556665321                    025677889


Q ss_pred             CcCccceEEEECCCCcEEec
Q 014225          310 DVQGIPCLVIIGPEGKTVTK  329 (428)
Q Consensus       310 ~v~~~P~~~lid~~G~i~~~  329 (428)
                      |+.++|++++   +|+++..
T Consensus        52 gv~~vPt~~i---~g~~~~~   68 (80)
T 2k8s_A           52 GVKSVPALVI---DGAAFHI   68 (80)
T ss_dssp             TCCEEEEEEE---TTEEEEE
T ss_pred             CCCcCCEEEE---CCEEEEe
Confidence            9999999876   7887654

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=98.67  E-value=1.6e-07  Score=86.77  Aligned_cols=70  Identities=11%  Similarity=0.148  Sum_probs=56.0

Q ss_pred             CCcEEEEEEe--ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcch
Q 014225          225 VGKTVGLYFS--ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI  302 (428)
Q Consensus       225 ~gk~vll~F~--a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~  302 (428)
                      .+++|+|.||  ||||+    +.|.|.++++.|+..       .+++.|+.|++|...                  ....
T Consensus        32 ~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~-------~~~v~~akVD~d~~g------------------~~~n   82 (248)
T 2c0g_A           32 RFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKA-------TKDLLIATVGVKDYG------------------ELEN   82 (248)
T ss_dssp             TSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHH-------CSSEEEEEEEECSST------------------TCTT
T ss_pred             cCCCEEEEEECCCCCCc----cHHHHHHHHHHHhcc-------CCCeEEEEEECCccc------------------cccc
Confidence            4589999999  99998    999999999999752       136889999987500                  0002


Q ss_pred             hHHHHhcCcC--ccceEEEECCCCc
Q 014225          303 KELTKYFDVQ--GIPCLVIIGPEGK  325 (428)
Q Consensus       303 ~~~~~~~~v~--~~P~~~lid~~G~  325 (428)
                      .++++.|+|.  ++||++++ + |+
T Consensus        83 ~~la~~~~V~~~~~PTl~~F-~-G~  105 (248)
T 2c0g_A           83 KALGDRYKVDDKNFPSIFLF-K-GN  105 (248)
T ss_dssp             HHHHHHTTCCTTSCCEEEEE-S-SS
T ss_pred             HHHHHHhCCCcCCCCeEEEE-e-CC
Confidence            6899999999  99999999 5 76

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=98.59  E-value=1.5e-07  Score=83.76  Aligned_cols=44  Identities=25%  Similarity=0.224  Sum_probs=37.8

Q ss_pred             cCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC
Q 014225          224 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD  277 (428)
Q Consensus       224 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d  277 (428)
                      ..++++|+.||++|||+|..+.|.+.++.+++.+          ++.++.+.++
T Consensus        23 ~~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~----------~v~~~~~~~~   66 (195)
T 3hd5_A           23 TPGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQ----------DVVLKQVPIA   66 (195)
T ss_dssp             STTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCT----------TEEEEEEECC
T ss_pred             CCCCeEEEEEECCCCccHHHhhHHHHHHHHHCCC----------CeEEEEEecc
Confidence            3579999999999999999999999999887754          3788888876

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=98.56  E-value=2.6e-07  Score=81.99  Aligned_cols=43  Identities=26%  Similarity=0.381  Sum_probs=36.2

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD  277 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d  277 (428)
                      .++++|+.||.+|||+|..+.|.|.++.+++..          ++.+..+.+.
T Consensus        21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~----------~v~~~~~p~~   63 (195)
T 2znm_A           21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPS----------DAYLRTEHVV   63 (195)
T ss_dssp             SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCT----------TEEEEEEECC
T ss_pred             CCCcEEEEEECCCChhHHHHhHHHHHHHHHCCC----------ceEEEEeccc
Confidence            578999999999999999999999998888753          4777777763

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=98.56  E-value=1.8e-07  Score=71.10  Aligned_cols=66  Identities=15%  Similarity=0.301  Sum_probs=49.7

Q ss_pred             EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225          230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF  309 (428)
Q Consensus       230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  309 (428)
                      ++.|+++|||+|+...+.|.++..+++           ++.+..++++.+..                   ...++.+.+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~-----------~i~~~~vdi~~~~~-------------------~~~~l~~~~   52 (85)
T 1ego_A            3 TVIFGRSGCPYCVRAKDLAEKLSNERD-----------DFQYQYVDIRAEGI-------------------TKEDLQQKA   52 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHS-----------SCEEEEECHHHHTC-------------------CSHHHHHHT
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhcCC-----------CceEEEEecccChH-------------------HHHHHHHHh
Confidence            677999999999999999999887653           57788777753210                   014688888


Q ss_pred             C--cCccceEEEECCCCcEEe
Q 014225          310 D--VQGIPCLVIIGPEGKTVT  328 (428)
Q Consensus       310 ~--v~~~P~~~lid~~G~i~~  328 (428)
                      |  +.++|+++ +  +|+.+.
T Consensus        53 ~~~~~~vP~i~-~--~g~~i~   70 (85)
T 1ego_A           53 GKPVETVPQIF-V--DQQHIG   70 (85)
T ss_dssp             CCCSCCSCEEE-E--TTEEEE
T ss_pred             CCCCceeCeEE-E--CCEEEE
Confidence            8  99999985 4  577764

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=98.54  E-value=3e-07  Score=81.45  Aligned_cols=43  Identities=21%  Similarity=0.254  Sum_probs=36.0

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD  277 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d  277 (428)
                      .++++|+.||.+|||+|..+.|.|.++.+++.+          ++.+..+.+.
T Consensus        24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~----------~v~~~~~p~~   66 (192)
T 3h93_A           24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPA----------DVHFVRLPAL   66 (192)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCT----------TEEEEEEECC
T ss_pred             CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCC----------CeEEEEEehh
Confidence            578999999999999999999999988887754          3777766663

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=98.52  E-value=1.9e-07  Score=75.51  Aligned_cols=68  Identities=21%  Similarity=0.363  Sum_probs=46.2

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      ++++++ ||++|||+|+.+.|.|.++..              .+.++.|..+.+..+.                  ...+
T Consensus        19 ~~~vv~-f~a~~C~~C~~~~~~l~~~~~--------------~~~~v~v~~~~~~~~~------------------~~~l   65 (116)
T 2e7p_A           19 SAPVVV-FSKTYCGYCNRVKQLLTQVGA--------------SYKVVELDELSDGSQL------------------QSAL   65 (116)
T ss_dssp             SSSEEE-EECTTCHHHHHHHHHHHHHTC--------------CCEEEEGGGSTTHHHH------------------HHHH
T ss_pred             CCCEEE-EECCCChhHHHHHHHHHHcCC--------------CeEEEEccCCCChHHH------------------HHHH
Confidence            345555 999999999999998887532              2444444433321111                  2468


Q ss_pred             HHhcCcCccceEEEECCCCcEEec
Q 014225          306 TKYFDVQGIPCLVIIGPEGKTVTK  329 (428)
Q Consensus       306 ~~~~~v~~~P~~~lid~~G~i~~~  329 (428)
                      .+.|++.++|++ ++  +|+++..
T Consensus        66 ~~~~~v~~~Pt~-~~--~g~~v~~   86 (116)
T 2e7p_A           66 AHWTGRGTVPNV-FI--GGKQIGG   86 (116)
T ss_dssp             HHHHSCCSSCEE-EE--TTEEEEC
T ss_pred             HHHhCCCCcCEE-EE--CCEEECC
Confidence            889999999999 44  6888765

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=98.51  E-value=4.5e-07  Score=83.41  Aligned_cols=70  Identities=16%  Similarity=0.215  Sum_probs=55.5

Q ss_pred             CCcEEEEEEec--cCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcch
Q 014225          225 VGKTVGLYFSA--RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI  302 (428)
Q Consensus       225 ~gk~vll~F~a--~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~  302 (428)
                      .+++|+|.|||  |||+    +.|.|.++++.+++.        +++.|+.|++|...                  .+..
T Consensus        21 ~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~--------~~v~~akVDvd~~g------------------~~~~   70 (240)
T 2qc7_A           21 KSKFVLVKFDTQYPYGE----KQDEFKRLAENSASS--------DDLLVAEVGISDYG------------------DKLN   70 (240)
T ss_dssp             GCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTC--------TTEEEEEECCCCSS------------------SCCS
T ss_pred             CCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCC--------CCeEEEEEeCCccc------------------chhh
Confidence            35799999999  9998    999999999998642        36888888876300                  0013


Q ss_pred             hHHHHhcCcC--ccceEEEECCCCc
Q 014225          303 KELTKYFDVQ--GIPCLVIIGPEGK  325 (428)
Q Consensus       303 ~~~~~~~~v~--~~P~~~lid~~G~  325 (428)
                      .++++.|+|.  ++||++++ ++|+
T Consensus        71 ~~l~~~~~V~~~~~PTl~~f-~~G~   94 (240)
T 2qc7_A           71 MELSEKYKLDKESYPVFYLF-RDGD   94 (240)
T ss_dssp             HHHHHHTTCCGGGCSEEEEE-ETTC
T ss_pred             HHHHHHcCCCCCCCCEEEEE-eCCC
Confidence            7899999999  99999999 7776

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=98.50  E-value=1.1e-07  Score=79.28  Aligned_cols=63  Identities=13%  Similarity=0.177  Sum_probs=53.7

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+++|+|+|||+ |++|+...|.|.+++++|+++   +.++.|++|..                        ..+++.||
T Consensus        22 ~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk---~~f~~vd~d~~------------------------~~~a~~~g   73 (133)
T 2djk_A           22 AGIPLAYIFAET-AEERKELSDKLKPIAEAQRGV---INFGTIDAKAF------------------------GAHAGNLN   73 (133)
T ss_dssp             TTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTT---SEEEEECTTTT------------------------GGGTTTTT
T ss_pred             CCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCe---EEEEEEchHHh------------------------HHHHHHcC
Confidence            357899999999 899999999999999999775   77777766533                        55778899


Q ss_pred             CCC--CceEEEEc
Q 014225          140 IEG--IPCLVVLQ  150 (428)
Q Consensus       140 v~~--~P~~~lid  150 (428)
                      +.+  +|++++++
T Consensus        74 i~~~~iPtl~i~~   86 (133)
T 2djk_A           74 LKTDKFPAFAIQE   86 (133)
T ss_dssp             CCSSSSSEEEEEC
T ss_pred             CCcccCCEEEEEe
Confidence            999  99999998

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=98.49  E-value=1.7e-06  Score=78.83  Aligned_cols=194  Identities=10%  Similarity=0.104  Sum_probs=114.1

Q ss_pred             CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225           61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI  140 (428)
Q Consensus        61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v  140 (428)
                      .++++|-|+++||   ....+.+.++++.+. .   +.+... .                      +    ..+++.|++
T Consensus        27 ~~v~vVgff~~~~---~~~~~~f~~~A~~l~-~---~~F~~t-~----------------------~----~~v~~~~~v   72 (227)
T 4f9z_D           27 TEVAVIGFFQDLE---IPAVPILHSMVQKFP-G---VSFGIS-T----------------------D----SEVLTHYNI   72 (227)
T ss_dssp             SSEEEEEECSCSC---STHHHHHHHHTTTCT-T---SEEEEE-C----------------------C----HHHHHHTTC
T ss_pred             CCeEEEEEecCCC---chhHHHHHHHHHhCC-C---ceEEEE-C----------------------C----HHHHHHcCC
Confidence            5799999999996   677888888888873 2   444432 1                      1    577888999


Q ss_pred             CCCceEEEEcCCCCCCC-cccccchhhhhhcccCccccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCcccCCCCCcee
Q 014225          141 EGIPCLVVLQPYDDKDD-ATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLLGHPPDEKV  219 (428)
Q Consensus       141 ~~~P~~~lid~~~~dG~-i~~~~~~~~i~~~g~~~~p~t~~~~~~l~~~~~~~~~~~~~~~~~g~~~p~f~l~~~g~~~v  219 (428)
                      .. |+++++.+   ... ....++..    .+    +.+..   .+......            ...|-+. ..+.. . 
T Consensus        73 ~~-p~i~lfk~---~~~~~~~~~~~~----~g----~~~~~---~l~~fi~~------------~~~plv~-e~t~~-n-  122 (227)
T 4f9z_D           73 TG-NTICLFRL---VDNEQLNLEDED----IE----SIDAT---KLSRFIEI------------NSLHMVT-EYNPV-T-  122 (227)
T ss_dssp             CS-SEEEEEET---TTTEEEEECHHH----HH----TCCHH---HHHHHHHH------------HCCCSEE-ECCHH-H-
T ss_pred             CC-CeEEEEEe---cCcccccccccc----cC----CCCHH---HHHHHHHH------------hCCCcee-ecCcc-c-
Confidence            87 99998886   221 11110000    00    11111   22221111            1122222 11111 1 


Q ss_pred             cccc-c-CC-cEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccc
Q 014225          220 PVSS-L-VG-KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALP  296 (428)
Q Consensus       220 ~l~~-~-~g-k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~  296 (428)
                       ... + .+ +.+++.|..+||+.|....+.+.+++++|+++          +.++.|..+...                
T Consensus       123 -~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~~----------i~F~~vd~~~~~----------------  175 (227)
T 4f9z_D          123 -VIGLFNSVIQIHLLLIMNKASPEYEENMHRYQKAAKLFQGK----------ILFILVDSGMKE----------------  175 (227)
T ss_dssp             -HHHHHHSSCCEEEEEEECTTSTTHHHHHHHHHHHHHHTTTT----------CEEEEEETTSGG----------------
T ss_pred             -HHHHhccCCceEEEEEEcCCcchHHHHHHHHHHHHHHhhCC----------EEEEEeCCccHh----------------
Confidence             011 1 23 34556677889999999999999999999865          778888776321                


Q ss_pred             cCCcchhHHHHhcCcC--ccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhc
Q 014225          297 FGDPTIKELTKYFDVQ--GIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKN  363 (428)
Q Consensus       297 ~~~d~~~~~~~~~~v~--~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~  363 (428)
                           ...+.+.||+.  .+|++.+++..+...+..-.      +    .++.   +.|.+.++..+.+
T Consensus       176 -----~~~~l~~fgl~~~~~P~~~i~~~~~~~ky~~~~------~----~~t~---~~i~~Fv~~~~~G  226 (227)
T 4f9z_D          176 -----NGKVISFFKLKESQLPALAIYQTLDDEWDTLPT------A----EVSV---EHVQNFCDGFLSG  226 (227)
T ss_dssp             -----GHHHHHHTTCCGGGCSEEEEEESSSCCEEEETT------C----CCCH---HHHHHHHHHHHTT
T ss_pred             -----HHHHHHHcCCCcccCCEEEEEECCCCccccCCc------C----CCCH---HHHHHHHHHHhCC
Confidence                 24567889998  89999999865543222100      0    2343   5567777766654

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=98.46  E-value=1.7e-07  Score=74.87  Aligned_cols=63  Identities=16%  Similarity=0.297  Sum_probs=50.4

Q ss_pred             EEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCC
Q 014225           63 VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEG  142 (428)
Q Consensus        63 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~  142 (428)
                      .+++.||++||++|+...|.|.++.+++   +  +.+..|++|.+                        ..+++.|++. 
T Consensus        30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~---~--i~~~~vDId~d------------------------~~l~~~ygv~-   79 (107)
T 2fgx_A           30 RKLVVYGREGCHLCEEMIASLRVLQKKS---W--FELEVINIDGN------------------------EHLTRLYNDR-   79 (107)
T ss_dssp             CCEEEEECSSCHHHHHHHHHHHHHHHHS---C--CCCEEEETTTC------------------------HHHHHHSTTS-
T ss_pred             cEEEEEeCCCChhHHHHHHHHHHHHHhc---C--CeEEEEECCCC------------------------HHHHHHhCCC-
Confidence            6789999999999999999999998875   3  55666666654                        4567779987 


Q ss_pred             CceEEEEcCCCCCCCcc
Q 014225          143 IPCLVVLQPYDDKDDAT  159 (428)
Q Consensus       143 ~P~~~lid~~~~dG~i~  159 (428)
                      +|+++++.    +|+.+
T Consensus        80 VP~l~~~~----dG~~v   92 (107)
T 2fgx_A           80 VPVLFAVN----EDKEL   92 (107)
T ss_dssp             CSEEEETT----TTEEE
T ss_pred             CceEEEEE----CCEEE
Confidence            99988776    67655

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=98.46  E-value=3.3e-07  Score=72.40  Aligned_cols=63  Identities=16%  Similarity=0.204  Sum_probs=47.4

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      .+++++.|+++|||+|+...+.|.++.+              ++.+..|++|...                     ..++
T Consensus        15 ~~~~v~~f~~~~C~~C~~~~~~L~~l~~--------------~i~~~~vdi~~~~---------------------~~el   59 (100)
T 1wjk_A           15 ALPVLTLFTKAPCPLCDEAKEVLQPYKD--------------RFILQEVDITLPE---------------------NSTW   59 (100)
T ss_dssp             CCCEEEEEECSSCHHHHHHHHHTSTTSS--------------SSEEEEEETTSST---------------------THHH
T ss_pred             CCCEEEEEeCCCCcchHHHHHHHHHhhh--------------CCeEEEEECCCcc---------------------hHHH
Confidence            4568888999999999999998876432              3678888887221                     2678


Q ss_pred             HHhcCcCccceEEEECCCCcEE
Q 014225          306 TKYFDVQGIPCLVIIGPEGKTV  327 (428)
Q Consensus       306 ~~~~~v~~~P~~~lid~~G~i~  327 (428)
                      .+.|| .++|+++ +  +|+.+
T Consensus        60 ~~~~g-~~vP~l~-~--~g~~~   77 (100)
T 1wjk_A           60 YERYK-FDIPVFH-L--NGQFL   77 (100)
T ss_dssp             HHHSS-SSCSEEE-E--SSSEE
T ss_pred             HHHHC-CCCCEEE-E--CCEEE
Confidence            88999 9999764 4  57664

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=98.45  E-value=5.2e-07  Score=81.71  Aligned_cols=86  Identities=17%  Similarity=0.236  Sum_probs=55.6

Q ss_pred             cccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCC----Ch---------------HHHHHHHh
Q 014225           56 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE----DL---------------NAFNNYRA  116 (428)
Q Consensus        56 l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~----~~---------------~~~~~~~~  116 (428)
                      +....||++++.||++|||+|+++.|.|+++.+.    +  +.++.+....    ..               ..+.+++.
T Consensus        81 ~g~~~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~----~--v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~  154 (216)
T 1eej_A           81 YKAPQEKHVITVFTDITCGYCHKLHEQMADYNAL----G--ITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMA  154 (216)
T ss_dssp             ECCTTCCEEEEEEECTTCHHHHHHHTTHHHHHHT----T--EEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHT
T ss_pred             ecCCCCCEEEEEEECCCCHHHHHHHHHHHHHHhC----C--cEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHh
Confidence            3344688999999999999999999999887642    3  7777665421    11               12222222


Q ss_pred             cCCCc--eeccCChHHHHHHHhhcCCCCCceEEE
Q 014225          117 CMPWL--AVPYSDLETKKALNRKFDIEGIPCLVV  148 (428)
Q Consensus       117 ~~~~~--~~~~~d~~~~~~l~~~~~v~~~P~~~l  148 (428)
                      ..+..  ... ...+....+++.||+.++|++++
T Consensus       155 ~~~~~~~~~~-~~v~~~~~l~~~~gV~gtPt~v~  187 (216)
T 1eej_A          155 GKSVAPASCD-VDIADHYALGVQLGVSGTPAVVL  187 (216)
T ss_dssp             TCCCCCCCCS-CCHHHHHHHHHHHTCCSSSEEEC
T ss_pred             CCCCChhHHH-HHHHHHHHHHHHcCCCccCEEEE
Confidence            22211  111 13344478999999999999854

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=98.43  E-value=2.5e-07  Score=74.74  Aligned_cols=63  Identities=19%  Similarity=0.273  Sum_probs=42.3

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      +++.|++ ||++||++|+...|.|+++..+       +.++  .+|.+..                 .......+.+.|+
T Consensus        18 ~~~~vv~-f~a~~C~~C~~~~~~l~~~~~~-------~~~v--~v~~~~~-----------------~~~~~~~l~~~~~   70 (116)
T 2e7p_A           18 SSAPVVV-FSKTYCGYCNRVKQLLTQVGAS-------YKVV--ELDELSD-----------------GSQLQSALAHWTG   70 (116)
T ss_dssp             TSSSEEE-EECTTCHHHHHHHHHHHHHTCC-------CEEE--EGGGSTT-----------------HHHHHHHHHHHHS
T ss_pred             cCCCEEE-EECCCChhHHHHHHHHHHcCCC-------eEEE--EccCCCC-----------------hHHHHHHHHHHhC
Confidence            3556666 9999999999999988876322       4444  4443321                 0111257888999


Q ss_pred             CCCCceEEEEc
Q 014225          140 IEGIPCLVVLQ  150 (428)
Q Consensus       140 v~~~P~~~lid  150 (428)
                      +.++|++ +++
T Consensus        71 v~~~Pt~-~~~   80 (116)
T 2e7p_A           71 RGTVPNV-FIG   80 (116)
T ss_dssp             CCSSCEE-EET
T ss_pred             CCCcCEE-EEC
Confidence            9999998 443

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=98.41  E-value=7.1e-07  Score=77.70  Aligned_cols=50  Identities=18%  Similarity=0.232  Sum_probs=40.0

Q ss_pred             CCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEe
Q 014225           50 HGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS  103 (428)
Q Consensus        50 ~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs  103 (428)
                      ++..+.+....+|++++.||.+|||+|+.+.|.|.++.+++++    +.++.+.
T Consensus        11 ~~~~~~~G~~~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~----v~~~~~~   60 (175)
T 3gyk_A           11 DPNAPVLGNPEGDVTVVEFFDYNCPYCRRAMAEVQGLVDADPN----VRLVYRE   60 (175)
T ss_dssp             CTTSCEEECTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT----EEEEEEE
T ss_pred             CCCCCCcCCCCCCEEEEEEECCCCccHHHHHHHHHHHHHhCCC----EEEEEEe
Confidence            3445667777899999999999999999999999999988643    5555544

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=98.40  E-value=2e-07  Score=71.68  Aligned_cols=57  Identities=18%  Similarity=0.255  Sum_probs=42.5

Q ss_pred             EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCc
Q 014225           65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP  144 (428)
Q Consensus        65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P  144 (428)
                      ++.||++||++|+...|.|.++..++        +..|++|.+                        ..+++.|+++ +|
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~--------~~~vdid~~------------------------~~l~~~~g~~-vP   49 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA--------FFSVFIDDD------------------------AALESAYGLR-VP   49 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC--------EEEEECTTC------------------------HHHHHHHTTT-CS
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh--------eEEEECCCC------------------------HHHHHHhCCC-cC
Confidence            78899999999999999887653321        344555544                        5677789998 99


Q ss_pred             eEEEEcCCCCCCCcc
Q 014225          145 CLVVLQPYDDKDDAT  159 (428)
Q Consensus       145 ~~~lid~~~~dG~i~  159 (428)
                      ++++  .   +|+.+
T Consensus        50 tl~~--~---~G~~v   59 (87)
T 1ttz_A           50 VLRD--P---MGREL   59 (87)
T ss_dssp             EEEC--T---TCCEE
T ss_pred             eEEE--E---CCEEE
Confidence            9887  4   78765

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.38  E-value=8.9e-07  Score=91.01  Aligned_cols=69  Identities=13%  Similarity=0.157  Sum_probs=58.7

Q ss_pred             cCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchh
Q 014225          224 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK  303 (428)
Q Consensus       224 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~  303 (428)
                      ..++..++.||++|||+|+.+.|.|+++...+.           ++.+..|+++..                       .
T Consensus       115 ~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~-----------~v~~~~vd~~~~-----------------------~  160 (521)
T 1hyu_A          115 IDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP-----------RIKHTAIDGGTF-----------------------Q  160 (521)
T ss_dssp             CCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT-----------TEEEEEEETTTC-----------------------H
T ss_pred             cCCCcceEEEECCCCcCcHHHHHHHHHHHhHcC-----------ceEEEEEechhh-----------------------H
Confidence            446788999999999999999999999887754           478888888755                       6


Q ss_pred             HHHHhcCcCccceEEEECCCCcEEec
Q 014225          304 ELTKYFDVQGIPCLVIIGPEGKTVTK  329 (428)
Q Consensus       304 ~~~~~~~v~~~P~~~lid~~G~i~~~  329 (428)
                      +++..|+|.++|++++   +|+.+..
T Consensus       161 ~~~~~~~i~svPt~~i---~g~~~~~  183 (521)
T 1hyu_A          161 NEITERNVMGVPAVFV---NGKEFGQ  183 (521)
T ss_dssp             HHHHHTTCCSSSEEEE---TTEEEEE
T ss_pred             HHHHHhCCCccCEEEE---CCEEEec
Confidence            7999999999999977   8888765

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=98.35  E-value=2.1e-06  Score=79.08  Aligned_cols=97  Identities=8%  Similarity=0.067  Sum_probs=60.7

Q ss_pred             eecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC---CCHH-HHH---------
Q 014225          218 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD---RDQT-SFE---------  284 (428)
Q Consensus       218 ~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d---~~~~-~~~---------  284 (428)
                      .+.+....++++|+.|+.+|||+|+++.+.+.++.+.   .         ++.|+.+.+.   .... ...         
T Consensus        89 ~i~~G~~~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~---g---------~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~  156 (241)
T 1v58_A           89 WLLDGKKDAPVIVYVFADPFCPYCKQFWQQARPWVDS---G---------KVQLRTLLVGVIKPESPATAAAILASKDPA  156 (241)
T ss_dssp             CEEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHT---T---------SEEEEEEECCCSSTTHHHHHHHHHHSSSHH
T ss_pred             CceECCCCCCeEEEEEECCCChhHHHHHHHHHHHHhC---C---------cEEEEEEECCcCCCcHHHHHHHHHHccCHH
Confidence            3445555678999999999999999999998876553   1         4777766652   1111 111         


Q ss_pred             HHH---h-cCC--ccc--------cccCCcchhHHHHhcCcCccceEEEECCCCcE
Q 014225          285 SYF---G-TMP--WLA--------LPFGDPTIKELTKYFDVQGIPCLVIIGPEGKT  326 (428)
Q Consensus       285 ~~~---~-~~~--~~~--------~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i  326 (428)
                      +++   . .+.  .+.        .....+....+++.+||+++|++++.|.+|++
T Consensus       157 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~  212 (241)
T 1v58_A          157 KTWQQYEASGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL  212 (241)
T ss_dssp             HHHHHHHHTTTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE
T ss_pred             HHHHHHHHHhccCCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE
Confidence            111   1 000  000        00011234567889999999999999888975

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=98.35  E-value=2.1e-07  Score=70.16  Aligned_cols=58  Identities=19%  Similarity=0.271  Sum_probs=42.7

Q ss_pred             EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCc
Q 014225           65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP  144 (428)
Q Consensus        65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P  144 (428)
                      ++.||++||++|+...|.|+++.+++   +  +.+..+.+|.+.+                 +    ..+.+.||+.++|
T Consensus         4 ~~~f~~~~C~~C~~~~~~l~~~~~~~---~--~~~~~~~v~~~~~-----------------~----~~~~~~~gv~~vP   57 (80)
T 2k8s_A            4 KAIFYHAGCPVCVSAEQAVANAIDPS---K--YTVEIVHLGTDKA-----------------R----IAEAEKAGVKSVP   57 (80)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHSCTT---T--EEEEEEETTTCSS-----------------T----HHHHHHHTCCEEE
T ss_pred             eEEEeCCCCCchHHHHHHHHHHHHhc---C--CeEEEEEecCChh-----------------h----HHHHHHcCCCcCC
Confidence            67799999999999999998876553   3  4555555554311                 1    4566889999999


Q ss_pred             eEEE
Q 014225          145 CLVV  148 (428)
Q Consensus       145 ~~~l  148 (428)
                      ++++
T Consensus        58 t~~i   61 (80)
T 2k8s_A           58 ALVI   61 (80)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9776

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=98.34  E-value=2.6e-06  Score=75.24  Aligned_cols=42  Identities=21%  Similarity=0.281  Sum_probs=35.3

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEc
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST  276 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~  276 (428)
                      .++++|+.||.++||+|..+.+.+.++.+++..          ++.+..+.+
T Consensus        24 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~----------~v~~~~~p~   65 (193)
T 2rem_A           24 AGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAK----------DVRFTLVPA   65 (193)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTSCT----------TEEEEEEEC
T ss_pred             CCCeEEEEEECCCChhHhhhhHHHHHHHHhcCC----------ceEEEEeCc
Confidence            578899999999999999999999988877653          477777765

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=98.31  E-value=1.4e-06  Score=77.21  Aligned_cols=44  Identities=20%  Similarity=0.243  Sum_probs=38.6

Q ss_pred             CCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecC
Q 014225           59 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD  105 (428)
Q Consensus        59 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D  105 (428)
                      -.++++++.||++|||+|+.+.|.+.++.+++.++   +.+..+.++
T Consensus        23 ~~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~~---v~~~~~~~~   66 (195)
T 3hd5_A           23 TPGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQD---VVLKQVPIA   66 (195)
T ss_dssp             STTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCTT---EEEEEEECC
T ss_pred             CCCCeEEEEEECCCCccHHHhhHHHHHHHHHCCCC---eEEEEEecc
Confidence            35899999999999999999999999999988763   888888775

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=98.31  E-value=1.1e-06  Score=81.09  Aligned_cols=68  Identities=10%  Similarity=0.187  Sum_probs=53.0

Q ss_pred             CCCEEEEEEe--cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhh
Q 014225           60 EGKVTALYFS--ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK  137 (428)
Q Consensus        60 ~gk~vlv~F~--a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~  137 (428)
                      .+++|+|+||  |+||+    +.|.+.++++.+++...++.++.|++|...+                 ..  ...+++.
T Consensus        32 ~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~-----------------~~--n~~la~~   88 (248)
T 2c0g_A           32 RFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGE-----------------LE--NKALGDR   88 (248)
T ss_dssp             TSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTT-----------------CT--THHHHHH
T ss_pred             cCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccc-----------------cc--cHHHHHH
Confidence            4679999999  99998    8999999999997611248888887765100                 00  1789999


Q ss_pred             cCCC--CCceEEEEc
Q 014225          138 FDIE--GIPCLVVLQ  150 (428)
Q Consensus       138 ~~v~--~~P~~~lid  150 (428)
                      |+|.  ++||++++.
T Consensus        89 ~~V~~~~~PTl~~F~  103 (248)
T 2c0g_A           89 YKVDDKNFPSIFLFK  103 (248)
T ss_dssp             TTCCTTSCCEEEEES
T ss_pred             hCCCcCCCCeEEEEe
Confidence            9999  999999986

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=98.29  E-value=1.8e-07  Score=88.18  Aligned_cols=72  Identities=15%  Similarity=0.367  Sum_probs=50.6

Q ss_pred             eecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCcccccc
Q 014225          218 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF  297 (428)
Q Consensus       218 ~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~  297 (428)
                      .+.+.+..++..+++|||+|||+|+++.|.++++.+++              .  .|.+|...                 
T Consensus       189 ~~~la~~l~~~~vV~F~A~WC~~Ck~l~p~le~lA~~l--------------~--~Vd~d~~d-----------------  235 (291)
T 3kp9_A          189 AVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQV--------------P--YVECSPNG-----------------  235 (291)
T ss_dssp             HHHHHHHHHHTTCEEEECTTCHHHHHHHHHHGGGGGGS--------------C--EEESCSSC-----------------
T ss_pred             HHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHc--------------C--EEEEeecC-----------------
Confidence            55555555555679999999999999999999876432              2  34444210                 


Q ss_pred             CC-cchhHHHHhcCcCccceEEEECCCCcE
Q 014225          298 GD-PTIKELTKYFDVQGIPCLVIIGPEGKT  326 (428)
Q Consensus       298 ~~-d~~~~~~~~~~v~~~P~~~lid~~G~i  326 (428)
                       . +...+++++|+|+++||+++   +|+.
T Consensus       236 -~~~~~~~la~~~gI~~vPT~~i---~G~~  261 (291)
T 3kp9_A          236 -PGTPQAQECTEAGITSYPTWII---NGRT  261 (291)
T ss_dssp             -SSSCCCHHHHTTTCCSTTEEEE---TTEE
T ss_pred             -chhhHHHHHHHcCCcccCeEEE---CCEE
Confidence             0 11378999999999999655   7764

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=98.27  E-value=3.1e-06  Score=76.32  Aligned_cols=85  Identities=21%  Similarity=0.196  Sum_probs=53.7

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC----CH---------------HHHHH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR----DQ---------------TSFES  285 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~----~~---------------~~~~~  285 (428)
                      .++++++.||.+|||+|+++.|.|.++.+    .         ++.|+.+...-    +.               ..+..
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~----~---------~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~  151 (211)
T 1t3b_A           85 NEKHVVTVFMDITCHYCHLLHQQLKEYND----L---------GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNE  151 (211)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHH----T---------TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHH
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHh----C---------CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHH
Confidence            57899999999999999999999887543    2         36666554421    10               11222


Q ss_pred             HHhcCCccc---cccCCcchhHHHHhcCcCccceEEEECCCCc
Q 014225          286 YFGTMPWLA---LPFGDPTIKELTKYFDVQGIPCLVIIGPEGK  325 (428)
Q Consensus       286 ~~~~~~~~~---~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~  325 (428)
                      ++.... +.   .....+.+..+++.+||+++||+++  .||+
T Consensus       152 ~~~~~~-~~~~~~~~~v~~~~~l~~~~gV~gTPt~vi--~nG~  191 (211)
T 1t3b_A          152 AEKGNL-PKEVKTPNIVKKHYELGIQFGVRGTPSIVT--STGE  191 (211)
T ss_dssp             HHTTCC-CSSCCCSSHHHHHHHHHHHHTCCSSCEEEC--TTSC
T ss_pred             HHcCCC-CChHHHHHHHHHHHHHHHHcCCCcCCEEEE--eCCE
Confidence            222111 10   0111234567889999999999987  5676

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=98.21  E-value=1.4e-06  Score=66.02  Aligned_cols=61  Identities=16%  Similarity=0.280  Sum_probs=45.9

Q ss_pred             EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC--CCC
Q 014225           65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD--IEG  142 (428)
Q Consensus        65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~--v~~  142 (428)
                      ++.|+++|||+|+...+.|+++..+++  +  +.+..++++.+..                 ..   ..+.+.++  +.+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~--~--i~~~~vdi~~~~~-----------------~~---~~l~~~~~~~~~~   58 (85)
T 1ego_A            3 TVIFGRSGCPYCVRAKDLAEKLSNERD--D--FQYQYVDIRAEGI-----------------TK---EDLQQKAGKPVET   58 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHS--S--CEEEEECHHHHTC-----------------CS---HHHHHHTCCCSCC
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhcCC--C--ceEEEEecccChH-----------------HH---HHHHHHhCCCCce
Confidence            678999999999999999999888764  3  7777776654321                 11   46788888  899


Q ss_pred             CceEEEEc
Q 014225          143 IPCLVVLQ  150 (428)
Q Consensus       143 ~P~~~lid  150 (428)
                      +|++ +++
T Consensus        59 vP~i-~~~   65 (85)
T 1ego_A           59 VPQI-FVD   65 (85)
T ss_dssp             SCEE-EET
T ss_pred             eCeE-EEC
Confidence            9997 344

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=98.19  E-value=2.2e-06  Score=76.45  Aligned_cols=45  Identities=18%  Similarity=0.292  Sum_probs=37.5

Q ss_pred             cCCcEEEEEEeccCChhHHhhhHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEEcCC
Q 014225          224 LVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDR  278 (428)
Q Consensus       224 ~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~iv~is~d~  278 (428)
                      ..++++||.||+.|||+|..+.|.|   .++.+++.+          ++.+..+.++.
T Consensus       111 ~~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~----------~v~~~~~~v~~  158 (197)
T 1un2_A          111 VAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPE----------GVKMTKYHVNF  158 (197)
T ss_dssp             CTTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCT----------TCCEEEEECSS
T ss_pred             CCCCCEEEEEECCCChhHHHhCcccccHHHHHHHCCC----------CCEEEEeccCc
Confidence            3468999999999999999999998   887777754          47888888864

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=98.17  E-value=1.1e-05  Score=70.09  Aligned_cols=52  Identities=12%  Similarity=0.158  Sum_probs=42.0

Q ss_pred             eecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC
Q 014225          218 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD  277 (428)
Q Consensus       218 ~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d  277 (428)
                      .+.+....++++|+.|+..+||+|..+.+.+.++.++|.+.        .++.++...+.
T Consensus        19 ~~~~G~~~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~--------~~v~~~~~~~~   70 (175)
T 1z6m_A           19 GLHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKS--------GKVERIIKLFD   70 (175)
T ss_dssp             SEEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHT--------TSEEEEEEECC
T ss_pred             CcccCCCCCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhC--------CcEEEEEEeCC
Confidence            45666677899999999999999999999999998888432        25888887664

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=98.17  E-value=7.3e-06  Score=72.70  Aligned_cols=43  Identities=23%  Similarity=0.302  Sum_probs=36.3

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD  277 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d  277 (428)
                      .++++|+.||..|||+|..+.|.+.++.+++.+          ++.+..+.++
T Consensus        23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~----------~v~~~~~p~~   65 (193)
T 3hz8_A           23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKD----------DMYLRTEHVV   65 (193)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCT----------TEEEEEEECC
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCC----------CeEEEEecCC
Confidence            478999999999999999999999988877654          3777777775

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=98.16  E-value=4.6e-06  Score=76.60  Aligned_cols=67  Identities=18%  Similarity=0.314  Sum_probs=54.9

Q ss_pred             CCCEEEEEEec--CCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCC---ChHHHHHHHhcCCCceeccCChHHHHHH
Q 014225           60 EGKVTALYFSA--NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE---DLNAFNNYRACMPWLAVPYSDLETKKAL  134 (428)
Q Consensus        60 ~gk~vlv~F~a--~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~---~~~~~~~~~~~~~~~~~~~~d~~~~~~l  134 (428)
                      .+++|+|.|||  +||+    +.|.+.++++.+++. .++.++.|++|.   +..                      ..+
T Consensus        21 ~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~-~~v~~akVDvd~~g~~~~----------------------~~l   73 (240)
T 2qc7_A           21 KSKFVLVKFDTQYPYGE----KQDEFKRLAENSASS-DDLLVAEVGISDYGDKLN----------------------MEL   73 (240)
T ss_dssp             GCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTC-TTEEEEEECCCCSSSCCS----------------------HHH
T ss_pred             CCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCC-CCeEEEEEeCCcccchhh----------------------HHH
Confidence            35799999999  9998    899999999999753 248888877653   211                      789


Q ss_pred             HhhcCCC--CCceEEEEcCCCCCCC
Q 014225          135 NRKFDIE--GIPCLVVLQPYDDKDD  157 (428)
Q Consensus       135 ~~~~~v~--~~P~~~lid~~~~dG~  157 (428)
                      ++.|+|.  ++||++++.    +|.
T Consensus        74 ~~~~~V~~~~~PTl~~f~----~G~   94 (240)
T 2qc7_A           74 SEKYKLDKESYPVFYLFR----DGD   94 (240)
T ss_dssp             HHHTTCCGGGCSEEEEEE----TTC
T ss_pred             HHHcCCCCCCCCEEEEEe----CCC
Confidence            9999999  999999997    575

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=98.10  E-value=1.8e-06  Score=68.06  Aligned_cols=56  Identities=18%  Similarity=0.194  Sum_probs=42.2

Q ss_pred             CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225           61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI  140 (428)
Q Consensus        61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v  140 (428)
                      .+++++.|+++||++|+...|.|.++.+     +  +.+..|++|....                      ..+.+.|+ 
T Consensus        15 ~~~~v~~f~~~~C~~C~~~~~~L~~l~~-----~--i~~~~vdi~~~~~----------------------~el~~~~g-   64 (100)
T 1wjk_A           15 ALPVLTLFTKAPCPLCDEAKEVLQPYKD-----R--FILQEVDITLPEN----------------------STWYERYK-   64 (100)
T ss_dssp             CCCEEEEEECSSCHHHHHHHHHTSTTSS-----S--SEEEEEETTSSTT----------------------HHHHHHSS-
T ss_pred             CCCEEEEEeCCCCcchHHHHHHHHHhhh-----C--CeEEEEECCCcch----------------------HHHHHHHC-
Confidence            4578899999999999998888875432     2  6677777762211                      67788999 


Q ss_pred             CCCceE
Q 014225          141 EGIPCL  146 (428)
Q Consensus       141 ~~~P~~  146 (428)
                      .++|++
T Consensus        65 ~~vP~l   70 (100)
T 1wjk_A           65 FDIPVF   70 (100)
T ss_dssp             SSCSEE
T ss_pred             CCCCEE
Confidence            999975

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=98.10  E-value=8.1e-06  Score=73.52  Aligned_cols=83  Identities=16%  Similarity=0.135  Sum_probs=51.2

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCC---Ch----------------HHHHHHHhcCCC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE---DL----------------NAFNNYRACMPW  120 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~---~~----------------~~~~~~~~~~~~  120 (428)
                      .+|++++.||.+|||+|+++.|.|+++.+    .+  +.+..+....   ..                ..+.+++...+.
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~----~~--v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~  158 (211)
T 1t3b_A           85 NEKHVVTVFMDITCHYCHLLHQQLKEYND----LG--ITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLP  158 (211)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHH----TT--EEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCC
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHh----CC--cEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCC
Confidence            46899999999999999999999988543    24  6666554321   11                111111111110


Q ss_pred             c-eeccCChHHHHHHHhhcCCCCCceEEE
Q 014225          121 L-AVPYSDLETKKALNRKFDIEGIPCLVV  148 (428)
Q Consensus       121 ~-~~~~~d~~~~~~l~~~~~v~~~P~~~l  148 (428)
                      . .-.-...+....+++.+|++++|++++
T Consensus       159 ~~~~~~~~v~~~~~l~~~~gV~gTPt~vi  187 (211)
T 1t3b_A          159 KEVKTPNIVKKHYELGIQFGVRGTPSIVT  187 (211)
T ss_dssp             SSCCCSSHHHHHHHHHHHHTCCSSCEEEC
T ss_pred             ChHHHHHHHHHHHHHHHHcCCCcCCEEEE
Confidence            0 000112234478899999999999887

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=98.09  E-value=1.6e-05  Score=70.23  Aligned_cols=43  Identities=21%  Similarity=0.243  Sum_probs=37.0

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD  105 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D  105 (428)
                      .++++++.||..|||+|+.+.|.|.++.+++.++   +.+..+.+.
T Consensus        24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~---v~~~~~p~~   66 (192)
T 3h93_A           24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPAD---VHFVRLPAL   66 (192)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCTT---EEEEEEECC
T ss_pred             CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCCC---eEEEEEehh
Confidence            5899999999999999999999999999988763   777766653

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=98.05  E-value=8.6e-06  Score=72.05  Aligned_cols=42  Identities=19%  Similarity=0.298  Sum_probs=36.6

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEec
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS  104 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~  104 (428)
                      .++++++.||.+|||+|..+.|.|.++.++++.+   +.+..+.+
T Consensus        21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~---v~~~~~p~   62 (195)
T 2znm_A           21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSD---AYLRTEHV   62 (195)
T ss_dssp             SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCTT---EEEEEEEC
T ss_pred             CCCcEEEEEECCCChhHHHHhHHHHHHHHHCCCc---eEEEEecc
Confidence            5789999999999999999999999999988653   77777765

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.01  E-value=9.3e-06  Score=83.36  Aligned_cols=74  Identities=12%  Similarity=0.116  Sum_probs=58.0

Q ss_pred             ccCCCCEEeccc--------CCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcC
Q 014225           47 LNQHGTQVKVSD--------LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACM  118 (428)
Q Consensus        47 ~~~~G~~v~l~~--------~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~  118 (428)
                      ....|.+..+++        ..+++.++.||++||++|+...|.++++..++.    ++.+..|+.|..           
T Consensus        95 ~~~~~~~~~~~~~~~~~i~~~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~----~v~~~~vd~~~~-----------  159 (521)
T 1hyu_A           95 LWTGGHPSKEAQSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP----RIKHTAIDGGTF-----------  159 (521)
T ss_dssp             HHHTTCCCCSCHHHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT----TEEEEEEETTTC-----------
T ss_pred             HhhcCCCCCCCHHHHHHHHhcCCCcceEEEECCCCcCcHHHHHHHHHHHhHcC----ceEEEEEechhh-----------
Confidence            344666554442        346789999999999999999999999988864    277777765533           


Q ss_pred             CCceeccCChHHHHHHHhhcCCCCCceEEE
Q 014225          119 PWLAVPYSDLETKKALNRKFDIEGIPCLVV  148 (428)
Q Consensus       119 ~~~~~~~~d~~~~~~l~~~~~v~~~P~~~l  148 (428)
                                   ..+++.|++.++|++++
T Consensus       160 -------------~~~~~~~~i~svPt~~i  176 (521)
T 1hyu_A          160 -------------QNEITERNVMGVPAVFV  176 (521)
T ss_dssp             -------------HHHHHHTTCCSSSEEEE
T ss_pred             -------------HHHHHHhCCCccCEEEE
Confidence                         78899999999999877

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=97.97  E-value=4.3e-05  Score=70.20  Aligned_cols=97  Identities=9%  Similarity=0.085  Sum_probs=59.5

Q ss_pred             EecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecC---CC-------------hHHHHHHHh-
Q 014225           54 VKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD---ED-------------LNAFNNYRA-  116 (428)
Q Consensus        54 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D---~~-------------~~~~~~~~~-  116 (428)
                      +.+..-.+|++++.|+.+|||+|+++.|.+.++.+.    + ++.+..+.+.   ..             ...+.++.. 
T Consensus        90 i~~G~~~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~----g-~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~  164 (241)
T 1v58_A           90 LLDGKKDAPVIVYVFADPFCPYCKQFWQQARPWVDS----G-KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEA  164 (241)
T ss_dssp             EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHT----T-SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHH
T ss_pred             ceECCCCCCeEEEEEECCCChhHHHHHHHHHHHHhC----C-cEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHH
Confidence            334444678999999999999999999999887664    2 3777666542   11             111111111 


Q ss_pred             cCC---Ccee---c---cCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCc
Q 014225          117 CMP---WLAV---P---YSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDA  158 (428)
Q Consensus       117 ~~~---~~~~---~---~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i  158 (428)
                      .+.   ....   +   ....+....+.+.+|+.++|++++.+.   +|++
T Consensus       165 ~~~~~~l~~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~---~G~~  212 (241)
T 1v58_A          165 SGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSK---ENTL  212 (241)
T ss_dssp             TTTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEET---TTEE
T ss_pred             HhccCCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECC---CCCE
Confidence            111   0000   0   001123367788999999999999987   7853

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=97.90  E-value=3.6e-05  Score=57.55  Aligned_cols=59  Identities=12%  Similarity=0.271  Sum_probs=40.9

Q ss_pred             EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225          230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF  309 (428)
Q Consensus       230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  309 (428)
                      ++.|+++|||+|++..+.|.+       .         ++.+..++++.+.+.                    .+..+.+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~-------~---------~i~~~~vdi~~~~~~--------------------~~~~~~~   46 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMEN-------R---------GFDFEMINVDRVPEA--------------------AEALRAQ   46 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH-------T---------TCCCEEEETTTCHHH--------------------HHHHHHT
T ss_pred             EEEEcCCCChhHHHHHHHHHH-------C---------CCCeEEEECCCCHHH--------------------HHHHHHh
Confidence            567999999999998888764       2         356677888765321                    1222358


Q ss_pred             CcCccceEEEECCCCcEE
Q 014225          310 DVQGIPCLVIIGPEGKTV  327 (428)
Q Consensus       310 ~v~~~P~~~lid~~G~i~  327 (428)
                      ++.++|+++ +  +|+.+
T Consensus        47 g~~~vP~~~-~--~g~~~   61 (81)
T 1h75_A           47 GFRQLPVVI-A--GDLSW   61 (81)
T ss_dssp             TCCSSCEEE-E--TTEEE
T ss_pred             CCCccCEEE-E--CCEEE
Confidence            999999984 4  56543

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=97.87  E-value=3.7e-06  Score=79.20  Aligned_cols=60  Identities=12%  Similarity=0.349  Sum_probs=42.1

Q ss_pred             CEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCC
Q 014225           62 KVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIE  141 (428)
Q Consensus        62 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~  141 (428)
                      +..+++|||+||+||++..|.++++++++       .  .|.+|.+.                  ..+...+++++|+++
T Consensus       198 ~~~vV~F~A~WC~~Ck~l~p~le~lA~~l-------~--~Vd~d~~d------------------~~~~~~~la~~~gI~  250 (291)
T 3kp9_A          198 QIGGTMYGAYWCPHCQDQKELFGAAFDQV-------P--YVECSPNG------------------PGTPQAQECTEAGIT  250 (291)
T ss_dssp             HTTCEEEECTTCHHHHHHHHHHGGGGGGS-------C--EEESCSSC------------------SSSCCCHHHHTTTCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHHHc-------C--EEEEeecC------------------chhhHHHHHHHcCCc
Confidence            34479999999999999999999887553       1  23344210                  001016889999999


Q ss_pred             CCceEEE
Q 014225          142 GIPCLVV  148 (428)
Q Consensus       142 ~~P~~~l  148 (428)
                      ++||+++
T Consensus       251 ~vPT~~i  257 (291)
T 3kp9_A          251 SYPTWII  257 (291)
T ss_dssp             STTEEEE
T ss_pred             ccCeEEE
Confidence            9999554

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=97.82  E-value=6.8e-05  Score=54.89  Aligned_cols=59  Identities=12%  Similarity=0.218  Sum_probs=40.7

Q ss_pred             EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225          230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF  309 (428)
Q Consensus       230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  309 (428)
                      ++.|+++|||+|++..+.|.++                ++.+..+.++.+.+.                    .+..+.+
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~----------------~i~~~~~di~~~~~~--------------------~~~~~~~   46 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA----------------GLAYNTVDISLDDEA--------------------RDYVMAL   46 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT----------------TCCCEEEETTTCHHH--------------------HHHHHHT
T ss_pred             EEEEeCCCChHHHHHHHHHHHc----------------CCCcEEEECCCCHHH--------------------HHHHHHc
Confidence            5678999999999988887642                355666777755320                    1122468


Q ss_pred             CcCccceEEEECCCCcEE
Q 014225          310 DVQGIPCLVIIGPEGKTV  327 (428)
Q Consensus       310 ~v~~~P~~~lid~~G~i~  327 (428)
                      ++.++|++++   +|+.+
T Consensus        47 ~~~~vP~l~~---~g~~~   61 (75)
T 1r7h_A           47 GYVQAPVVEV---DGEHW   61 (75)
T ss_dssp             TCBCCCEEEE---TTEEE
T ss_pred             CCCccCEEEE---CCeEE
Confidence            9999999873   56653

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=97.76  E-value=2.7e-05  Score=61.40  Aligned_cols=65  Identities=17%  Similarity=0.174  Sum_probs=42.6

Q ss_pred             EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCH--HHHHHHHhcCCccccccCCcchhHHHH
Q 014225          230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ--TSFESYFGTMPWLALPFGDPTIKELTK  307 (428)
Q Consensus       230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~~  307 (428)
                      ++.|+++|||+|++..+.|.++...+           ++  +..+.++.+.  .+.                  ...+.+
T Consensus        14 v~~f~~~~C~~C~~~~~~L~~~~~~~-----------~~--~~~vdi~~~~~~~~~------------------~~~l~~   62 (105)
T 1kte_A           14 VVVFIKPTCPFCRKTQELLSQLPFKE-----------GL--LEFVDITATSDTNEI------------------QDYLQQ   62 (105)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHSCBCT-----------TS--EEEEEGGGSTTHHHH------------------HHHHHH
T ss_pred             EEEEEcCCCHhHHHHHHHHHHcCCCC-----------Cc--cEEEEccCCCCHHHH------------------HHHHHH
Confidence            56699999999999998887543221           12  4445655431  111                  145777


Q ss_pred             hcCcCccceEEEECCCCcEEe
Q 014225          308 YFDVQGIPCLVIIGPEGKTVT  328 (428)
Q Consensus       308 ~~~v~~~P~~~lid~~G~i~~  328 (428)
                      .+|+.++|++++   +|+.+.
T Consensus        63 ~~g~~~vP~i~~---~g~~i~   80 (105)
T 1kte_A           63 LTGARTVPRVFI---GKECIG   80 (105)
T ss_dssp             HHSCCCSCEEEE---TTEEEE
T ss_pred             HhCCCCcCeEEE---CCEEEe
Confidence            889999999853   677765

