Citrus Sinensis ID: 014227

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------43
Protein Sequence
MTKRARLTPADTPEKKENMEDWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNFTTALDFAGIGKDIIFPSKEEKSEYVCWVNKILSLHKGSNINKFRIRCTLDNSHGRDITNWIYTATAKKVQNFELDFWPPSHINDYAFPLERYNFLKRGHGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRYSGKDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVHLHQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEKMIIKPSSSRRKRALKHCANMLKDKLPQGVDLVVGSL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccEEcccccccccccHHHHHHHHHHHHHHHHccccccccEEEEEEEcccccccHHHHHHHHHHHccccEEEEEEccccccccccccccccccccccccccccccccEEEEEEEEEEccHHHHHHHccHHHHEEEEEcccccccEEEEEEcccEEEEEEEEEcccEEEEEEccccEEEEEEccccEEEEcccccEEEEEEEccccccEEccccccccccccEEEEEEEEEcEEEEEccccccccEEEEEEEEEccccccHHHHHHHHcccccccEEEEEEEEcccccccccccccccccccEEEEEEEEEEccccHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHcccccccEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccEEcccccccccccccccHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHcccccEEEEEEEEEcccccHHHHHHHHHHHHHccccEEEEEEcccccccccccccccEEEEEccccccccHHHcEEEEEEEEEccHHHHHHHHccccHHEEEEEEcccccEEEEEEEccccEEEEEEccccccEEEEEccccEEEEEccccccEEEEcccccEEEEEEccccccHHHHHHHHHHHccccEEEEEEcccHEHccccccccccccHEEEEEEccccHHHHHHHHHHHHcccccEEEEEEcccccccccccccccHHHHHcEEEEEEEcccccHHHHHHHHHHHHHHHHHHEEEEEccccccHHHHHHHHHHHHcccccccEEEEccc
Coil and Loop (DISEMBL)
mtkrarltpadtpekkenmedwfskfpddiLVNIISRLTLKEAARTSVLSSRWKYLWNFTTaldfagigkdiifpskeekseYVCWVNKILSLhkgsninkfrirctldnshgrditNWIYTATAKKVQnfeldfwppshindyafpleRYNFlkrghglsgIKSLRSLCLNALKVSGEVLEFFIhscphlehlyvanssellSLKVvgssiplkyldihycysMKEIEISASSLVSFrysgkdiklhvgnvpqlVDVVIHGAPLFQVRYFIGLVvccfpqlktldlecCNEVFMEfghwelpkllhlkltitepncesllGLSFVLKACPFLQKLVIKIWNNnrtigekrhqipvhLHQHLKVVElhefrwlqidpeIAFFIFRNAKVLEKMIIKPSSSRRKRALKHCANMLKdklpqgvdlvvgsl
Flexible Loop (DISEMBL)
mtkrarltpadtpekkenmedwfskfpDDILVNIISRLTLKEAARTSVLSSRWKYLWNFTTALDFAGIGKDIIFPSKEEKSEYVCWVNKILSlhkgsninkFRIRCTldnshgrdITNWIYTATAKKVQNFELDFWPPSHINDYAFPLERYNFLKRGHGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRYSGKDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVHLHQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEKmiikpsssrrKRALKHCANmlkdklpqgvdlvvgsl
Low Complexity Region (SEG)
MTKRARLTPADTPEKKENMEDWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNFTTALDFAGIGKDIIFPSKEEKSEYVCWVNKILSLHKGSNINKFRIRCTLDNSHGRDITNWIYTATAKKVQNFELDFWPPSHINDYAFPLERYNFLKRGHGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRYSGKDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVHLHQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEKMIIKPSSSRRKRALKHCANMLKDKLPQGVDLVVGSL
Disordered region (IsUnstruct)
********************DWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNFTTALDFAGIGKDIIFPSKEEKSEYVCWVNKILSLHKGSNINKFRIRCTLDNSHGRDITNWIYTATAKKVQNFELDFWPPSHINDYAFPLERYNFLKRGHGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRYSGKDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVHLHQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEKMII*********************************
Disordered Region (DISOPRED)
************************KFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNFTTALDFAGIGKDIIFPSKEEKSEYVCWVNKILSLHKGSNINKFRIRCTLDNSHGRDITNWIYTATAKKVQNFELDFWPPSHINDYAFPLERYNFLKRGHGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRYSGKDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRT**EKRHQIPVHLHQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEKMIIKPSSSRRKRALKHCANMLKDKLPQGVDLVVGSL
Disordered Region (DISEMBL)
***************KENMEDWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNFTTALDFAGIGKDIIFPSKEEKSEYVCWVNKILSLHKGSNINKFRIRCTLDNSHGRDITNWIYTATAKKVQNFELDFWPPSHINDYAFPLERYNFLKRGHGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRYSGKDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVHLHQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEKMIIKP********LKHCANMLKDKLPQGVDLVVGSL
Disordered Region (DISPRO)
*******************EDWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNFTTALDFAGIGKDIIFPSKEEKSEYVCWVNKILSLHKGSNINKFRIRCTLDNSHGRDITNWIYTATAKKVQNFELDFWPPSHINDYAFPLERYNFLKRGHGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRYSGKDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVHLHQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEKMIIKPSSSRRKRALKHCANMLKDKLPQGVDLVVGSL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTKRARLTPADTPEKKENMEDWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNFTTALDFAGIGKDIIFPSKEEKSEYVCWVNKILSLHKGSNINKFRIRCTLDNSHGRDITNWIYTATAKKVQNFELDFWPPSHINDYAFPLERYNFLKRGHGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRYSGKDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVHLHQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEKMIIKPSSSRRKRALKHCANMLKDKLPQGVDLVVGSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	428	2.2.26 [Sep-21-2011]
Q9FI16	481	FBD-associated F-box prot	yes	no	0.883	0.785	0.245	1e-14
Q0WR05	457	F-box/LRR-repeat protein	no	no	0.514	0.481	0.276	3e-14
Q9FGQ3	444	F-box/FBD/LRR-repeat prot	no	no	0.843	0.813	0.260	2e-13
Q9FF23	456	Putative F-box protein At	no	no	0.492	0.462	0.302	2e-13
Q93ZX6	327	F-box/LRR-repeat protein	no	no	0.483	0.633	0.312	3e-13
Q9LXR4	454	Putative F-box/LRR-repeat	no	no	0.399	0.376	0.320	4e-13
Q9LXR6	457	Putative F-box protein At	no	no	0.446	0.417	0.301	6e-13
Q9FZ70	416	F-box/FBD/LRR-repeat prot	no	no	0.439	0.451	0.281	1e-12
Q8GW80	484	F-box/LRR-repeat protein	no	no	0.492	0.435	0.277	1e-12
Q9FM94	421	FBD-associated F-box prot	no	no	0.883	0.897	0.234	2e-12

>sp|Q9FI16|FBD18_ARATH FBD-associated F-box protein At5g44490 OS=Arabidopsis thaliana GN=At5g44490 PE=2 SV=3

 Score = 81.3 bits (199), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 108/440 (24%), Positives = 180/440 (40%), Gaps = 62/440 (14%)

Query: 20  EDWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNFTTALDFAGIGKDIIFPSKEE 79
           ED  SK  D ++  ++  L  KEA  TSVLSSRWK +W     LD         FPS   
Sbjct: 16  EDLMSKLTDALISQVLFYLPTKEAVSTSVLSSRWKSVWLLIPDLDLNSSA----FPS--- 68

Query: 80  KSEYVCWVNKILSLHKGSNINKFRIRCTLDNSHGRD----ITNWIYTATAKKVQNFELD- 134
            + +V +++K +   K  N    +++ ++   H  D    +T WI      K+++ +++ 
Sbjct: 69  NNAFVGFIDKFIDFSKIENSCLHKLKLSIRKEHENDNKSCVTRWIGFVATHKLKHLDVEC 128

Query: 135 -FWPPSHINDYAFPLERYN----FLKRGHG--LSGIKSLRSLCLNALKVSGEV------L 181
             W    +     PL  Y     F  R H   L  ++S+   CL  + +   V      L
Sbjct: 129 LLWKKKCLE--VMPLTLYITQTLFYLRLHRVLLGNVESISLPCLKTMHLEQNVYANETCL 186

Query: 182 EFFIHSCPHLEHLYVANSSE-------LLSLKVVGSSIPLKYLD----IHYCYSMKEIEI 230
           EFFI SCP LE L +    +       +LS  +    +   Y +     H  YS+    +
Sbjct: 187 EFFISSCPVLEDLSIVRKVDDNVKVLRVLSQTLTSLFVAFDYGEHRRGFHGYYSLDFGVL 246

Query: 231 SASSLVSFRYSGKDIKLH--VGNVPQLVDVVIHGAPLFQVR----------YFIGLVVCC 278
             +  + +   G DI     V N+  L  + I G  LF +           +FIG+    
Sbjct: 247 IDAPRLKYLKIGDDISRSKIVSNMDSLAKIEIVG--LFYIERAFHNKVARNFFIGI---- 300

Query: 279 FPQLKTLDLECCNEVFMEF---GHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQK 335
             +++ + +      FM F        P+  +L     + +    + LS  L   P L+ 
Sbjct: 301 -SRVRDMIISDRAMWFMSFYFLREESTPQFCNLSSLEVKISWSRGINLSMFLDNSPNLKS 359

Query: 336 LVIKIWNNNRTIGEKRHQIPVHLHQHLKVVE--LHEFRWLQIDPEIAFFIFRNAKVLEKM 393
           +V+ I+  N         +P  L   L+ VE  +  F  + +   IA F   N+ VL+K+
Sbjct: 360 MVLVIYCKNLEKSVSFSSVPQCLLSSLEFVEIKISRFGIISLGIGIARFFVENSVVLKKL 419

Query: 394 IIKPSSSRRKRALKHCANML 413
           ++  S   RK++L    N+L
Sbjct: 420 VVHSSRPMRKKSLVAFENLL 439

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WR05|FBL39_ARATH F-box/LRR-repeat protein At2g42730 OS=Arabidopsis thaliana GN=At2g42730 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 114/246 (46%), Gaps = 26/246 (10%)

Query: 18  NMEDWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNFTTALDFAGIGKDIIFPSK 77
           N +D  S+ PD++L  I+S ++ KEA  TSVLS RWK ++   + LD     +  +  +K
Sbjct: 2   NAKDVISRLPDEVLGRILSLISTKEAVSTSVLSKRWKNMFVLVSNLDID--DRQSVPKTK 59

Query: 78  EEKSE----YVCWVNKILSLHKGSNINKFRIRCTLDNSHGRD---ITNWIYTATAKKVQN 130
           + + E    Y+ +V+K+L   +GS+I K  ++  +    G D   I +WI       V +
Sbjct: 60  QNRIEIHRNYMAFVDKLLDTQRGSSIKKLTLKSHVGVRGGTDSSRIQSWICNVLDHGVMD 119

Query: 131 FELDFW-----PPSHINDYAFPLERYNFLKRGHGLS-------GIKSLRSLCLNALKVSG 178
            ++        PP  +    F  +    L+ G G +        +  LR+LCL+++   G
Sbjct: 120 LDVFITLKGKSPP--VPAMIFKSKTLVKLRVGRGFTIKLSQDVSLPLLRTLCLDSVNFVG 177

Query: 179 --EVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLV 236
              V+   I  CP LE L V      +      SS  LK L I +      I + A +L+
Sbjct: 178 GHNVVGTLISRCPVLEEL-VVEERRCVDWTCSVSSPSLKRLHIRFDRKFTSISLDAPNLI 236

Query: 237 SFRYSG 242
            +++SG
Sbjct: 237 YYKHSG 242

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGQ3|FDL37_ARATH F-box/FBD/LRR-repeat protein At5g53840 OS=Arabidopsis thaliana GN=At5g53840 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 106/407 (26%), Positives = 177/407 (43%), Gaps = 46/407 (11%)

Query: 20  EDWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNFTTALDFAGIGKDIIFPSKEE 79
           E+  S+ PD ++  I+S L+ K+A RTS+LS+RW+ LW     LD         F S+E 
Sbjct: 17  EERLSQLPDHLICVILSHLSTKDAVRTSILSTRWRNLWQLVPVLD---------FDSREL 67

Query: 80  K--SEYVCWVNKILSLHKGSNINKFRIRCTLDNSHGRDITNWIYTATAKKVQNFELDFWP 137
           +  SE+V +      LHK S I K R+ C  D +    +T+WI   T  ++Q+ ++  + 
Sbjct: 68  RSFSEFVSFAGSFFYLHKDSYIQKLRV-CIYDLAGNYYLTSWIDLVTRHRIQHIDISVFT 126

Query: 138 PSHINDYAFPLERYNFLKRGH-----------GLSGIKSLRSLCLNALKVSGE-VLEFFI 185
            S       PL  Y      H               +  L+ L L+ +  + E  L+  I
Sbjct: 127 CSGFG--VIPLSLYTCDTLVHLKLSRVTMVNVEFVSLPCLKILDLDFVNFTNETTLDKII 184

Query: 186 HSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSF----RYS 241
              P LE L +  SSE     +   S  LK ++IH  +      +  + L+ F     +S
Sbjct: 185 SCSPVLEELTIVKSSEDNVKIIQVRSQTLKRVEIHRRFDRHNGLVIDTPLLQFLSIKAHS 244

Query: 242 GKDIK-LHVGNVPQL-VDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLE--CCNEVF--M 295
            K I+ +++G   ++ +DV +        R           ++++L +      ++F  M
Sbjct: 245 IKSIEFINLGFTTKVDIDVNLLDPNDLSNRSMTRDFFTTISRVRSLVIRHGTIKDIFHYM 304

Query: 296 EFGHW-ELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQI 354
           E     +   L  L    +  N E LL L   LK+CP L+ L +K+ +  +   E+    
Sbjct: 305 ELEPLQQFCYLSELSAVCSISNLEMLLNL---LKSCPKLESLSLKLVDYEKNKKEEVMSS 361

Query: 355 ---PVHLHQHLKVVELHEFRWLQIDPE--IAFFIFRNAKVLEKMIIK 396
              P  L   LK V+L E + L    E  +A +   N+ +LEK+ +K
Sbjct: 362 TVPPPCLVSSLKFVKL-ESQLLGCGTELKVARYFLENSTILEKLTLK 407

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FF23|FB268_ARATH Putative F-box protein At5g38390 OS=Arabidopsis thaliana GN=At5g38390 PE=4 SV=1

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 108/235 (45%), Gaps = 24/235 (10%)

Query: 21  DWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNFTTALDFAGIGKDIIFPSKEEK 80
           D  S  P ++L +I+S LT KEAA TSVLS RW+ L  F   +D   +  DI       +
Sbjct: 2   DLLSNLPYELLCHILSFLTTKEAALTSVLSKRWRNLIAFVPNVDI--VDHDI-------R 52

Query: 81  SEYVCWVNKILSLHKGSNINKFRIRCTLDNSHGRDITNWIYTATAKKVQNFELDFWPPSH 140
             ++ +V+++L+L   S INKF + C+  +S   D   WI     + V    L  +  S 
Sbjct: 53  ELFMDFVDRVLALQGNSPINKFSLDCSGVDSDRVDC--WIQNVMVRGVSELNLSIFVDSV 110

Query: 141 I-NDY-AFP--LERYNFLKRG-------HGLSGIKSLRSLCLNALKVSGEVLEFFIHSCP 189
             +DY  FP   E    +K G        G   +  L++L L ++ +S E  E  +H+ P
Sbjct: 111 FEDDYNLFPKVFENKKLVKLGLSYISWLDGSIFLPMLKTLVLESVLLSVEKFEILLHALP 170

Query: 190 HLEHLYVANS--SELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRYSG 242
            LE L + N    E   + ++ SS  LK L I++      +      L    YSG
Sbjct: 171 ALEELVMNNIYWKERDVVDLIVSSESLKTLTINFIVCTHTLSFDTPILAYLSYSG 225

Arabidopsis thaliana (taxid: 3702)

>sp|Q93ZX6|FBL57_ARATH F-box/LRR-repeat protein At3g58900 OS=Arabidopsis thaliana GN=At3g58900 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 120/250 (48%), Gaps = 43/250 (17%)

Query: 21  DWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNFTTALDFAGIGKDIIFPSKEEK 80
           D FS  P+++L +I+S L+ KEAA TSVLS RW+ L+ F   L+F     D +F   EE+
Sbjct: 2   DLFSSLPNELLYHILSFLSTKEAALTSVLSKRWRNLFAFVPYLEF----DDSVFLHPEER 57

Query: 81  --------SEYVCWVNKILSLHKGSNINKFRIRCT--LDNSHGRDITNWIYTATAKKVQN 130
                     ++ +V+++L LH  S I  F ++C   +D+ H   +  WI    A+ V +
Sbjct: 58  KREKEGILQSFMDFVDRVLDLHGDSLIKTFSLKCKTGVDSDH---VDRWICNVLARGVSD 114

Query: 131 FEL--DFWPPSHINDYAFPLE----RYNFLKRGHGLSG---------IKSLRSLCLNALK 175
            +L  DF      + Y+ P E    R   + R    S          +  L++L L++  
Sbjct: 115 LDLFIDF-----RDLYSLPHEVGVSRTLVVLRVGSESDLYWWQKFLCLPMLKTLVLDSCW 169

Query: 176 VSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYL--DIHYCYS---MKEIEI 230
           +     +  + +CP LE L + N+    S   V SSI LK L  D+H C S   +K +  
Sbjct: 170 LCIGQFQILLLACPALEELDMTNTRWKDSNVTVSSSI-LKELTIDLHGCCSVVNLKSLSF 228

Query: 231 SASSLVSFRY 240
            A SLV F Y
Sbjct: 229 DAPSLVYFYY 238

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXR4|FBL56_ARATH Putative F-box/LRR-repeat protein At3g58880 OS=Arabidopsis thaliana GN=At3g58880 PE=4 SV=1

 Score = 76.3 bits (186), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 97/203 (47%), Gaps = 32/203 (15%)

Query: 19  MEDWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNFTTALDFAGIGKDIIFPSKE 78
           M D  S  PDD+L +I+S LT KEAA TS+LS RW+YL  F   L+F     D  F + E
Sbjct: 1   MVDLVSSLPDDLLGHILSLLTTKEAALTSILSKRWRYLIAFVPYLEF----DDSAFLNPE 56

Query: 79  E--------KSEYVCWVNKILSLHKGSNINKFRIRCTLDNSHGRD---ITNWIYTATAKK 127
           E        +  ++ +V+++L+LH  S I KF ++C      G D   +  WI     + 
Sbjct: 57  EGKQTREGTRQSFIDFVDRVLALHGDSPIRKFSLKC----KTGVDLDLLNQWICNVLQRG 112

Query: 128 VQNFELDFWPPSHINDYAFPLERYNF-LKRGHG---------LSGIKSLRSLCLNAL--K 175
           V   +L              + R    LK G G         +S +  L++L L+++   
Sbjct: 113 VLLIDLSMDLGHRCMFIEIFMSRTLVELKLGSGCRIAFGPEHISALPMLKTLTLDSVSWS 172

Query: 176 VSGEVLEFFIHSCPHLEHLYVAN 198
            SG+ LE  + +CP LE L +AN
Sbjct: 173 DSGQ-LERLLSACPALEALNLAN 194

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXR6|FB207_ARATH Putative F-box protein At3g58860 OS=Arabidopsis thaliana GN=At3g58860 PE=4 SV=1

 Score = 75.9 bits (185), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 105/219 (47%), Gaps = 28/219 (12%)

Query: 21  DWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNFTTALDFAGIGKDIIFP--SKE 78
           D FSK PD+++ +I+S L  KEAA TSVL+ +W+YL+ F  +LDF     D + P   K 
Sbjct: 7   DLFSKLPDEVISHILSSLPTKEAASTSVLAKKWRYLFAFVPSLDFN--DSDFLHPQEGKR 64

Query: 79  EKS----EYVCWVNKILSLHKGSNINKFRIRCTLDNSHGRDITNWIYTATAKKVQ----- 129
           EK      ++ +V+++L+L   S I KF +         R +  WI     + V      
Sbjct: 65  EKDGILRSFMDFVDRVLALQGASPIKKFSLNVKTGVDPDR-VDRWICNVLQRGVSHLALF 123

Query: 130 -NFELDFWPPSHINDYAFPLERYNFLKRGHGLS--------GIKSLRSLCLNALKVSGEV 180
            +FE ++  P  I+     +E    LK G+G+          +  L++L L +++     
Sbjct: 124 MDFEEEYSLPYEISVSKTLVE----LKTGYGVDLYLWDDDMFLPMLKTLVLESVEFGRGQ 179

Query: 181 LEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDI 219
            +  + +CP LE L + N  E     V+ SS  LK L I
Sbjct: 180 FQTLLPACPVLEELMLLN-MEWKDRNVILSSSSLKNLKI 217

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZ70|FDL1_ARATH F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 102/213 (47%), Gaps = 25/213 (11%)

Query: 21  DWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNFTTALDFAGIGKDIIFPSKEE- 79
           D+ S  P  I+ NI++RL++++A RTSVLSS+W+Y W+  T L F    +  + PS +  
Sbjct: 6   DFISDLPQSIIENILTRLSIRDAIRTSVLSSKWRYKWSTLTDLVF---DEKCVSPSNDRC 62

Query: 80  --KSEYVCWVNKILSLHKGSNINKFRIRCTLDNSHGRDITNWIYTATAKKVQNFELDFWP 137
             ++  V ++  +L LH+G  I+KF++  +       DI  W+   +   ++   L    
Sbjct: 63  VVETNLVRFITGVLLLHQGP-IHKFQLSTSFKQCRP-DIDQWLLFLSRNGIKELVLKLGE 120

Query: 138 PSHINDYAFPLERYNFLKRG------------HGLSGIKSLRSLCLNALKVSGEVLEFFI 185
                ++  P   +N LK                  G   L+SL L+ + V+ EV+E  I
Sbjct: 121 ----GEFRVPACLFNCLKLTCLELCHCEFDPPQYFKGFSYLKSLNLHQILVAPEVIESLI 176

Query: 186 HSCPHLEHLYVANSSELLSLKVVGSSIPLKYLD 218
             CP LE L ++    L+ L +   ++   YLD
Sbjct: 177 SGCPLLEFLSLSYFDSLV-LSISAPNLMYLYLD 208

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GW80|FBL65_ARATH F-box/LRR-repeat protein At3g59210 OS=Arabidopsis thaliana GN=At3g59210 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 110/249 (44%), Gaps = 38/249 (15%)

Query: 20  EDWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNFTTALDFAGIGKDIIFPS--- 76
           +D  +  PD++L  I+S L+ KEAA TS+LS RW+YL+     LDF       + PS   
Sbjct: 6   KDIINCLPDNLLCQILSNLSTKEAALTSLLSKRWRYLFALVPNLDFD------VLPSLHP 59

Query: 77  -----KEEKSEYVCWVNKILSLHKGSNINKFRIRCTLDNSHGRDITNWIYTATAKKVQNF 131
                 ++++ ++ +V+++L L    +INKF ++C  D     D+  WI       V + 
Sbjct: 60  EVAMQDQDQTSFIDFVDRVLKLRGKDHINKFSLKCG-DGIEDEDVFPWILNTLRHGVSDL 118

Query: 132 ELD------FWPPSHINDYAFPLERYNFLKRGHGLSGIKSLRSLCLNALKV--------- 176
            L       +W PS +    F  +    LK G        LR++CL  LK          
Sbjct: 119 SLHVSPSLVYWLPSKV----FASKTLVRLKIGPKDGPRVKLRNVCLPKLKTLNLDSVVFE 174

Query: 177 SGEV-LEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSM---KEIEISA 232
            G++     +  CP LE L + N +         SS  LK L ++  +S    K +    
Sbjct: 175 EGKIGFAKLLSGCPVLEELSLLNLAWDRWDSCSVSSKILKRLTLYCAHSSRNPKSVSFDT 234

Query: 233 SSLVSFRYS 241
            ++V F YS
Sbjct: 235 PNVVYFEYS 243

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FM94|FBD21_ARATH FBD-associated F-box protein At5g56370 OS=Arabidopsis thaliana GN=At5g56370 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 105/448 (23%), Positives = 184/448 (41%), Gaps = 70/448 (15%)

Query: 21  DWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNFTTALDFAGIGKDIIFPSKEEK 80
           D  S  PDD L+ I+S L  K+   TSVLS RW+YLW     L ++ I K+       + 
Sbjct: 2   DSISLLPDDFLLRILSLLPTKDVLNTSVLSKRWRYLWKLVPKLQYSLIDKN------ADH 55

Query: 81  SEYVCWVNKILSLHKGSNINKFRIRCTLDNSHGRDITNWIYTATAKKVQNFELDF----W 136
             +V +V++ L L     +    ++     S   DI  W+  A  K +   + D+     
Sbjct: 56  GTFVRFVDRSLLLSMAPVLESLHLKLGRQCSE-VDIGFWVRIAVEKGLCELDFDYEHYKT 114

Query: 137 PPSHINDYAFPLERYNFLK-RGHGLSGI------KSLRSLCLN-ALKVSGEVLEFFIHSC 188
            P  +    F       LK +   L  +      K L++L L   + +  E  +  + SC
Sbjct: 115 EPCRLPQSLFTCGTLTVLKLKNVSLKDVQFPVCFKLLKTLHLEYVIFLDKETPQKLLSSC 174

Query: 189 PHLEHLYVANSSELLSLKVVGSSIPLKYLD--IHYCYSMKEIEISASSLVSFRYSGKDIK 246
           P LE ++     +     V+  S+ +  L   I+   S  E+ ++  SL   + SG   +
Sbjct: 175 PILE-VFDLTRDDDDVDNVMSFSVMVPSLQRFIYCGGSGAELVMNTPSLKYLKLSGCGYE 233

Query: 247 LHVGNVPQLVDVVIHGA----PLFQVRYFIGLVVCCFP------------QLKTLDL-EC 289
             +GN+P++V+  +  A     +      +  ++ C P            QL+ L+   C
Sbjct: 234 CMIGNLPEIVEAHVEVACSTDDILTSLASVKRLLLCLPTEPELPTGTIFHQLEHLEFCSC 293

Query: 290 CNE-VFMEFGHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIG 348
           C E   + F     PKL  LKL  T        G + V ++ P         W       
Sbjct: 294 CTEWDILMFMLKHSPKLRSLKLNETH-------GYTIVSQSDPMFH------W------- 333

Query: 349 EKRHQIPVHLHQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEKMIIKPSSSRRKR---- 404
           E+   +P  L   L+ +E   +R L+++ E+A F+ ++++ L+     P+  ++ R    
Sbjct: 334 EEPSSVPETLMFVLETLEWRNYRGLKMENELASFLLKHSRRLKIATFSPADCKQVRIELR 393

Query: 405 ---ALKHCANMLKDKLPQG---VDLVVG 426
               +K+   M   +LP+G    +LV G
Sbjct: 394 TTVGMKYRILMELARLPRGSAECELVFG 421

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	428
255540581	457	ubiquitin-protein ligase, putative [Rici	0.978	0.916	0.344	2e-55
255544812	464	ubiquitin-protein ligase, putative [Rici	0.946	0.872	0.347	3e-52
449440973	475	PREDICTED: putative FBD-associated F-box	0.960	0.865	0.344	2e-45
302142991	402	unnamed protein product [Vitis vinifera]	0.742	0.791	0.365	7e-44
357477131	447	F-box family-6 [Medicago truncatula] gi|	0.925	0.885	0.316	3e-39
356544606	444	PREDICTED: putative F-box protein At3g58	0.922	0.889	0.308	1e-31
115470665	496	Os07g0158900 [Oryza sativa Japonica Grou	0.862	0.743	0.271	4e-29
23617087	515	hypothetical protein [Oryza sativa Japon	0.913	0.759	0.280	1e-28
357119372	497	PREDICTED: uncharacterized protein LOC10	0.850	0.732	0.266	8e-28
297736820	487	unnamed protein product [Vitis vinifera]	0.862	0.757	0.269	4e-27

>gi|255540581|ref|XP_002511355.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223550470|gb|EEF51957.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 159/462 (34%), Positives = 253/462 (54%), Gaps = 43/462 (9%)

Query: 1   MTKRARLTPADTPEKKENMEDWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNFT 60
           M KR + +   + E  E  ED  S  P++IL +I+S LT +EA+RTSVLS RW+ LW  T
Sbjct: 1   MAKRFQHSSVTSVE--EAKEDRISHLPEEILTSILSFLTTEEASRTSVLSRRWRILWTLT 58

Query: 61  TALDF----AGIGK--DIIFPSKEEKSEYVCWVNKILSLHKGSNINKFRIRCTLDNSHGR 114
           ++L+F      +GK  D  F  + E++ +  WV ++L ++K SN+++F +   L  +  R
Sbjct: 59  SSLNFDCTKIALGKKLDDRFALRSERTRFAMWVKRVLEVYKDSNLDEFIVSFDLTCNSRR 118

Query: 115 DITNWIYTATAKKVQNFELDFWPPS------HINDYAFPLERYNFLKRGHGLSGIKSLRS 168
            +  W+  A +K ++  E+   P S      H   Y+FP++ Y+F++   GLS I SLRS
Sbjct: 119 SLDKWMNFAMSKTLKRLEISLAPFSSRKFRFHDECYSFPVDCYSFIRGPEGLSNISSLRS 178

Query: 169 LCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEI 228
           LCL  + ++GEV+E F+ +CP LE L VA +  L SLKV  SS+ LKYL+I  CY +K  
Sbjct: 179 LCLRYVNMTGEVVEHFLLNCPLLEQLTVAVAYRLESLKVPASSLRLKYLEIFDCYHLKNF 238