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=97.75  E-value=7.9e-05  Score=65.54  Aligned_cols=42  Identities=17%  Similarity=0.279  Sum_probs=36.0

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEec
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS  104 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~  104 (428)
                      .++++++.||..|||+|..+.|.+.++.+++.++   +.+..+.+
T Consensus        24 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~---v~~~~~p~   65 (193)
T 2rem_A           24 AGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAKD---VRFTLVPA   65 (193)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTSCTT---EEEEEEEC
T ss_pred             CCCeEEEEEECCCChhHhhhhHHHHHHHHhcCCc---eEEEEeCc
Confidence            6789999999999999999999999998887543   77776665

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=97.74  E-value=0.00013  Score=64.54  Aligned_cols=43  Identities=21%  Similarity=0.347  Sum_probs=37.3

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD  105 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D  105 (428)
                      .++++++.||..|||+|+.+.|.+.++.+++.++   +.+..+.++
T Consensus        23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~~---v~~~~~p~~   65 (193)
T 3hz8_A           23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDD---MYLRTEHVV   65 (193)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCTT---EEEEEEECC
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCCC---eEEEEecCC
Confidence            4799999999999999999999999999888763   777777764

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=97.71  E-value=2.5e-05  Score=62.92  Aligned_cols=65  Identities=11%  Similarity=0.112  Sum_probs=43.5

Q ss_pred             EEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEE---EEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          229 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFE---VVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       229 vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~---iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      .++.|+++|||+|++..+.|.++                ++.   +..|.+|.+.+..                ....++
T Consensus        20 ~vv~f~~~~Cp~C~~~~~~L~~~----------------~~~~~~~~~vdi~~~~~~~----------------~~~~~l   67 (114)
T 2hze_A           20 KVTIFVKYTCPFCRNALDILNKF----------------SFKRGAYEIVDIKEFKPEN----------------ELRDYF   67 (114)
T ss_dssp             CEEEEECTTCHHHHHHHHHHTTS----------------CBCTTSEEEEEGGGSSSHH----------------HHHHHH
T ss_pred             CEEEEEeCCChhHHHHHHHHHHc----------------CCCcCceEEEEccCCCChH----------------HHHHHH
Confidence            46779999999999988877642                233   5566666432000                001467


Q ss_pred             HHhcCcCccceEEEECCCCcEEe
Q 014225          306 TKYFDVQGIPCLVIIGPEGKTVT  328 (428)
Q Consensus       306 ~~~~~v~~~P~~~lid~~G~i~~  328 (428)
                      .+.+|+.++|++++   +|+.+.
T Consensus        68 ~~~~g~~~vP~v~i---~g~~ig   87 (114)
T 2hze_A           68 EQITGGKTVPRIFF---GKTSIG   87 (114)
T ss_dssp             HHHHSCCSSCEEEE---TTEEEE
T ss_pred             HHHhCCCCcCEEEE---CCEEEe
Confidence            78899999998754   687764

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=97.69  E-value=0.00022  Score=54.99  Aligned_cols=78  Identities=15%  Similarity=0.265  Sum_probs=50.6

Q ss_pred             EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHh-
Q 014225          230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKY-  308 (428)
Q Consensus       230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-  308 (428)
                      |+.|+.+|||+|.+....|.+       +         ++.+..++++.+.+..+                   .+.+. 
T Consensus         6 I~vYs~~~Cp~C~~aK~~L~~-------~---------gi~y~~idi~~d~~~~~-------------------~~~~~~   50 (92)
T 2lqo_A            6 LTIYTTSWCGYCLRLKTALTA-------N---------RIAYDEVDIEHNRAAAE-------------------FVGSVN   50 (92)
T ss_dssp             EEEEECTTCSSHHHHHHHHHH-------T---------TCCCEEEETTTCHHHHH-------------------HHHHHS
T ss_pred             EEEEcCCCCHhHHHHHHHHHh-------c---------CCceEEEEcCCCHHHHH-------------------HHHHHc
Confidence            566789999999987776653       2         56677788887654322                   22222 


Q ss_pred             cCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHh
Q 014225          309 FDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAK  362 (428)
Q Consensus       309 ~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~  362 (428)
                      .|..++|++++  .||.++.-               ++   .++|.++|.+++.
T Consensus        51 ~G~~tVP~I~i--~Dg~~l~~---------------~~---~~el~~~L~el~g   84 (92)
T 2lqo_A           51 GGNRTVPTVKF--ADGSTLTN---------------PS---ADEVKAKLVKIAG   84 (92)
T ss_dssp             SSSSCSCEEEE--TTSCEEES---------------CC---HHHHHHHHHHHHC
T ss_pred             CCCCEeCEEEE--eCCEEEeC---------------CC---HHHHHHHHHHhcC
Confidence            37889998754  67777643               12   2566777776554

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=97.68  E-value=0.0004  Score=59.98  Aligned_cols=51  Identities=12%  Similarity=0.201  Sum_probs=41.8

Q ss_pred             EEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEec
Q 014225           53 QVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS  104 (428)
Q Consensus        53 ~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~  104 (428)
                      .+.+....++++++.|+..|||+|..+.|.+.++.++|.+.+ ++.++...+
T Consensus        19 ~~~~G~~~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~-~v~~~~~~~   69 (175)
T 1z6m_A           19 GLHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSG-KVERIIKLF   69 (175)
T ss_dssp             SEEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEC
T ss_pred             CcccCCCCCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCC-cEEEEEEeC
Confidence            356666678999999999999999999999999999984433 478887665

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=97.65  E-value=0.00019  Score=60.64  Aligned_cols=92  Identities=21%  Similarity=0.287  Sum_probs=56.0

Q ss_pred             ecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC-----CCH-------------
Q 014225          219 VPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD-----RDQ-------------  280 (428)
Q Consensus       219 v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d-----~~~-------------  280 (428)
                      +.+..-.++++|+.|+.++||+|+++.+.|.++    .           ++.|+.+.+-     .+.             
T Consensus         7 i~~~~~~a~~~vv~f~D~~Cp~C~~~~~~l~~l----~-----------~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~   71 (147)
T 3gv1_A            7 IKEVRGNGKLKVAVFSDPDCPFCKRLEHEFEKM----T-----------DVTVYSFMMPIAGLHPDAARKAQILWCQPDR   71 (147)
T ss_dssp             EEEEETTCCEEEEEEECTTCHHHHHHHHHHTTC----C-----------SEEEEEEECCCTTTCTTHHHHHHHHHTSSSH
T ss_pred             eeeecCCCCEEEEEEECCCChhHHHHHHHHhhc----C-----------ceEEEEEEccccccChhHHHHHHHHHcCCCH
Confidence            334444578999999999999999999987653    1           3666655431     111             


Q ss_pred             -HHHHHHHhc--CCc--cccccCCcchhHHHHhcCcCccceEEEECCCCcEE
Q 014225          281 -TSFESYFGT--MPW--LALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV  327 (428)
Q Consensus       281 -~~~~~~~~~--~~~--~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~  327 (428)
                       ..|...+..  .+-  -......+.+..+++.+||+++||+++  .+|+++
T Consensus        72 ~~a~~~~~~~g~~~~~~~~~~~~v~~~~~la~~~gI~gtPt~vi--~nG~~i  121 (147)
T 3gv1_A           72 AKAWTDWMRKGKFPVGGSICDNPVAETTSLGEQFGFNGTPTLVF--PNGRTQ  121 (147)
T ss_dssp             HHHHHHHHHHCCCCTTCCCCSCSHHHHHHHHHHTTCCSSCEEEC--TTSCEE
T ss_pred             HHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHhCCCccCEEEE--ECCEEe
Confidence             112222211  000  000111235678899999999999987  577753

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=97.64  E-value=0.00012  Score=63.64  Aligned_cols=34  Identities=21%  Similarity=0.422  Sum_probs=29.6

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhh
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQN  258 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~  258 (428)
                      .++++|+.|+.-.||+|.++.+.+.++.+++.+.
T Consensus        20 ~~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~~   53 (184)
T 4dvc_A           20 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEG   53 (184)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTT
T ss_pred             CCCCEEEEEECCCCHhHHHHhHHHHHHHhhcCCc
Confidence            4688999999999999999999999988887654

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=97.63  E-value=0.00012  Score=54.63  Aligned_cols=53  Identities=13%  Similarity=0.271  Sum_probs=37.0

Q ss_pred             EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCc
Q 014225           65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP  144 (428)
Q Consensus        65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P  144 (428)
                      ++.|+++||++|+...+.|.+       .+  +.+..+++|.+.+                    . ....+.+++.++|
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~-------~~--i~~~~vdi~~~~~--------------------~-~~~~~~~g~~~vP   52 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMEN-------RG--FDFEMINVDRVPE--------------------A-AEALRAQGFRQLP   52 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH-------TT--CCCEEEETTTCHH--------------------H-HHHHHHTTCCSSC
T ss_pred             EEEEcCCCChhHHHHHHHHHH-------CC--CCeEEEECCCCHH--------------------H-HHHHHHhCCCccC
Confidence            577999999999998887765       23  5566677765533                    0 1222358899999


Q ss_pred             eEE
Q 014225          145 CLV  147 (428)
Q Consensus       145 ~~~  147 (428)
                      +++
T Consensus        53 ~~~   55 (81)
T 1h75_A           53 VVI   55 (81)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            873

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=97.60  E-value=8.4e-05  Score=58.52  Aligned_cols=60  Identities=15%  Similarity=0.149  Sum_probs=38.6

Q ss_pred             EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCc
Q 014225           65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP  144 (428)
Q Consensus        65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P  144 (428)
                      ++.|+++|||+|++..+.|.++...++    +  +..+++|.+..                 .......+.+.+++.++|
T Consensus        14 v~~f~~~~C~~C~~~~~~L~~~~~~~~----~--~~~vdi~~~~~-----------------~~~~~~~l~~~~g~~~vP   70 (105)
T 1kte_A           14 VVVFIKPTCPFCRKTQELLSQLPFKEG----L--LEFVDITATSD-----------------TNEIQDYLQQLTGARTVP   70 (105)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHSCBCTT----S--EEEEEGGGSTT-----------------HHHHHHHHHHHHSCCCSC
T ss_pred             EEEEEcCCCHhHHHHHHHHHHcCCCCC----c--cEEEEccCCCC-----------------HHHHHHHHHHHhCCCCcC
Confidence            566999999999998888775422211    1  44455554421                 011125677889999999


Q ss_pred             eEE
Q 014225          145 CLV  147 (428)
Q Consensus       145 ~~~  147 (428)
                      +++
T Consensus        71 ~i~   73 (105)
T 1kte_A           71 RVF   73 (105)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            963

>4h86_A Peroxiredoxin type-2; oxidoreductase; 2.00A {Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A 4dss_A

Probab=97.59  E-value=0.00018  Score=63.20  Aligned_cols=102  Identities=16%  Similarity=0.241  Sum_probs=75.5

Q ss_pred             eeccccc--CCcEEEEEEe-ccCChhHHh-hhHHHHHHHHHH-HhhhhhcCCCCCCE-EEEEEEcCCCHHHHHHHHhcC-
Q 014225          218 KVPVSSL--VGKTVGLYFS-ARWCIPCEK-FMPKLLSIYQKI-KQNLVEKGDALEDF-EVVFVSTDRDQTSFESYFGTM-  290 (428)
Q Consensus       218 ~v~l~~~--~gk~vll~F~-a~wC~~C~~-~~~~l~~l~~~~-~~~~~~~~~~~~~~-~iv~is~d~~~~~~~~~~~~~-  290 (428)
                      ++++++.  +||.|||++. +...|.|.. .+|.+.+.++++ +.+         ++ +|+.|++| +.-..++|.+.+ 
T Consensus        59 ~v~ls~~~~k~KkVVLf~vPGAFTPtCS~~hlPgf~~~~d~~~k~k---------Gvd~I~ciSVN-D~FVm~AW~k~~~  128 (199)
T 4h86_A           59 TVEWSKLISENKKVIITGAPAAFSPTCTVSHIPGYINYLDELVKEK---------EVDQVIVVTVD-NPFANQAWAKSLG  128 (199)
T ss_dssp             EEEHHHHHHHCSEEEEEECSCTTCHHHHHTTHHHHHHHHHHHHHHS---------CCCEEEEEESS-CHHHHHHHHHHTT
T ss_pred             eeEHHHHhcCCCeEEEEEeCCCcCCcCChhhChHHHHHHHHHHHhc---------CCcEEEEEEcC-CHHHHHHHHHHhc
Confidence            6777774  6888888777 578999987 799998888775 655         44 78999998 444555554443 


Q ss_pred             --CccccccCCcchhHHHHhcCcC---------ccceEEEECCCCcEEecc
Q 014225          291 --PWLALPFGDPTIKELTKYFDVQ---------GIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       291 --~~~~~~~~~d~~~~~~~~~~v~---------~~P~~~lid~~G~i~~~~  330 (428)
                        ....++++.|.+.++.+.+|+.         +....+||| ||+|.+..
T Consensus       129 ~~~~~~i~~laD~~~eftkalGl~~~~~~gg~RS~Rya~IVd-DGvV~~~~  178 (199)
T 4h86_A          129 VKDTTHIKFASDPGCAFTKSIGFELAVGDGVYWSGRWAMVVE-NGIVTYAA  178 (199)
T ss_dssp             CCCCSSEEEEECGGGHHHHHTTCEEEEETTEEEECSEEEEEE-TTEEEEEE
T ss_pred             ccccccccccCCcchHHHHhcCceeecCCCcceeeEEEEEEE-CCEEEEEE
Confidence              3356888889999999999872         334578886 99988764

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=97.56  E-value=0.00027  Score=61.97  Aligned_cols=30  Identities=23%  Similarity=0.122  Sum_probs=28.2

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKI  255 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~  255 (428)
                      ++++||.|+..|||+|.++.|.+.++.+++
T Consensus        22 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~   51 (185)
T 3feu_A           22 GMAPVTEVFALSCGHCRNMENFLPVISQEA   51 (185)
T ss_dssp             CCCSEEEEECTTCHHHHHHGGGHHHHHHHH
T ss_pred             CCCEEEEEECCCChhHHHhhHHHHHHHHHh
Confidence            688999999999999999999999998887

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=97.49  E-value=8.4e-05  Score=59.76  Aligned_cols=59  Identities=17%  Similarity=0.164  Sum_probs=39.8

Q ss_pred             EEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEE---EEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           63 VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFE---VVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        63 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~---ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      ..++.|+++|||+|++..+.|.+       .+  +.   +..+++|.+.+                 .......+.+.++
T Consensus        19 ~~vv~f~~~~Cp~C~~~~~~L~~-------~~--~~~~~~~~vdi~~~~~-----------------~~~~~~~l~~~~g   72 (114)
T 2hze_A           19 NKVTIFVKYTCPFCRNALDILNK-------FS--FKRGAYEIVDIKEFKP-----------------ENELRDYFEQITG   72 (114)
T ss_dssp             TCEEEEECTTCHHHHHHHHHHTT-------SC--BCTTSEEEEEGGGSSS-----------------HHHHHHHHHHHHS
T ss_pred             CCEEEEEeCCChhHHHHHHHHHH-------cC--CCcCceEEEEccCCCC-----------------hHHHHHHHHHHhC
Confidence            34677999999999998887654       23  33   55566655421                 1122257888899


Q ss_pred             CCCCceEE
Q 014225          140 IEGIPCLV  147 (428)
Q Consensus       140 v~~~P~~~  147 (428)
                      +.++|+++
T Consensus        73 ~~~vP~v~   80 (114)
T 2hze_A           73 GKTVPRIF   80 (114)
T ss_dssp             CCSSCEEE
T ss_pred             CCCcCEEE
Confidence            99999764

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.45  E-value=0.00016  Score=59.64  Aligned_cols=54  Identities=17%  Similarity=0.129  Sum_probs=36.8

Q ss_pred             EecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCceEE
Q 014225           68 FSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLV  147 (428)
Q Consensus        68 F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~  147 (428)
                      |+++||++|+...+.|.++       +  +.+..+.+|.+.+                 .......+.+.+++.++|+++
T Consensus        32 f~~~~Cp~C~~~~~~L~~~-------~--i~~~~vdid~~~~-----------------~~~~~~~l~~~~g~~~vP~l~   85 (130)
T 2cq9_A           32 FSKTSCSYCTMAKKLFHDM-------N--VNYKVVELDLLEY-----------------GNQFQDALYKMTGERTVPRIF   85 (130)
T ss_dssp             EECSSCSHHHHHHHHHHHH-------T--CCCEEEETTTSTT-----------------HHHHHHHHHHHHSSCCSSEEE
T ss_pred             EEcCCChHHHHHHHHHHHc-------C--CCcEEEECcCCcC-----------------cHHHHHHHHHHhCCCCcCEEE
Confidence            9999999999988888764       2  3344455554411                 011225688889999999874

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.45  E-value=0.00027  Score=58.23  Aligned_cols=61  Identities=18%  Similarity=0.288  Sum_probs=41.9

Q ss_pred             EEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCH--HHHHHHHhcCCccccccCCcchhHHHHh
Q 014225          231 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ--TSFESYFGTMPWLALPFGDPTIKELTKY  308 (428)
Q Consensus       231 l~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~~~  308 (428)
                      +.|+++|||+|+...+.|.++                ++.+..+.+|.+.  .++                  ..++.+.
T Consensus        30 vvf~~~~Cp~C~~~~~~L~~~----------------~i~~~~vdid~~~~~~~~------------------~~~l~~~   75 (130)
T 2cq9_A           30 VIFSKTSCSYCTMAKKLFHDM----------------NVNYKVVELDLLEYGNQF------------------QDALYKM   75 (130)
T ss_dssp             EEEECSSCSHHHHHHHHHHHH----------------TCCCEEEETTTSTTHHHH------------------HHHHHHH
T ss_pred             EEEEcCCChHHHHHHHHHHHc----------------CCCcEEEECcCCcCcHHH------------------HHHHHHH
Confidence            349999999999998888764                1334556666431  111                  1357788


Q ss_pred             cCcCccceEEEECCCCcEEe
Q 014225          309 FDVQGIPCLVIIGPEGKTVT  328 (428)
Q Consensus       309 ~~v~~~P~~~lid~~G~i~~  328 (428)
                      +++.++|++++   +|+.+.
T Consensus        76 ~g~~~vP~l~i---~G~~ig   92 (130)
T 2cq9_A           76 TGERTVPRIFV---NGTFIG   92 (130)
T ss_dssp             HSSCCSSEEEE---TTEEEE
T ss_pred             hCCCCcCEEEE---CCEEEc
Confidence            99999999853   677664

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=97.45  E-value=0.0003  Score=59.28  Aligned_cols=61  Identities=18%  Similarity=0.253  Sum_probs=41.2

Q ss_pred             EEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC--HHHHHHHHhcCCccccccCCcchhHHHHh
Q 014225          231 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD--QTSFESYFGTMPWLALPFGDPTIKELTKY  308 (428)
Q Consensus       231 l~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  308 (428)
                      +.|+++|||+|+...+.|.++.                +.+..+.+|.+  ..++                  ..++.+.
T Consensus        52 vvf~~~~Cp~C~~~k~~L~~~~----------------i~~~~vdId~~~~~~~~------------------~~~L~~~   97 (146)
T 2ht9_A           52 VIFSKTSCSYCTMAKKLFHDMN----------------VNYKVVELDLLEYGNQF------------------QDALYKM   97 (146)
T ss_dssp             EEEECTTCHHHHHHHHHHHHHT----------------CCCEEEEGGGCTTHHHH------------------HHHHHHH
T ss_pred             EEEECCCChhHHHHHHHHHHcC----------------CCeEEEECccCcCCHHH------------------HHHHHHH
Confidence            3499999999999988887542                23444555533  1111                  1357788


Q ss_pred             cCcCccceEEEECCCCcEEe
Q 014225          309 FDVQGIPCLVIIGPEGKTVT  328 (428)
Q Consensus       309 ~~v~~~P~~~lid~~G~i~~  328 (428)
                      +|+.++|++++   +|+.+.
T Consensus        98 ~g~~tvP~ifi---~G~~ig  114 (146)
T 2ht9_A           98 TGERTVPRIFV---NGTFIG  114 (146)
T ss_dssp             HSCCCSCEEEE---TTEEEE
T ss_pred             hCCCCcCeEEE---CCEEEe
Confidence            99999999853   677764

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=97.42  E-value=4.2e-05  Score=68.05  Aligned_cols=45  Identities=22%  Similarity=0.293  Sum_probs=38.0

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhcCCCcEEEEEEecCCC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDED  107 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~vs~D~~  107 (428)
                      .++++||.||+.|||||+.+.|.|   .++.++++++   +.+..+.++..
T Consensus       112 ~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~---v~~~~~~v~~~  159 (197)
T 1un2_A          112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEG---VKMTKYHVNFM  159 (197)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTT---CCEEEEECSSS
T ss_pred             CCCCEEEEEECCCChhHHHhCcccccHHHHHHHCCCC---CEEEEeccCcC
Confidence            478999999999999999999998   8888888653   77777777653

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=97.42  E-value=0.001  Score=52.24  Aligned_cols=23  Identities=17%  Similarity=0.340  Sum_probs=19.1

Q ss_pred             EEEEEeccCChhHHhhhHHHHHH
Q 014225          229 VGLYFSARWCIPCEKFMPKLLSI  251 (428)
Q Consensus       229 vll~F~a~wC~~C~~~~~~l~~l  251 (428)
                      .++.|+++|||+|++..+.|.++
T Consensus        23 ~v~ly~~~~Cp~C~~ak~~L~~~   45 (103)
T 3nzn_A           23 KVIMYGLSTCVWCKKTKKLLTDL   45 (103)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHH
T ss_pred             eEEEEcCCCCchHHHHHHHHHHc
Confidence            45668999999999999888753

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.42  E-value=0.0052  Score=53.42  Aligned_cols=113  Identities=12%  Similarity=0.155  Sum_probs=67.6

Q ss_pred             HhhhhccCCCCcccCCCCCceeccc----ccCCcEEEEEEeccCChhHHhhhHHH---HHHHHHHHhhhhhcCCCCCCEE
Q 014225          198 LINLLTNHDRGYLLGHPPDEKVPVS----SLVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFE  270 (428)
Q Consensus       198 ~~~~~g~~~p~f~l~~~g~~~v~l~----~~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~  270 (428)
                      .....|...|.|--..-.+ .+..+    .-.+|+++|+++++||+.|..+...+   .++.+-++.          ++.
T Consensus        24 f~~~yg~~~p~F~~gs~~~-Al~~A~~~~k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~----------nfV   92 (178)
T 2ec4_A           24 FSSRYGDCHPVFFIGSLEA-AFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQ----------NFI   92 (178)
T ss_dssp             HHHHHCSCCCCCCCSCHHH-HHHTTTSSCTTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHH----------TEE
T ss_pred             HHHHhCCCCCCeeeCCHHH-HHHHHHhhhhhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHc----------CEE
Confidence            4445577888886322222 34444    45689999999999999999877543   334444554          466


Q ss_pred             EEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHH---HhcCcCccceEEEECCCC---cEEec
Q 014225          271 VVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT---KYFDVQGIPCLVIIGPEG---KTVTK  329 (428)
Q Consensus       271 iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~v~~~P~~~lid~~G---~i~~~  329 (428)
                      +.+.+++.+ +....++....   -.+    ...++   +.|++.++|++++|++.|   +++.+
T Consensus        93 ~w~~dv~~~-e~~~~~~~~~~---~~~----g~~~a~~~~~~~~~~~P~l~ii~~~~~~~~vl~~  149 (178)
T 2ec4_A           93 TWAWDLTKD-SNRARFLTMCN---RHF----GSVVAQTIRTQKTDQFPLFLIIMGKRSSNEVLNV  149 (178)
T ss_dssp             EEEEECCSH-HHHHHHHHHHH---HHT----CHHHHHHHHHSCSTTCSEEEEECCCSSCCCEEEE
T ss_pred             EEEEeCCCc-hhhhhhhhhhh---hhh----HHHHHHHHhhcCCCCCCeEEEEEcCCCceEEEEE
Confidence            777777643 22222211100   000    02333   448999999999998774   55655

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=97.41  E-value=0.00019  Score=60.58  Aligned_cols=54  Identities=17%  Similarity=0.129  Sum_probs=36.7

Q ss_pred             EecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCceEE
Q 014225           68 FSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLV  147 (428)
Q Consensus        68 F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~  147 (428)
                      |+++|||+|+...+.|.++       +  +.+..+++|.+.+                 .......+.+.+++.++|+++
T Consensus        54 f~~~~Cp~C~~~k~~L~~~-------~--i~~~~vdId~~~~-----------------~~~~~~~L~~~~g~~tvP~if  107 (146)
T 2ht9_A           54 FSKTSCSYCTMAKKLFHDM-------N--VNYKVVELDLLEY-----------------GNQFQDALYKMTGERTVPRIF  107 (146)
T ss_dssp             EECTTCHHHHHHHHHHHHH-------T--CCCEEEEGGGCTT-----------------HHHHHHHHHHHHSCCCSCEEE
T ss_pred             EECCCChhHHHHHHHHHHc-------C--CCeEEEECccCcC-----------------CHHHHHHHHHHhCCCCcCeEE
Confidence            9999999999988887764       2  2334455554411                 111225688889999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	428
d1i5ga_	144	c.47.1.10 (A:) Tryparedoxin II {Crithidia fascicul	6e-24
d1i5ga_	144	c.47.1.10 (A:) Tryparedoxin II {Crithidia fascicul	2e-23
d1v5na_	89	g.49.1.3 (A:) Pdi-like hypothetical protein At1g60	3e-19
d1o73a_	144	c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei	2e-16
d1o73a_	144	c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei	1e-15
d1o8xa_	144	c.47.1.10 (A:) Tryparedoxin I {Crithidia fascicula	6e-10
d1o8xa_	144	c.47.1.10 (A:) Tryparedoxin I {Crithidia fascicula	2e-09
d2fy6a1	143	c.47.1.10 (A:33-175) Peptide methionine sulfoxide	6e-09
d2fy6a1	143	c.47.1.10 (A:33-175) Peptide methionine sulfoxide	2e-07
d2b5xa1	143	c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase	6e-08
d2b5xa1	143	c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase	3e-07
d1sena_	135	c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19	4e-06
d1jfua_	176	c.47.1.10 (A:) Membrane-anchored thioredoxin-like	2e-04
d1jfua_	176	c.47.1.10 (A:) Membrane-anchored thioredoxin-like	0.002
d1z6na1	166	c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Ps	2e-04
d2hfda1	132	c.47.1.20 (A:1-132) Hydrogenase-1 operon protein H	6e-04
d1lu4a_	134	c.47.1.10 (A:) Soluble secreted antigen MPT53 {Myc	7e-04
d1lu4a_	134	c.47.1.10 (A:) Soluble secreted antigen MPT53 {Myc	0.004
d1wp0a1	160	c.47.1.10 (A:138-297) Thioredoxin-like protein Sco	0.004

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

 Score = 94.9 bits (235), Expect = 6e-24
 Identities = 48/134 (35%), Positives = 69/134 (51%), Gaps = 11/134 (8%)

Query: 217 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 276
             + + SL GKTV  YFSA WC P   F P+L+  Y+   +         ++FEV+ +S 
Sbjct: 19  ADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK--------KNFEVMLISW 70

Query: 277 DRDQTSFESYFGTMPWLALPFGDPTIKE-LTKYFDVQGIPCLVIIGPE-GKTVTKQGRNL 334
           D     F+ Y+  MPWLALPF D    E LT  FDV+ IP LV +  + G  +T Q R +
Sbjct: 71  DESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 130

Query: 335 I-NLYQENAYPFTE 347
           +    +   +P+  
Sbjct: 131 VVKDPEAKDFPWPN 144

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

 Score = 92.9 bits (230), Expect = 2e-23
 Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 2/132 (1%)

Query: 46  LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 105
           +L      + +  L GK    YFSA+W PP   FT  L+D Y+       +FEV+ +S D
Sbjct: 13  VLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK-KNFEVMLISWD 71

Query: 106 EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVE 165
           E    F +Y A MPWLA+P+ D +  + L   FD++ IP LV ++  D  +  T      
Sbjct: 72  ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEA-DSGNIITTQARTM 130

Query: 166 LIYKYGIRAFPF 177
           ++     + FP+
Sbjct: 131 VVKDPEAKDFPW 142

>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 89

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: C1-like domain
domain: Pdi-like hypothetical protein At1g60420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 80.0 bits (197), Expect = 3e-19
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 5/77 (6%)

Query: 341 NAYPFTEAKLEFLEKQMEEEAKNLPRSEFHIGH-RHELNLVSEGTGGGPFICCDCDEQGS 399
           +    TE +L+ +E + +E AK+ P+   H+ H  HEL L         + C  C+E+G+
Sbjct: 3   SGSSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTR----VQVYTCDKCEEEGT 58

Query: 400 GWAYQCLECGYEVHPKC 416
            W+Y C EC +++H KC
Sbjct: 59  IWSYHCDECDFDLHAKC 75

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

 Score = 73.8 bits (180), Expect = 2e-16
 Identities = 54/134 (40%), Positives = 72/134 (53%), Gaps = 11/134 (8%)

Query: 216 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 275
             +V + SLVGKTV LYFSA WC PC  F P L   Y+K            ++FEVV +S
Sbjct: 18  SGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVA--------KNFEVVLIS 69

Query: 276 TDRDQTSFESYFGTMPWLALPFG-DPTIKELTKYFDVQGIPCLVIIGPE-GKTVTKQGRN 333
            D +++ F  Y+G MPWLALPF    T+ EL K F V+ IP L+ I  + G  +  Q R 
Sbjct: 70  WDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQART 129

Query: 334 -LINLYQENAYPFT 346
            +I       +P+ 
Sbjct: 130 RVIEDPDGANFPWP 143

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

 Score = 71.5 bits (174), Expect = 1e-15
 Identities = 46/133 (34%), Positives = 65/133 (48%), Gaps = 2/133 (1%)

Query: 46  LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 105
            L     +V +  L GK   LYFSA+W PPC  FT VL + YE+      +FEVV +S D
Sbjct: 13  NLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVA-KNFEVVLISWD 71

Query: 106 EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVE 165
           E+ + F++Y   MPWLA+P+    T   L + F +E IP L+ +   D            
Sbjct: 72  ENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINA-DTGAIIGTQARTR 130

Query: 166 LIYKYGIRAFPFT 178
           +I       FP+ 
Sbjct: 131 VIEDPDGANFPWP 143

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

 Score = 55.1 bits (131), Expect = 6e-10
 Identities = 50/136 (36%), Positives = 77/136 (56%), Gaps = 11/136 (8%)

Query: 216 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 275
           D +V V SL GK V  YFSA WC P   F P+L+  Y K  ++        ++FEVVF +
Sbjct: 16  DGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHES--------KNFEVVFCT 67

Query: 276 TDRDQTSFESYFGTMPWLALPFGDP-TIKELTKYFDVQGIPCLVIIGPE-GKTVTKQGR- 332
            D ++  F  YF  MPWLA+PF     +++L+K+F+V+ IP L+ +  + G  VT + R 
Sbjct: 68  WDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARA 127

Query: 333 NLINLYQENAYPFTEA 348
            L+   +   +P+ +A
Sbjct: 128 TLVKDPEGEQFPWKDA 143

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

 Score = 53.9 bits (128), Expect = 2e-09
 Identities = 47/133 (35%), Positives = 72/133 (54%), Gaps = 2/133 (1%)

Query: 46  LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 105
            L +   +V+V  L GK+   YFSA+W PP   FT  L++ Y++  +   +FEVVF + D
Sbjct: 11  KLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDK-FHESKNFEVVFCTWD 69

Query: 106 EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVE 165
           E+ + F  Y A MPWLAVP++  E  + L++ F++E IP L+ +   D  D  T      
Sbjct: 70  EEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDA-DSGDVVTTRARAT 128

Query: 166 LIYKYGIRAFPFT 178
           L+       FP+ 
Sbjct: 129 LVKDPEGEQFPWK 141

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

 Score = 52.2 bits (124), Expect = 6e-09
 Identities = 20/145 (13%), Positives = 41/145 (28%), Gaps = 15/145 (10%)

Query: 216 DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 275
           +    V     K   + F A WC  C   +       +K  Q+       L         
Sbjct: 13  NRPASVYLKKDKPTLIKFWASWCPLCLSELG----QTEKWAQDAKFSSANLITVASPGFL 68

Query: 276 TDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLI 335
            ++    F+ ++  + +  LP        + +  ++   P   +IG +G           
Sbjct: 69  HEKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIV----- 123

Query: 336 NLYQENAYPFTEAKLEFLEKQMEEE 360
                      EA+   L +    +
Sbjct: 124 ------KGSINEAQALALIRDPNAD 142

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

 Score = 47.6 bits (112), Expect = 2e-07
 Identities = 17/145 (11%), Positives = 38/145 (26%), Gaps = 16/145 (11%)

Query: 46  LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDF--EVVFVS 103
           L         V   + K T + F A+W P C +  G      ++ + + ++         
Sbjct: 8   LKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGF 67

Query: 104 SDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG 163
             E  +                   +    + +  +I   P   ++            DG
Sbjct: 68  LHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGK----------DG 117

Query: 164 VELIYKYGIRAFPFTKEKLEELQKE 188
                  G       + +   L ++
Sbjct: 118 DVQRIVKG----SINEAQALALIRD 138

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

 Score = 49.5 bits (117), Expect = 6e-08
 Identities = 17/135 (12%), Positives = 44/135 (32%), Gaps = 10/135 (7%)

Query: 51  GTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA 110
           G   +   +  K T ++F +     C      + +  ++ ++  +   V    S++DL+ 
Sbjct: 19  GEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDP 78

Query: 111 FNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKY 170
                            +++  AL   F+ E +P   V              G    ++ 
Sbjct: 79  GKIKETAAEHDITQPIFVDSDHALTDAFENEYVPAYYVFDK----------TGQLRHFQA 128

Query: 171 GIRAFPFTKEKLEEL 185
           G       ++++  +
Sbjct: 129 GGSGMKMLEKRVNRV 143

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

 Score = 47.2 bits (111), Expect = 3e-07
 Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 6/114 (5%)

Query: 217 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 276
           E      +  K   ++F +  C  C++ MP++     K +  L      +   E      
Sbjct: 20  EVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPG 79

Query: 277 DRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 330
              +T+ E       ++     D     LT  F+ + +P   +    G+    Q
Sbjct: 80  KIKETAAEHDITQPIFV-----DSD-HALTDAFENEYVPAYYVFDKTGQLRHFQ 127

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 4e-06
 Identities = 16/131 (12%), Positives = 41/131 (31%), Gaps = 8/131 (6%)

Query: 213 HPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVV 272
              ++    ++  G  + +     WC  C+   PK     +  + +         +F +V
Sbjct: 12  RTLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELS--------HNFVMV 63

Query: 273 FVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR 332
            +  + +    +          + F DP+ K   +  +  G P         + V +  +
Sbjct: 64  NLEDEEEPKDEDFSPDGGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMK 123

Query: 333 NLINLYQENAY 343
                   +A+
Sbjct: 124 EAQERLTGDAF 134

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} Length = 176

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 4/113 (3%)

Query: 217 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 276
           +   +S   GKT+ +   A WC+PC K MP       +++  L      +    +     
Sbjct: 47  KPKKLSDFRGKTLLVNLWATWCVPCRKEMP----ALDELQGKLSGPNFEVVAINIDTRDP 102

Query: 277 DRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 329
           ++ +T  +    T             ++L       G+P  V++ P+G  +  
Sbjct: 103 EKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIAT 155

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} Length = 176

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 23/145 (15%), Positives = 44/145 (30%), Gaps = 14/145 (9%)

Query: 46  LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 105
             +  G   K+SD  GK   +   A W  PC      L ++  +L     +   + + + 
Sbjct: 41  FEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTR 100

Query: 106 EDLNAFNNYRACMPWLAVPYSDLETKKA--LNRKFDIEGIPCLVVLQPYDDKDDATLHDG 163
           +        +         ++D + K    L       G+P  V++ P           G
Sbjct: 101 DPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDP----------QG 150

Query: 164 VELIYKYGIRAFPFTKEKLEELQKE 188
              I         +  E   +L + 
Sbjct: 151 -CEIATI-AGPAEWASEDALKLIRA 173

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 15/122 (12%), Positives = 33/122 (27%), Gaps = 15/122 (12%)

Query: 221 VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ 280
           +  +  +   L     WC  C+  +  L    +              + E+  +S  R +
Sbjct: 49  LQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-----------NIELAIISKGRAE 97

Query: 281 TSFESYF--GTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLY 338
                      +    +   D           V+    ++  GP+     K G  L +  
Sbjct: 98  DDLRQRLALERIAIPLVLVLDEEFNL--LGRFVERPQAVLDGGPQALAAYKAGDYLEHAI 155

Query: 339 QE 340
            +
Sbjct: 156 GD 157

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

 Score = 37.7 bits (87), Expect = 6e-04
 Identities = 11/90 (12%), Positives = 24/90 (26%), Gaps = 7/90 (7%)

Query: 46  LLNQHGTQVKVSDLEG-------KVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFE 98
           +L +  T V  S L+         V  L       P   +   ++ ++  E  +      
Sbjct: 14  MLARGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVA 73

Query: 99  VVFVSSDEDLNAFNNYRACMPWLAVPYSDL 128
           +  +   E +            L     + 
Sbjct: 74  IADLEQSEAIGDRFGVFRFPATLVFTGGNY 103

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.3 bits (85), Expect = 7e-04
 Identities = 15/106 (14%), Positives = 27/106 (25%), Gaps = 6/106 (5%)

Query: 46  LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD 105
                G     + L+GK   L+F   W P C      L  V                   
Sbjct: 9   ATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVG 68

Query: 106 EDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQP 151
              +  + Y      L       +    +  ++++   P  V  + 
Sbjct: 69  AMQSFVSKYNLNFTNL------NDADGVIWARYNVPWQPAFVFYRA 108

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 35.3 bits (80), Expect = 0.004
 Identities = 20/109 (18%), Positives = 32/109 (29%), Gaps = 12/109 (11%)

Query: 217 EKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 276
                +SL GK   L+F   WC  C    P L  +                    V ++T
Sbjct: 15  APFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPA-----------VTFVGIAT 63

Query: 277 DRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGK 325
             D  + +S+            D     +   ++V   P  V    +G 
Sbjct: 64  RADVGAMQSFVSKYNLNFTNLNDAD-GVIWARYNVPWQPAFVFYRADGT 111

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.004
 Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 7/106 (6%)

Query: 46  LLNQHGTQVKVSDLEGKVTALYF-SANWYPPCGNFTGVLVDVYEELRNNGS------DFE 98
           L    G +    D  G+   +YF   +    C      ++ V +E+ +  +       F 
Sbjct: 5   LTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFI 64

Query: 99  VVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP 144
            +    D      N  +   P L       E    + R + +   P
Sbjct: 65  SIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSP 110

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	428
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.93
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.93
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.92
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.91
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.91
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	99.9
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.9
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.9
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	99.89
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.89
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.87
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.87
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.86
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.86
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.85
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.85
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	99.85
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.85
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	99.84
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.83
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	99.82
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	99.81
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	99.81
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.8
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.8
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.79
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	99.78
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.78
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	99.77
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	99.76
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.76
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	99.76
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	99.75
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.74
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	99.73
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	99.73
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	99.73
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	99.72
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.72
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	99.71
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	99.71
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	99.71
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	99.7
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	99.69
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.69
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	99.69
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	99.67
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	99.66
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	99.66
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.64
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	99.64
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	99.63
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	99.63
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	99.61
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.6
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.6
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	99.59
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.59
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	99.57
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	99.56
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	99.56
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	99.56
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.56
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.55
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	99.55
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.54
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.54
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.53
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.53
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.53
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.52
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.52
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	99.52
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.52
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.49
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.49
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.45
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	99.45
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.45
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	99.45
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.45
d1v5na_	89	Pdi-like hypothetical protein At1g60420 {Thale cre	99.44
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.43
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.41
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.41
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	99.41
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.41
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.39
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.38
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.38
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.38
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.37
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.37
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.37
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.35
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.34
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.34
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.34
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.33
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.33
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.33
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.32
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.32
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.31
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.31
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.3
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	99.3
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.29
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.29
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.27
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.25
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.24
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.23
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.23
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	99.21
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.18
d1hd2a_	161	Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606	99.17
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.17
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.17
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.16
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.15
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.15
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.15
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.13
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	99.12
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.11
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.05
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.04
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.02
d1tp9a1	162	Plant peroxiredoxin {Western balsam poplar(Populus	99.0
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	98.99
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	98.98
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	98.97
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	98.97
d1nm3a2	163	N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus	98.96
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	98.94
d1hd2a_	161	Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606	98.87
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	98.86
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	98.82
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.7
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	98.67
d1wjka_	100	Thioredoxin-like structure containing protein C330	98.62
d1tp9a1	162	Plant peroxiredoxin {Western balsam poplar(Populus	98.47
d1nm3a2	163	N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus	98.36
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.32
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	98.31
d1xiya1	179	1-Cys peroxiredoxin {Malaria parasite (Plasmodium	98.11
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	98.09
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	98.04
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	97.99
d1wjka_	100	Thioredoxin-like structure containing protein C330	97.97
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	97.68
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	97.61
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	97.46
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	97.27
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	97.11
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	97.08
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	96.97
d1xiya1	179	1-Cys peroxiredoxin {Malaria parasite (Plasmodium	96.93
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	96.92
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	96.78
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	96.77
d1kbea_	49	Kinase suppressor of Ras, Ksr {Mouse (Mus musculus	96.25
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	96.02
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	95.9
d1faqa_	52	RAF-1 {Human (Homo sapiens) [TaxId: 9606]}	95.63
d2fc7a1	69	Zinc finger ZZ-type-containing protein 3, ZZZ3 {Hu	95.46
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	95.39
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	95.36
d1tota1	52	CREB-binding protein, CBP {Mouse (Mus musculus) [T	95.29
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	95.29
d1tbna_	66	Protein kinase c-gamma {Rat (Rattus rattus) [TaxId	95.28
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	95.27
d2dipa1	85	Zinc finger ZZ-type-containing protein 2 {Human (H	95.18
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	95.13
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	95.02
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	95.01
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	95.0
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	94.77
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	94.7
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	94.63
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	94.22
d1xa6a3	62	Beta-chimaerin, middle domain {Human (Homo sapiens	94.1
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	93.99
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	93.8
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	93.38
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	92.29
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	91.74
d1r79a_	84	Diacylglycerol kinase delta {Human (Homo sapiens)	91.46
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	91.37
d1ptqa_	50	Protein kinase C-delta (PKCdelta) {Mouse (Mus musc	90.54
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	87.27
d1wiga1	32	Actin-binding LIM protein 2, abLIM2 {Human (Homo s	84.72
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	82.38
d2axoa1	225	Hypothetical protein Atu2684 {Agrobacterium tumefa	80.06

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=5.1e-26  Score=201.27  Aligned_cols=153  Identities=10%  Similarity=0.085  Sum_probs=127.7

Q ss_pred             hhccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC--
Q 014225          201 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD--  277 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d--  277 (428)
                      .+|.++|+|++ |.+|+ .++|++++||+|||+||++|||+|++++|.|.+++++|+++          +.+++|+.+  
T Consensus         7 ~vG~~aPdF~l~d~~G~-~~~Lsd~kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~----------v~~v~i~snd~   75 (187)
T d2cvba1           7 PLESPLIDAELPDPRGG-RYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK----------VAFVGINANDY   75 (187)
T ss_dssp             CTTCBCCCCEEECTTSC-EEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT----------EEEEEEECCCT
T ss_pred             CCCCccCccEeecCCCC-EEEHHHhCCCeEEEEEeCCCCccchhhhhhhhhhhhhcccc----------ceeeeeecccc
Confidence            46999999999 99999 99999999999999999999999999999999999999754          888888753  


Q ss_pred             -----CCHHHHHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHH
Q 014225          278 -----RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEF  352 (428)
Q Consensus       278 -----~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~  352 (428)
                           .+.+.++++.+..+ +++|++.|....+++.|++.++|++||||++|+|++++..++.  ++..    ......+
T Consensus        76 ~~~~~~~~e~~~~~~~~~~-~~~p~l~D~~~~~~~~~~v~~~P~~~liD~~G~i~y~G~idd~--~~~~----~~~~~~~  148 (187)
T d2cvba1          76 EKYPEDAPEKMAAFAEEHG-IFFPYLLDETQEVAKAYRALRTPEVFLFDERRLLRYHGRVNDN--PKDP----SKVQSHD  148 (187)
T ss_dssp             TTCGGGSHHHHHHHHHHHT-CCSCEEECSSSHHHHHTTCCEESEEEEECTTCBEEEEECSSSC--TTCG----GGCCCCH
T ss_pred             ccccccchHHHHHHHHHhC-CcceeeechhhhhcccccccceeeEEEEcCCCeEEEEeeecCC--CCCC----CCCCHHH
Confidence                 24567888888776 7899999999999999999999999999999999998766552  2211    1122257


Q ss_pred             HHHHHHHHHhcCCCCcccc
Q 014225          353 LEKQMEEEAKNLPRSEFHI  371 (428)
Q Consensus       353 L~~~l~~~~~~~~~~~~~~  371 (428)
                      |.++|++++++.+.....+
T Consensus       149 L~~Ai~~ll~g~~~~~~~t  167 (187)
T d2cvba1         149 LEAAIEALLRGEEPPLKEA  167 (187)
T ss_dssp             HHHHHHHHHTTCCCCSSCC
T ss_pred             HHHHHHHHHcCCCCCcccc
Confidence            8999999999886644443

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.93  E-value=2e-25  Score=189.27  Aligned_cols=138  Identities=35%  Similarity=0.594  Sum_probs=120.0

Q ss_pred             ccccccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHH
Q 014225           36 SLLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNY  114 (428)
Q Consensus        36 ~~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~  114 (428)
                      |-++..+|+| +...+|.+++|++++||+|+|+|||+||++|+.++|.|+++++++++. .++++++|+.|.+.+.++++
T Consensus         2 ~~~~k~~P~~~~~~~~~~~v~l~~~~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~-~~~~vi~is~d~~~~~~~~~   80 (144)
T d1o73a_           2 SGLAKYLPGATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVA-KNFEVVLISWDENESDFHDY   80 (144)
T ss_dssp             CGGGGTSCTTCCBBCTTSCBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCSSHHHHHHH
T ss_pred             CCcccCCCCceeeccCCCEEeHHHhCCCEEEEEeChhhCccchhhhHHHHHHHHHHhhc-cCeEEEEEecchhHHHHHHH
Confidence            4568899999 777788889999999999999999999999999999999999999654 24999999999999999999


Q ss_pred             HhcCCCceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCC-CCcccccchh-hhhhcccCcccc
Q 014225          115 RACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDK-DDATLHDGVE-LIYKYGIRAFPF  177 (428)
Q Consensus       115 ~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~d-G~i~~~~~~~-~i~~~g~~~~p~  177 (428)
                      +++++|..+++........+.+.|++.++|+++|||+   + |+++..++.. ..+++....|||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~l~~~y~v~~~Pt~~lID~---~~G~Ii~~~~~~~~~~d~~~~~fpw  142 (144)
T d1o73a_          81 YGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINA---DTGAIIGTQARTRVIEDPDGANFPW  142 (144)
T ss_dssp             HTTCSSEECCTTCHHHHHHHHHHHTCCSSSEEEEEET---TTCCEEESCHHHHHHHCTTCTTTTC
T ss_pred             HHhccccceeeeccchHHHHHHHcCCCcCCEEEEEEC---CCCEEEeecchhhhhhCcccccCCC
Confidence            9999998888866665578999999999999999999   8 8999888754 344555666776

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.92  E-value=6.2e-25  Score=186.09  Aligned_cols=128  Identities=33%  Similarity=0.661  Sum_probs=114.3

Q ss_pred             cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceecc
Q 014225           46 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPY  125 (428)
Q Consensus        46 l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~  125 (428)
                      +.+.+|.++++++++||+|+|+|||+||+||+.++|.|+++++++++++ ++++++|+.|.+.+.+++++++++|..+++
T Consensus        13 ~l~~~~~~v~ls~l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~-~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~   91 (144)
T d1i5ga_          13 VLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKK-NFEVMLISWDESAEDFKDYYAKMPWLALPF   91 (144)
T ss_dssp             EEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTT-TEEEEEEECCSSHHHHHHHHTTCSSEECCT
T ss_pred             hccCCCCEeeHHHcCCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhcc-CcEEEEEeccccHHHHHHHHHhCCCCceee
Confidence            5677899999999999999999999999999999999999999998753 599999999999999999999999999998


Q ss_pred             CChHHHHHHHhhcCCCCCceEEEEcCCCCC-CCcccccchhhhhh-cccCcccc
Q 014225          126 SDLETKKALNRKFDIEGIPCLVVLQPYDDK-DDATLHDGVELIYK-YGIRAFPF  177 (428)
Q Consensus       126 ~d~~~~~~l~~~~~v~~~P~~~lid~~~~d-G~i~~~~~~~~i~~-~g~~~~p~  177 (428)
                      .+......+.+.|++.++|+++|||+   + |+|+..+++..+.. .....|||
T Consensus        92 ~d~~~~~~l~~~y~v~~iPt~~lid~---~~G~vi~~~g~~~v~~d~~~~~fpw  142 (144)
T d1i5ga_          92 EDRKGMEFLTTGFDVKSIPTLVGVEA---DSGNIITTQARTMVVKDPEAKDFPW  142 (144)
T ss_dssp             TCHHHHHHHHHHTTCCSSSEEEEEET---TTCCEEESCHHHHHHHCTTCTTTTC
T ss_pred             EChHHHHHHHHHCCCCCcCEEEEEeC---CCCEEEeehhHHHHhhCcccccCCC
Confidence            77776567999999999999999998   7 89999888777654 44455776

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.91  E-value=2.4e-24  Score=182.54  Aligned_cols=124  Identities=44%  Similarity=0.775  Sum_probs=111.3

Q ss_pred             hhccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC
Q 014225          201 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD  279 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~  279 (428)
                      -+++.+|+++. ..+|. ++++++++||+|+|+|||+||++|++++|.|.+++++|...        .++++++|+.|.+
T Consensus         3 ~~~k~~P~~~~~~~~~~-~v~l~~~~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~--------~~~~vi~is~d~~   73 (144)
T d1o73a_           3 GLAKYLPGATNLLSKSG-EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVA--------KNFEVVLISWDEN   73 (144)
T ss_dssp             GGGGTSCTTCCBBCTTS-CBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT--------TTEEEEEEECCSS
T ss_pred             CcccCCCCceeeccCCC-EEeHHHhCCCEEEEEeChhhCccchhhhHHHHHHHHHHhhc--------cCeEEEEEecchh
Confidence            36889999999 88888 89999999999999999999999999999999999999643        3799999999999


Q ss_pred             HHHHHHHHhcCCccccccCCc-chhHHHHhcCcCccceEEEECCC-CcEEeccccc
Q 014225          280 QTSFESYFGTMPWLALPFGDP-TIKELTKYFDVQGIPCLVIIGPE-GKTVTKQGRN  333 (428)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~v~~~P~~~lid~~-G~i~~~~~~~  333 (428)
                      .+.+.+++.+.+|..+++..+ ....+.+.|+|.++|+++|||++ |+|+.++++.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~v~~~Pt~~lID~~~G~Ii~~~~~~  129 (144)
T d1o73a_          74 ESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQART  129 (144)
T ss_dssp             HHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTCCSSSEEEEEETTTCCEEESCHHH
T ss_pred             HHHHHHHHHhccccceeeeccchHHHHHHHcCCCcCCEEEEEECCCCEEEeecchh
Confidence            999999999999988887654 44578999999999999999997 8999987653

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.91  E-value=4.4e-24  Score=179.29  Aligned_cols=119  Identities=25%  Similarity=0.485  Sum_probs=111.2

Q ss_pred             ccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHH
Q 014225          203 TNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQT  281 (428)
Q Consensus       203 g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~  281 (428)
                      |.++|+|++ +.+|+ .+++++++||+++|+||++||++|..+++.++++++++.+.         ++.+++|+++.+..
T Consensus         2 G~~~P~f~l~~~~G~-~~~l~~~~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~---------~~~~v~i~~~~~~~   71 (137)
T d1st9a_           2 GSDAPNFVLEDTNGK-RIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQ---------GVEIVAVNVGESKI   71 (137)
T ss_dssp             CEECCCCEEECTTSC-EEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG---------TEEEEEEEESCCHH
T ss_pred             cCcCCCeEEECCCcC-EEeHHHhCCCEEEEEEeeccccceeeccccccccccccccc---------ccccccccccchhh
Confidence            789999999 99999 99999999999999999999999999999999999999877         89999999998999


Q ss_pred             HHHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEecccc
Q 014225          282 SFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~  332 (428)
                      ++++++.+++ +++|+..|....+++.|++.++|+++|||++|+++++..+
T Consensus        72 ~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~G  121 (137)
T d1st9a_          72 AVHNFMKSYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTG  121 (137)
T ss_dssp             HHHHHHHHTT-CCSCEEEETTSHHHHHTTCCSSCEEEEECTTSEEEEEEES
T ss_pred             hHHHHHHHcC-CCccccccccchhhhhhhccccceEEEECCCCEEEEEEEC
Confidence            9999999877 6688888888899999999999999999999999998543

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.90  E-value=8.3e-24  Score=179.05  Aligned_cols=138  Identities=33%  Similarity=0.622  Sum_probs=121.1

Q ss_pred             ccccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHh
Q 014225           38 LASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRA  116 (428)
Q Consensus        38 ~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~  116 (428)
                      ++..+|+| +.+.+|+++++++++||+|+|+||++||++|+.++|.|.+++++|++.. ++.+++|+.|.+.+.+..++.
T Consensus         2 ~~k~~P~~~~~~~~g~~v~l~~l~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~-~~~~v~is~d~~~~~~~~~~~   80 (144)
T d1o8xa_           2 LDKYLPGIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESK-NFEVVFCTWDEEEDGFAGYFA   80 (144)
T ss_dssp             GGGTSTTCCEEEETTEEEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTT-TEEEEEEECCCSHHHHHHHHT
T ss_pred             CCCCCCCcEeEcCCCCEEeHHHhCCCEEEEEeccccccccccccchhHHhhhhccccc-ccccccccccccHHHHHHHHh
Confidence            57789999 9999999999999999999999999999999999999999999997753 599999999999999999999


Q ss_pred             cCCCceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCC-CCcccccchhhh-hhcccCccccch
Q 014225          117 CMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDK-DDATLHDGVELI-YKYGIRAFPFTK  179 (428)
Q Consensus       117 ~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~d-G~i~~~~~~~~i-~~~g~~~~p~t~  179 (428)
                      ...|..+++...+....+.+.|++.++|+++|||+   + |+|+..+++..+ .+.....+||..
T Consensus        81 ~~~~~~~~~~~~d~~~~l~~~y~v~~~Pt~~liD~---~~G~Vi~~~~~~~~~~d~~~~~~~w~~  142 (144)
T d1o8xa_          81 KMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDA---DSGDVVTTRARATLVKDPEGEQFPWKD  142 (144)
T ss_dssp             TCSSEECCGGGHHHHHHHHHHTTCCSSSEEEEEET---TTCCEEESCHHHHHTTCTTCTTTTCCC
T ss_pred             hccccceeeecccchhhHHHHcCCCcCCEEEEEeC---CCCEEEEEechhhhhhCcccccCCCCC
Confidence            99988888766566578999999999999999998   7 899988876554 445556677753

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.90  E-value=3.7e-24  Score=179.08  Aligned_cols=115  Identities=17%  Similarity=0.245  Sum_probs=105.2

Q ss_pred             ccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHH
Q 014225          203 TNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQT  281 (428)
Q Consensus       203 g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~  281 (428)
                      |+..++|++ +.+|+ .+++++++||++||+||++|||+|+.++|.|++++++++           ++.+++|+.+.+.+
T Consensus         1 ~d~~~~f~~~~~~G~-~~~l~~~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~-----------~v~~v~v~~~~~~~   68 (134)
T d1lu4a_           1 ADERLQFTATTLSGA-PFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP-----------AVTFVGIATRADVG   68 (134)
T ss_dssp             CGGGGCCEEEBTTSC-EEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEECSSCHH
T ss_pred             CCCCCcceeECCCCC-EEcHHHhCCCEEEEEEeecccCCceecchhHHHHhhhhc-----------cccccccccccchh
Confidence            467789999 99999 999999999999999999999999999999999987653           67999999999999


Q ss_pred             HHHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEecc
Q 014225          282 SFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      .+++|.++++ +.+|+..|....+++.|++.++|+++|||++|+++...
T Consensus        69 ~~~~~~~~~~-~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~v~  116 (134)
T d1lu4a_          69 AMQSFVSKYN-LNFTNLNDADGVIWARYNVPWQPAFVFYRADGTSTFVN  116 (134)
T ss_dssp             HHHHHHHHHT-CCSEEEECTTSHHHHHTTCCSSSEEEEECTTSCEEEEC
T ss_pred             hhhhhhhhhc-cccceeeCchHHHHHHcCCCcCCEEEEEeCCCeEEEEe
Confidence            9999999887 68888888889999999999999999999999997653

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.90  E-value=1.6e-23  Score=177.32  Aligned_cols=115  Identities=40%  Similarity=0.799  Sum_probs=103.3

Q ss_pred             CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCC
Q 014225          212 GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMP  291 (428)
Q Consensus       212 ~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~  291 (428)
                      +.+|. .+++++++||+|+|+|||+||++|+.++|.|.+++++++++        .+++|++|+.|.+.+++++++.+++
T Consensus        15 ~~~~~-~v~ls~l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~--------~~~~vi~vs~D~~~~~~~~~~~~~~   85 (144)
T d1i5ga_          15 KGAAA-DIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK--------KNFEVMLISWDESAEDFKDYYAKMP   85 (144)
T ss_dssp             ETTEE-EEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT--------TTEEEEEEECCSSHHHHHHHHTTCS
T ss_pred             cCCCC-EeeHHHcCCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhc--------cCcEEEEEeccccHHHHHHHHHhCC
Confidence            77788 89999999999999999999999999999999999999764        3799999999999999999999999


Q ss_pred             ccccccCCcc-hhHHHHhcCcCccceEEEECCC-CcEEeccccchh
Q 014225          292 WLALPFGDPT-IKELTKYFDVQGIPCLVIIGPE-GKTVTKQGRNLI  335 (428)
Q Consensus       292 ~~~~~~~~d~-~~~~~~~~~v~~~P~~~lid~~-G~i~~~~~~~~~  335 (428)
                      |..+++.... ...+.+.|+|.++|+++|||++ |+|+..+++..+
T Consensus        86 ~~~~~~~d~~~~~~l~~~y~v~~iPt~~lid~~~G~vi~~~g~~~v  131 (144)
T d1i5ga_          86 WLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMV  131 (144)
T ss_dssp             SEECCTTCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHH
T ss_pred             CCceeeEChHHHHHHHHHCCCCCcCEEEEEeCCCCEEEeehhHHHH
Confidence            9888876543 3468899999999999999996 999998877665

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.89  E-value=2e-23  Score=176.64  Aligned_cols=125  Identities=38%  Similarity=0.759  Sum_probs=112.9

Q ss_pred             hccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCH
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ  280 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~  280 (428)
                      +++.+|+|++ +.+|. ++++++++||+|+|+||++||++|+.++|.|.+++++|...        .++.+++|+.|.+.
T Consensus         2 ~~k~~P~~~~~~~~g~-~v~l~~l~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~--------~~~~~v~is~d~~~   72 (144)
T d1o8xa_           2 LDKYLPGIEKLRRGDG-EVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHES--------KNFEVVFCTWDEEE   72 (144)
T ss_dssp             GGGTSTTCCEEEETTE-EEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT--------TTEEEEEEECCCSH
T ss_pred             CCCCCCCcEeEcCCCC-EEeHHHhCCCEEEEEeccccccccccccchhHHhhhhcccc--------cccccccccccccH
Confidence            5788999999 99999 99999999999999999999999999999999999999754        37999999999999


Q ss_pred             HHHHHHHhcCCccccccCC-cchhHHHHhcCcCccceEEEECCC-CcEEeccccchh
Q 014225          281 TSFESYFGTMPWLALPFGD-PTIKELTKYFDVQGIPCLVIIGPE-GKTVTKQGRNLI  335 (428)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~v~~~P~~~lid~~-G~i~~~~~~~~~  335 (428)
                      +.+..++...+|..+++.. |....+.+.|+|.++|+++|||++ |+|+..+++..+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~v~~~Pt~~liD~~~G~Vi~~~~~~~~  129 (144)
T d1o8xa_          73 DGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATL  129 (144)
T ss_dssp             HHHHHHHTTCSSEECCGGGHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHH
T ss_pred             HHHHHHHhhccccceeeecccchhhHHHHcCCCcCCEEEEEeCCCCEEEEEechhhh
Confidence            9999999999998888754 456789999999999999999998 899988766544

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.89  E-value=4.4e-23  Score=172.36  Aligned_cols=113  Identities=19%  Similarity=0.269  Sum_probs=103.8

Q ss_pred             CCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHH
Q 014225          207 RGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFES  285 (428)
Q Consensus       207 p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~  285 (428)
                      .+|++ +.+|+ .+++++++||++||+||++|||+|++++|.|.+++++++           ++.+++|+.+...+..++
T Consensus         6 ~df~~~~~~G~-~~~l~~~~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~-----------~~~~v~v~~~d~~~~~~~   73 (134)
T d1zzoa1           6 LQFSAKTLDGH-DFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP-----------EVTFVGVAGLDQVPAMQE   73 (134)
T ss_dssp             GCCEEEBTTSC-EEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEECSSCHHHHHH
T ss_pred             cceeEEcCCCC-EEeHHHhCCCEEEEEecccccCcccccchhhHHHHhhhc-----------ccccccccccccchhHHH
Confidence            47999 99999 999999999999999999999999999999999999875           357888888888999999


Q ss_pred             HHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEeccc
Q 014225          286 YFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       286 ~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~  331 (428)
                      ++..+++..+|...|....+.+.|++.++|++||||++|+|.+..|
T Consensus        74 ~~~~~~~~~~~~l~D~~~~~~~~~~v~~~P~~~iiD~~G~i~~~~g  119 (134)
T d1zzoa1          74 FVNKYPVKTFTQLADTDGSVWANFGVTQQPAYAFVDPHGNVDVVRG  119 (134)
T ss_dssp             HHHHTTCTTSEEEECTTCHHHHHTTCCSSSEEEEECTTCCEEEEES
T ss_pred             HHHhcCCcceeEEeeccchHHHhcCCCccCeEEEECCCCeEEEEEC
Confidence            9999998889999888899999999999999999999999987643

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.87  E-value=1.5e-22  Score=178.81  Aligned_cols=119  Identities=17%  Similarity=0.211  Sum_probs=101.6

Q ss_pred             ccccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEec-------CCChH
Q 014225           38 LASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS-------DEDLN  109 (428)
Q Consensus        38 ~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~-------D~~~~  109 (428)
                      +|+++||| |.+.+|+.++|++++||+|+|+|||+|||+|+.++|.|++++++|+++   +.+++|+.       +...+
T Consensus         8 vG~~aPdF~l~d~~G~~~~Lsd~kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~---v~~v~i~snd~~~~~~~~~e   84 (187)
T d2cvba1           8 LESPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK---VAFVGINANDYEKYPEDAPE   84 (187)
T ss_dssp             TTCBCCCCEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT---EEEEEEECCCTTTCGGGSHH
T ss_pred             CCCccCccEeecCCCCEEEHHHhCCCeEEEEEeCCCCccchhhhhhhhhhhhhcccc---ceeeeeeccccccccccchH
Confidence            69999999 999999999999999999999999999999999999999999999864   88888874       23457


Q ss_pred             HHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccccch
Q 014225          110 AFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGV  164 (428)
Q Consensus       110 ~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~~~~  164 (428)
                      .++++.++.++.+....|.+  +.+++.|++.++|+++|||+   +|+++++..+
T Consensus        85 ~~~~~~~~~~~~~p~l~D~~--~~~~~~~~v~~~P~~~liD~---~G~i~y~G~i  134 (187)
T d2cvba1          85 KMAAFAEEHGIFFPYLLDET--QEVAKAYRALRTPEVFLFDE---RRLLRYHGRV  134 (187)
T ss_dssp             HHHHHHHHHTCCSCEEECSS--SHHHHHTTCCEESEEEEECT---TCBEEEEECS
T ss_pred             HHHHHHHHhCCcceeeechh--hhhcccccccceeeEEEEcC---CCeEEEEeee
Confidence            78888887765322222444  78999999999999999999   9999987433

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.87  E-value=2.2e-22  Score=170.29  Aligned_cols=116  Identities=19%  Similarity=0.258  Sum_probs=100.2

Q ss_pred             cCCCCccc-CCCC--------CceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEE
Q 014225          204 NHDRGYLL-GHPP--------DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV  274 (428)
Q Consensus       204 ~~~p~f~l-~~~g--------~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~i  274 (428)
                      +++|+|++ ..+|        . .+++++++||++||+||++||++|+.++|.+.++++.+            ++.+++|
T Consensus         1 ~paP~~~lp~~~g~~~~~~~~~-~~~~~~~kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~------------~~~~~~i   67 (144)
T d1knga_           1 RPAPQTALPPLEGLQADNVQVP-GLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKDK------------RFQLVGI   67 (144)
T ss_dssp             CBCCCCCBCCCTTCEETTEECC-CBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTCT------------TSEEEEE
T ss_pred             CCCCCCCCCCCCCccccCCcCC-ccCHHHhCCCEEEEEeeccccccccccCchhhhhhhcc------------CceeEEE
Confidence            36778877 6666        5 68899999999999999999999999999998876543            5789999


Q ss_pred             EcCCCHHHHHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEecccc
Q 014225          275 STDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       275 s~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~  332 (428)
                      +.+....+.+++...+++...++..|....+.+.|++.++|+++|||++|+|+++..+
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~G  125 (144)
T d1knga_          68 NYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPETFVVGREGTIVYKLVG  125 (144)
T ss_dssp             EESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSCEEEEECTTSBEEEEEES
T ss_pred             EeeechHHHHHHHHHcCCccccccccccchhhhhcCccccceEEEEcCCCeEEEEEeC
Confidence            9999999999999988866666777888999999999999999999999999998543

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.86  E-value=7.4e-22  Score=166.78  Aligned_cols=119  Identities=17%  Similarity=0.167  Sum_probs=105.4

Q ss_pred             hccCCCCccc-C--CCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC
Q 014225          202 LTNHDRGYLL-G--HPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR  278 (428)
Q Consensus       202 ~g~~~p~f~l-~--~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~  278 (428)
                      +|.++|+|++ +  .+|+ .++++.+.||+++|+||++|||+|..++|.|+++++++++.          +.+++|+++.
T Consensus         3 ~g~~aP~~~~~~~~~ng~-~~~~~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~----------~~~i~v~~~~   71 (143)
T d2b5xa1           3 LRQPMPELTGEKAWLNGE-VTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ----------LNVVAVHMPR   71 (143)
T ss_dssp             TTCBCCCCCCCSEEESCC-CCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT----------SEEEEEECCC
T ss_pred             CCCcCCCCcCCccCcCCe-EecHHHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhcc----------ccceeEEeec
Confidence            6899999997 5  4888 89999999999999999999999999999999999999754          7899998753


Q ss_pred             -----CHHHHHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEecccc
Q 014225          279 -----DQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       279 -----~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~  332 (428)
                           +.+.++++..+++ +++|+..|....+.+.|++.++|++||||++|+|++++.|
T Consensus        72 ~~~~~~~~~~~~~~~~~~-~~~p~~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~G  129 (143)
T d2b5xa1          72 SEDDLDPGKIKETAAEHD-ITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAG  129 (143)
T ss_dssp             STTTSSHHHHHHHHHHTT-CCSCEEECSSCHHHHHTCCCCSSEEEEECTTCBEEEEEES
T ss_pred             cccccchhhhhhHHHhhc-cCccccccCccchHHHcCCCcCCEEEEECCCCEEEEEEEC
Confidence                 4567788888887 5888888888999999999999999999999999988543

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.86  E-value=5.1e-22  Score=165.89  Aligned_cols=113  Identities=17%  Similarity=0.306  Sum_probs=98.7

Q ss_pred             cccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhc
Q 014225           39 ASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRAC  117 (428)
Q Consensus        39 g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~  117 (428)
                      |+.++|| +.+.+|+++++++++||+++|+||++|||+|+.++|.|++++++++  +  +.+++|+.+.+.+.+++|+++
T Consensus         1 ~d~~~~f~~~~~~G~~~~l~~~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~--~--v~~v~v~~~~~~~~~~~~~~~   76 (134)
T d1lu4a_           1 ADERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP--A--VTFVGIATRADVGAMQSFVSK   76 (134)
T ss_dssp             CGGGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--T--SEEEEEECSSCHHHHHHHHHH
T ss_pred             CCCCCcceeECCCCCEEcHHHhCCCEEEEEEeecccCCceecchhHHHHhhhhc--c--ccccccccccchhhhhhhhhh
Confidence            5789999 9999999999999999999999999999999999999999998753  3  889999999999999999998


Q ss_pred             CCCceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCccc
Q 014225          118 MPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATL  160 (428)
Q Consensus       118 ~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~  160 (428)
                      ++.....+.|.+  ..+++.|++.++|++++||+   +|+++.
T Consensus        77 ~~~~~p~~~d~~--~~~~~~~~v~~~P~~~lid~---~G~i~~  114 (134)
T d1lu4a_          77 YNLNFTNLNDAD--GVIWARYNVPWQPAFVFYRA---DGTSTF  114 (134)
T ss_dssp             HTCCSEEEECTT--SHHHHHTTCCSSSEEEEECT---TSCEEE
T ss_pred             hccccceeeCch--HHHHHHcCCCcCCEEEEEeC---CCeEEE
Confidence            775322222443  68999999999999999999   998764

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.85  E-value=3.8e-22  Score=168.45  Aligned_cols=114  Identities=16%  Similarity=0.239  Sum_probs=102.4

Q ss_pred             ccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC-----CHHH
Q 014225          209 YLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-----DQTS  282 (428)
Q Consensus       209 f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~-----~~~~  282 (428)
                      .+| +.+|+ .+++++++||+++|+|||+|||+|+.++|.|.+++++++..         ++.+++|+.+.     ...+
T Consensus         6 ~~l~~~~~~-~~~l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~---------~~~~i~v~~~~~~~~~~~~~   75 (143)
T d2fy6a1           6 STLKTADNR-PASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFS---------SANLITVASPGFLHEKKDGD   75 (143)
T ss_dssp             HTCEETTSC-BGGGGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGT---------TSEEEEEECTTSTTCCCTTH
T ss_pred             ceeECCCCC-EeeHHHhCCCEEEEEEECCCCccccccCcchhhhhhhhccC---------CcEEEEEeeeecccccchhh
Confidence            456 88999 99999999999999999999999999999999999999876         79999999753     3456


Q ss_pred             HHHHHhcCCccccccCCcchhHHHHhcCcCccceEEEECCCCcEEecccc
Q 014225          283 FESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       283 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~  332 (428)
                      ..+++...++..+|+..|....+++.|++.++|+++|||++|+|+.+..+
T Consensus        76 ~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~G  125 (143)
T d2fy6a1          76 FQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVKG  125 (143)
T ss_dssp             HHHHHTTSCCTTSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEEES
T ss_pred             hhhhhhhcCCcccccccccchHHHHHcCCCccCEEEEECCCCEEEEEEEC
Confidence            78888888889999999999999999999999999999999999988543

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.85  E-value=1.2e-21  Score=164.10  Aligned_cols=116  Identities=22%  Similarity=0.412  Sum_probs=103.4

Q ss_pred             cccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhc
Q 014225           39 ASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRAC  117 (428)
Q Consensus        39 g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~  117 (428)
                      |.++|+| +.+.+|+++++++++||+++|+||++||++|..++|.++++++++.+.+  +.+++|+.|.+.+.+++++++
T Consensus         2 G~~~P~f~l~~~~G~~~~l~~~~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~v~i~~~~~~~~~~~~~~~   79 (137)
T d1st9a_           2 GSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG--VEIVAVNVGESKIAVHNFMKS   79 (137)
T ss_dssp             CEECCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT--EEEEEEEESCCHHHHHHHHHH
T ss_pred             cCcCCCeEEECCCcCEEeHHHhCCCEEEEEEeeccccceeecccccccccccccccc--cccccccccchhhhHHHHHHH
Confidence            7889999 9999999999999999999999999999999999999999999999987  999999999999999999998


Q ss_pred             CCCceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          118 MPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       118 ~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +++......|.+  ..+++.|++.++|+++|||+   +|+++.+
T Consensus        80 ~~~~~~~~~d~~--~~~~~~~~v~~~P~~~liD~---~G~i~~~  118 (137)
T d1st9a_          80 YGVNFPVVLDTD--RQVLDAYDVSPLPTTFLINP---EGKVVKV  118 (137)
T ss_dssp             TTCCSCEEEETT--SHHHHHTTCCSSCEEEEECT---TSEEEEE
T ss_pred             cCCCcccccccc--chhhhhhhccccceEEEECC---CCEEEEE
Confidence            764311111332  68999999999999999999   9998865

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.85  E-value=3.4e-21  Score=168.47  Aligned_cols=119  Identities=23%  Similarity=0.380  Sum_probs=102.7

Q ss_pred             ccCCCCccc-CCCCCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC-CH
Q 014225          203 TNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-DQ  280 (428)
Q Consensus       203 g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~-~~  280 (428)
                      +.++|+|++ +.+|+ .+++++++||+|||+||++||++|..+.+.++++++++...         ++.|++|++|. +.
T Consensus        33 ~~~~Pdf~l~d~~G~-~v~L~~~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~---------~~~vv~vs~d~~~~  102 (176)
T d1jfua_          33 PLKLPDLAFEDADGK-PKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGP---------NFEVVAINIDTRDP  102 (176)
T ss_dssp             CCBCCCCEEECTTSC-EEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBT---------TEEEEEEECCCSCT
T ss_pred             CCcCCCeEEECCCcC-EEeHHHhCCCEEEEEeccCcccchHHHHHhhhhcccccccc---------ccccccccccccch
Confidence            456999999 99999 99999999999999999999999999999999999999866         79999999984 57


Q ss_pred             HHHHHHHhcCCccccccCCcchhH----HHHhcCcCccceEEEECCCCcEEeccc
Q 014225          281 TSFESYFGTMPWLALPFGDPTIKE----LTKYFDVQGIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~v~~~P~~~lid~~G~i~~~~~  331 (428)
                      +.+++|+++.++..+++..|....    +...|++.++|+++|||++|+|+.++.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~v~~~P~~~lID~~G~I~~~~~  157 (176)
T d1jfua_         103 EKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIA  157 (176)
T ss_dssp             THHHHHHHHTTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEEEE
T ss_pred             hhhhhhHhhhCCcceeeeecchhHHHHHHhhhccCCCCCeEEEEcCCCEEEEEEE
Confidence            789999998886555565554443    455678899999999999999998753

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=1.2e-21  Score=164.09  Aligned_cols=107  Identities=19%  Similarity=0.116  Sum_probs=94.8

Q ss_pred             CCCCCceeccccc-CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcC
Q 014225          212 GHPPDEKVPVSSL-VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTM  290 (428)
Q Consensus       212 ~~~g~~~v~l~~~-~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~  290 (428)
                      |.+|+ .++.+++ +||+|||+|||+||++|++++|.|+++++    .         ++.+++++.+.+......++.+.
T Consensus         6 d~~g~-~~~~~~l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~----~---------~~~vi~i~~~~~~~~~~~~~~~~   71 (136)
T d1z5ye1           6 DNPGQ-FYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSA----Q---------GIRVVGMNYKDDRQKAISWLKEL   71 (136)
T ss_dssp             SSTTC-EECHHHHHSSSCEEEEEECTTCHHHHHHHHHHHHHHH----T---------TCCEEEEEESCCHHHHHHHHHHH
T ss_pred             cCCCc-EecHHHHcCCCEEEEEEEcCcCCCcCccccchhhhhh----h---------hhhhcccccccchhhhHHHHHHc
Confidence            67788 9999998 89999999999999999999999988743    3         58899999999999999999888


Q ss_pred             CccccccCCcchhHHHHhcCcCccceEEEECCCCcEEecccc
Q 014225          291 PWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       291 ~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~  332 (428)
                      ++..+++..|.+..+.+.|++.++|+++|||++|+|+.++.+
T Consensus        72 ~~~~~~~~~d~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~G  113 (136)
T d1z5ye1          72 GNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAG  113 (136)
T ss_dssp             CCCCSEEEEESSCHHHHHHTCCSBSEEEEECTTSCEEEEEES
T ss_pred             CCccceeecccchhHHHhcccCCcceEEEEcCCCEEEEEEEc
Confidence            877777777888899999999999999999999999988544

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.84  E-value=1.5e-21  Score=168.04  Aligned_cols=141  Identities=18%  Similarity=0.270  Sum_probs=118.2

Q ss_pred             hccCCCCccc-CCCCCceeccccc--CCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSL--VGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD  277 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~--~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d  277 (428)
                      +|+++|+|++ +.+|+ .++++++  +||++||+|| ++|||+|..+++.++++++++++.         ++.+++|+.|
T Consensus         4 vG~~aPdF~L~~~~G~-~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~---------~~~vv~is~d   73 (160)
T d2cx4a1           4 LGEKAPDFTLPNQDFE-PVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKA---------NAEVLAISVD   73 (160)
T ss_dssp             TTSBCCCCEECCTTSC-CEEHHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTT---------CCEEEEEESS
T ss_pred             CCCCCcCeEeECCCCC-EEehHHHhhCCCEEEEEecccccCCchhhhhhhhhccccccccc---------cccccccccc
Confidence            6999999999 99999 9999997  7999999999 899999999999999999999876         7999999988


Q ss_pred             CCHHHHHHHHhcCCccccccCCcchhHHHHhcCc----------CccceEEEECCCCcEEeccccchhhcccccCCCCCh
Q 014225          278 RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDV----------QGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTE  347 (428)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v----------~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~  347 (428)
                       +.+..+++....+ +.+++..|.+..+++.||+          ...|++||||++|+|++++....         +...
T Consensus        74 -~~~~~~~~~~~~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~flId~~G~I~~~~~~~~---------~~~~  142 (160)
T d2cx4a1          74 -SPWCLKKFKDENR-LAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDN---------PLNE  142 (160)
T ss_dssp             -CHHHHHHHHHHHT-CSSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSS---------TTCC
T ss_pred             -chhhhhhhcccce-eeEEEeecCCcchHHHcCccccccccccccceeeEEEEcCCCEEEEEEEeCC---------CCCC
Confidence             6667777776654 6778888888999999998          34689999999999999854321         3445


Q ss_pred             HHHHHHHHHHHHHHhc
Q 014225          348 AKLEFLEKQMEEEAKN  363 (428)
Q Consensus       348 ~~~~~L~~~l~~~~~~  363 (428)
                      ..++++.+++++++++
T Consensus       143 ~~~~eil~~l~~l~~e  158 (160)
T d2cx4a1         143 PDYDEVVREANKIAGE  158 (160)
T ss_dssp             CCHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHccc
Confidence            5677888888887653

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.83  E-value=3.2e-21  Score=160.83  Aligned_cols=112  Identities=18%  Similarity=0.310  Sum_probs=96.6

Q ss_pred             cccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCC
Q 014225           41 KDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMP  119 (428)
Q Consensus        41 ~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~  119 (428)
                      ...|| +.+.+|+++++++++||+++|+|||+||++|++++|.|+++++++++    +.+++|+.++.....++++++++
T Consensus         4 ~~~df~~~~~~G~~~~l~~~~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~----~~~v~v~~~d~~~~~~~~~~~~~   79 (134)
T d1zzoa1           4 AQLQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE----VTFVGVAGLDQVPAMQEFVNKYP   79 (134)
T ss_dssp             GGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEECSSCHHHHHHHHHHTT
T ss_pred             CCcceeEEcCCCCEEeHHHhCCCEEEEEecccccCcccccchhhHHHHhhhcc----cccccccccccchhHHHHHHhcC
Confidence            35679 99999999999999999999999999999999999999999999865    55788888888888999999887


Q ss_pred             Cceecc-CChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          120 WLAVPY-SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       120 ~~~~~~-~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +..++. .|.+  ..+.+.|++.++|+++|||+   +|++...
T Consensus        80 ~~~~~~l~D~~--~~~~~~~~v~~~P~~~iiD~---~G~i~~~  117 (134)
T d1zzoa1          80 VKTFTQLADTD--GSVWANFGVTQQPAYAFVDP---HGNVDVV  117 (134)
T ss_dssp             CTTSEEEECTT--CHHHHHTTCCSSSEEEEECT---TCCEEEE
T ss_pred             CcceeEEeecc--chHHHhcCCCccCeEEEECC---CCeEEEE
Confidence            654332 2433  68999999999999999999   9987643

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=99.82  E-value=4.2e-20  Score=159.61  Aligned_cols=119  Identities=19%  Similarity=0.243  Sum_probs=102.9

Q ss_pred             hhccCCCCccc-CCC----CCceecccccCCcEEEEEEecc-CChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEE
Q 014225          201 LLTNHDRGYLL-GHP----PDEKVPVSSLVGKTVGLYFSAR-WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV  274 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~----g~~~v~l~~~~gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~i  274 (428)
                      ++|+++|+|++ +..    +. ++++++++||++||+||.. |||+|..+++.|++++++|++.         +++|++|
T Consensus         2 lvG~~aP~F~l~~~~~g~~~~-~vslsd~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~---------g~~vv~I   71 (166)
T d1we0a1           2 LIGTEVQPFRAQAFQSGKDFF-EVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKL---------GVEVYSV   71 (166)
T ss_dssp             CTTCBCCCCEEEEECSSSCCE-EEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHT---------TEEEEEE
T ss_pred             CCCCcCCCCEEeeecCCccee-EeeHHHhCCCeEEEEEecccCCcHHHHHHHHHHHHHHhhccc---------ceEEEec
Confidence            68999999999 433    34 6999999999999999965 9999999999999999999987         8999999


Q ss_pred             EcCCCHHHHHHHHhcCC---ccccccCCcchhHHHHhcCcC------ccceEEEECCCCcEEecc
Q 014225          275 STDRDQTSFESYFGTMP---WLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       275 s~d~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~  330 (428)
                      |+| +....++|.++..   .++||++.|....+++.||+.      ..|++||||++|+|++..
T Consensus        72 S~D-~~~~~~~~~~~~~~~~~~~fpll~D~~~~v~~~ygv~~~~~~~~~r~tfvID~~G~I~~~~  135 (166)
T d1we0a1          72 STD-THFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIE  135 (166)
T ss_dssp             ESS-CHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred             ccc-cHHHHHHHhhhhhhhcccccccccCcccHHHHHhCCCccccCcccceEEEECCCCcEEEEE
Confidence            999 5666666666542   378999999999999999984      568899999999998874

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.81  E-value=2.1e-19  Score=156.85  Aligned_cols=119  Identities=22%  Similarity=0.304  Sum_probs=100.3

Q ss_pred             ccccccCc-cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCC-ChHHHHHHH
Q 014225           38 LASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-DLNAFNNYR  115 (428)
Q Consensus        38 ~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~-~~~~~~~~~  115 (428)
                      .+.++||| |.+.+|++++|++++||+|+|+||++||++|+.+++.++++++++++.+  +.+++|++|. +.+.+++|+
T Consensus        32 ~~~~~Pdf~l~d~~G~~v~L~~~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~--~~vv~vs~d~~~~~~~~~~~  109 (176)
T d1jfua_          32 APLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPN--FEVVAINIDTRDPEKPKTFL  109 (176)
T ss_dssp             SCCBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTT--EEEEEEECCCSCTTHHHHHH
T ss_pred             CCCcCCCeEEECCCcCEEeHHHhCCCEEEEEeccCcccchHHHHHhhhhccccccccc--cccccccccccchhhhhhhH
Confidence            35679999 9999999999999999999999999999999999999999999998887  9999999874 567889999


Q ss_pred             hcCCCceec-cCC--hHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          116 ACMPWLAVP-YSD--LETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       116 ~~~~~~~~~-~~d--~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      ++.++...+ +.+  ......+...|++.++|+++|||+   +|+|+.+
T Consensus       110 ~~~~~~~~~~~~d~~~~~~~~~~~~~~v~~~P~~~lID~---~G~I~~~  155 (176)
T d1jfua_         110 KEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDP---QGCEIAT  155 (176)
T ss_dssp             HHTTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECT---TSBEEEE
T ss_pred             hhhCCcceeeeecchhHHHHHHhhhccCCCCCeEEEEcC---CCEEEEE
Confidence            987753322 112  223355666788999999999999   9999866

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.81  E-value=3.6e-20  Score=160.77  Aligned_cols=138  Identities=12%  Similarity=0.156  Sum_probs=111.7

Q ss_pred             hccCCCCccc-CCCC---------------CceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCC
Q 014225          202 LTNHDRGYLL-GHPP---------------DEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGD  264 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g---------------~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~  264 (428)
                      +|+++|+|++ +..|               + .+++++++||++||+|| +.|||+|..+++.|.+++++|++.      
T Consensus         5 vGd~aPdF~l~~~~g~~~~~~~~~~~~~~~~-~~~l~d~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~------   77 (169)
T d2bmxa1           5 IGDQFPAYQLTALIGGDLSKVDAKQPGDYFT-TITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDR------   77 (169)
T ss_dssp             TTCBCCCCEEEEECSSCGGGSCCSSGGGGEE-EEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTT------
T ss_pred             CCCCCCCCEEeeccCCccccccccccccccc-EeeHHHHCCCeEEEEEecCCCCcccccccccccccccccccc------
Confidence            6999999999 7777               5 78899999999999999 899999999999999999999987      


Q ss_pred             CCCCEEEEEEEcCCCHHHHHHHHhcC---CccccccCCcchhHHHHhcCc-----CccceEEEECCCCcEEeccccchhh
Q 014225          265 ALEDFEVVFVSTDRDQTSFESYFGTM---PWLALPFGDPTIKELTKYFDV-----QGIPCLVIIGPEGKTVTKQGRNLIN  336 (428)
Q Consensus       265 ~~~~~~iv~is~d~~~~~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~v-----~~~P~~~lid~~G~i~~~~~~~~~~  336 (428)
                         ++++++||.|. .....++...+   ..++||++.|.+..+++.|||     ...|++||||++|+|++......  
T Consensus        78 ---g~~vv~is~d~-~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~ygv~~~~~~~~r~~fvID~~G~I~~~~~~~~--  151 (169)
T d2bmxa1          78 ---DAQILGVSIDS-EFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGVLNADGVADRVTFIVDPNNEIQFVSATAG--  151 (169)
T ss_dssp             ---TEEEEEEESSC-HHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTCBCTTSSBCEEEEEECTTSBEEEEEEECT--
T ss_pred             ---Ccceeeccccc-hhhhhhhcccccccccceEEEEeccHHHHHHHcCCCccCCccceeEEEEcCCCEEEEEEEcCC--
Confidence               89999999994 44444454433   357899999999999999998     67899999999999988753211  


Q ss_pred             cccccCCCCChHHHHHHHHHHHHH
Q 014225          337 LYQENAYPFTEAKLEFLEKQMEEE  360 (428)
Q Consensus       337 ~~g~~~~p~~~~~~~~L~~~l~~~  360 (428)
                             + .+..++++.+.|+++
T Consensus       152 -------~-~~~~~~evl~~l~al  167 (169)
T d2bmxa1         152 -------S-VGRNVDEVLRVLDAL  167 (169)
T ss_dssp             -------T-CCCCHHHHHHHHHHH
T ss_pred             -------C-CCCCHHHHHHHHHHh
Confidence                   1 122456677666643

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.80  E-value=1.1e-19  Score=157.28  Aligned_cols=119  Identities=21%  Similarity=0.260  Sum_probs=102.5

Q ss_pred             hhccCCCCcc----c-CCCCCceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEE
Q 014225          201 LLTNHDRGYL----L-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV  274 (428)
Q Consensus       201 ~~g~~~p~f~----l-~~~g~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~i  274 (428)
                      .+|.++|+|+    + |.+|+ .++|++++||+|||+|| ++|||+|..+++.|.+++++|++.         +++|++|
T Consensus         4 kvG~~APdF~~~~~l~d~~g~-~vsLsd~~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~---------~~~v~~i   73 (167)
T d1e2ya_           4 KLNHPAPEFDDMALMPNGTFK-KVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEI---------NTEVISC   73 (167)
T ss_dssp             CTTSBCCCCEEEEECSSSCEE-EEEGGGGTTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTT---------TEEEEEE
T ss_pred             cCCCCCCCCcccccccCCCCc-EEeHHHHCCCeEEEEEcccccccccchhhHHHHHHHHHhhcC---------ceEEEee
Confidence            4799999998    6 88999 99999999999999999 999999999999999999999987         8999999


Q ss_pred             EcCCCHHHHHHHHhcCC------ccccccCCcchhHHHHhcCcC------ccceEEEECCCCcEEecc
Q 014225          275 STDRDQTSFESYFGTMP------WLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       275 s~d~~~~~~~~~~~~~~------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~  330 (428)
                      |.| +.....++.....      .+.++++.|....+.+.|++.      ..|++||||++|+|++..
T Consensus        74 s~d-~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~y~v~~~~~g~~~r~tfvID~~G~Ir~~~  140 (167)
T d1e2ya_          74 SCD-SEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDEDSGVAYRGVFIIDPNGKLRQII  140 (167)
T ss_dssp             ESS-CHHHHHHHHHSCGGGTCCCCCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred             cCC-cHHhHHHHHhhHHHhcccccccccccccchhHHHHHcCCCcccCCCceeEEEEECCCCEEEEEE
Confidence            998 4455555554332      257788888899999999982      468999999999998874

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.80  E-value=7.8e-20  Score=161.48  Aligned_cols=138  Identities=16%  Similarity=0.163  Sum_probs=112.9

Q ss_pred             hccCCCCcc----c-CCCCCceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEE
Q 014225          202 LTNHDRGYL----L-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS  275 (428)
Q Consensus       202 ~g~~~p~f~----l-~~~g~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is  275 (428)
                      .+.++|+|+    + |.+|+ ++++++++||+|||+|| +.||+.|..+++.|++++++|+..         +++|++||
T Consensus         5 ~~~PAPdFtl~a~l~d~~g~-~vsLsd~~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~---------g~~VlgIS   74 (194)
T d1uula_           5 DLHPAPDFNETALMPNGTFK-KVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDI---------GCEVLACS   74 (194)
T ss_dssp             TTSBCCCCEEEEECTTSCEE-EEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTT---------TEEEEEEE
T ss_pred             cCCCCCCCcccccccCCCCc-EEehHHhCCCeEEEEEEeCCccccchhhhhHHHhhhhhhccC---------ceEEEEEe
Confidence            478999998    6 88888 99999999999999999 899999999999999999999977         89999999


Q ss_pred             cCCCHHHHHHHHhcC------CccccccCCcchhHHHHhcCc------CccceEEEECCCCcEEeccccchhhcccccCC
Q 014225          276 TDRDQTSFESYFGTM------PWLALPFGDPTIKELTKYFDV------QGIPCLVIIGPEGKTVTKQGRNLINLYQENAY  343 (428)
Q Consensus       276 ~d~~~~~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~v------~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~  343 (428)
                      +| +....+++...+      ..+.||++.|.+.++++.||+      ...|++||||++|+|++....++         
T Consensus        75 ~D-s~~s~~~~~~~~~~~~~~~~l~fpllsD~~~~v~~~ygv~~~~~~~~~R~tfvID~~G~I~~~~~~~~---------  144 (194)
T d1uula_          75 MD-SEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDL---------  144 (194)
T ss_dssp             SS-CHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECT---------
T ss_pred             cC-chhhhhhhhhhhhhhccccCCCcceeeCCcchHHHHcCCeeccCCceEEEEEEECCCCeEEEEEEecC---------
Confidence            99 445555665543      347899999999999999999      35789999999999998753322         


Q ss_pred             CCChHHHHHHHHHHHHH
Q 014225          344 PFTEAKLEFLEKQMEEE  360 (428)
Q Consensus       344 p~~~~~~~~L~~~l~~~  360 (428)
                       ...+.++++.+.|+.+
T Consensus       145 -~~~r~~~E~Lr~l~al  160 (194)
T d1uula_         145 -PVGRDVDEALRLVKAF  160 (194)
T ss_dssp             -TBCCCHHHHHHHHHHH
T ss_pred             -CCCcCHHHHHHHHHHh
Confidence             1122356666666554

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.79  E-value=9.5e-20  Score=153.60  Aligned_cols=116  Identities=16%  Similarity=0.130  Sum_probs=97.0

Q ss_pred             ccccccCc-ccc--CCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecC-----CChH
Q 014225           38 LASKDRDY-LLN--QHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD-----EDLN  109 (428)
Q Consensus        38 ~g~~~pdf-l~~--~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D-----~~~~  109 (428)
                      +|.++|+| +.+  .+|+.++++.++||+++|+||++||++|+.++|.|+++++++++.   +.+++|+.+     .+..
T Consensus         3 ~g~~aP~~~~~~~~~ng~~~~~~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~---~~~i~v~~~~~~~~~~~~   79 (143)
T d2b5xa1           3 LRQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ---LNVVAVHMPRSEDDLDPG   79 (143)
T ss_dssp             TTCBCCCCCCCSEEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEECCCSTTTSSHH
T ss_pred             CCCcCCCCcCCccCcCCeEecHHHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhcc---ccceeEEeeccccccchh
Confidence            58899999 555  589999999999999999999999999999999999999999874   788999864     3456


Q ss_pred             HHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          110 AFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       110 ~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      .++++.+++++....+.|.+  ..+++.|++.++|++++||+   +|+++..
T Consensus        80 ~~~~~~~~~~~~~p~~~D~~--~~~~~~~~v~~~P~~~~id~---~G~i~~~  126 (143)
T d2b5xa1          80 KIKETAAEHDITQPIFVDSD--HALTDAFENEYVPAYYVFDK---TGQLRHF  126 (143)
T ss_dssp             HHHHHHHHTTCCSCEEECSS--CHHHHHTCCCCSSEEEEECT---TCBEEEE
T ss_pred             hhhhHHHhhccCccccccCc--cchHHHcCCCcCCEEEEECC---CCEEEEE
Confidence            67888888775322222443  68999999999999999999   9999866

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=99.78  E-value=2.5e-19  Score=155.33  Aligned_cols=141  Identities=16%  Similarity=0.215  Sum_probs=111.9

Q ss_pred             hhccCCCCccc-CCCCC----ceecccccCCc-EEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEE
Q 014225          201 LLTNHDRGYLL-GHPPD----EKVPVSSLVGK-TVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVF  273 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g~----~~v~l~~~~gk-~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~  273 (428)
                      ++|+++|||++ +.+|.    +.++|+++.|| +|||+|| +.|||.|..+++.+++.+++|++.         +++|++
T Consensus         2 lVG~~APdF~l~~~~g~~~~~~~~~Lsd~~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~---------g~~Vvg   72 (170)
T d1zofa1           2 VVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEK---------GFNVIG   72 (170)
T ss_dssp             CTTSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHT---------TEEEEE
T ss_pred             CCCCcCCCcCcccccCCCccceEEEeHHHcCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccC---------CeeEec
Confidence            57999999999 77763    26999999995 8999999 899999999999999999999987         899999


Q ss_pred             EEcCCCHHHHHHHHhcC------CccccccCCcchhHHHHhcCcC-----ccceEEEECCCCcEEeccccchhhcccccC
Q 014225          274 VSTDRDQTSFESYFGTM------PWLALPFGDPTIKELTKYFDVQ-----GIPCLVIIGPEGKTVTKQGRNLINLYQENA  342 (428)
Q Consensus       274 is~d~~~~~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~~~~~~~~g~~~  342 (428)
                      ||.| +.....+|....      ..+.||+..|....+.+.||+.     ..|++||||++|+|++....++        
T Consensus        73 is~d-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~~~ygv~~~~~~~~r~tfvID~~G~I~~~~~~~~--------  143 (170)
T d1zofa1          73 VSID-SEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVINDL--------  143 (170)
T ss_dssp             EESS-CHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEETTTEECEEEEEEETTTEEEEEEEESS--------
T ss_pred             cccc-chhhHHHHHhhhhhcccccCcccccccccccHHHHHcCCCccccceeEEEEEEcCCCeEEEEEEeCC--------
Confidence            9998 445555554433      2478888999999999999983     5789999999999987642211        


Q ss_pred             CCCChHHHHHHHHHHHHHH
Q 014225          343 YPFTEAKLEFLEKQMEEEA  361 (428)
Q Consensus       343 ~p~~~~~~~~L~~~l~~~~  361 (428)
                       + ..+..+++.+.|+.+.
T Consensus       144 -~-~~~~~~eiL~~l~aLq  160 (170)
T d1zofa1         144 -P-LGRNADEMLRMVDALL  160 (170)
T ss_dssp             -S-CCCHHHHHHHHHHHHH
T ss_pred             -C-CCCCHHHHHHHHHHhh
Confidence             1 2234667776666543

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.78  E-value=1.1e-19  Score=152.97  Aligned_cols=109  Identities=17%  Similarity=0.241  Sum_probs=92.5

Q ss_pred             cccCCCCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCC-----ChHHHHHHHhcCCC
Q 014225           46 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-----DLNAFNNYRACMPW  120 (428)
Q Consensus        46 l~~~~G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~-----~~~~~~~~~~~~~~  120 (428)
                      |.+.+|+++++++++||+++|+|||+||++|+.++|.|++++++++..+  +.+++|+.+.     ......++....++
T Consensus         8 l~~~~~~~~~l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~   85 (143)
T d2fy6a1           8 LKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSS--ANLITVASPGFLHEKKDGDFQKWYAGLNY   85 (143)
T ss_dssp             CEETTSCBGGGGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTT--SEEEEEECTTSTTCCCTTHHHHHHTTSCC
T ss_pred             eECCCCCEeeHHHhCCCEEEEEEECCCCccccccCcchhhhhhhhccCC--cEEEEEeeeecccccchhhhhhhhhhcCC
Confidence            7889999999999999999999999999999999999999999999887  8899998642     33455666776666


Q ss_pred             ceeccC-ChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          121 LAVPYS-DLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       121 ~~~~~~-d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      ..+|+. |.+  ..+++.|++.++|+++|||+   +|+++..
T Consensus        86 ~~~~~~~D~~--~~~~~~~~v~~~P~~~liD~---~G~i~~~  122 (143)
T d2fy6a1          86 PKLPVVTDNG--GTIAQSLNISVYPSWALIGK---DGDVQRI  122 (143)
T ss_dssp             TTSCEEECTT--CHHHHHTTCCSSSEEEEECT---TSCEEEE
T ss_pred             cccccccccc--hHHHHHcCCCccCEEEEECC---CCEEEEE
Confidence            555432 333  78999999999999999999   9998866

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.77  E-value=8.1e-19  Score=150.24  Aligned_cols=116  Identities=18%  Similarity=0.262  Sum_probs=101.3

Q ss_pred             cCCCCccc----CCCCCceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC
Q 014225          204 NHDRGYLL----GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR  278 (428)
Q Consensus       204 ~~~p~f~l----~~~g~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~  278 (428)
                      +.+|+|++    +.+|+ .++|++++||+|||+|| +.|||.|..+++.+++++++|...         +.+|++||.| 
T Consensus         1 ~~AP~F~l~~~~~~~~~-~vsL~d~~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~---------~~~vigIS~d-   69 (158)
T d1zyea1           1 QHAPYFKGTAVVSGEFK-EISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDV---------NCEVVAVSVD-   69 (158)
T ss_dssp             SBCCCCEEEEECSSSEE-EEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHT---------TEEEEEEESS-
T ss_pred             CCCCCCccceeeCCCcc-EEeHHHhCCCeEEEEEeehhcCCccccchhhHHHhHHHhhcC---------CceEEeccCc-
Confidence            36899985    45666 89999999999999999 889999999999999999999987         8999999999 


Q ss_pred             CHHHHHHHHhcC------CccccccCCcchhHHHHhcCcC------ccceEEEECCCCcEEecc
Q 014225          279 DQTSFESYFGTM------PWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       279 ~~~~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~  330 (428)
                      +....++|....      ..++||++.|....+++.||+.      +.|++||||++|+|++..
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~~ygv~~~~~g~~~R~tfvID~~G~I~~~~  133 (158)
T d1zyea1          70 SHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLS  133 (158)
T ss_dssp             CHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred             CHHHHHHHHhhhHhhccccccccccccccccHHHHHHHhccccCCccccEEEEECCCCEEEEEE
Confidence            566677777753      4578999999999999999985      467899999999999874

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.76  E-value=6.9e-19  Score=149.94  Aligned_cols=117  Identities=11%  Similarity=0.153  Sum_probs=97.3

Q ss_pred             hccCCCCccc-CCCCCceecccccCCc-EEEEEE-eccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSLVGK-TVGLYF-SARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR  278 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk-~vll~F-~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~  278 (428)
                      +|.++|+|++ +.+|+ ++++++++|+ +++|.| |++|||+|..+++.|.++++++...         +++|++|+.| 
T Consensus         4 vG~~aPdF~l~d~~G~-~~slsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~---------~~~vi~vs~d-   72 (153)
T d1xvwa1           4 VGATAPDFTLRDQNQQ-LVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFEND---------DSAALAISVG-   72 (153)
T ss_dssp             TTSBCCCCEEECTTSC-EEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSS---------SEEEEEEESC-
T ss_pred             CcCCCcCeEEECCCCC-EEeHHHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhccc---------ccccccccch-
Confidence            6999999999 99999 9999999994 555554 4899999999999999999998766         8999999998 


Q ss_pred             CHHHHHHHHhcCCccccccCC--cchhHHHHhcCcC------ccceEEEECCCCcEEecc
Q 014225          279 DQTSFESYFGTMPWLALPFGD--PTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~  330 (428)
                      +...+++|....+ +.+++..  +....+++.||+.      ..|++||||++|+|++.+
T Consensus        73 ~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ygv~~~~~g~~~r~tfvID~~G~I~~~~  131 (153)
T d1xvwa1          73 PPPTHKIWATQSG-FTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAE  131 (153)
T ss_dssp             CHHHHHHHHHHHT-CCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEE
T ss_pred             hhhHHHHHhhhhc-cceeEEecccccchhHHHhhhhhhccCceeeeEEEECCCCEEEEEE
Confidence            6778888888766 4555543  3467899999983      346799999999998875

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.76  E-value=2e-19  Score=151.81  Aligned_cols=111  Identities=14%  Similarity=0.228  Sum_probs=90.9

Q ss_pred             cccCc-cccCCC--------CEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHH
Q 014225           41 KDRDY-LLNQHG--------TQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAF  111 (428)
Q Consensus        41 ~~pdf-l~~~~G--------~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~  111 (428)
                      +||+| |...+|        ..+++++++||+++|+||++||++|+.++|.++++++++   +  +++++|+.+......
T Consensus         2 paP~~~lp~~~g~~~~~~~~~~~~~~~~kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~---~--~~~~~i~~~~~~~~~   76 (144)
T d1knga_           2 PAPQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKDK---R--FQLVGINYKDAADNA   76 (144)
T ss_dssp             BCCCCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTCT---T--SEEEEEEESCCHHHH
T ss_pred             CCCCCCCCCCCCccccCCcCCccCHHHhCCCEEEEEeeccccccccccCchhhhhhhcc---C--ceeEEEEeeechHHH
Confidence            45666 655555        668889999999999999999999999999999886653   3  789999999999999


Q ss_pred             HHHHhcCCCceecc-CChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          112 NNYRACMPWLAVPY-SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       112 ~~~~~~~~~~~~~~-~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +++.+++++...+. .|.+  ..+.+.|++.++|+++|||+   +|+++..
T Consensus        77 ~~~~~~~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~liD~---~G~i~~~  122 (144)
T d1knga_          77 RRFLGRYGNPFGRVGVDAN--GRASIEWGVYGVPETFVVGR---EGTIVYK  122 (144)
T ss_dssp             HHHHHHHCCCCSEEEEETT--SHHHHHTTCCSSCEEEEECT---TSBEEEE
T ss_pred             HHHHHHcCCcccccccccc--chhhhhcCccccceEEEEcC---CCeEEEE
Confidence            99998776543322 1333  68999999999999999999   9999876

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=4e-19  Score=151.95  Aligned_cols=117  Identities=15%  Similarity=0.146  Sum_probs=100.2