Query: 229 EISASSLVSF------RYSGKDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQL 282
           EI A +LV+       RY+G+ +KL   ++P L+D+ + G  L     F G     F QL
Sbjct: 239 EICAPNLVTILYNQGGRYNGRRMKLQAVHLPHLLDLHLGGPELSITEDFFGACSSSFSQL 298

Query: 283 KTLDL--------ECCNEVFMEFGHW-ELPKLLHLKLTITEPNCESLLGLSFVLKACPFL 333
            TL +        EC  +V ++F  + EL  L HL    TE +  S+L +  ++K+ P L
Sbjct: 299 MTLKIVVTEVRMQEC--QVRLKFPKFPELTNLRHLGFK-TEYDICSILAVRLLIKSSPLL 355

Query: 334 QKLVIKIWNNNRTIGEKRHQIPVHL-HQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEK 392
            K  +++ + +R   ++R +  ++  HQ+LKVVE+  F    ++ E   F   NA  LEK
Sbjct: 356 NKFTLELADGSRCQIKRRVRTGINCPHQNLKVVEIVGFIGGAVEYEFIMFFLDNASALEK 415

Query: 393 MIIKP---------SSSRRKRALKHCANMLKDKLPQGVDLVV 425
           +I++P          +   +RA +H A   K +    V++V+
Sbjct: 416 IILRPRDPFSPSEAENKMLRRAREH-AEKFKTRFSPRVEVVI 456

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544812|ref|XP_002513467.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223547375|gb|EEF48870.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  212 bits (539), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 160/460 (34%), Positives = 236/460 (51%), Gaps = 55/460 (11%)

Query: 7   LTPADTPEKKE-NMEDWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNFTTA-LD 64
           L P+D    +  N+ +  S+ P+D+L+NI+SRLT+KEAARTS+LS+RW++LW + T  +D
Sbjct: 18  LLPSDENRARNGNISEHISQLPEDVLLNILSRLTMKEAARTSILSTRWRHLWTYYTGIMD 77

Query: 65  F----------AGIGKDIIFPSKEEKSEYVCWVNKILSLHKGSNINKFRIRCTLDNSHGR 114
           F           G+G   +     E+  +V WVN++L  H+G  +   RI   LD+    
Sbjct: 78  FDASLTMWYLQLGLGSKSL---DMERHSFVSWVNQVLRSHEGPTMEGLRICFDLDSDFMY 134

Query: 115 DITNWIYTATAKKVQNFELDFW--PPS--HINDYAFPLERYNFLKRGHGLSGIKSLRSLC 170
           +I +WI  A  K+V+  E+D     PS      YAFP    N        S   SL++L 
Sbjct: 135 EIDSWITIAMQKRVKRLEIDLTNIEPSIKTTGSYAFPSGLLND-------SSFSSLKTLQ 187

Query: 171 LNALKVSGEVLEFFIHS-CPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIE 229
           LN + V+GE L+  + S CP LE L + NS+ L+SLKV GSS+ LKYL++  C ++K +E
Sbjct: 188 LNMVDVTGEALQHLLLSWCPLLEVLSIVNSTSLVSLKVSGSSLKLKYLEMVCCNNLKYLE 247

Query: 230 ISASSLVSFRYSGKDIKLHVGNVPQLVDVVIHGAPLFQVR----YFIGLVVCCFPQLKTL 285
           I+A+SLVSF+Y G  I L   +VP LVD    G P  Q+     Y   L +    QL+TL
Sbjct: 248 ITAASLVSFKYYGPLIGLPFKSVPNLVDASF-GGPFCQLTIENLYQFSLYIL---QLETL 303

Query: 286 DLECCNEVFMEFGHWELPKLLHLK----LTITEPNCESLLGLSFVLKACPFLQKLVIKIW 341
             +  +   M       P L ++K     T        L     +LK CP L +  +K+ 
Sbjct: 304 RFDVGSAYLMREFPTNFPILSNVKHLEVTTAVSAVAHCLFPCLSLLKGCPLLHRFTLKVI 363

Query: 342 NNNRT-IGEKRHQIPV-HLHQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEKMIIKP-- 397
           +   T +     ++P  H H  LKVVE+  F+    + E+  +  RNA VL+ +II P  
Sbjct: 364 SCESTLVCRASQKVPEDHSHPCLKVVEVLGFQGNAAEVELVLYFLRNAAVLKNLIISPCA 423

Query: 398 -----SSSRRK-------RALKHCANMLKDKLPQGVDLVV 425
                S S+ K       ++ K  A  L  ++P GVD VV
Sbjct: 424 PCYLRSPSQLKFKETELYQSAKQHAVELGARVPPGVDFVV 463

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440973|ref|XP_004138258.1| PREDICTED: putative FBD-associated F-box protein At5g56700-like [Cucumis sativus] gi|449501454|ref|XP_004161371.1| PREDICTED: putative FBD-associated F-box protein At5g56700-like [Cucumis sativus]

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 155/450 (34%), Positives = 234/450 (52%), Gaps = 39/450 (8%)

Query: 9   PADTPEKK--ENMEDWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNFTTALDFA 66
           P + PE +  +   D  S  P DILV I+S L LKEAARTS LS +W+ LW+F   L+F 
Sbjct: 31  PFEEPENERCDRSVDSISHLPQDILVFILSLLPLKEAARTSTLSHKWRCLWSFIPCLNFD 90

Query: 67  GIGK--DIIFPS---KEEKSEYVCWVNKILSLHKGSNINKFRIRCTLDNSHGRDITNWIY 121
              K  D+ F     K E+ ++V WVN+++  +KGSN+   RIR  LD+S   D+  W+ 
Sbjct: 91  AHKKLLDLQFTDENLKSERRQFVKWVNRVIDSYKGSNLETLRIRFNLDSSFQCDVDRWVQ 150

Query: 122 TATAKKVQNFEL---DFWPPSHINDYAFPL----ERYNFLKRGHGLSGIKSLRSLCLNAL 174
            A   K++ FEL   D +     +  +FP      + NF +     S   SL++L L A+
Sbjct: 151 FAMQWKLKMFELNLSDSYDSGIYSPCSFPQLSDGPKENFPR--FMFSNSSSLKTLKLIAV 208

Query: 175 KVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASS 234
            V GE LE F+ + P LE L V  S  LLSL+VVG+S+ L+ L++  C  ++ +E+SA +
Sbjct: 209 NVGGEALECFLTNSPLLEILVVEYSHCLLSLRVVGASLKLRQLEVCMCNYLESLEVSAPN 268

Query: 235 LVSFRYSGKDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEV- 293
           L SF+Y G  + + + N P+L++         ++     L+     QL+ L L+   EV 
Sbjct: 269 LESFKYVGPWLSMPLKNTPKLLETYFGSEFGVEIIDHFFLLSSYSSQLQKLILDL--EVD 326

Query: 294 FME---FGHWE-LPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGE 349
           FME   F  W  L  L  LKL +      SL+G + ++KA P L K  +K+  +   + E
Sbjct: 327 FMENQGFRKWPILANLKELKLIVIAEGHSSLIGFTSLIKASPSLLKFTLKL--DYLDMFE 384

Query: 350 KR--HQIPVHLHQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEKMII---KP------- 397
           +R   ++    HQ++KVVEL  F    ID E+  +  +NA  LE++I    KP       
Sbjct: 385 QRPLRKVKKFPHQYIKVVELAGFVGKPIDLELVQYFHKNAVALEEIIFDTRKPKDMGTIF 444

Query: 398 --SSSRRKRALKHCANMLKDKLPQGVDLVV 425
               +    A + CAN L+ KL  GV + +
Sbjct: 445 EKKQNAETIAGRECANGLRSKLFSGVKVTI 474

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142991|emb|CBI20286.3| unnamed protein product [Vitis vinifera]

 Score =  184 bits (467), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 133/364 (36%), Positives = 198/364 (54%), Gaps = 46/364 (12%)

Query: 20  EDWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNFTTALDFAGIGKDIIFPSKE- 78
           ED  S+ PD+IL++I+SRLTL+EAA TSVLS RW+YLW +T+ L+F  +   I+  S   
Sbjct: 21  EDLLSELPDEILISILSRLTLREAAATSVLSQRWRYLWTYTSRLNFDSVVNKIVRRSHSF 80

Query: 79  ----------EKSEYVCWVNKILSLHKGS-NINKFRIRCTLDNSHGRDITNWIYTATAKK 127
                      + +Y+ WV+K+L+ ++G  N+++FR+   L      DI  W   A +K 
Sbjct: 81  ALSTAAGRRRRRRKYIKWVHKVLAKYRGGRNLDEFRVCFDLSKRSRSDIDKWFEFAMSKN 140

Query: 128 VQNFELDFWPPSHIN---DYAFPLERY--NFLKRGHGLSGI-------------KSLRSL 169
           V+N E DF   S  N   D  F +  Y  NF K  H + G+             KSL++L
Sbjct: 141 VKNLEFDFLRCSSQNQDRDPWFVMLSYFQNFYKFPHRILGVREARDPNGMFVGFKSLKTL 200

Query: 170 CLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIE 229
            L ++ VS E +E+F+ +CP LE L V  S  L++L+V G SI L++L+I  C S++ IE
Sbjct: 201 SLKSINVSSEAVEYFLSNCPLLERLSVHGSESLVNLRVAGPSIMLRHLEIVKCSSIQTIE 260

Query: 230 ISASSLVSFRYSGK---DI---KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLK 283
           I  ++LVSF Y G+   D+    +H+ N P LV+V+     L   +  +  +  C  QL+
Sbjct: 261 ICDTNLVSFTYRGERKGDLLPNNMHIENSPLLVEVLAGVGRLGFAKNMLLKLSSCVHQLQ 320

Query: 284 TLDLECCNEVFMEFGH-WELPKLL---HLKLTI---TEPNCESLLGLSFVLKACPFLQKL 336
            L L   +  F E    + LPKL     LKLT+      NC  LLG   +LK CP L+ L
Sbjct: 321 ILQLT-VDHFFPERSRAYLLPKLRNLKQLKLTVFVGCPENC--LLGFVAMLKKCPHLESL 377

Query: 337 VIKI 340
           V+++
Sbjct: 378 VLQV 381

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477131|ref|XP_003608851.1| F-box family-6 [Medicago truncatula] gi|355509906|gb|AES91048.1| F-box family-6 [Medicago truncatula]

 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 148/467 (31%), Positives = 226/467 (48%), Gaps = 71/467 (15%)

Query: 2   TKRARLTPADTPEKKENMEDWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWN-FT 60
           +K  +   A +  +K+  ED  ++ PD I +NI++ L +KEAARTS+LS +WK LW  F+
Sbjct: 6   SKDGKQKRAKSNNEKDYEEDIINQLPDGIPINILANLPIKEAARTSILSRKWKNLWTYFS 65

Query: 61  TALDFAG--IGKDIIFPSKE----------------EKSEYVCWVNKILSLHKGSNINKF 102
             L+F G  I KD+I   K+                E+  Y  W+N++LS  + S +   
Sbjct: 66  GTLEFEGSPIMKDMIKDLKKVTGGRLQMAMEIMYDAERQTYTSWINELLSSLQCSTLQGL 125

Query: 103 RIRCTLDNSHGRDITNWIYTATAKKVQNFELDFWPPSHINDYAFPL-----ERYNFLKRG 157
           +    + N    DI NWI+ A  KKVQ  EL F    H   Y  PL     ER+N     
Sbjct: 126 KFWFPMKNVS--DIDNWIHFAVQKKVQKLELYF---GHTIVYVLPLHIFKVERFN----- 175

Query: 158 HGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYL 217
                  SL  L + ++ V+ E+LE+ + +C  LE L + +S    ++KV GSS+ LK L
Sbjct: 176 -------SLCVLRMKSITVTDEMLEYLMCNCQLLETLSLVDSRVPKTMKVSGSSLKLKCL 228

Query: 218 DIHYCYSMKEIEISASSLVSFRYSGKDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVC 277
           ++  C+ + +IEI A  LVSF+Y G  ++    +VP L +    G+       F+  V  
Sbjct: 229 ELVRCWELTKIEIFAEKLVSFKYYGSHLETEFKSVPCLEEASFGGS-------FVEFVRE 281

Query: 278 CF-PQLKTLDLECCNEVFMEFGHW--ELPKLLHLK-LTITEPNCESLLGLSFVLKACPFL 333
            F PQ+K L L+       E  +W  +LPKL +LK L +     + +     +LKA P L
Sbjct: 282 SFLPQIKVLKLDITQNS-PEVIYWLSQLPKLKNLKHLELVACADDGISACVMLLKASPSL 340

Query: 334 QKLVIKIWNNNRT-IGEKRHQIPVHLHQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEK 392
            +L IK+ N   T I E  H+  +  H +LK +EL  F     + E+  +I  N   L+K
Sbjct: 341 WRLKIKMLNTKPTYITE--HKFTMECHYNLKELELVGFCGAACEVELVMYILENTDELQK 398

Query: 393 MIIK---PSSSRRK------------RALKHCANMLKDKLPQGVDLV 424
           + I    P+  + +               K CA  LKDK+P  ++ V
Sbjct: 399 ITIDTRLPTKPKLRPLDEEHFETWDLEEKKRCAWRLKDKIPPCIEFV 445

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544606|ref|XP_003540740.1| PREDICTED: putative F-box protein At3g58860-like [Glycine max]

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 139/451 (30%), Positives = 218/451 (48%), Gaps = 56/451 (12%)

Query: 17  ENMEDWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNFTTA-LDF---------- 65
           EN  D  S  PDDIL +I+SRLTLKEAARTSVL+++W+Y W F +  LDF          
Sbjct: 7   ENNRDIISTMPDDILGDILSRLTLKEAARTSVLATKWRYHWTFFSGLLDFDHSLRNFHLR 66

Query: 66  ---AGI-GKDIIFPSKEEKSEYVCWVNKILSLHKGSNINKFRIRCTLDNSHGRDITNWIY 121
               GI  K  +F  + E+  ++  +  ++   K S++   RI   +D      +  W+ 
Sbjct: 67  REHVGILTKCNVFVYEWER--FMTRMANVMKSLKSSSLQGLRI--CMDLGDPWRVAEWVK 122

Query: 122 TATAKKVQNFELDFWPPSHINDYAFPLERYN--FLKRGHGLSGIKSLRSLCLNALKVSGE 179
            A  K VQ  +LDF     +  Y   L   +  F  RG+ +   KSL +L L+++ VSGE
Sbjct: 123 YAAEKHVQTLDLDFSYHFSVPFYEISLTIVHNVFPSRGYEM---KSLCNLRLSSVDVSGE 179

Query: 180 VLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFR 239
           V+E  + SCP LE + V  S  L+ LKV G ++ LK+L++  C  M +++I A +LV+FR
Sbjct: 180 VIEGLLASCPLLESICVIESKRLVRLKVRGEALRLKHLELVECRIM-DLDIYAVNLVTFR 238

Query: 240 YSGKDIKLHVGNVPQLVDVVIHG-------APLFQVRYFIGLVVCCFPQLKTLDLECCNE 292
           Y GK  K    NVP LV+    G       + + +V ++  L+     Q+  L LE    
Sbjct: 239 YQGKYGKFKFQNVPSLVEASFGGIFCSYLESDMDRVDFYGVLL-----QINVLKLELSKP 293

Query: 293 V--FMEFGHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEK 350
              F+E G      +  L++ I   +  +L     +L + P ++ L IK   N+ ++ E+
Sbjct: 294 YPGFLE-GLPVFDNVGQLEIRIPHRSGAALDHHVSLLSSFPSVRVLKIKFQRNDLSVVEE 352

Query: 351 RHQIPV-HLHQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEKMIIKPSSS--------- 400
             +  + H + +L+ +E+  FR      E+   IF  A  L  +++ P SS         
Sbjct: 353 NWKANLEHEYPNLRELEVSGFRRDPSQMELLISIFEKAPNLNSVVVDPLSSIHVDRSPDV 412

Query: 401 ------RRKRALKHCANMLKDKLPQGVDLVV 425
                  R+   K  A+ LK  LP    L+V
Sbjct: 413 KARYREMRRETTKWLADALKPHLPPLTQLIV 443

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115470665|ref|NP_001058931.1| Os07g0158900 [Oryza sativa Japonica Group] gi|34394889|dbj|BAC84338.1| unknown protein [Oryza sativa Japonica Group] gi|113610467|dbj|BAF20845.1| Os07g0158900 [Oryza sativa Japonica Group] gi|125557298|gb|EAZ02834.1| hypothetical protein OsI_24963 [Oryza sativa Indica Group] gi|215694312|dbj|BAG89305.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 112/413 (27%), Positives = 185/413 (44%), Gaps = 44/413 (10%)

Query: 23  FSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNFTTALDFAGIGKDIIFPSKEEKSE 82
           F+  P DIL+ IISRL +KEAARTS+LSS WK +W     L+F+         S    + 
Sbjct: 16  FNDLPTDILIGIISRLPIKEAARTSILSSHWKKIWCSHVNLEFSFYSMSPRLASTSHDAR 75

Query: 83  -----YVCWVNKILSLHKGSNINKFRIRCTLDNSHGRDITNWIYTATAKKVQNFELDF-- 135
                ++  V+++ + H G ++ K  I+  LDN H   I  W+   +A K ++   DF  
Sbjct: 76  LRMKMFIERVSQVFAQHSGLSVQKIAIQGKLDNEHADHINRWLSFVSATKTKDLTFDFKS 135

Query: 136 -WPPSHINDYAFPLERYNFLKRGHGLS---------------GIKSLRSLCLNALKVSGE 179
            +P      Y FP + +  +   + LS                  +L+ L L    ++ E
Sbjct: 136 RYPRE--GPYDFPFKFFGAMDSSYLLSMRLSAVSLNPPVDFKAFLNLKRLKLEHTNITDE 193

Query: 180 VLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFR 239
            ++  I +C  LE L + +  +L  L        LK+L +  C+ +KEIE++   L    
Sbjct: 194 NMQILISNCNALEFLGIVDCGKLTRLSTSHLWNQLKHLHVESCHLLKEIELNL-GLTKLG 252

Query: 240 YSGKDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFP----QLKTLDLECC--NEV 293
           Y G  I L       L +V +    L   R  +G +    P     L+TL L+C      
Sbjct: 253 YKGTLIPLSPPGPLLLTNVCM---KLQHARSSLGYIFTNLPSTLLHLETLSLQCSELERA 309

Query: 294 FMEFGHWELPKLLHLKLTITEPNCE---SLLGLSFVLKACPFLQKLVIKIWN--NNRTIG 348
            +   H +   L HL+L +  P  E    LL  + +L+A P LQK  + +W   +++   
Sbjct: 310 ILPENHIKFMYLKHLRLQLRHPVTEKKIDLLDFACLLEAAPLLQKFELHMWMPLHHQRYR 369

Query: 349 EKRH----QIPVHLHQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEKMIIKP 397
           E+ H     +P   H HL++V +  F  ++   E++  I RN+ ++  M + P
Sbjct: 370 EEAHGELRSLPPQPHAHLRLVHISGFIGMKDQLELSLHILRNSAMIRAMKVDP 422

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|23617087|dbj|BAC20770.1| hypothetical protein [Oryza sativa Japonica Group] gi|125599211|gb|EAZ38787.1| hypothetical protein OsJ_23190 [Oryza sativa Japonica Group]

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 125/445 (28%), Positives = 196/445 (44%), Gaps = 54/445 (12%)

Query: 1   MTKRARL-TPADTPEKKENMEDW---FSKFPDDILVNIISRLTLKEAARTSVLSSRWKYL 56
           M KR R+ +  D   +    + W    S  P+DIL  I+S+L L+EAARTS+LSS+W   
Sbjct: 1   MEKRKRIASKEDLHGQMMKRKKWRLQLSNLPEDILCTIVSKLPLREAARTSILSSQWNRT 60

Query: 57  WNFTTALDFA--------GIGKDIIFPSKE-EKSEYVCWVNKILSLHKGSNINKFRIRCT 107
           W   T L+ +         I +DI    ++    E++  V+ IL  H G  + K  +   
Sbjct: 61  WCSHTNLNLSYRSIMSRRYIERDIRPEGRKLNAEEFIRRVDAILQQHNGGGVEKIEVIGL 120

Query: 108 LDNSHGRDITNWIYTATAKKVQNFELDF----WPPSHINDYAFP------LERYNFLKRG 157
           L+N +   I  W+  A   K +   LDF    WP     ++AF       +E    LK G
Sbjct: 121 LENENAYHINGWVNFAIKSKTKQLVLDFRSFHWPIDEPYNFAFQIFDAANMENLQSLKLG 180

Query: 158 H-------GLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGS 210
                      G ++L+ L L  + ++ E L+  + +C  LE L +     + SL+    
Sbjct: 181 SISLKPPADFKGFQNLKRLKLLDVGITDEDLQLLLSNCNCLEFLGIYCCKLITSLRTTHL 240

Query: 211 SIPLKYLDIHYCYSMKEIEISASSLVSFRYSGKDIKLHVGNVPQLVDVVIHGAPLFQ-VR 269
           S  LK+L ++ C  +KEIE++ S L +  Y G  I L    +  L ++ I    +   ++
Sbjct: 241 STQLKHLYVYECPCLKEIELN-SGLTTLEYIGPLIPLAPPGIYVLTNLRIKSLDISDSLQ 299

Query: 270 YFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELP---------KLLHLKLTITEPN--CE 318
           Y    +    P+L+ L L+C      E     LP         K L L+L  + P     
Sbjct: 300 YIFTELPSTLPRLEMLTLQC-----RELERITLPDKPIKFIYLKHLRLELAFSGPRKWDA 354

Query: 319 SLLGLSFVLKACPFLQKLVIKIWNN------NRTIGEKRHQIPVHLHQHLKVVELHEFRW 372
            +L  + +L+A P ++KL   +W N       R    K   +P   H HLK V +  F  
Sbjct: 355 DILDFACILEAAPLMEKLEFHMWMNCRDHLRYRKAHGKLRTLPPCPHYHLKEVNIAGFYG 414

Query: 373 LQIDPEIAFFIFRNAKVLEKMIIKP 397
            +   E+A  I RN+ VL+ M I P
Sbjct: 415 QKDQLELAHHILRNSVVLQAMNIDP 439

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357119372|ref|XP_003561416.1| PREDICTED: uncharacterized protein LOC100838353 [Brachypodium distachyon]

 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 114/428 (26%), Positives = 188/428 (43%), Gaps = 64/428 (14%)

Query: 23  FSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNFTTALDF--AGIGKDIIFPSKEE- 79
            S  P D+L +++S+L ++EA +TS+LS +WKY+W   T+L+F    I   + + ++E  
Sbjct: 26  LSDLPMDVLCSVLSQLPMEEAVKTSILSCQWKYIWCHQTSLNFNCKTIMPRVAWSTREAV 85

Query: 80  KSEYVCWVNKILSLHKGSNINKFRIRCTLDNSHGRDITNWIYTATAKKVQNFELDFW--- 136
           + E++  VN +L    G+ + K  IR  LD+ H  D+  W+  A A K +   L+ W   
Sbjct: 86  RQEFIKRVNAVLRQRNGAGVEKMNIRFDLDDRHAADVDRWVNLAIASKTKVLTLELWLDS 145

Query: 137 ----------PPSHINDYAFPLERYNFLKRGH---------------GLSGIKSLRSLCL 171
                      P  +  Y FP + ++     H                  G  +L+ L L
Sbjct: 146 PAIVYRLRVSDPERMEPYNFPFQLFDECNGSHLRSLHLSTVSLKLPTNFKGFLNLKKLYL 205

Query: 172 NALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEIS 231
           + + ++ E L  F+  C  LE L V   + L +L +  S+  LK+L I  C  + ++ ++
Sbjct: 206 SGVSITDEDLGHFVSKCSVLEFLGVLFCTMLETLTIPHSANQLKHLQIRCCPLLHKVRLN 265

Query: 232 ASSLVSFRYSGKDIKLHVGNVPQLVDVVIHGAPLFQVRYFI--------GLVVCCFPQ-- 281
             SL    Y G            L D  I+   L  VR  +        G   C  P+  
Sbjct: 266 Y-SLKMLVYKGPVTYFVSDRTSSLTDACIN---LLDVRTSLKHLFAELSGSTSC--PKSV 319

Query: 282 -LKTLDLE-----CCNEVFMEFGHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQK 335
             K  DLE       +  F+   H +    L + + ++  +   +L L  +LKA P ++K
Sbjct: 320 ATKCRDLERSIPPRSSTCFLGLRHVK----LEVTILVSSESGTDVLDLGHLLKAAPSMEK 375

Query: 336 LVIKIWNNN------RTIGEKRHQIPVHLHQHLKVVELHEFRWLQIDPEIAFFIFRNAKV 389
           L + +W         R  G+ R  +P H H HLK+V +  F   +   E+A  I RN  V
Sbjct: 376 LELHMWMRRKHKPYCRDDGDLR-ILPAHPHSHLKLVHITGFYGHKDQLELADHILRNCVV 434

Query: 390 LEKMIIKP 397
           LE+M + P
Sbjct: 435 LEEMKVDP 442

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736820|emb|CBI26021.3| unnamed protein product [Vitis vinifera]

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 119/441 (26%), Positives = 201/441 (45%), Gaps = 72/441 (16%)

Query: 20  EDWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNFTTAL--DFAGI--------- 68
           EDW  + PDDIL  IIS L LKEA RT +LS RW+ +W   + L  D A +         
Sbjct: 15  EDWLVELPDDILSTIISLLPLKEAVRTGILSKRWRSIWTCHSELWFDAASVLGIGDCSTS 74

Query: 69  --GKDIIFPSKEEKSEYVCWVNKILSLH-KGSNINKFRIRCTLDNSHGRDITNWIYTATA 125
             G      S+ + S++V  V++ +    +G  IN F I   L       I  WI  A  
Sbjct: 75  MSGNQPELNSQMQSSKFVERVDQFMYYRSQGRKINSFSIHFPLGKEFMSHIDQWITCAVM 134

Query: 126 KKVQNFELDFWPPSHINDY-AFPLER----------YNFLKRGHGLSG------------ 162
           K V+N +LD      +++Y +F L+R          Y F  R   + G            
Sbjct: 135 KGVENIDLD------LSEYFSFNLKRDDTSSTAFQIYEFPCRLFSVPGGRCTLKHLRLAS 188

Query: 163 -----------IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSS 211
                      + SL ++ L  + +S + L+  + +C HLE L +   + L++L     +
Sbjct: 189 CHLSALPSSNTLTSLITVDLQRVNISDQQLQDLLSTCSHLEWLSLCVCNGLVNLSFSALN 248

Query: 212 IPLKYLDIHYCYSMKEIEISASSLVSFRYSGKDIKLHVGNVPQL----VDVVIHGAPLFQ 267
           + LK+L I  C+ ++ IEI A+ LV+F+Y G        NVP+L    ++  I  +    
Sbjct: 249 LQLKFLSIKNCFRLETIEIHAADLVTFKYGGHLPSFSFKNVPKLAKASLEFFIKSSRTEG 308

Query: 268 VRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPK-------LLHLKLTITE-PNCES 319
           V Y +       PQL+TL L       +     +LP+       +   +LT+    + + 
Sbjct: 309 VMYALTRFPQDLPQLETLKLLSV----LTLKKLQLPENGPTFTNVKQFELTVFPFDDDDD 364

Query: 320 LLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQ--IPVHLHQHLKVVELHEFRWLQIDP 377
           L  + ++LKA P LQKL + +++ + T   K  +  +P   H+HL +++++ F   Q + 
Sbjct: 365 LSWIGYILKAFPLLQKLELNLFSPSFTKQPKEIERFLPECPHRHLSILQINGFYGNQHEV 424

Query: 378 EIAFFIFRNAKVLEKMIIKPS 398
           ++  ++  N   LE +++ PS
Sbjct: 425 DLLKYLLHNLVALELLVVAPS 445

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	428
TAIR|locus:2157922	444	AT5G53840 "AT5G53840" [Arabido	0.845	0.815	0.270	2.4e-16
TAIR|locus:2122754	409	AT4G10400 "AT4G10400" [Arabido	0.824	0.863	0.273	1.5e-15
TAIR|locus:2201522	456	AT1G66300 "AT1G66300" [Arabido	0.464	0.436	0.256	2.2e-14
TAIR|locus:2201527	442	AT1G66310 "AT1G66310" [Arabido	0.404	0.391	0.259	1.1e-13
TAIR|locus:2162454	437	AT5G22700 "AT5G22700" [Arabido	0.429	0.421	0.278	2.7e-13
TAIR|locus:2008276	435	AT1G51370 "AT1G51370" [Arabido	0.852	0.839	0.241	3.6e-13
TAIR|locus:2201512	453	AT1G66290 "AT1G66290" [Arabido	0.467	0.441	0.242	8.8e-13
TAIR|locus:2177396	456	AT5G38390 "AT5G38390" [Arabido	0.492	0.462	0.306	1.1e-12
TAIR|locus:2010032	416	AT1G13570 "AT1G13570" [Arabido	0.869	0.894	0.236	1.2e-12
TAIR|locus:2081172	484	AT3G59210 "AT3G59210" [Arabido	0.502	0.444	0.289	1.3e-12

TAIR|locus:2157922 AT5G53840 "AT5G53840" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 2.4e-16, P = 2.4e-16
 Identities = 110/406 (27%), Positives = 183/406 (45%)

Query:    20 EDWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNFTTALDFAGIGKDIIFPSKEE 79
             E+  S+ PD ++  I+S L+ K+A RTS+LS+RW+ LW     LDF    +++       
Sbjct:    17 EERLSQLPDHLICVILSHLSTKDAVRTSILSTRWRNLWQLVPVLDFDS--REL-----RS 69