Q ss_pred             hccCCCCccc-CCCCCceecccccC--CcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSLV--GKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD  277 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~~--gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d  277 (428)
                      +|+++|+|+| +.+|+ .++++++.  |++|+++|| +.|||+|..+++.|++.+.+|++.          +.+++||.|
T Consensus         7 vG~~aP~f~L~~~~g~-~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~----------~~~~~is~d   75 (156)
T d2a4va1           7 IGDPIPDLSLLNEDND-SISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEY----------AAVFGLSAD   75 (156)
T ss_dssp             TTCBCCSCEEECTTSC-EEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTT----------CEEEEEESC
T ss_pred             CCCCCCCeEEECCCCC-EEeeHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhhc----------cceeeeccc
Confidence            7999999999 99999 99999984  567888877 789999999999999999999754          678999988


Q ss_pred             CCHHHHHHHHhcCCccccccCCcchhHHHHhcCcCccce-----EEEECCCCcEEeccc
Q 014225          278 RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPC-----LVIIGPEGKTVTKQG  331 (428)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~-----~~lid~~G~i~~~~~  331 (428)
                       +.+..++|..+++ ++||++.|.+.++++.||+...|.     .++|+.+|+++.++.
T Consensus        76 -~~~~~~~f~~~~~-l~f~~L~D~~~~v~~~ygv~~~~~~~~~r~~~i~~dg~i~~~~~  132 (156)
T d2a4va1          76 -SVTSQKKFQSKQN-LPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIFVDGKLKFKRV  132 (156)
T ss_dssp             -CHHHHHHHHHHHT-CSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEEETTEEEEEEE
T ss_pred             -hhhhHHhhhcccC-ccceeccchHHHHHHHcCCCccccCCeeEEEEEEECCeEEEEEE
Confidence             7788889988877 789999999999999999866552     444548999988753

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.75  E-value=3.4e-18  Score=149.59  Aligned_cols=120  Identities=14%  Similarity=0.221  Sum_probs=102.8

Q ss_pred             hhccCCCCccc-C-CCCC-ceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEc
Q 014225          201 LLTNHDRGYLL-G-HPPD-EKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST  276 (428)
Q Consensus       201 ~~g~~~p~f~l-~-~~g~-~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~  276 (428)
                      ++|+++|+|++ . .+|+ .++++++++||++||+|| +.|||.|..+++.|++.+++|.+.         +++|++||+
T Consensus         2 lIg~~aP~F~~~a~~~g~~~~vsLsd~kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~---------~~~v~gIS~   72 (186)
T d1n8ja_           2 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKL---------GVDVYSVST   72 (186)
T ss_dssp             CTTCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHT---------TEEEEEEES
T ss_pred             CCCCcCCCCEeeeeeCCeeEEEeHHHhCCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccc---------cEEEEeccc
Confidence            68999999997 3 3443 178999999999999999 789999999999999999999987         899999999


Q ss_pred             CCCHHHHHHHHhcC---CccccccCCcchhHHHHhcCcC------ccceEEEECCCCcEEecc
Q 014225          277 DRDQTSFESYFGTM---PWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       277 d~~~~~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~  330 (428)
                      | +....++|.+..   ..+.||++.|.+..+++.||+.      ..|++||||++|+|++..
T Consensus        73 D-s~~sh~~f~~~~~~~~~~~fpllsD~~~~v~~~yGv~~~~~g~~~r~tfiID~~G~Ir~~~  134 (186)
T d1n8ja_          73 D-THFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIE  134 (186)
T ss_dssp             S-CHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred             c-CHHHHHHHhccccccccccccccccHHHHHHHHhCCCcccCCcceeeEEEECchheEEEEe
Confidence            8 566666666544   3578999999999999999983      468899999999998874

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=5.8e-19  Score=147.34  Aligned_cols=104  Identities=17%  Similarity=0.171  Sum_probs=86.9

Q ss_pred             ccCCCCEEecccC-CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceecc
Q 014225           47 LNQHGTQVKVSDL-EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPY  125 (428)
Q Consensus        47 ~~~~G~~v~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~  125 (428)
                      .|..|+.++.+.+ +||+|+|+|||+||+||+.++|.|+++++    .+  +.+++++.+.+......++.+.++...+.
T Consensus         5 ld~~g~~~~~~~l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~----~~--~~vi~i~~~~~~~~~~~~~~~~~~~~~~~   78 (136)
T d1z5ye1           5 LDNPGQFYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSA----QG--IRVVGMNYKDDRQKAISWLKELGNPYALS   78 (136)
T ss_dssp             SSSTTCEECHHHHHSSSCEEEEEECTTCHHHHHHHHHHHHHHH----TT--CCEEEEEESCCHHHHHHHHHHHCCCCSEE
T ss_pred             ccCCCcEecHHHHcCCCEEEEEEEcCcCCCcCccccchhhhhh----hh--hhhcccccccchhhhHHHHHHcCCcccee
Confidence            3567999999998 89999999999999999999999988754    34  88999999999888888888766543322


Q ss_pred             -CChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          126 -SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       126 -~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                       .+.+  ..+.+.|++.++|+++|||+   +|+++.+
T Consensus        79 ~~d~~--~~~~~~~~v~~~P~~~liD~---~G~i~~~  110 (136)
T d1z5ye1          79 LFDGD--GMLGLDLGVYGAPETFLIDG---NGIIRYR  110 (136)
T ss_dssp             EEESS--CHHHHHHTCCSBSEEEEECT---TSCEEEE
T ss_pred             ecccc--hhHHHhcccCCcceEEEEcC---CCEEEEE
Confidence             1333  67899999999999999999   9999866

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=99.73  E-value=4.2e-18  Score=146.85  Aligned_cols=118  Identities=19%  Similarity=0.253  Sum_probs=94.6

Q ss_pred             ccccccccCc-ccc----CCCCEEecccCCCCEEEEEEecC-CChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChH
Q 014225           36 SLLASKDRDY-LLN----QHGTQVKVSDLEGKVTALYFSAN-WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLN  109 (428)
Q Consensus        36 ~~~g~~~pdf-l~~----~~G~~v~l~~~~gk~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~  109 (428)
                      +++|.++||| |.+    .++.+++|++++||.++|+||.. |||+|..+++.|++++++|++.|  +++++||.|.. +
T Consensus         1 ~lvG~~aP~F~l~~~~~g~~~~~vslsd~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g--~~vv~IS~D~~-~   77 (166)
T d1we0a1           1 SLIGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLG--VEVYSVSTDTH-F   77 (166)
T ss_dssp             CCTTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTT--EEEEEEESSCH-H
T ss_pred             CCCCCcCCCCEEeeecCCcceeEeeHHHhCCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccc--eEEEecccccH-H
Confidence            5789999999 875    34568999999999999999955 99999999999999999999998  99999999854 3


Q ss_pred             HHHHHHhcC----CCceeccCChHHHHHHHhhcCCC------CCceEEEEcCCCCCCCcccc
Q 014225          110 AFNNYRACM----PWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       110 ~~~~~~~~~----~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.+++.+++    ++.+...+|.+  ..++++||+.      ..|+++|||+   +|+|+..
T Consensus        78 ~~~~~~~~~~~~~~~~fpll~D~~--~~v~~~ygv~~~~~~~~~r~tfvID~---~G~I~~~  134 (166)
T d1we0a1          78 VHKAWHENSPAVGSIEYIMIGDPS--QTISRQFDVLNEETGLADRGTFIIDP---DGVIQAI  134 (166)
T ss_dssp             HHHHHHHSCHHHHTCCSEEEECTT--CHHHHHTTCEETTTTEECEEEEEECT---TSBEEEE
T ss_pred             HHHHHhhhhhhhcccccccccCcc--cHHHHHhCCCccccCcccceEEEECC---CCcEEEE
Confidence            445555543    32212223544  7899999873      5688999999   9999765

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.73  E-value=5.3e-18  Score=153.43  Aligned_cols=119  Identities=11%  Similarity=0.163  Sum_probs=100.1

Q ss_pred             hhccCCCCccc-CCCCCceeccccc---CCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEE
Q 014225          201 LLTNHDRGYLL-GHPPDEKVPVSSL---VGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS  275 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g~~~v~l~~~---~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is  275 (428)
                      ++|+++|+|++ +.+|.  +.++++   +||++||+|| +.|||.|..+++.|.+++++|+++         +++|++||
T Consensus         2 lIGd~aPdF~l~t~~G~--i~~~d~~~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~---------g~~vigiS   70 (237)
T d2zcta1           2 LIGERFPEMEVTTDHGV--IKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRL---------GVDLIGLS   70 (237)
T ss_dssp             CTTSBCCCEEEEETTEE--EEETHHHHTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHT---------TEEEEEEE
T ss_pred             CCCCCCCCeEEEcCCCC--EEechHhhcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccC---------Ccceeecc
Confidence            47999999999 87774  556553   7999999999 899999999999999999999988         89999999


Q ss_pred             cCCC--HHHHHHHHhc--CCccccccCCcchhHHHHhcCc-------CccceEEEECCCCcEEecc
Q 014225          276 TDRD--QTSFESYFGT--MPWLALPFGDPTIKELTKYFDV-------QGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       276 ~d~~--~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~v-------~~~P~~~lid~~G~i~~~~  330 (428)
                      +|..  ...|.+....  ...++||+..|.+..+++.||+       ...|++||||++|+|+...
T Consensus        71 ~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~~~vak~yGv~~~~~~~~~~RatFIIDpdG~Ir~~~  136 (237)
T d2zcta1          71 VDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTML  136 (237)
T ss_dssp             SSCHHHHHHHHHHHHHHHCCCCCSCEEECGGGHHHHHTTCC----CCTTCCEEEEECTTSBEEEEE
T ss_pred             CCcHHHHHHHhhhhhhhcccccccccccCcchHHHHHcCCccccccccceeeeEEECCCCEEEEEE
Confidence            9952  3444444432  3458899999999999999998       4689999999999998864

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=6e-18  Score=149.48  Aligned_cols=139  Identities=17%  Similarity=0.177  Sum_probs=113.9

Q ss_pred             hhccCCCCccc----CCCCCceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEE
Q 014225          201 LLTNHDRGYLL----GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS  275 (428)
Q Consensus       201 ~~g~~~p~f~l----~~~g~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is  275 (428)
                      .+|.++|+|++    +.+|. .++|++++||++||+|| +.|||.|..++..|++++++|++.         +++|++||
T Consensus         6 ~VG~~AP~F~l~~~~d~~~~-~v~L~d~~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~---------g~~vigIS   75 (197)
T d1qmva_           6 RIGKPAPDFKATAVVDGAFK-EVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKL---------GCEVLGVS   75 (197)
T ss_dssp             CTTSBCCCCEEEEEETTEEE-EEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTT---------TEEEEEEE
T ss_pred             cCCCcCCCCCCcceeCCCCc-EEeHHHhCCCeEEEEEecccccccchhhhHHHHHHHHHhccC---------CcEEEEEe
Confidence            47999999976    56777 89999999999999999 799999999999999999999987         89999999


Q ss_pred             cCCCHHHHHHHHhcC------CccccccCCcchhHHHHhcCcC------ccceEEEECCCCcEEeccccchhhcccccCC
Q 014225          276 TDRDQTSFESYFGTM------PWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQGRNLINLYQENAY  343 (428)
Q Consensus       276 ~d~~~~~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~  343 (428)
                      +| +....++|..+.      ..+.||++.|...++++.||+.      ..|++||||++|+|++.....+         
T Consensus        76 ~D-~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~va~~ygv~~~~~g~~~R~tfiID~~g~Ir~~~~~~~---------  145 (197)
T d1qmva_          76 VD-SQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDL---------  145 (197)
T ss_dssp             SS-CHHHHHHHHTSCGGGTCCCSCSSCEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECT---------
T ss_pred             cC-CHHHHHhhhcchhhhcCcCCCccceEeccchHHHHHhCCCcccCCeeeEEEEEECCCCcEEEEEecCC---------
Confidence            99 555667776653      2478999999999999999994      4688999999999988743322         


Q ss_pred             CCChHHHHHHHHHHHHH
Q 014225          344 PFTEAKLEFLEKQMEEE  360 (428)
Q Consensus       344 p~~~~~~~~L~~~l~~~  360 (428)
                       ...+.++++.+.|+.+
T Consensus       146 -~~~r~~~E~lr~l~al  161 (197)
T d1qmva_         146 -PVGRSVDEALRLVQAF  161 (197)
T ss_dssp             -TBCCCHHHHHHHHHHH
T ss_pred             -CcccCHHHHHHHHHhh
Confidence             1223456666666554

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=4.3e-18  Score=146.63  Aligned_cols=118  Identities=15%  Similarity=0.157  Sum_probs=97.6

Q ss_pred             hccCCCCccc-CCCCCceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD  279 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~  279 (428)
                      +|.++|+|+| +.+|+ .++|++++||++||+|| +.|||+|..+++.|++++.++.           ++.+++||.| +
T Consensus        20 vG~~APdF~L~~~~g~-~vsLsd~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~-----------~~~vv~Is~d-~   86 (164)
T d1qxha_          20 AGSKAQTFTLVAKDLS-DVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEID-----------NTVVLCISAD-L   86 (164)
T ss_dssp             TTSBCCCCEEECTTSC-EEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTST-----------TEEEEEEESS-C
T ss_pred             CCCCCCCeEEECCCCC-EEeHHHhCCCeEEEEEecchhcccchHHHHHHHHHHHhhc-----------cceeeeEEcC-C
Confidence            6999999999 99999 99999999999999998 6799999999999998876653           6899999998 5


Q ss_pred             HHHHHHHHhcCCcccccc--CCcchhHHHHhcCcC---------ccceEEEECCCCcEEeccccc
Q 014225          280 QTSFESYFGTMPWLALPF--GDPTIKELTKYFDVQ---------GIPCLVIIGPEGKTVTKQGRN  333 (428)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~--~~d~~~~~~~~~~v~---------~~P~~~lid~~G~i~~~~~~~  333 (428)
                      ....+++....+ +.+++  ..|.+.++++.||+.         ..|++||||++|+|++.+..+
T Consensus        87 ~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~ygv~~~~~~~~g~~~ra~fvID~~G~I~y~~~~~  150 (164)
T d1qxha_          87 PFAQSRFCGAEG-LNNVITLSTFRNAEFLQAYGVAIADGPLKGLAARAVVVIDENDNVIFSQLVD  150 (164)
T ss_dssp             HHHHTTCCSSTT-CTTEEEEECTTCHHHHHHTTCBBCSSTTTTSBCCEEEEECTTSBEEEEEECS
T ss_pred             HHHHHHHHHHhC-CCcceeeccccchhhHHhcCeEeecCcccCcccCEEEEEcCCCEEEEEEEcC
Confidence            666777776655 44444  456678999999973         247899999999999875443

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.72  E-value=4.1e-18  Score=147.99  Aligned_cols=125  Identities=17%  Similarity=0.263  Sum_probs=96.5

Q ss_pred             HhhhhccCCCCccc-CCCCCceecccccCCcEEEEEEeccCCh-hHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEE
Q 014225          198 LINLLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCI-PCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS  275 (428)
Q Consensus       198 ~~~~~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~-~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is  275 (428)
                      +.+.++.++|+|++ +.+|+ .+++++++||++||+||++||| +|...++.|.++++.+.+.       +.++.+++||
T Consensus         3 ~~~p~~~~~p~F~l~d~~G~-~vsl~d~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~-------~~~v~~v~is   74 (172)
T d1xzoa1           3 IKDPLNYEVEPFTFQNQDGK-NVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAE-------NIDVRIISFS   74 (172)
T ss_dssp             CCSCCCEECCCCEEECTTSC-EEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHT-------TCCCEEEEEE
T ss_pred             ccCCCCCcCCCeEEEcCCCC-EEcHHHhCCCEEEEEEecccccccccccchhhhhhhhhhccc-------cccccccccc
Confidence            34567888999999 99999 9999999999999999999997 7999999999999999765       5679999999


Q ss_pred             cCC---CHHHHHHHHhcCCc--cccccCCcchhH-----HHHhcCcC-----------ccceEEEECCCCcEEecc
Q 014225          276 TDR---DQTSFESYFGTMPW--LALPFGDPTIKE-----LTKYFDVQ-----------GIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       276 ~d~---~~~~~~~~~~~~~~--~~~~~~~d~~~~-----~~~~~~v~-----------~~P~~~lid~~G~i~~~~  330 (428)
                      +|.   +++..++|...++.  ..+.++.+....     ..+.|++.           ..|.+||||++|+|+..+
T Consensus        75 iDp~~Dtp~~l~~y~~~~~~~~~~w~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~  150 (172)
T d1xzoa1          75 VDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDY  150 (172)
T ss_dssp             SCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEE
T ss_pred             cccccchHHHHHHHHHHhccccccceeeccchHHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEEEEE
Confidence            984   46778888886652  222232221111     23344331           236799999999999764

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.71  E-value=2.2e-18  Score=147.77  Aligned_cols=118  Identities=19%  Similarity=0.279  Sum_probs=97.6

Q ss_pred             ccccccCc-cccCCCCEEecccC--CCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHH
Q 014225           38 LASKDRDY-LLNQHGTQVKVSDL--EGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNN  113 (428)
Q Consensus        38 ~g~~~pdf-l~~~~G~~v~l~~~--~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~  113 (428)
                      +|+++||| |.+.+|+.++|+++  +||+++|+|| ++|||+|..+++.++++++++++.+  +.+++|+.| +.+..++
T Consensus         4 vG~~aPdF~L~~~~G~~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vv~is~d-~~~~~~~   80 (160)
T d2cx4a1           4 LGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKAN--AEVLAISVD-SPWCLKK   80 (160)
T ss_dssp             TTSBCCCCEECCTTSCCEEHHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTC--CEEEEEESS-CHHHHHH
T ss_pred             CCCCCcCeEeECCCCCEEehHHHhhCCCEEEEEecccccCCchhhhhhhhhcccccccccc--ccccccccc-chhhhhh
Confidence            69999999 99999999999998  8999999998 9999999999999999999999987  899999887 4556777


Q ss_pred             HHhcCCCceeccCChHHHHHHHhhcCC----------CCCceEEEEcCCCCCCCcccccc
Q 014225          114 YRACMPWLAVPYSDLETKKALNRKFDI----------EGIPCLVVLQPYDDKDDATLHDG  163 (428)
Q Consensus       114 ~~~~~~~~~~~~~d~~~~~~l~~~~~v----------~~~P~~~lid~~~~dG~i~~~~~  163 (428)
                      +..+.+......+|.+  ..+.+.||+          ...|+++|||+   +|+|++...
T Consensus        81 ~~~~~~~~~~~l~D~~--~~~~~~~gv~~~~~~~~~~~~~~~~flId~---~G~I~~~~~  135 (160)
T d2cx4a1          81 FKDENRLAFNLLSDYN--REVIKLYNVYHEDLKGLKMVAKRAVFIVKP---DGTVAYKWV  135 (160)
T ss_dssp             HHHHHTCSSEEEECTT--SHHHHHTTCEEEEETTEEEEECCEEEEECT---TSBEEEEEE
T ss_pred             hcccceeeEEEeecCC--cchHHHcCccccccccccccceeeEEEEcC---CCEEEEEEE
Confidence            7776543222223443  678899987          35789999999   999987643

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.71  E-value=3.9e-18  Score=145.17  Aligned_cols=119  Identities=14%  Similarity=0.183  Sum_probs=94.8

Q ss_pred             ccccccCc-cccCCCCEEecccCCCC--EEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHH
Q 014225           38 LASKDRDY-LLNQHGTQVKVSDLEGK--VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNY  114 (428)
Q Consensus        38 ~g~~~pdf-l~~~~G~~v~l~~~~gk--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~  114 (428)
                      +|+++||| |.+.+|++++|++++||  +|+++||++|||+|..+++.|++++++++..+  +++++|+.|. .+..++|
T Consensus         4 vG~~aPdF~l~d~~G~~~slsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~--~~vi~vs~d~-~~~~~~~   80 (153)
T d1xvwa1           4 VGATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDD--SAALAISVGP-PPTHKIW   80 (153)
T ss_dssp             TTSBCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSS--EEEEEEESCC-HHHHHHH
T ss_pred             CcCCCcCeEEECCCCCEEeHHHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhcccc--cccccccchh-hhHHHHH
Confidence            59999999 99999999999999996  45555669999999999999999999998887  9999999875 4567888


Q ss_pred             HhcCCCceeccCChHHHHHHHhhcCCC------CCceEEEEcCCCCCCCccccc
Q 014225          115 RACMPWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       115 ~~~~~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~dG~i~~~~  162 (428)
                      .++.++.....++.+....+.+.|++.      ..|+++|||+   +|+|++..
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~ygv~~~~~g~~~r~tfvID~---~G~I~~~~  131 (153)
T d1xvwa1          81 ATQSGFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDR---SGIIRFAE  131 (153)
T ss_dssp             HHHHTCCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECT---TSBEEEEE
T ss_pred             hhhhccceeEEecccccchhHHHhhhhhhccCceeeeEEEECC---CCEEEEEE
Confidence            886654322222332236788999873      3467999999   99997653

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.71  E-value=9e-18  Score=144.90  Aligned_cols=116  Identities=15%  Similarity=0.128  Sum_probs=88.5

Q ss_pred             hccCCCCccc-CCCCCceecccccCCcEEEEEEec-cCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSA-RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD  279 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~  279 (428)
                      +|.++|+|+| +.+|+ .+++++++||++||+||+ .|||.|..+++.|++.   +.+.         +++|++|++| +
T Consensus        19 iG~~aP~F~L~~~~g~-~v~L~d~~Gk~vvl~f~~~~~~p~C~~e~~~l~~~---~~~~---------g~~vv~Is~d-~   84 (166)
T d1xvqa_          19 VGSPAPAFTLTGGDLG-VISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDER---AAAS---------GATVLCVSKD-L   84 (166)
T ss_dssp             TTSBCCCCEEECTTSC-EEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHH---HHHT---------TCEEEEEESS-C
T ss_pred             CcCCCCCeEEECCCCC-EEehHHhCCcEEEEEeeecccccccHHHHHHHhhh---cccc---------cccccccccc-h
Confidence            6999999999 99999 999999999999999994 5899999998877654   4444         6899999998 5


Q ss_pred             HHHHHHHHhcCCccccccCCcchhHHHHhcCcC---------ccceEEEECCCCcEEeccc
Q 014225          280 QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ---------GIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~---------~~P~~~lid~~G~i~~~~~  331 (428)
                      ..+.+++.............+....+.+.|++.         ..|++||||++|+|++.+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~ra~fvID~~G~I~y~~~  145 (166)
T d1xvqa_          85 PFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTEL  145 (166)
T ss_dssp             HHHHTTCC------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEEE
T ss_pred             HHHHHHHHHHhCCcccccccchhHHHHHHhCeeeccCcccCceeeEEEEEeCCCEEEEEEE
Confidence            566667766655333333445567788888763         2468999999999998754

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.70  E-value=1.1e-17  Score=143.88  Aligned_cols=118  Identities=10%  Similarity=0.034  Sum_probs=92.5

Q ss_pred             hccCCCCccc-CCCCCceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD  279 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~  279 (428)
                      +|+++|+|+| +.+|+ .+++++++||++||.|| +.|||.|..+++.|.+.+.+++           ++.+++|+.| +
T Consensus        18 vG~~aPdF~L~~~~g~-~vsLsd~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~-----------~~~vv~Is~d-~   84 (163)
T d1psqa_          18 VGDKALDFSLTTTDLS-KKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD-----------NTVVLTVSMD-L   84 (163)
T ss_dssp             TTSBCCCCEEECTTSC-EEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCT-----------TEEEEEEESS-C
T ss_pred             CCCCCCCeEEECCCCC-EEehHHhCCcEEEEEeccccccccchhhHHHHHHHHHhhc-----------ccceEEEEec-c
Confidence            6999999999 99999 99999999999999999 6799999999999887766663           5899999988 4


Q ss_pred             HHHHHHHHhcCCccccc-cCCcchhHHHHhcCcCc------cceEEEECCCCcEEecccc
Q 014225          280 QTSFESYFGTMPWLALP-FGDPTIKELTKYFDVQG------IPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       280 ~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~v~~------~P~~~lid~~G~i~~~~~~  332 (428)
                      ....+++....+...++ +.++....+.+.||+..      .|++||||++|+|++.+..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ygv~~~~~~~~~Ra~fvID~~G~I~y~~~~  144 (163)
T d1psqa_          85 PFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEYV  144 (163)
T ss_dssp             HHHHHHHHHHHTCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEEC
T ss_pred             HHHHHHHHHHcCCcceeeeccccchhHHHhheeecccccceeEEEEEECCCCEEEEEEEc
Confidence            45555555544433223 33445678999999742      2468999999999987543

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=1.4e-17  Score=143.33  Aligned_cols=119  Identities=14%  Similarity=0.156  Sum_probs=94.1

Q ss_pred             cccccccCc-cccCCCCEEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHH
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNY  114 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~  114 (428)
                      .+|++|||| |.+.+|++++|++++||+++|+|| +.||++|..++|.|++++.++.  +  +++++||.|. ....+++
T Consensus        19 ~vG~~APdF~L~~~~g~~vsLsd~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~--~--~~vv~Is~d~-~~~~~~~   93 (164)
T d1qxha_          19 QAGSKAQTFTLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEID--N--TVVLCISADL-PFAQSRF   93 (164)
T ss_dssp             CTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTST--T--EEEEEEESSC-HHHHTTC
T ss_pred             CCCCCCCCeEEECCCCCEEeHHHhCCCeEEEEEecchhcccchHHHHHHHHHHHhhc--c--ceeeeEEcCC-HHHHHHH
Confidence            379999999 999999999999999999999888 7799999999999999988763  3  8999999984 4456777


Q ss_pred             HhcCCCc--eeccCChHHHHHHHhhcCCC---------CCceEEEEcCCCCCCCcccccchh
Q 014225          115 RACMPWL--AVPYSDLETKKALNRKFDIE---------GIPCLVVLQPYDDKDDATLHDGVE  165 (428)
Q Consensus       115 ~~~~~~~--~~~~~d~~~~~~l~~~~~v~---------~~P~~~lid~~~~dG~i~~~~~~~  165 (428)
                      .++++..  .+...+.+  ..+.+.||+.         ..|+++|||+   +|+|++.....
T Consensus        94 ~~~~~~~~~~~~~~d~~--~~~~~~ygv~~~~~~~~g~~~ra~fvID~---~G~I~y~~~~~  150 (164)
T d1qxha_          94 CGAEGLNNVITLSTFRN--AEFLQAYGVAIADGPLKGLAARAVVVIDE---NDNVIFSQLVD  150 (164)
T ss_dssp             CSSTTCTTEEEEECTTC--HHHHHHTTCBBCSSTTTTSBCCEEEEECT---TSBEEEEEECS
T ss_pred             HHHhCCCcceeeccccc--hhhHHhcCeEeecCcccCcccCEEEEEcC---CCEEEEEEEcC
Confidence            7666532  12112333  7888999873         2478999999   99998764443

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.69  E-value=2.2e-17  Score=142.63  Aligned_cols=118  Identities=18%  Similarity=0.271  Sum_probs=92.8

Q ss_pred             cccccccCc-----cccCCCCEEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHH
Q 014225           37 LLASKDRDY-----LLNQHGTQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA  110 (428)
Q Consensus        37 ~~g~~~pdf-----l~~~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~  110 (428)
                      -+|+.||||     |.|.+|++++|++++||+|+|+|| ++||++|..+++.|++++++|++.+  +++++||.|.... 
T Consensus         4 kvG~~APdF~~~~~l~d~~g~~vsLsd~~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~--~~v~~is~d~~~~-   80 (167)
T d1e2ya_           4 KLNHPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEIN--TEVISCSCDSEYS-   80 (167)
T ss_dssp             CTTSBCCCCEEEEECSSSCEEEEEGGGGTTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTT--EEEEEEESSCHHH-
T ss_pred             cCCCCCCCCcccccccCCCCcEEeHHHHCCCeEEEEEcccccccccchhhHHHHHHHHHhhcCc--eEEEeecCCcHHh-
Confidence            469999999     457799999999999999999999 9999999999999999999999988  9999999986543 


Q ss_pred             HHHHHhcCC----C--ceec-cCChHHHHHHHhhcCCC------CCceEEEEcCCCCCCCccccc
Q 014225          111 FNNYRACMP----W--LAVP-YSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       111 ~~~~~~~~~----~--~~~~-~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~dG~i~~~~  162 (428)
                      ..++..+..    -  ..++ ..|.+  ..+.+.|++.      .+|+++|||+   +|+|++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~d~~--~~~~~~y~v~~~~~g~~~r~tfvID~---~G~Ir~~~  140 (167)
T d1e2ya_          81 HLQWTSVDRKKGGLGPMAIPMLADKT--KAIARAYGVLDEDSGVAYRGVFIIDP---NGKLRQII  140 (167)
T ss_dssp             HHHHHHSCGGGTCCCCCSSCEEECTT--CHHHHHHTCEETTTTEECEEEEEECT---TSBEEEEE
T ss_pred             HHHHHhhHHHhcccccccccccccch--hHHHHHcCCCcccCCCceeEEEEECC---CCEEEEEE
Confidence            334433221    0  1111 12333  7888888872      4689999999   99997653

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.69  E-value=3e-17  Score=141.99  Aligned_cols=115  Identities=17%  Similarity=0.328  Sum_probs=94.3

Q ss_pred             ccccccCc-cccCCC---------------CEEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEE
Q 014225           38 LASKDRDY-LLNQHG---------------TQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVV  100 (428)
Q Consensus        38 ~g~~~pdf-l~~~~G---------------~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii  100 (428)
                      +|+++||| |.+..|               +.+++++++||.++|+|| ++|||+|..+++.+++++++|++.|  ++++
T Consensus         5 vGd~aPdF~l~~~~g~~~~~~~~~~~~~~~~~~~l~d~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g--~~vv   82 (169)
T d2bmxa1           5 IGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRD--AQIL   82 (169)
T ss_dssp             TTCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTT--EEEE
T ss_pred             CCCCCCCCEEeeccCCcccccccccccccccEeeHHHHCCCeEEEEEecCCCCccccccccccccccccccccC--ccee
Confidence            69999999 988777               689999999999999999 9999999999999999999999998  9999


Q ss_pred             EEecCCChHHHHHHHhcC------CCceeccCChHHHHHHHhhcCC-----CCCceEEEEcCCCCCCCccccc
Q 014225          101 FVSSDEDLNAFNNYRACM------PWLAVPYSDLETKKALNRKFDI-----EGIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       101 ~vs~D~~~~~~~~~~~~~------~~~~~~~~d~~~~~~l~~~~~v-----~~~P~~~lid~~~~dG~i~~~~  162 (428)
                      +|+.|.... .+++.+.+      ++..+  +|.+  .++++.||+     ...|+++|||+   +|+|++..
T Consensus        83 ~is~d~~~~-~~~~~~~~~~~~~~~f~ll--~D~~--~~v~~~ygv~~~~~~~~r~~fvID~---~G~I~~~~  147 (169)
T d2bmxa1          83 GVSIDSEFA-HFQWRAQHNDLKTLPFPML--SDIK--RELSQAAGVLNADGVADRVTFIVDP---NNEIQFVS  147 (169)
T ss_dssp             EEESSCHHH-HHHHHHHCTTGGGCCSCEE--ECTT--SHHHHHHTCBCTTSSBCEEEEEECT---TSBEEEEE
T ss_pred             eccccchhh-hhhhcccccccccceEEEE--eccH--HHHHHHcCCCccCCccceeEEEEcC---CCEEEEEE
Confidence            999987543 33333322      22222  3443  789999998     67899999999   99997653

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=99.67  E-value=1.6e-16  Score=137.33  Aligned_cols=135  Identities=17%  Similarity=0.236  Sum_probs=107.9

Q ss_pred             CCCCccc-C----CCCCceecccccCC-cEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC
Q 014225          205 HDRGYLL-G----HPPDEKVPVSSLVG-KTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD  277 (428)
Q Consensus       205 ~~p~f~l-~----~~g~~~v~l~~~~g-k~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d  277 (428)
                      ++|+|++ +    .+++ +++|++++| |+|||+|| +.|||.|..+++.+++.+++|++.         +++||+||.|
T Consensus         1 kAPdF~l~~~~gd~~~~-~vsL~d~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~---------g~~vigIS~D   70 (170)
T d2h01a1           1 QAPSFKAEAVFGDNTFG-EVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKER---------NVELLGCSVD   70 (170)
T ss_dssp             BCCCCEEEEECTTSCEE-EEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHT---------TEEEEEEESS
T ss_pred             CCCCeEeeeecCCCCcc-EEehHHHCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcC---------CeeEecccCC
Confidence            4899998 3    4445 799999998 88999999 799999999999999999999987         8999999999


Q ss_pred             CCHHHHHHHHhcC------CccccccCCcchhHHHHhcCcC-----ccceEEEECCCCcEEeccccchhhcccccCCCCC
Q 014225          278 RDQTSFESYFGTM------PWLALPFGDPTIKELTKYFDVQ-----GIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFT  346 (428)
Q Consensus       278 ~~~~~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~  346 (428)
                       +....++|..+.      ..+.||++.|....+.+.||+.     ..+++||||++|+|++.....+         + .
T Consensus        71 -~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~~ygv~~~~~~~~R~tfiId~~G~I~~~~~~~~---------~-~  139 (170)
T d2h01a1          71 -SKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVALRAFVLIDKQGVVQHLLVNNL---------A-L  139 (170)
T ss_dssp             -CHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECCEEEEECTTSBEEEEEEGGG---------S-S
T ss_pred             -cHHHHHhHhhhhhhhccccccCCceeEcCccHHHHHhCCccccccceeeeEEEcCCCeEEEEEEecC---------C-C
Confidence             555666666543      2478899999999999999983     4579999999999998753221         1 2


Q ss_pred             hHHHHHHHHHHHHH
Q 014225          347 EAKLEFLEKQMEEE  360 (428)
Q Consensus       347 ~~~~~~L~~~l~~~  360 (428)
                      .+..+++.+.|+++
T Consensus       140 ~~~~~eil~~l~~l  153 (170)
T d2h01a1         140 GRSVDEILRLIDAL  153 (170)
T ss_dssp             GGGHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHh
Confidence            23456777777655

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=99.66  E-value=6.2e-17  Score=139.24  Aligned_cols=117  Identities=14%  Similarity=0.141  Sum_probs=96.3

Q ss_pred             hccCCCCccc-CCCCCceecccccCCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCC
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD  279 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~  279 (428)
                      +|+++|+|+| +.+|+ .++|++++||++||+|| +.|||.|..+++.|++.+++|+           ++.+++||+| +
T Consensus        18 vG~~APdF~L~d~~g~-~v~Lsd~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~-----------~~~vi~iS~d-~   84 (164)
T d1q98a_          18 VGEIVENFILVGNDLA-DVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS-----------NTIVLCISAD-L   84 (164)
T ss_dssp             TTCBCCCCEEECTTSC-EEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST-----------TEEEEEEESS-C
T ss_pred             CCCCCCCcEEECCCCC-EEeehhhCCcEEEEEecCccccCcccHHHHHHHHHHHHhc-----------cceEEeecCC-c
Confidence            6999999999 99999 99999999999999999 5589999999999999988885           5799999998 5


Q ss_pred             HHHHHHHHhcCCccccc-cCCcchhHHHHhcCcC-------c--cceEEEECCCCcEEeccc
Q 014225          280 QTSFESYFGTMPWLALP-FGDPTIKELTKYFDVQ-------G--IPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       280 ~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~v~-------~--~P~~~lid~~G~i~~~~~  331 (428)
                      ....++|....+...++ +..+....+.+.|++.       +  .|++||||++|+|++...
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~Ra~fvID~~G~I~y~~~  146 (164)
T d1q98a_          85 PFAQARFCGAEGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQL  146 (164)
T ss_dssp             HHHHTTCTTTTTCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEE
T ss_pred             HHHHHHHHHHhCCccccccccccchhHHHhhceecccCccccCcccEEEEECCCCEEEEEEE
Confidence            66777777776643333 3333467788888873       2  388999999999998753

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.3e-16  Score=143.07  Aligned_cols=139  Identities=12%  Similarity=0.153  Sum_probs=109.3

Q ss_pred             hhccCCCCccc-CCCCCceecccccCC-cEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC
Q 014225          201 LLTNHDRGYLL-GHPPDEKVPVSSLVG-KTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD  277 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g~~~v~l~~~~g-k~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d  277 (428)
                      ++|+++|+|++ +.+|  +++|+++.| |++||+|| +.|||.|..++..|++.+++|++.         ++++++||+|
T Consensus         2 ~VGd~APdF~l~~~~G--~v~Lsd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~---------g~~v~giS~D   70 (220)
T d1prxa_           2 LLGDVAPNFEANTTVG--RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKR---------NVKLIALSID   70 (220)
T ss_dssp             CTTCBCCCCEEEETTE--EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTT---------TEEEEEEESS
T ss_pred             CCCCCCCCcEeecCCC--CEEeHHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcc---------cceeeccccc
Confidence            47999999999 7776  489999988 89999999 689999999999999999999987         8999999999


Q ss_pred             CC--HHHHHHHHhc------CCccccccCCcchhHHHHhcCcC------------ccceEEEECCCCcEEeccccchhhc
Q 014225          278 RD--QTSFESYFGT------MPWLALPFGDPTIKELTKYFDVQ------------GIPCLVIIGPEGKTVTKQGRNLINL  337 (428)
Q Consensus       278 ~~--~~~~~~~~~~------~~~~~~~~~~d~~~~~~~~~~v~------------~~P~~~lid~~G~i~~~~~~~~~~~  337 (428)
                      ..  ...|.+....      ..-+.||++.|.+.++++.||+-            ..+++||||++|+|++.....+   
T Consensus        71 s~~sh~~~~~~~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~~~~~~---  147 (220)
T d1prxa_          71 SVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPA---  147 (220)
T ss_dssp             CHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCT---
T ss_pred             cccchhhhhhhhhhccccccccCcccccccCcccHHHHHhCCccccccccccceeeeEEEEEEcCccceeEEEEecC---
Confidence            52  3344443331      12478999999999999999984            4578999999999988743222   


Q ss_pred             ccccCCCCChHHHHHHHHHHHHH
Q 014225          338 YQENAYPFTEAKLEFLEKQMEEE  360 (428)
Q Consensus       338 ~g~~~~p~~~~~~~~L~~~l~~~  360 (428)
                             ...+.++|+.+.|+.+
T Consensus       148 -------~~gR~~dEiLr~l~al  163 (220)
T d1prxa_         148 -------TTGRNFDEILRVVISL  163 (220)
T ss_dssp             -------TBCCCHHHHHHHHHHH
T ss_pred             -------CcccchHHHHHHHHHH
Confidence                   1223456666666654

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.64  E-value=6e-16  Score=134.07  Aligned_cols=125  Identities=17%  Similarity=0.260  Sum_probs=97.0

Q ss_pred             ccccccccccCc-cccCCCCEEecccCCCCEEEEEEecCCCh-hhhhhHHHHHHHHHHHhcCCCcEEEEEEecCC---Ch
Q 014225           34 FSSLLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFSANWYP-PCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE---DL  108 (428)
Q Consensus        34 ~~~~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~---~~  108 (428)
                      +...++..+|+| |++.+|+++++++++||++||+||.+||+ .|...++.|+++++++++.+.++.+++|++|.   +.
T Consensus         3 ~~~p~~~~~p~F~l~d~~G~~vsl~d~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiDp~~Dtp   82 (172)
T d1xzoa1           3 IKDPLNYEVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKP   82 (172)
T ss_dssp             CCSCCCEECCCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCH
T ss_pred             ccCCCCCcCCCeEEEcCCCCEEcHHHhCCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccccccchH
Confidence            344567889999 99999999999999999999999999997 79999999999999998877789999999983   45


Q ss_pred             HHHHHHHhcCC-----CceeccCChH-HHHHHHhhcCC-----------CCCceEEEEcCCCCCCCcccc
Q 014225          109 NAFNNYRACMP-----WLAVPYSDLE-TKKALNRKFDI-----------EGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       109 ~~~~~~~~~~~-----~~~~~~~d~~-~~~~l~~~~~v-----------~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.+++|.+.++     |..+...+.. ......+.|++           ...|.++|||+   +|+++..
T Consensus        83 ~~l~~y~~~~~~~~~~w~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~---~G~i~~~  149 (172)
T d1xzoa1          83 KQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGP---DGKVLKD  149 (172)
T ss_dssp             HHHHHHHTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECT---TSEEEEE
T ss_pred             HHHHHHHHHhccccccceeeccchHHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcC---CCeEEEE
Confidence            77888888764     3333332222 11223344433           23478999999   9988743

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=99.64  E-value=1.7e-16  Score=137.21  Aligned_cols=117  Identities=16%  Similarity=0.270  Sum_probs=93.2

Q ss_pred             cccccccCc-cccCCC-----CEEecccCCCC-EEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCCh
Q 014225           37 LLASKDRDY-LLNQHG-----TQVKVSDLEGK-VTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL  108 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G-----~~v~l~~~~gk-~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~  108 (428)
                      ++|..|||| |.+.+|     +.++|++++|| +|+|+|| +.|||.|..+++.+++.++++++.|  +++++||.|...
T Consensus         2 lVG~~APdF~l~~~~g~~~~~~~~~Lsd~~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g--~~Vvgis~d~~~   79 (170)
T d1zofa1           2 VVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKG--FNVIGVSIDSEQ   79 (170)
T ss_dssp             CTTSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTT--EEEEEEESSCHH
T ss_pred             CCCCcCCCcCcccccCCCccceEEEeHHHcCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCC--eeEecccccchh
Confidence            579999999 998887     47999999996 8999999 9999999999999999999999998  999999998664


Q ss_pred             HHHHHHHhcC---C---Cceec-cCChHHHHHHHhhcCCC-----CCceEEEEcCCCCCCCcccc
Q 014225          109 NAFNNYRACM---P---WLAVP-YSDLETKKALNRKFDIE-----GIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       109 ~~~~~~~~~~---~---~~~~~-~~d~~~~~~l~~~~~v~-----~~P~~~lid~~~~dG~i~~~  161 (428)
                      . .++|.+..   .   .+.++ .+|.+  ..+.+.||+.     ..|+++|||+   +|+|++.
T Consensus        80 ~-~~~~~~~~~~~~~~~~~~~~~l~D~~--~~v~~~ygv~~~~~~~~r~tfvID~---~G~I~~~  138 (170)
T d1zofa1          80 V-HFAWKNTPVEKGGIGQVSFPMVADIT--KSISRDYDVLFEEAIALRGAFLIDK---NMKVRHA  138 (170)
T ss_dssp             H-HHHHHTSCGGGTCCCCCSSCEEECTT--SHHHHHTTCEETTTEECEEEEEEET---TTEEEEE
T ss_pred             h-HHHHHhhhhhcccccCcccccccccc--cHHHHHcCCCccccceeEEEEEEcC---CCeEEEE
Confidence            3 33333322   1   11122 22443  7999999983     5789999999   9999765

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.63  E-value=2.6e-16  Score=140.46  Aligned_cols=139  Identities=12%  Similarity=0.135  Sum_probs=107.6

Q ss_pred             hccCCCCccc-CCCCCceeccccc-CCcEEEEEEe-ccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC
Q 014225          202 LTNHDRGYLL-GHPPDEKVPVSSL-VGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR  278 (428)
Q Consensus       202 ~g~~~p~f~l-~~~g~~~v~l~~~-~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~  278 (428)
                      +|+++|+|++ +.++.+.++++++ .||++||+|| +.|||.|..++..+++.+.+|++.         +++|++||+| 
T Consensus         4 iGd~aPdF~l~~~~~~g~i~l~d~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~---------~~~vigiS~D-   73 (219)
T d1xcca_           4 LGATFPNFTAKASGIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKL---------NCKLIGFSCN-   73 (219)
T ss_dssp             TTCBCCCCEECBTTCSSCEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTT---------TEEEEEEESS-
T ss_pred             CCCCCCCcEeeccCCCCcEEeHHHcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhccc---------ceEEEeecCc-
Confidence            6999999999 5544336899995 7899999999 789999999999999999999987         8999999999 


Q ss_pred             CHHHHHHHHhc------CCccccccCCcchhHHHHhcCcC------------ccceEEEECCCCcEEeccccchhhcccc
Q 014225          279 DQTSFESYFGT------MPWLALPFGDPTIKELTKYFDVQ------------GIPCLVIIGPEGKTVTKQGRNLINLYQE  340 (428)
Q Consensus       279 ~~~~~~~~~~~------~~~~~~~~~~d~~~~~~~~~~v~------------~~P~~~lid~~G~i~~~~~~~~~~~~g~  340 (428)
                      +.....+|...      ..-+.||++.|.+..+++.||+-            ...++||||++|+|+.......      
T Consensus        74 s~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~~~~~~------  147 (219)
T d1xcca_          74 SKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPA------  147 (219)
T ss_dssp             CHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECT------
T ss_pred             cHhHHhHHhhhhHhhcccCCCCcccccccccHHHHHhCCcccccccCcccceeeeeeEEEcCcceEEEEEEeCC------
Confidence            44444444433      23488999999999999999982            2368999999999987642211      


Q ss_pred             cCCCCChHHHHHHHHHHHHH
Q 014225          341 NAYPFTEAKLEFLEKQMEEE  360 (428)
Q Consensus       341 ~~~p~~~~~~~~L~~~l~~~  360 (428)
                          ...+.++++.+.|+.+
T Consensus       148 ----~~gr~~~EiLr~l~aL  163 (219)
T d1xcca_         148 ----TTGRNAHEILRVLKSL  163 (219)
T ss_dssp             ----TBCCCHHHHHHHHHHH
T ss_pred             ----CcccCHHHHHHHHHHH
Confidence                1223456666666554

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=2e-16  Score=134.92  Aligned_cols=115  Identities=14%  Similarity=0.192  Sum_probs=93.0

Q ss_pred             ccccccCc-cccCCCCEEecccC--CCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHH
Q 014225           38 LASKDRDY-LLNQHGTQVKVSDL--EGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNN  113 (428)
Q Consensus        38 ~g~~~pdf-l~~~~G~~v~l~~~--~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~  113 (428)
                      +|+.+||| |.+.+|++++|+++  +|++|+++|| ++|||+|..+++.+++.+++|++.   +.+++||.| +.+..++
T Consensus         7 vG~~aP~f~L~~~~g~~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~---~~~~~is~d-~~~~~~~   82 (156)
T d2a4va1           7 IGDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEY---AAVFGLSAD-SVTSQKK   82 (156)
T ss_dssp             TTCBCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTT---CEEEEEESC-CHHHHHH
T ss_pred             CCCCCCCeEEECCCCCEEeeHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhhc---cceeeeccc-hhhhHHh
Confidence            69999999 99999999999998  5678888888 899999999999999999999765   678999987 5566888


Q ss_pred             HHhcCCCceeccCChHHHHHHHhhcCCCCCce-----EEEEcCCCCCCCcccc
Q 014225          114 YRACMPWLAVPYSDLETKKALNRKFDIEGIPC-----LVVLQPYDDKDDATLH  161 (428)
Q Consensus       114 ~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~-----~~lid~~~~dG~i~~~  161 (428)
                      |.++++..+...+|.+  ..+.++||+...|.     .++|+.   ||+++.+
T Consensus        83 f~~~~~l~f~~L~D~~--~~v~~~ygv~~~~~~~~~r~~~i~~---dg~i~~~  130 (156)
T d2a4va1          83 FQSKQNLPYHLLSDPK--REFIGLLGAKKTPLSGSIRSHFIFV---DGKLKFK  130 (156)
T ss_dssp             HHHHHTCSSEEEECTT--CHHHHHHTCBSSSSSCBCCEEEEEE---TTEEEEE
T ss_pred             hhcccCccceeccchH--HHHHHHcCCCccccCCeeEEEEEEE---CCeEEEE
Confidence            9988765333334554  79999998865553     555556   8988765

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.61  E-value=7.6e-16  Score=131.44  Aligned_cols=114  Identities=18%  Similarity=0.246  Sum_probs=91.1

Q ss_pred             cccCc-cc---cCCCCEEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHH
Q 014225           41 KDRDY-LL---NQHGTQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYR  115 (428)
Q Consensus        41 ~~pdf-l~---~~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~  115 (428)
                      .|||| |.   +.+|++++|++++||+|+|+|| +.|||.|..+++.++++++++.+.|  .++++||.|.... .+++.
T Consensus         2 ~AP~F~l~~~~~~~~~~vsL~d~~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~--~~vigIS~d~~~~-~~~~~   78 (158)
T d1zyea1           2 HAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVN--CEVVAVSVDSHFS-HLAWI   78 (158)
T ss_dssp             BCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTT--EEEEEEESSCHHH-HHHHH
T ss_pred             CCCCCccceeeCCCccEEeHHHhCCCeEEEEEeehhcCCccccchhhHHHhHHHhhcCC--ceEEeccCcCHHH-HHHHH
Confidence            68999 75   4577799999999999999999 9999999999999999999999988  9999999987643 45555


Q ss_pred             hcC-------CCceeccCChHHHHHHHhhcCCC------CCceEEEEcCCCCCCCccccc
Q 014225          116 ACM-------PWLAVPYSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       116 ~~~-------~~~~~~~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~dG~i~~~~  162 (428)
                      +..       +..+...+|.+  ..+.+.||+.      ..++++|||+   +|+|++..
T Consensus        79 ~~~~~~~~~~~~~f~llsD~~--~~~~~~ygv~~~~~g~~~R~tfvID~---~G~I~~~~  133 (158)
T d1zyea1          79 NTPRKNGGLGHMNIALLSDLT--KQISRDYGVLLEGPGLALRGLFIIDP---NGVIKHLS  133 (158)
T ss_dssp             TSCGGGTCCCSCSSEEEECTT--SHHHHHTTCEETTTTEECEEEEEECT---TSBEEEEE
T ss_pred             hhhHhhccccccccccccccc--cHHHHHHHhccccCCccccEEEEECC---CCEEEEEE
Confidence            432       22222233544  6799999875      4678999999   99998653

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.60  E-value=7.2e-16  Score=135.68  Aligned_cols=117  Identities=18%  Similarity=0.280  Sum_probs=93.0

Q ss_pred             ccccccCc-c----ccCCCCEEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHH
Q 014225           38 LASKDRDY-L----LNQHGTQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAF  111 (428)
Q Consensus        38 ~g~~~pdf-l----~~~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~  111 (428)
                      .+.+|||| +    .+.+|++++|++++||.|||+|| ++||+.|..+++.+++++++|++.|  ++|++||.|.... -
T Consensus         5 ~~~PAPdFtl~a~l~d~~g~~vsLsd~~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g--~~VlgIS~Ds~~s-~   81 (194)
T d1uula_           5 DLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIG--CEVLACSMDSEYS-H   81 (194)
T ss_dssp             TTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTT--EEEEEEESSCHHH-H
T ss_pred             cCCCCCCCcccccccCCCCcEEehHHhCCCeEEEEEEeCCccccchhhhhHHHhhhhhhccCc--eEEEEEecCchhh-h
Confidence            36789999 4    36788899999999999999999 9999999999999999999999988  9999999986542 3


Q ss_pred             HHHHhcC----CC--ceec-cCChHHHHHHHhhcCC------CCCceEEEEcCCCCCCCccccc
Q 014225          112 NNYRACM----PW--LAVP-YSDLETKKALNRKFDI------EGIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       112 ~~~~~~~----~~--~~~~-~~d~~~~~~l~~~~~v------~~~P~~~lid~~~~dG~i~~~~  162 (428)
                      +++.+++    +.  +.+| .+|.+  ..++++||+      ...|+++|||+   +|+|.+..
T Consensus        82 ~~~~~~~~~~~~~~~l~fpllsD~~--~~v~~~ygv~~~~~~~~~R~tfvID~---~G~I~~~~  140 (194)
T d1uula_          82 LAWTSIERKRGGLGQMNIPILADKT--KCIMKSYGVLKEEDGVAYRGLFIIDP---KQNLRQIT  140 (194)
T ss_dssp             HHHHHSCGGGTCCCSCSSCEEECTT--CHHHHHHTCEETTTTEECEEEEEECT---TSBEEEEE
T ss_pred             hhhhhhhhhhccccCCCcceeeCCc--chHHHHcCCeeccCCceEEEEEEECC---CCeEEEEE
Confidence            4444332    11  2222 22443  799999998      35788999999   99997653