Query:    80 KSEYVCWVNKILSLHKGSNINKFRIRCTLDNSHGRDITNWIYTATAKKVQNFELDFWPPS 139
              SE+V +      LHK S I K R+ C  D +    +T+WI   T  ++Q+ ++  +  S
Sbjct:    70 FSEFVSFAGSFFYLHKDSYIQKLRV-CIYDLAGNYYLTSWIDLVTRHRIQHIDISVFTCS 128

Query:   140 HINDYAFPLERYNFLKRGH-GLSGIKSLR----SL-CLNALKV-----SGEVLEFFIHSC 188
                    PL  Y      H  LS +  +     SL CL  L +     + E     I SC
Sbjct:   129 GFG--VIPLSLYTCDTLVHLKLSRVTMVNVEFVSLPCLKILDLDFVNFTNETTLDKIISC 186

Query:   189 -PHLEHLYVANSSELLSLKVVG-SSIPLKYLDIHYCYSMKEIEISASSLVSF----RYSG 242
              P LE L +  SSE  ++K++   S  LK ++IH  +      +  + L+ F     +S 
Sbjct:   187 SPVLEELTIVKSSED-NVKIIQVRSQTLKRVEIHRRFDRHNGLVIDTPLLQFLSIKAHSI 245

Query:   243 KDIK-LHVGNVPQL-VDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLE--CCNEVF--ME 296
             K I+ +++G   ++ +DV +        R           ++++L +      ++F  ME
Sbjct:   246 KSIEFINLGFTTKVDIDVNLLDPNDLSNRSMTRDFFTTISRVRSLVIRHGTIKDIFHYME 305

Query:   297 FGHWE-LPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKI--WNNNRTIGEKRHQ 353
                 +    L  L    +  N E LL L   LK+CP L+ L +K+  +  N+        
Sbjct:   306 LEPLQQFCYLSELSAVCSISNLEMLLNL---LKSCPKLESLSLKLVDYEKNKKEEVMSST 362

Query:   354 IPVH-LHQHLKVVELHEFRWLQIDPE--IAFFIFRNAKVLEKMIIK 396
             +P   L   LK V+L E + L    E  +A +   N+ +LEK+ +K
Sbjct:   363 VPPPCLVSSLKFVKL-ESQLLGCGTELKVARYFLENSTILEKLTLK 407

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:2122754 AT4G10400 "AT4G10400" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 1.5e-15, P = 1.5e-15
 Identities = 112/410 (27%), Positives = 188/410 (45%)

Query:    21 DWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNFTTALDFAGIGKDIIFPSKEEK 80
             D  S  PD++LV I+S +  K A  TS+LS RW++LW + T L F    K     S+ E 
Sbjct:     2 DRISGLPDEVLVKILSFVPTKVAVSTSILSKRWEFLWMWLTKLKFGS--KRY---SESEF 56

Query:    81 SEYVCWVNKILSLHKGSNINKFRIRCTLDNSHGR--DITNWIYTATAKKVQNFELDFWPP 138
                 C++++ L LH+   I  FR+   L +SH +  DI  W+  A ++ ++  EL  +  
Sbjct:    57 KRLQCFLDRNLPLHRAPVIESFRL--VLSDSHFKPEDIRMWVVVAVSRYIR--ELKIYS- 111

Query:   139 SHINDYA--FPLERYN-----FLKRGHGLSGIKSLRSLCLNALK---VSGE------VLE 182
             SH  +     P   Y       LK   G+  +   R +CL +LK   + G        L+
Sbjct:   112 SHYGEKQNILPSSLYTCKSLVILKLDGGVL-LDVPRMVCLPSLKTLELKGVRYFKQGSLQ 170

Query:   183 FFIHSCPHLEHLYVANSSELLSLKVVGSSIP-LKYLDIHYCYSMKEIEISASSLVSFRYS 241
               + +CP LE L V N S   ++  +   +P L+ L +    S +E  I   SL+SF+  
Sbjct:   171 RLLCNCPVLEDL-VVNLSHHDNMGKLTVIVPSLQRLSLS-TPSSREFVIDTPSLLSFQLV 228

Query:   242 GKDIKLH---VGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG 298
              ++   H   + N+P+L +  I+  P   ++  IG +      +K L +        E G
Sbjct:   229 DRNDNSHTFLIENMPKLREAYIN-VPFADIKSLIGSIT----SVKRLAISS------EVG 277

Query:   299 HWELPKLLHLK-LTITEPNCESLLGLSFVLKACPFLQKLV-IKIWNNNRTIGEKRHQIPV 356
             + E     HL+ LT+      +LL   + LK  P L++L+ +   +++  +G      P 
Sbjct:   278 YGEGFIFNHLEELTLWNKYSSNLL--VWFLKNSPNLRELMLVSETDDHENLGMLSWNQPS 335

Query:   357 HLHQHLKVVELHEFRWLQI-----DPEIAFFIFRNAKVLEKMIIKPSSSR 401
              + + + +  L +F W +      D +IA +I +NA  L    IK S +R
Sbjct:   336 IVPECM-LSSLQKFTWFKYLGRPQDRDIAVYILKNACRLRTATIK-SDTR 383

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2201522 AT1G66300 "AT1G66300" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
 Identities = 57/222 (25%), Positives = 105/222 (47%)

Query:     6 RLTPADTPEKKENME-DWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNFTTALD 64
             RL   ++ +KK   E DW    P+ ++ +++  L+ K+  +  VLS++W+YLW +   LD
Sbjct:    13 RLCSPESSDKKSGYEVDWVRDLPESLICHVLLNLSTKDVIKNCVLSTKWRYLWRYVPGLD 72

Query:    65 FAGIGKDIIFPSKEEKSEYVCWVNKILSLHKGSNINKFRIR--CTL--DNSHGR-DITNW 119
                   D       E + +V +V++ LS +  S +NKF++   C L  D   G   +  W
Sbjct:    73 LDC--SDFT-----EYNTFVSFVDRFLSTNTESYLNKFKLGFDCDLVGDEETGNAQMARW 125

Query:   120 IYTATAKKVQNFELDFWPPSHINDYAFPLERYNFLKRGHGLSGIK------SLRSLCLNA 173
             I     +KVQ+ +L+ W    I    +  +    LK    +  I       S++ + L+ 
Sbjct:   126 INDVVKRKVQHLDLE-WGALEIPPIVYVCKSLVSLKLCGVILPIPEFVCLPSVKVIVLDW 184

Query:   174 LKVSGEV-LEFFIHSCPHLEHLYV--ANSSELLSLKVVGSSI 212
             +K + ++ LE  I  C  L+ L +  +N+  +  L+V   S+
Sbjct:   185 VKFANDLALEMLISGCLVLKSLTLCRSNNDNVKVLRVRSQSL 226

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2201527 AT1G66310 "AT1G66310" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
 Identities = 50/193 (25%), Positives = 88/193 (45%)

Query:    14 EKKENMEDWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNFTTALDFAGIGKDII 73
             ++ ++  DW    P+ +L +I+  L  K+  +TSVLSS+W+ LW     LD      D  
Sbjct:    12 KQSDDEVDWLRDLPESLLCHILLNLPTKDVVKTSVLSSKWRNLWRLVPGLDLDS--SDFT 69

Query:    74 FPSKEEKSEYVCWVNKILSLHKGSNINKFRIR--CTLDN---SHGRDITNWIYTATAKKV 128
                  E + +V ++++ +S H    + KF++R  C L+    S    I  WI     +KV
Sbjct:    70 -----ENNTFVSFIDRFMSFHSDLYLKKFKLRFFCNLNGDEVSENAHIARWINDVVKRKV 124

Query:   129 QNFELDFW-----PPS-HINDYAFPLERYNFLKRGHGLSGIKSLRSLCLNALKVSGEV-L 181
              N +L  W     PP  ++ +    L+          L+ +  ++ + L  +K + ++ L
Sbjct:   125 HNLDLT-WGAVEIPPILYLCNSLVSLKLCGVTLPNLELTSLPCVKVIVLEWVKFANDLAL 183

Query:   182 EFFIHSCPHLEHL 194
             E  I  C  LE L
Sbjct:   184 EMLISGCLVLESL 196

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2162454 AT5G22700 "AT5G22700" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
 Identities = 56/201 (27%), Positives = 95/201 (47%)

Query:    18 NMEDWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNFTTALDFAGIGKDIIFPSK 77
             N  D  S  PD++L  I+S L  K A  TS+LS+RW+ +W  T  LD      DI   + 
Sbjct:     3 NRGDRISSLPDELLCQILSNLPTKNAVTTSILSTRWRSIWLSTPVLDI-----DI--DAF 55

Query:    78 EEKSEYVCWVNKILSLHKGSNINKFRIRCTLDNSHGRDITNWIYTATAKKVQNFELDFWP 137
             ++ + +V + ++ L   K S ++KF++    D+     I  WI  A  +++Q+ E+D   
Sbjct:    56 DDATTFVSFASRFLEFSKDSCLHKFKLSVERDDVDMCTIMPWIQDAVNRRIQHLEVDCRF 115

Query:   138 PSHINDYAFPLE--------RYNFLK-RGHGLSGIKSLRSLCLNA-LKVSGEVLEFFIHS 187
               H       L         R +F+    +    + +L+ + L   +    E LE FI S
Sbjct:   116 SFHFEAVYLTLYLSETLVSLRLHFVTLHRYEFVSLPNLKVMHLEENIYYCLETLENFISS 175

Query:   188 CPHLEHLYVANSSELLSLKVV 208
             CP LE L V    ++++ K++
Sbjct:   176 CPVLEDLTVVRIVDIITEKIL 196

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2008276 AT1G51370 "AT1G51370" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 3.6e-13, P = 3.6e-13
 Identities = 98/406 (24%), Positives = 179/406 (44%)

Query:    14 EKKENMEDWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNFTTALDFAGIGKDII 73
             +K  + ED  S+ P+ ++  I+  L+ K++ RTS LS++W+YLW     LD         
Sbjct:    12 DKVSHEEDRISQLPEPLISEILFHLSTKDSVRTSALSTKWRYLWQSVPGLDLDPY----- 66

Query:    74 FPSKEEKSEYVCWVNKILSLHKGSNINKFRIRCTLDNSHGR-DITNWIYTATAKKVQNFE 132
               +    +  V +V      H+ S I K R+   L   H + D+ +WI  AT +++Q+ +
Sbjct:    67 --ASSNTNTIVSFVESFFDSHRDSWIRKLRL--DLGYHHDKYDLMSWIDAATTRRIQHLD 122

Query:   133 LDFWPPSHINDYAFPLERYNFLK-RGHGLSGIKSLRSLCLNAL---KVS--GEV-LEFFI 185
             +  +  + I    +       L+ R   L+  + +   CL  +    VS   E  L+  I
Sbjct:   123 VHCFHDNKIPLSIYTCTTLVHLRLRWAVLTNPEFVSLPCLKIMHFENVSYPNETTLQKLI 182

Query:   186 HSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFR---YSG 242
                P LE L + ++       +   S  LK LDI+      ++ I A  L   R   YS 
Sbjct:   183 SGSPVLEELILFSTMYPKGNVLQLRSDTLKRLDIN---EFIDVVIYAPLLQCLRAKMYST 239

Query:   243 KDIKLHVGNVPQLVDV-VIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWE 301
             K+ ++     P  +D+  ++    +Q +  I  ++    +++  DL   +  + EF  + 
Sbjct:   240 KNFQIISSGFPAKLDIDFVNTGGRYQKKKVIEDILIDISRVR--DLVISSNTWKEFFLYS 297

Query:   302 LPK-LLHLKLTITEPNCESLLG----LSFVLKACPFLQKLVIKIWNNNRTI--GEKRHQ- 353
               + LL  +  I+  N    +     L  +L++CP L+ L++++  N  T   GEKR   
Sbjct:   298 KSRPLLQFRY-ISHLNARFYISDLEMLPTLLESCPKLESLILEMVKNQSTRRHGEKREPN 356

Query:   354 -----IPVHLHQHLKVVEL-HEFRWLQIDPEIAFFIFRNAKVLEKM 393
                  +P  L   LK VEL       + + E+  ++  N+ VL+K+
Sbjct:   357 VMVSTVPWCLVSSLKFVELKRSIPRYEGEMELVRYVLTNSTVLKKL 402

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2201512 AT1G66290 "AT1G66290" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 8.8e-13, Sum P(2) = 8.8e-13
 Identities = 55/227 (24%), Positives = 103/227 (45%)

Query:     3 KRARLTPADTPEKKENME----DWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWN 58
             +R R   + +PE  +N      DW S  P+ ++V ++  L  K+  +TSVLS++W+ +W 
Sbjct:     7 RRVRTKRSCSPESSDNGSGDEVDWISDLPEALIVLVLLNLPTKDVIKTSVLSTKWRNIWR 66

Query:    59 FTTALDFAGIGKDIIFPSKEEKSEYVCWVNKILSLHKGSNINKFRIRCTLDNSHGRDITN 118
             +   LD      +  F   +  + ++   ++ +  ++   +NKF++RC  D     D+  
Sbjct:    67 YVPRLDL----DNRHFTEFDSLASFI---DRFMRSNR--KVNKFKLRCGSDLDGDVDLAT 117

Query:   119 ----WIYTATAKKVQNFELDFWPPSHINDYAFPLERYNFLKRGH-GLS-----GIKSLRS 168
                 WIY A  +KVQ+ ++  WP   I    +  E    LK     L+      + SL+ 
Sbjct:   118 CSWKWIYMAIKRKVQHIDVT-WPGVRIYPEIYNCESLVSLKLSEVTLTKPEFVSLPSLKV 176

Query:   169 LCLNALKVSGE-VLEFFIHSCPHLEHLYVANS--SELLSLKVVGSSI 212
             L L+ ++   E   +  +  CP LE   +       +  L+V+  S+
Sbjct:   177 LVLDWVEFYNEFAFDMLMSGCPVLESFTLCRRYLDNVRVLRVISQSL 223

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2177396 AT5G38390 "AT5G38390" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
 Identities = 72/235 (30%), Positives = 109/235 (46%)

Query:    21 DWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNFTTALDFAGIGKDIIFPSKEEK 80
             D  S  P ++L +I+S LT KEAA TSVLS RW+ L  F   +D   +  DI       +
Sbjct:     2 DLLSNLPYELLCHILSFLTTKEAALTSVLSKRWRNLIAFVPNVDI--VDHDI-------R 52

Query:    81 SEYVCWVNKILSLHKGSNINKFRIRCTLDNSHGRDITNWIYTATAKKVQNFELDFWPPSH 140
               ++ +V+++L+L   S INKF + C+  +S   D   WI     + V    L  +  S 
Sbjct:    53 ELFMDFVDRVLALQGNSPINKFSLDCSGVDSDRVDC--WIQNVMVRGVSELNLSIFVDSV 110

Query:   141 I-NDY-AFP--LERYNFLKRGHG----LSG---IKSLRSLCLNALKVSGEVLEFFIHSCP 189
               +DY  FP   E    +K G      L G   +  L++L L ++ +S E  E  +H+ P
Sbjct:   111 FEDDYNLFPKVFENKKLVKLGLSYISWLDGSIFLPMLKTLVLESVLLSVEKFEILLHALP 170

Query:   190 HLEHLYVANS--SELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRYSG 242
              LE L + N    E   + ++ SS  LK L I++      +      L    YSG
Sbjct:   171 ALEELVMNNIYWKERDVVDLIVSSESLKTLTINFIVCTHTLSFDTPILAYLSYSG 225

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2010032 AT1G13570 "AT1G13570" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 99/418 (23%), Positives = 185/418 (44%)

Query:    21 DWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNFTTALDFAGIGKDIIFPSKEE- 79
             D+ S  P  I+ NI++RL++++A RTSVLSS+W+Y W+  T L F    +  + PS +  
Sbjct:     6 DFISDLPQSIIENILTRLSIRDAIRTSVLSSKWRYKWSTLTDLVF---DEKCVSPSNDRC 62

Query:    80 --KSEYVCWVNKILSLHKGSNINKFRIRCTLDNSHGRDITNWIYTATAKKVQNFELDFWP 137
               ++  V ++  +L LH+G  I+KF++  +       DI  W+   +   ++   L    
Sbjct:    63 VVETNLVRFITGVLLLHQGP-IHKFQLSTSFKQCRP-DIDQWLLFLSRNGIKELVLKLGE 120

Query:   138 PS-HINDYAFPLERYNFLKRGHG-------LSGIKSLRSLCLNALKVSGEVLEFFIHSCP 189
                 +    F   +   L+  H          G   L+SL L+ + V+ EV+E  I  CP
Sbjct:   121 GEFRVPACLFNCLKLTCLELCHCEFDPPQYFKGFSYLKSLNLHQILVAPEVIESLISGCP 180

Query:   190 HLEHLYVANSSELLSLKVVGSSIPLKYLD-----IHYCYSMKEIEISAS-----SLVSFR 239
              LE L ++    L+ L +   ++   YLD     I    + K + IS S      +  F 
Sbjct:   181 LLEFLSLSYFDSLV-LSISAPNLMYLYLDGEFKDIFLENTPKLVAISVSMYMHEDVTDFE 239

Query:   240 YSGK-DIKLHVGNVPQLVDVV--IHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFME 296
              S   ++   +G VP L  +V  I+      +    G +   +  LKT++L    +V  E
Sbjct:   240 QSSDYNLVKFLGGVPLLEKLVGYIYFTKYLSIGDDPGRLPLTYIHLKTIELY---QVCFE 296

Query:   297 FGHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPV 356
                 E+  L+ L+L    PN + L   +  ++  P L++    ++  +       +++P 
Sbjct:   297 DAD-EV--LVLLRLVTHSPNLKELKVSASPVQPFP-LEEEGFDLFERDYF----DYKLP- 347

Query:   357 HLHQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEKMIIKPSSSRRKRALKHCANMLK 414
                  L+ V++ +   ++ + E   F+   + VLE + +  S S +   +     +L+
Sbjct:   348 ----SLESVKITDASGIRYELEFIRFLLGTSPVLETVTVSSSLSDKDAKMDMVIELLR 401

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2081172 AT3G59210 "AT3G59210" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 71/245 (28%), Positives = 113/245 (46%)

Query:    20 EDWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNFTTALDF---AGIGKDIIFPS 76
             +D  +  PD++L  I+S L+ KEAA TS+LS RW+YL+     LDF     +  ++    
Sbjct:     6 KDIINCLPDNLLCQILSNLSTKEAALTSLLSKRWRYLFALVPNLDFDVLPSLHPEVAMQD 65

Query:    77 KEEKSEYVCWVNKILSLHKGSNINKFRIRCTLDNSHGRDITNWIYTATAKKVQNFELD-- 134
             +++ S ++ +V+++L L    +INKF ++C  D     D+  WI       V +  L   
Sbjct:    66 QDQTS-FIDFVDRVLKLRGKDHINKFSLKCG-DGIEDEDVFPWILNTLRHGVSDLSLHVS 123

Query:   135 ----FWPPSHINDYAFPLERYNFLKRGHGLSGIKSLRSLCLNALK---VSGEVLE----- 182
                 +W PS +    F  +    LK G        LR++CL  LK   +   V E     
Sbjct:   124 PSLVYWLPSKV----FASKTLVRLKIGPKDGPRVKLRNVCLPKLKTLNLDSVVFEEGKIG 179

Query:   183 F--FIHSCPHLEHLYVANSS-ELLSLKVVGSSIPLKYLDIHYCYSM---KEIEISASSLV 236
             F   +  CP LE L + N + +      V S I LK L ++  +S    K +     ++V
Sbjct:   180 FAKLLSGCPVLEELSLLNLAWDRWDSCSVSSKI-LKRLTLYCAHSSRNPKSVSFDTPNVV 238

Query:   237 SFRYS 241
              F YS
Sbjct:   239 YFEYS 243

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: 4342442 OsFBL34 - F-box domain and LRR containing protein, expressed (496 aa) (Oryza sativa Japonica)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	428
pfam08387	51	pfam08387, FBD, FBD	7e-06
pfam00646	48	pfam00646, F-box, F-box domain	5e-04
smart00579	72	smart00579, FBD, domain in FBox and BRCT domain co	0.002

>gnl|CDD|203925 pfam08387, FBD, FBD

 Score = 42.5 bits (101), Expect = 7e-06
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 358 LHQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEKMII 395
           L   L+ VE   +R  + + E+A +I  NA+VL+KM I
Sbjct: 12  LLSSLETVEWRGYRGEEEELELAKYILENARVLKKMTI 49

This region is found in F-box (pfam00646) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes. In fact, several family members are annotated as being similar to transcription factors. Length = 51

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 37.2 bits (87), Expect = 5e-04
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 21 DWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWN 58
                PDD+L+ I+SRL  K+  R S++S RW+ L +
Sbjct: 1  FSLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVD 38

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|214730 smart00579, FBD, domain in FBox and BRCT domain containing plant proteins

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 361 HLKVVELHEFRWLQIDPEIAFFIFRNAKVLEKMIIKPSSSRRKRALKHCANMLKD 415
            L+V+E+  +R  + + E+  +   NA  L+K+ I   +S  +  L+    +LK+
Sbjct: 6   SLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDEEKLE----ILKE 56

Length = 72

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	428
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.65
KOG4341	483	consensus F-box protein containing LRR [General fu	99.57
smart00579	72	FBD domain in FBox and BRCT domain containing plan	99.09
PF08387	51	FBD: FBD; InterPro: IPR013596 This region is found	99.03
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.75
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.37
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.31
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.3
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.28
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.21
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.07
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.05
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.95
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.86
KOG4341	483	consensus F-box protein containing LRR [General fu	97.71
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.7
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.44
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.43
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.43
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.42
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.1
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.02
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	96.93
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.84
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.84
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.83
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	96.78
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.62
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	96.54
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	96.45
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	95.69
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	95.61
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	95.4
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	95.25
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	94.71
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	94.41
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	94.14
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	93.96
PRK15386	426	type III secretion protein GogB; Provisional	93.86
KOG2997	366	consensus F-box protein FBX9 [General function pre	93.64
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	93.42
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	92.89
KOG2123	388	consensus Uncharacterized conserved protein [Funct	92.6
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.42
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	92.09
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	91.5
KOG2982	418	consensus Uncharacterized conserved protein [Funct	91.2
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	91.03
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	90.82
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	90.39
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	90.29
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	89.98
KOG0617	264	consensus Ras suppressor protein (contains leucine	89.18
PRK15386	426	type III secretion protein GogB; Provisional	88.04
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	87.74
KOG3864	221	consensus Uncharacterized conserved protein [Funct	87.54
KOG2123	388	consensus Uncharacterized conserved protein [Funct	87.5
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	86.55
PF13013	109	F-box-like_2: F-box-like domain	85.42
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	85.39
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	83.8
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	81.02
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	81.01
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	80.59
KOG0617	264	consensus Ras suppressor protein (contains leucine	80.28
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	80.13

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=7.6e-17  Score=141.91  Aligned_cols=271  Identities=21%  Similarity=0.306  Sum_probs=155.5

Q ss_pred             CCCCcHHHHHHHHhcCChHHHHHHHHhhHHHhhh------ccccceEEec--CCCCCCCCCChhhHHHHHHHHHHHHhhC
Q 014227           23 FSKFPDDILVNIISRLTLKEAARTSVLSSRWKYL------WNFTTALDFA--GIGKDIIFPSKEEKSEYVCWVNKILSLH   94 (428)
Q Consensus        23 ~s~LPd~iL~~Ils~L~~~d~~~~s~vskrWr~l------w~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~v~~~l~~~   94 (428)
                      |..|||||+..||+.|+.+|+.+.+.|||||.++      |..   +|+.  .+.              .....+++.+ 
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~---lDl~~r~i~--------------p~~l~~l~~r-  159 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT---LDLTGRNIH--------------PDVLGRLLSR-  159 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee---eccCCCccC--------------hhHHHHHHhC-
Confidence            7899999999999999999999999999999874      554   3332  111              1233333322 


Q ss_pred             CCCCeeEEEEEeecCCCccchHHHHHHHHHhCCCeEEEEEeCCCCCCCccccchhhhhccCCCCCCCCCcccceEEeeeE
Q 014227           95 KGSNINKFRIRCTLDNSHGRDITNWIYTATAKKVQNFELDFWPPSHINDYAFPLERYNFLKRGHGLSGIKSLRSLCLNAL  174 (428)
Q Consensus        95 ~~~~l~~l~l~~~~~~~~~~~~~~wl~~~~~~~l~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~  174 (428)
                       |  |..|++.  ....+...++.... ..+..+|++++......   .-.+-          ..+..|..|+.|+|.+.
T Consensus       160 -g--V~v~Rla--r~~~~~prlae~~~-~frsRlq~lDLS~s~it---~stl~----------~iLs~C~kLk~lSlEg~  220 (419)
T KOG2120|consen  160 -G--VIVFRLA--RSFMDQPRLAEHFS-PFRSRLQHLDLSNSVIT---VSTLH----------GILSQCSKLKNLSLEGL  220 (419)
T ss_pred             -C--eEEEEcc--hhhhcCchhhhhhh-hhhhhhHHhhcchhhee---HHHHH----------HHHHHHHhhhhcccccc
Confidence             3  5555543  11111122222222 22345888888654321   00110          01235899999999999


Q ss_pred             EeehHHHHHHHhcCCcccceeecccCCceeeE---EecCCCCcceEEeeecCCcceEE-----EECCCcceEEEcceeee
Q 014227          175 KVSGEVLEFFIHSCPHLEHLYVANSSELLSLK---VVGSSIPLKYLDIHYCYSMKEIE-----ISASSLVSFRYSGKDIK  246 (428)
Q Consensus       175 ~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~---i~~~~~~L~~L~l~~c~~l~~i~-----i~ap~L~~L~~~~~~~~  246 (428)
                      ++.|..... ++.-.+|+.|+|..|.+++.-.   +-.+|++|..|++++|...+...     -..|+|..|+++|+.-.
T Consensus       221 ~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn  299 (419)
T KOG2120|consen  221 RLDDPIVNT-IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN  299 (419)
T ss_pred             ccCcHHHHH-HhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh
Confidence            987764443 6667889999999999876322   22467899999999997443221     12488999998887432


Q ss_pred             ee-------cCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeee--cccCCCCCCCccEEEEEeecCCC
Q 014227          247 LH-------VGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVF--MEFGHWELPKLLHLKLTITEPNC  317 (428)
Q Consensus       247 ~~-------~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~  317 (428)
                      +.       ...+|+|.+++++++..-.-+ .+..+ -.++.|++|.++.|-...  +.+.+...+.|..|++.+    .
T Consensus       300 l~~sh~~tL~~rcp~l~~LDLSD~v~l~~~-~~~~~-~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g----~  373 (419)
T KOG2120|consen  300 LQKSHLSTLVRRCPNLVHLDLSDSVMLKND-CFQEF-FKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFG----C  373 (419)
T ss_pred             hhhhHHHHHHHhCCceeeeccccccccCch-HHHHH-HhcchheeeehhhhcCCChHHeeeeccCcceEEEEecc----c
Confidence            21       224666666666544322111 11122 355566666665441100  011144555666666522    2


Q ss_pred             CchhHHHHHHHhCCCccEEE
Q 014227          318 ESLLGLSFVLKACPFLQKLV  337 (428)
Q Consensus       318 ~~~~~l~~lL~~~P~L~~L~  337 (428)
                      ..+..+.-+.+.||+|+.-.
T Consensus       374 vsdt~mel~~e~~~~lkin~  393 (419)
T KOG2120|consen  374 VSDTTMELLKEMLSHLKINC  393 (419)
T ss_pred             cCchHHHHHHHhCccccccc
Confidence            23333455555666655433

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.57  E-value=6.9e-16  Score=141.82  Aligned_cols=339  Identities=16%  Similarity=0.208  Sum_probs=202.5

Q ss_pred             CCcHHHHHHHHhcCChHHHHHHHHhhHHHhhh------ccccceEEec-CCCCCCCCCChhhHHHHHHHHHHHHhhCCCC
Q 014227           25 KFPDDILVNIISRLTLKEAARTSVLSSRWKYL------WNFTTALDFA-GIGKDIIFPSKEEKSEYVCWVNKILSLHKGS   97 (428)
Q Consensus        25 ~LPd~iL~~Ils~L~~~d~~~~s~vskrWr~l------w~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~   97 (428)
                      .||.|++.+|||+|.++...+++.+|+-|.-.      |..+...+|. +..              -..|..++.+ .|.
T Consensus        74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~--------------g~VV~~~~~R-cgg  138 (483)
T KOG4341|consen   74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVD--------------GGVVENMISR-CGG  138 (483)
T ss_pred             cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCC--------------CcceehHhhh-hcc
Confidence            59999999999999999999999999999864      6554444333 111              1223333333 344


Q ss_pred             CeeEEEEEeecCCCccchHHHHHHH--HHhCCCeEEEEEeCCCCCCCccccchhhhhccCCCCCCCCCcccceEEeeeEE
Q 014227           98 NINKFRIRCTLDNSHGRDITNWIYT--ATAKKVQNFELDFWPPSHINDYAFPLERYNFLKRGHGLSGIKSLRSLCLNALK  175 (428)
Q Consensus        98 ~l~~l~l~~~~~~~~~~~~~~wl~~--~~~~~l~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~  175 (428)
                      .++.+.++.-....    . +-+..  ...+++++|.+..+..-    ..-.+..+        ...|++|+.|.|..|.
T Consensus       139 ~lk~LSlrG~r~v~----~-sslrt~~~~CpnIehL~l~gc~~i----Td~s~~sl--------a~~C~~l~~l~L~~c~  201 (483)
T KOG4341|consen  139 FLKELSLRGCRAVG----D-SSLRTFASNCPNIEHLALYGCKKI----TDSSLLSL--------ARYCRKLRHLNLHSCS  201 (483)
T ss_pred             ccccccccccccCC----c-chhhHHhhhCCchhhhhhhcceec----cHHHHHHH--------HHhcchhhhhhhcccc
Confidence            48888876432111    1 11222  23468888877555421    11111111        2358999999999976


Q ss_pred             -eehHHHHHHHhcCCcccceeecccCCceeeEEe---cCCCCcceEEeeecCCcc-----eEEEECCCcceEEEcce---
Q 014227          176 -VSGEVLEFFIHSCPHLEHLYVANSSELLSLKVV---GSSIPLKYLDIHYCYSMK-----EIEISASSLVSFRYSGK---  243 (428)
Q Consensus       176 -~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~---~~~~~L~~L~l~~c~~l~-----~i~i~ap~L~~L~~~~~---  243 (428)
                       +++..+.++..+||+|+.|++.+|+.+..=.+.   ..++.++.+...+|...+     .+.-..+.+.++++..+   
T Consensus       202 ~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~l  281 (483)
T KOG4341|consen  202 SITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQL  281 (483)
T ss_pred             hhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccc
Confidence             666778888999999999999999866531111   134556677666776322     22222333444442222   


Q ss_pred             ---eeeeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeee-eecccC--CCCCCCccEEEEEeecCCC
Q 014227          244 ---DIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNE-VFMEFG--HWELPKLLHLKLTITEPNC  317 (428)
Q Consensus       244 ---~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~-~~~~~~--~~~~~~L~~L~l~~~~~~~  317 (428)
                         .....-..+..|+.+....+...+-..+..+. +++++|+.|.+..+.. ....+.  ...++.|+.|.+...  +.
T Consensus       282 TD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg-~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~--~~  358 (483)
T KOG4341|consen  282 TDEDLWLIACGCHALQVLCYSSCTDITDEVLWALG-QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEEC--GL  358 (483)
T ss_pred             cchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHh-cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccc--ce
Confidence               11111123444555544433332211122566 8999999999987742 223332  567788999988554  33


Q ss_pred             CchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCcCccCCccEEEEeeeeeCCchHHHHHHHHhcccccccEEEec
Q 014227          318 ESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVHLHQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEKMIIKP  397 (428)
Q Consensus       318 ~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i~~  397 (428)
                      ..+..+..+-.+||.|++|.++.+....++|...-..-.|-..+|..+++.+.+...   +-+-..+.++++||++.+..
T Consensus       359 ~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~---d~~Le~l~~c~~Leri~l~~  435 (483)
T KOG4341|consen  359 ITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT---DATLEHLSICRNLERIELID  435 (483)
T ss_pred             ehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch---HHHHHHHhhCcccceeeeec
Confidence            334467888899999999999855322222221111224667889999999877663   22233456899999988765


Q ss_pred             Cchh
Q 014227          398 SSSR  401 (428)
Q Consensus       398 ~~~~  401 (428)
                      ....
T Consensus       436 ~q~v  439 (483)
T KOG4341|consen  436 CQDV  439 (483)
T ss_pred             hhhh
Confidence            5443

>smart00579 FBD domain in FBox and BRCT domain containing plant proteins

Probab=99.09  E-value=1.7e-10  Score=83.23  Aligned_cols=70  Identities=19%  Similarity=0.282  Sum_probs=56.3

Q ss_pred             cCccCCccEEEEeeeeeCCchHHHHHHHHhcccccccEEEecCchhHHHHHHHHHHH-hcccCCCcceEEe
Q 014227          356 VHLHQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEKMIIKPSSSRRKRALKHCANM-LKDKLPQGVDLVV  425 (428)
Q Consensus       356 ~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  425 (428)
                      +|+.++|+.|+|.+|.|.++|+++++|||+||+.||+|+|..++...........+. ..+|+|++++|.+
T Consensus         1 ~cl~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~~~~~~~~i~~~L~~~~~aS~~c~i~~   71 (72)
T smart00579        1 ECLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDDEKLEILKELLSLPRASSSCQVQF   71 (72)
T ss_pred             CcchheEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecCCccHHHHHHHHHHhCcCCCCceEEEe
Confidence            477889999999999999999999999999999999999998765433222222222 2399999999986

>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members

Probab=99.03  E-value=2.1e-10  Score=76.12  Aligned_cols=44  Identities=43%  Similarity=0.557  Sum_probs=42.3

Q ss_pred             CCcCccCCccEEEEeeeeeCCchHHHHHHHHhcccccccEEEec
Q 014227          354 IPVHLHQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEKMIIKP  397 (428)
Q Consensus       354 ~p~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i~~  397 (428)
                      .|+|+.+||+.|+|.||.|.++|+++++|+++||++||+|+|..
T Consensus         8 ~p~Cl~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~~   51 (51)
T PF08387_consen    8 VPECLLSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTISF   51 (51)
T ss_pred             CccchhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEEC
Confidence            78999999999999999999999999999999999999999963

Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.75  E-value=7.9e-09  Score=67.63  Aligned_cols=35  Identities=34%  Similarity=0.659  Sum_probs=30.8

Q ss_pred             CCCCcHHHHHHHHhcCChHHHHHHHHhhHHHhhhc
Q 014227           23 FSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLW   57 (428)
Q Consensus        23 ~s~LPd~iL~~Ils~L~~~d~~~~s~vskrWr~lw   57 (428)
                      |..||+||+.+||++|+.+|.++++.|||+|+++.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~   35 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA   35 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            56899999999999999999999999999999864

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.37  E-value=1.2e-07  Score=62.43  Aligned_cols=37  Identities=41%  Similarity=0.662  Sum_probs=31.2

Q ss_pred             CCCCcHHHHHHHHhcCChHHHHHHHHhhHHHhhhccc
Q 014227           23 FSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNF   59 (428)
Q Consensus        23 ~s~LPd~iL~~Ils~L~~~d~~~~s~vskrWr~lw~~   59 (428)
                      |+.||+|++.+||++|+.+|.++++.|||+|+++...
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~   39 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS   39 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence            5689999999999999999999999999999997654

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.31  E-value=8.8e-07  Score=83.84  Aligned_cols=165  Identities=16%  Similarity=0.035  Sum_probs=78.3

Q ss_pred             CCcccceEEeeeEEee--hHH---HHHHHhcCCcccceeecccCCceee-----EEecCCCCcceEEeeecCCcceEEEE
Q 014227          162 GIKSLRSLCLNALKVS--GEV---LEFFIHSCPHLEHLYVANSSELLSL-----KVVGSSIPLKYLDIHYCYSMKEIEIS  231 (428)
Q Consensus       162 ~~~~L~~L~L~~~~~~--~~~---l~~ll~~cp~Le~L~L~~~~~~~~l-----~i~~~~~~L~~L~l~~c~~l~~i~i~  231 (428)
                      .+++|++|.+.+..+.  ...   +...+..+++|+.|.|.+|......     .+... ++|++|++.+|.. ..-...
T Consensus        49 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~-~~~~~~  126 (319)
T cd00116          49 PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGL-GDRGLR  126 (319)
T ss_pred             hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCcc-chHHHH
Confidence            4677888888877765  222   3344556778888888877643210     11111 3477777766642 100000


Q ss_pred             CCCcceEEEcceeeeeecCCC-CCeeEEEEeccCcch--hhHHHhhccccCCcceeEEeeeeeeeecccC-----CCCCC
Q 014227          232 ASSLVSFRYSGKDIKLHVGNV-PQLVDVVIHGAPLFQ--VRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-----HWELP  303 (428)
Q Consensus       232 ap~L~~L~~~~~~~~~~~~~~-p~L~~l~l~~~~~~~--~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-----~~~~~  303 (428)
                                  .....+... ++|+++++..+....  ...+...+ ..+.+|++|+++.+.......+     ...++
T Consensus       127 ------------~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~  193 (319)
T cd00116         127 ------------LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL-RANRDLKELNLANNGIGDAGIRALAEGLKANC  193 (319)
T ss_pred             ------------HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH-HhCCCcCEEECcCCCCchHHHHHHHHHHHhCC
Confidence                        000011223 455555554444331  11111222 4555666666655533321111     23345


Q ss_pred             CccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227          304 KLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIW  341 (428)
Q Consensus       304 ~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~  341 (428)
                      +|++|++..+.........+...+..+|+|+.|++..+
T Consensus       194 ~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n  231 (319)
T cd00116         194 NLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN  231 (319)
T ss_pred             CCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence            66666664432222222334444555666666666543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.30  E-value=1e-06  Score=96.28  Aligned_cols=214  Identities=20%  Similarity=0.132  Sum_probs=115.4

Q ss_pred             CCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeE-EecCCCCcceEEeeecCCcceE---EEECCCcce
Q 014227          162 GIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLK-VVGSSIPLKYLDIHYCYSMKEI---EISASSLVS  237 (428)
Q Consensus       162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~-i~~~~~~L~~L~l~~c~~l~~i---~i~ap~L~~  237 (428)
                      ++++|+.|+|++..+.+.. .  ....++|+.|+|.++...+.+. .-..+++|+.|++.++.....+   .-+.++|++
T Consensus       116 ~l~~L~~L~Ls~n~l~~~~-p--~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  192 (968)
T PLN00113        116 TSSSLRYLNLSNNNFTGSI-P--RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF  192 (968)
T ss_pred             cCCCCCEEECcCCcccccc-C--ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence            5677777777776654321 0  1346677777777765322111 0123467777777776522211   123467777


Q ss_pred             EEEcceee----eeecCCCCCeeEEEEeccCcch-hhHHHhhccccCCcceeEEeeeeeeeecccC--CCCCCCccEEEE
Q 014227          238 FRYSGKDI----KLHVGNVPQLVDVVIHGAPLFQ-VRYFIGLVVCCFPQLKTLDLECCNEVFMEFG--HWELPKLLHLKL  310 (428)
Q Consensus       238 L~~~~~~~----~~~~~~~p~L~~l~l~~~~~~~-~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~--~~~~~~L~~L~l  310 (428)
                      |++.+...    +-.+.++++|+.+++..+.... ...   .+ ..+++|++|+++.+.... ..|  ...+++|++|.|
T Consensus       193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~---~l-~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L  267 (968)
T PLN00113        193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY---EI-GGLTSLNHLDLVYNNLTG-PIPSSLGNLKNLQYLFL  267 (968)
T ss_pred             eeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh---hH-hcCCCCCEEECcCceecc-ccChhHhCCCCCCEEEC
Confidence            77765532    2345567777777776544332 111   12 667788888887664332 223  556677888777


Q ss_pred             EeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCcC--ccCCccEEEEeeeeeCCchHHHHHHHHhccc
Q 014227          311 TITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVH--LHQHLKVVELHEFRWLQIDPEIAFFIFRNAK  388 (428)
Q Consensus       311 ~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~~--~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~  388 (428)
                      ..+....    .+..-+..+++|+.|++..+..       ....|..  -..+|+.+.+.+-.-....    -..+.+.+
T Consensus       268 ~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l-------~~~~p~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~l~  332 (968)
T PLN00113        268 YQNKLSG----PIPPSIFSLQKLISLDLSDNSL-------SGEIPELVIQLQNLEILHLFSNNFTGKI----PVALTSLP  332 (968)
T ss_pred             cCCeeec----cCchhHhhccCcCEEECcCCee-------ccCCChhHcCCCCCcEEECCCCccCCcC----ChhHhcCC
Confidence            4432111    1123345677888888764321       1112322  2467888877653222111    12245778


Q ss_pred             ccccEEEecC
Q 014227          389 VLEKMIIKPS  398 (428)
Q Consensus       389 ~L~~l~i~~~  398 (428)
                      .|+.+.+...
T Consensus       333 ~L~~L~L~~n  342 (968)
T PLN00113        333 RLQVLQLWSN  342 (968)
T ss_pred             CCCEEECcCC
Confidence            8999888644

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.28  E-value=1.1e-06  Score=55.40  Aligned_cols=33  Identities=39%  Similarity=0.711  Sum_probs=31.2

Q ss_pred             CcHHHHHHHHhcCChHHHHHHHHhhHHHhhhcc
Q 014227           26 FPDDILVNIISRLTLKEAARTSVLSSRWKYLWN   58 (428)
Q Consensus        26 LPd~iL~~Ils~L~~~d~~~~s~vskrWr~lw~   58 (428)
                      ||+|++..||++++.+|+++++.|||+|+.+..
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~   33 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLID   33 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence            799999999999999999999999999998754

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.21  E-value=2.2e-06  Score=81.03  Aligned_cols=216  Identities=15%  Similarity=0.045  Sum_probs=115.7

Q ss_pred             CCCcccceEEeeeEEeeh---HHHHHHHhcCCcccceeecccCCce-ee-E---EecCC-CCcceEEeeecCCcceEEEE
Q 014227          161 SGIKSLRSLCLNALKVSG---EVLEFFIHSCPHLEHLYVANSSELL-SL-K---VVGSS-IPLKYLDIHYCYSMKEIEIS  231 (428)
Q Consensus       161 ~~~~~L~~L~L~~~~~~~---~~l~~ll~~cp~Le~L~L~~~~~~~-~l-~---i~~~~-~~L~~L~l~~c~~l~~i~i~  231 (428)
                      ..+++|+.|+|.++.+.+   ..+..+..+ ++|+.|++.+|.... .+ .   ....+ ++|+.|++.+|.- ..-.  
T Consensus        78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l-~~~~--  153 (319)
T cd00116          78 TKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRL-EGAS--  153 (319)
T ss_pred             HhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcC-CchH--
Confidence            357899999999998764   235555555 789999999986431 00 0   11122 6777787777751 1000  


Q ss_pred             CCCcceEEEcceeeeeecCCCCCeeEEEEeccCcch--hhHHHhhccccCCcceeEEeeeeeeeecc---cC--CCCCCC
Q 014227          232 ASSLVSFRYSGKDIKLHVGNVPQLVDVVIHGAPLFQ--VRYFIGLVVCCFPQLKTLDLECCNEVFME---FG--HWELPK  304 (428)
Q Consensus       232 ap~L~~L~~~~~~~~~~~~~~p~L~~l~l~~~~~~~--~~~~~~l~~~~~~~l~~L~l~~~~~~~~~---~~--~~~~~~  304 (428)
                         +.       .....+..+++|+++++..+...+  ...+...+ ..+++|+.|+++.+......   +.  ...+++
T Consensus       154 ---~~-------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l-~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~  222 (319)
T cd00116         154 ---CE-------ALAKALRANRDLKELNLANNGIGDAGIRALAEGL-KANCNLEVLDLNNNGLTDEGASALAETLASLKS  222 (319)
T ss_pred             ---HH-------HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHH-HhCCCCCEEeccCCccChHHHHHHHHHhcccCC
Confidence               00       000012233455555554443332  11222222 45568888888766433221   11  556778


Q ss_pred             ccEEEEEeecCCCCchhHHHHHHHh----CCCccEEEEEEecCCCC-cccccccCCcCccCCccEEEEeeee-eCCchHH
Q 014227          305 LLHLKLTITEPNCESLLGLSFVLKA----CPFLQKLVIKIWNNNRT-IGEKRHQIPVHLHQHLKVVELHEFR-WLQIDPE  378 (428)
Q Consensus       305 L~~L~l~~~~~~~~~~~~l~~lL~~----~P~L~~L~i~~~~~~~~-~~~~~~~~p~~~~~~L~~v~i~~f~-g~~~e~~  378 (428)
                      |++|++..+.   ....++..+.+.    .+.|+.|.+..+..... ........+.+  .+|+.+.+.+-. +.+.+..
T Consensus       223 L~~L~ls~n~---l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~--~~L~~l~l~~N~l~~~~~~~  297 (319)
T cd00116         223 LEVLNLGDNN---LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEK--ESLLELDLRGNKFGEEGAQL  297 (319)
T ss_pred             CCEEecCCCc---CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcC--CCccEEECCCCCCcHHHHHH
Confidence            8888885432   222344555554    37888888876531100 00000101222  567777666422 3344567


Q ss_pred             HHHHHHhcccccccEEEe
Q 014227          379 IAFFIFRNAKVLEKMIIK  396 (428)
Q Consensus       379 ~~~~ll~~a~~L~~l~i~  396 (428)
                      +++-+..+.+.|+.+.|.
T Consensus       298 ~~~~~~~~~~~~~~~~~~  315 (319)
T cd00116         298 LAESLLEPGNELESLWVK  315 (319)
T ss_pred             HHHHHhhcCCchhhcccC
Confidence            777777777788877664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.07  E-value=7.7e-06  Score=89.50  Aligned_cols=172  Identities=20%  Similarity=0.190  Sum_probs=75.7

Q ss_pred             CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceee-EEecCCCCcceEEeeecCCcceEE---EECCCc
Q 014227          160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSL-KVVGSSIPLKYLDIHYCYSMKEIE---ISASSL  235 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~---i~ap~L  235 (428)
                      +..+++|++|+|.++.+... +...+.++++|+.|.|.+|...+.+ ..-..+++|+.|.+.++.....+.   -..++|
T Consensus       160 ~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  238 (968)
T PLN00113        160 IGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL  238 (968)
T ss_pred             HhcCCCCCEEECccCccccc-CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCC
Confidence            34455555555555443221 1112344555555555554322111 000123455555555543211110   123556


Q ss_pred             ceEEEcceee----eeecCCCCCeeEEEEeccCcch-hhHHHhhccccCCcceeEEeeeeeeeecccC--CCCCCCccEE
Q 014227          236 VSFRYSGKDI----KLHVGNVPQLVDVVIHGAPLFQ-VRYFIGLVVCCFPQLKTLDLECCNEVFMEFG--HWELPKLLHL  308 (428)
Q Consensus       236 ~~L~~~~~~~----~~~~~~~p~L~~l~l~~~~~~~-~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~--~~~~~~L~~L  308 (428)
                      +.|++.+...    +..+.++++|+.+.+..+.... ...   -+ ..+++|+.|+++.+.... ..|  ...+++|+.|
T Consensus       239 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~---~l-~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L  313 (968)
T PLN00113        239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP---SI-FSLQKLISLDLSDNSLSG-EIPELVIQLQNLEIL  313 (968)
T ss_pred             CEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch---hH-hhccCcCEEECcCCeecc-CCChhHcCCCCCcEE
Confidence            6665554422    2234455666666665443221 111   11 455666666665553221 122  3455666666


Q ss_pred             EEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227          309 KLTITEPNCESLLGLSFVLKACPFLQKLVIKIW  341 (428)
Q Consensus       309 ~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~  341 (428)
                      ++..+....    .+...+..+|+|+.|.+...
T Consensus       314 ~l~~n~~~~----~~~~~~~~l~~L~~L~L~~n  342 (968)
T PLN00113        314 HLFSNNFTG----KIPVALTSLPRLQVLQLWSN  342 (968)
T ss_pred             ECCCCccCC----cCChhHhcCCCCCEEECcCC
Confidence            664332111    11233456677777776644

>PLN03210 Resistant to P

Probab=98.05  E-value=9.7e-06  Score=89.63  Aligned_cols=84  Identities=25%  Similarity=0.330  Sum_probs=39.4

Q ss_pred             CCCCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEe-cCCCCcceEEeeecCCcceEE--EECC
Q 014227          157 GHGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVV-GSSIPLKYLDIHYCYSMKEIE--ISAS  233 (428)
Q Consensus       157 p~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~-~~~~~L~~L~l~~c~~l~~i~--i~ap  233 (428)
                      |.+...+++|+.|+|.++..-.. +.. ++.+++|+.|.|.+|..+..+.-. ..+++|+.|++.+|..++.+.  ++.+
T Consensus       627 ~~~~~~l~~Lk~L~Ls~~~~l~~-ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~  704 (1153)
T PLN03210        627 WDGVHSLTGLRNIDLRGSKNLKE-IPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLK  704 (1153)
T ss_pred             ccccccCCCCCEEECCCCCCcCc-CCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCC
Confidence            44455677777777766531100 011 445666666666666544322111 123455555555554443332  1234


Q ss_pred             CcceEEEcc
Q 014227          234 SLVSFRYSG  242 (428)
Q Consensus       234 ~L~~L~~~~  242 (428)
                      +|+.|.+.+
T Consensus       705 sL~~L~Lsg  713 (1153)
T PLN03210        705 SLYRLNLSG  713 (1153)
T ss_pred             CCCEEeCCC
Confidence            444444443

syringae 6; Provisional

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=4.2e-07  Score=81.11  Aligned_cols=175  Identities=18%  Similarity=0.137  Sum_probs=106.7

Q ss_pred             cccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceee--EEecCCCCcceEEeeecCCcceEEE-----ECCCcc
Q 014227          164 KSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSL--KVVGSSIPLKYLDIHYCYSMKEIEI-----SASSLV  236 (428)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l--~i~~~~~~L~~L~l~~c~~l~~i~i-----~ap~L~  236 (428)
                      ..|+.|+|+...++...+..+++.|..|+.|.|.+-...+.+  .|.. ...|+.|+++.|..+....+     ++..|.
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHh
Confidence            579999999999999999999999999999999987654433  2332 27899999999986554322     356676


Q ss_pred             eEEEcceee--e---e-ecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeee-eecccC-CCCCCCccEE
Q 014227          237 SFRYSGKDI--K---L-HVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNE-VFMEFG-HWELPKLLHL  308 (428)
Q Consensus       237 ~L~~~~~~~--~---~-~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~-~~~~~~-~~~~~~L~~L  308 (428)
                      .|+++=+..  +   . ...--+.|+.+++..+...-....+..++..+++|.+|+++.+.. ....+. +.+|+.|++|
T Consensus       264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l  343 (419)
T KOG2120|consen  264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL  343 (419)
T ss_pred             hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence            666542211  1   1 111234556666643322111111122237788888888876632 222222 6777788888


Q ss_pred             EEEeecCCCCchhHHHHHHHhCCCccEEEEEEec
Q 014227          309 KLTITEPNCESLLGLSFVLKACPFLQKLVIKIWN  342 (428)
Q Consensus       309 ~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~  342 (428)
                      +++.++....   ...--+.+.|.|..|++.++-
T Consensus       344 SlsRCY~i~p---~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  344 SLSRCYDIIP---ETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             ehhhhcCCCh---HHeeeeccCcceEEEEecccc
Confidence            7755432221   112234577888888877653

>PLN03210 Resistant to P

Probab=97.86  E-value=3.4e-05  Score=85.43  Aligned_cols=125  Identities=18%  Similarity=0.175  Sum_probs=78.3

Q ss_pred             CCCCCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEE---EC
Q 014227          156 RGHGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEI---SA  232 (428)
Q Consensus       156 lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i---~a  232 (428)
                      +|..+ .+.+|+.|+|.+..+..  +..-+..+++|+.|+|.+|..+..+.--+.+++|+.|++.+|..+..+..   +.
T Consensus       604 lP~~f-~~~~L~~L~L~~s~l~~--L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L  680 (1153)
T PLN03210        604 MPSNF-RPENLVKLQMQGSKLEK--LWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYL  680 (1153)
T ss_pred             CCCcC-CccCCcEEECcCccccc--cccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhcc
Confidence            34443 56888888888876542  22225678999999999887655433233458999999999986655532   35


Q ss_pred             CCcceEEEccee----eeeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeee
Q 014227          233 SSLVSFRYSGKD----IKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECC  290 (428)
Q Consensus       233 p~L~~L~~~~~~----~~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~  290 (428)
                      ++|+.|++.++.    ++.. .++++|+.+.+..+....     .+. ....+|+.|.++.+
T Consensus       681 ~~L~~L~L~~c~~L~~Lp~~-i~l~sL~~L~Lsgc~~L~-----~~p-~~~~nL~~L~L~~n  735 (1153)
T PLN03210        681 NKLEDLDMSRCENLEILPTG-INLKSLYRLNLSGCSRLK-----SFP-DISTNISWLDLDET  735 (1153)
T ss_pred             CCCCEEeCCCCCCcCccCCc-CCCCCCCEEeCCCCCCcc-----ccc-cccCCcCeeecCCC
Confidence            788888888752    1211 257778888776553221     122 33345566665544

syringae 6; Provisional

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.71  E-value=9.1e-07  Score=82.48  Aligned_cols=178  Identities=18%  Similarity=0.269  Sum_probs=99.4

Q ss_pred             CCCcccceEEeeeEE-eehHHHHHHHhcCCcccceeecccCCceeeE---EecCCCCcceEEeeecCCcceEE-----EE
Q 014227          161 SGIKSLRSLCLNALK-VSGEVLEFFIHSCPHLEHLYVANSSELLSLK---VVGSSIPLKYLDIHYCYSMKEIE-----IS  231 (428)
Q Consensus       161 ~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~---i~~~~~~L~~L~l~~c~~l~~i~-----i~  231 (428)
                      ..||+.+.|.+.+|. +++..+..+-..|+.|+.|.+..|..+++..   +...|++|+.|.+++|+.+..-.     -.
T Consensus       161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG  240 (483)
T KOG4341|consen  161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG  240 (483)
T ss_pred             hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence            468999999888887 6777788888889999999999988776543   33467899999999998654421     12


Q ss_pred             CCCcceEEEcceee-ee-----ecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecc-cC--CCCC
Q 014227          232 ASSLVSFRYSGKDI-KL-----HVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFME-FG--HWEL  302 (428)
Q Consensus       232 ap~L~~L~~~~~~~-~~-----~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~-~~--~~~~  302 (428)
                      +.+++.+..+|+.- +.     .-..++.+.++++..+...+-...+.+. ..+..++.|..+.+...... +.  ...+
T Consensus       241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~-~~c~~lq~l~~s~~t~~~d~~l~aLg~~~  319 (483)
T KOG4341|consen  241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIA-CGCHALQVLCYSSCTDITDEVLWALGQHC  319 (483)
T ss_pred             chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHh-hhhhHhhhhcccCCCCCchHHHHHHhcCC
Confidence            34455554454411 10     1123333444443322211111222333 55566666666554322111 11  4445


Q ss_pred             CCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227          303 PKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIW  341 (428)
Q Consensus       303 ~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~  341 (428)
                      .+|+.|.+..  +......++..+-++||.|+.+.+..+
T Consensus       320 ~~L~~l~l~~--c~~fsd~~ft~l~rn~~~Le~l~~e~~  356 (483)
T KOG4341|consen  320 HNLQVLELSG--CQQFSDRGFTMLGRNCPHLERLDLEEC  356 (483)
T ss_pred             CceEEEeccc--cchhhhhhhhhhhcCChhhhhhccccc
Confidence            6666666633  222334445555566666666666543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.70  E-value=1.5e-05  Score=72.98  Aligned_cols=267  Identities=18%  Similarity=0.147  Sum_probs=146.3

Q ss_pred             HHHHHHHHhhCCCCCeeEEEEEeecCCCccchHHHHHHHHHhC--CCeEEEEE-eCCCCCCCccccchhhhhccCCCCCC
Q 014227           84 VCWVNKILSLHKGSNINKFRIRCTLDNSHGRDITNWIYTATAK--KVQNFELD-FWPPSHINDYAFPLERYNFLKRGHGL  160 (428)
Q Consensus        84 ~~~v~~~l~~~~~~~l~~l~l~~~~~~~~~~~~~~wl~~~~~~--~l~~L~l~-~~~~~~~~~~~lp~~~~~~l~lp~~~  160 (428)
                      .+.|...+....  .+..+.+...   ....-..+|+....+.  .+++.++. +....  ....+|..+-   .+.+.+
T Consensus        19 ~~~v~~~~~~~~--s~~~l~lsgn---t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR--~~~Ei~e~L~---~l~~aL   88 (382)
T KOG1909|consen   19 EKDVEEELEPMD--SLTKLDLSGN---TFGTEAARAIAKVLASKKELREVNLSDMFTGR--LKDEIPEALK---MLSKAL   88 (382)
T ss_pred             hhhHHHHhcccC--ceEEEeccCC---chhHHHHHHHHHHHhhcccceeeehHhhhcCC--cHHHHHHHHH---HHHHHH
Confidence            344444444432  3666666532   3344567888776654  44444442 11111  0112222110   011334


Q ss_pred             CCCcccceEEeeeEEeehH---HHHHHHhcCCcccceeecccCCce--eeEEecCCCCcceEEeeecCCcceEEEECCCc
Q 014227          161 SGIKSLRSLCLNALKVSGE---VLEFFIHSCPHLEHLYVANSSELL--SLKVVGSSIPLKYLDIHYCYSMKEIEISASSL  235 (428)
Q Consensus       161 ~~~~~L~~L~L~~~~~~~~---~l~~ll~~cp~Le~L~L~~~~~~~--~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L  235 (428)
                      .++|.|++|+|++..++..   .+..++++|..|+.|.|.+|-.-.  .-.+.   ..|.+|.      ...-.-+.|.|
T Consensus        89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~---~al~~l~------~~kk~~~~~~L  159 (382)
T KOG1909|consen   89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG---RALFELA------VNKKAASKPKL  159 (382)
T ss_pred             hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH---HHHHHHH------HHhccCCCcce
Confidence            5789999999999998753   588999999999999999995311  10111   1122221      01111245666


Q ss_pred             ceEEEcceeee--------eecCCCCCeeEEEEeccCcch--hhHHHhhccccCCcceeEEeeeeeeeec-----ccCCC
Q 014227          236 VSFRYSGKDIK--------LHVGNVPQLVDVVIHGAPLFQ--VRYFIGLVVCCFPQLKTLDLECCNEVFM-----EFGHW  300 (428)
Q Consensus       236 ~~L~~~~~~~~--------~~~~~~p~L~~l~l~~~~~~~--~~~~~~l~~~~~~~l~~L~l~~~~~~~~-----~~~~~  300 (428)
                      +.+.+......        -.+...|.|+++++..+....  +.....-+ ..+++|+.|+++.+.+...     ...++
T Consensus       160 rv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal-~~~~~LevLdl~DNtft~egs~~LakaL~  238 (382)
T KOG1909|consen  160 RVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEAL-EHCPHLEVLDLRDNTFTLEGSVALAKALS  238 (382)
T ss_pred             EEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHH-HhCCcceeeecccchhhhHHHHHHHHHhc
Confidence            66665433221        123456888888887766554  21111222 7899999999987754321     12278