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=7.6e-15  Score=124.74  Aligned_cols=136  Identities=17%  Similarity=0.349  Sum_probs=99.3

Q ss_pred             Cccc-CCCCCceecccccCCcEEEEEEeccCCh-hHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC---CHHH
Q 014225          208 GYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCI-PCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR---DQTS  282 (428)
Q Consensus       208 ~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~-~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~---~~~~  282 (428)
                      ||+| |.+|+ ++++++++||++||+||++||| .|....+.+.++.+++...     .....+.++.++.+.   ....
T Consensus         2 dF~L~d~~G~-~vsl~d~~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~   75 (160)
T d1wp0a1           2 PFSLTTHTGE-RKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSI-----TTLPDLTPLFISIDPERDTKEA   75 (160)
T ss_dssp             CCEEEETTSC-EEEGGGGTTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHC-----TTSCCEEEEEEESCTTTCCHHH
T ss_pred             CeEEEcCCCC-EEcHHHhCCCEEEEEEECCCCccccccchHHHHHHHHHhhcc-----cccccccccccccCCCcccHHH
Confidence            6999 99999 9999999999999999999997 7999999999999988764     112456777777764   3445


Q ss_pred             HHHHHhcCC--ccccccCCcchhHHHHhcCcCc---------------cceEEEECCCCcEEeccccchhhcccccCCCC
Q 014225          283 FESYFGTMP--WLALPFGDPTIKELTKYFDVQG---------------IPCLVIIGPEGKTVTKQGRNLINLYQENAYPF  345 (428)
Q Consensus       283 ~~~~~~~~~--~~~~~~~~d~~~~~~~~~~v~~---------------~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~  345 (428)
                      ...+.....  |..++........+...|++..               .+++||||++|+|+.+++..           .
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~~~-----------~  144 (160)
T d1wp0a1          76 IANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQN-----------K  144 (160)
T ss_dssp             HHHHHHTTCTTCEEEECCHHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEETT-----------C
T ss_pred             HHHHHhhcCCCcccccCchHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEECCC-----------C
Confidence            555555443  4444444444556777777543               35789999999999875431           1


Q ss_pred             ChHHHHHHHHHHHHHHhc
Q 014225          346 TEAKLEFLEKQMEEEAKN  363 (428)
Q Consensus       346 ~~~~~~~L~~~l~~~~~~  363 (428)
                      +   .+++.+.|+++|++
T Consensus       145 ~---~~~i~~~I~~~lk~  159 (160)
T d1wp0a1         145 R---KGEIAASIATHMRP  159 (160)
T ss_dssp             C---HHHHHHHHHHHHTT
T ss_pred             C---HHHHHHHHHHHHhc
Confidence            2   25678888888774

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=5e-15  Score=128.84  Aligned_cols=132  Identities=11%  Similarity=0.093  Sum_probs=94.7

Q ss_pred             CCCccc-CCC-CCceecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC-----
Q 014225          206 DRGYLL-GHP-PDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-----  278 (428)
Q Consensus       206 ~p~f~l-~~~-g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~-----  278 (428)
                      .-||++ +.+ |+ .++|++++||+|||.|||+||++|.+..+.|++++++|+++         +++|+++.+++     
T Consensus         3 iydf~~~~l~~g~-~vsL~~ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~---------g~~Il~fP~nqF~~qE   72 (184)
T d2f8aa1           3 VYAFSARPLAGGE-PVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPR---------GLVVLGFPCNQFGHQE   72 (184)
T ss_dssp             GGGCEECBTTCSS-CEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG---------TEEEEEEECCCSTTTT
T ss_pred             eeeeEEEECCCCC-EecHHHcCCCEEEEEEecccCCcchhhhHHHHHhhhhhccc---------ceeEEEeecccccccc
Confidence            347888 876 66 89999999999999999999999999999999999999988         89999999874     


Q ss_pred             --CHHHHHHHHhcC----C-ccccccCC------cchhHHH----Hh--------cCcCccc-----------------e
Q 014225          279 --DQTSFESYFGTM----P-WLALPFGD------PTIKELT----KY--------FDVQGIP-----------------C  316 (428)
Q Consensus       279 --~~~~~~~~~~~~----~-~~~~~~~~------d~~~~~~----~~--------~~v~~~P-----------------~  316 (428)
                        +.+++.++++..    . ...||+..      +....+.    +.        .++.+.|                 +
T Consensus        73 ~~~~~ei~~f~~~~~~~~~~~~~f~~~~ki~VnG~~a~ply~~Lk~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~WNFt  152 (184)
T d2f8aa1          73 NAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFE  152 (184)
T ss_dssp             CSCHHHHHHHHHHTSSCTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTC
T ss_pred             ccchhhhhhhhheeccccccccccccceeeeecCCCCCHHHHHHHhhCCCCccccccccccccccccccccCCCccceEE
Confidence              456788887531    1 13454421      1122222    22        1233334                 7


Q ss_pred             EEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHH
Q 014225          317 LVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEA  361 (428)
Q Consensus       317 ~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~  361 (428)
                      .||||++|+++.+++...           .+   ++|++.|+++|
T Consensus       153 KFLIdr~G~vv~rf~~~~-----------~p---~~i~~~Ie~lL  183 (184)
T d2f8aa1         153 KFLVGPDGVPLRRYSRRF-----------QT---IDIEPDIEALL  183 (184)
T ss_dssp             EEEECTTSCEEEEECTTS-----------CG---GGGHHHHHHHH
T ss_pred             EEEECCCCCEEEEECCCC-----------CH---HHHHHHHHHHh
Confidence            799999999998864321           11   34667777766

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.59  E-value=1.7e-15  Score=121.33  Aligned_cols=77  Identities=27%  Similarity=0.556  Sum_probs=67.2

Q ss_pred             ccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCc
Q 014225          221 VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP  300 (428)
Q Consensus       221 l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d  300 (428)
                      +.+..||+|+|+||++||++|+.+.|.++++++++++.          +.++.|.+|..                     
T Consensus        20 l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~----------~~~~~i~~d~~---------------------   68 (111)
T d1xwaa_          20 LTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN----------VVVLKVDVDEC---------------------   68 (111)
T ss_dssp             HHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT----------EEEEEEETTTC---------------------
T ss_pred             HHhcCCCEEEEEEECCcccCccccchhHHHHhhhcccc----------eEEEEEEeecC---------------------
Confidence            44457899999999999999999999999999998754          78888888865                     


Q ss_pred             chhHHHHhcCcCccceEEEECCCCcEEeccc
Q 014225          301 TIKELTKYFDVQGIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       301 ~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~  331 (428)
                        ..+++.|+|.++||++++ ++|+.+.+..
T Consensus        69 --~~l~~~~~V~~~Pt~~~~-~~G~~v~~~~   96 (111)
T d1xwaa_          69 --EDIAMEYNISSMPTFVFL-KNGVKVEEFA   96 (111)
T ss_dssp             --HHHHHHTTCCSSSEEEEE-ETTEEEEEEE
T ss_pred             --cchhhcCCCccccEEEEE-ECCEEEEEEe
Confidence              678999999999999999 8999888743

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.57  E-value=1.4e-15  Score=130.53  Aligned_cols=117  Identities=16%  Similarity=0.165  Sum_probs=88.5

Q ss_pred             ccccccCc-cccCCCCEEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHH
Q 014225           38 LASKDRDY-LLNQHGTQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYR  115 (428)
Q Consensus        38 ~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~  115 (428)
                      +|+.+|+| |.+.+|++++|++++||+++|.|| +.|||.|..+++.+.+.+++++  +  +.+++|+.|... ..+++.
T Consensus        18 vG~~aPdF~L~~~~g~~vsLsd~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~--~--~~vv~Is~d~~~-~~~~~~   92 (163)
T d1psqa_          18 VGDKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD--N--TVVLTVSMDLPF-AQKRWC   92 (163)
T ss_dssp             TTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCT--T--EEEEEEESSCHH-HHHHHH
T ss_pred             CCCCCCCeEEECCCCCEEehHHhCCcEEEEEeccccccccchhhHHHHHHHHHhhc--c--cceEEEEeccHH-HHHHHH
Confidence            69999999 999999999999999999999998 7899999999999998888774  3  889999887543 244444


Q ss_pred             hcCCCc--eeccCChHHHHHHHhhcCCCC------CceEEEEcCCCCCCCcccccch
Q 014225          116 ACMPWL--AVPYSDLETKKALNRKFDIEG------IPCLVVLQPYDDKDDATLHDGV  164 (428)
Q Consensus       116 ~~~~~~--~~~~~d~~~~~~l~~~~~v~~------~P~~~lid~~~~dG~i~~~~~~  164 (428)
                      ++.+..  .+...+.+  ..+.+.||+..      .++++|||+   +|+|++....
T Consensus        93 ~~~~~~~~~~~~~~~~--~~~~~~ygv~~~~~~~~~Ra~fvID~---~G~I~y~~~~  144 (163)
T d1psqa_          93 GAEGLDNAIMLSDYFD--HSFGRDYALLINEWHLLARAVFVLDT---DNTIRYVEYV  144 (163)
T ss_dssp             HHHTCTTSEEEECTTT--CHHHHHHTCBCTTTCSBCCEEEEECT---TCBEEEEEEC
T ss_pred             HHcCCcceeeeccccc--hhHHHhheeecccccceeEEEEEECC---CCEEEEEEEc
Confidence            443321  11111222  56788888742      236899999   9999876443

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.56  E-value=4.3e-15  Score=134.06  Aligned_cols=117  Identities=16%  Similarity=0.340  Sum_probs=93.7

Q ss_pred             cccccccCc-cccCCCCEEecccC---CCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCCh--H
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSDL---EGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL--N  109 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~~---~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~--~  109 (428)
                      ++|+.+||| |.+.+|+ ++++++   +||.++|+|| +.||+.|..+++.+++++++|+++|  +++++||+|...  .
T Consensus         2 lIGd~aPdF~l~t~~G~-i~~~d~~~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g--~~vigiS~Ds~~sh~   78 (237)
T d2zcta1           2 LIGERFPEMEVTTDHGV-IKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLG--VDLIGLSVDSVFSHI   78 (237)
T ss_dssp             CTTSBCCCEEEEETTEE-EEETHHHHTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTT--EEEEEEESSCHHHHH
T ss_pred             CCCCCCCCeEEEcCCCC-EEechHhhcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCC--cceeeccCCcHHHHH
Confidence            579999999 9999994 777765   8999999998 9999999999999999999999998  999999999743  4


Q ss_pred             HHHHHHhcC--CCceec-cCChHHHHHHHhhcCC-------CCCceEEEEcCCCCCCCcccc
Q 014225          110 AFNNYRACM--PWLAVP-YSDLETKKALNRKFDI-------EGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       110 ~~~~~~~~~--~~~~~~-~~d~~~~~~l~~~~~v-------~~~P~~~lid~~~~dG~i~~~  161 (428)
                      .|.+..+..  ..+.+| .+|.+  ..+++.||+       ...|+++|||+   +|+|...
T Consensus        79 ~w~~~~~~~~~~~l~fpllsD~~--~~vak~yGv~~~~~~~~~~RatFIIDp---dG~Ir~~  135 (237)
T d2zcta1          79 KWKEWIERHIGVRIPFPIIADPQ--GTVARRLGLLHAESATHTVRGVFIVDA---RGVIRTM  135 (237)
T ss_dssp             HHHHHHHHHHCCCCCSCEEECGG--GHHHHHTTCC----CCTTCCEEEEECT---TSBEEEE
T ss_pred             HHhhhhhhhcccccccccccCcc--hHHHHHcCCccccccccceeeeEEECC---CCEEEEE
Confidence            455444421  122233 23444  899999998       46899999999   9988654

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=99.56  E-value=1.5e-15  Score=130.47  Aligned_cols=118  Identities=14%  Similarity=0.172  Sum_probs=92.2

Q ss_pred             cccccccCc-cccCCCCEEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHH
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNY  114 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~  114 (428)
                      .+|+.+||| |.+.+|++++|++++||+++|+|| +.||+.|..+++.|++.+++++  +  +.+++||.|... ..+++
T Consensus        17 ~vG~~APdF~L~d~~g~~v~Lsd~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~--~--~~vi~iS~d~~~-~~~~~   91 (164)
T d1q98a_          17 QVGEIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS--N--TIVLCISADLPF-AQARF   91 (164)
T ss_dssp             CTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST--T--EEEEEEESSCHH-HHTTC
T ss_pred             CCCCCCCCcEEECCCCCEEeehhhCCcEEEEEecCccccCcccHHHHHHHHHHHHhc--c--ceEEeecCCcHH-HHHHH
Confidence            379999999 999999999999999999999999 5688889999999999999995  3  889999997554 46677


Q ss_pred             HhcCCCce-eccCChHHHHHHHhhcCCC-------C--CceEEEEcCCCCCCCcccccc
Q 014225          115 RACMPWLA-VPYSDLETKKALNRKFDIE-------G--IPCLVVLQPYDDKDDATLHDG  163 (428)
Q Consensus       115 ~~~~~~~~-~~~~d~~~~~~l~~~~~v~-------~--~P~~~lid~~~~dG~i~~~~~  163 (428)
                      .+.++... ..+.+. ....+.+.|++.       +  .|+++|||+   +|+|++...
T Consensus        92 ~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~g~~~Ra~fvID~---~G~I~y~~~  146 (164)
T d1q98a_          92 CGAEGIENAKTVSTF-RNHALHSQLGVDIQTGPLAGLTSRAVIVLDE---QNNVLHSQL  146 (164)
T ss_dssp             TTTTTCTTEEEEECT-TCTHHHHHTTCEECSSTTTTSBCCEEEEECT---TSBEEEEEE
T ss_pred             HHHhCCccccccccc-cchhHHHhhceecccCccccCcccEEEEECC---CCEEEEEEE
Confidence            66665432 222221 115677777752       2  378999999   999987643

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.56  E-value=1.8e-15  Score=130.14  Aligned_cols=117  Identities=15%  Similarity=0.171  Sum_probs=84.2

Q ss_pred             cccccccCc-cccCCCCEEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHH
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNY  114 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~  114 (428)
                      .+|+.+|+| |.+.+|++++|++++||++||+|| +.|||.|..+++.|++.+   .+.|  +++++|+.|... ..+++
T Consensus        18 ~iG~~aP~F~L~~~~g~~v~L~d~~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~---~~~g--~~vv~Is~d~~~-~~~~~   91 (166)
T d1xvqa_          18 AVGSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERA---AASG--ATVLCVSKDLPF-AQKRF   91 (166)
T ss_dssp             CTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHH---HHTT--CEEEEEESSCHH-HHTTC
T ss_pred             CCcCCCCCeEEECCCCCEEehHHhCCcEEEEEeeecccccccHHHHHHHhhhc---cccc--ccccccccchHH-HHHHH
Confidence            479999999 999999999999999999999999 558888999998876654   4455  889999987543 46666


Q ss_pred             HhcCCCceec-cCChHHHHHHHhhcCCC---------CCceEEEEcCCCCCCCcccccch
Q 014225          115 RACMPWLAVP-YSDLETKKALNRKFDIE---------GIPCLVVLQPYDDKDDATLHDGV  164 (428)
Q Consensus       115 ~~~~~~~~~~-~~d~~~~~~l~~~~~v~---------~~P~~~lid~~~~dG~i~~~~~~  164 (428)
                      .+++...+.. ..+..  ..+.+.|++.         ..|+++|||+   +|+|++....
T Consensus        92 ~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~g~~~ra~fvID~---~G~I~y~~~~  146 (166)
T d1xvqa_          92 CGAEGTENVMPASAFR--DSFGEDYGVTIADGPMAGLLARAIVVIGA---DGNVAYTELV  146 (166)
T ss_dssp             C------CEEEEECTT--SSHHHHTTCBBCSSTTTTSBCSEEEEECT---TSBEEEEEEC
T ss_pred             HHHhCCcccccccchh--HHHHHHhCeeeccCcccCceeeEEEEEeC---CCEEEEEEEc
Confidence            6655532222 11221  4556666652         2468999999   9999876443

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.56  E-value=7.8e-15  Score=116.57  Aligned_cols=89  Identities=20%  Similarity=0.360  Sum_probs=72.4

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+|+|+|+|||+||++|+.+.|.+.++..++..+          +.++.|++|..                       .+
T Consensus        18 s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~----------~~~~~vd~d~~-----------------------~~   64 (107)
T d1dbya_          18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK----------LKCVKLNTDES-----------------------PN   64 (107)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT----------CEEEEEETTTC-----------------------HH
T ss_pred             CCCcEEEEEECCCCCCccccChHHHHHHHhhccc----------ceEEEEecccc-----------------------hh
Confidence            3689999999999999999999999998887654          78999998866                       67


Q ss_pred             HHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHH
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEA  361 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~  361 (428)
                      +++.|+|+++||++++ ++|+.+.+..|       .    .+   .++|.+.|++.|
T Consensus        65 l~~~~~V~~~Pt~~~~-~~G~~v~~~~G-------~----~~---~~~l~~~i~~~L  106 (107)
T d1dbya_          65 VASEYGIRSIPTIMVF-KGGKKCETIIG-------A----VP---KATIVQTVEKYL  106 (107)
T ss_dssp             HHHHHTCCSSCEEEEE-SSSSEEEEEES-------C----CC---HHHHHHHHHHHC
T ss_pred             HHHHhcccceEEEEEE-ECCeEEEEEeC-------C----CC---HHHHHHHHHHhh
Confidence            9999999999999999 68999887432       1    12   256677776654

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.55  E-value=4.5e-15  Score=117.56  Aligned_cols=73  Identities=27%  Similarity=0.458  Sum_probs=65.0

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+|+++|+|||+||++|+.+.|.+.++.++++++          +.++.|++|..                       ..
T Consensus        16 ~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~----------~~~~~vd~~~~-----------------------~~   62 (105)
T d1nw2a_          16 GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK----------VTVAKLNVDEN-----------------------PE   62 (105)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT----------CEEEEEETTTC-----------------------HH
T ss_pred             CCCcEEEEEECCCCCCcccccchhhhhhhhcCCc----------eEEEEEECCCC-----------------------cc
Confidence            3589999999999999999999999999998754          88999998866                       67


Q ss_pred             HHHhcCcCccceEEEECCCCcEEeccc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~~  331 (428)
                      +++.|+|.++||++++ ++|+.+.+..
T Consensus        63 ~~~~~~V~~~Pt~~~~-~~G~~~~~~~   88 (105)
T d1nw2a_          63 TTSQFGIMSIPTLILF-KGGEPVKQLI   88 (105)
T ss_dssp             HHHHTTCCBSSEEEEE-ETTEEEEEEE
T ss_pred             cHHHCCcceeeEEEEE-ECCEEEEEEE
Confidence            8999999999999999 7899887743

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.55  E-value=3.1e-15  Score=130.51  Aligned_cols=118  Identities=25%  Similarity=0.345  Sum_probs=93.6

Q ss_pred             ccccccccCc-ccc-CCCC--EEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHH
Q 014225           36 SLLASKDRDY-LLN-QHGT--QVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNA  110 (428)
Q Consensus        36 ~~~g~~~pdf-l~~-~~G~--~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~  110 (428)
                      |++|.++||| +.+ .+|+  +++|++++||.++|+|| +.||+.|..+++.+++.+++|++.+  +++++||.|... +
T Consensus         1 ~lIg~~aP~F~~~a~~~g~~~~vsLsd~kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~--~~v~gIS~Ds~~-s   77 (186)
T d1n8ja_           1 SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLG--VDVYSVSTDTHF-T   77 (186)
T ss_dssp             CCTTCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTT--EEEEEEESSCHH-H
T ss_pred             CCCCCcCCCCEeeeeeCCeeEEEeHHHhCCCeEEEEEEeccCCCccHHHHHHHHHhhhhccccc--EEEEeccccCHH-H
Confidence            5789999999 765 3554  78999999999999999 8899999999999999999999987  999999998643 3


Q ss_pred             HHHHHhcCC---Cceec-cCChHHHHHHHhhcCCC------CCceEEEEcCCCCCCCcccc
Q 014225          111 FNNYRACMP---WLAVP-YSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       111 ~~~~~~~~~---~~~~~-~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~dG~i~~~  161 (428)
                      -++|.+++.   .+.+| .+|.+  ..+++.||+.      ..|+++|||+   +|+|...
T Consensus        78 h~~f~~~~~~~~~~~fpllsD~~--~~v~~~yGv~~~~~g~~~r~tfiID~---~G~Ir~~  133 (186)
T d1n8ja_          78 HKAWHSSSETIAKIKYAMIGDPT--GALTRNFDNMREDEGLADRATFVVDP---QGIIQAI  133 (186)
T ss_dssp             HHHHHHHCTTGGGCCSEEEECTT--SHHHHHTTCEETTTTEECEEEEEECT---TSBEEEE
T ss_pred             HHHHhccccccccccccccccHH--HHHHHHhCCCcccCCcceeeEEEECc---hheEEEE
Confidence            445554432   12222 23444  8999999983      4688999999   9988755

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=1.9e-14  Score=114.43  Aligned_cols=88  Identities=19%  Similarity=0.426  Sum_probs=71.7

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      +++|+|+|||+||++|+.+.|.+.+++.++..          ++.++.+.+|.+                       ..+
T Consensus        20 ~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~----------~~~~~~vd~d~~-----------------------~~l   66 (108)
T d2trxa_          20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQG----------KLTVAKLNIDQN-----------------------PGT   66 (108)
T ss_dssp             SSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT----------TEEEEEEETTTC-----------------------TTH
T ss_pred             CCcEEEEEECCCCCCccccCcHHHHHHHHhhc----------ceeeeeccccch-----------------------hhH
Confidence            58999999999999999999999999887764          488888888865                       678


Q ss_pred             HHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHH
Q 014225          306 TKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEA  361 (428)
Q Consensus       306 ~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~  361 (428)
                      +..|+|.++||++++ ++|+.+.+..|       .    .+   .+.|.+.|++.|
T Consensus        67 ~~~~~v~~~PT~~~~-~~G~~v~~~~G-------~----~~---~~~l~~~i~~~L  107 (108)
T d2trxa_          67 APKYGIRGIPTLLLF-KNGEVAATKVG-------A----LS---KGQLKEFLDANL  107 (108)
T ss_dssp             HHHTTCCSSSEEEEE-ETTEEEEEEES-------C----CC---HHHHHHHHHHHH
T ss_pred             HHHhCCCcEEEEEEE-ECCEEEEEEeC-------C----CC---HHHHHHHHHHhc
Confidence            999999999999999 79998887433       1    12   356677777665

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.54  E-value=1.3e-14  Score=116.35  Aligned_cols=88  Identities=19%  Similarity=0.354  Sum_probs=72.3

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+|||+||++|+++.|.|.++.+++.           ++.++.|++|..                       .+
T Consensus        25 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-----------~v~~~~vd~d~~-----------------------~~   70 (113)
T d1r26a_          25 EDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-----------TVKFAKVDADNN-----------------------SE   70 (113)
T ss_dssp             SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-----------TSEEEEEETTTC-----------------------HH
T ss_pred             CCCeEEEEEECCCCccchhhceeccccccccc-----------cccccccccccc-----------------------hh
Confidence            35789999999999999999999999998874           578999998865                       67


Q ss_pred             HHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHh
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAK  362 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~  362 (428)
                      +++.|+|.++||++++ ++|+.+.+..       |.     .+   +.+.+.|+++++
T Consensus        71 l~~~~~V~~~Pt~~~~-~~G~~v~~~~-------G~-----~~---~~l~~~l~~~ik  112 (113)
T d1r26a_          71 IVSKCRVLQLPTFIIA-RSGKMLGHVI-------GA-----NP---GMLRQKLRDIIK  112 (113)
T ss_dssp             HHHHTTCCSSSEEEEE-ETTEEEEEEE-------SS-----CH---HHHHHHHHHHHH
T ss_pred             hHHHccccCCCEEEEE-ECCEEEEEEe-------CC-----CH---HHHHHHHHHHhc
Confidence            9999999999999999 8999998743       31     11   456677776665

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.53  E-value=1.3e-14  Score=116.35  Aligned_cols=89  Identities=16%  Similarity=0.308  Sum_probs=73.4

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+|+|+|+||++||++|+.+.|.|+++++++.++          +.++.|++|.+                       ..
T Consensus        23 ~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~----------v~~~~vd~d~~-----------------------~~   69 (112)
T d1ep7a_          23 EHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGK----------VIFLKVDVDAV-----------------------AA   69 (112)
T ss_dssp             HTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT----------SEEEEEETTTT-----------------------HH
T ss_pred             cCCeEEEEEEcCCcCCCcccchhhhhhhhcccce----------EEEEEeecccc-----------------------cc
Confidence            4688999999999999999999999999988654          78898988865                       67


Q ss_pred             HHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHh
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAK  362 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~  362 (428)
                      ++++|+|+++||++++ ++|+.+.+..+       .     +   .++|.+.|++.++
T Consensus        70 l~~~~~v~~~Pt~~~~-~~G~~v~~~~G-------~-----~---~~~l~~~i~k~~a  111 (112)
T d1ep7a_          70 VAEAAGITAMPTFHVY-KDGVKADDLVG-------A-----S---QDKLKALVAKHAA  111 (112)
T ss_dssp             HHHHHTCCBSSEEEEE-ETTEEEEEEES-------C-----C---HHHHHHHHHHHHC
T ss_pred             ccccccccCCCEEEEE-ECCEEEEEEeC-------c-----C---HHHHHHHHHHHhC
Confidence            8999999999999999 89999887432       1     1   3567777776653

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1e-14  Score=115.52  Aligned_cols=72  Identities=25%  Similarity=0.438  Sum_probs=62.4

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+|+|+|+|||+||++|+.+.|.|.++.+++.           ++.++.|.+|.+                       .+
T Consensus        19 ~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~-----------~~~~~~vd~d~~-----------------------~~   64 (105)
T d2ifqa1          19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-----------NVIFLEVDVDDC-----------------------QD   64 (105)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEETTTC-----------------------HH
T ss_pred             CCCEEEEEEEcCCccchhhhhhhhhhhccccc-----------cceeeecccccC-----------------------Hh
Confidence            35889999999999999999999999988775           356777887765                       67


Q ss_pred             HHHhcCcCccceEEEECCCCcEEeccc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~~  331 (428)
                      +++.|+|+++||++++ ++|+.+.+..
T Consensus        65 ~~~~~~V~~~Pt~~~~-~~G~~v~~~~   90 (105)
T d2ifqa1          65 VASECEVKCMPTFQFF-KKGQKVGEFS   90 (105)
T ss_dssp             HHHHTTCCBSSEEEEE-ETTEEEEEEE
T ss_pred             HHHHcCceEEEEEEEE-ECCEEEEEEe
Confidence            8999999999999999 8999998743

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.53  E-value=1.7e-14  Score=113.86  Aligned_cols=72  Identities=19%  Similarity=0.408  Sum_probs=63.8

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      +++++|+||++||++|+.+.|.+.++.+++.++          +.++.|++|.+                       ..+
T Consensus        17 ~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~----------~~~~~v~~d~~-----------------------~~l   63 (104)
T d1fb6a_          17 EVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK----------IAVYKLNTDEA-----------------------PGI   63 (104)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT----------CEEEEEETTTC-----------------------HHH
T ss_pred             CCcEEEEEEcCccCCccccCchhHHHHHhhcCc----------cceeEEecccc-----------------------hhh
Confidence            578999999999999999999999999998765          67888888866                       679


Q ss_pred             HHhcCcCccceEEEECCCCcEEeccc
Q 014225          306 TKYFDVQGIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       306 ~~~~~v~~~P~~~lid~~G~i~~~~~  331 (428)
                      ++.|+|+++||++++ ++|+.+.+..
T Consensus        64 ~~~~~V~~~Pt~~~~-~~G~~v~~~~   88 (104)
T d1fb6a_          64 ATQYNIRSIPTVLFF-KNGERKESII   88 (104)
T ss_dssp             HHHTTCCSSSEEEEE-ETTEEEEEEE
T ss_pred             hhhcceeeeeEEEEE-EcCeEEEEEe
Confidence            999999999999999 7999988743

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.53  E-value=2.3e-14  Score=114.05  Aligned_cols=88  Identities=20%  Similarity=0.405  Sum_probs=72.1

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      +++++|.||++||++|+++.|.|.++..++.+.          +.++.|++|.+                       ..+
T Consensus        20 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~----------~~~~~vd~d~~-----------------------~~l   66 (108)
T d1thxa_          20 EQPVLVYFWASWCGPCQLMSPLINLAANTYSDR----------LKVVKLEIDPN-----------------------PTT   66 (108)
T ss_dssp             SSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT----------CEEEEEESTTC-----------------------HHH
T ss_pred             CCcEEEEEECCCCCCccccchHHHHHHHhcCCc----------ceeceeccccc-----------------------HHH
Confidence            478999999999999999999999999888754          78999998865                       678


Q ss_pred             HHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHH
Q 014225          306 TKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEA  361 (428)
Q Consensus       306 ~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~  361 (428)
                      ++.|+|+++||++++ ++|+.+.+..|       .    .+   .++|.+.|++.|
T Consensus        67 ~~~~~I~~~Pt~~~~-~~g~~v~~~~G-------~----~~---~~~l~~~i~~~L  107 (108)
T d1thxa_          67 VKKYKVEGVPALRLV-KGEQILDSTEG-------V----IS---KDKLLSFLDTHL  107 (108)
T ss_dssp             HHHTTCCSSSEEEEE-ETTEEEEEEES-------C----CC---HHHHHHHHHHHH
T ss_pred             HHHhcccCCCEEEEE-ECCEEEEEEeC-------C----CC---HHHHHHHHHHhc
Confidence            999999999999999 68998877433       1    22   356677777654

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.52  E-value=1.9e-14  Score=115.64  Aligned_cols=72  Identities=26%  Similarity=0.487  Sum_probs=62.6

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+|||+||++|+.+.|.|.++.+.|.           ++.++.|.+|..                       ..
T Consensus        27 ~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~-----------~~~~~~vd~~~~-----------------------~~   72 (114)
T d1xfla_          27 SKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-----------NVLFLKVDTDEL-----------------------KS   72 (114)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS-----------SEEEEEEETTTS-----------------------HH
T ss_pred             cCCeEEEEEEcCCCCCccccccchhhhccccc-----------ccceeEEEeeec-----------------------ee
Confidence            36889999999999999999999999988764           577888887755                       67


Q ss_pred             HHHhcCcCccceEEEECCCCcEEeccc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~~  331 (428)
                      +++.|+|+++||++++ ++|+.+.+..
T Consensus        73 l~~~~~V~~~Pt~~~~-~~G~~v~~~~   98 (114)
T d1xfla_          73 VASDWAIQAMPTFMFL-KEGKILDKVV   98 (114)
T ss_dssp             HHHHTTCCSSSEEEEE-ETTEEEEEEE
T ss_pred             eccccceeeeEEEEEE-ECCEEEEEEe
Confidence            8999999999999999 8999988743

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.9e-14  Score=114.28  Aligned_cols=87  Identities=14%  Similarity=0.216  Sum_probs=71.6

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+|+++|+||++||++|+.+.|.|.++++++.           ++.++.|++|..                       ..
T Consensus        20 ~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~-----------~~~f~~vd~d~~-----------------------~~   65 (107)
T d1gh2a_          20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP-----------QAVFLEVDVHQC-----------------------QG   65 (107)
T ss_dssp             TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT-----------TSEEEEEETTTS-----------------------HH
T ss_pred             CCCEEEEEEECCCCCCccccchhhhccccccc-----------cccccccccccc-----------------------hh
Confidence            46889999999999999999999999998875           467888888755                       67


Q ss_pred             HHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHH
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEA  361 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~  361 (428)
                      +++.|+|.++||++++ ++|+.+.+..|       .+        .++|.+.|++.+
T Consensus        66 l~~~~~v~~~Pt~~~~-~~G~~v~~~~G-------~~--------~~~l~~~i~k~l  106 (107)
T d1gh2a_          66 TAATNNISATPTFQFF-RNKVRIDQYQG-------AD--------AVGLEEKIKQHL  106 (107)
T ss_dssp             HHHHTTCCSSSEEEEE-ETTEEEEEEES-------SC--------HHHHHHHHHHHH
T ss_pred             hhhhcCceeceEEEEE-ECCEEEEEEeC-------CC--------HHHHHHHHHHhh
Confidence            8999999999999999 99999987433       21        256777777655

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.1e-14  Score=128.17  Aligned_cols=117  Identities=21%  Similarity=0.284  Sum_probs=94.8

Q ss_pred             cccccccCc-cc---cCCCCEEecccCCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHH
Q 014225           37 LLASKDRDY-LL---NQHGTQVKVSDLEGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAF  111 (428)
Q Consensus        37 ~~g~~~pdf-l~---~~~G~~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~  111 (428)
                      .+|+.|||| |.   +.+|++++|++++||.++|+|| +.||+.|..++..|++++++|++.|  ++|++||.|.... .
T Consensus         6 ~VG~~AP~F~l~~~~d~~~~~v~L~d~~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g--~~vigIS~D~~~~-~   82 (197)
T d1qmva_           6 RIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLG--CEVLGVSVDSQFT-H   82 (197)
T ss_dssp             CTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTT--EEEEEEESSCHHH-H
T ss_pred             cCCCcCCCCCCcceeCCCCcEEeHHHhCCCeEEEEEecccccccchhhhHHHHHHHHHhccCC--cEEEEEecCCHHH-H
Confidence            479999999 74   6678899999999999999999 9999999999999999999999988  9999999987653 3


Q ss_pred             HHHHhcC----C--Cceec-cCChHHHHHHHhhcCCC------CCceEEEEcCCCCCCCcccc
Q 014225          112 NNYRACM----P--WLAVP-YSDLETKKALNRKFDIE------GIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       112 ~~~~~~~----~--~~~~~-~~d~~~~~~l~~~~~v~------~~P~~~lid~~~~dG~i~~~  161 (428)
                      +++.+.+    +  -+.+| .+|.+  ..+++.||+.      ..+++|+||+   +|+|...
T Consensus        83 ~~~~~~~~~~~~~~~~~fpll~D~~--~~va~~ygv~~~~~g~~~R~tfiID~---~g~Ir~~  140 (197)
T d1qmva_          83 LAWINTPRKEGGLGPLNIPLLADVT--RRLSEDYGVLKTDEGIAYRGLFIIDG---KGVLRQI  140 (197)
T ss_dssp             HHHHTSCGGGTCCCSCSSCEEECTT--CHHHHHTTCEETTTTEECEEEEEECT---TSBEEEE
T ss_pred             HhhhcchhhhcCcCCCccceEeccc--hHHHHHhCCCcccCCeeeEEEEEECC---CCcEEEE
Confidence            5555432    1  12222 23443  8899999984      4788999999   9988654

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.52  E-value=2.7e-14  Score=114.61  Aligned_cols=87  Identities=23%  Similarity=0.474  Sum_probs=71.1

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+|+|||+||++||++|+.+.|.|.++.+++.           ++.++.|.+|..                       ..
T Consensus        25 ~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~-----------~~~~~~vd~d~~-----------------------~~   70 (113)
T d1ti3a_          25 SQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-----------NVTFLKVDVDEL-----------------------KA   70 (113)
T ss_dssp             SSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS-----------SEEEEEEETTTC-----------------------HH
T ss_pred             CCCEEEEEEEcCccccchhhhhhhhhhhccCC-----------CceEEeeeeecc-----------------------cc
Confidence            36899999999999999999999999988764           567888888755                       67


Q ss_pred             HHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHH
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEA  361 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~  361 (428)
                      +++.|+|+++||++++ ++|+.+.+..|       .+.        ++|.+.|++.+
T Consensus        71 l~~~~~I~~~Pt~~~~-k~G~~v~~~~G-------~~~--------~~l~~~i~k~a  111 (113)
T d1ti3a_          71 VAEEWNVEAMPTFIFL-KDGKLVDKTVG-------ADK--------DGLPTLVAKHA  111 (113)
T ss_dssp             HHHHHHCSSTTEEEEE-ETTEEEEEEEC-------CCT--------THHHHHHHHHH
T ss_pred             ccccCeecccceEEEE-ECCEEEEEEcC-------CCH--------HHHHHHHHHHh
Confidence            8999999999999999 79999988543       211        45677777654

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.49  E-value=3.7e-14  Score=113.53  Aligned_cols=72  Identities=24%  Similarity=0.445  Sum_probs=62.6

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      +++++|+||++||++|+.+.|.|.++.+++.           ++.++.|++|.+                      ..++
T Consensus        25 ~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~-----------~v~~~~vd~~~~----------------------~~~l   71 (112)
T d1f9ma_          25 DKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL-----------DVIFLKLDCNQE----------------------NKTL   71 (112)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEECSST----------------------THHH
T ss_pred             CCEEEEEEEcCCCcchHHHHHHHhhhccccc-----------cceeeccccccc----------------------chhh
Confidence            4789999999999999999999999998875           467888887643                      2689


Q ss_pred             HHhcCcCccceEEEECCCCcEEeccc
Q 014225          306 TKYFDVQGIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       306 ~~~~~v~~~P~~~lid~~G~i~~~~~  331 (428)
                      ++.|+|+++||++++ ++|+++.+..
T Consensus        72 ~~~~~V~~~Pt~~~~-k~G~~v~~~~   96 (112)
T d1f9ma_          72 AKELGIRVVPTFKIL-KENSVVGEVT   96 (112)
T ss_dssp             HHHHCCSSSSEEEEE-ETTEEEEEEE
T ss_pred             HhheeeccCCEEEEE-ECCEEEEEEe
Confidence            999999999999999 8999998743

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.49  E-value=1.3e-13  Score=109.19  Aligned_cols=79  Identities=14%  Similarity=0.088  Sum_probs=61.3

Q ss_pred             cccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcc
Q 014225          222 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT  301 (428)
Q Consensus       222 ~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~  301 (428)
                      ....+++++++||++||++|+++.|.+.+++.+.....      ...+.++.|+.+..                      
T Consensus        11 ~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~------~~~v~~~~id~~~~----------------------   62 (107)
T d1a8la2          11 RNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAG------KGKILGDMVEAIEY----------------------   62 (107)
T ss_dssp             TTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTT------CCCEEEEEEEGGGC----------------------
T ss_pred             HhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhcc------CCcEEEEEeccccc----------------------
Confidence            34445677888999999999999999999987654330      23577777776644                      


Q ss_pred             hhHHHHhcCcCccceEEEECCCCcEEecc
Q 014225          302 IKELTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       302 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                       .++++.|+|.++||++++ ++|+.+.+.
T Consensus        63 -~~l~~~~~V~~vPTi~i~-~~G~~~~~~   89 (107)
T d1a8la2          63 -PEWADQYNVMAVPKIVIQ-VNGEDRVEF   89 (107)
T ss_dssp             -HHHHHHTTCCSSCEEEEE-ETTEEEEEE
T ss_pred             -cccccccccccceEEEEE-eCCeEEEEE
Confidence             678999999999998665 899988774

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.45  E-value=7e-14  Score=111.73  Aligned_cols=75  Identities=25%  Similarity=0.479  Sum_probs=63.6

Q ss_pred             cccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHH
Q 014225           56 VSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN  135 (428)
Q Consensus        56 l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~  135 (428)
                      +++..||+|+|+|||+||++|+.+.|.++++++++++.   +.++.|..|..                        ..++
T Consensus        20 l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~---~~~~~i~~d~~------------------------~~l~   72 (111)
T d1xwaa_          20 LTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN---VVVLKVDVDEC------------------------EDIA   72 (111)
T ss_dssp             HHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTC------------------------HHHH
T ss_pred             HHhcCCCEEEEEEECCcccCccccchhHHHHhhhcccc---eEEEEEEeecC------------------------cchh
Confidence            45557899999999999999999999999999999875   77777766544                        6788


Q ss_pred             hhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          136 RKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       136 ~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.|+|.++|+++++.    +|+.+.+
T Consensus        73 ~~~~V~~~Pt~~~~~----~G~~v~~   94 (111)
T d1xwaa_          73 MEYNISSMPTFVFLK----NGVKVEE   94 (111)
T ss_dssp             HHTTCCSSSEEEEEE----TTEEEEE
T ss_pred             hcCCCccccEEEEEE----CCEEEEE
Confidence            899999999999986    7877654

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=99.45  E-value=6.3e-14  Score=120.71  Aligned_cols=114  Identities=17%  Similarity=0.244  Sum_probs=89.4

Q ss_pred             cccCc-cc----cCCCCEEecccCCC-CEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHH
Q 014225           41 KDRDY-LL----NQHGTQVKVSDLEG-KVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNN  113 (428)
Q Consensus        41 ~~pdf-l~----~~~G~~v~l~~~~g-k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~  113 (428)
                      +|||| |.    +.+|++++|++++| |+|||+|| +.|||.|..+++.+++.+++|++.|  +++|+||.|.... .++
T Consensus         1 kAPdF~l~~~~gd~~~~~vsL~d~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g--~~vigIS~D~~~~-~~~   77 (170)
T d2h01a1           1 QAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERN--VELLGCSVDSKFT-HLA   77 (170)
T ss_dssp             BCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTT--EEEEEEESSCHHH-HHH
T ss_pred             CCCCeEeeeecCCCCccEEehHHHCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCC--eeEecccCCcHHH-HHh
Confidence            48999 87    45566899999998 78999999 9999999999999999999999998  9999999987643 355


Q ss_pred             HHhcCC-------CceeccCChHHHHHHHhhcCCC-----CCceEEEEcCCCCCCCccccc
Q 014225          114 YRACMP-------WLAVPYSDLETKKALNRKFDIE-----GIPCLVVLQPYDDKDDATLHD  162 (428)
Q Consensus       114 ~~~~~~-------~~~~~~~d~~~~~~l~~~~~v~-----~~P~~~lid~~~~dG~i~~~~  162 (428)
                      +.+++.       ..+...+|.+  ..+.+.||+.     ..+++++||+   +|+|....
T Consensus        78 ~~~~~~~~~~~~~~~f~llsD~~--~~~~~~ygv~~~~~~~~R~tfiId~---~G~I~~~~  133 (170)
T d2h01a1          78 WKKTPLSQGGIGNIKHTLISDIS--KSIARSYDVLFNESVALRAFVLIDK---QGVVQHLL  133 (170)
T ss_dssp             HHTSCGGGTCCCSCSSEEEECTT--SHHHHHTTCEETTTEECCEEEEECT---TSBEEEEE
T ss_pred             HhhhhhhhccccccCCceeEcCc--cHHHHHhCCccccccceeeeEEEcC---CCeEEEEE
Confidence            554321       1111223444  7899999883     4579999999   99887553

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.45  E-value=1.1e-13  Score=109.05  Aligned_cols=71  Identities=21%  Similarity=0.390  Sum_probs=62.1

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      +++++|+||++||++|+.+.|.+.++.+++.           +..++.+++|..                       .++
T Consensus        18 ~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~-----------~~~~~~vd~d~~-----------------------~~~   63 (103)
T d1syra_          18 NELVIVDFFAEWCGPCKRIAPFYEECSKTYT-----------KMVFIKVDVDEV-----------------------SEV   63 (103)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-----------TSEEEEEETTTT-----------------------HHH
T ss_pred             CCcEEEEEeCCcccCcccccccchhhhhccc-----------ceEEEeeccccC-----------------------cce
Confidence            5789999999999999999999999998875           356888888755                       678


Q ss_pred             HHhcCcCccceEEEECCCCcEEeccc
Q 014225          306 TKYFDVQGIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       306 ~~~~~v~~~P~~~lid~~G~i~~~~~  331 (428)
                      ++.|+|.++||++++ ++|+.+.+..
T Consensus        64 ~~~~~V~~~Pt~i~~-k~G~~v~~~~   88 (103)
T d1syra_          64 TEKENITSMPTFKVY-KNGSSVDTLL   88 (103)
T ss_dssp             HHHTTCCSSSEEEEE-ETTEEEEEEE
T ss_pred             eeeeeeecceEEEEE-ECCEEEEEEe
Confidence            999999999999999 8999988743

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=7.3e-14  Score=124.88  Aligned_cols=117  Identities=18%  Similarity=0.285  Sum_probs=92.7

Q ss_pred             cccccccCc-cccCCCCEEecccCCC-CEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCCh--HHH
Q 014225           37 LLASKDRDY-LLNQHGTQVKVSDLEG-KVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL--NAF  111 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~~v~l~~~~g-k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~--~~~  111 (428)
                      ++|+.|||| |.+.+|+ ++|+++.| |.+||+|| +.||+.|..+++.+++.+++|++.|  +++++||.|...  ..|
T Consensus         2 ~VGd~APdF~l~~~~G~-v~Lsd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g--~~v~giS~Ds~~sh~~~   78 (220)
T d1prxa_           2 LLGDVAPNFEANTTVGR-IRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRN--VKLIALSIDSVEDHLAW   78 (220)
T ss_dssp             CTTCBCCCCEEEETTEE-EEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTT--EEEEEEESSCHHHHHHH
T ss_pred             CCCCCCCCcEeecCCCC-EEeHHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhccc--ceeeccccccccchhhh
Confidence            479999999 9999996 99999987 78889888 8999999999999999999999998  999999999743  344


Q ss_pred             HHHHhcC----C--Cceec-cCChHHHHHHHhhcCCC------------CCceEEEEcCCCCCCCcccc
Q 014225          112 NNYRACM----P--WLAVP-YSDLETKKALNRKFDIE------------GIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       112 ~~~~~~~----~--~~~~~-~~d~~~~~~l~~~~~v~------------~~P~~~lid~~~~dG~i~~~  161 (428)
                      .+..+.+    .  -+.+| .+|.+  .+++++||+-            ..++++|||+   +|+|...
T Consensus        79 ~~~~~~~~~~~~~~~l~fpllsD~~--~~va~~ygv~~~~~~~~~~~~~~~RatFIID~---~g~Ir~~  142 (220)
T d1prxa_          79 SKDINAYNSEEPTEKLPFPIIDDRN--RELAILLGMLDPAEKDEKGMPVTARVVFVFGP---DKKLKLS  142 (220)
T ss_dssp             HHHHHHHTTSCCCSCCSSCEEECTT--CHHHHHTTSSCSCTTCSSSCCTTCCEEEEECT---TSBEEEE
T ss_pred             hhhhhhccccccccCcccccccCcc--cHHHHHhCCccccccccccceeeeEEEEEEcC---ccceeEE
Confidence            4433311    0  12222 22443  8999999984            4688999999   9988755

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.45  E-value=6.8e-13  Score=112.84  Aligned_cols=119  Identities=19%  Similarity=0.283  Sum_probs=79.5

Q ss_pred             CCccc-CCCCCceecccccCCcEEEEEEeccCCh-hHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCC---CHH
Q 014225          207 RGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCI-PCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR---DQT  281 (428)
Q Consensus       207 p~f~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~-~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~---~~~  281 (428)
                      +||+| |.+|+ ++++++++||++||+||.+||+ .|......+..+...+....      ...+.++.++.+.   ..+
T Consensus         7 ~dF~l~d~~G~-~vsl~~~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~   79 (169)
T d2b7ka1           7 GPFHLEDMYGN-EFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKY------GITLQPLFITCDPARDSPA   79 (169)
T ss_dssp             CCCEEEETTSC-EEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHH------CCCCEEEEEESCTTTCCHH
T ss_pred             CCeEEEeCCCC-EECHHHHCCCEEEEEEeccccCCcccchhhhhhhhhhhccccc------cccceeeeeccccccCchh
Confidence            68999 99999 9999999999999999999997 57777777777776665441      2356677777654   233


Q ss_pred             HHHHHHhcCC--ccccccCCcchhHHH----------------HhcCcCccceEEEECCCCcEEecccc
Q 014225          282 SFESYFGTMP--WLALPFGDPTIKELT----------------KYFDVQGIPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       282 ~~~~~~~~~~--~~~~~~~~d~~~~~~----------------~~~~v~~~P~~~lid~~G~i~~~~~~  332 (428)
                      ....+.....  |.......+......                ..|.+...|++||||++|+|+.+.+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~~~~  148 (169)
T d2b7ka1          80 VLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGR  148 (169)
T ss_dssp             HHHHHHTTSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEECT
T ss_pred             hhhhhhccccccccccccchhhhhhhhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEEECC
Confidence            3344433322  222222222222222                23446678999999999999987643

>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: C1-like domain
domain: Pdi-like hypothetical protein At1g60420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.44  E-value=2e-14  Score=108.56  Aligned_cols=80  Identities=34%  Similarity=0.683  Sum_probs=72.8

Q ss_pred             cccCCCCChHHHHHHHHHHHHHHhcCCCCcccccc-ccceeeeeccCCCCCcccccccCCCCceeEeccCCCCCCccccc
Q 014225          339 QENAYPFTEAKLEFLEKQMEEEAKNLPRSEFHIGH-RHELNLVSEGTGGGPFICCDCDEQGSGWAYQCLECGYEVHPKCV  417 (428)
Q Consensus       339 g~~~~p~~~~~~~~L~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~c~~C~~~g~~~~~~~~~~~~~~~~~~~  417 (428)
                      |+.+||+|++...++..++.+.-...|..+.+..| .|.|.+.    ....++|+.|++.+.+|.|+|..|+|+||..||
T Consensus         1 ~~~~~~~t~~~~~e~~~~~he~c~~~P~~I~Hp~Hp~H~L~L~----~~~~~~C~~C~~~~~g~~Y~C~~C~f~LH~~CA   76 (89)
T d1v5na_           1 GSSGSSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELT----RVQVYTCDKCEEEGTIWSYHCDECDFDLHAKCA   76 (89)
T ss_dssp             CCCCCCCCSSCCSHHHHHHHHHTSSSCSEECCSTTTTSCEEEE----CCSSCCCTTTSCCCCSCEEECTTTCCCCCHHHH
T ss_pred             CCccCCchHHHHHHHHhhhhHHHhcCCCeecCCCCCCCCeEEe----cCCCCEeCCCCCCcCCcEeEeccCCCEecHHHc
Confidence            56789999999999999999999999999999999 5999994    456789999999999999999999999999999


Q ss_pred             cccCC
Q 014225          418 RAVDR  422 (428)
Q Consensus       418 ~~~~~  422 (428)
                      ...+.
T Consensus        77 ~~P~~   81 (89)
T d1v5na_          77 LNEDT   81 (89)
T ss_dssp             HCSSC
T ss_pred             CCCcc
Confidence            87543

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=8.8e-14  Score=112.12  Aligned_cols=83  Identities=23%  Similarity=0.373  Sum_probs=61.6

Q ss_pred             cccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCC
Q 014225          220 PVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGD  299 (428)
Q Consensus       220 ~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~  299 (428)
                      .+++.+||+++|+|||+||++|+.+.|.+.+..+..+..        .++.++.+.++.+.                   
T Consensus        16 ~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~--------~~~~~~~~~~~~~~-------------------   68 (117)
T d2fwha1          16 ALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKAL--------ADTVLLQANVTAND-------------------   68 (117)
T ss_dssp             HHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHT--------TTSEEEEEECTTCC-------------------
T ss_pred             HHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhc--------cceEEEecccccch-------------------
Confidence            345567999999999999999999999884443332221        24566666665432                   


Q ss_pred             cchhHHHHhcCcCccceEEEECCCCcEEec
Q 014225          300 PTIKELTKYFDVQGIPCLVIIGPEGKTVTK  329 (428)
Q Consensus       300 d~~~~~~~~~~v~~~P~~~lid~~G~i~~~  329 (428)
                      +...++++.|+|.++||++++|++|+++..
T Consensus        69 ~~~~~l~~~~~v~~~Pt~~~~~~~G~~~~~   98 (117)
T d2fwha1          69 AQDVALLKHLNVLGLPTILFFDGQGQEHPQ   98 (117)
T ss_dssp             HHHHHHHHHTTCCSSSEEEEECTTSCBCGG
T ss_pred             hHHHHHHhhhehhhceEEEEEeCCCcEEec
Confidence            224678999999999999999999998753

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.41  E-value=5.3e-14  Score=106.75  Aligned_cols=67  Identities=13%  Similarity=0.269  Sum_probs=55.6

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      +|+.+++|||+||++|+.+.|.+.++.+.+...          +.++.+..|..                       .++
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~----------~~~~~~~~d~~-----------------------~~l   48 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDA----------VEVEYINVMEN-----------------------PQK   48 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSS----------EEEEEEESSSS-----------------------CCT
T ss_pred             CceEEEEEECCCCcChHhhhhhccccccccccc----------ccccccccccc-----------------------ccc
Confidence            588999999999999999999999998887543          67777777654                       568