Q ss_pred             CCCCccEEEEEeecCCCCchhHHHH-HHHhCCCccEEEEEEecCCCCcccccccCCcCccCCccEEEEeeee
Q 014227          301 ELPKLLHLKLTITEPNCESLLGLSF-VLKACPFLQKLVIKIWNNNRTIGEKRHQIPVHLHQHLKVVELHEFR  371 (428)
Q Consensus       301 ~~~~L~~L~l~~~~~~~~~~~~l~~-lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~~~~~~L~~v~i~~f~  371 (428)
                      .+++|+.|.+..+.-.......+.. +-+..|+|+.|.+.+..... ++..-.+.+-.-...|+++.+.+-+
T Consensus       239 s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~-da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  239 SWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITR-DAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             ccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHH-HHHHHHHHHHhcchhhHHhcCCccc
Confidence            8889999998655433333434443 44478999999998753111 1100000111114678888887644

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.44  E-value=1.3e-05  Score=75.32  Aligned_cols=176  Identities=18%  Similarity=0.107  Sum_probs=113.7

Q ss_pred             CCCcccceEEeeeEEeehH-HHHHHHhcCCcccceeecccCCce--eeEEecCCCCcceEEeeecCC----cceEEEECC
Q 014227          161 SGIKSLRSLCLNALKVSGE-VLEFFIHSCPHLEHLYVANSSELL--SLKVVGSSIPLKYLDIHYCYS----MKEIEISAS  233 (428)
Q Consensus       161 ~~~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~L~~~~~~~--~l~i~~~~~~L~~L~l~~c~~----l~~i~i~ap  233 (428)
                      ..|++++.|+|+..=+... .+..++...|+||.|+|.......  .-.....+++||.|.+..|..    +..+....|
T Consensus       143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP  222 (505)
T KOG3207|consen  143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP  222 (505)
T ss_pred             hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence            4599999999999888775 578889999999999998753211  111122458899999999972    345566789


Q ss_pred             CcceEEEccee-e---eeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-------CCCC
Q 014227          234 SLVSFRYSGKD-I---KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-------HWEL  302 (428)
Q Consensus       234 ~L~~L~~~~~~-~---~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-------~~~~  302 (428)
                      +|+.|.+.+.. .   .....-+..|++++++.....+.+.+ ... ..+++|+.|.++.+.......+       ...|
T Consensus       223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~-~~~-~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f  300 (505)
T KOG3207|consen  223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG-YKV-GTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF  300 (505)
T ss_pred             cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc-ccc-ccccchhhhhccccCcchhcCCCccchhhhccc
Confidence            99988776552 1   11223455688888876655542211 112 6788888888877755443333       4678


Q ss_pred             CCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227          303 PKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIW  341 (428)
Q Consensus       303 ~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~  341 (428)
                      ++|+.|.+..+....  +.. ..=++..++|+.|.+...
T Consensus       301 ~kL~~L~i~~N~I~~--w~s-l~~l~~l~nlk~l~~~~n  336 (505)
T KOG3207|consen  301 PKLEYLNISENNIRD--WRS-LNHLRTLENLKHLRITLN  336 (505)
T ss_pred             ccceeeecccCcccc--ccc-cchhhccchhhhhhcccc
Confidence            888888885543222  222 223456677777765543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.43  E-value=6e-05  Score=73.58  Aligned_cols=60  Identities=20%  Similarity=0.145  Sum_probs=36.3

Q ss_pred             ccCCcceeEEeeeeee----eecccCCCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEE
Q 014227          277 CCFPQLKTLDLECCNE----VFMEFGHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKI  340 (428)
Q Consensus       277 ~~~~~l~~L~l~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~  340 (428)
                      .++.+|++|+++..+.    ++...+...++.|++|.+.++.--...    ..-+...++||.|++..
T Consensus       362 ~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~----krAfsgl~~LE~LdL~~  425 (873)
T KOG4194|consen  362 VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP----KRAFSGLEALEHLDLGD  425 (873)
T ss_pred             HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc----hhhhccCcccceecCCC
Confidence            7778888888865543    233333566788888888554321111    33345677788877754

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.43  E-value=9.8e-05  Score=67.72  Aligned_cols=227  Identities=15%  Similarity=0.109  Sum_probs=138.3

Q ss_pred             CcccceEEeeeEEeehH---HHHHHHhcCCcccceeecccCCce-eeEEecCCCCcceEEeeecCCcceEEEECCCcceE
Q 014227          163 IKSLRSLCLNALKVSGE---VLEFFIHSCPHLEHLYVANSSELL-SLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSF  238 (428)
Q Consensus       163 ~~~L~~L~L~~~~~~~~---~l~~ll~~cp~Le~L~L~~~~~~~-~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L  238 (428)
                      +..++.|+|++-+|+.+   .+...+++-+.|+.-++.+...-. .-.++   ..|+.|        ...-+.+|+|+++
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~---e~L~~l--------~~aL~~~~~L~~l   97 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIP---EALKML--------SKALLGCPKLQKL   97 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHH---HHHHHH--------HHHHhcCCceeEe
Confidence            67888888888888765   366666666666665554432100 00111   112211        2223456777777


Q ss_pred             EEcceeee--------eecCCCCCeeEEEEeccCcch-----hhH------HHhhccccCCcceeEEeeeeeeeecc---
Q 014227          239 RYSGKDIK--------LHVGNVPQLVDVVIHGAPLFQ-----VRY------FIGLVVCCFPQLKTLDLECCNEVFME---  296 (428)
Q Consensus       239 ~~~~~~~~--------~~~~~~p~L~~l~l~~~~~~~-----~~~------~~~l~~~~~~~l~~L~l~~~~~~~~~---  296 (428)
                      ++++..+.        -.+.++..|+++++..+....     ++.      ..... ..-+.|+.+.++.+..+...   
T Consensus        98 dLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~-~~~~~Lrv~i~~rNrlen~ga~~  176 (382)
T KOG1909|consen   98 DLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKA-ASKPKLRVFICGRNRLENGGATA  176 (382)
T ss_pred             eccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhcc-CCCcceEEEEeeccccccccHHH
Confidence            77765321        124567788888887665443     111      01223 56677888887665443321   


Q ss_pred             cC--CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCcCccCCccEEEEeeeee-C
Q 014227          297 FG--HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVHLHQHLKVVELHEFRW-L  373 (428)
Q Consensus       297 ~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~~~~~~L~~v~i~~f~g-~  373 (428)
                      +.  +...+.|+.+++..+.........+..-++.||+|+.|+++..++-. .+...-+-+-+.+++|+++.+..+-- .
T Consensus       177 ~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~-egs~~LakaL~s~~~L~El~l~dcll~~  255 (382)
T KOG1909|consen  177 LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL-EGSVALAKALSSWPHLRELNLGDCLLEN  255 (382)
T ss_pred             HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh-HHHHHHHHHhcccchheeeccccccccc
Confidence            11  56668899999977655555555667778899999999998654321 11110001233457899998887553 3


Q ss_pred             CchHHHHHHHHhcccccccEEEecCchhH
Q 014227          374 QIDPEIAFFIFRNAKVLEKMIIKPSSSRR  402 (428)
Q Consensus       374 ~~e~~~~~~ll~~a~~L~~l~i~~~~~~~  402 (428)
                      ++-.++++.+-+.+|.|+.+.+.+..--+
T Consensus       256 ~Ga~a~~~al~~~~p~L~vl~l~gNeIt~  284 (382)
T KOG1909|consen  256 EGAIAFVDALKESAPSLEVLELAGNEITR  284 (382)
T ss_pred             ccHHHHHHHHhccCCCCceeccCcchhHH
Confidence            67889999999999999999988776443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.42  E-value=8e-06  Score=76.77  Aligned_cols=177  Identities=18%  Similarity=0.159  Sum_probs=121.5

Q ss_pred             CCcccceEEeeeEEeehHHHHHHHhcCCcccceeeccc---CCceeeEEecCCCCcceEEeeecC----CcceEEEECCC
Q 014227          162 GIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANS---SELLSLKVVGSSIPLKYLDIHYCY----SMKEIEISASS  234 (428)
Q Consensus       162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~---~~~~~l~i~~~~~~L~~L~l~~c~----~l~~i~i~ap~  234 (428)
                      .+..|+...|.++.+.....+.....||++++|+|+..   .....+.|...+|+|+.|.++...    .-.......+.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            57899999999999877666678899999999999864   233445666778999999998654    22333446688


Q ss_pred             cceEEEcceeeee-----ecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecc-cC-CCCCCCccE
Q 014227          235 LVSFRYSGKDIKL-----HVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFME-FG-HWELPKLLH  307 (428)
Q Consensus       235 L~~L~~~~~~~~~-----~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~-~~-~~~~~~L~~  307 (428)
                      |+.|.+++|.+..     ....+|+|..+++..+......   .....-+..|+.|+|+.+...... .+ ...|+.|+.
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~---~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIK---ATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccccee---cchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence            9999998886532     3557899999988766311100   111145677889999887554433 22 778899999


Q ss_pred             EEEEeecCCCCch--hHHHHHHHhCCCccEEEEEEe
Q 014227          308 LKLTITEPNCESL--LGLSFVLKACPFLQKLVIKIW  341 (428)
Q Consensus       308 L~l~~~~~~~~~~--~~l~~lL~~~P~L~~L~i~~~  341 (428)
                      |.++.+.......  .+..+....+|+|+.|.+...
T Consensus       276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N  311 (505)
T KOG3207|consen  276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN  311 (505)
T ss_pred             hhccccCcchhcCCCccchhhhcccccceeeecccC
Confidence            9986543322111  123445678999999999753

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.10  E-value=0.00015  Score=70.90  Aligned_cols=59  Identities=17%  Similarity=0.125  Sum_probs=33.5

Q ss_pred             CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCC--ceeeEEecCCCCcceEEeeecC
Q 014227          163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSE--LLSLKVVGSSIPLKYLDIHYCY  223 (428)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~--~~~l~i~~~~~~L~~L~l~~c~  223 (428)
                      ..+|+.|.|.+.-+..-.-+ -++..|.||+|+|.....  +..-.++.. .++++|++.+..
T Consensus       124 sghl~~L~L~~N~I~sv~se-~L~~l~alrslDLSrN~is~i~~~sfp~~-~ni~~L~La~N~  184 (873)
T KOG4194|consen  124 SGHLEKLDLRHNLISSVTSE-ELSALPALRSLDLSRNLISEIPKPSFPAK-VNIKKLNLASNR  184 (873)
T ss_pred             ccceeEEeeeccccccccHH-HHHhHhhhhhhhhhhchhhcccCCCCCCC-CCceEEeecccc
Confidence            45688899888765432111 255677888888865421  111122222 567777776543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.02  E-value=0.00046  Score=62.17  Aligned_cols=216  Identities=14%  Similarity=0.070  Sum_probs=124.1

Q ss_pred             CCcccceEEeeeEEeehH-HHHHHHhcCCcccceeecccCCceeeE-EecCCCCcceEEeeecC----CcceEEEECCCc
Q 014227          162 GIKSLRSLCLNALKVSGE-VLEFFIHSCPHLEHLYVANSSELLSLK-VVGSSIPLKYLDIHYCY----SMKEIEISASSL  235 (428)
Q Consensus       162 ~~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~L~~~~~~~~l~-i~~~~~~L~~L~l~~c~----~l~~i~i~ap~L  235 (428)
                      .+..++.|+|.+..+.++ ++..++.+.|+|+.|+|...+....+. .+.+..+|+.|.+.+..    ..++..-+-|.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            478999999999999986 599999999999999998765433322 22345788888887765    122333344666


Q ss_pred             ceEEEcceeeee------ecCC-CCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeeccc--CCCCCCCcc
Q 014227          236 VSFRYSGKDIKL------HVGN-VPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEF--GHWELPKLL  306 (428)
Q Consensus       236 ~~L~~~~~~~~~------~~~~-~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~~L~  306 (428)
                      +.|.++......      -.+. .|.+..+....+...-+....++. ..+||+..+.+..+..+...-  ....|+.+-
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~-r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~  227 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLS-RIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS  227 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHH-hhcccchheeeecCcccchhhcccCCCCCcch
Confidence            666554432110      0011 112333333222221122222455 788999999987664433222  244555555


Q ss_pred             EEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCC-C-cccccccCCcCccCCccEEEEee------eeeCCchHH
Q 014227          307 HLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNR-T-IGEKRHQIPVHLHQHLKVVELHE------FRWLQIDPE  378 (428)
Q Consensus       307 ~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~-~-~~~~~~~~p~~~~~~L~~v~i~~------f~g~~~e~~  378 (428)
                      -|.|..+..  .++.+ .+-|..+|.|..|.+..++-.. - .++.+.    .+...|..|++-+      -.-.+.|..
T Consensus       228 ~LnL~~~~i--dswas-vD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~----llIaRL~~v~vLNGskIss~er~dSEr~  300 (418)
T KOG2982|consen  228 CLNLGANNI--DSWAS-VDALNGFPQLVDLRVSENPLSDPLRGGERRF----LLIARLTKVQVLNGSKISSRERKDSERR  300 (418)
T ss_pred             hhhhccccc--ccHHH-HHHHcCCchhheeeccCCcccccccCCcceE----EEEeeccceEEecCcccchhhhhhhHHH
Confidence            666644322  23333 4557899999999998665211 1 222221    1234566665543      123356888


Q ss_pred             HHHHHHh
Q 014227          379 IAFFIFR  385 (428)
Q Consensus       379 ~~~~ll~  385 (428)
                      |++|.++
T Consensus       301 fVRyym~  307 (418)
T KOG2982|consen  301 FVRYYMS  307 (418)
T ss_pred             HHHHHhh
Confidence            9998875

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.93  E-value=0.0011  Score=36.75  Aligned_cols=25  Identities=40%  Similarity=0.720  Sum_probs=22.7

Q ss_pred             ccceEEeeeEEeehH-HHHHHHhcCC
Q 014227          165 SLRSLCLNALKVSGE-VLEFFIHSCP  189 (428)
Q Consensus       165 ~L~~L~L~~~~~~~~-~l~~ll~~cp  189 (428)
                      +||+|+|.++.+.++ .++.++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            589999999999776 6999999998

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.84  E-value=0.00037  Score=72.10  Aligned_cols=33  Identities=24%  Similarity=0.333  Sum_probs=14.3

Q ss_pred             ccceEEeeeEEeehHHHHHHHhcCCcccceeeccc
Q 014227          165 SLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANS  199 (428)
Q Consensus       165 ~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~  199 (428)
                      +++..++.........++.+...+  |++|.|.+.
T Consensus        61 ~ltki~l~~~~~~~~~~~~l~~~~--L~sl~LGnl   93 (699)
T KOG3665|consen   61 NLTKIDLKNVTLQHQTLEMLRKQD--LESLKLGNL   93 (699)
T ss_pred             eeEEeeccceecchhHHHHHhhcc--ccccCCcch
Confidence            444444444444444443322222  555555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.84  E-value=0.00042  Score=71.72  Aligned_cols=69  Identities=16%  Similarity=0.248  Sum_probs=48.9

Q ss_pred             HHHHHhCCCeEEEEEeCCCCCCCccccchhhhhccCCCCCCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeeccc
Q 014227          120 IYTATAKKVQNFELDFWPPSHINDYAFPLERYNFLKRGHGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANS  199 (428)
Q Consensus       120 l~~~~~~~l~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~  199 (428)
                      +....+.++++|++.....-   ...-|..+         ...||+|++|.+.+..+..+++..+..++|+|..|++.++
T Consensus       116 Ln~~sr~nL~~LdI~G~~~~---s~~W~~ki---------g~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T  183 (699)
T KOG3665|consen  116 LNEESRQNLQHLDISGSELF---SNGWPKKI---------GTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT  183 (699)
T ss_pred             HhHHHHHhhhhcCccccchh---hccHHHHH---------hhhCcccceEEecCceecchhHHHHhhccCccceeecCCC
Confidence            33344568999988543211   11111111         2348999999999999988889999999999999999887


Q ss_pred             C
Q 014227          200 S  200 (428)
Q Consensus       200 ~  200 (428)
                      .
T Consensus       184 n  184 (699)
T KOG3665|consen  184 N  184 (699)
T ss_pred             C
Confidence            5

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.83  E-value=4.5e-05  Score=76.47  Aligned_cols=39  Identities=18%  Similarity=0.435  Sum_probs=30.3

Q ss_pred             ccCCCCcHHHHHHHHhcCChHHHHHHHHhhHHHhhhccc
Q 014227           21 DWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNF   59 (428)
Q Consensus        21 D~~s~LPd~iL~~Ils~L~~~d~~~~s~vskrWr~lw~~   59 (428)
                      +.+...|+.....+....+..+...+..++++|......
T Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (482)
T KOG1947|consen   43 RFTLLLPDELLADLLLKLVVLDRESVSLVTRLWLTLLGS   81 (482)
T ss_pred             eeeeccccchhhhcccccccccccccchhhhhhhhhhhh
Confidence            456678888888888888888888888888888765443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=96.78  E-value=0.00068  Score=57.61  Aligned_cols=88  Identities=23%  Similarity=0.138  Sum_probs=38.3

Q ss_pred             CCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeec-cc-CCCCCCCccEEEEEeecCCCCchhHHHHHH
Q 014227          250 GNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFM-EF-GHWELPKLLHLKLTITEPNCESLLGLSFVL  327 (428)
Q Consensus       250 ~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~lL  327 (428)
                      ..++.|+.+.++.....+++.  .+. ..+++|+.|.++....... .+ +...+++|+.|+|..+-... ....=..++
T Consensus        61 ~~L~~L~~L~L~~N~I~~i~~--~l~-~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi  136 (175)
T PF14580_consen   61 PGLPRLKTLDLSNNRISSISE--GLD-KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVI  136 (175)
T ss_dssp             ---TT--EEE--SS---S-CH--HHH-HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHH
T ss_pred             cChhhhhhcccCCCCCCcccc--chH-HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHH
Confidence            346677777776665554321  122 5688999999977654332 22 26778999999996543221 222235577


Q ss_pred             HhCCCccEEEEEEe
Q 014227          328 KACPFLQKLVIKIW  341 (428)
Q Consensus       328 ~~~P~L~~L~i~~~  341 (428)
                      ..+|+|+.|+-...
T Consensus       137 ~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen  137 YKLPSLKVLDGQDV  150 (175)
T ss_dssp             HH-TT-SEETTEET
T ss_pred             HHcChhheeCCEEc
Confidence            89999999987654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.62  E-value=0.00048  Score=69.03  Aligned_cols=63  Identities=29%  Similarity=0.315  Sum_probs=35.4

Q ss_pred             ccCCcceeEEeeeee-eeecccC--CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227          277 CCFPQLKTLDLECCN-EVFMEFG--HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIW  341 (428)
Q Consensus       277 ~~~~~l~~L~l~~~~-~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~  341 (428)
                      ..+++|+.|.+..+. .....+.  ...+++|++|+|..  +......++..++.+||+|++|.+...
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~--c~~~~d~~l~~~~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSG--CHGLTDSGLEALLKNCPNLRELKLLSL  331 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeec--CccchHHHHHHHHHhCcchhhhhhhhc
Confidence            456677777755443 1222222  45566677777743  223345556666777777777665544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=96.54  E-value=0.0022  Score=67.11  Aligned_cols=156  Identities=13%  Similarity=0.108  Sum_probs=67.4

Q ss_pred             CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecC-CCCcceEEeeecCCcceEEEE-CCCcceEEE
Q 014227          163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGS-SIPLKYLDIHYCYSMKEIEIS-ASSLVSFRY  240 (428)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~-~~~L~~L~l~~c~~l~~i~i~-ap~L~~L~~  240 (428)
                      +++|++|+|.++.+..  +..-+  .+.|+.|.|.+|... .  ++.. ..+|+.|+++++. +..+.-. .++|+.|.+
T Consensus       219 ~~nL~~L~Ls~N~Lts--LP~~l--~~~L~~L~Ls~N~L~-~--LP~~l~s~L~~L~Ls~N~-L~~LP~~l~~sL~~L~L  290 (754)
T PRK15370        219 QGNIKTLYANSNQLTS--IPATL--PDTIQEMELSINRIT-E--LPERLPSALQSLDLFHNK-ISCLPENLPEELRYLSV  290 (754)
T ss_pred             ccCCCEEECCCCcccc--CChhh--hccccEEECcCCccC-c--CChhHhCCCCEEECcCCc-cCccccccCCCCcEEEC
Confidence            3566666666655432  11101  135666666665422 1  1110 1356666665443 3333211 235666666


Q ss_pred             cceeee-eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecCCCCc
Q 014227          241 SGKDIK-LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNCES  319 (428)
Q Consensus       241 ~~~~~~-~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  319 (428)
                      ++..+. +...-.++|+.+++..+....      +.....++|+.|.++.+...  .+|....++|+.|+|..+....  
T Consensus       291 s~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~------LP~~l~~sL~~L~Ls~N~Lt--~LP~~l~~sL~~L~Ls~N~L~~--  360 (754)
T PRK15370        291 YDNSIRTLPAHLPSGITHLNVQSNSLTA------LPETLPPGLKTLEAGENALT--SLPASLPPELQVLDVSKNQITV--  360 (754)
T ss_pred             CCCccccCcccchhhHHHHHhcCCcccc------CCccccccceeccccCCccc--cCChhhcCcccEEECCCCCCCc--
Confidence            554321 100001234444443322211      11012356677776655332  2332223577777775432211  


Q ss_pred             hhHHHHHHHhCCCccEEEEEEe
Q 014227          320 LLGLSFVLKACPFLQKLVIKIW  341 (428)
Q Consensus       320 ~~~l~~lL~~~P~L~~L~i~~~  341 (428)
                      .   ..-  -.++|+.|+|..+
T Consensus       361 L---P~~--lp~~L~~LdLs~N  377 (754)
T PRK15370        361 L---PET--LPPTITTLDVSRN  377 (754)
T ss_pred             C---Chh--hcCCcCEEECCCC
Confidence            1   111  1357777777654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=96.45  E-value=0.00085  Score=57.03  Aligned_cols=122  Identities=24%  Similarity=0.298  Sum_probs=37.4

Q ss_pred             CCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEE--E--ECCCcce
Q 014227          162 GIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIE--I--SASSLVS  237 (428)
Q Consensus       162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i--~ap~L~~  237 (428)
                      +.-++++|+|.+..++.  ++.+-..+.+|+.|++.++.-.. +.--..+++|+.|.+++-. +..+.  +  ..|+|+.
T Consensus        17 n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~-l~~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQITK-LEGLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred             ccccccccccccccccc--ccchhhhhcCCCEEECCCCCCcc-ccCccChhhhhhcccCCCC-CCccccchHHhCCcCCE
Confidence            34567888888877644  23333356778888887775322 1111134677777776554 33331  1  2577777


Q ss_pred             EEEcceeee-----eecCCCCCeeEEEEeccCcchh-hHHHhhccccCCcceeEEee
Q 014227          238 FRYSGKDIK-----LHVGNVPQLVDVVIHGAPLFQV-RYFIGLVVCCFPQLKTLDLE  288 (428)
Q Consensus       238 L~~~~~~~~-----~~~~~~p~L~~l~l~~~~~~~~-~~~~~l~~~~~~~l~~L~l~  288 (428)
                      |.+.+..+.     ..+..+|+|+.+++..++.... .|-.-++ ..+|+|+.|+-.
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi-~~lP~Lk~LD~~  148 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVI-YKLPSLKVLDGQ  148 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHH-HH-TT-SEETTE
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHH-HHcChhheeCCE
Confidence            777655331     1345677777777776665541 1211222 677777777754

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=95.69  E-value=0.017  Score=60.52  Aligned_cols=11  Identities=27%  Similarity=0.151  Sum_probs=6.0

Q ss_pred             CcceeEEeeee
Q 014227          280 PQLKTLDLECC  290 (428)
Q Consensus       280 ~~l~~L~l~~~  290 (428)
                      .+|+.|+++.+
T Consensus       382 ~~L~~LdLs~N  392 (788)
T PRK15387        382 SGLKELIVSGN  392 (788)
T ss_pred             cccceEEecCC
Confidence            35556665544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=95.61  E-value=0.07  Score=56.10  Aligned_cols=72  Identities=17%  Similarity=0.105  Sum_probs=33.7

Q ss_pred             CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEEECCCcceEEEcc
Q 014227          163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRYSG  242 (428)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~  242 (428)
                      .++|++|+|.+..+..  +.   ...++|+.|.+.++.. ..  ++...+.|+.|.+.++. +..+....|+|+.|++++
T Consensus       241 p~~Lk~LdLs~N~Lts--LP---~lp~sL~~L~Ls~N~L-~~--Lp~lp~~L~~L~Ls~N~-Lt~LP~~p~~L~~LdLS~  311 (788)
T PRK15387        241 PPELRTLEVSGNQLTS--LP---VLPPGLLELSIFSNPL-TH--LPALPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSD  311 (788)
T ss_pred             CCCCcEEEecCCccCc--cc---CcccccceeeccCCch-hh--hhhchhhcCEEECcCCc-cccccccccccceeECCC
Confidence            4566666666654432  11   1124566666655432 11  11111345555555553 333333345666666655


Q ss_pred             e
Q 014227          243 K  243 (428)
Q Consensus       243 ~  243 (428)
                      .
T Consensus       312 N  312 (788)
T PRK15387        312 N  312 (788)
T ss_pred             C
Confidence            4

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=95.40  E-value=0.021  Score=59.95  Aligned_cols=155  Identities=15%  Similarity=0.117  Sum_probs=91.5

Q ss_pred             cccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEEE-CCCcceEEEcc
Q 014227          164 KSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEIS-ASSLVSFRYSG  242 (428)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~-ap~L~~L~~~~  242 (428)
                      ++|+.|+|.+..+..  +..-+  +++|+.|.+.++.. ..+.-. ..++|+.|.+++|. +..+... ..+|+.|.+++
T Consensus       199 ~~L~~L~Ls~N~Lts--LP~~l--~~nL~~L~Ls~N~L-tsLP~~-l~~~L~~L~Ls~N~-L~~LP~~l~s~L~~L~Ls~  271 (754)
T PRK15370        199 EQITTLILDNNELKS--LPENL--QGNIKTLYANSNQL-TSIPAT-LPDTIQEMELSINR-ITELPERLPSALQSLDLFH  271 (754)
T ss_pred             cCCcEEEecCCCCCc--CChhh--ccCCCEEECCCCcc-ccCChh-hhccccEEECcCCc-cCcCChhHhCCCCEEECcC
Confidence            679999999887653  11111  35899999998753 322111 11479999999886 3333211 24788998876


Q ss_pred             eeee-eecCCCCCeeEEEEeccCcchhhHHHhhcccc-CCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecCCCCch
Q 014227          243 KDIK-LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCC-FPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNCESL  320 (428)
Q Consensus       243 ~~~~-~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~-~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  320 (428)
                      ..+. +.-.-.++|+.+.+..+....      +. .. .++|+.|.++.+.+.  .+|...+++|+.|.+..+....  +
T Consensus       272 N~L~~LP~~l~~sL~~L~Ls~N~Lt~------LP-~~lp~sL~~L~Ls~N~Lt--~LP~~l~~sL~~L~Ls~N~Lt~--L  340 (754)
T PRK15370        272 NKISCLPENLPEELRYLSVYDNSIRT------LP-AHLPSGITHLNVQSNSLT--ALPETLPPGLKTLEAGENALTS--L  340 (754)
T ss_pred             CccCccccccCCCCcEEECCCCcccc------Cc-ccchhhHHHHHhcCCccc--cCCccccccceeccccCCcccc--C
Confidence            6442 111112478888886654432      21 11 246777888766443  2343344789999885543221  1


Q ss_pred             hHHHHHHHhCCCccEEEEEEe
Q 014227          321 LGLSFVLKACPFLQKLVIKIW  341 (428)
Q Consensus       321 ~~l~~lL~~~P~L~~L~i~~~  341 (428)
                         ..-  -+++|+.|++...
T Consensus       341 ---P~~--l~~sL~~L~Ls~N  356 (754)
T PRK15370        341 ---PAS--LPPELQVLDVSKN  356 (754)
T ss_pred             ---Chh--hcCcccEEECCCC
Confidence               111  2479999999865

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=95.25  E-value=0.013  Score=53.65  Aligned_cols=37  Identities=27%  Similarity=0.526  Sum_probs=34.8

Q ss_pred             cccCCCCc----HHHHHHHHhcCChHHHHHHHHhhHHHhhh
Q 014227           20 EDWFSKFP----DDILVNIISRLTLKEAARTSVLSSRWKYL   56 (428)
Q Consensus        20 ~D~~s~LP----d~iL~~Ils~L~~~d~~~~s~vskrWr~l   56 (428)
                      .|-+..||    |+|...|||+|...++.++-.|||+|+++
T Consensus        72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~  112 (499)
T KOG0281|consen   72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV  112 (499)
T ss_pred             HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence            48899999    99999999999999999999999999874

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=94.71  E-value=0.029  Score=53.35  Aligned_cols=37  Identities=24%  Similarity=0.368  Sum_probs=33.5

Q ss_pred             CCCCcHHHHHHHHhcCC-hHHHHHHHHhhHHHhhhccc
Q 014227           23 FSKFPDDILVNIISRLT-LKEAARTSVLSSRWKYLWNF   59 (428)
Q Consensus        23 ~s~LPd~iL~~Ils~L~-~~d~~~~s~vskrWr~lw~~   59 (428)
                      +++||+|+|..|..+|+ .-|.+|.+.||+.||..-..
T Consensus         4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            88999999999999998 56999999999999986543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=94.41  E-value=0.0048  Score=55.80  Aligned_cols=211  Identities=19%  Similarity=0.166  Sum_probs=107.9