Q ss_pred             HHhcCcCccceEEEECCCCcE
Q 014225          306 TKYFDVQGIPCLVIIGPEGKT  326 (428)
Q Consensus       306 ~~~~~v~~~P~~~lid~~G~i  326 (428)
                      +++|+|.++||++ ++.+|++
T Consensus        49 a~~~~V~~~Pt~~-i~~~g~~   68 (85)
T d1fo5a_          49 AMEYGIMAVPTIV-INGDVEF   68 (85)
T ss_dssp             TTSTTTCCSSEEE-ETTEEEC
T ss_pred             cccCCceEeeEEE-EECCcEE
Confidence            8999999999975 5677764

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3.9e-13  Score=111.10  Aligned_cols=72  Identities=18%  Similarity=0.276  Sum_probs=63.7

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+|+|+|.|||+||++|+++.|.|.+++++|++.          +.++.|++|..                       .+
T Consensus        21 ~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~----------v~~~~VDvd~~-----------------------~~   67 (137)
T d1qgva_          21 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNF----------AVIYLVDITEV-----------------------PD   67 (137)
T ss_dssp             SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT----------EEEEEEETTTC-----------------------CT
T ss_pred             CCCEEEEEEECCCCccchhcChHHHHHHHHhhcc----------ceEEEeecccc-----------------------ch
Confidence            4689999999999999999999999999999754          88888988865                       67


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      +++.|+|.++||++++ ++|+.+...
T Consensus        68 la~~~~I~~~PT~~~f-~~g~~i~~~   92 (137)
T d1qgva_          68 FNKMYELYDPCTVMFF-FRNKHIMID   92 (137)
T ss_dssp             TTTSSCSCSSCEEEEE-ETTEEEEEE
T ss_pred             hhhhcCeeeEEEEEEE-eCCcEEEEE
Confidence            8999999999999999 888877543

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=4.3e-13  Score=116.42  Aligned_cols=73  Identities=15%  Similarity=0.071  Sum_probs=64.3

Q ss_pred             ccCc-cccCC-CCEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCC-------ChHHHH
Q 014225           42 DRDY-LLNQH-GTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDE-------DLNAFN  112 (428)
Q Consensus        42 ~pdf-l~~~~-G~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~-------~~~~~~  112 (428)
                      .-|| +.+.+ |++++|++++||+|||.|||+||++|....+.|++++++|+++|  ++|+++..++       +.++.+
T Consensus         3 iydf~~~~l~~g~~vsL~~ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g--~~Il~fP~nqF~~qE~~~~~ei~   80 (184)
T d2f8aa1           3 VYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRG--LVVLGFPCNQFGHQENAKNEEIL   80 (184)
T ss_dssp             GGGCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCCSTTTTCSCHHHHH
T ss_pred             eeeeEEEECCCCCEecHHHcCCCEEEEEEecccCCcchhhhHHHHHhhhhhcccc--eeEEEeeccccccccccchhhhh
Confidence            4578 88875 78899999999999999999999999999999999999999998  9999998763       446677


Q ss_pred             HHHh
Q 014225          113 NYRA  116 (428)
Q Consensus       113 ~~~~  116 (428)
                      ++.+
T Consensus        81 ~f~~   84 (184)
T d2f8aa1          81 NSLK   84 (184)
T ss_dssp             HHHH
T ss_pred             hhhh
Confidence            7765

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=7.9e-13  Score=111.91  Aligned_cols=114  Identities=18%  Similarity=0.290  Sum_probs=86.4

Q ss_pred             Cc-cccCCCCEEecccCCCCEEEEEEecCCCh-hhhhhHHHHHHHHHHHhcCCC--cEEEEEEecCC---ChHHHHHHHh
Q 014225           44 DY-LLNQHGTQVKVSDLEGKVTALYFSANWYP-PCGNFTGVLVDVYEELRNNGS--DFEVVFVSSDE---DLNAFNNYRA  116 (428)
Q Consensus        44 df-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~--~~~ii~vs~D~---~~~~~~~~~~  116 (428)
                      || |+|.+|+++++++++||++||+||++||+ .|...++.+.++++++...+.  .+.++.++.+.   ......++..
T Consensus         2 dF~L~d~~G~~vsl~d~~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (160)
T d1wp0a1           2 PFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVK   81 (160)
T ss_dssp             CCEEEETTSCEEEGGGGTTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHHH
T ss_pred             CeEEEcCCCCEEcHHHhCCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHHh
Confidence            79 99999999999999999999999999997 799999999999999877542  35666666653   3355555555


Q ss_pred             cC--CCceeccCChHHHHHHHhhcCCC---------------CCceEEEEcCCCCCCCcccc
Q 014225          117 CM--PWLAVPYSDLETKKALNRKFDIE---------------GIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       117 ~~--~~~~~~~~d~~~~~~l~~~~~v~---------------~~P~~~lid~~~~dG~i~~~  161 (428)
                      ..  +|..+.. +......+.+.|++.               ..++++|||+   +|+++..
T Consensus        82 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~---~G~i~~~  139 (160)
T d1wp0a1          82 EFSPKLVGLTG-TREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGP---DGEFLDY  139 (160)
T ss_dssp             TTCTTCEEEEC-CHHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECT---TSCEEEE
T ss_pred             hcCCCcccccC-chHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECC---CCcEEEE
Confidence            44  4444444 444446777777753               2468899999   9999865

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=9.7e-14  Score=112.21  Aligned_cols=75  Identities=16%  Similarity=0.424  Sum_probs=61.3

Q ss_pred             ccCCCCEEEEEEecC-------CChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChH
Q 014225           57 SDLEGKVTALYFSAN-------WYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLE  129 (428)
Q Consensus        57 ~~~~gk~vlv~F~a~-------wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~  129 (428)
                      ++.+||+|+|+|||+       ||+||+++.|.+.++++.++++   +.++.|++|...+ +              .|..
T Consensus        17 ~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~---~~~~~vdv~~~~~-~--------------~d~~   78 (119)
T d1woua_          17 EQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEG---CVFIYCQVGEKPY-W--------------KDPN   78 (119)
T ss_dssp             HTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTT---EEEEEEECCCHHH-H--------------HCTT
T ss_pred             HHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCc---eEEEEEECCCCcc-c--------------chhh
Confidence            456799999999995       9999999999999999888754   8999998875433 0              0221


Q ss_pred             HHHHHHhhcCCCCCceEEEEcC
Q 014225          130 TKKALNRKFDIEGIPCLVVLQP  151 (428)
Q Consensus       130 ~~~~l~~~~~v~~~P~~~lid~  151 (428)
                        ..+++.|+|.++||+++++.
T Consensus        79 --~~l~~~~~V~~iPT~i~~~~   98 (119)
T d1woua_          79 --NDFRKNLKVTAVPTLLKYGT   98 (119)
T ss_dssp             --CHHHHHHCCCSSSEEEETTS
T ss_pred             --hhHHHhCCeEEEEEEEEEEC
Confidence              67888999999999999995

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.38  E-value=1.4e-13  Score=111.26  Aligned_cols=90  Identities=13%  Similarity=0.154  Sum_probs=63.7

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      ..++|+|.||++|||+|+.+.|.|.++.++|.+.         ++.++.|++|.+                       .+
T Consensus        29 ~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~---------~~~~~~Vd~d~~-----------------------~~   76 (119)
T d2es7a1          29 GDGVILLSSDPRRTPEVSDNPVMIAELLREFPQF---------DWQVAVADLEQS-----------------------EA   76 (119)
T ss_dssp             CSEEEEECCCSCC----CCHHHHHHHHHHTCTTS---------CCEEEEECHHHH-----------------------HH
T ss_pred             CCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCC---------ceEEEEEECCCC-----------------------HH
Confidence            4578999999999999999999999999998754         466666665533                       78


Q ss_pred             HHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHH
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEA  361 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~  361 (428)
                      +++.|+|+++||++++ ++|+.+.+..|       ..    +   .++|.+.|++++
T Consensus        77 l~~~~~V~~~Pt~~~~-~~G~~v~~~~G-------~~----~---~~~l~~~i~~lL  118 (119)
T d2es7a1          77 IGDRFNVRRFPATLVF-TDGKLRGALSG-------IH----P---WAELLTLMRSIV  118 (119)
T ss_dssp             HHHTTTCCSSSEEEEE-SCC----CEES-------CC----C---HHHHHHHHHHHH
T ss_pred             HHHhcCcCcceEEEEE-EcCeEEEEeeC-------CC----C---HHHHHHHHHHHh
Confidence            9999999999999999 89999988543       21    2   255666666654

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.38  E-value=5e-13  Score=105.47  Aligned_cols=71  Identities=24%  Similarity=0.421  Sum_probs=61.8

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+|+++|+|||+||++|+.+.|.+.+++++++++   +.++.|++|..                        ..+++.|+
T Consensus        16 ~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~---~~~~~vd~~~~------------------------~~~~~~~~   68 (105)
T d1nw2a_          16 GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNVDEN------------------------PETTSQFG   68 (105)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---CEEEEEETTTC------------------------HHHHHHTT
T ss_pred             CCCcEEEEEECCCCCCcccccchhhhhhhhcCCc---eEEEEEECCCC------------------------cccHHHCC
Confidence            4689999999999999999999999999999875   88888877654                        67889999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      |.++|+++++.    +|+.+.+
T Consensus        69 V~~~Pt~~~~~----~G~~~~~   86 (105)
T d1nw2a_          69 IMSIPTLILFK----GGEPVKQ   86 (105)
T ss_dssp             CCBSSEEEEEE----TTEEEEE
T ss_pred             cceeeEEEEEE----CCEEEEE
Confidence            99999999997    7877654

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=6.2e-14  Score=115.30  Aligned_cols=93  Identities=10%  Similarity=0.055  Sum_probs=74.8

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++|+|.|||+|||+|+.+.|.|.++.++|.+.         .+.++.|++|.+                       .+
T Consensus        35 ~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~---------~~~~a~Vd~d~~-----------------------~~   82 (132)
T d2hfda1          35 PDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDY---------TWQVAIADLEQS-----------------------EA   82 (132)
T ss_dssp             SEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTS---------CEEEEEECHHHH-----------------------HH
T ss_pred             CCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCC---------cceeEEEEecCC-----------------------HH
Confidence            3478999999999999999999999999998765         466666666533                       78


Q ss_pred             HHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhcC
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNL  364 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~  364 (428)
                      +++.|+|.++||++++ ++|+.+.+..|..           +   .++|.+.|++++...
T Consensus        83 la~~~~V~~~PT~~~~-~~G~~v~~~~G~~-----------~---~~~l~~~i~~ll~~~  127 (132)
T d2hfda1          83 IGDRFGVFRFPATLVF-TGGNYRGVLNGIH-----------P---WAELINLMRGLVEPQ  127 (132)
T ss_dssp             HHHHHTCCSCCEEEEE-ETTEEEEEECCCS-----------C---HHHHHHHHHHHHSCS
T ss_pred             HHHhhccCcceeEEEE-EcCcEeeeecCCC-----------C---HHHHHHHHHHHhCcc
Confidence            9999999999999999 9999998854321           2   367777787777644

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.4e-13  Score=108.98  Aligned_cols=82  Identities=22%  Similarity=0.402  Sum_probs=64.6

Q ss_pred             ccccCCcEEEEEEecc-------CChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCcc
Q 014225          221 VSSLVGKTVGLYFSAR-------WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWL  293 (428)
Q Consensus       221 l~~~~gk~vll~F~a~-------wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~  293 (428)
                      +++.+||+|+|+|||+       ||++|+++.|.+.++++.+++          ++.++.|+++...+            
T Consensus        16 l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~----------~~~~~~vdv~~~~~------------   73 (119)
T d1woua_          16 VEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE----------GCVFIYCQVGEKPY------------   73 (119)
T ss_dssp             HHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT----------TEEEEEEECCCHHH------------
T ss_pred             HHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCC----------ceEEEEEECCCCcc------------
Confidence            3456789999999995       999999999999999887764          48999999874321            


Q ss_pred             ccccCCcchhHHHHhcCcCccceEEEECCCCcEEe
Q 014225          294 ALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVT  328 (428)
Q Consensus       294 ~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~  328 (428)
                          ..|.+..+++.|+|.++||+++++..+++..
T Consensus        74 ----~~d~~~~l~~~~~V~~iPT~i~~~~g~~l~~  104 (119)
T d1woua_          74 ----WKDPNNDFRKNLKVTAVPTLLKYGTPQKLVE  104 (119)
T ss_dssp             ----HHCTTCHHHHHHCCCSSSEEEETTSSCEEEG
T ss_pred             ----cchhhhhHHHhCCeEEEEEEEEEECCeEEee
Confidence                1123467899999999999999966656654

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.37  E-value=6e-13  Score=105.41  Aligned_cols=71  Identities=20%  Similarity=0.413  Sum_probs=61.4

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+|+|+|+|||+||++|+.+.|.+.++.+++.+.   +.++.|++|..                        ..+++.|+
T Consensus        18 s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~d~~------------------------~~l~~~~~   70 (107)
T d1dbya_          18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK---LKCVKLNTDES------------------------PNVASEYG   70 (107)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC------------------------HHHHHHHT
T ss_pred             CCCcEEEEEECCCCCCccccChHHHHHHHhhccc---ceEEEEecccc------------------------hhHHHHhc
Confidence            4689999999999999999999999999988765   77887777644                        67889999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      |.++|++++++    +|+.+.+
T Consensus        71 V~~~Pt~~~~~----~G~~v~~   88 (107)
T d1dbya_          71 IRSIPTIMVFK----GGKKCET   88 (107)
T ss_dssp             CCSSCEEEEES----SSSEEEE
T ss_pred             ccceEEEEEEE----CCeEEEE
Confidence            99999999997    7887754

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.37  E-value=2.5e-13  Score=102.99  Aligned_cols=63  Identities=13%  Similarity=0.174  Sum_probs=52.4

Q ss_pred             EEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHh
Q 014225          229 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKY  308 (428)
Q Consensus       229 vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  308 (428)
                      .+..||++||++|+++.|.++++.++|.+          ++.++.|++|.+                       .+++++
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~----------~v~~~~vd~d~~-----------------------~~l~~~   50 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGD----------KIDVEKIDIMVD-----------------------REKAIE   50 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCS----------SCCEEEECTTTC-----------------------GGGGGG
T ss_pred             EEEEEECCCCcchHHHHHHHhhhcccccc----------cccccccccccc-----------------------hhhHHh
Confidence            45669999999999999999999999864          478888888765                       678999


Q ss_pred             cCcCccceEEEECCCCc
Q 014225          309 FDVQGIPCLVIIGPEGK  325 (428)
Q Consensus       309 ~~v~~~P~~~lid~~G~  325 (428)
                      |+|.++||+++ +.+|+
T Consensus        51 ~~V~~~Pt~~~-~~~~~   66 (85)
T d1nhoa_          51 YGLMAVPAIAI-NGVVR   66 (85)
T ss_dssp             TCSSCSSEEEE-TTTEE
T ss_pred             cCceEeCEEEE-CCcEE
Confidence            99999999755 55543

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=9e-13  Score=104.52  Aligned_cols=71  Identities=21%  Similarity=0.477  Sum_probs=60.0

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+|+|+|+|||+||+||+.+.|.+.+++.++..+   +.++.+++|..                        ..+++.|+
T Consensus        19 ~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~---~~~~~vd~d~~------------------------~~l~~~~~   71 (108)
T d2trxa_          19 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQN------------------------PGTAPKYG   71 (108)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTC------------------------TTHHHHTT
T ss_pred             CCCcEEEEEECCCCCCccccCcHHHHHHHHhhcc---eeeeeccccch------------------------hhHHHHhC
Confidence            3689999999999999999999999999887654   88888776644                        56888999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++||++++.    +|+.+.+
T Consensus        72 v~~~PT~~~~~----~G~~v~~   89 (108)
T d2trxa_          72 IRGIPTLLLFK----NGEVAAT   89 (108)
T ss_dssp             CCSSSEEEEEE----TTEEEEE
T ss_pred             CCcEEEEEEEE----CCEEEEE
Confidence            99999998886    7877654

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.34  E-value=1e-12  Score=104.23  Aligned_cols=70  Identities=20%  Similarity=0.437  Sum_probs=60.8

Q ss_pred             CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225           61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI  140 (428)
Q Consensus        61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v  140 (428)
                      +|+++|.|||+||++|+.+.|.+.++++++++.   +.++.|++|..                        ..+++.|+|
T Consensus        20 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~d~~------------------------~~l~~~~~I   72 (108)
T d1thxa_          20 EQPVLVYFWASWCGPCQLMSPLINLAANTYSDR---LKVVKLEIDPN------------------------PTTVKKYKV   72 (108)
T ss_dssp             SSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT---CEEEEEESTTC------------------------HHHHHHTTC
T ss_pred             CCcEEEEEECCCCCCccccchHHHHHHHhcCCc---ceeceeccccc------------------------HHHHHHhcc
Confidence            579999999999999999999999999998775   78888877654                        678999999


Q ss_pred             CCCceEEEEcCCCCCCCcccc
Q 014225          141 EGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       141 ~~~P~~~lid~~~~dG~i~~~  161 (428)
                      .++||++++.    +|+.+.+
T Consensus        73 ~~~Pt~~~~~----~g~~v~~   89 (108)
T d1thxa_          73 EGVPALRLVK----GEQILDS   89 (108)
T ss_dssp             CSSSEEEEEE----TTEEEEE
T ss_pred             cCCCEEEEEE----CCEEEEE
Confidence            9999999997    6876644

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.34  E-value=1e-12  Score=103.38  Aligned_cols=70  Identities=19%  Similarity=0.402  Sum_probs=60.3

Q ss_pred             CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225           61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI  140 (428)
Q Consensus        61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v  140 (428)
                      +|+|+|+|||+||++|+.+.|.+.++.+++.+.   +.++.|+.|..                        ..+++.|+|
T Consensus        17 ~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~---~~~~~v~~d~~------------------------~~l~~~~~V   69 (104)
T d1fb6a_          17 EVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK---IAVYKLNTDEA------------------------PGIATQYNI   69 (104)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC------------------------HHHHHHTTC
T ss_pred             CCcEEEEEEcCccCCccccCchhHHHHHhhcCc---cceeEEecccc------------------------hhhhhhcce
Confidence            579999999999999999999999999998776   66777766544                        678999999


Q ss_pred             CCCceEEEEcCCCCCCCcccc
Q 014225          141 EGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       141 ~~~P~~~lid~~~~dG~i~~~  161 (428)
                      .++||++++.    +|+.+.+
T Consensus        70 ~~~Pt~~~~~----~G~~v~~   86 (104)
T d1fb6a_          70 RSIPTVLFFK----NGERKES   86 (104)
T ss_dssp             CSSSEEEEEE----TTEEEEE
T ss_pred             eeeeEEEEEE----cCeEEEE
Confidence            9999999986    7877754

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=5.2e-13  Score=107.45  Aligned_cols=82  Identities=15%  Similarity=0.278  Sum_probs=59.4

Q ss_pred             ecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHH
Q 014225           55 KVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKAL  134 (428)
Q Consensus        55 ~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l  134 (428)
                      .+++.+||+|+|+|||+||++|+.+.|.+....+..+... ++.++.+.++.+.                    +....+
T Consensus        16 ~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~--------------------~~~~~l   74 (117)
T d2fwha1          16 ALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-DTVLLQANVTAND--------------------AQDVAL   74 (117)
T ss_dssp             HHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT-TSEEEEEECTTCC--------------------HHHHHH
T ss_pred             HHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhcc-ceEEEecccccch--------------------hHHHHH
Confidence            3455689999999999999999999998844333322221 2555555543331                    122788


Q ss_pred             HhhcCCCCCceEEEEcCCCCCCCccc
Q 014225          135 NRKFDIEGIPCLVVLQPYDDKDDATL  160 (428)
Q Consensus       135 ~~~~~v~~~P~~~lid~~~~dG~i~~  160 (428)
                      ++.|++.++|+++++++   +|+++.
T Consensus        75 ~~~~~v~~~Pt~~~~~~---~G~~~~   97 (117)
T d2fwha1          75 LKHLNVLGLPTILFFDG---QGQEHP   97 (117)
T ss_dssp             HHHTTCCSSSEEEEECT---TSCBCG
T ss_pred             HhhhehhhceEEEEEeC---CCcEEe
Confidence            99999999999999999   998764

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.33  E-value=1.6e-12  Score=104.13  Aligned_cols=70  Identities=21%  Similarity=0.435  Sum_probs=58.6

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+++++|+|||+||++|+.+.|.|.++.+.+++    +.++.|+.|..                        ..+++.|+
T Consensus        27 ~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~----~~~~~vd~~~~------------------------~~l~~~~~   78 (114)
T d1xfla_          27 SKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN----VLFLKVDTDEL------------------------KSVASDWA   78 (114)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSS----EEEEEEETTTS------------------------HHHHHHTT
T ss_pred             cCCeEEEEEEcCCCCCccccccchhhhcccccc----cceeEEEeeec------------------------eeeccccc
Confidence            478999999999999999999999999988753    66666655543                        67889999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      |.++||++++.    +|+.+.+
T Consensus        79 V~~~Pt~~~~~----~G~~v~~   96 (114)
T d1xfla_          79 IQAMPTFMFLK----EGKILDK   96 (114)
T ss_dssp             CCSSSEEEEEE----TTEEEEE
T ss_pred             eeeeEEEEEEE----CCEEEEE
Confidence            99999999995    7977654

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.33  E-value=2.6e-12  Score=99.52  Aligned_cols=70  Identities=13%  Similarity=0.158  Sum_probs=58.7

Q ss_pred             ccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcch
Q 014225          223 SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI  302 (428)
Q Consensus       223 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~  302 (428)
                      .+.|.+.++.|+++|||+|+.+.|.|+++...+           +++.+..|+++..                       
T Consensus        12 ~l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~-----------~~i~~~~vd~~~~-----------------------   57 (96)
T d1hyua4          12 DIDGDFEFETYYSLSCHNCPDVVQALNLMAVLN-----------PRIKHTAIDGGTF-----------------------   57 (96)
T ss_dssp             HCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHC-----------TTEEEEEEETTTC-----------------------
T ss_pred             hcCCCeEEEEEECCCCcchHHHHHHHHHHHHhC-----------CceEEEEEecccc-----------------------
Confidence            456778899999999999999999999987653           3588888888865                       


Q ss_pred             hHHHHhcCcCccceEEEECCCCcEEec
Q 014225          303 KELTKYFDVQGIPCLVIIGPEGKTVTK  329 (428)
Q Consensus       303 ~~~~~~~~v~~~P~~~lid~~G~i~~~  329 (428)
                      .+++..|+|+++||+++   +|+.++.
T Consensus        58 ~~l~~~~~I~~vPt~~~---ng~~~~~   81 (96)
T d1hyua4          58 QNEITERNVMGVPAVFV---NGKEFGQ   81 (96)
T ss_dssp             HHHHHHTTCCSSSEEEE---TTEEEEE
T ss_pred             hHHHhhcccccccEEEE---CCEEEEe
Confidence            68999999999999865   7887765

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.33  E-value=1.1e-12  Score=104.66  Aligned_cols=71  Identities=18%  Similarity=0.295  Sum_probs=61.1

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+|+|+|+||++||++|+.+.|.+.+++++++++   +.++.|++|..                        ..+++.|+
T Consensus        23 ~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~---v~~~~vd~d~~------------------------~~l~~~~~   75 (112)
T d1ep7a_          23 EHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGK---VIFLKVDVDAV------------------------AAVAEAAG   75 (112)
T ss_dssp             HTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTTT------------------------HHHHHHHT
T ss_pred             cCCeEEEEEEcCCcCCCcccchhhhhhhhcccce---EEEEEeecccc------------------------cccccccc
Confidence            4789999999999999999999999999998764   77887766544                        67889999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++||++++.    +|+.+.+
T Consensus        76 v~~~Pt~~~~~----~G~~v~~   93 (112)
T d1ep7a_          76 ITAMPTFHVYK----DGVKADD   93 (112)
T ss_dssp             CCBSSEEEEEE----TTEEEEE
T ss_pred             ccCCCEEEEEE----CCEEEEE
Confidence            99999998886    7977654

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.32  E-value=1.3e-12  Score=104.45  Aligned_cols=70  Identities=23%  Similarity=0.528  Sum_probs=59.0

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+|+|+|+|||+||++|+.+.|.|.++.+++.+    +.++.|+.|..                        ..+++.|+
T Consensus        25 ~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~----~~~~~vd~d~~------------------------~~l~~~~~   76 (113)
T d1ti3a_          25 SQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN----VTFLKVDVDEL------------------------KAVAEEWN   76 (113)
T ss_dssp             SSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSS----EEEEEEETTTC------------------------HHHHHHHH
T ss_pred             CCCEEEEEEEcCccccchhhhhhhhhhhccCCC----ceEEeeeeecc------------------------ccccccCe
Confidence            468999999999999999999999999988743    66776666543                        67889999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      |.++||++++.    +|+.+.+
T Consensus        77 I~~~Pt~~~~k----~G~~v~~   94 (113)
T d1ti3a_          77 VEAMPTFIFLK----DGKLVDK   94 (113)
T ss_dssp             CSSTTEEEEEE----TTEEEEE
T ss_pred             ecccceEEEEE----CCEEEEE
Confidence            99999999987    7977755

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.4e-12  Score=106.26  Aligned_cols=71  Identities=18%  Similarity=0.396  Sum_probs=61.3

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      ++|+|+|+|||+||++|+.+.|.|.++++++++.   +.++.|++|..                        ..+++.|+
T Consensus        21 ~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~---v~~~~VDvd~~------------------------~~la~~~~   73 (137)
T d1qgva_          21 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNF---AVIYLVDITEV------------------------PDFNKMYE   73 (137)
T ss_dssp             SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTC------------------------CTTTTSSC
T ss_pred             CCCEEEEEEECCCCccchhcChHHHHHHHHhhcc---ceEEEeecccc------------------------chhhhhcC
Confidence            4689999999999999999999999999999865   78888877655                        56788999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      |.++||++++.    +|+.+..
T Consensus        74 I~~~PT~~~f~----~g~~i~~   91 (137)
T d1qgva_          74 LYDPCTVMFFF----RNKHIMI   91 (137)
T ss_dssp             SCSSCEEEEEE----TTEEEEE
T ss_pred             eeeEEEEEEEe----CCcEEEE
Confidence            99999999997    6766544

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.31  E-value=1.6e-12  Score=105.04  Aligned_cols=69  Identities=17%  Similarity=0.415  Sum_probs=60.7

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .++.++|.||++||++|+++.|.+.++.+.+...         ++.|+.|+++.+                       .+
T Consensus        26 ~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~---------~v~~~~vd~~~~-----------------------~~   73 (119)
T d2b5ea4          26 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEK---------NITLAQIDCTEN-----------------------QD   73 (119)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---------TCEEEEEETTTC-----------------------HH
T ss_pred             cCCeEEEEEECCccCcccccchhhhhhhhhhccc---------ceeeeeeeccch-----------------------HH
Confidence            4588999999999999999999999999988654         688888988855                       68


Q ss_pred             HHHhcCcCccceEEEECCCCcE
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKT  326 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i  326 (428)
                      ++..|+|.++||++++ ++|+.
T Consensus        74 l~~~~~v~~~Pti~~f-~~g~~   94 (119)
T d2b5ea4          74 LCMEHNIPGFPSLKIF-KNSDV   94 (119)
T ss_dssp             HHHHTTCCSSSEEEEE-ETTCT
T ss_pred             HHHHhccccCCeEEEE-ECCEE
Confidence            9999999999999999 77744

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.4e-12  Score=102.90  Aligned_cols=70  Identities=19%  Similarity=0.362  Sum_probs=58.2

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      ++|+|+|+|||+||+||+.+.|.+.++.+.+.+    +.++.|+.|..                        ..+++.|+
T Consensus        19 ~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~----~~~~~vd~d~~------------------------~~~~~~~~   70 (105)
T d2ifqa1          19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN----VIFLEVDVDDC------------------------QDVASECE   70 (105)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTC------------------------HHHHHHTT
T ss_pred             CCCEEEEEEEcCCccchhhhhhhhhhhcccccc----ceeeecccccC------------------------HhHHHHcC
Confidence            468999999999999999999999999988754    44665555443                        67888999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      |.++||++++.    +|+.+.+
T Consensus        71 V~~~Pt~~~~~----~G~~v~~   88 (105)
T d2ifqa1          71 VKCMPTFQFFK----KGQKVGE   88 (105)
T ss_dssp             CCBSSEEEEEE----TTEEEEE
T ss_pred             ceEEEEEEEEE----CCEEEEE
Confidence            99999999996    8987755

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.7e-12  Score=102.79  Aligned_cols=70  Identities=9%  Similarity=0.140  Sum_probs=59.3

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+|+++|+|||+||++|+.+.|.+.++++++++    +.++.|++|..                        ..+++.|+
T Consensus        20 ~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~----~~f~~vd~d~~------------------------~~l~~~~~   71 (107)
T d1gh2a_          20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQ----AVFLEVDVHQC------------------------QGTAATNN   71 (107)
T ss_dssp             TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTS------------------------HHHHHHTT
T ss_pred             CCCEEEEEEECCCCCCccccchhhhcccccccc----ccccccccccc------------------------hhhhhhcC
Confidence            468999999999999999999999999998753    66776666543                        67889999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++|+++++.    +|+.+.+
T Consensus        72 v~~~Pt~~~~~----~G~~v~~   89 (107)
T d1gh2a_          72 ISATPTFQFFR----NKVRIDQ   89 (107)
T ss_dssp             CCSSSEEEEEE----TTEEEEE
T ss_pred             ceeceEEEEEE----CCEEEEE
Confidence            99999999996    7977654

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.30  E-value=1.4e-12  Score=115.87  Aligned_cols=118  Identities=14%  Similarity=0.191  Sum_probs=90.1

Q ss_pred             cccccccCc-cccCCCC-EEecccC-CCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCCh--HH
Q 014225           37 LLASKDRDY-LLNQHGT-QVKVSDL-EGKVTALYFS-ANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDL--NA  110 (428)
Q Consensus        37 ~~g~~~pdf-l~~~~G~-~v~l~~~-~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~--~~  110 (428)
                      .+|+.+||| +.+.+|. +++++++ +||.++|+|| +.|||.|..++..+++.+++|++.|  +++++||.|...  ..
T Consensus         3 ~iGd~aPdF~l~~~~~~g~i~l~d~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~--~~vigiS~Ds~~sh~~   80 (219)
T d1xcca_           3 HLGATFPNFTAKASGIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLN--CKLIGFSCNSKESHDK   80 (219)
T ss_dssp             CTTCBCCCCEECBTTCSSCEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTT--EEEEEEESSCHHHHHH
T ss_pred             cCCCCCCCcEeeccCCCCcEEeHHHcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccc--eEEEeecCccHhHHhH
Confidence            379999999 8766433 6999996 8999999999 9999999999999999999999998  999999998653  33


Q ss_pred             HHHHHhc----CCCceeccCChHHHHHHHhhcCCC------------CCceEEEEcCCCCCCCcccc
Q 014225          111 FNNYRAC----MPWLAVPYSDLETKKALNRKFDIE------------GIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       111 ~~~~~~~----~~~~~~~~~d~~~~~~l~~~~~v~------------~~P~~~lid~~~~dG~i~~~  161 (428)
                      |.+..+.    .+..+...+|.+  ..+++.||+-            ..-+++|||+   +|+|...
T Consensus        81 w~~~~~~~~~~~~l~fpllsD~~--~~va~~ygv~~~~~~~~~~~~~~~R~tFiIDp---~g~Ir~~  142 (219)
T d1xcca_          81 WIEDIKYYGKLNKWEIPIVCDES--RELANKLKIMDEQEKDITGLPLTCRCLFFISP---EKKIKAT  142 (219)
T ss_dssp             HHHHHHHHHTCSCCCCCEEECTT--SHHHHHHTCEEEEEECTTSCEEECEEEEEECT---TSBEEEE
T ss_pred             HhhhhHhhcccCCCCcccccccc--cHHHHHhCCcccccccCcccceeeeeeEEEcC---cceEEEE
Confidence            4333321    121111123444  7999999982            2358999999   9988754

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.29  E-value=2.3e-12  Score=102.97  Aligned_cols=70  Identities=19%  Similarity=0.395  Sum_probs=60.0

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      ++++++|+|||+||++|+.+.|.|.++++++.+    +.++.|+.|..                        ..+++.|+
T Consensus        25 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~----v~~~~vd~d~~------------------------~~l~~~~~   76 (113)
T d1r26a_          25 EDILTVAWFTAVWCGPCKTIERPMEKIAYEFPT----VKFAKVDADNN------------------------SEIVSKCR   76 (113)
T ss_dssp             SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCTT----SEEEEEETTTC------------------------HHHHHHTT
T ss_pred             CCCeEEEEEECCCCccchhhceecccccccccc----ccccccccccc------------------------hhhHHHcc
Confidence            467999999999999999999999999999852    77888777654                        67899999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++||++++.    +|+.+.+
T Consensus        77 V~~~Pt~~~~~----~G~~v~~   94 (113)
T d1r26a_          77 VLQLPTFIIAR----SGKMLGH   94 (113)
T ss_dssp             CCSSSEEEEEE----TTEEEEE
T ss_pred             ccCCCEEEEEE----CCEEEEE
Confidence            99999999986    7977654

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.29  E-value=5.5e-12  Score=101.10  Aligned_cols=78  Identities=15%  Similarity=0.388  Sum_probs=60.8

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+++++|+||++|||+|+.+.|.|.++.++++.            .+..|.++.....                 +....
T Consensus        25 ~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~------------~v~~v~~~~~~~~-----------------~~~~~   75 (115)
T d1zmaa1          25 KKETATFFIGRKTCPYCRKFAGTLSGVVAETKA------------HIYFINSEEPSQL-----------------NDLQA   75 (115)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC------------CCEEEETTCGGGH-----------------HHHHH
T ss_pred             cCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhh------------hhhhheeeccccc-----------------ccccc
Confidence            367899999999999999999999999888753            3556677643210                 11256


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecccc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~~~  332 (428)
                      +.+.|+|.++||++++ ++|+++.+..+
T Consensus        76 ~~~~~~V~~~PTli~~-~~gk~~~~~~G  102 (115)
T d1zmaa1          76 FRSRYGIPTVPGFVHI-TDGQINVRCDS  102 (115)
T ss_dssp             HHHHHTCCSSCEEEEE-ETTEEEEECCT
T ss_pred             cccccccccccEEEEE-ECCEEEEEEcC
Confidence            7889999999999999 79999887544

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.27  E-value=1.3e-12  Score=98.90  Aligned_cols=68  Identities=21%  Similarity=0.370  Sum_probs=54.3

Q ss_pred             CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225           61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI  140 (428)
Q Consensus        61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v  140 (428)
                      +|+.++.|||+||+||+.+.|.+.++++.+++.   +.++.+..|..                        ..+++.|+|
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~~~~d~~------------------------~~la~~~~V   54 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDA---VEVEYINVMEN------------------------PQKAMEYGI   54 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSS---EEEEEEESSSS------------------------CCTTTSTTT
T ss_pred             CceEEEEEECCCCcChHhhhhhccccccccccc---ccccccccccc------------------------ccccccCCc
Confidence            588999999999999999999999999988664   66666655433                        456788999


Q ss_pred             CCCceEEEEcCCCCCCCcc
Q 014225          141 EGIPCLVVLQPYDDKDDAT  159 (428)
Q Consensus       141 ~~~P~~~lid~~~~dG~i~  159 (428)
                      .++||+++ +.   +|+++
T Consensus        55 ~~~Pt~~i-~~---~g~~~   69 (85)
T d1fo5a_          55 MAVPTIVI-NG---DVEFI   69 (85)
T ss_dssp             CCSSEEEE-TT---EEECC
T ss_pred             eEeeEEEE-EC---CcEEE
Confidence            99999755 55   77644

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.1e-12  Score=105.97  Aligned_cols=71  Identities=23%  Similarity=0.468  Sum_probs=59.1

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+|.++|.||++||++|+.+.|.+.++.+.+...       +..+.++.|+++..                       ..
T Consensus        23 ~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~-------~~~v~~~~vd~~~~-----------------------~~   72 (120)
T d1meka_          23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAE-------GSEIRLAKVDATEE-----------------------SD   72 (120)
T ss_dssp             HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTT-------CCCCBCEEEETTTC-----------------------CS
T ss_pred             cCCcEEEEEECCCcCCccccchhhhhhccccccc-------ccceeeeccccccc-----------------------hh
Confidence            3689999999999999999999999999998765       34577777777654                       56


Q ss_pred             HHHhcCcCccceEEEECCCCcE
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKT  326 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i  326 (428)
                      ++..|+|.++||++++ ++|+.
T Consensus        73 l~~~~~i~~~Pt~~~~-~~G~~   93 (120)
T d1meka_          73 LAQQYGVRGYPTIKFF-RNGDT   93 (120)
T ss_dssp             SHHHHTCCSSSEEEEE-ESSCS
T ss_pred             HHHHhCCccCCeEEEE-ECCeE
Confidence            8889999999999999 56643

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.24  E-value=7.6e-12  Score=98.16  Aligned_cols=70  Identities=17%  Similarity=0.341  Sum_probs=58.3

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+++++|+||++||++|+...|.+.++.+++++    ..++.++.|..                        ..+++.|+
T Consensus        17 ~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~----~~~~~vd~d~~------------------------~~~~~~~~   68 (103)
T d1syra_          17 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK----MVFIKVDVDEV------------------------SEVTEKEN   68 (103)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTT------------------------HHHHHHTT
T ss_pred             CCCcEEEEEeCCcccCcccccccchhhhhcccc----eEEEeeccccC------------------------cceeeeee
Confidence            368999999999999999999999999999854    45666655543                        67889999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      |.++||++++.    +|+.+.+
T Consensus        69 V~~~Pt~i~~k----~G~~v~~   86 (103)
T d1syra_          69 ITSMPTFKVYK----NGSSVDT   86 (103)
T ss_dssp             CCSSSEEEEEE----TTEEEEE
T ss_pred             eecceEEEEEE----CCEEEEE
Confidence            99999998886    7977654

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.23  E-value=1.7e-11  Score=96.67  Aligned_cols=77  Identities=13%  Similarity=0.177  Sum_probs=57.1

Q ss_pred             ccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhc-CCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHH
Q 014225           57 SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRN-NGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALN  135 (428)
Q Consensus        57 ~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~  135 (428)
                      ....++++++.||++||+||+.+.|.+.+++.+... .+.++.++.|+.+..                        ..++
T Consensus        11 ~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~------------------------~~l~   66 (107)
T d1a8la2          11 RNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEY------------------------PEWA   66 (107)
T ss_dssp             TTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGC------------------------HHHH
T ss_pred             HhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccc------------------------cccc
Confidence            345566778889999999999999999999876543 222356655544332                        6789


Q ss_pred             hhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          136 RKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       136 ~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.|+|.++||++++ +   +|+.+.+
T Consensus        67 ~~~~V~~vPTi~i~-~---~G~~~~~   88 (107)
T d1a8la2          67 DQYNVMAVPKIVIQ-V---NGEDRVE   88 (107)
T ss_dssp             HHTTCCSSCEEEEE-E---TTEEEEE
T ss_pred             cccccccceEEEEE-e---CCeEEEE
Confidence            99999999987665 5   7877654

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.23  E-value=7.2e-12  Score=99.88  Aligned_cols=71  Identities=18%  Similarity=0.371  Sum_probs=58.5

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+|+|+|+||++||++|+.+.|.|.++++++++    +.++.|+.|.. .                      ..+++.|+
T Consensus        24 ~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~----v~~~~vd~~~~-~----------------------~~l~~~~~   76 (112)
T d1f9ma_          24 GDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD----VIFLKLDCNQE-N----------------------KTLAKELG   76 (112)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEECSST-T----------------------HHHHHHHC
T ss_pred             CCCEEEEEEEcCCCcchHHHHHHHhhhcccccc----ceeeccccccc-c----------------------hhhHhhee
Confidence            358999999999999999999999999999854    55666655432 1                      67889999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      |.++|+++++.    +|+.+.+
T Consensus        77 V~~~Pt~~~~k----~G~~v~~   94 (112)
T d1f9ma_          77 IRVVPTFKILK----ENSVVGE   94 (112)
T ss_dssp             CSSSSEEEEEE----TTEEEEE
T ss_pred             eccCCEEEEEE----CCEEEEE
Confidence            99999999995    8987754

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=8.7e-12  Score=102.81  Aligned_cols=76  Identities=18%  Similarity=0.356  Sum_probs=52.6

Q ss_pred             cCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchh
Q 014225          224 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK  303 (428)
Q Consensus       224 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~  303 (428)
                      ..||+++|+|||+||++|+.+.|.+.+..+..+..        .++.+|.|..+..                       .
T Consensus        23 ~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~--------~~fv~v~vd~~~~-----------------------~   71 (135)
T d1sena_          23 ASGLPLMVIIHKSWCGACKALKPKFAESTEISELS--------HNFVMVNLEDEEE-----------------------P   71 (135)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHH--------TTSEEEEEEGGGS-----------------------C
T ss_pred             HcCCcEEEEEEecCCCCceecchhhhhhHHHHHhc--------CCcEEEeCCCCcC-----------------------H
Confidence            35899999999999999999999988765544332        2444444443322                       1


Q ss_pred             HHHH-hcCcCccceEEEECCCCcEEecc
Q 014225          304 ELTK-YFDVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       304 ~~~~-~~~v~~~P~~~lid~~G~i~~~~  330 (428)
                      .+.. .+...++|+++++|++|+++...
T Consensus        72 ~~~~~~~~~~~~Pt~~~~d~~G~~~~~~   99 (135)
T d1sena_          72 KDEDFSPDGGYIPRILFLDPSGKVHPEI   99 (135)
T ss_dssp             SCGGGCTTCSCSSEEEEECTTSCBCTTC
T ss_pred             HHHHHHhhcccceeEEEECCCCeEEEEe
Confidence            1122 23456789999999999988753

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.18  E-value=9.4e-12  Score=103.31  Aligned_cols=69  Identities=22%  Similarity=0.473  Sum_probs=55.5

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      ++.|+|.||++||++|+.+.|.|.++++.|++.         ...+..+.+|.+                       ..+
T Consensus        30 ~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~---------~~~v~~~~~d~~-----------------------~~~   77 (140)
T d2b5ea1          30 KKDVLVLYYAPWCGHCKRLAPTYQELADTYANA---------TSDVLIAKLDHT-----------------------END   77 (140)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHH---------CSSCEEEEEEGG-----------------------GCC
T ss_pred             CCCEEEEEEeccCcccchhHHHHHHHHHHHhcc---------ccceEEEeeecc-----------------------chh
Confidence            578999999999999999999999999999876         334445555543                       345


Q ss_pred             HHhcCcCccceEEEECCCCcEE
Q 014225          306 TKYFDVQGIPCLVIIGPEGKTV  327 (428)
Q Consensus       306 ~~~~~v~~~P~~~lid~~G~i~  327 (428)
                      +..|+|.++||++++ ++|+..
T Consensus        78 ~~~~~v~~~Ptl~~f-~~g~~~   98 (140)
T d2b5ea1          78 VRGVVIEGYPTIVLY-PGGKKS   98 (140)
T ss_dssp             CSSCCCSSSSEEEEE-CCTTSC
T ss_pred             ccccccccCCeEEEE-ECCEEc
Confidence            778999999999999 566544

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=3.7e-11  Score=102.08  Aligned_cols=118  Identities=14%  Similarity=0.130  Sum_probs=89.7

Q ss_pred             hccCCCCccc-C-CCCCceeccccc-CCcEEEEEEe-ccCChhHH-hhhHHHHHHHHHHHhhhhhcCCCCCCE-EEEEEE
Q 014225          202 LTNHDRGYLL-G-HPPDEKVPVSSL-VGKTVGLYFS-ARWCIPCE-KFMPKLLSIYQKIKQNLVEKGDALEDF-EVVFVS  275 (428)
Q Consensus       202 ~g~~~p~f~l-~-~~g~~~v~l~~~-~gk~vll~F~-a~wC~~C~-~~~~~l~~l~~~~~~~~~~~~~~~~~~-~iv~is  275 (428)
                      +|+.+|+|++ + .+|+ .++++++ +||+|||+|| +.|||.|. ++++.+.+.+..+.++         +. .|+.++
T Consensus         5 VGd~aP~f~l~~~~~~~-~v~l~d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~---------g~~~i~~~s   74 (161)
T d1hd2a_           5 VGDAIPAVEVFEGEPGN-KVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAK---------GVQVVACLS   74 (161)
T ss_dssp             TTCBCCCCEEECSSTTC-EEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTT---------TCCEEEEEE
T ss_pred             CCCcCCCeEEEecCCCc-EEEhHHHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHc---------CCeEEEEEe
Confidence            6999999999 5 5577 9999995 8999999999 68999995 5888899989988876         55 466777


Q ss_pred             cCCCHHHHHHHHhcCC-ccccccCCcchhHHHHhcCcC----c--------cceEEEECCCCcEEecc
Q 014225          276 TDRDQTSFESYFGTMP-WLALPFGDPTIKELTKYFDVQ----G--------IPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       276 ~d~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~v~----~--------~P~~~lid~~G~i~~~~  330 (428)
                      +| +.....++..... -..++++.|...++++.||+.    .        ....++|+.+|+|++..
T Consensus        75 ~~-~~~~~~~~~~~~~~~~~~~llsD~~~~~a~~~g~~~~~~~~g~~~~~~s~r~~~I~~~G~I~~~~  141 (161)
T d1hd2a_          75 VN-DAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALN  141 (161)
T ss_dssp             SS-CHHHHHHHHHHTTCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEETTEEEEEE
T ss_pred             cC-chhhhhhhhhhcccccccccccCCcceeeeeeeeeeccccCccccccEEeEEEEEECCCEEEEEE
Confidence            77 4444455555433 356888999999999999872    1        12345566799998764

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.17  E-value=3.2e-11  Score=97.13  Aligned_cols=70  Identities=21%  Similarity=0.401  Sum_probs=59.5

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .++.++|.||++||++|+.+.|.+.++++.+++.+  +.++.|++|..                        ..++++|+
T Consensus        26 ~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~--v~~~~vd~~~~------------------------~~l~~~~~   79 (119)
T d2b5ea4          26 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKN--ITLAQIDCTEN------------------------QDLCMEHN   79 (119)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTT--CEEEEEETTTC------------------------HHHHHHTT
T ss_pred             cCCeEEEEEECCccCcccccchhhhhhhhhhcccc--eeeeeeeccch------------------------HHHHHHhc
Confidence            46899999999999999999999999999997654  77777766543                        78999999


Q ss_pred             CCCCceEEEEcCCCCCCCcc
Q 014225          140 IEGIPCLVVLQPYDDKDDAT  159 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~  159 (428)
                      |.++|+++++.    +|+..
T Consensus        80 v~~~Pti~~f~----~g~~~   95 (119)
T d2b5ea4          80 IPGFPSLKIFK----NSDVN   95 (119)
T ss_dssp             CCSSSEEEEEE----TTCTT
T ss_pred             cccCCeEEEEE----CCEEe
Confidence            99999999995    67544

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.17  E-value=1e-10  Score=98.93  Aligned_cols=115  Identities=16%  Similarity=0.254  Sum_probs=75.9

Q ss_pred             cCc-cccCCCCEEecccCCCCEEEEEEecCCCh-hhhhhHHHHHHHHHHHhcCC-CcEEEEEEecCCC---hHHHHHHHh
Q 014225           43 RDY-LLNQHGTQVKVSDLEGKVTALYFSANWYP-PCGNFTGVLVDVYEELRNNG-SDFEVVFVSSDED---LNAFNNYRA  116 (428)
Q Consensus        43 pdf-l~~~~G~~v~l~~~~gk~vlv~F~a~wC~-~C~~~~p~l~~l~~~~~~~~-~~~~ii~vs~D~~---~~~~~~~~~  116 (428)
                      +|| |+|.+|+++++++++||++||+||.+||+ .|......+..+...+...+ ..+.++.++.+..   .+....+..
T Consensus         7 ~dF~l~d~~G~~vsl~~~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (169)
T d2b7ka1           7 GPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLS   86 (169)
T ss_dssp             CCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHT
T ss_pred             CCeEEEeCCCCEECHHHHCCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeeccccccCchhhhhhhhc
Confidence            589 99999999999999999999999999997 66677777776666665432 2255666655432   233333333


Q ss_pred             cC--CCceeccCChHHHHHHHhh----------------cCCCCCceEEEEcCCCCCCCcccc
Q 014225          117 CM--PWLAVPYSDLETKKALNRK----------------FDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       117 ~~--~~~~~~~~d~~~~~~l~~~----------------~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      ..  .|..... ...........                +.+...|+++|||+   +|+++..
T Consensus        87 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~---~G~vv~~  145 (169)
T d2b7ka1          87 DFHPSILGLTG-TFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDP---EGQFVDA  145 (169)
T ss_dssp             TSCTTCEEEEC-CHHHHHHHHHHTTC--------------CTTTCCCEEEECT---TSCEEEE
T ss_pred             ccccccccccc-chhhhhhhhhhhheeeeecccCCcccCceeeccceEEEECC---CCeEEEE
Confidence            22  2333332 32222333333                34567899999999   9999865

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.16  E-value=2.5e-11  Score=97.16  Aligned_cols=75  Identities=20%  Similarity=0.471  Sum_probs=58.7

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+++++|+||++||++|+.+.|.|.++.++++..     +.++++|...                  +.+..+.+++.|+
T Consensus        25 ~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~-----v~~v~~~~~~------------------~~~~~~~~~~~~~   81 (115)
T d1zmaa1          25 KKETATFFIGRKTCPYCRKFAGTLSGVVAETKAH-----IYFINSEEPS------------------QLNDLQAFRSRYG   81 (115)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCC-----CEEEETTCGG------------------GHHHHHHHHHHHT
T ss_pred             cCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhh-----hhhheeeccc------------------ccccccccccccc
Confidence            4679999999999999999999999999987543     4455555332                  2222368899999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      |.++||++++.    +|+++.+
T Consensus        82 V~~~PTli~~~----~gk~~~~   99 (115)
T d1zmaa1          82 IPTVPGFVHIT----DGQINVR   99 (115)
T ss_dssp             CCSSCEEEEEE----TTEEEEE
T ss_pred             cccccEEEEEE----CCEEEEE
Confidence            99999999997    7876644

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.15  E-value=1.1e-10  Score=94.60  Aligned_cols=90  Identities=11%  Similarity=0.071  Sum_probs=63.7

Q ss_pred             CCcEEEEEEeccCChhH------HhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccC
Q 014225          225 VGKTVGLYFSARWCIPC------EKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFG  298 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~  298 (428)
                      +++.++|.||++||++|      ..+.+.+..+++.+...         ++.+..|+++.+                   
T Consensus        27 ~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~---------~v~~a~Vd~~~~-------------------   78 (124)
T d1a8ya1          27 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDK---------GVGFGLVDSEKD-------------------   78 (124)
T ss_dssp             HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGG---------TEEEEEEETTTS-------------------
T ss_pred             hCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccC---------CeEEEEEEeecc-------------------
Confidence            35789999999999864      23333344444444433         688888888766                   


Q ss_pred             CcchhHHHHhcCcCccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHh
Q 014225          299 DPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAK  362 (428)
Q Consensus       299 ~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~  362 (428)
                          .++++.|+|.++||++++ ++|+++...|.+               ..+.|.+.|.+++.
T Consensus        79 ----~~l~~~~~I~~yPTi~~f-~~g~~~~y~G~r---------------~~~~l~~fi~~~l~  122 (124)
T d1a8ya1          79 ----AAVAKKLGLTEEDSIYVF-KEDEVIEYDGEF---------------SADTLVEFLLDVLE  122 (124)
T ss_dssp             ----HHHHHTTTCCSTTCEEEE-ESSSEEECCSCC---------------SHHHHHHHHHHHHS
T ss_pred             ----cchhhccccccCCcEEEe-ccCccEEeeCCC---------------CHHHHHHHHHHhcC
Confidence                689999999999999999 678777654321               24667777777664

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.15  E-value=2.1e-11  Score=98.08  Aligned_cols=72  Identities=14%  Similarity=0.249  Sum_probs=53.1