Q ss_pred             CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCce-------------------------eeEEecCCCCc
Q 014227          160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELL-------------------------SLKVVGSSIPL  214 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~-------------------------~l~i~~~~~~L  214 (428)
                      ..-|.+|+++.++.|.-  ..+..+...-|.|+++.+++...-.                         ...++. ...|
T Consensus       210 l~~f~~l~~~~~s~~~~--~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dT-Wq~L  286 (490)
T KOG1259|consen  210 LNAFRNLKTLKFSALST--ENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADT-WQEL  286 (490)
T ss_pred             hHHhhhhheeeeeccch--hheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecch-Hhhh
Confidence            44588999999888852  3344456667888888887642100                         001111 1334


Q ss_pred             ceEEeeecCCcceE---EEECCCcceEEEcceeee--eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeee
Q 014227          215 KYLDIHYCYSMKEI---EISASSLVSFRYSGKDIK--LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLEC  289 (428)
Q Consensus       215 ~~L~l~~c~~l~~i---~i~ap~L~~L~~~~~~~~--~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~  289 (428)
                      +.++++... +..+   .--+|.++.|.++...+.  -.+..+++|++++++.+......   ++- ..+.|+++|.+..
T Consensus       287 telDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~---Gwh-~KLGNIKtL~La~  361 (490)
T KOG1259|consen  287 TELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECV---GWH-LKLGNIKTLKLAQ  361 (490)
T ss_pred             hhccccccc-hhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhh---hhH-hhhcCEeeeehhh
Confidence            445444332 1111   112577777766544331  23556777777777655433322   222 5566777777765


Q ss_pred             eeeeecccCCCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCcCccCCccEEEEee
Q 014227          290 CNEVFMEFGHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVHLHQHLKVVELHE  369 (428)
Q Consensus       290 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~~~~~~L~~v~i~~  369 (428)
                      +.++.. ..+..+.+|..|++..+...  +... ..-+.+.|.||.+.+...+-... .+.+.-+-.-.-..=.++.+.+
T Consensus       362 N~iE~L-SGL~KLYSLvnLDl~~N~Ie--~lde-V~~IG~LPCLE~l~L~~NPl~~~-vdYRTKVLa~FGERaSE~~LD~  436 (490)
T KOG1259|consen  362 NKIETL-SGLRKLYSLVNLDLSSNQIE--ELDE-VNHIGNLPCLETLRLTGNPLAGS-VDYRTKVLARFGERASEISLDN  436 (490)
T ss_pred             hhHhhh-hhhHhhhhheeccccccchh--hHHH-hcccccccHHHHHhhcCCCcccc-chHHHHHHHHHhhhhhheecCC
Confidence            533221 11455667777777544211  1211 23345788888888765431110 0000000000112334566666


Q ss_pred             eeeCCchHHHHHHH
Q 014227          370 FRWLQIDPEIAFFI  383 (428)
Q Consensus       370 f~g~~~e~~~~~~l  383 (428)
                      -.+.+.|++-+..+
T Consensus       437 ~~~~~~ELDTV~Vl  450 (490)
T KOG1259|consen  437 EPGNQQELDTVLVL  450 (490)
T ss_pred             CCcchhhhhHHHHH
Confidence            66777777776654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=94.14  E-value=0.012  Score=60.97  Aligned_cols=60  Identities=28%  Similarity=0.257  Sum_probs=36.1

Q ss_pred             ccCCcceeEEeeeeeeeecccC--CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227          277 CCFPQLKTLDLECCNEVFMEFG--HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIW  341 (428)
Q Consensus       277 ~~~~~l~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~  341 (428)
                      ..+++|+.+++++.+.....++  .+. ++|++|+++++.....+    ..-|..|.++....+...
T Consensus       449 ~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d----~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  449 AQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFD----HKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             hhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccc----hhhhHHhhhhhheecccC
Confidence            5678888888888766655555  333 78888888665322211    334455555555555544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=93.96  E-value=0.0012  Score=65.42  Aligned_cols=85  Identities=15%  Similarity=0.112  Sum_probs=44.6

Q ss_pred             CCCCCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEec---CCCCcceEEeeecCCcceE---E
Q 014227          156 RGHGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVG---SSIPLKYLDIHYCYSMKEI---E  229 (428)
Q Consensus       156 lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~---~~~~L~~L~l~~c~~l~~i---~  229 (428)
                      +|+....+.+|++|.|++.++..-.+.. +.+...|++|++++.+.. ...++.   ++.+|+.++++... +..+   .
T Consensus       165 LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~vLhms~TqRT-l~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecl  241 (1255)
T KOG0444|consen  165 LPPQIRRLSMLQTLKLSNNPLNHFQLRQ-LPSMTSLSVLHMSNTQRT-LDNIPTSLDDLHNLRDVDLSENN-LPIVPECL  241 (1255)
T ss_pred             cCHHHHHHhhhhhhhcCCChhhHHHHhc-Cccchhhhhhhcccccch-hhcCCCchhhhhhhhhccccccC-CCcchHHH
Confidence            4666777888899988887754433322 334445666666665421 112222   22345555554332 2211   1


Q ss_pred             EECCCcceEEEcce
Q 014227          230 ISASSLVSFRYSGK  243 (428)
Q Consensus       230 i~ap~L~~L~~~~~  243 (428)
                      ...++|+.|++++.
T Consensus       242 y~l~~LrrLNLS~N  255 (1255)
T KOG0444|consen  242 YKLRNLRRLNLSGN  255 (1255)
T ss_pred             hhhhhhheeccCcC
Confidence            23456666666655

>PRK15386 type III secretion protein GogB; Provisional

Probab=93.86  E-value=0.11  Score=50.22  Aligned_cols=69  Identities=19%  Similarity=0.184  Sum_probs=34.4

Q ss_pred             cccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEEECCCcceEEEc
Q 014227          164 KSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRYS  241 (428)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~  241 (428)
                      ++|++|.+.+|.--.. +...+  .+.|+.|.+.+|..+..  ++   ++|+.|.+.. .....+.---++|+.|.+.
T Consensus        72 ~sLtsL~Lsnc~nLts-LP~~L--P~nLe~L~Ls~Cs~L~s--LP---~sLe~L~L~~-n~~~~L~~LPssLk~L~I~  140 (426)
T PRK15386         72 NELTEITIENCNNLTT-LPGSI--PEGLEKLTVCHCPEISG--LP---ESVRSLEIKG-SATDSIKNVPNGLTSLSIN  140 (426)
T ss_pred             CCCcEEEccCCCCccc-CCchh--hhhhhheEccCcccccc--cc---cccceEEeCC-CCCcccccCcchHhheecc
Confidence            3578887777542110 11111  24677888877754432  22   4566666642 2222232222456666654

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=93.64  E-value=0.043  Score=49.97  Aligned_cols=35  Identities=23%  Similarity=0.359  Sum_probs=30.3

Q ss_pred             ccCCCCcHHHHHHHHhc-----CChHHHHHHHHhhHHHhh
Q 014227           21 DWFSKFPDDILVNIISR-----LTLKEAARTSVLSSRWKY   55 (428)
Q Consensus        21 D~~s~LPd~iL~~Ils~-----L~~~d~~~~s~vskrWr~   55 (428)
                      +.|+.||||||..||.+     ++.++..++|+|||.|+.
T Consensus       105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~  144 (366)
T KOG2997|consen  105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK  144 (366)
T ss_pred             hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence            45789999999999975     456999999999999975

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=93.42  E-value=0.0018  Score=64.10  Aligned_cols=41  Identities=17%  Similarity=0.250  Sum_probs=20.4

Q ss_pred             CCCCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeeccc
Q 014227          157 GHGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANS  199 (428)
Q Consensus       157 p~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~  199 (428)
                      |..+..+.+|++|++.+..+..  +..=++..|.|+.+.++..
T Consensus        48 PeEL~~lqkLEHLs~~HN~L~~--vhGELs~Lp~LRsv~~R~N   88 (1255)
T KOG0444|consen   48 PEELSRLQKLEHLSMAHNQLIS--VHGELSDLPRLRSVIVRDN   88 (1255)
T ss_pred             hHHHHHHhhhhhhhhhhhhhHh--hhhhhccchhhHHHhhhcc
Confidence            3334456666666666554211  1111555666666666544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=92.89  E-value=0.054  Score=34.39  Aligned_cols=35  Identities=29%  Similarity=0.399  Sum_probs=25.2

Q ss_pred             cccceEEeeeEEeehHHHHHHHhcCCcccceeecccC
Q 014227          164 KSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSS  200 (428)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~  200 (428)
                      ++|++|+|.+..+.+  +...++.||+|+.|.+.++.
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence            478888888887764  44447888888888888875

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.60  E-value=0.011  Score=52.98  Aligned_cols=84  Identities=21%  Similarity=0.074  Sum_probs=45.7

Q ss_pred             CCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeec-ccC-CCCCCCccEEEEEeecCCC-CchhHHHHHH
Q 014227          251 NVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFM-EFG-HWELPKLLHLKLTITEPNC-ESLLGLSFVL  327 (428)
Q Consensus       251 ~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~-~~~-~~~~~~L~~L~l~~~~~~~-~~~~~l~~lL  327 (428)
                      .+|.|+-+.++.+...++..+     ..|++|+.|.|.-+.+... ++. +..+++|+.|.|.-+-|.. ..-..=..+|
T Consensus        39 kMp~lEVLsLSvNkIssL~pl-----~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VL  113 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSLAPL-----QRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVL  113 (388)
T ss_pred             hcccceeEEeeccccccchhH-----HHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHH
Confidence            455555555554444332221     5666666666654433221 122 5666777777775544332 2222335678


Q ss_pred             HhCCCccEEEEE
Q 014227          328 KACPFLQKLVIK  339 (428)
Q Consensus       328 ~~~P~L~~L~i~  339 (428)
                      +..|||++|+=.
T Consensus       114 R~LPnLkKLDnv  125 (388)
T KOG2123|consen  114 RVLPNLKKLDNV  125 (388)
T ss_pred             HHcccchhccCc
Confidence            889999998744

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.42  E-value=0.022  Score=48.75  Aligned_cols=42  Identities=24%  Similarity=0.322  Sum_probs=25.6

Q ss_pred             CCcccceEEeeeEE-eehHHHHHHHhcCCcccceeecccCCce
Q 014227          162 GIKSLRSLCLNALK-VSGEVLEFFIHSCPHLEHLYVANSSELL  203 (428)
Q Consensus       162 ~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~L~~~~~~~  203 (428)
                      .++.++.|.+..|. ++|..++.+-...|+||+|+|.+|..++
T Consensus       123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT  165 (221)
T KOG3864|consen  123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT  165 (221)
T ss_pred             ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec
Confidence            45566666666664 5555566655566666666666666544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=92.09  E-value=0.037  Score=59.22  Aligned_cols=62  Identities=29%  Similarity=0.314  Sum_probs=30.9

Q ss_pred             CCcccceEEeeeEEe-ehHHHHHHHhcCCcccceeecccCCceeeEE-ecCCCCcceEEeeecC
Q 014227          162 GIKSLRSLCLNALKV-SGEVLEFFIHSCPHLEHLYVANSSELLSLKV-VGSSIPLKYLDIHYCY  223 (428)
Q Consensus       162 ~~~~L~~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i-~~~~~~L~~L~l~~c~  223 (428)
                      .+++|++|-+....- -...-..++.+.|.|..|+|++|...+.+.- .+.+-+|+.|+++++.
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~  606 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG  606 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC
Confidence            456677776666531 1111223455667777777776654432211 1123455555555554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=91.50  E-value=0.12  Score=46.51  Aligned_cols=168  Identities=21%  Similarity=0.135  Sum_probs=94.9

Q ss_pred             CCCCcccceEEeeeEEeeh---HHHHHHHhcCCcccceeecccCCc--eeeEEecCCCCcceEEeeecCCcceEEEECCC
Q 014227          160 LSGIKSLRSLCLNALKVSG---EVLEFFIHSCPHLEHLYVANSSEL--LSLKVVGSSIPLKYLDIHYCYSMKEIEISASS  234 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~---~~l~~ll~~cp~Le~L~L~~~~~~--~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~  234 (428)
                      +.+||+|++.+|++..|+.   ..+..++++...|+.|.+.+|..-  ..-+|.   +.|.+|...      .=.-+.|.
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig---kal~~la~n------KKaa~kp~  158 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG---KALFHLAYN------KKAADKPK  158 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHH---HHHHHHHHH------hhhccCCC
Confidence            4579999999999988764   457788899999999999888521  111222   122222110      01124566


Q ss_pred             cceEEEcceeee--------eecCCCCCeeEEEEeccCcch--hhHHH--hhccccCCcceeEEeeeeeeeec---ccC-
Q 014227          235 LVSFRYSGKDIK--------LHVGNVPQLVDVVIHGAPLFQ--VRYFI--GLVVCCFPQLKTLDLECCNEVFM---EFG-  298 (428)
Q Consensus       235 L~~L~~~~~~~~--------~~~~~~p~L~~l~l~~~~~~~--~~~~~--~l~~~~~~~l~~L~l~~~~~~~~---~~~-  298 (428)
                      |+.+.+....+.        ..+...-.|..+.+..+....  +....  ++  ..+.+|+.|+++...+...   .+. 
T Consensus       159 Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl--~y~~~LevLDlqDNtft~~gS~~La~  236 (388)
T COG5238         159 LEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGL--FYSHSLEVLDLQDNTFTLEGSRYLAD  236 (388)
T ss_pred             ceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHH--HHhCcceeeeccccchhhhhHHHHHH
Confidence            666544322110        112233467777776665543  22111  22  5678999999977643321   121 


Q ss_pred             -CCCCCCccEEEEEeecCCCCchhHHHHHHH-----hCCCccEEEEEEe
Q 014227          299 -HWELPKLLHLKLTITEPNCESLLGLSFVLK-----ACPFLQKLVIKIW  341 (428)
Q Consensus       299 -~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~-----~~P~L~~L~i~~~  341 (428)
                       .+.-++|+.|.+..+..+..   +...+++     ..|+|..|-.+..
T Consensus       237 al~~W~~lrEL~lnDClls~~---G~~~v~~~f~e~~~p~l~~L~~~Yn  282 (388)
T COG5238         237 ALCEWNLLRELRLNDCLLSNE---GVKSVLRRFNEKFVPNLMPLPGDYN  282 (388)
T ss_pred             Hhcccchhhhccccchhhccc---cHHHHHHHhhhhcCCCccccccchh
Confidence             56667789988844332323   3344444     3578887777653

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.20  E-value=0.083  Score=48.08  Aligned_cols=87  Identities=20%  Similarity=0.116  Sum_probs=60.1

Q ss_pred             CCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCC-CCCCCccEEEEEeecCCCCchhHHHHHHHh
Q 014227          251 NVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGH-WELPKLLHLKLTITEPNCESLLGLSFVLKA  329 (428)
Q Consensus       251 ~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~  329 (428)
                      .+..+.++++..+-..+++.+..++ ..+|.++.|++++......+-.. -...||+.|-|.+.   ..++.....++..
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~il-e~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT---~L~w~~~~s~l~~  144 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAIL-EQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGT---GLSWTQSTSSLDD  144 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHH-hcCccceEeeccCCcCCCccccCcccccceEEEEEcCC---CCChhhhhhhhhc
Confidence            4666777777666666566666777 89999999999888554433333 35678888888433   3445556778888


Q ss_pred             CCCccEEEEEEe
Q 014227          330 CPFLQKLVIKIW  341 (428)
Q Consensus       330 ~P~L~~L~i~~~  341 (428)
                      .|.++.|+++..
T Consensus       145 lP~vtelHmS~N  156 (418)
T KOG2982|consen  145 LPKVTELHMSDN  156 (418)
T ss_pred             chhhhhhhhccc
Confidence            888888876643

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=91.03  E-value=0.15  Score=34.87  Aligned_cols=34  Identities=35%  Similarity=0.394  Sum_probs=14.6

Q ss_pred             ccCCcceeEEeeeeeeeecccC-CCCCCCccEEEE
Q 014227          277 CCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKL  310 (428)
Q Consensus       277 ~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l  310 (428)
                      ..+++|+.|+++.+......-. +..+++|++|++
T Consensus        22 ~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l   56 (61)
T PF13855_consen   22 SNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDL   56 (61)
T ss_dssp             TTGTTESEEEETSSSESEEETTTTTTSTTESEEEE
T ss_pred             cCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeC
Confidence            4455555555554433221111 344445555544

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=90.82  E-value=0.31  Score=44.45  Aligned_cols=60  Identities=17%  Similarity=0.181  Sum_probs=30.5

Q ss_pred             CcccceEEeeeEE--eehHH-----HHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeec
Q 014227          163 IKSLRSLCLNALK--VSGEV-----LEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYC  222 (428)
Q Consensus       163 ~~~L~~L~L~~~~--~~~~~-----l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c  222 (428)
                      |..|+.|....+.  |+.+.     +..-++.+.+|.++.+..|+.-....+...-|.|..+.+.+.
T Consensus       181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s  247 (490)
T KOG1259|consen  181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNT  247 (490)
T ss_pred             hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecc
Confidence            5667777766664  32221     111144566677777777654332222222266666655543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=90.39  E-value=0.058  Score=57.80  Aligned_cols=50  Identities=20%  Similarity=0.236  Sum_probs=22.5

Q ss_pred             CCcceEEeeecCCcceEEE---ECCCcceEEEcceee---eeecCCCCCeeEEEEe
Q 014227          212 IPLKYLDIHYCYSMKEIEI---SASSLVSFRYSGKDI---KLHVGNVPQLVDVVIH  261 (428)
Q Consensus       212 ~~L~~L~l~~c~~l~~i~i---~ap~L~~L~~~~~~~---~~~~~~~p~L~~l~l~  261 (428)
                      +.|+.|++++|..+..+.-   .--+|++|++.+..+   |..+.++..|..+++.
T Consensus       571 ~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~  626 (889)
T KOG4658|consen  571 PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLE  626 (889)
T ss_pred             cceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccc
Confidence            5566666665554443321   123444444444422   2333444445555444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=90.29  E-value=0.35  Score=43.58  Aligned_cols=210  Identities=15%  Similarity=0.097  Sum_probs=119.0

Q ss_pred             HHHHHHH-HHhCCCeEEEEEeCCCCCCCccccchhhhhccCCCCCCCCCcccceEEeeeEEe---ehH------HHHHHH
Q 014227          116 ITNWIYT-ATAKKVQNFELDFWPPSHINDYAFPLERYNFLKRGHGLSGIKSLRSLCLNALKV---SGE------VLEFFI  185 (428)
Q Consensus       116 ~~~wl~~-~~~~~l~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~---~~~------~l~~ll  185 (428)
                      +...+.- .+...+.+++++..+......-.+. .         .+.+-.+|+...+++...   .+.      .+-..+
T Consensus        19 vk~v~eel~~~d~~~evdLSGNtigtEA~e~l~-~---------~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aL   88 (388)
T COG5238          19 VKGVVEELEMMDELVEVDLSGNTIGTEAMEELC-N---------VIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKAL   88 (388)
T ss_pred             hhHHHHHHHhhcceeEEeccCCcccHHHHHHHH-H---------HHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHH
Confidence            4444443 3356788888766544311111111 1         122346677766666532   222      233456


Q ss_pred             hcCCcccceeecccCC-cee----eEEecCCCCcceEEeeecCCcceEEE--ECCCcceEEEcceeeeeecCCCCCeeEE
Q 014227          186 HSCPHLEHLYVANSSE-LLS----LKVVGSSIPLKYLDIHYCYSMKEIEI--SASSLVSFRYSGKDIKLHVGNVPQLVDV  258 (428)
Q Consensus       186 ~~cp~Le~L~L~~~~~-~~~----l~i~~~~~~L~~L~l~~c~~l~~i~i--~ap~L~~L~~~~~~~~~~~~~~p~L~~l  258 (428)
                      ..||.|+...|++.-. ...    ..+-++...|++|.+.+|. +..+.-  -+..|..|-|..     ...+-|.|+.+
T Consensus        89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nK-----Kaa~kp~Le~v  162 (388)
T COG5238          89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNK-----KAADKPKLEVV  162 (388)
T ss_pred             hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHh-----hhccCCCceEE
Confidence            7899999999986532 111    1122344788999888886 332210  011233332221     23467778877


Q ss_pred             EEeccCcch--hhHHHhhccccCCcceeEEeeeeeeeeccc------CCCCCCCccEEEEEeecCCCCchhHHHHHHHhC
Q 014227          259 VIHGAPLFQ--VRYFIGLVVCCFPQLKTLDLECCNEVFMEF------GHWELPKLLHLKLTITEPNCESLLGLSFVLKAC  330 (428)
Q Consensus       259 ~l~~~~~~~--~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~  330 (428)
                      .+..+...+  ..+.-..+ ++..+++.+.+....+....+      ...++.+|+.|+|..+......-..+...+...
T Consensus       163 icgrNRlengs~~~~a~~l-~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W  241 (388)
T COG5238         163 ICGRNRLENGSKELSAALL-ESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEW  241 (388)
T ss_pred             EeccchhccCcHHHHHHHH-HhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhccc
Confidence            665444333  11111333 666888888886664433221      167888999999977766655555667777788


Q ss_pred             CCccEEEEEEec
Q 014227          331 PFLQKLVIKIWN  342 (428)
Q Consensus       331 P~L~~L~i~~~~  342 (428)
                      |+|+.|.+..|.
T Consensus       242 ~~lrEL~lnDCl  253 (388)
T COG5238         242 NLLRELRLNDCL  253 (388)
T ss_pred             chhhhccccchh
Confidence            999999998764

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=89.98  E-value=0.3  Score=33.30  Aligned_cols=39  Identities=23%  Similarity=0.343  Sum_probs=20.8

Q ss_pred             cCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeee
Q 014227          249 VGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECC  290 (428)
Q Consensus       249 ~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~  290 (428)
                      +.++++|+.+++..+....+..  +.+ .++++|+.|.++++
T Consensus        21 f~~l~~L~~L~l~~N~l~~i~~--~~f-~~l~~L~~L~l~~N   59 (61)
T PF13855_consen   21 FSNLPNLETLDLSNNNLTSIPP--DAF-SNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTTGTTESEEEETSSSESEEET--TTT-TTSTTESEEEETSS
T ss_pred             HcCCCCCCEeEccCCccCccCH--HHH-cCCCCCCEEeCcCC
Confidence            3455666666665444332110  222 67777777777654

...

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=89.18  E-value=0.0065  Score=50.49  Aligned_cols=22  Identities=27%  Similarity=0.161  Sum_probs=11.7

Q ss_pred             hhHHHHHHHhCCCccEEEEEEe
Q 014227          320 LLGLSFVLKACPFLQKLVIKIW  341 (428)
Q Consensus       320 ~~~l~~lL~~~P~L~~L~i~~~  341 (428)
                      ...+..-+.....|++|+|++.
T Consensus       162 ll~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  162 LLSLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             hhhCcHHHHHHHHHHHHhcccc
Confidence            3344444455555666666653

>PRK15386 type III secretion protein GogB; Provisional

Probab=88.04  E-value=0.71  Score=44.73  Aligned_cols=135  Identities=20%  Similarity=0.271  Sum_probs=74.9

Q ss_pred             CCcccceEEeeeEEeehHHHHHHHhcCC-cccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEEECCCcceEEE
Q 014227          162 GIKSLRSLCLNALKVSGEVLEFFIHSCP-HLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRY  240 (428)
Q Consensus       162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp-~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~  240 (428)
                      .+++++.|++++|.+..      +...| +|++|.+.+|..+..+.-.-+ ++|+.|.+.+|..+..+   -++|+.|.+
T Consensus        50 ~~~~l~~L~Is~c~L~s------LP~LP~sLtsL~Lsnc~nLtsLP~~LP-~nLe~L~Ls~Cs~L~sL---P~sLe~L~L  119 (426)
T PRK15386         50 EARASGRLYIKDCDIES------LPVLPNELTEITIENCNNLTTLPGSIP-EGLEKLTVCHCPEISGL---PESVRSLEI  119 (426)
T ss_pred             HhcCCCEEEeCCCCCcc------cCCCCCCCcEEEccCCCCcccCCchhh-hhhhheEccCccccccc---ccccceEEe
Confidence            36888888888885322      11234 588899988887654321111 57888988888655443   246777777


Q ss_pred             cceeeeeecCCCC-CeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEe
Q 014227          241 SGKDIKLHVGNVP-QLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTI  312 (428)
Q Consensus       241 ~~~~~~~~~~~~p-~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~  312 (428)
                      .+.... .+..+| +|+++.+....... .  ..+...--++|+.|.++++...  .+|..--.+|++|.+..
T Consensus       120 ~~n~~~-~L~~LPssLk~L~I~~~n~~~-~--~~lp~~LPsSLk~L~Is~c~~i--~LP~~LP~SLk~L~ls~  186 (426)
T PRK15386        120 KGSATD-SIKNVPNGLTSLSINSYNPEN-Q--ARIDNLISPSLKTLSLTGCSNI--ILPEKLPESLQSITLHI  186 (426)
T ss_pred             CCCCCc-ccccCcchHhheecccccccc-c--cccccccCCcccEEEecCCCcc--cCcccccccCcEEEecc
Confidence            544321 133343 57766663211100 0  0111011267899999776422  22311225888888844

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=87.74  E-value=0.25  Score=27.22  Aligned_cols=17  Identities=24%  Similarity=0.669  Sum_probs=12.8

Q ss_pred             CCcccceeecccCCcee
Q 014227          188 CPHLEHLYVANSSELLS  204 (428)
Q Consensus       188 cp~Le~L~L~~~~~~~~  204 (428)
                      ||+|+.|.|.+|..+++
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            67888888888876654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.54  E-value=0.11  Score=44.64  Aligned_cols=64  Identities=20%  Similarity=0.248  Sum_probs=40.5

Q ss_pred             cccceEEeeeEEee-----hHHHHHHHhcCCcccceeecccCCceee---EEecCCCCcceEEeeecCCcceE
Q 014227          164 KSLRSLCLNALKVS-----GEVLEFFIHSCPHLEHLYVANSSELLSL---KVVGSSIPLKYLDIHYCYSMKEI  228 (428)
Q Consensus       164 ~~L~~L~L~~~~~~-----~~~l~~ll~~cp~Le~L~L~~~~~~~~l---~i~~~~~~L~~L~l~~c~~l~~i  228 (428)
                      ++.-...+.-+.-.     ...++. +.+++.++.|.+.+|..+.+-   .+....++|+.|++++|+.+++-
T Consensus        96 ~~~~~~~IeaVDAsds~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~  167 (221)
T KOG3864|consen   96 PNADNVKIEAVDASDSSIMYEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG  167 (221)
T ss_pred             CCCCcceEEEEecCCchHHHHHHHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh
Confidence            34444444444433     344554 678999999999999876532   12223478888888888765443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.50  E-value=0.019  Score=51.63  Aligned_cols=104  Identities=21%  Similarity=0.227  Sum_probs=52.3

Q ss_pred             CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEEECCCcceEEEcc
Q 014227          163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRYSG  242 (428)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~  242 (428)
                      +.+.+.|+..+|.+.|-.   +....|.||.|.|.-... ..+.--..|.+|++|.+....        .+.|.+|.   
T Consensus        18 l~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNkI-ssL~pl~rCtrLkElYLRkN~--------I~sldEL~---   82 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNKI-SSLAPLQRCTRLKELYLRKNC--------IESLDELE---   82 (388)
T ss_pred             HHHhhhhcccCCCccHHH---HHHhcccceeEEeecccc-ccchhHHHHHHHHHHHHHhcc--------cccHHHHH---
Confidence            456677777777766533   244567777777643321 111111123334433332211        01111111   


Q ss_pred             eeeeeecCCCCCeeEEEEeccCcch---hhHHHhhccccCCcceeEEe
Q 014227          243 KDIKLHVGNVPQLVDVVIHGAPLFQ---VRYFIGLVVCCFPQLKTLDL  287 (428)
Q Consensus       243 ~~~~~~~~~~p~L~~l~l~~~~~~~---~~~~~~l~~~~~~~l~~L~l  287 (428)
                           .+.++|+|+.+++..++...   -.|-...+ ..+|||++|+=
T Consensus        83 -----YLknlpsLr~LWL~ENPCc~~ag~nYR~~VL-R~LPnLkKLDn  124 (388)
T KOG2123|consen   83 -----YLKNLPSLRTLWLDENPCCGEAGQNYRRKVL-RVLPNLKKLDN  124 (388)
T ss_pred             -----HHhcCchhhhHhhccCCcccccchhHHHHHH-HHcccchhccC
Confidence                 24567778888877666544   12322444 77888888874

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=86.55  E-value=1.6  Score=37.77  Aligned_cols=60  Identities=27%  Similarity=0.301  Sum_probs=38.4

Q ss_pred             CCCcccceEEeeeEEeeh--HHHHHHHhcCCcccceeecccCC--ceeeEEecCCCCcceEEeeecC
Q 014227          161 SGIKSLRSLCLNALKVSG--EVLEFFIHSCPHLEHLYVANSSE--LLSLKVVGSSIPLKYLDIHYCY  223 (428)
Q Consensus       161 ~~~~~L~~L~L~~~~~~~--~~l~~ll~~cp~Le~L~L~~~~~--~~~l~i~~~~~~L~~L~l~~c~  223 (428)
                      .++++|.+|.|...++..  ..+..   -.|+|..|.|.+.+.  ++.+.=-++||+|+.|.+-+-+
T Consensus        61 p~l~rL~tLll~nNrIt~I~p~L~~---~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np  124 (233)
T KOG1644|consen   61 PHLPRLHTLLLNNNRITRIDPDLDT---FLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP  124 (233)
T ss_pred             CCccccceEEecCCcceeeccchhh---hccccceEEecCcchhhhhhcchhccCCccceeeecCCc
Confidence            368899999999887653  33433   358888888887542  3333333456777777665543

>PF13013 F-box-like_2: F-box-like domain

Probab=85.42  E-value=1.1  Score=34.78  Aligned_cols=39  Identities=18%  Similarity=0.229  Sum_probs=31.0

Q ss_pred             cCCCCcHHHHHHHHhcCChHHHHHHHHhhH--H-Hhhh-cccc
Q 014227           22 WFSKFPDDILVNIISRLTLKEAARTSVLSS--R-WKYL-WNFT   60 (428)
Q Consensus        22 ~~s~LPd~iL~~Ils~L~~~d~~~~s~vsk--r-Wr~l-w~~~   60 (428)
                      .+.+||+||+..|+.+-...+...+...++  | |++. |..+
T Consensus        21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~~r~~~~~~L   63 (109)
T PF13013_consen   21 TLLDLPWELLQLIFDYCNDPILLALSRTCRAYRSWRDHIWYLL   63 (109)
T ss_pred             chhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            477899999999999999999988887777  4 4444 5543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=85.39  E-value=0.35  Score=47.19  Aligned_cols=141  Identities=19%  Similarity=0.161  Sum_probs=79.5

Q ss_pred             ccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEE--ECCC-cceEEEc
Q 014227          165 SLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEI--SASS-LVSFRYS  241 (428)
Q Consensus       165 ~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i--~ap~-L~~L~~~  241 (428)
                      +|+.|++.+-.+.+-  ..-+..+|.|+.|.+.+++...........+.|+.|.+++.. +..+..  ..++ |+++.+.
T Consensus       141 nL~~L~l~~N~i~~l--~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~  217 (394)
T COG4886         141 NLKELDLSDNKIESL--PSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLS  217 (394)
T ss_pred             hcccccccccchhhh--hhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhc
Confidence            888888888776442  123678899999999888754332221133678888887765 444433  1333 7777665


Q ss_pred             cee-e--eeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEee
Q 014227          242 GKD-I--KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTIT  313 (428)
Q Consensus       242 ~~~-~--~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~  313 (428)
                      +.. .  ...+...+.+..+.+........   .... ..+++++.|.++......... ...+.+|+.|.+..+
T Consensus       218 ~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~---~~~~-~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n  287 (394)
T COG4886         218 NNSIIELLSSLSNLKNLSGLELSNNKLEDL---PESI-GNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGN  287 (394)
T ss_pred             CCcceecchhhhhcccccccccCCceeeec---cchh-ccccccceecccccccccccc-ccccCccCEEeccCc
Confidence            551 1  22333444444444322211110   1222 667778888887664332221 666778888877554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=83.80  E-value=0.18  Score=45.04  Aligned_cols=34  Identities=26%  Similarity=0.379  Sum_probs=18.5

Q ss_pred             CCcceEEeeecC-----CcceEEEECCCcceEEEcceee
Q 014227          212 IPLKYLDIHYCY-----SMKEIEISASSLVSFRYSGKDI  245 (428)
Q Consensus       212 ~~L~~L~l~~c~-----~l~~i~i~ap~L~~L~~~~~~~  245 (428)
                      ++|+.|.++...     .+..+...+|+|+++.+++...
T Consensus        65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki  103 (260)
T KOG2739|consen   65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI  103 (260)
T ss_pred             chhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence            455555554431     1333344567777777776644

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=81.02  E-value=0.78  Score=41.06  Aligned_cols=91  Identities=18%  Similarity=-0.004  Sum_probs=53.9

Q ss_pred             cCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeec-cc-CCCCCCCccEEEEEeecCCCCchhHHHHH
Q 014227          249 VGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFM-EF-GHWELPKLLHLKLTITEPNCESLLGLSFV  326 (428)
Q Consensus       249 ~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~l  326 (428)
                      +..+|+|+++.+..+.......+ .+++..+++|++|+++++.+... .+ |.+.+.||..|.+..+.....+. .=..+
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l-~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~d-yre~v  138 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGL-EVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDD-YREKV  138 (260)
T ss_pred             CCCcchhhhhcccCCcccccccc-eehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcccccc-HHHHH
Confidence            34566667776655432211111 12226679999999988865532 22 37888899999885543222222 22556


Q ss_pred             HHhCCCccEEEEEEe
Q 014227          327 LKACPFLQKLVIKIW  341 (428)
Q Consensus       327 L~~~P~L~~L~i~~~  341 (428)
                      +.-.|.|+.|+-...
T Consensus       139 f~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  139 FLLLPSLKYLDGCDV  153 (260)
T ss_pred             HHHhhhhcccccccc
Confidence            777888888876544

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=81.01  E-value=0.79  Score=46.41  Aligned_cols=39  Identities=21%  Similarity=0.443  Sum_probs=36.2

Q ss_pred             CccccCCCCcHHHHHHHHhcCChHHHHHHHHhhHHHhhh
Q 014227           18 NMEDWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYL   56 (428)
Q Consensus        18 ~~~D~~s~LPd~iL~~Ils~L~~~d~~~~s~vskrWr~l   56 (428)
                      ...|.++.||-++..+||++|+.++++..+.+|+.|+.+
T Consensus       103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~  141 (537)
T KOG0274|consen  103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL  141 (537)
T ss_pred             cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence            457999999999999999999999999999999999864

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=80.59  E-value=0.32  Score=49.82  Aligned_cols=16  Identities=38%  Similarity=0.434  Sum_probs=13.6

Q ss_pred             CCcccceEEeeeEEee
Q 014227          162 GIKSLRSLCLNALKVS  177 (428)
Q Consensus       162 ~~~~L~~L~L~~~~~~  177 (428)
                      .|.+|+.|.|.+|.+.
T Consensus       107 pF~sLr~LElrg~~L~  122 (1096)
T KOG1859|consen  107 PFRSLRVLELRGCDLS  122 (1096)
T ss_pred             cccceeeEEecCcchh
Confidence            4899999999999764

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=80.28  E-value=0.1  Score=43.61  Aligned_cols=98  Identities=20%  Similarity=0.137  Sum_probs=53.5

Q ss_pred             CcceEEEcceee---eeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC--CCCCCCccEE
Q 014227          234 SLVSFRYSGKDI---KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG--HWELPKLLHL  308 (428)
Q Consensus       234 ~L~~L~~~~~~~---~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~--~~~~~~L~~L  308 (428)
                      +|+.|.+.+..+   +..++.+|+|+.+.+..........-    ++++|.|+.|++.+.......+|  +..+.-|+.|
T Consensus        57 nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprg----fgs~p~levldltynnl~e~~lpgnff~m~tlral  132 (264)
T KOG0617|consen   57 NLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRG----FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRAL  132 (264)
T ss_pred             hhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccc----cCCCchhhhhhccccccccccCCcchhHHHHHHHH
Confidence            344444444322   34556667776666643322211111    17788888888887766555666  4455666666


Q ss_pred             EEEeecCCCCchhHHHHHHHhCCCccEEEEEE
Q 014227          309 KLTITEPNCESLLGLSFVLKACPFLQKLVIKI  340 (428)
Q Consensus       309 ~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~  340 (428)
                      .+..     .++..+..=.....+|+.|.+..
T Consensus       133 yl~d-----ndfe~lp~dvg~lt~lqil~lrd  159 (264)
T KOG0617|consen  133 YLGD-----NDFEILPPDVGKLTNLQILSLRD  159 (264)
T ss_pred             HhcC-----CCcccCChhhhhhcceeEEeecc
Confidence            6632     23333344445666777776653

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=80.13  E-value=0.99  Score=24.13  Aligned_cols=22  Identities=18%  Similarity=0.169  Sum_probs=13.6

Q ss_pred             CcccceEEeeeEEeehHHHHHH
Q 014227          163 IKSLRSLCLNALKVSGEVLEFF  184 (428)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~l  184 (428)
                      +++|++|+|.++.++++.+..+
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHh
Confidence            4678888888888777665543

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	428
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-10
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 61.4 bits (149), Expect = 1e-10
 Identities = 58/332 (17%), Positives = 106/332 (31%), Gaps = 61/332 (18%)

Query: 23  FSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNFTTALDFAGIGKDIIFPSKEEKSE 82
           +   PD++L+ I S L L E  + S +  RW  L                   S  +  +
Sbjct: 9   WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL---------------ASDESLWQTLD 53

Query: 83  YVCWVNKILSLHKGSNINKFRIRCTLDNSHGRDITNWIYTATAKKVQNFELDFWPPSHIN 142
                       +  +      RC       R   +          +   +D    S I 
Sbjct: 54  LTGKNLHPDVTGRLLSQGVIAFRC------PRSFMDQPLAEHFSPFRVQHMDLSN-SVIE 106

Query: 143 DYAFPLERYNFLKRGHGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSEL 202
                            LS    L++L L  L++S  ++   +    +L  L ++  S  
Sbjct: 107 VSTL----------HGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGF 155

Query: 203 --LSLKVVGSSIP-LKYLDIHYCYSMKEIEISA------SSLVSFRYSG-------KDIK 246
              +L+ + SS   L  L++ +C+   E  +         ++     SG        D+ 
Sbjct: 156 SEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS 215

Query: 247 LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEV----FMEFGHWEL 302
             V   P LV + +  + + +   F          L+ L L  C ++     +E G   +
Sbjct: 216 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL--NYLQHLSLSRCYDIIPETLLELGE--I 271

Query: 303 PKLLHLKLTITEPNCESLLGLSFVLKACPFLQ 334
           P L  L++            L  + +A P LQ
Sbjct: 272 PTLKTLQVF----GIVPDGTLQLLKEALPHLQ 299

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 43.7 bits (103), Expect = 6e-05
 Identities = 39/192 (20%), Positives = 68/192 (35%), Gaps = 28/192 (14%)

Query: 165 SLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVAN-SSELLSLKVVGSSIPLKYLDIHYCY 223
            ++ + L+   +    L   +  C  L++L +         +  +  +  L  L++  C 
Sbjct: 94  RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS 153

Query: 224 -----SMKEIEISASSLVSFRYSG------KDIKLHVGNV-PQLVDVVIHG-APLFQVRY 270
                +++ +  S S L     S       K +++ V +V   +  + + G     Q   
Sbjct: 154 GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD 213

Query: 271 FIGLVVCCFPQLKTLDLECCNEV----FMEFGHWELPKLLHLKLTITEPNCESL--LGLS 324
              LV  C P L  LDL     +    F EF    L  L HL L+     C  +    L 
Sbjct: 214 LSTLVRRC-PNLVHLDLSDSVMLKNDCFQEFFQ--LNYLQHLSLS----RCYDIIPETLL 266

Query: 325 FVLKACPFLQKL 336
             L   P L+ L
Sbjct: 267 -ELGEIPTLKTL 277

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 28/213 (13%), Positives = 67/213 (31%), Gaps = 25/213 (11%)

Query: 160 LSGIKSLRSLCLN---ALKVSGEVLEFFIHSCPHLEHLYVANSSEL----LSLKVVGSSI 212
           ++  + +++L +      +  G+ L         LE L    +         L+ +  + 
Sbjct: 160 VTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219

Query: 213 P-LKYLDIHYCYSMKEIEI--SASSLVSFR----YSGKDIKLHVGNVPQLVDVVIHGAPL 265
             L  + +     ++ +    +A++L  F          +     N+     +   G   
Sbjct: 220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY 279

Query: 266 FQVRYFIGLVVCCFPQLKTLDLECC----NEVFMEFGHWELPKLLHLKLTITEPNCESLL 321
                   L      Q++ LDL        +          P L  L+      N     
Sbjct: 280 MGPNEMPILFPFA-AQIRKLDLLYALLETEDHCTLIQK--CPNLEVLETR----NVIGDR 332

Query: 322 GLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQI 354
           GL  + + C  L++L I+   + + + ++   +
Sbjct: 333 GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV 365

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 47.2 bits (112), Expect = 8e-06
 Identities = 35/216 (16%), Positives = 60/216 (27%), Gaps = 52/216 (24%)

Query: 164 KSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIP-LKYLDIHYC 222
             +R L L    +  E     I  CP+LE L   N      L+V+      LK L I   
Sbjct: 293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERG 352

Query: 223 YSMKEIEISAS---------------SLVSFRYSGKDIK-------------------LH 248
              + +E                    L        DI                    + 
Sbjct: 353 ADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVL 412

Query: 249 VGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWEL----PK 304
           +    ++ D+ +           +  ++    +L+            + G   +    P 
Sbjct: 413 LDREERITDLPLDNG--------VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPN 464

Query: 305 LLHLKLTITEPNCE-SLLGLSFVLKACPFLQKLVIK 339
           +  + L         S  GL    + CP LQKL ++
Sbjct: 465 VRWMLLG----YVGESDEGLMEFSRGCPNLQKLEMR 496

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 43/210 (20%), Positives = 72/210 (34%), Gaps = 35/210 (16%)

Query: 160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIP-LKYLD 218
            S    L +L L+   V    L   +  CP L+ L+V +  E   L+V+ S+   L+ L 
Sbjct: 285 YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELR 344

Query: 219 IHYCYSMKE---IEISASSLVSFRYSGKDIKL--------------HVG-NVPQLVDVVI 260
           +           + ++   LVS       ++                +  N P +    +
Sbjct: 345 VFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRL 404

Query: 261 HGAPLFQVRYF--------IGLVVCCFPQLKTLDLECC--NEVFMEFGHWELPKLLHLKL 310
                    Y          G +V     L+ L L     ++VF   G +   K+  L +
Sbjct: 405 CIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTY-AKKMEMLSV 463

Query: 311 TITEPNCE-SLLGLSFVLKACPFLQKLVIK 339
                    S LG+  VL  C  L+KL I+
Sbjct: 464 A----FAGDSDLGMHHVLSGCDSLRKLEIR 489

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 53/372 (14%), Positives = 110/372 (29%), Gaps = 86/372 (23%)

Query: 20  EDWFSKFPDDILVNIISRLT----LKEAARTSVLSSRWKYLWNFT--------------- 60
           +     FP+++L ++ S +         +        W  +  +                
Sbjct: 3   KRIALSFPEEVLEHVFSFIQLDKDRNSVSLV---CKSWYEIERWCRRKVFIGNCYAVSPA 59

Query: 61  ---------TALDFAGIGK--DIIFPSKEEKSEYVCWVNKILSLHKGSNINKFRI-RCTL 108
                     +++  G     D              W+  + S    + + + R+ R  +
Sbjct: 60  TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSS--SYTWLEEIRLKRMVV 117

Query: 109 DNSHGRDITNWIYTATAKKVQNFE-LDFWPPSHINDYAFPLERYNFLKRGHGLSGIKSLR 167
            +     I        AK  +NF+ L        +                  +  ++L+
Sbjct: 118 TDDCLELI--------AKSFKNFKVLVLSSCEGFSTDGL----------AAIAATCRNLK 159

Query: 168 SLCL---NALKVSGEVLEFFIHSCPHLEHLYVANSSELLS---LKVVGSSIP-LKYLDIH 220
            L L   +   VSG  L  F  +   L  L ++  +  +S   L+ + +  P LK L ++
Sbjct: 160 ELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN 219

Query: 221 YCYS---MKEIEISASSLVSFRYSG----------KDIKLHVGNVPQLVDVVIHGAPLFQ 267
                  +  +   A  L      G            + + +    +L    + G     
Sbjct: 220 RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRC--LSGFWDAV 277

Query: 268 VRYFIGLVVCCFPQLKTLDLECCN---EVFMEFGHWELPKLLHLKLTITEPNCESLLGLS 324
             Y   +   C  +L TL+L          ++    + PKL  L +     +     GL 
Sbjct: 278 PAYLPAVYSVC-SRLTTLNLSYATVQSYDLVKLLC-QCPKLQRLWVL----DYIEDAGLE 331

Query: 325 FVLKACPFLQKL 336
            +   C  L++L
Sbjct: 332 VLASTCKDLREL 343

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 51.8 bits (124), Expect = 3e-07
 Identities = 34/199 (17%), Positives = 62/199 (31%), Gaps = 23/199 (11%)

Query: 160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSEL--LSLKVVGSSIP-LKY 216
            S    L  + L  + V+ + LE    S  + + L +++        L  + ++   LK 
Sbjct: 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKE 160

Query: 217 LDIHYCY-------SMKEIEISASSLVSFRYSG-------KDIKLHVGNVPQLVDVVIHG 262
           LD+            +     + +SLVS   S          ++  V   P L  + ++ 
Sbjct: 161 LDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220

Query: 263 APLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNCESLL- 321
           A   +      L+    PQL+ L             +  L   L     +   +      
Sbjct: 221 AVPLEK--LATLLQRA-PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV 277

Query: 322 --GLSFVLKACPFLQKLVI 338
              L  V   C  L  L +
Sbjct: 278 PAYLPAVYSVCSRLTTLNL 296

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 3e-05
 Identities = 74/468 (15%), Positives = 141/468 (30%), Gaps = 118/468 (25%)

Query: 11  DTPEKKENMEDWFSKFPDDILVNIISRLTLKEAARTSVLSSR-WKYLWNFTTALD-FAGI 68
           +  ++  N    F+K+        +SRL      R ++L  R  K +      +D   G 
Sbjct: 114 EQRDRLYNDNQVFAKYN-------VSRLQPYLKLRQALLELRPAKNV-----LIDGVLGS 161

Query: 69  GKDIIFPSKEEKSEYVCWVNKILSLHKGSNINKFRI------RCTLDNSHGRDITNWIYT 122
           GK                   +   +K      F+I       C    +    +   +Y 
Sbjct: 162 GKT-------------WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 123 ATAKKVQNFELDFWPPSHINDYAFPLERYNFLKRGHGLSGIKSLRSLCLNALKVSGEVLE 182
                    +        I+     L R     + +       L  L L  ++ + +   
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPY----ENCL--LVLLNVQ-NAKAWN 260

Query: 183 FFIHSC----------------------PHLEH----LYVANSSELLSLKVVG---SSIP 213
            F  SC                        L+H    L       LL  K +      +P
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL-KYLDCRPQDLP 319

Query: 214 LKYLDIH-YCYSM--KEIEISASSLVSFRYSGKDIKLHVGNVPQLVDVVIHG-APLFQVR 269
            + L  +    S+  + I    ++  ++++   D KL       +++  ++   P    +
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD-KLT-----TIIESSLNVLEPAEYRK 373

Query: 270 YFIGLVVCCFPQ-----LKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNCE---SLL 321
            F  L V  FP         L L   + +  +     +   LH    + +   E   S+ 
Sbjct: 374 MFDRLSV--FPPSAHIPTILLSLIWFDVIKSDVM--VVVNKLHKYSLVEKQPKESTISIP 429

Query: 322 GLSFVLKA----CPFLQKLVIKIWNNNRTIGEKRHQIPV--------HLHQHLKVVELHE 369
            +   LK        L + ++  +N  +T  +    IP         H+  HLK +E  E
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTF-DSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488

Query: 370 FRWLQIDPEIAFF--IFRNAKVLEKMIIKPSSSRRKRALKHCANMLKD 415
                    +  F  +F + + LE+ I   S++          N L+ 
Sbjct: 489 --------RMTLFRMVFLDFRFLEQKIRHDSTAWNASG--SILNTLQQ 526

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	428
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.83
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.81
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.74
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.87
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.84
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.84
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.73
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.65
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.62
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.62
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.61
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.54
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.53
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.53
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.51
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.46
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.45
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.45
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.45
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.44
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.43
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.42
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.42
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.39
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.37
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.37
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.37
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.35
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.35
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.34
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.33
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.32
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.31
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.3
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.28
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.26
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.25
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.22
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.2
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.17
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.15
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.13
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.13
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.13
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.1
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.03
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.02
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.0
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.0
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	97.99
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.98
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.96
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.95
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.94
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	97.94
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.93
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.91
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.89
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.87
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.87
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.86
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.86
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.85
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.84
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	97.81
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.8
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.8
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.79
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.78
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.75
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.75
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.74
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.71
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.67
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.66
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.63
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.55
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.55
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.52
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.52
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.51
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.43
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.42
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.32
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.32
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.31
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.3
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.3
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.27
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.22
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.15
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.1
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.09
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.02
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	96.92
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	96.87
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	96.86
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	96.85
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	96.68
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	96.56
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.46
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	96.42
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	96.3
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	96.22
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	96.22
3e6j_A	229	Variable lymphocyte receptor diversity region; var	96.17
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	95.92
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	95.9
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	95.87
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	95.83
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	95.66
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	95.24
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	95.02
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	94.51
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	94.51
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	94.28
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	94.26
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	94.11
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	93.97
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	93.97
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	93.77
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	93.68
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	93.58
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	91.38
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	91.38
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	90.3
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	90.26
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	89.35
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	88.7
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	83.82
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	81.55

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.83  E-value=3.9e-21  Score=196.33  Aligned_cols=194  Identities=14%  Similarity=0.209  Sum_probs=121.5

Q ss_pred             cccCCCCcHHHHHHHHhcCC-hHHHHHHHHhhHHHhhhcc-ccceEEecCCCCCCCCCChhhHHHHHHHHHHHHhhCCCC
Q 014227           20 EDWFSKFPDDILVNIISRLT-LKEAARTSVLSSRWKYLWN-FTTALDFAGIGKDIIFPSKEEKSEYVCWVNKILSLHKGS   97 (428)
Q Consensus        20 ~D~~s~LPd~iL~~Ils~L~-~~d~~~~s~vskrWr~lw~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~   97 (428)
                      .|+|+.|||||+.+||+||| ++|++++++|||||+++.. ....+++......        .      ...++.+.  +
T Consensus         3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~--------~------~~~~~~~~--~   66 (594)
T 2p1m_B            3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAV--------S------PATVIRRF--P   66 (594)
T ss_dssp             -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSS--------C------HHHHHHHC--T
T ss_pred             ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeecccccc--------C------HHHHHhhC--C
Confidence            58999999999999999999 9999999999999998732 2234454422110        0      01223333  3


Q ss_pred             CeeEEEEEeecC--------CCccchHHHHHHHHHh--CCCeEEEEEeCCCCCCCccccchhhhhccCCCCCCCCCcccc
Q 014227           98 NINKFRIRCTLD--------NSHGRDITNWIYTATA--KKVQNFELDFWPPSHINDYAFPLERYNFLKRGHGLSGIKSLR  167 (428)
Q Consensus        98 ~l~~l~l~~~~~--------~~~~~~~~~wl~~~~~--~~l~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~  167 (428)
                      .++.+.+.....        ..+...+..|+.....  +++++|++..+...   . ..+..+         ...|++|+
T Consensus        67 ~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~---~-~~~~~l---------~~~~~~L~  133 (594)
T 2p1m_B           67 KVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVT---D-DCLELI---------AKSFKNFK  133 (594)
T ss_dssp             TCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCC---H-HHHHHH---------HHHCTTCC
T ss_pred             CceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEc---H-HHHHHH---------HHhCCCCc
Confidence            388888875310        1122456678887664  58999999754321   1 111111         11489999


Q ss_pred             eEEeeeE-EeehHHHHHHHhcCCcccceeecccCCcee-----e-EEecCCCCcceEEeeecC-C-----cceEEEECCC
Q 014227          168 SLCLNAL-KVSGEVLEFFIHSCPHLEHLYVANSSELLS-----L-KVVGSSIPLKYLDIHYCY-S-----MKEIEISASS  234 (428)
Q Consensus       168 ~L~L~~~-~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~-----l-~i~~~~~~L~~L~l~~c~-~-----l~~i~i~ap~  234 (428)
                      +|+|.+| .+.+..+..++.+||+|++|+|.+|. ++.     + .+...+++|++|++.+|. .     +..+...+|+
T Consensus       134 ~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~  212 (594)
T 2p1m_B          134 VLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPN  212 (594)
T ss_dssp             EEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTT
T ss_pred             EEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCC
Confidence            9999999 57777888889999999999999986 221     1 222355789999888775 1     1122223577


Q ss_pred             cceEEEcce
Q 014227          235 LVSFRYSGK  243 (428)
Q Consensus       235 L~~L~~~~~  243 (428)
                      |+.|++.++
T Consensus       213 L~~L~L~~~  221 (594)
T 2p1m_B          213 LKSLKLNRA  221 (594)
T ss_dssp             CCEEECCTT
T ss_pred             CcEEecCCC
Confidence            888777654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.81  E-value=2.4e-20  Score=190.47  Aligned_cols=148  Identities=15%  Similarity=0.269  Sum_probs=85.9

Q ss_pred             CCCcHHHHHHHHhcC-ChHHHHHHHHhhHHHhhhccccc-eEEecCCCCCCCCCChhhHHHHHHHHHHHHhhCCCCCeeE
Q 014227           24 SKFPDDILVNIISRL-TLKEAARTSVLSSRWKYLWNFTT-ALDFAGIGKDIIFPSKEEKSEYVCWVNKILSLHKGSNINK  101 (428)
Q Consensus        24 s~LPd~iL~~Ils~L-~~~d~~~~s~vskrWr~lw~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~l~~  101 (428)
                      ++||||++.+||+|| +++|++++++|||||++++...+ .+.+...              +...+..++.+.+.  ++.
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~--------------~~~~~~~~~~~~~~--L~~   77 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALC--------------YTATPDRLSRRFPN--LRS   77 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCG--------------GGSCHHHHHHHCTT--CSE
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeec--------------cccChHHHHHhCCC--CeE
Confidence            389999999999999 79999999999999999865432 2222200              01122334444433  888


Q ss_pred             EEEEeecC--------CCccchHHHHHHHHHh--CCCeEEEEEeCCCCCCCccccchhhhhccCCCCCCCCCcc-cceEE
Q 014227          102 FRIRCTLD--------NSHGRDITNWIYTATA--KKVQNFELDFWPPSHINDYAFPLERYNFLKRGHGLSGIKS-LRSLC  170 (428)
Q Consensus       102 l~l~~~~~--------~~~~~~~~~wl~~~~~--~~l~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~-L~~L~  170 (428)
                      +.+.....        .........|+.....  +++++|++..+...   ...+ .. +.        ..|++ |++|+
T Consensus        78 L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~---~~~~-~~-l~--------~~~~~~L~~L~  144 (592)
T 3ogk_B           78 LKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVS---DLDL-DR-LA--------KARADDLETLK  144 (592)
T ss_dssp             EEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCC---HHHH-HH-HH--------HHHGGGCCEEE
T ss_pred             EEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEec---HHHH-HH-HH--------HhccccCcEEE
Confidence            88864210        1222345567776653  58888888654221   0000 00 00        01333 66666


Q ss_pred             eeeEE-eehHHHHHHHhcCCcccceeecccC
Q 014227          171 LNALK-VSGEVLEFFIHSCPHLEHLYVANSS  200 (428)
Q Consensus       171 L~~~~-~~~~~l~~ll~~cp~Le~L~L~~~~  200 (428)
                      |.++. +.+..+..+..+||+|++|+|.+|.
T Consensus       145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  175 (592)
T 3ogk_B          145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESS  175 (592)
T ss_dssp             EESCEEEEHHHHHHHHHHCTTCSEEECTTCE
T ss_pred             CcCCCCcCHHHHHHHHhhCCCCCEEECcccc
Confidence            66654 4445555555666666666666653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.74  E-value=8.3e-19  Score=166.12  Aligned_cols=37  Identities=32%  Similarity=0.506  Sum_probs=34.7

Q ss_pred             ccCCCCcHHHHHHHHhcCChHHHHHHHHhhHHHhhhc
Q 014227           21 DWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLW   57 (428)
Q Consensus        21 D~~s~LPd~iL~~Ils~L~~~d~~~~s~vskrWr~lw   57 (428)
                      ..|+.||||++.+||++|+.+|+++++.|||+|+++.
T Consensus         7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~   43 (336)
T 2ast_B            7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   43 (336)
T ss_dssp             CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHH
T ss_pred             CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence            4589999999999999999999999999999999984

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.96  E-value=4.8e-10  Score=105.38  Aligned_cols=172  Identities=20%  Similarity=0.197  Sum_probs=100.2

Q ss_pred             CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEE----------
Q 014227          160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIE----------  229 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~----------  229 (428)
                      +..+++|++|+|.+..+.  .+...+..+++|+.|+|.++........-..+++|+.|++.+|...+.+.          
T Consensus       100 l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~  177 (328)
T 4fcg_A          100 AFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASG  177 (328)
T ss_dssp             GGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred             hhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence            344677777777766554  22223566677777777766432110011234667777777765333221          


Q ss_pred             --EECCCcceEEEcceee---eeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCC
Q 014227          230 --ISASSLVSFRYSGKDI---KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELP  303 (428)
Q Consensus       230 --i~ap~L~~L~~~~~~~---~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~  303 (428)
                        -..++|+.|++.+..+   +-.+.++++|+.+++..+....+..   -+ ..+++|+.|+++.+......-. ...++
T Consensus       178 ~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~---~l-~~l~~L~~L~Ls~n~~~~~~p~~~~~l~  253 (328)
T 4fcg_A          178 EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP---AI-HHLPKLEELDLRGCTALRNYPPIFGGRA  253 (328)
T ss_dssp             CEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCG---GG-GGCTTCCEEECTTCTTCCBCCCCTTCCC
T ss_pred             hhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCch---hh-ccCCCCCEEECcCCcchhhhHHHhcCCC
Confidence              1367788887776543   2245677888888887665543221   12 6788888888877643322211 56778