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+++|+|.||++|||+|+.+.|.|.++.++|.+..  +.++.|+.                        +....+++.|+
T Consensus        29 ~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~--~~~~~Vd~------------------------d~~~~l~~~~~   82 (119)
T d2es7a1          29 GDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFD--WQVAVADL------------------------EQSEAIGDRFN   82 (119)
T ss_dssp             CSEEEEECCCSCC----CCHHHHHHHHHHTCTTSC--CEEEEECH------------------------HHHHHHHHTTT
T ss_pred             CCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCc--eEEEEEEC------------------------CCCHHHHHhcC
Confidence            45799999999999999999999999999997754  66666533                        22388999999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      |.++|+++++.    +|+.+.+
T Consensus        83 V~~~Pt~~~~~----~G~~v~~  100 (119)
T d2es7a1          83 VRRFPATLVFT----DGKLRGA  100 (119)
T ss_dssp             CCSSSEEEEES----CC----C
T ss_pred             cCcceEEEEEE----cCeEEEE
Confidence            99999999995    7977755

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.2e-11  Score=99.75  Aligned_cols=68  Identities=19%  Similarity=0.418  Sum_probs=56.0

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+|+++|.|||+||++|+.+.|.+.++.++++..+.++.++.|+.|..                        ..+++.|+
T Consensus        23 ~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~------------------------~~l~~~~~   78 (120)
T d1meka_          23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEE------------------------SDLAQQYG   78 (120)
T ss_dssp             HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTC------------------------CSSHHHHT
T ss_pred             cCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccc------------------------hhHHHHhC
Confidence            468999999999999999999999999999987664566666555433                        46677899


Q ss_pred             CCCCceEEEEcC
Q 014225          140 IEGIPCLVVLQP  151 (428)
Q Consensus       140 v~~~P~~~lid~  151 (428)
                      |.++||++++..
T Consensus        79 i~~~Pt~~~~~~   90 (120)
T d1meka_          79 VRGYPTIKFFRN   90 (120)
T ss_dssp             CCSSSEEEEEES
T ss_pred             CccCCeEEEEEC
Confidence            999999999873

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=1.1e-11  Score=101.51  Aligned_cols=72  Identities=14%  Similarity=0.214  Sum_probs=60.2

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      ++++|+|.|||+|||+|+.+.|.|.++.+++.+..  +.+..|+.                        +....+++.|+
T Consensus        35 ~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~--~~~a~Vd~------------------------d~~~~la~~~~   88 (132)
T d2hfda1          35 PDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYT--WQVAIADL------------------------EQSEAIGDRFG   88 (132)
T ss_dssp             SEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSC--EEEEEECH------------------------HHHHHHHHHHT
T ss_pred             CCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCc--ceeEEEEe------------------------cCCHHHHHhhc
Confidence            35799999999999999999999999999998865  66665533                        33389999999


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      |.++||++++.    +|+.+..
T Consensus        89 V~~~PT~~~~~----~G~~v~~  106 (132)
T d2hfda1          89 VFRFPATLVFT----GGNYRGV  106 (132)
T ss_dssp             CCSCCEEEEEE----TTEEEEE
T ss_pred             cCcceeEEEEE----cCcEeee
Confidence            99999999996    7877654

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.12  E-value=3.7e-13  Score=115.46  Aligned_cols=78  Identities=14%  Similarity=0.220  Sum_probs=59.4

Q ss_pred             ecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccC
Q 014225          219 VPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFG  298 (428)
Q Consensus       219 v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~  298 (428)
                      -.+++++++++++.||++|||+|++++|.|.++++.++           ++.+..|++|.+.                  
T Consensus        47 ~~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~-----------~~~~~~i~~d~~~------------------   97 (166)
T d1z6na1          47 ERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-----------NIELAIISKGRAE------------------   97 (166)
T ss_dssp             HHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT-----------TEEEEEECHHHHH------------------
T ss_pred             HHHHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCC-----------CCcEEEEECccCH------------------
Confidence            34667889999999999999999999999999988765           4677778777543                  


Q ss_pred             CcchhHHHHhc---CcCccceEEEECCCCcEEecc
Q 014225          299 DPTIKELTKYF---DVQGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       299 ~d~~~~~~~~~---~v~~~P~~~lid~~G~i~~~~  330 (428)
                           +..+.|   +...+|.++++|.++......
T Consensus        98 -----~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~  127 (166)
T d1z6na1          98 -----DDLRQRLALERIAIPLVLVLDEEFNLLGRF  127 (166)
T ss_dssp             -----HHTTTTTTCSSCCSSEEEEECTTCCEEEEE
T ss_pred             -----HHHHHHHHhccccccceeecCccchhcccc
Confidence                 333444   345677788888888776654

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.11  E-value=2e-11  Score=92.19  Aligned_cols=60  Identities=13%  Similarity=0.258  Sum_probs=49.7

Q ss_pred             EEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCC
Q 014225           64 TALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGI  143 (428)
Q Consensus        64 vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~  143 (428)
                      .+..|||+||+||++..|.++++++++.++   +.++.|++|.+                        ..+++.|+|.++
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~---v~~~~vd~d~~------------------------~~l~~~~~V~~~   56 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDK---IDVEKIDIMVD------------------------REKAIEYGLMAV   56 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCSS---CCEEEECTTTC------------------------GGGGGGTCSSCS
T ss_pred             EEEEEECCCCcchHHHHHHHhhhccccccc---ccccccccccc------------------------hhhHHhcCceEe
Confidence            456699999999999999999999999764   77887766544                        567889999999


Q ss_pred             ceEEEEcC
Q 014225          144 PCLVVLQP  151 (428)
Q Consensus       144 P~~~lid~  151 (428)
                      ||+++ +.
T Consensus        57 Pt~~~-~~   63 (85)
T d1nhoa_          57 PAIAI-NG   63 (85)
T ss_dssp             SEEEE-TT
T ss_pred             CEEEE-CC
Confidence            98654 54

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.05  E-value=3.8e-11  Score=99.58  Aligned_cols=65  Identities=20%  Similarity=0.330  Sum_probs=52.4

Q ss_pred             CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225           61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI  140 (428)
Q Consensus        61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v  140 (428)
                      +|.|+|.|||+||++|+.+.|.+.++++.|++.+  ..+..+.+|.+                        ..+++.|+|
T Consensus        30 ~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~--~~v~~~~~d~~------------------------~~~~~~~~v   83 (140)
T d2b5ea1          30 KKDVLVLYYAPWCGHCKRLAPTYQELADTYANAT--SDVLIAKLDHT------------------------ENDVRGVVI   83 (140)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHC--SSCEEEEEEGG------------------------GCCCSSCCC
T ss_pred             CCCEEEEEEeccCcccchhHHHHHHHHHHHhccc--cceEEEeeecc------------------------chhcccccc
Confidence            5789999999999999999999999999998765  33444444433                        335667999


Q ss_pred             CCCceEEEEcC
Q 014225          141 EGIPCLVVLQP  151 (428)
Q Consensus       141 ~~~P~~~lid~  151 (428)
                      .++|+++++..
T Consensus        84 ~~~Ptl~~f~~   94 (140)
T d2b5ea1          84 EGYPTIVLYPG   94 (140)
T ss_dssp             SSSSEEEEECC
T ss_pred             ccCCeEEEEEC
Confidence            99999999973

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.04  E-value=7.8e-10  Score=89.17  Aligned_cols=73  Identities=10%  Similarity=0.079  Sum_probs=57.7

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      +.+.+||.|||+||++|+.  |.+.++++.+...       ..++.+..|.++...                  .+.+.+
T Consensus        18 ~~~~~lV~Fya~wC~~ck~--p~f~kla~~~~~~-------~~~v~ia~Vd~~~~~------------------~~~n~~   70 (122)
T d2c0ga2          18 RFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKA-------TKDLLIATVGVKDYG------------------ELENKA   70 (122)
T ss_dssp             TSSEEEEEEEESSCCSHHH--HHHHHHHHHHHHH-------CSSEEEEEEEECSST------------------TCTTHH
T ss_pred             cCCcEEEEEECCCCCcccC--HHHHHHHHHHHHh-------CCCeEEEeccccccc------------------cccCHH
Confidence            4589999999999999994  9999999998765       457888888875320                  112478


Q ss_pred             HHHhcCc--CccceEEEECCCC
Q 014225          305 LTKYFDV--QGIPCLVIIGPEG  324 (428)
Q Consensus       305 ~~~~~~v--~~~P~~~lid~~G  324 (428)
                      +++.|+|  .++||++++..++
T Consensus        71 l~~~~~i~~~~~PTi~~f~~g~   92 (122)
T d2c0ga2          71 LGDRYKVDDKNFPSIFLFKGNA   92 (122)
T ss_dssp             HHHHTTCCTTSCCEEEEESSSS
T ss_pred             HHHHhhcccCCCCcEEEEeCCc
Confidence            9999988  5799999995544

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.02  E-value=5.7e-11  Score=94.99  Aligned_cols=68  Identities=22%  Similarity=0.348  Sum_probs=49.0

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .+|+++|.||++||++|+++.|.|.++++.+....     ....+.+.....+                          .
T Consensus        19 ~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~-----~~~~~~~~~~~~~--------------------------~   67 (116)
T d2djja1          19 DTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSE-----FKDRVVIAKVDAT--------------------------A   67 (116)
T ss_dssp             TTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSS-----CTTSSEEEEEETT--------------------------T
T ss_pred             CCCCEEEEEEecccccccccchHHHHHHHHHhccc-----ccceeEEEecccc--------------------------h
Confidence            36889999999999999999999999999997540     0011222222222                          2


Q ss_pred             HHHhcCcCccceEEEECCCC
Q 014225          305 LTKYFDVQGIPCLVIIGPEG  324 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G  324 (428)
                      ....++|.++||++++ ++|
T Consensus        68 ~~~~~~v~~~Pti~~f-~~g   86 (116)
T d2djja1          68 NDVPDEIQGFPTIKLY-PAG   86 (116)
T ss_dssp             SCCSSCCSSSSEEEEE-CSS
T ss_pred             hhhcccccCCCEEEEE-ECC
Confidence            2456899999999999 555

>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Plant peroxiredoxin
species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]

Probab=99.00  E-value=6.3e-10  Score=94.38  Aligned_cols=119  Identities=16%  Similarity=0.209  Sum_probs=93.0

Q ss_pred             hhccCCCCccc---CCC--CCceecccc-cCCcEEEEEEe-ccCChhHH-hhhHHHHHHHHHHHhhhhhcCCCCCCEEEE
Q 014225          201 LLTNHDRGYLL---GHP--PDEKVPVSS-LVGKTVGLYFS-ARWCIPCE-KFMPKLLSIYQKIKQNLVEKGDALEDFEVV  272 (428)
Q Consensus       201 ~~g~~~p~f~l---~~~--g~~~v~l~~-~~gk~vll~F~-a~wC~~C~-~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv  272 (428)
                      .+|+++|+|+|   +.+  ++ ++++++ ++||+|||+|| ..++|.|. +..+......+.+..+        ...+++
T Consensus         5 ~vGd~~Pdf~l~~~~~~~~~~-~~~l~d~~~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~--------g~~~v~   75 (162)
T d1tp9a1           5 AVGDVLPDGKLAYFDEQDQLQ-EVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSK--------GVTEIL   75 (162)
T ss_dssp             CTTCBCCCCEEEEECTTSCEE-EEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHT--------TCCCEE
T ss_pred             CCCCCCCCeEEEeecCCCCce-EEEHHHHhCCCeEEEEEEecccchhhhhhcchHHHHhhhHHHHc--------CCccee
Confidence            36999999997   233  34 789988 59999999999 68999996 5777778778877765        235788


Q ss_pred             EEEcCCCHHHHHHHHhcCC-ccccccCCcchhHHHHhcCcC-----------ccceEEEECCCCcEEecc
Q 014225          273 FVSTDRDQTSFESYFGTMP-WLALPFGDPTIKELTKYFDVQ-----------GIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       273 ~is~d~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~  330 (428)
                      .||+| +....+++....+ ...+++..|...++++.||+.           ....++||| +|+|++..
T Consensus        76 ~isvd-~~~~~~~~~~~~~~~~~~~~lsD~~~~~~~~~g~~~~~~~~g~g~~~~R~tfiId-dg~I~~~~  143 (162)
T d1tp9a1          76 CISVN-DPFVMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAAN  143 (162)
T ss_dssp             EEESS-CHHHHHHHHHTCTTCSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEE
T ss_pred             eeecc-chhhhhhhhhhcccccccccccchhhHHHhhhhhccccccccCCcEEEEEEEEEE-CCEEEEEE
Confidence            99998 6667777777665 356888899999999999973           235689998 89998864

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.99  E-value=4.7e-10  Score=86.46  Aligned_cols=63  Identities=11%  Similarity=0.122  Sum_probs=51.8

Q ss_pred             cCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhh
Q 014225           58 DLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRK  137 (428)
Q Consensus        58 ~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~  137 (428)
                      .++|.+.++.|+++|||+|+...|.|++++..+.    ++.+..|+.|..                        ..+++.
T Consensus        12 ~l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~----~i~~~~vd~~~~------------------------~~l~~~   63 (96)
T d1hyua4          12 DIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP----RIKHTAIDGGTF------------------------QNEITE   63 (96)
T ss_dssp             HCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT----TEEEEEEETTTC------------------------HHHHHH
T ss_pred             hcCCCeEEEEEECCCCcchHHHHHHHHHHHHhCC----ceEEEEEecccc------------------------hHHHhh
Confidence            4567888999999999999999999999987642    377777766544                        788899


Q ss_pred             cCCCCCceEEE
Q 014225          138 FDIEGIPCLVV  148 (428)
Q Consensus       138 ~~v~~~P~~~l  148 (428)
                      |+|.++||+++
T Consensus        64 ~~I~~vPt~~~   74 (96)
T d1hyua4          64 RNVMGVPAVFV   74 (96)
T ss_dssp             TTCCSSSEEEE
T ss_pred             cccccccEEEE
Confidence            99999999754

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.6e-10  Score=94.96  Aligned_cols=77  Identities=14%  Similarity=0.230  Sum_probs=52.6

Q ss_pred             ccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHh
Q 014225           57 SDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNR  136 (428)
Q Consensus        57 ~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~  136 (428)
                      +.-.||+|+|+|||+||++|+.+.|.+.+..+..+.. .++..+  .+|.+..                      ..+..
T Consensus        21 A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~-~~fv~v--~vd~~~~----------------------~~~~~   75 (135)
T d1sena_          21 AAASGLPLMVIIHKSWCGACKALKPKFAESTEISELS-HNFVMV--NLEDEEE----------------------PKDED   75 (135)
T ss_dssp             HHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHH-TTSEEE--EEEGGGS----------------------CSCGG
T ss_pred             HHHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhc-CCcEEE--eCCCCcC----------------------HHHHH
Confidence            3446999999999999999999999998765544332 235444  4443322                      11111


Q ss_pred             -hcCCCCCceEEEEcCCCCCCCcccc
Q 014225          137 -KFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       137 -~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                       .+...++|+++++++   +|+++..
T Consensus        76 ~~~~~~~~Pt~~~~d~---~G~~~~~   98 (135)
T d1sena_          76 FSPDGGYIPRILFLDP---SGKVHPE   98 (135)
T ss_dssp             GCTTCSCSSEEEEECT---TSCBCTT
T ss_pred             HHhhcccceeEEEECC---CCeEEEE
Confidence             234456899999999   9988754

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.97  E-value=2e-10  Score=98.01  Aligned_cols=51  Identities=18%  Similarity=0.261  Sum_probs=42.3

Q ss_pred             ecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChH
Q 014225           55 KVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLN  109 (428)
Q Consensus        55 ~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~  109 (428)
                      .++.++++++++.||++|||||+.++|.|.++++++++    +.+..|++|.+.+
T Consensus        48 ~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~~----~~~~~i~~d~~~~   98 (166)
T d1z6na1          48 RLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQPN----IELAIISKGRAED   98 (166)
T ss_dssp             HHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCTT----EEEEEECHHHHHH
T ss_pred             HHHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCCC----CcEEEEECccCHH
Confidence            45678899999999999999999999999999998754    6677776665433

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.5e-09  Score=90.41  Aligned_cols=75  Identities=13%  Similarity=0.303  Sum_probs=57.0

Q ss_pred             cCCcEEEEEEeccCChhHHhhhHHH---HHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCc
Q 014225          224 LVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP  300 (428)
Q Consensus       224 ~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d  300 (428)
                      -.+|+++|+|+++||++|+.+....   .++.+.+..          ++.++.|+.+...                    
T Consensus        40 ~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~----------~fV~~~v~~~~~e--------------------   89 (147)
T d2dlxa1          40 MQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE----------HFIFWQVYHDSEE--------------------   89 (147)
T ss_dssp             HHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH----------TEEEEEEESSSHH--------------------
T ss_pred             HcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhh----------heeEeeecccchh--------------------
Confidence            4589999999999999999987644   344444544          4777777766432                    


Q ss_pred             chhHHHHhcCcCccceEEEECCC-CcEEec
Q 014225          301 TIKELTKYFDVQGIPCLVIIGPE-GKTVTK  329 (428)
Q Consensus       301 ~~~~~~~~~~v~~~P~~~lid~~-G~i~~~  329 (428)
                       ...+++.|+|.++|++++||+. |+++..
T Consensus        90 -~~~~~~~y~v~~~Pti~~idp~~ge~v~~  118 (147)
T d2dlxa1          90 -GQRYIQFYKLGDFPYVSILDPRTGQKLVE  118 (147)
T ss_dssp             -HHHHHHHHTCCSSSEEEEECTTTCCCCEE
T ss_pred             -hhhhhhheecCceeEEEEEeCCCCeEecc
Confidence             3678899999999999999984 776644

>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: N-terminal, Prx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=98.96  E-value=8.7e-10  Score=93.58  Aligned_cols=120  Identities=13%  Similarity=0.070  Sum_probs=87.6

Q ss_pred             hhccCCCCccc-CCCCC--ceeccccc-CCcEEEEEEe-ccCChhHHhhhHHHHHHHH-HHHhhhhhcCCCCCCEEEEEE
Q 014225          201 LLTNHDRGYLL-GHPPD--EKVPVSSL-VGKTVGLYFS-ARWCIPCEKFMPKLLSIYQ-KIKQNLVEKGDALEDFEVVFV  274 (428)
Q Consensus       201 ~~g~~~p~f~l-~~~g~--~~v~l~~~-~gk~vll~F~-a~wC~~C~~~~~~l~~l~~-~~~~~~~~~~~~~~~~~iv~i  274 (428)
                      +.|+.+|+|++ ...|.  +.++++++ +||+|||+|+ +.++|.|..+...+..... .+..+       + .-.++.+
T Consensus         2 ~~Gd~~Pdftl~~~~~~~~~~~slsd~~~gk~VVL~f~P~afTp~Ct~e~~~~~~~~~~~~~~~-------~-~~~vv~~   73 (163)
T d1nm3a2           2 MEGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKY-------G-VDDILVV   73 (163)
T ss_dssp             CTTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHT-------T-CCEEEEE
T ss_pred             CCCCCCCCeEEEEEcCCCceEEEHHHHhCCCeEEEEEEeccccccchhhhhhhhhhcchhhhhh-------c-ccceeee
Confidence            56999999999 55553  26899995 9999999999 6899999997766555443 33333       1 2245555


Q ss_pred             EcCCCHHHHHHHHhcCCccccccCCcchhHHHHhcCc-----------CccceEEEECCCCcEEecc
Q 014225          275 STDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDV-----------QGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       275 s~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v-----------~~~P~~~lid~~G~i~~~~  330 (428)
                      +++ +.....++...+....++++.|....+++.||+           .+...++||| +|+|++..
T Consensus        74 ~s~-d~~~~~a~~~~~~~~~~~llsD~~~~~~~~~g~~~~~~~~g~g~~s~R~~~Iid-dG~I~~~~  138 (163)
T d1nm3a2          74 SVN-DTFVMNAWKEDEKSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLVK-NGVVEKMF  138 (163)
T ss_dssp             ESS-CHHHHHHHHHHTTCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEEE-TTEEEEEE
T ss_pred             ecC-CHHHHHHHhhhhccCceeeeccCChHHHHHhhhhccccccccccccceEEEEEe-CCEEEEEE
Confidence            555 455566666666667899999999999999986           2445789998 99998764

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.94  E-value=1.4e-09  Score=87.68  Aligned_cols=71  Identities=10%  Similarity=0.111  Sum_probs=57.0

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      +.|.+||.|||+||++|+.  |.+.++++++++...++.+..|.++....                 ..  ...+++.|+
T Consensus        18 ~~~~~lV~Fya~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~~~~~-----------------~~--n~~l~~~~~   76 (122)
T d2c0ga2          18 RFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYGE-----------------LE--NKALGDRYK   76 (122)
T ss_dssp             TSSEEEEEEEESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEECSSTT-----------------CT--THHHHHHTT
T ss_pred             cCCcEEEEEECCCCCcccC--HHHHHHHHHHHHhCCCeEEEecccccccc-----------------cc--CHHHHHHhh
Confidence            4689999999999999994  99999999997765568877777654321                 11  178999998


Q ss_pred             C--CCCceEEEEcC
Q 014225          140 I--EGIPCLVVLQP  151 (428)
Q Consensus       140 v--~~~P~~~lid~  151 (428)
                      +  .++||++++..
T Consensus        77 i~~~~~PTi~~f~~   90 (122)
T d2c0ga2          77 VDDKNFPSIFLFKG   90 (122)
T ss_dssp             CCTTSCCEEEEESS
T ss_pred             cccCCCCcEEEEeC
Confidence            8  57999999985

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=1.7e-09  Score=91.48  Aligned_cols=116  Identities=16%  Similarity=0.236  Sum_probs=82.4

Q ss_pred             ccccccCc-ccc-CCCCEEecccC-CCCEEEEEEe-cCCChhhh-hhHHHHHHHHHHHhcCCCcE-EEEEEecCCChHHH
Q 014225           38 LASKDRDY-LLN-QHGTQVKVSDL-EGKVTALYFS-ANWYPPCG-NFTGVLVDVYEELRNNGSDF-EVVFVSSDEDLNAF  111 (428)
Q Consensus        38 ~g~~~pdf-l~~-~~G~~v~l~~~-~gk~vlv~F~-a~wC~~C~-~~~p~l~~l~~~~~~~~~~~-~ii~vs~D~~~~~~  111 (428)
                      +|+.+|+| |.+ .+|++++++++ +||.|+|+|| +.|+|.|. .+++.+.+.++.+++.|  . ++++++.|... ..
T Consensus         5 VGd~aP~f~l~~~~~~~~v~l~d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~g--~~~i~~~s~~~~~-~~   81 (161)
T d1hd2a_           5 VGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKG--VQVVACLSVNDAF-VT   81 (161)
T ss_dssp             TTCBCCCCEEECSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTT--CCEEEEEESSCHH-HH
T ss_pred             CCCcCCCeEEEecCCCcEEEhHHHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHcC--CeEEEEEecCchh-hh
Confidence            69999999 865 56899999985 8999999999 99999994 58899999999999987  5 45556665443 34


Q ss_pred             HHHHhcCCC-ceec-cCChHHHHHHHhhcCCCC------------CceEEEEcCCCCCCCcccc
Q 014225          112 NNYRACMPW-LAVP-YSDLETKKALNRKFDIEG------------IPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       112 ~~~~~~~~~-~~~~-~~d~~~~~~l~~~~~v~~------------~P~~~lid~~~~dG~i~~~  161 (428)
                      +++...... ..++ .+|.+  .++++.||+..            .-.+++|+.   ||+|...
T Consensus        82 ~~~~~~~~~~~~~~llsD~~--~~~a~~~g~~~~~~~~g~~~~~~s~r~~~I~~---~G~I~~~  140 (161)
T d1hd2a_          82 GEWGRAHKAEGKVRLLADPT--GAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQ---DGIVKAL  140 (161)
T ss_dssp             HHHHHHTTCTTTCEEEECTT--CHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEE---TTEEEEE
T ss_pred             hhhhhhcccccccccccCCc--ceeeeeeeeeeccccCccccccEEeEEEEEEC---CCEEEEE
Confidence            455443332 1122 23443  78899998631            234577777   9988654

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=98.86  E-value=4.5e-10  Score=89.59  Aligned_cols=67  Identities=15%  Similarity=0.233  Sum_probs=48.5

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      .+|+++|.|||+||++|+++.|.+.++++.+..... ...+.+..+..                        ..+...++
T Consensus        19 ~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~-~~~~~~~~~~~------------------------~~~~~~~~   73 (116)
T d2djja1          19 DTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEF-KDRVVIAKVDA------------------------TANDVPDE   73 (116)
T ss_dssp             TTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSC-TTSSEEEEEET------------------------TTSCCSSC
T ss_pred             CCCCEEEEEEecccccccccchHHHHHHHHHhcccc-cceeEEEeccc------------------------chhhhccc
Confidence            468999999999999999999999999999987641 11111111111                        22334689


Q ss_pred             CCCCceEEEEcC
Q 014225          140 IEGIPCLVVLQP  151 (428)
Q Consensus       140 v~~~P~~~lid~  151 (428)
                      |.++|+++++..
T Consensus        74 v~~~Pti~~f~~   85 (116)
T d2djja1          74 IQGFPTIKLYPA   85 (116)
T ss_dssp             CSSSSEEEEECS
T ss_pred             ccCCCEEEEEEC
Confidence            999999999963

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.82  E-value=3.4e-09  Score=85.54  Aligned_cols=72  Identities=18%  Similarity=0.164  Sum_probs=52.0

Q ss_pred             CCCEEEEEEecCCChhh------hhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHH
Q 014225           60 EGKVTALYFSANWYPPC------GNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKA  133 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C------~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~  133 (428)
                      +++.++|.|||+||++|      ....+.+..+++.+.+.+  +.+..|+.+..                        ..
T Consensus        27 ~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~--v~~a~Vd~~~~------------------------~~   80 (124)
T d1a8ya1          27 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKG--VGFGLVDSEKD------------------------AA   80 (124)
T ss_dssp             HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGT--EEEEEEETTTS------------------------HH
T ss_pred             hCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCC--eEEEEEEeecc------------------------cc
Confidence            45789999999999964      333444555555555554  77777655444                        78


Q ss_pred             HHhhcCCCCCceEEEEcCCCCCCCcccc
Q 014225          134 LNRKFDIEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       134 l~~~~~v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +++.|+|.++||++++.    +|+.+..
T Consensus        81 l~~~~~I~~yPTi~~f~----~g~~~~y  104 (124)
T d1a8ya1          81 VAKKLGLTEEDSIYVFK----EDEVIEY  104 (124)
T ss_dssp             HHHTTTCCSTTCEEEEE----SSSEEEC
T ss_pred             hhhccccccCCcEEEec----cCccEEe
Confidence            99999999999999997    5766543

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.70  E-value=5.1e-09  Score=92.87  Aligned_cols=72  Identities=10%  Similarity=0.117  Sum_probs=59.6

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      ++.+|||.||++||++|..+.|.|.+++.+|.           ++.++.|..+.                        ..
T Consensus       119 ~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~-----------~vkF~ki~~~~------------------------~~  163 (217)
T d2trcp_         119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYP-----------MVKFCKIRASN------------------------TG  163 (217)
T ss_dssp             TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT-----------TSEEEEEEHHH------------------------HT
T ss_pred             CCCeEEEEEEcCCCCChhhhhhhHHHHhhhcc-----------cceEEEEcccc------------------------ch
Confidence            45689999999999999999999999998875           46888886652                        12


Q ss_pred             HHHhcCcCccceEEEECCCCcEEecccc
Q 014225          305 LTKYFDVQGIPCLVIIGPEGKTVTKQGR  332 (428)
Q Consensus       305 ~~~~~~v~~~P~~~lid~~G~i~~~~~~  332 (428)
                      +...|++.++||++++ ++|+++.+..+
T Consensus       164 ~~~~~~i~~lPtl~~y-k~G~~v~~~vg  190 (217)
T d2trcp_         164 AGDRFSSDVLPTLLVY-KGGELISNFIS  190 (217)
T ss_dssp             CSTTSCGGGCSEEEEE-ETTEEEEEETT
T ss_pred             hHHhCCCCCCCeEEEE-ECCEEEEEEEC
Confidence            3457899999999999 99999987544

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=3.2e-08  Score=82.04  Aligned_cols=76  Identities=13%  Similarity=0.200  Sum_probs=54.1

Q ss_pred             ccCCCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHH
Q 014225           57 SDLEGKVTALYFSANWYPPCGNFTGVL---VDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKA  133 (428)
Q Consensus        57 ~~~~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~  133 (428)
                      +.-++|+|+|+|+++||++|+.+....   .++.+.+.++   +.++.|+.|..+.                      ..
T Consensus        38 Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~---fV~~~v~~~~~e~----------------------~~   92 (147)
T d2dlxa1          38 GQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREH---FIFWQVYHDSEEG----------------------QR   92 (147)
T ss_dssp             HHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHT---EEEEEEESSSHHH----------------------HH
T ss_pred             HHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhh---eeEeeecccchhh----------------------hh
Confidence            344689999999999999999875433   3333444443   6666665543322                      77


Q ss_pred             HHhhcCCCCCceEEEEcCCCCCCCcc
Q 014225          134 LNRKFDIEGIPCLVVLQPYDDKDDAT  159 (428)
Q Consensus       134 l~~~~~v~~~P~~~lid~~~~dG~i~  159 (428)
                      +.+.|++.++|++++|++  .+|+++
T Consensus        93 ~~~~y~v~~~Pti~~idp--~~ge~v  116 (147)
T d2dlxa1          93 YIQFYKLGDFPYVSILDP--RTGQKL  116 (147)
T ss_dssp             HHHHHTCCSSSEEEEECT--TTCCCC
T ss_pred             hhhheecCceeEEEEEeC--CCCeEe
Confidence            889999999999999997  146554

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.62  E-value=1.3e-08  Score=78.62  Aligned_cols=65  Identities=14%  Similarity=0.221  Sum_probs=47.1

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      .-++|+.|+++||++|....+.|.++..+|.            ++++  .+|.+.                     +.++
T Consensus        15 ~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~------------~~~v--~vd~~~---------------------~~~l   59 (100)
T d1wjka_          15 ALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI------------LQEV--DITLPE---------------------NSTW   59 (100)
T ss_dssp             CCCEEEEEECSSCHHHHHHHHHTSTTSSSSE------------EEEE--ETTSST---------------------THHH
T ss_pred             CCCEEEEEECCCCCChHHHHHHHHHhhhhcc------------eEEE--eccccc---------------------CHHH
Confidence            4568888999999999999999888765543            3344  444332                     3789


Q ss_pred             HHhcCcCccceEEEECCCCcEEec
Q 014225          306 TKYFDVQGIPCLVIIGPEGKTVTK  329 (428)
Q Consensus       306 ~~~~~v~~~P~~~lid~~G~i~~~  329 (428)
                      .+.|++. +|++++   +|+.+..
T Consensus        60 ~~~y~~~-VPvl~i---dg~~~~~   79 (100)
T d1wjka_          60 YERYKFD-IPVFHL---NGQFLMM   79 (100)
T ss_dssp             HHHSSSS-CSEEEE---SSSEEEE
T ss_pred             HHHhccc-CCceee---cCceEEe
Confidence            9999987 997654   5666544

>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Plant peroxiredoxin
species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]

Probab=98.47  E-value=1.8e-07  Score=78.83  Aligned_cols=117  Identities=16%  Similarity=0.253  Sum_probs=82.0

Q ss_pred             cccccccCc-cc----cCCCCEEecccC-CCCEEEEEEe-cCCChhhh-hhHHHHHHHHHHHhcCCCcEEEEEEecCCCh
Q 014225           37 LLASKDRDY-LL----NQHGTQVKVSDL-EGKVTALYFS-ANWYPPCG-NFTGVLVDVYEELRNNGSDFEVVFVSSDEDL  108 (428)
Q Consensus        37 ~~g~~~pdf-l~----~~~G~~v~l~~~-~gk~vlv~F~-a~wC~~C~-~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~  108 (428)
                      .+|+++||| |.    +..+++++++++ +||.|+|+|| +.|++.|. ...|.....++.++..| ..++++|++|...
T Consensus         5 ~vGd~~Pdf~l~~~~~~~~~~~~~l~d~~~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~g-~~~v~~isvd~~~   83 (162)
T d1tp9a1           5 AVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKG-VTEILCISVNDPF   83 (162)
T ss_dssp             CTTCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTT-CCCEEEEESSCHH
T ss_pred             CCCCCCCCeEEEeecCCCCceEEEHHHHhCCCeEEEEEEecccchhhhhhcchHHHHhhhHHHHcC-Ccceeeeeccchh
Confidence            369999999 74    445568999885 9999999988 99999995 66788888888888876 2467788886553


Q ss_pred             HHHHHHHhcCCC-ceec-cCChHHHHHHHhhcCCC-----------CCceEEEEcCCCCCCCcccc
Q 014225          109 NAFNNYRACMPW-LAVP-YSDLETKKALNRKFDIE-----------GIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       109 ~~~~~~~~~~~~-~~~~-~~d~~~~~~l~~~~~v~-----------~~P~~~lid~~~~dG~i~~~  161 (428)
                       ..+++....+. ..++ .+|..  ..+.++|++.           .-=.++|||    ||+|.+.
T Consensus        84 -~~~~~~~~~~~~~~~~~lsD~~--~~~~~~~g~~~~~~~~g~g~~~~R~tfiId----dg~I~~~  142 (162)
T d1tp9a1          84 -VMKAWAKSYPENKHVKFLADGS--ATYTHALGLELDLQEKGLGTRSRRFALLVD----DLKVKAA  142 (162)
T ss_dssp             -HHHHHHHTCTTCSSEEEEECTT--SHHHHHTTCEEEETTTTSEEEECCEEEEEE----TTEEEEE
T ss_pred             -hhhhhhhhcccccccccccchh--hHHHhhhhhccccccccCCcEEEEEEEEEE----CCEEEEE
Confidence             35555554442 1122 22333  6788888863           113467887    7887764

>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: N-terminal, Prx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=98.36  E-value=3.6e-07  Score=76.92  Aligned_cols=116  Identities=15%  Similarity=0.212  Sum_probs=73.7

Q ss_pred             ccccccccCc-cccCCC---CEEecccC-CCCEEEEEEe-cCCChhhhhhHHHHHHH-HHHHhcCCCcEEEEEEecCCCh
Q 014225           36 SLLASKDRDY-LLNQHG---TQVKVSDL-EGKVTALYFS-ANWYPPCGNFTGVLVDV-YEELRNNGSDFEVVFVSSDEDL  108 (428)
Q Consensus        36 ~~~g~~~pdf-l~~~~G---~~v~l~~~-~gk~vlv~F~-a~wC~~C~~~~p~l~~l-~~~~~~~~~~~~ii~vs~D~~~  108 (428)
                      ++.|+++||| |....|   +.++++++ +||.|||+|+ +.+.|.|..+...+... ++.++..+.+. ++.++.+ +.
T Consensus         1 ~~~Gd~~Pdftl~~~~~~~~~~~slsd~~~gk~VVL~f~P~afTp~Ct~e~~~~~~~~~~~~~~~~~~~-vv~~~s~-d~   78 (163)
T d1nm3a2           1 SMEGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDD-ILVVSVN-DT   78 (163)
T ss_dssp             CCTTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCE-EEEEESS-CH
T ss_pred             CCCCCCCCCeEEEEEcCCCceEEEHHHHhCCCeEEEEEEeccccccchhhhhhhhhhcchhhhhhcccc-eeeeecC-CH
Confidence            4679999999 876666   46999996 9998888888 99999999987654444 44444444223 3444443 33


Q ss_pred             HHHHHHHhcC---CCceeccCChHHHHHHHhhcCC-----------CCCceEEEEcCCCCCCCcccc
Q 014225          109 NAFNNYRACM---PWLAVPYSDLETKKALNRKFDI-----------EGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       109 ~~~~~~~~~~---~~~~~~~~d~~~~~~l~~~~~v-----------~~~P~~~lid~~~~dG~i~~~  161 (428)
                      ...+++.+..   +...++  |..  ..+.++|++           .+.-.++|||    ||+|...
T Consensus        79 ~~~~a~~~~~~~~~~~lls--D~~--~~~~~~~g~~~~~~~~g~g~~s~R~~~Iid----dG~I~~~  137 (163)
T d1nm3a2          79 FVMNAWKEDEKSENISFIP--DGN--GEFTEGMGMLVGKEDLGFGKRSWRYSMLVK----NGVVEKM  137 (163)
T ss_dssp             HHHHHHHHHTTCTTSEEEE--CTT--SHHHHHTTCEEECTTTTCCEEECCEEEEEE----TTEEEEE
T ss_pred             HHHHHHhhhhccCceeeec--cCC--hHHHHHhhhhccccccccccccceEEEEEe----CCEEEEE
Confidence            3344444433   322332  332  567777765           2445688887    7988655

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.32  E-value=1.5e-07  Score=83.14  Aligned_cols=69  Identities=10%  Similarity=0.167  Sum_probs=55.2

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcC
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFD  139 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~  139 (428)
                      ++.+|+|+||++||++|+.+.|.|.+++.+|.+    +.++-|+.+.                         ..+...|+
T Consensus       119 ~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~~----vkF~ki~~~~-------------------------~~~~~~~~  169 (217)
T d2trcp_         119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYPM----VKFCKIRASN-------------------------TGAGDRFS  169 (217)
T ss_dssp             TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTT----SEEEEEEHHH-------------------------HTCSTTSC
T ss_pred             CCCeEEEEEEcCCCCChhhhhhhHHHHhhhccc----ceEEEEcccc-------------------------chhHHhCC
Confidence            356899999999999999999999999999855    5677664431                         11345689


Q ss_pred             CCCCceEEEEcCCCCCCCcccc
Q 014225          140 IEGIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       140 v~~~P~~~lid~~~~dG~i~~~  161 (428)
                      +.++|+++++.    +|.++..
T Consensus       170 i~~lPtl~~yk----~G~~v~~  187 (217)
T d2trcp_         170 SDVLPTLLVYK----GGELISN  187 (217)
T ss_dssp             GGGCSEEEEEE----TTEEEEE
T ss_pred             CCCCCeEEEEE----CCEEEEE
Confidence            99999999997    7988765

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.31  E-value=1.8e-06  Score=68.83  Aligned_cols=69  Identities=14%  Similarity=0.230  Sum_probs=49.5

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEc---CCCHHHHHHHHhcCCccccccCCcc
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST---DRDQTSFESYFGTMPWLALPFGDPT  301 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~---d~~~~~~~~~~~~~~~~~~~~~~d~  301 (428)
                      +++.++|.|+++||..|..  |.+.++++.+.+.        .+..+..|.+   |.+.                     
T Consensus        20 ~~~~~lV~F~~~wc~~~~~--~~~~~la~~~~~~--------~~~~~~~V~~~~vd~~~---------------------   68 (122)
T d1g7ea_          20 KSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASS--------DDLLVAEVGISDYGDKL---------------------   68 (122)
T ss_dssp             GSSEEEEEEECSSCCTTTT--HHHHHHHHHGGGC--------SSEEEEEEESCCTTSCH---------------------
T ss_pred             hCCeEEEEEecCCcCcccC--HHHHHHHHHHHHH--------HHHhhhccceeeccccc---------------------
Confidence            4689999999999987764  8899999998764        2333333433   3332                     


Q ss_pred             hhHHHHhcC--cCccceEEEECCCCc
Q 014225          302 IKELTKYFD--VQGIPCLVIIGPEGK  325 (428)
Q Consensus       302 ~~~~~~~~~--v~~~P~~~lid~~G~  325 (428)
                      +..++..|+  |.++||++++ ++|.
T Consensus        69 n~~l~~~~~~~I~~yPTi~~f-~~G~   93 (122)
T d1g7ea_          69 NMELSEKYKLDKESYPVFYLF-RDGD   93 (122)
T ss_dssp             HHHHHHHHTCSSSSCEEEEEE-ESSC
T ss_pred             cHHHHHhhcccccCCCeEEEE-ecCc
Confidence            477887764  7799999999 6664

>d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.11  E-value=6.4e-06  Score=69.45  Aligned_cols=102  Identities=15%  Similarity=0.263  Sum_probs=78.6

Q ss_pred             eecccc-cCCcEEEEEEe-ccCChhHHh-hhHHHHHHHHHH-HhhhhhcCCCCCCE-EEEEEEcCCCHHHHHHHHhcCCc
Q 014225          218 KVPVSS-LVGKTVGLYFS-ARWCIPCEK-FMPKLLSIYQKI-KQNLVEKGDALEDF-EVVFVSTDRDQTSFESYFGTMPW  292 (428)
Q Consensus       218 ~v~l~~-~~gk~vll~F~-a~wC~~C~~-~~~~l~~l~~~~-~~~~~~~~~~~~~~-~iv~is~d~~~~~~~~~~~~~~~  292 (428)
                      .+++++ ++||.|+|++. +...|.|.. .+|.+.+.+++| +.+         ++ +|+.||+| ++-..++|.+..+.
T Consensus        33 ~~~~~d~f~~KkVvl~~vPgAFTp~Cs~~hlp~y~~~~d~f~k~~---------gvd~I~~iSvn-D~fv~~aW~~~~~~  102 (179)
T d1xiya1          33 SIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKEN---------NFDDIYCITNN-DIYVLKSWFKSMDI  102 (179)
T ss_dssp             EEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTS---------CCSEEEEEESS-CHHHHHHHHHHTTC
T ss_pred             EeeHHHHhCCCeEEEEEcccccCCccchhhCcchhhhHHHHHHhc---------CCceEEEEecC-CHHHHHHHHhhcCc
Confidence            566777 58888888777 678999966 799999999998 454         44 79999998 66666777666665


Q ss_pred             cccccCCcchhHHHHhcCcC-----------ccceEEEECCCCcEEecc
Q 014225          293 LALPFGDPTIKELTKYFDVQ-----------GIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       293 ~~~~~~~d~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~  330 (428)
                      -.+.++.|.+.++++.+|+.           +....+||| ||+|.+..
T Consensus       103 ~~I~~lsD~~g~f~k~lg~~~d~~~~g~G~Rs~R~a~iid-dg~I~~~~  150 (179)
T d1xiya1         103 KKIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKMF  150 (179)
T ss_dssp             CSSEEEECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEEE
T ss_pred             ceEEEeeCCchHHHHhhhcccccccCCCeeEEeeEEEEEE-CCEEEEEE
Confidence            56788899999999999862           334578897 89988764

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.09  E-value=3.2e-06  Score=67.23  Aligned_cols=70  Identities=16%  Similarity=0.195  Sum_probs=49.6

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhc-
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKF-  138 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~-  138 (428)
                      +++.++|.|+++||..|..  |.++++++++.+.. +.-+-.|.+..-                   +.+....++..| 
T Consensus        20 ~~~~~lV~F~~~wc~~~~~--~~~~~la~~~~~~~-~~~~~~V~~~~v-------------------d~~~n~~l~~~~~   77 (122)
T d1g7ea_          20 KSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSD-DLLVAEVGISDY-------------------GDKLNMELSEKYK   77 (122)
T ss_dssp             GSSEEEEEEECSSCCTTTT--HHHHHHHHHGGGCS-SEEEEEEESCCT-------------------TSCHHHHHHHHHT
T ss_pred             hCCeEEEEEecCCcCcccC--HHHHHHHHHHHHHH-HHhhhccceeec-------------------cccccHHHHHhhc
Confidence            5789999999999988864  89999999998864 333323332111                   112227788776 


Q ss_pred             -CCCCCceEEEEcC
Q 014225          139 -DIEGIPCLVVLQP  151 (428)
Q Consensus       139 -~v~~~P~~~lid~  151 (428)
                       +|.++||++++..
T Consensus        78 ~~I~~yPTi~~f~~   91 (122)
T d1g7ea_          78 LDKESYPVFYLFRD   91 (122)
T ss_dssp             CSSSSCEEEEEEES
T ss_pred             ccccCCCeEEEEec
Confidence             4789999999984

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.04  E-value=2.7e-05  Score=65.39  Aligned_cols=101  Identities=10%  Similarity=0.107  Sum_probs=63.5

Q ss_pred             ecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC---CC-------------HHH
Q 014225          219 VPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD---RD-------------QTS  282 (428)
Q Consensus       219 v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d---~~-------------~~~  282 (428)
                      +....-..+++|+.|+.+.||+|+++.+.+.++.++.            .+.++.+.+.   .+             ...
T Consensus        29 i~~G~~~a~~tv~vF~D~~CP~C~~~~~~l~~l~~~~------------~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~   96 (169)
T d1v58a1          29 LLDGKKDAPVIVYVFADPFCPYCKQFWQQARPWVDSG------------KVQLRTLLVGVIKPESPATAAAILASKDPAK   96 (169)
T ss_dssp             EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHTT------------SEEEEEEECCCSSTTHHHHHHHHHHSSSHHH
T ss_pred             ceeCCCCCCEEEEEEECCCCcchHHHHHHHHHHHhcc------------ceeEEEEecccCCcchHHHHHHHHhhhCHHH
Confidence            3334444578899999999999999999988776542            4777777653   11             111


Q ss_pred             HHHHHhcCC-c--cccc-cC-------CcchhHHHHhcCcCccceEEEECCCCcEEeccc
Q 014225          283 FESYFGTMP-W--LALP-FG-------DPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG  331 (428)
Q Consensus       283 ~~~~~~~~~-~--~~~~-~~-------~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~  331 (428)
                      ...+..... .  ...+ ..       .+.+..+++.+||.++|++|+.|++|++....|
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~~~~~~G  156 (169)
T d1v58a1          97 TWQQYEASGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQAVG  156 (169)
T ss_dssp             HHHHHHHTTTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEEEEES
T ss_pred             HHHHHHHhhhcccccccchhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEEecC
Confidence            111111111 0  0111 11       123456788899999999999999998765543

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=5.3e-05  Score=62.63  Aligned_cols=93  Identities=17%  Similarity=0.221  Sum_probs=55.4

Q ss_pred             ccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC--C-CHH----------------
Q 014225          221 VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD--R-DQT----------------  281 (428)
Q Consensus       221 l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d--~-~~~----------------  281 (428)
                      +..-.+|.+++.|+.+.||+|+++.|.+.++.+    .         ++.++.+..-  . ...                
T Consensus        21 ~g~~~ak~tIv~FsD~~CpyC~~~~~~l~~~~~----~---------~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~   87 (156)
T d1eeja1          21 YKAPQEKHVITVFTDITCGYCHKLHEQMADYNA----L---------GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNK   87 (156)
T ss_dssp             ECCTTCCEEEEEEECTTCHHHHHHHTTHHHHHH----T---------TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHH
T ss_pred             ecCCCCCEEEEEEeCCCCHHHHHHHHHHHHhhc----c---------CceEEEEeccccccchhhHHHHHHHHHhhhhhh
Confidence            333446889999999999999999999887743    2         3555555431  1 111                


Q ss_pred             HHHHHHhcCCcc--ccccCCcchhHHHHhcCcCccceEEEECCCCcEEe
Q 014225          282 SFESYFGTMPWL--ALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVT  328 (428)
Q Consensus       282 ~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~  328 (428)
                      .+..........  ........+..+++.+||+++|++|+  .||+++.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~i~~~~~la~~lgv~GTPt~~~--~nG~~v~  134 (156)
T d1eeja1          88 AFDDVMAGKSVAPASCDVDIADHYALGVQLGVSGTPAVVL--SNGTLVP  134 (156)
T ss_dssp             HHHHHHTTCCCCCCCCSCCHHHHHHHHHHHTCCSSSEEEC--TTSCEEE
T ss_pred             hhHHHHhccccchhhhcchHHHHHHHHHHcCCcCCCEEEE--eCCeEec
Confidence            111111111111  11111224667899999999999754  5687763

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.97  E-value=2.3e-06  Score=65.59  Aligned_cols=59  Identities=17%  Similarity=0.222  Sum_probs=42.5

Q ss_pred             CCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCC
Q 014225           61 GKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDI  140 (428)
Q Consensus        61 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v  140 (428)
                      .-++++.||++||++|....+.|.++...|       ....+.+|.+..                      ..+.+.|++
T Consensus        15 ~~p~i~lft~~~C~~C~~a~~~L~~~~~~~-------~~~~v~vd~~~~----------------------~~l~~~y~~   65 (100)
T d1wjka_          15 ALPVLTLFTKAPCPLCDEAKEVLQPYKDRF-------ILQEVDITLPEN----------------------STWYERYKF   65 (100)
T ss_dssp             CCCEEEEEECSSCHHHHHHHHHTSTTSSSS-------EEEEEETTSSTT----------------------HHHHHHSSS
T ss_pred             CCCEEEEEECCCCCChHHHHHHHHHhhhhc-------ceEEEecccccC----------------------HHHHHHhcc
Confidence            347889999999999999988887775443       233344444322                      789999998


Q ss_pred             CCCceEEEEc
Q 014225          141 EGIPCLVVLQ  150 (428)
Q Consensus       141 ~~~P~~~lid  150 (428)
                      . +|+++ ||
T Consensus        66 ~-VPvl~-id   73 (100)
T d1wjka_          66 D-IPVFH-LN   73 (100)
T ss_dssp             S-CSEEE-ES
T ss_pred             c-CCcee-ec
Confidence            7 99654 45

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.68  E-value=0.00037  Score=57.81  Aligned_cols=51  Identities=10%  Similarity=0.131  Sum_probs=41.5

Q ss_pred             eecccccCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEc
Q 014225          218 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST  276 (428)
Q Consensus       218 ~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~  276 (428)
                      .+.+.+-.+++.|+.|+...||+|.++.+.+.++.+++.+.        ..+.++.+..
T Consensus        16 ~~~~G~~~a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~--------~~~~~~~~~~   66 (172)
T d1z6ma1          16 GLHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKS--------GKVERIIKLF   66 (172)
T ss_dssp             SEEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHT--------TSEEEEEEEC
T ss_pred             CCeecCCCCCEEEEEEECCCCHhHHHHHHHHhhhhhhhccc--------cceeeeeccc
Confidence            45577777788999999999999999999999999998765        2466666655

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.61  E-value=0.00025  Score=57.98  Aligned_cols=33  Identities=18%  Similarity=0.145  Sum_probs=26.9

Q ss_pred             ccccCCcEEEEEEeccCChhHHhhhHHHHHHHH
Q 014225          221 VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQ  253 (428)
Q Consensus       221 l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~  253 (428)
                      +..-.+|.+++.|+-+.||+|+++.+.+.++.+
T Consensus        21 ~g~~~ak~~I~~FsD~~CPyC~~~~~~l~~l~~   53 (150)
T d1t3ba1          21 YPAKNEKHVVTVFMDITCHYCHLLHQQLKEYND   53 (150)
T ss_dssp             ECCTTCSEEEEEEECTTCHHHHHHHTTHHHHHH
T ss_pred             ECCCCCCEEEEEEECCCCHHHHHHhHHHHHHhc
Confidence            333446788999999999999999999887764

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=97.46  E-value=0.00023  Score=59.52  Aligned_cols=34  Identities=21%  Similarity=0.422  Sum_probs=29.7

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhh
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQN  258 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~  258 (428)
                      .++++|+.|+...||+|..+.+.+.++.+++.+.
T Consensus        17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~   50 (181)
T d1beda_          17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEG   50 (181)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTT
T ss_pred             CCCCEEEEEECCCCccchhhhhhhhhHhhhcccc
Confidence            4688999999999999999999999988887644

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=97.27  E-value=0.00034  Score=58.98  Aligned_cols=47  Identities=19%  Similarity=0.197  Sum_probs=33.2

Q ss_pred             cCCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC
Q 014225          224 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD  277 (428)
Q Consensus       224 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d  277 (428)
                      ..++++|+.|+.-.||+|..+.+.|..+.+.....       ..++.++...+.
T Consensus        16 ~~~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~-------~~~~~~~~~~~~   62 (188)
T d1fvka_          16 VAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKL-------PEGVKMTKYHVN   62 (188)
T ss_dssp             CTTCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTS-------CTTCCEEEEECS
T ss_pred             CCCCCEEEEEECCCChhhHHHHHHHHHHHHHhhcc-------CCceEEEEEecC
Confidence            45688899999999999999998876655443322       334666666553

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=0.0018  Score=53.76  Aligned_cols=99  Identities=8%  Similarity=0.049  Sum_probs=61.7

Q ss_pred             CEEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecC---CC-------------hHHHHHHH
Q 014225           52 TQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSD---ED-------------LNAFNNYR  115 (428)
Q Consensus        52 ~~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D---~~-------------~~~~~~~~  115 (428)
                      ..+....-..+++++.|+-+-||+|+++.+.++++.+..     ++.++.+.+.   .+             ...+..+.
T Consensus        27 ~~i~~G~~~a~~tv~vF~D~~CP~C~~~~~~l~~l~~~~-----~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~  101 (169)
T d1v58a1          27 HWLLDGKKDAPVIVYVFADPFCPYCKQFWQQARPWVDSG-----KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQY  101 (169)
T ss_dssp             CCEEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHTT-----SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHH
T ss_pred             CCceeCCCCCCEEEEEEECCCCcchHHHHHHHHHHHhcc-----ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHH
Confidence            345555555689999999999999999999998876542     3777777642   11             11111222


Q ss_pred             hcCC----CceeccCC------hHHHHHHHhhcCCCCCceEEEEcCCCCCCCc
Q 014225          116 ACMP----WLAVPYSD------LETKKALNRKFDIEGIPCLVVLQPYDDKDDA  158 (428)
Q Consensus       116 ~~~~----~~~~~~~d------~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i  158 (428)
                      ....    ........      .+.+..+++.+|+.++|++++.++   +|++
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~---~g~~  151 (169)
T d1v58a1         102 EASGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSK---ENTL  151 (169)
T ss_dssp             HHTTTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEET---TTEE
T ss_pred             HHhhhcccccccchhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECC---CCCE
Confidence            2111    11111111      123356778899999999999998   8755

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=0.0006  Score=55.98  Aligned_cols=95  Identities=16%  Similarity=0.200  Sum_probs=56.4

Q ss_pred             EecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEec--CC-ChHHH----------------HHH
Q 014225           54 VKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS--DE-DLNAF----------------NNY  114 (428)
Q Consensus        54 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~--D~-~~~~~----------------~~~  114 (428)
                      +.+..-.+|.+++.|.-.-||+|+++.|.+.++.+.    +  +.++.+..  .. .....                .+.
T Consensus        19 iv~g~~~ak~tIv~FsD~~CpyC~~~~~~l~~~~~~----~--~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~   92 (156)
T d1eeja1          19 IVYKAPQEKHVITVFTDITCGYCHKLHEQMADYNAL----G--ITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDV   92 (156)
T ss_dssp             EEECCTTCCEEEEEEECTTCHHHHHHHTTHHHHHHT----T--EEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHH
T ss_pred             eeecCCCCCEEEEEEeCCCCHHHHHHHHHHHHhhcc----C--ceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHH
Confidence            444445678999999999999999999999887542    3  55555542  11 11111                111


Q ss_pred             HhcCCCceec-cCChHHHHHHHhhcCCCCCceEEEEcCCCCCCCcc
Q 014225          115 RACMPWLAVP-YSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDAT  159 (428)
Q Consensus       115 ~~~~~~~~~~-~~d~~~~~~l~~~~~v~~~P~~~lid~~~~dG~i~  159 (428)
                      .......... -.....+..+++.+|++++|++++ .    ||+++
T Consensus        93 ~~~~~~~~~~~~~~i~~~~~la~~lgv~GTPt~~~-~----nG~~v  133 (156)
T d1eeja1          93 MAGKSVAPASCDVDIADHYALGVQLGVSGTPAVVL-S----NGTLV  133 (156)
T ss_dssp             HTTCCCCCCCCSCCHHHHHHHHHHHTCCSSSEEEC-T----TSCEE
T ss_pred             HhccccchhhhcchHHHHHHHHHHcCCcCCCEEEE-e----CCeEe
Confidence            1111110000 112345578999999999998654 3    57554

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=96.97  E-value=0.0019  Score=45.61  Aligned_cols=60  Identities=12%  Similarity=0.215  Sum_probs=40.8

Q ss_pred             EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225          230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF  309 (428)
Q Consensus       230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  309 (428)
                      ++.|..+|||+|.+....|.+       .         ++.+..+.++.+.+                    ..+..+.+
T Consensus         3 v~iYt~~~C~~C~~ak~~L~~-------~---------~i~~~~~~i~~~~~--------------------~~~~~~~~   46 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALDR-------A---------GLAYNTVDISLDDE--------------------ARDYVMAL   46 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH-------T---------TCCCEEEETTTCHH--------------------HHHHHHHT
T ss_pred             EEEEeCCCChhHHHHHHHHHH-------c---------CCceEEEEccCCHH--------------------HHHHHHHh
Confidence            456788999999988766643       2         46667777876643                    13344567


Q ss_pred             CcCccceEEEECCCCcEEe
Q 014225          310 DVQGIPCLVIIGPEGKTVT  328 (428)
Q Consensus       310 ~v~~~P~~~lid~~G~i~~  328 (428)
                      |..++|.+++   +|+.+.
T Consensus        47 g~~tvP~i~i---~g~~ig   62 (74)
T d1r7ha_          47 GYVQAPVVEV---DGEHWS   62 (74)
T ss_dssp             TCBCCCEEEE---TTEEEE
T ss_pred             CCCCcCEEEE---CCEEEe
Confidence            8899998764   565543

>d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.93  E-value=0.0007  Score=56.60  Aligned_cols=100  Identities=11%  Similarity=0.249  Sum_probs=67.4

Q ss_pred             EEecccC-CCCEEEEEEe-cCCChhhhh-hHHHHHHHHHHH-hcCCCcE-EEEEEecCCChHHHHHHHhcCCCceec-cC
Q 014225           53 QVKVSDL-EGKVTALYFS-ANWYPPCGN-FTGVLVDVYEEL-RNNGSDF-EVVFVSSDEDLNAFNNYRACMPWLAVP-YS  126 (428)
Q Consensus        53 ~v~l~~~-~gk~vlv~F~-a~wC~~C~~-~~p~l~~l~~~~-~~~~~~~-~ii~vs~D~~~~~~~~~~~~~~~~~~~-~~  126 (428)
                      +++++++ +||.|+|.+. +..-|.|.. .+|.+.+.|++| +..|  + +|++|++|.. -.++++.+.++...+. .+
T Consensus        33 ~~~~~d~f~~KkVvl~~vPgAFTp~Cs~~hlp~y~~~~d~f~k~~g--vd~I~~iSvnD~-fv~~aW~~~~~~~~I~~ls  109 (179)
T d1xiya1          33 SIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENN--FDDIYCITNNDI-YVLKSWFKSMDIKKIKYIS  109 (179)
T ss_dssp             EEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSC--CSEEEEEESSCH-HHHHHHHHHTTCCSSEEEE
T ss_pred             EeeHHHHhCCCeEEEEEcccccCCccchhhCcchhhhHHHHHHhcC--CceEEEEecCCH-HHHHHHHhhcCcceEEEee
Confidence            5677665 8887766665 778899966 699999999998 5776  4 7888888654 3356666655543322 22


Q ss_pred             ChHHHHHHHhhcCCC-----------CCceEEEEcCCCCCCCcccc
Q 014225          127 DLETKKALNRKFDIE-----------GIPCLVVLQPYDDKDDATLH  161 (428)
Q Consensus       127 d~~~~~~l~~~~~v~-----------~~P~~~lid~~~~dG~i~~~  161 (428)
                      |.+  ..+.+++|+.           +.=..++|+    ||.|.+.
T Consensus       110 D~~--g~f~k~lg~~~d~~~~g~G~Rs~R~a~iid----dg~I~~~  149 (179)
T d1xiya1         110 DGN--SSFTDSMNMLVDKSNFFMGMRPWRFVAIVE----NNILVKM  149 (179)
T ss_dssp             CTT--SHHHHHTTCEEECGGGTCCEEECCEEEEEE----TTEEEEE
T ss_pred             CCc--hHHHHhhhcccccccCCCeeEEeeEEEEEE----CCEEEEE
Confidence            433  6788888762           223356776    7877654

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.92  E-value=0.0015  Score=53.07  Aligned_cols=90  Identities=13%  Similarity=0.125  Sum_probs=52.5

Q ss_pred             EecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEe--cCC-ChHHHHH---------------HH
Q 014225           54 VKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS--SDE-DLNAFNN---------------YR  115 (428)
Q Consensus        54 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs--~D~-~~~~~~~---------------~~  115 (428)
                      +.+..-.+|.+++.|.-.-||+|+++.+.++++.+.    +  ..+..+.  +.. .......               .+
T Consensus        19 ~i~g~~~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~----~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~   92 (150)
T d1t3ba1          19 IVYPAKNEKHVVTVFMDITCHYCHLLHQQLKEYNDL----G--ITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEA   92 (150)
T ss_dssp             EEECCTTCSEEEEEEECTTCHHHHHHHTTHHHHHHT----T--EEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHH
T ss_pred             eEECCCCCCEEEEEEECCCCHHHHHHhHHHHHHhcc----C--ceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhH
Confidence            333444578999999999999999999999888643    3  4444443  221 1111111               11


Q ss_pred             hcCCCc-eeccC-ChHHHHHHHhhcCCCCCceEEEE
Q 014225          116 ACMPWL-AVPYS-DLETKKALNRKFDIEGIPCLVVL  149 (428)
Q Consensus       116 ~~~~~~-~~~~~-d~~~~~~l~~~~~v~~~P~~~li  149 (428)
                      ...... ..... ....+..+++.+||+++|++++.
T Consensus        93 ~~~~~~~~~~~~~~i~~~~~la~~lGv~GTPt~~~~  128 (150)
T d1t3ba1          93 EKGNLPKEVKTPNIVKKHYELGIQFGVRGTPSIVTS  128 (150)
T ss_dssp             HTTCCCSSCCCSSHHHHHHHHHHHHTCCSSCEEECT
T ss_pred             hhhccccchhhhhHHHHHHHHHHhcCcCCCCEEEEc
Confidence            111110 00111 12345788999999999987763

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.78  E-value=0.012  Score=48.19  Aligned_cols=51  Identities=12%  Similarity=0.201  Sum_probs=42.3

Q ss_pred             EEecccCCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEec
Q 014225           53 QVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS  104 (428)
Q Consensus        53 ~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~  104 (428)
                      .+.+.+-.+++.++.|+-..||+|+++.+.+.++.+++.+.+ .+.++.+..
T Consensus        16 ~~~~G~~~a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~-~~~~~~~~~   66 (172)
T d1z6ma1          16 GLHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSG-KVERIIKLF   66 (172)
T ss_dssp             SEEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEC
T ss_pred             CCeecCCCCCEEEEEEECCCCHhHHHHHHHHhhhhhhhcccc-ceeeeeccc
Confidence            355666777899999999999999999999999999998865 466666654

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=96.77  E-value=0.0015  Score=55.60  Aligned_cols=44  Identities=20%  Similarity=0.332  Sum_probs=31.6

Q ss_pred             cCCcEEEEEEeccCChhHHhhhHHHHH---HHHHHHhhhhhcCCCCCCEEEEEEEcC
Q 014225          224 LVGKTVGLYFSARWCIPCEKFMPKLLS---IYQKIKQNLVEKGDALEDFEVVFVSTD  277 (428)
Q Consensus       224 ~~gk~vll~F~a~wC~~C~~~~~~l~~---l~~~~~~~~~~~~~~~~~~~iv~is~d  277 (428)
                      ..+++.|+.||.-+||+|..+.|.|..   +.+.+.          .++.++.+.+.
T Consensus       111 ~~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~----------~~v~~~~~~~~  157 (195)
T d1un2a_         111 VAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLP----------EGVKMTKYHVN  157 (195)
T ss_dssp             CTTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSC----------TTCCEEEEECS
T ss_pred             CCCCceEEEEEecCCccccccchhhhHHHHHHhhcC----------CCcEEEEEecC
Confidence            346888999999999999999997754   333343          35666666553

>d1kbea_ g.49.1.1 (A:) Kinase suppressor of Ras, Ksr {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Kinase suppressor of Ras, Ksr
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.25  E-value=0.0013  Score=42.44  Aligned_cols=33  Identities=21%  Similarity=0.611  Sum_probs=28.1

Q ss_pred             CCcccccccCCCCceeEeccCCCCCCcccccccc
Q 014225          387 GPFICCDCDEQGSGWAYQCLECGYEVHPKCVRAV  420 (428)
Q Consensus       387 ~~~~c~~C~~~g~~~~~~~~~~~~~~~~~~~~~~  420 (428)
                      .++.|.+|+++-. +.|+|.+|+|-.|.+|+..+
T Consensus        13 ~~~tC~~C~~~l~-qg~~C~~C~~~~Hk~C~~~~   45 (49)
T d1kbea_          13 LSQVCNVCQKSMI-FGVKCKHCRLKCHNKCTKEA   45 (49)
T ss_dssp             SSCCCSSSCCSSC-CEEEETTTTEEESSSCTTTS
T ss_pred             CCCCchhhchhhh-CcCCcCCCCChHhHhhcccC
Confidence            3556999999775 78999999999999998653

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=96.02  E-value=0.0064  Score=44.00  Aligned_cols=37  Identities=16%  Similarity=0.273  Sum_probs=28.3

Q ss_pred             EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC
Q 014225          230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD  277 (428)
Q Consensus       230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d  277 (428)
                      ++.|..++||+|.+....|.++...+.           ++.+.-+.++
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~~~-----------~i~~~~~~~~   39 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNERD-----------DFQYQYVDIR   39 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHS-----------SCEEEEECHH
T ss_pred             EEEEeCCCCHhHHHHHHHHHHcCCCCC-----------CceEEEEecC
Confidence            456788999999999888888776665           4667666554

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=95.90  E-value=0.019  Score=40.39  Aligned_cols=59  Identities=12%  Similarity=0.271  Sum_probs=39.2

Q ss_pred             EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225          230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF  309 (428)
Q Consensus       230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  309 (428)
                      +..|..+|||+|.+....|.+       .         ++.+..+.++.+.+.                    .+..+..
T Consensus         3 i~iYs~~~C~~C~~ak~~L~~-------~---------~i~y~~~~i~~~~~~--------------------~~~~~~~   46 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAMEN-------R---------GFDFEMINVDRVPEA--------------------AEALRAQ   46 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH-------T---------TCCCEEEETTTCHHH--------------------HHHHHHT
T ss_pred             EEEEeCCCCccHHHHHHHHHh-------c---------CceeEEEeecCCHHH--------------------HHHHHhc
Confidence            456788999999987776643       2         456667777766431                    2233446


Q ss_pred             CcCccceEEEECCCCcEE
Q 014225          310 DVQGIPCLVIIGPEGKTV  327 (428)
Q Consensus       310 ~v~~~P~~~lid~~G~i~  327 (428)
                      |.+++|.+++   +|..+
T Consensus        47 g~~tvP~i~i---~~~~i   61 (76)
T d1h75a_          47 GFRQLPVVIA---GDLSW   61 (76)
T ss_dssp             TCCSSCEEEE---TTEEE
T ss_pred             CCCCCCEEEE---CCEEE
Confidence            8899999765   45554

>d1faqa_ g.49.1.1 (A:) RAF-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: RAF-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.0034  Score=40.99  Aligned_cols=36  Identities=28%  Similarity=0.529  Sum_probs=30.3

Q ss_pred             CCCCCcccccccCCCCceeEeccCCCCCCcccccccc
Q 014225          384 TGGGPFICCDCDEQGSGWAYQCLECGYEVHPKCVRAV  420 (428)
Q Consensus       384 ~~~~~~~c~~C~~~g~~~~~~~~~~~~~~~~~~~~~~  420 (428)
                      +...+-.|..|++... ..|+|..|++..|.+|...+
T Consensus        10 ~f~~~~~C~~C~~~i~-~g~~C~~C~~~~H~~C~~~v   45 (52)
T d1faqa_          10 TFLKLAFCDICQKFLL-NGFRCQTCGYKFHEHCSTKV   45 (52)
T ss_dssp             CCSSCEECTTSSSEEC-SEEECTTTTCCBCSTTSSSS
T ss_pred             eCCCCcCCccCCCccc-cCCCcCCCCChhhhhhhccc
Confidence            3456889999999764 57999999999999999765

>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: Zinc finger ZZ-type-containing protein 3, ZZZ3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.46  E-value=0.0019  Score=44.93  Aligned_cols=32  Identities=22%  Similarity=0.676  Sum_probs=28.2

Q ss_pred             CcccccccCC-CCceeEeccCC----CCCCccccccc
Q 014225          388 PFICCDCDEQ-GSGWAYQCLEC----GYEVHPKCVRA  419 (428)
Q Consensus       388 ~~~c~~C~~~-g~~~~~~~~~~----~~~~~~~~~~~  419 (428)
                      .+.|++|++. -.|-.|+|..|    ||||...|-..
T Consensus        14 ~~~Cd~C~~~pi~G~R~~C~~Cp~~~d~DLC~~C~~~   50 (69)
T d2fc7a1          14 GFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDC   50 (69)
T ss_dssp             SCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTC
T ss_pred             CeEcCCCCCcCcCCcccCCCCCCCCCCccchHHhhcC
Confidence            5899999997 48899999999    79999999643

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=95.39  E-value=0.012  Score=48.77  Aligned_cols=46  Identities=17%  Similarity=0.182  Sum_probs=34.7

Q ss_pred             CCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEec
Q 014225           59 LEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSS  104 (428)
Q Consensus        59 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~  104 (428)
                      ..+++++|.|+.-.||+|+++.+.|..+.+..+.....+.++...+
T Consensus        16 ~~~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~   61 (188)
T d1fvka_          16 VAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHV   61 (188)
T ss_dssp             CTTCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEEC
T ss_pred             CCCCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEec
Confidence            3578889999999999999999988776665554433466666654

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.36  E-value=0.11  Score=39.67  Aligned_cols=76  Identities=20%  Similarity=0.303  Sum_probs=51.4

Q ss_pred             ccccCCcEEEEEEec-cCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCC
Q 014225          221 VSSLVGKTVGLYFSA-RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGD  299 (428)
Q Consensus       221 l~~~~gk~vll~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~  299 (428)
                      ++.+++.+.++.|-+ ..|+.|..+...|+++..-           .+.+.+.....+...                   
T Consensus        17 ~~~l~~pV~l~~~~~~~~~~~~~e~~~ll~ela~l-----------Sdki~~~~~~~~~~e-------------------   66 (119)
T d1a8la1          17 FSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-----------TDKLSYEIVDFDTPE-------------------   66 (119)
T ss_dssp             GGGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-----------CTTEEEEEEETTSHH-------------------
T ss_pred             HHhCCCCEEEEEEecCCCchhHHHHHHHHHHHHhh-----------CCCeEEEEeccCcch-------------------
Confidence            344555566666664 5799999877777766532           234777666666432                   


Q ss_pred             cchhHHHHhcCcCccceEEEECCCCc---EEec
Q 014225          300 PTIKELTKYFDVQGIPCLVIIGPEGK---TVTK  329 (428)
Q Consensus       300 d~~~~~~~~~~v~~~P~~~lid~~G~---i~~~  329 (428)
                        ..++++.|+|...|++.|.+ +|+   |++.
T Consensus        67 --~~~~~~~~~ver~Ps~~i~~-~g~~~gIrF~   96 (119)
T d1a8la1          67 --GKELAKRYRIDRAPATTITQ-DGKDFGVRYF   96 (119)
T ss_dssp             --HHHHHHHTTCCSSSEEEEEE-TTBCCSEEEE
T ss_pred             --hhhHHHhhccccCceEEEec-CCcccceEEE
Confidence              37889999999999999885 443   5554

>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: CREB-binding protein, CBP
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.29  E-value=0.0018  Score=42.17  Aligned_cols=32  Identities=19%  Similarity=0.636  Sum_probs=26.2

Q ss_pred             CCcccccccCCCCceeEeccCC-CCCCccccccc
Q 014225          387 GPFICCDCDEQGSGWAYQCLEC-GYEVHPKCVRA  419 (428)
Q Consensus       387 ~~~~c~~C~~~g~~~~~~~~~~-~~~~~~~~~~~  419 (428)
                      ..+-|++|++.- +-+|+|..| +|||...|-..
T Consensus         5 ~~~tCd~C~~~i-~~Ry~C~~C~DfDLC~~C~~~   37 (52)
T d1tota1           5 FVYTCNECKHHV-ETRWHCTVCEDYDLCINCYNT   37 (52)
T ss_dssp             SCEEETTTTEEE-SSEEEESSSSSCEECHHHHHH
T ss_pred             eEEECcCCCCcC-CCceECCCCCCcccHHHHhcC
Confidence            367899998753 569999999 79999999543

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=95.29  E-value=0.02  Score=39.96  Aligned_cols=55  Identities=13%  Similarity=0.112  Sum_probs=36.3

Q ss_pred             EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCc
Q 014225           65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP  144 (428)
Q Consensus        65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P  144 (428)
                      ++.|..+||++|.+....|+       ..|  +.+..+.+|.+.+.                     ....+.+|..++|
T Consensus         3 v~iYt~~~C~~C~~ak~~L~-------~~~--i~~~~~~i~~~~~~---------------------~~~~~~~g~~tvP   52 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALD-------RAG--LAYNTVDISLDDEA---------------------RDYVMALGYVQAP   52 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHH-------HTT--CCCEEEETTTCHHH---------------------HHHHHHTTCBCCC
T ss_pred             EEEEeCCCChhHHHHHHHHH-------HcC--CceEEEEccCCHHH---------------------HHHHHHhCCCCcC
Confidence            56788999999999665443       245  55666667766431                     3344556888999


Q ss_pred             eEEEEc
Q 014225          145 CLVVLQ  150 (428)
Q Consensus       145 ~~~lid  150 (428)
                      .++ ++
T Consensus        53 ~i~-i~   57 (74)
T d1r7ha_          53 VVE-VD   57 (74)
T ss_dssp             EEE-ET
T ss_pred             EEE-EC
Confidence            754 44

>d1tbna_ g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus rattus) [TaxId: 10117]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Protein kinase c-gamma
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=95.28  E-value=0.0087  Score=41.06  Aligned_cols=45  Identities=31%  Similarity=0.664  Sum_probs=34.1

Q ss_pred             ccceeeeeccCCCCCcccccccCCCCc---eeEeccCCCCCCccccccccC
Q 014225          374 RHELNLVSEGTGGGPFICCDCDEQGSG---WAYQCLECGYEVHPKCVRAVD  421 (428)
Q Consensus       374 ~~~~~~~~~~~~~~~~~c~~C~~~g~~---~~~~~~~~~~~~~~~~~~~~~  421 (428)
                      .|.+...   ....+-.|..|.+.-.|   ..|+|..|++-.|..|...+.
T Consensus         8 ~H~F~~~---~~~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~v~   55 (66)
T d1tbna_           8 KHKFRLH---SYSSPTFCDHCGSLLYGLVHQGMKCSCCEMNVHRRCVRSVP   55 (66)
T ss_dssp             SCCEEEC---CSSSCCBCSSSCCBCCTTSSSCEEETTTCCEECTTTTTTSC
T ss_pred             CCceEEE---eCCCCcCCcCCCCcccCcccCccccCcccCeEChHHhcccc
Confidence            4666552   33456789999986544   469999999999999997754

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=95.27  E-value=0.061  Score=37.59  Aligned_cols=58  Identities=19%  Similarity=0.307  Sum_probs=36.6

Q ss_pred             EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225          230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF  309 (428)
Q Consensus       230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  309 (428)
                      +..|..++|+.|......|.+    .  .         ++.+.-|+++.+                       .++...|
T Consensus         2 ltLyt~~~C~LCe~A~~~l~~----~--~---------~~~~~~vdI~~d-----------------------~~l~~~y   43 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEALAQ----A--R---------AGAFFSVFIDDD-----------------------AALESAY   43 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH----T--T---------CCCEEEEECTTC-----------------------HHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHh----c--c---------CCcEEEEEccCC-----------------------HHHHHHh
Confidence            345678999999765433321    1  1         456777777765                       5678888


Q ss_pred             CcCccceEEEECCCCcEEe
Q 014225          310 DVQGIPCLVIIGPEGKTVT  328 (428)
Q Consensus       310 ~v~~~P~~~lid~~G~i~~  328 (428)
                      +.. +|.+ ++ .+|....
T Consensus        44 ~~~-IPVl-~~-~~~~~l~   59 (75)
T d1ttza_          44 GLR-VPVL-RD-PMGRELD   59 (75)
T ss_dssp             TTT-CSEE-EC-TTCCEEE
T ss_pred             CCe-eeEE-EE-CCeeEEc
Confidence            865 7954 34 3455544

>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: Zinc finger ZZ-type-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.18  E-value=0.0027  Score=46.03  Aligned_cols=31  Identities=29%  Similarity=0.795  Sum_probs=27.0

Q ss_pred             CcccccccCC-CCceeEeccCC-CCCCcccccc
Q 014225          388 PFICCDCDEQ-GSGWAYQCLEC-GYEVHPKCVR  418 (428)
Q Consensus       388 ~~~c~~C~~~-g~~~~~~~~~~-~~~~~~~~~~  418 (428)
                      ...|++|++. -.|-.|+|..| +|||...|-.
T Consensus        24 ~v~Cd~C~~~~i~G~Ry~C~~C~dyDLC~~C~~   56 (85)
T d2dipa1          24 GIPCNNCKQFPIEGKCYKCTECIEYHLCQECFD   56 (85)
T ss_dssp             CCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHH
T ss_pred             CeECCCCCCCCcCcceEEcCCCCCccchHHHHC
Confidence            4579999875 78899999999 8999999954

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.13  E-value=0.0048  Score=46.74  Aligned_cols=66  Identities=18%  Similarity=0.218  Sum_probs=40.8

Q ss_pred             EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225          230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF  309 (428)
Q Consensus       230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  309 (428)
                      ++.|..+|||+|.+....|.++.-.+           ..+.+.-+..+.+...++.                  .+.+..
T Consensus        14 Vviysk~~Cp~C~~ak~ll~~~~~~~-----------~~~~~~e~d~~~d~~~~~~------------------~l~~~~   64 (105)
T d1ktea_          14 VVVFIKPTCPFCRKTQELLSQLPFKE-----------GLLEFVDITATSDTNEIQD------------------YLQQLT   64 (105)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHSCBCT-----------TSEEEEEGGGSTTHHHHHH------------------HHHHHH
T ss_pred             EEEEECCCCchHHHHHHHHHHhCCcc-----------ceeeeeecccccccHHHHH------------------HHhhcc
Confidence            55788999999998877665432221           2455655555544433332                  234445


Q ss_pred             CcCccceEEEECCCCcEE
Q 014225          310 DVQGIPCLVIIGPEGKTV  327 (428)
Q Consensus       310 ~v~~~P~~~lid~~G~i~  327 (428)
                      |...+|.+|+   +|+.+
T Consensus        65 g~~tvPqIfi---~g~~I   79 (105)
T d1ktea_          65 GARTVPRVFI---GKECI   79 (105)
T ss_dssp             SCCCSCEEEE---TTEEE
T ss_pred             CCCcCcEEEE---CCEEE
Confidence            7789998875   56655

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=95.02  E-value=0.039  Score=45.04  Aligned_cols=43  Identities=19%  Similarity=0.388  Sum_probs=34.0

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEe
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVS  103 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs  103 (428)
                      .+++++|.|+...||+|+.+.+.+.++.+++.+.+ .+....+.
T Consensus        17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~~-~~~~~~~~   59 (181)
T d1beda_          17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGA-KFQKNHVS   59 (181)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTC-EEEEEECS
T ss_pred             CCCCEEEEEECCCCccchhhhhhhhhHhhhccccc-ceeEEecc
Confidence            46888999999999999999999999999986653 23334443

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=95.01  E-value=0.03  Score=39.84  Aligned_cols=60  Identities=15%  Similarity=0.236  Sum_probs=38.8

Q ss_pred             EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225          230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF  309 (428)
Q Consensus       230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  309 (428)
                      +..|..+|||+|.+....|.+       .         ++.+..+.++.+.+.                   ..++.+..
T Consensus         3 I~iys~~~Cp~C~~ak~~L~~-------~---------~i~y~~~di~~~~~~-------------------~~~~~~~~   47 (82)
T d1fova_           3 VEIYTKETCPYCHRAKALLSS-------K---------GVSFQELPIDGNAAK-------------------REEMIKRS   47 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH-------H---------TCCCEEEECTTCSHH-------------------HHHHHHHH
T ss_pred             EEEEeCCCCHhHHHHHHHHHH-------c---------CCCeEEEeccchHHH-------------------HHHHHHHh
Confidence            345778999999987665543       2         455666677654321                   23455566


Q ss_pred             CcCccceEEEECCCCcEE
Q 014225          310 DVQGIPCLVIIGPEGKTV  327 (428)
Q Consensus       310 ~v~~~P~~~lid~~G~i~  327 (428)
                      |...+|.+++   +|+.+
T Consensus        48 g~~tvP~i~i---~~~~I   62 (82)
T d1fova_          48 GRTTVPQIFI---DAQHI   62 (82)
T ss_dssp             SSCCSCEEEE---TTEEE
T ss_pred             CCCCCCeEEE---CCEEE
Confidence            8889998864   56655

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=95.00  E-value=0.05  Score=37.81  Aligned_cols=59  Identities=20%  Similarity=0.212  Sum_probs=38.0

Q ss_pred             EEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhc
Q 014225          230 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF  309 (428)
Q Consensus       230 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  309 (428)
                      ++.|..++||+|.+....|.+.                ++.+..+.++.+..                    ...+.+..
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~~----------------~i~~~~~~v~~~~~--------------------~~~~~~~~   50 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHDK----------------GLSFEEIILGHDAT--------------------IVSVRAVS   50 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH----------------TCCCEEEETTTTCC--------------------HHHHHHHT
T ss_pred             EEEEECCCCHHHHHHHHHHHHc----------------CCCeEEEEccCcHH--------------------HHHHHHHh
Confidence            4567889999999987766542                34455555654321                    23445566


Q ss_pred             CcCccceEEEECCCCcEE
Q 014225          310 DVQGIPCLVIIGPEGKTV  327 (428)
Q Consensus       310 ~v~~~P~~~lid~~G~i~  327 (428)
                      +...+|.+++   +|+.+
T Consensus        51 ~~~tvP~i~i---~g~~I   65 (74)
T d1nm3a1          51 GRTTVPQVFI---GGKHI   65 (74)
T ss_dssp             CCSSSCEEEE---TTEEE
T ss_pred             CCccCCEEEE---CCEEE
Confidence            8889999754   56655

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.77  E-value=0.07  Score=37.40  Aligned_cols=60  Identities=12%  Similarity=0.219  Sum_probs=43.7

Q ss_pred             EEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHHHHhcCc
Q 014225          232 YFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDV  311 (428)
Q Consensus       232 ~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  311 (428)
                      ..+++.|+.|.+.....+++.++..          -..++.-|.   +.                      .++. .|||
T Consensus         5 kVlg~gC~~C~~~~~~v~~a~~e~g----------i~a~v~kv~---d~----------------------~ei~-~ygV   48 (77)
T d1iloa_           5 QIYGTGCANCQMLEKNAREAVKELG----------IDAEFEKIK---EM----------------------DQIL-EAGL   48 (77)
T ss_dssp             EEECSSSSTTHHHHHHHHHHHHHTT----------CCEEEEEEC---SH----------------------HHHH-HHTC
T ss_pred             EEeCCCCccHHHHHHHHHHHHHHcC----------CceEEEEeC---CH----------------------HHHH-HcCC
Confidence            3458999999999988888777653          246666662   32                      5565 4999


Q ss_pred             CccceEEEECCCCcEEecc
Q 014225          312 QGIPCLVIIGPEGKTVTKQ  330 (428)
Q Consensus       312 ~~~P~~~lid~~G~i~~~~  330 (428)
                      .++|.+++   ||+++..+
T Consensus        49 mstPalvI---dg~vv~~G   64 (77)
T d1iloa_          49 TALPGLAV---DGELKIMG   64 (77)
T ss_dssp             SSSSCEEE---TTEEEECS
T ss_pred             cCCCEEEE---CCEEEEEe
Confidence            99999864   67888764

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=94.70  E-value=0.038  Score=38.71  Aligned_cols=54  Identities=17%  Similarity=0.288  Sum_probs=34.5

Q ss_pred             EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCc
Q 014225           65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP  144 (428)
Q Consensus        65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P  144 (428)
                      ++.|..+||++|.+....|.       ..|  +....+.++.+.+.                     ....+..|..++|
T Consensus         3 i~iYs~~~C~~C~~ak~~L~-------~~~--i~y~~~~i~~~~~~---------------------~~~~~~~g~~tvP   52 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAME-------NRG--FDFEMINVDRVPEA---------------------AEALRAQGFRQLP   52 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHH-------HTT--CCCEEEETTTCHHH---------------------HHHHHHTTCCSSC
T ss_pred             EEEEeCCCCccHHHHHHHHH-------hcC--ceeEEEeecCCHHH---------------------HHHHHhcCCCCCC
Confidence            46788999999999655443       344  55556666655431                     2333446788899


Q ss_pred             eEEE
Q 014225          145 CLVV  148 (428)
Q Consensus       145 ~~~l  148 (428)
                      .+++
T Consensus        53 ~i~i   56 (76)
T d1h75a_          53 VVIA   56 (76)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8554

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.63  E-value=0.038  Score=41.45  Aligned_cols=61  Identities=18%  Similarity=0.261  Sum_probs=35.0

Q ss_pred             EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCc
Q 014225           65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP  144 (428)
Q Consensus        65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P  144 (428)
                      ++.|..+|||+|.+....|.    ++.-....+.+.-+..+.+...++                   ..+.+..+...+|
T Consensus        14 Vviysk~~Cp~C~~ak~ll~----~~~~~~~~~~~~e~d~~~d~~~~~-------------------~~l~~~~g~~tvP   70 (105)
T d1ktea_          14 VVVFIKPTCPFCRKTQELLS----QLPFKEGLLEFVDITATSDTNEIQ-------------------DYLQQLTGARTVP   70 (105)
T ss_dssp             EEEEECSSCHHHHHHHHHHH----HSCBCTTSEEEEEGGGSTTHHHHH-------------------HHHHHHHSCCCSC
T ss_pred             EEEEECCCCchHHHHHHHHH----HhCCccceeeeeecccccccHHHH-------------------HHHhhccCCCcCc
Confidence            56788999999999555444    433222225555544444332111                   3344555778899


Q ss_pred             eEEE
Q 014225          145 CLVV  148 (428)
Q Consensus       145 ~~~l  148 (428)
                      .+++
T Consensus        71 qIfi   74 (105)
T d1ktea_          71 RVFI   74 (105)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7654

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.22  E-value=0.16  Score=38.76  Aligned_cols=70  Identities=17%  Similarity=0.310  Sum_probs=47.2

Q ss_pred             cccCCCCEEEEEEec-CCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHH
Q 014225           56 VSDLEGKVTALYFSA-NWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKAL  134 (428)
Q Consensus        56 l~~~~gk~vlv~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l  134 (428)
                      ++.+++.+.++.|.+ ..|+.|......|+++++-    ..++.+.....+....                      ..+
T Consensus        17 ~~~l~~pV~l~~~~~~~~~~~~~e~~~ll~ela~l----Sdki~~~~~~~~~~e~----------------------~~~   70 (119)
T d1a8la1          17 FSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL----TDKLSYEIVDFDTPEG----------------------KEL   70 (119)
T ss_dssp             GGGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT----CTTEEEEEEETTSHHH----------------------HHH
T ss_pred             HHhCCCCEEEEEEecCCCchhHHHHHHHHHHHHhh----CCCeEEEEeccCcchh----------------------hhH
Confidence            345566666666664 5799999866666665443    2236665544433322                      788


Q ss_pred             HhhcCCCCCceEEEEcC
Q 014225          135 NRKFDIEGIPCLVVLQP  151 (428)
Q Consensus       135 ~~~~~v~~~P~~~lid~  151 (428)
                      ++.|++...|++.|.+.
T Consensus        71 ~~~~~ver~Ps~~i~~~   87 (119)
T d1a8la1          71 AKRYRIDRAPATTITQD   87 (119)
T ss_dssp             HHHTTCCSSSEEEEEET
T ss_pred             HHhhccccCceEEEecC
Confidence            99999999999998873

>d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Beta-chimaerin, middle domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.10  E-value=0.023  Score=38.33  Aligned_cols=37  Identities=30%  Similarity=0.644  Sum_probs=29.9

Q ss_pred             CCCcccccccCCC--Cc-eeEeccCCCCCCccccccccCC
Q 014225          386 GGPFICCDCDEQG--SG-WAYQCLECGYEVHPKCVRAVDR  422 (428)
Q Consensus       386 ~~~~~c~~C~~~g--~~-~~~~~~~~~~~~~~~~~~~~~~  422 (428)
                      ..+-+|..|.+.-  .+ ..|+|..|++-.|.+|...+..
T Consensus        13 ~~pt~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~v~~   52 (62)
T d1xa6a3          13 RGPHWCEYCANFMWGLIAQGVRCSDCGLNVHKQCSKHVPN   52 (62)
T ss_dssp             SSCCBCTTTCCBCCTTTTCEECCSSSCCCBCTGGGTTSCS
T ss_pred             CCCCCCcccCccccccccCeEEcCCCCchhhHHHHhhCCC
Confidence            4567899999954  33 5899999999999999977543

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=93.99  E-value=0.027  Score=40.44  Aligned_cols=39  Identities=15%  Similarity=0.299  Sum_probs=29.0

Q ss_pred             EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCC
Q 014225           65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDED  107 (428)
Q Consensus        65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~  107 (428)
                      ++.|..+|||+|.+....|.++.-+++.    +.+..++++.+
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~~~~----i~~~~~~~~~~   41 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNERDD----FQYQYVDIRAE   41 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSS----CEEEEECHHHH
T ss_pred             EEEEeCCCCHhHHHHHHHHHHcCCCCCC----ceEEEEecCCC
Confidence            5778999999999988888887776654    56666655433

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=93.80  E-value=0.084  Score=41.12  Aligned_cols=93  Identities=10%  Similarity=0.084  Sum_probs=60.7

Q ss_pred             CcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhHH
Q 014225          226 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL  305 (428)
Q Consensus       226 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  305 (428)
                      ++++++.|+... .........+.+++++|+++          +.++.+..+..                       ...
T Consensus        23 ~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~k----------i~Fv~vd~~~~-----------------------~~~   68 (133)
T d2djka1          23 GIPLAYIFAETA-EERKELSDKLKPIAEAQRGV----------INFGTIDAKAF-----------------------GAH   68 (133)
T ss_dssp             TSCEEEEECSCS-SSHHHHHHHHHHHHHSSTTT----------SEEEEECTTTT-----------------------GGG
T ss_pred             CCCEEEEEeCCc-hHHHHHHHHHHHHHHHhcCc----------eEEEEEeHHHh-----------------------HHH
Confidence            567777777653 34567788888999988865          66666654422                       345


Q ss_pred             HHhcCc--CccceEEEECCCCcEEeccccchhhcccccCCCCChHHHHHHHHHHHHHHhcC
Q 014225          306 TKYFDV--QGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNL  364 (428)
Q Consensus       306 ~~~~~v--~~~P~~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~  364 (428)
                      .+.||+  ...|.+++++.++...+.....         -+++   .+.|.+.++..+.+.
T Consensus        69 l~~~gl~~~~~P~~~i~~~~~~~~~~~~~~---------~~i~---~~~i~~Fi~d~~~Gk  117 (133)
T d2djka1          69 AGNLNLKTDKFPAFAIQEVAKNQKFPFDQE---------KEIT---FEAIKAFVDDFVAGK  117 (133)
T ss_dssp             TTTTTCCSSSSSEEEEECTTTCCBCCCCSS---------SCCC---HHHHHHHHHHHHHTC
T ss_pred             HHHhcCCcccCCcEEEEEcCCCceecCCcc---------ccCC---HHHHHHHHHHHHcCC
Confidence            666787  4689999998887655543111         0234   355677777777765

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=93.38  E-value=0.08  Score=37.46  Aligned_cols=56  Identities=11%  Similarity=0.256  Sum_probs=34.9

Q ss_pred             EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCc
Q 014225           65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP  144 (428)
Q Consensus        65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P  144 (428)
                      +..|..+|||+|.+....|+    +   .|  +.+..+.++.+.+.                    ...+.+..|..++|
T Consensus         3 I~iys~~~Cp~C~~ak~~L~----~---~~--i~y~~~di~~~~~~--------------------~~~~~~~~g~~tvP   53 (82)
T d1fova_           3 VEIYTKETCPYCHRAKALLS----S---KG--VSFQELPIDGNAAK--------------------REEMIKRSGRTTVP   53 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHH----H---HT--CCCEEEECTTCSHH--------------------HHHHHHHHSSCCSC
T ss_pred             EEEEeCCCCHhHHHHHHHHH----H---cC--CCeEEEeccchHHH--------------------HHHHHHHhCCCCCC
Confidence            45678999999998554443    3   24  44555556555331                    14555666778899


Q ss_pred             eEEEEc
Q 014225          145 CLVVLQ  150 (428)
Q Consensus       145 ~~~lid  150 (428)
                      .++ ++
T Consensus        54 ~i~-i~   58 (82)
T d1fova_          54 QIF-ID   58 (82)
T ss_dssp             EEE-ET
T ss_pred             eEE-EC
Confidence            764 45

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.29  E-value=0.25  Score=34.43  Aligned_cols=53  Identities=17%  Similarity=0.271  Sum_probs=38.5

Q ss_pred             EEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCce
Q 014225           66 LYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPC  145 (428)
Q Consensus        66 v~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P~  145 (428)
                      |..+++.|+.|.......++..+++   |.+.++.-|                       .|.   .++. .||+.++|+
T Consensus         4 IkVlg~gC~~C~~~~~~v~~a~~e~---gi~a~v~kv-----------------------~d~---~ei~-~ygVmstPa   53 (77)
T d1iloa_           4 IQIYGTGCANCQMLEKNAREAVKEL---GIDAEFEKI-----------------------KEM---DQIL-EAGLTALPG   53 (77)
T ss_dssp             EEEECSSSSTTHHHHHHHHHHHHHT---TCCEEEEEE-----------------------CSH---HHHH-HHTCSSSSC
T ss_pred             EEEeCCCCccHHHHHHHHHHHHHHc---CCceEEEEe-----------------------CCH---HHHH-HcCCcCCCE
Confidence            3445899999999988888877765   434666654                       122   5665 499999999


Q ss_pred             EEE
Q 014225          146 LVV  148 (428)
Q Consensus       146 ~~l  148 (428)
                      +++
T Consensus        54 lvI   56 (77)
T d1iloa_          54 LAV   56 (77)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            776

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=91.74  E-value=0.18  Score=34.68  Aligned_cols=55  Identities=15%  Similarity=0.222  Sum_probs=33.5

Q ss_pred             EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCc
Q 014225           65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP  144 (428)
Q Consensus        65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P  144 (428)
                      ++.|..++||+|.+....|.+       .|  +....+.+|.+..                  .   ..+.+..+...+|
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~-------~~--i~~~~~~v~~~~~------------------~---~~~~~~~~~~tvP   56 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHD-------KG--LSFEEIILGHDAT------------------I---VSVRAVSGRTTVP   56 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH-------HT--CCCEEEETTTTCC------------------H---HHHHHHTCCSSSC
T ss_pred             EEEEECCCCHHHHHHHHHHHH-------cC--CCeEEEEccCcHH------------------H---HHHHHHhCCccCC
Confidence            467889999999996655543       23  4444445554321                  1   3444566778899


Q ss_pred             eEEEEc
Q 014225          145 CLVVLQ  150 (428)
Q Consensus       145 ~~~lid  150 (428)
                      .+ +++
T Consensus        57 ~i-~i~   61 (74)
T d1nm3a1          57 QV-FIG   61 (74)
T ss_dssp             EE-EET
T ss_pred             EE-EEC
Confidence            75 444

>d1r79a_ g.49.1.1 (A:) Diacylglycerol kinase delta {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Diacylglycerol kinase delta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.46  E-value=0.075  Score=38.03  Aligned_cols=45  Identities=24%  Similarity=0.414  Sum_probs=32.6

Q ss_pred             ccceeeeeccCCCCCcccccccCCCC---c-eeEeccCCCCCCccccccccC
Q 014225          374 RHELNLVSEGTGGGPFICCDCDEQGS---G-WAYQCLECGYEVHPKCVRAVD  421 (428)
Q Consensus       374 ~~~~~~~~~~~~~~~~~c~~C~~~g~---~-~~~~~~~~~~~~~~~~~~~~~  421 (428)
                      +|-+..   .....+-.|..|++.-.   + ..|+|..|++-.|.+|.....
T Consensus        27 ~H~w~~---~n~~~~~~C~~C~~~i~~~~~~qg~~C~~C~~~~H~~C~~~v~   75 (84)
T d1r79a_          27 PHQWLE---GNLPVSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESLL   75 (84)
T ss_dssp             CCCEEE---SCCCTTCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHHHCC
T ss_pred             CceEEe---CCCCCCCCCcccCcccCCccccCcEecCcCCchhhhhhcCCCC
Confidence            455543   23335679999998542   2 479999999999999987653

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.37  E-value=0.38  Score=36.78  Aligned_cols=104  Identities=11%  Similarity=0.088  Sum_probs=63.2

Q ss_pred             CCcEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcCCCHHHHHHHHhcCCccccccCCcchhH
Q 014225          225 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE  304 (428)
Q Consensus       225 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  304 (428)
                      .|.++++.|+.+. ..-......+.+++++|+++          +.++.++.+.                       ...
T Consensus        16 ~~~Pl~~~f~~~~-~~~~~~~~~~~~vAk~fkgk----------i~Fv~~D~~~-----------------------~~~   61 (125)
T d2b5ea3          16 SGLPLGYLFYNDE-EELEEYKPLFTELAKKNRGL----------MNFVSIDARK-----------------------FGR   61 (125)
T ss_dssp             TTSCEEEEEESSH-HHHHHHHHHHHHHHHHTTTT----------CEEEEEEHHH-----------------------HTT
T ss_pred             cCCCEEEEEeCCh-HHHHHHHHHHHHHHHHhcCe----------eEEEEEchHH-----------------------hHH
Confidence            4778888888753 23446788888999999876          6677776542                       145


Q ss_pred             HHHhcCcC-ccceEEEECCCCcEEeccc--cchhhcccccCCCCChHHHHHHHHHHHHHHhcCC
Q 014225          305 LTKYFDVQ-GIPCLVIIGPEGKTVTKQG--RNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLP  365 (428)
Q Consensus       305 ~~~~~~v~-~~P~~~lid~~G~i~~~~~--~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~~  365 (428)
                      ..+.||+. ..|.+++++.+....+...  ......+-...-+++.   +.|.+.+++.+.+..
T Consensus        62 ~l~~fgl~e~~P~~~i~~~~~~~ky~~~~~~~~~~~~~~~~~e~t~---~~i~~F~~d~l~GKl  122 (125)
T d2b5ea3          62 HAGNLNMKEQFPLFAIHDMTEDLKYGLPQLSEEAFDELSDKIVLES---KAIESLVKDFLKGDA  122 (125)
T ss_dssp             HHHHTTCCSCSSEEEEEETTTTEEEECCCCCHHHHHTCCSCCCCCH---HHHHHHHHHHHHTCC
T ss_pred             HHHHcCCCccCCcEEEEecccCcccccchhhhhhcccccccccCCH---HHHHHHHHHHHcCCc
Confidence            67788885 4899999877665554421  1111111111113444   556777777777653

>d1ptqa_ g.49.1.1 (A:) Protein kinase C-delta (PKCdelta) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Protein kinase C-delta (PKCdelta)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.54  E-value=0.084  Score=33.61  Aligned_cols=37  Identities=32%  Similarity=0.644  Sum_probs=29.2

Q ss_pred             CCCCCcccccccCCCCc---eeEeccCCCCCCcccccccc
Q 014225          384 TGGGPFICCDCDEQGSG---WAYQCLECGYEVHPKCVRAV  420 (428)
Q Consensus       384 ~~~~~~~c~~C~~~g~~---~~~~~~~~~~~~~~~~~~~~  420 (428)
                      +...+-+|..|.+.-.|   =.|+|.+|++-.|.+|...+
T Consensus         7 ~~~~~~~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~v   46 (50)
T d1ptqa_           7 NYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKV   46 (50)
T ss_dssp             CCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTTS
T ss_pred             cCCCCcCCcccCCcccCcccCcEECCCCCCeeChhHcccc
Confidence            34457899999985543   26999999999999998654

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=87.27  E-value=0.12  Score=43.21  Aligned_cols=42  Identities=24%  Similarity=0.355  Sum_probs=30.4

Q ss_pred             CCCEEEEEEecCCChhhhhhHHHHH---HHHHHHhcCCCcEEEEEEec
Q 014225           60 EGKVTALYFSANWYPPCGNFTGVLV---DVYEELRNNGSDFEVVFVSS  104 (428)
Q Consensus        60 ~gk~vlv~F~a~wC~~C~~~~p~l~---~l~~~~~~~~~~~~ii~vs~  104 (428)
                      .+++.++.|+.-+||+|..+.|.|.   ++.+.+++   ++.++.+.+
T Consensus       112 ~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~---~v~~~~~~~  156 (195)
T d1un2a_         112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPE---GVKMTKYHV  156 (195)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCT---TCCEEEEEC
T ss_pred             CCCceEEEEEecCCccccccchhhhHHHHHHhhcCC---CcEEEEEec
Confidence            4688899999999999999999876   44444443   355555443

>d1wiga1 g.39.1.3 (A:1-32) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Actin-binding LIM protein 2, abLIM2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.72  E-value=0.26  Score=26.98  Aligned_cols=29  Identities=24%  Similarity=0.504  Sum_probs=21.0

Q ss_pred             CCcccccccCCCCceeEeccCCCCCCccccc
Q 014225          387 GPFICCDCDEQGSGWAYQCLECGYEVHPKCV  417 (428)
Q Consensus       387 ~~~~c~~C~~~g~~~~~~~~~~~~~~~~~~~  417 (428)
                      +.-+|+.|++.-.|-+-.--  +-..||.||
T Consensus         4 gssgC~~C~~~ItGkVLEAG--~khYHP~CA   32 (32)
T d1wiga1           4 GSSGCDSCEKYITGRVLEAG--EKHYHPSCA   32 (32)
T ss_dssp             SCCSCSSSCCCCSSCCBCCS--SCCBCTTTS
T ss_pred             ccchhhhhhhhhhhhhhhcc--ccccCCCCC
Confidence            46689999998887665433  345699996

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=82.38  E-value=1.5  Score=30.08  Aligned_cols=52  Identities=17%  Similarity=0.240  Sum_probs=32.5

Q ss_pred             EEEEecCCChhhhhhHHHHHHHHHHHhcCCCcEEEEEEecCCChHHHHHHHhcCCCceeccCChHHHHHHHhhcCCCCCc
Q 014225           65 ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIP  144 (428)
Q Consensus        65 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~ii~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~v~~~P  144 (428)
                      +..|..++|+.|......|.    +  ..+  +++..|+++.+                        ..+.++|+.. +|
T Consensus         2 ltLyt~~~C~LCe~A~~~l~----~--~~~--~~~~~vdI~~d------------------------~~l~~~y~~~-IP   48 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEALA----Q--ARA--GAFFSVFIDDD------------------------AALESAYGLR-VP   48 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHHH----H--TTC--CCEEEEECTTC------------------------HHHHHHHTTT-CS
T ss_pred             EEEECCCCccHHHHHHHHHH----h--ccC--CcEEEEEccCC------------------------HHHHHHhCCe-ee
Confidence            45678999999987543332    2  123  55666666654                        4667778765 79


Q ss_pred             eEEEEc
Q 014225          145 CLVVLQ  150 (428)
Q Consensus       145 ~~~lid  150 (428)
                      .+ .++
T Consensus        49 Vl-~~~   53 (75)
T d1ttza_          49 VL-RDP   53 (75)
T ss_dssp             EE-ECT
T ss_pred             EE-EEC
Confidence            54 344

>d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Atu2684-like
domain: Hypothetical protein Atu2684
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=80.06  E-value=3  Score=35.06  Aligned_cols=39  Identities=26%  Similarity=0.280  Sum_probs=30.0

Q ss_pred             cEEEEEEeccCChhHHhhhHHHHHHHHHHHhhhhhcCCCCCCEEEEEEEcC
Q 014225          227 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD  277 (428)
Q Consensus       227 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~~~~~~~iv~is~d  277 (428)
                      +.||=.|.+.||..|..--..|.+|.+.            +++-.+++.+|
T Consensus         6 ~aVVElFTSqgCssCPpAd~~L~~L~~~------------~~Vi~La~HVd   44 (225)
T d2axoa1           6 KGVVELFTSQGCASCPPADEALRKMIQK------------GDVVGLSYHVD   44 (225)
T ss_dssp             CCEEEEEECTTCTTCHHHHHHHHHHHHH------------TSSEEEEEECS
T ss_pred             CcEEEEeeCCCCCCCHHHHHHHHHhhCC------------CCEEEEEeccc
Confidence            3455567789999999988888888642            25888888887