Q ss_pred             CccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227          304 KLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIW  341 (428)
Q Consensus       304 ~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~  341 (428)
                      +|++|+|..+....    .+..-+..+++|+.|+|..+
T Consensus       254 ~L~~L~L~~n~~~~----~~p~~~~~l~~L~~L~L~~n  287 (328)
T 4fcg_A          254 PLKRLILKDCSNLL----TLPLDIHRLTQLEKLDLRGC  287 (328)
T ss_dssp             CCCEEECTTCTTCC----BCCTTGGGCTTCCEEECTTC
T ss_pred             CCCEEECCCCCchh----hcchhhhcCCCCCEEeCCCC
Confidence            88888884432111    11223578888888888764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.87  E-value=1.1e-08  Score=103.89  Aligned_cols=36  Identities=14%  Similarity=0.129  Sum_probs=21.3

Q ss_pred             CeeEEEEEeecCCCccchHHHHHHHHHhCCCeEEEEEeC
Q 014227           98 NINKFRIRCTLDNSHGRDITNWIYTATAKKVQNFELDFW  136 (428)
Q Consensus        98 ~l~~l~l~~~~~~~~~~~~~~wl~~~~~~~l~~L~l~~~  136 (428)
                      .++.+.+...   .-.+....|+......++++|++..+
T Consensus       113 ~L~~L~L~~~---~i~~~~~~~l~~~~~~~L~~L~L~~~  148 (592)
T 3ogk_B          113 QLKSVHFRRM---IVSDLDLDRLAKARADDLETLKLDKC  148 (592)
T ss_dssp             TCCEEEEESC---BCCHHHHHHHHHHHGGGCCEEEEESC
T ss_pred             CCCeEEeecc---EecHHHHHHHHHhccccCcEEECcCC
Confidence            3888887632   11233445565554456999988654

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.84  E-value=2e-09  Score=71.62  Aligned_cols=38  Identities=32%  Similarity=0.486  Sum_probs=33.3

Q ss_pred             cccCCCCcHHHHHHHHhcCChHHHHHHHHhhHHHhhhc
Q 014227           20 EDWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLW   57 (428)
Q Consensus        20 ~D~~s~LPd~iL~~Ils~L~~~d~~~~s~vskrWr~lw   57 (428)
                      .+.++.||+|++.+||++|+.+|+++++.|||+|+.+.
T Consensus         6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~   43 (53)
T 1fs1_A            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   43 (53)
T ss_dssp             ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred             CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            45689999999999999999999999999999999753

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.84  E-value=7.6e-10  Score=112.56  Aligned_cols=102  Identities=20%  Similarity=0.243  Sum_probs=74.6

Q ss_pred             CCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceee---EEecCCCCcceEEeeecCC-------cceEEEE
Q 014227          162 GIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSL---KVVGSSIPLKYLDIHYCYS-------MKEIEIS  231 (428)
Q Consensus       162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l---~i~~~~~~L~~L~l~~c~~-------l~~i~i~  231 (428)
                      .+++|++|+|.++.+.+..+..+..+||+|++|.|.+|..++..   .+...+++|++|++.+|..       +..+...
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            58999999999999988888887778999999999999755431   2223579999999998861       1222224


Q ss_pred             CCCcceEEEccee--ee-----eecCCCCCeeEEEEecc
Q 014227          232 ASSLVSFRYSGKD--IK-----LHVGNVPQLVDVVIHGA  263 (428)
Q Consensus       232 ap~L~~L~~~~~~--~~-----~~~~~~p~L~~l~l~~~  263 (428)
                      .++|++|++.+..  +.     .....+|+|+.+.+..+
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            6799999987664  11     11234688888888654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.73  E-value=6e-08  Score=91.91  Aligned_cols=200  Identities=14%  Similarity=0.100  Sum_probs=132.7

Q ss_pred             CCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeE--EecCCCCcceEEeeecCCcceEEE----EC
Q 014227          159 GLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLK--VVGSSIPLKYLDIHYCYSMKEIEI----SA  232 (428)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~--i~~~~~~L~~L~l~~c~~l~~i~i----~a  232 (428)
                      .+.++++|++|+|.+..+.+- ....+.++++|+.|.+.++.......  .-..+++|+.|++.++..+..+..    ..
T Consensus        95 ~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l  173 (353)
T 2z80_A           95 SFSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL  173 (353)
T ss_dssp             TTTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred             hcCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCC
Confidence            466789999999999877542 12347789999999999885332111  223568999999999864555422    24


Q ss_pred             CCcceEEEcceee----eeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC----CCCCCC
Q 014227          233 SSLVSFRYSGKDI----KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG----HWELPK  304 (428)
Q Consensus       233 p~L~~L~~~~~~~----~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~----~~~~~~  304 (428)
                      ++|+.|++.+...    +..+.++++|+++++..+....+..  .+. ..+++|+.|+++.+........    ......
T Consensus       174 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~  250 (353)
T 2z80_A          174 TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE--IFV-DVTSSVECLELRDTDLDTFHFSELSTGETNSL  250 (353)
T ss_dssp             CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHH--HHH-HHTTTEEEEEEESCBCTTCCCC------CCCC
T ss_pred             CCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchh--hhh-hhcccccEEECCCCccccccccccccccccch
Confidence            7888888876643    2346678999999998776544221  122 6789999999988754332211    344667


Q ss_pred             ccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCcC---ccCCccEEEEeee
Q 014227          305 LLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVH---LHQHLKVVELHEF  370 (428)
Q Consensus       305 L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~~---~~~~L~~v~i~~f  370 (428)
                      ++.+.+............+...+..+++|+.|++....       ... +|..   ...+|+.+.+.+-
T Consensus       251 l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-------l~~-i~~~~~~~l~~L~~L~L~~N  311 (353)
T 2z80_A          251 IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-------LKS-VPDGIFDRLTSLQKIWLHTN  311 (353)
T ss_dssp             CCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC-------CCC-CCTTTTTTCTTCCEEECCSS
T ss_pred             hhccccccccccCcchhhhHHHHhcccCCCEEECCCCC-------CCc-cCHHHHhcCCCCCEEEeeCC
Confidence            88888866543333444566678899999999997542       111 3432   2578888888863

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.65  E-value=7e-09  Score=97.38  Aligned_cols=188  Identities=16%  Similarity=0.199  Sum_probs=128.5

Q ss_pred             hCCCeEEEEEeCCCCCCCccccchhhhhccCCCCCCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCcee
Q 014227          125 AKKVQNFELDFWPPSHINDYAFPLERYNFLKRGHGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLS  204 (428)
Q Consensus       125 ~~~l~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~  204 (428)
                      -.+++.|++......     .          +|..+..+++|++|+|.+..+.  .+..-+.++++|+.|.|.+|...+.
T Consensus       103 l~~L~~L~L~~n~l~-----~----------lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~  165 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLM-----E----------LPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTE  165 (328)
T ss_dssp             GTTCSEEEEESSCCC-----C----------CCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCC
T ss_pred             CCCCCEEECCCCCcc-----c----------hhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccc
Confidence            357888888654321     2          3344567999999999998865  3333478899999999999876553


Q ss_pred             eEEe----------cCCCCcceEEeeecCCcceEE---EECCCcceEEEcceee---eeecCCCCCeeEEEEeccCcch-
Q 014227          205 LKVV----------GSSIPLKYLDIHYCYSMKEIE---ISASSLVSFRYSGKDI---KLHVGNVPQLVDVVIHGAPLFQ-  267 (428)
Q Consensus       205 l~i~----------~~~~~L~~L~l~~c~~l~~i~---i~ap~L~~L~~~~~~~---~~~~~~~p~L~~l~l~~~~~~~-  267 (428)
                      +...          ..+++|+.|++.++. +..+.   -..++|+.|++.+..+   +-.+..+++|+.+++..+.... 
T Consensus       166 ~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~  244 (328)
T 4fcg_A          166 LPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRN  244 (328)
T ss_dssp             CCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCB
T ss_pred             cChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhh
Confidence            3111          125899999999986 33331   1357999999987744   2246788999999997654432 


Q ss_pred             hhHHHhhccccCCcceeEEeeeeeeeecccC--CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEE
Q 014227          268 VRYFIGLVVCCFPQLKTLDLECCNEVFMEFG--HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIK  339 (428)
Q Consensus       268 ~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~  339 (428)
                      +.   ..+ ..+++|+.|+++.+.... .+|  ...+++|++|+|..+...    ..+..-+..+|+|+.+.+.
T Consensus       245 ~p---~~~-~~l~~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~----~~iP~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          245 YP---PIF-GGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNL----SRLPSLIAQLPANCIILVP  309 (328)
T ss_dssp             CC---CCT-TCCCCCCEEECTTCTTCC-BCCTTGGGCTTCCEEECTTCTTC----CCCCGGGGGSCTTCEEECC
T ss_pred             hH---HHh-cCCCCCCEEECCCCCchh-hcchhhhcCCCCCEEeCCCCCch----hhccHHHhhccCceEEeCC
Confidence            11   223 788999999998764322 233  677899999999543211    1234456789999998875

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.62  E-value=2.2e-09  Score=103.18  Aligned_cols=231  Identities=15%  Similarity=0.096  Sum_probs=133.9

Q ss_pred             CCCCcccceEEeeeEEee---h------HHHHHHHhcCCcccceeecccCCce----ee-EEecCCCCcceEEeeecCCc
Q 014227          160 LSGIKSLRSLCLNALKVS---G------EVLEFFIHSCPHLEHLYVANSSELL----SL-KVVGSSIPLKYLDIHYCYSM  225 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~---~------~~l~~ll~~cp~Le~L~L~~~~~~~----~l-~i~~~~~~L~~L~l~~c~~l  225 (428)
                      +..+++|++|+|.++.+.   +      ..+...+..+++|+.|.|.++....    .+ ..-..+++|++|.+.+|.- 
T Consensus        56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l-  134 (386)
T 2ca6_A           56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL-  134 (386)
T ss_dssp             TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC-
T ss_pred             HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC-
Confidence            446889999999887432   1      1244446788999999998876322    01 1112458899999988862 


Q ss_pred             ceEE---E-EC-------------CCcceEEEcceeee--------eecCCCCCeeEEEEeccCcch--hhHHHh-hccc
Q 014227          226 KEIE---I-SA-------------SSLVSFRYSGKDIK--------LHVGNVPQLVDVVIHGAPLFQ--VRYFIG-LVVC  277 (428)
Q Consensus       226 ~~i~---i-~a-------------p~L~~L~~~~~~~~--------~~~~~~p~L~~l~l~~~~~~~--~~~~~~-l~~~  277 (428)
                      ....   + .+             ++|++|.+.+..+.        -.+..+++|+.+++..+...+  +..+.. .+ .
T Consensus       135 ~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l-~  213 (386)
T 2ca6_A          135 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL-A  213 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTG-G
T ss_pred             CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHh-h
Confidence            2100   0 11             78888888766432        123467788988887776553  222222 44 7


Q ss_pred             cCCcceeEEeeeeeeee---cccC--CCCCCCccEEEEEeecCCCCchhHHHHHHHh--CCCccEEEEEEecCCCCcccc
Q 014227          278 CFPQLKTLDLECCNEVF---MEFG--HWELPKLLHLKLTITEPNCESLLGLSFVLKA--CPFLQKLVIKIWNNNRTIGEK  350 (428)
Q Consensus       278 ~~~~l~~L~l~~~~~~~---~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~--~P~L~~L~i~~~~~~~~~~~~  350 (428)
                      .+++|+.|.++.+....   ..++  ...+++|++|.|..+.........+...++.  +|+|+.|++..+.... . ..
T Consensus       214 ~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~-~-g~  291 (386)
T 2ca6_A          214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL-D-AV  291 (386)
T ss_dssp             GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH-H-HH
T ss_pred             cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH-H-HH
Confidence            88899999998775431   2223  6677889998885443222222334555554  8899999887542110 0 00


Q ss_pred             cccCCcCc---cCCccEEEEeeeeeCCchHHHHHHHHhcccccccEEEe
Q 014227          351 RHQIPVHL---HQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEKMIIK  396 (428)
Q Consensus       351 ~~~~p~~~---~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i~  396 (428)
                      .. +|..+   +.+|+.+.+.+-.-. .+...+..+.+..+.++...+.
T Consensus       292 ~~-l~~~l~~~l~~L~~L~l~~N~l~-~~~~~~~~l~~~l~~~~~~~l~  338 (386)
T 2ca6_A          292 RT-LKTVIDEKMPDLLFLELNGNRFS-EEDDVVDEIREVFSTRGRGELD  338 (386)
T ss_dssp             HH-HHHHHHHHCTTCCEEECTTSBSC-TTSHHHHHHHHHHHHHTCCEEC
T ss_pred             HH-HHHHHHhcCCCceEEEccCCcCC-cchhHHHHHHHHhhhcCcchhh
Confidence            01 33322   478888888764333 2222333333444455444443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.62  E-value=2.1e-08  Score=94.76  Aligned_cols=211  Identities=15%  Similarity=0.161  Sum_probs=107.8

Q ss_pred             CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceE--EEECCCcce
Q 014227          160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEI--EISASSLVS  237 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i--~i~ap~L~~  237 (428)
                      +.++++|++|+|.++.+.+-.-   +..++.|+.|.+.+|.....+..-..+++|+.|.+.+|.. ..+  .-..++|+.
T Consensus       106 ~~~l~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~l~~L~~  181 (347)
T 4fmz_A          106 LQNLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKV-KDVTPIANLTDLYS  181 (347)
T ss_dssp             GTTCTTCSEEECTTSCCCCCGG---GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCC-CCCGGGGGCTTCSE
T ss_pred             HcCCCcCCEEECcCCcccCchh---hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCc-CCchhhccCCCCCE
Confidence            3456777777777766543211   5667777777777775444333233456677777766652 111  113466777


Q ss_pred             EEEcceeee-e-ecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecC
Q 014227          238 FRYSGKDIK-L-HVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEP  315 (428)
Q Consensus       238 L~~~~~~~~-~-~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  315 (428)
                      |++.+.... + .+..+++|+.+.+..+...+...    + ..+++|+.|.++++...... +...+++|++|++..+..
T Consensus       182 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~----~-~~~~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l  255 (347)
T 4fmz_A          182 LSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP----V-ANMTRLNSLKIGNNKITDLS-PLANLSQLTWLEIGTNQI  255 (347)
T ss_dssp             EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG----G-GGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred             EEccCCcccccccccCCCccceeecccCCCCCCch----h-hcCCcCCEEEccCCccCCCc-chhcCCCCCEEECCCCcc
Confidence            776655331 1 14456666666665544332211    2 56667777777665332211 155566677776644322


Q ss_pred             CCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCC-cCccCCccEEEEeeeeeCCchHHHHHHHHhcccccccEE
Q 014227          316 NCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIP-VHLHQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEKMI  394 (428)
Q Consensus       316 ~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p-~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~  394 (428)
                      ..  .    ..+..+|+|+.|++....-.       . .+ -....+|+.+.+.+..-.....    ..+.+.+.|+.+.
T Consensus       256 ~~--~----~~~~~l~~L~~L~l~~n~l~-------~-~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~  317 (347)
T 4fmz_A          256 SD--I----NAVKDLTKLKMLNVGSNQIS-------D-ISVLNNLSQLNSLFLNNNQLGNEDM----EVIGGLTNLTTLF  317 (347)
T ss_dssp             CC--C----GGGTTCTTCCEEECCSSCCC-------C-CGGGGGCTTCSEEECCSSCCCGGGH----HHHHTCTTCSEEE
T ss_pred             CC--C----hhHhcCCCcCEEEccCCccC-------C-ChhhcCCCCCCEEECcCCcCCCcCh----hHhhccccCCEEE
Confidence            21  1    12456677777776543210       0 11 1123556666665533222111    1233556666666


Q ss_pred             EecC
Q 014227          395 IKPS  398 (428)
Q Consensus       395 i~~~  398 (428)
                      +...
T Consensus       318 L~~n  321 (347)
T 4fmz_A          318 LSQN  321 (347)
T ss_dssp             CCSS
T ss_pred             ccCC
Confidence            6543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.61  E-value=2.7e-08  Score=92.24  Aligned_cols=210  Identities=16%  Similarity=0.111  Sum_probs=128.5

Q ss_pred             CCCCcccceEEeeeEEeehHH-HHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceE-----EEECC
Q 014227          160 LSGIKSLRSLCLNALKVSGEV-LEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEI-----EISAS  233 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~-l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i-----~i~ap  233 (428)
                      +.++++|++|+|.+..+.... ....+.++++|+.|+|.++........-..+++|++|++.++. +..+     ....+
T Consensus        48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~  126 (306)
T 2z66_A           48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLR  126 (306)
T ss_dssp             TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCT
T ss_pred             hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhcc
Confidence            457899999999988754211 1112456899999999988643322222356889999988764 1111     11347


Q ss_pred             CcceEEEcceeee----eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEE
Q 014227          234 SLVSFRYSGKDIK----LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHL  308 (428)
Q Consensus       234 ~L~~L~~~~~~~~----~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L  308 (428)
                      +|+.|.+.+....    ..+..+++|+.+++..+...+. .....+ ..+++|+.|+++.+........ ...+++|++|
T Consensus       127 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  204 (306)
T 2z66_A          127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN-FLPDIF-TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL  204 (306)
T ss_dssp             TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG-EECSCC-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc-cchhHH-hhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEE
Confidence            8999988876442    2356788999998866544320 000233 7788999999987754433222 6677899999


Q ss_pred             EEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCc---CccCCccEEEEee--eeeCCchHHHHHHH
Q 014227          309 KLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPV---HLHQHLKVVELHE--FRWLQIDPEIAFFI  383 (428)
Q Consensus       309 ~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~---~~~~~L~~v~i~~--f~g~~~e~~~~~~l  383 (428)
                      ++..+.......    ..+..+++|+.|++....-.       ...|.   ....+|+.+.+.+  +.+......+.+++
T Consensus       205 ~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l  273 (306)
T 2z66_A          205 NMSHNNFFSLDT----FPYKCLNSLQVLDYSLNHIM-------TSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI  273 (306)
T ss_dssp             ECTTSCCSBCCS----GGGTTCTTCCEEECTTSCCC-------BCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHH
T ss_pred             ECCCCccCccCh----hhccCcccCCEeECCCCCCc-------ccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHH
Confidence            885443222111    12467899999998754211       10121   1225899999886  55554444555554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.54  E-value=6.6e-08  Score=91.26  Aligned_cols=210  Identities=14%  Similarity=0.151  Sum_probs=121.5

Q ss_pred             CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEE--EECCCcce
Q 014227          160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIE--ISASSLVS  237 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~  237 (428)
                      +.++++|++|+|.++.+.+-  . .+.++++|+.|.+.+|....... ...+++|+.|++.+|.....+.  -..++|+.
T Consensus        84 ~~~l~~L~~L~L~~n~i~~~--~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~  159 (347)
T 4fmz_A           84 LSNLVKLTNLYIGTNKITDI--S-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNY  159 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCC--G-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCE
T ss_pred             hhcCCcCCEEEccCCcccCc--h-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcE
Confidence            34567777777777665432  1 25667777777777665322111 2245677777777765333221  13467777


Q ss_pred             EEEcceeee--eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecC
Q 014227          238 FRYSGKDIK--LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEP  315 (428)
Q Consensus       238 L~~~~~~~~--~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  315 (428)
                      |.+.+....  ..+..+++|+++++..+...++..    + ..+++|+.|.++.+..... .+...+++|++|++..+..
T Consensus       160 L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~-~~l~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~l  233 (347)
T 4fmz_A          160 LTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP----L-ASLTSLHYFTAYVNQITDI-TPVANMTRLNSLKIGNNKI  233 (347)
T ss_dssp             EECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG----G-GGCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSSCC
T ss_pred             EEecCCCcCCchhhccCCCCCEEEccCCccccccc----c-cCCCccceeecccCCCCCC-chhhcCCcCCEEEccCCcc
Confidence            777665331  125567777777776655443221    2 6777788888766633221 1156677888888854422


Q ss_pred             CCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCC-cCccCCccEEEEeeeeeCCchHHHHHHHHhcccccccEE
Q 014227          316 NCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIP-VHLHQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEKMI  394 (428)
Q Consensus       316 ~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p-~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~  394 (428)
                      ..  ...    +..+|+|+.|++......       . .+ -....+|+.+.+.+..-..-  .    .+.+.+.|+.+.
T Consensus       234 ~~--~~~----~~~l~~L~~L~l~~n~l~-------~-~~~~~~l~~L~~L~l~~n~l~~~--~----~~~~l~~L~~L~  293 (347)
T 4fmz_A          234 TD--LSP----LANLSQLTWLEIGTNQIS-------D-INAVKDLTKLKMLNVGSNQISDI--S----VLNNLSQLNSLF  293 (347)
T ss_dssp             CC--CGG----GTTCTTCCEEECCSSCCC-------C-CGGGTTCTTCCEEECCSSCCCCC--G----GGGGCTTCSEEE
T ss_pred             CC--Ccc----hhcCCCCCEEECCCCccC-------C-ChhHhcCCCcCEEEccCCccCCC--h----hhcCCCCCCEEE
Confidence            22  211    678888888888654211       1 11 12346888888876432221  1    256889999999


Q ss_pred             EecCc
Q 014227          395 IKPSS  399 (428)
Q Consensus       395 i~~~~  399 (428)
                      +....
T Consensus       294 L~~n~  298 (347)
T 4fmz_A          294 LNNNQ  298 (347)
T ss_dssp             CCSSC
T ss_pred             CcCCc
Confidence            87653

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.53  E-value=1.3e-08  Score=99.97  Aligned_cols=262  Identities=14%  Similarity=0.097  Sum_probs=143.0

Q ss_pred             HHH-HHHhCCCeEEEEEeCCCCCCCccccchhhhhccCCCCCCCCCcccceEEeeeEEeehHHHHHHHhcCC----cccc
Q 014227          119 WIY-TATAKKVQNFELDFWPPSHINDYAFPLERYNFLKRGHGLSGIKSLRSLCLNALKVSGEVLEFFIHSCP----HLEH  193 (428)
Q Consensus       119 wl~-~~~~~~l~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp----~Le~  193 (428)
                      |.. ....+++++|++..+.........++..          +..+++|++|+|++..+.+..+..+...++    .|++
T Consensus        20 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~----------l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~   89 (461)
T 1z7x_W           20 WAELLPLLQQCQVVRLDDCGLTEARCKDISSA----------LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQK   89 (461)
T ss_dssp             HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHH----------HHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCE
T ss_pred             HHHHHhhcCCccEEEccCCCCCHHHHHHHHHH----------HHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeE
Confidence            444 3344689999887654321111122222          335789999999998888777777777666    6999


Q ss_pred             eeecccCCce----e-eEEecCCCCcceEEeeecCCcceEEE---------ECCCcceEEEcceeeee--------ecCC
Q 014227          194 LYVANSSELL----S-LKVVGSSIPLKYLDIHYCYSMKEIEI---------SASSLVSFRYSGKDIKL--------HVGN  251 (428)
Q Consensus       194 L~L~~~~~~~----~-l~i~~~~~~L~~L~l~~c~~l~~i~i---------~ap~L~~L~~~~~~~~~--------~~~~  251 (428)
                      |+|.+|....    . ...-..+++|++|+++++. +....+         ..++|++|++.+..+.-        .+..
T Consensus        90 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  168 (461)
T 1z7x_W           90 LSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRA  168 (461)
T ss_dssp             EECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH
T ss_pred             EEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhh
Confidence            9998886321    0 1111245788888888876 221100         12468888877664321        2334


Q ss_pred             CCCeeEEEEeccCcch--hhHHH-hhccccCCcceeEEeeeeeeeecc---cC--CCCCCCccEEEEEeecCCCCchhHH
Q 014227          252 VPQLVDVVIHGAPLFQ--VRYFI-GLVVCCFPQLKTLDLECCNEVFME---FG--HWELPKLLHLKLTITEPNCESLLGL  323 (428)
Q Consensus       252 ~p~L~~l~l~~~~~~~--~~~~~-~l~~~~~~~l~~L~l~~~~~~~~~---~~--~~~~~~L~~L~l~~~~~~~~~~~~l  323 (428)
                      +++|+++++..+...+  ...+. .+. ...++|+.|.++.+......   ++  ...+++|++|++..+.   ....++
T Consensus       169 ~~~L~~L~L~~n~i~~~~~~~l~~~l~-~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~---l~~~~~  244 (461)
T 1z7x_W          169 KPDFKELTVSNNDINEAGVRVLCQGLK-DSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK---LGDVGM  244 (461)
T ss_dssp             CTTCCEEECCSSBCHHHHHHHHHHHHH-HSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB---CHHHHH
T ss_pred             CCCCCEEECcCCCcchHHHHHHHHHHh-cCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc---CChHHH
Confidence            6778888887665443  11222 122 34568888888766443321   12  3456778888774432   222222


Q ss_pred             HHHH----HhCCCccEEEEEEecCCCCcccccccCCcC--ccCCccEEEEeeeeeCC-chHHHHHHHHhcccccccEEEe
Q 014227          324 SFVL----KACPFLQKLVIKIWNNNRTIGEKRHQIPVH--LHQHLKVVELHEFRWLQ-IDPEIAFFIFRNAKVLEKMIIK  396 (428)
Q Consensus       324 ~~lL----~~~P~L~~L~i~~~~~~~~~~~~~~~~p~~--~~~~L~~v~i~~f~g~~-~e~~~~~~ll~~a~~L~~l~i~  396 (428)
                      ..+.    ..+++|+.|++..+.-.  ...... ++..  ...+|+.+.+.+-.-.. ....+.+.+..+.+.|+.+.+.
T Consensus       245 ~~l~~~~~~~~~~L~~L~L~~n~l~--~~~~~~-l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~  321 (461)
T 1z7x_W          245 AELCPGLLHPSSRLRTLWIWECGIT--AKGCGD-LCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK  321 (461)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCC--HHHHHH-HHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             HHHHHHHhcCCCCceEEECcCCCCC--HHHHHH-HHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence            2222    25778888887643210  000000 1111  14678877776532211 1123444444455788888877


Q ss_pred             cC
Q 014227          397 PS  398 (428)
Q Consensus       397 ~~  398 (428)
                      ..
T Consensus       322 ~n  323 (461)
T 1z7x_W          322 SC  323 (461)
T ss_dssp             TS
T ss_pred             CC
Confidence            54

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.53  E-value=2.1e-07  Score=91.72  Aligned_cols=34  Identities=12%  Similarity=0.107  Sum_probs=17.7

Q ss_pred             cCCccEEEEeeeeeCCchHHHHHHHHhcccccccEEEecC
Q 014227          359 HQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEKMIIKPS  398 (428)
Q Consensus       359 ~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i~~~  398 (428)
                      ..+|+.+.+.+-.-.... .     +.+.+.|+.+.+...
T Consensus       308 l~~L~~L~L~~n~l~~~~-~-----~~~l~~L~~L~l~~n  341 (466)
T 1o6v_A          308 LKNLTYLTLYFNNISDIS-P-----VSSLTKLQRLFFYNN  341 (466)
T ss_dssp             CTTCSEEECCSSCCSCCG-G-----GGGCTTCCEEECCSS
T ss_pred             CCCCCEEECcCCcCCCch-h-----hccCccCCEeECCCC
Confidence            456666666653222111 1     356677777776543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.51  E-value=1.9e-08  Score=94.50  Aligned_cols=177  Identities=20%  Similarity=0.170  Sum_probs=111.0

Q ss_pred             CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCcee-eEEecCCCCcceEEeeecCCcce-----EEEECC
Q 014227          160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLS-LKVVGSSIPLKYLDIHYCYSMKE-----IEISAS  233 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~-l~i~~~~~~L~~L~l~~c~~l~~-----i~i~ap  233 (428)
                      ...+++|++|+|.++.+.+..+..++.+||+|++|+|.+|..... ...-..+++|++|++.+|..+..     +.-..|
T Consensus        89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~  168 (336)
T 2ast_B           89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS  168 (336)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence            345788888888888887776777788888888888888753211 11112457888888888853332     122457


Q ss_pred             CcceEEEcce-eee-----eecCCCC-CeeEEEEeccC--cchhhHHHhhccccCCcceeEEeeeee-eeecccC-CCCC
Q 014227          234 SLVSFRYSGK-DIK-----LHVGNVP-QLVDVVIHGAP--LFQVRYFIGLVVCCFPQLKTLDLECCN-EVFMEFG-HWEL  302 (428)
Q Consensus       234 ~L~~L~~~~~-~~~-----~~~~~~p-~L~~l~l~~~~--~~~~~~~~~l~~~~~~~l~~L~l~~~~-~~~~~~~-~~~~  302 (428)
                      +|++|++.++ .+.     ..+..+| +|+.+++..+.  ..+ ..+...+ ..+++|+.|+++++. ......+ ...+
T Consensus       169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~-~~l~~~~-~~~~~L~~L~l~~~~~l~~~~~~~l~~l  246 (336)
T 2ast_B          169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK-SDLSTLV-RRCPNLVHLDLSDSVMLKNDCFQEFFQL  246 (336)
T ss_dssp             TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH-HHHHHHH-HHCTTCSEEECTTCTTCCGGGGGGGGGC
T ss_pred             CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH-HHHHHHH-hhCCCCCEEeCCCCCcCCHHHHHHHhCC
Confidence            8888888766 332     2345677 88888887663  221 1111333 678888888887775 2222222 5666


Q ss_pred             CCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227          303 PKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIW  341 (428)
Q Consensus       303 ~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~  341 (428)
                      ++|++|+|..+.  .....++ ..+..+|+|+.|++.++
T Consensus       247 ~~L~~L~l~~~~--~~~~~~~-~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          247 NYLQHLSLSRCY--DIIPETL-LELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             TTCCEEECTTCT--TCCGGGG-GGGGGCTTCCEEECTTS
T ss_pred             CCCCEeeCCCCC--CCCHHHH-HHHhcCCCCCEEeccCc
Confidence            888888884432  2222222 23467888888888754

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.46  E-value=9.4e-08  Score=87.63  Aligned_cols=173  Identities=17%  Similarity=0.169  Sum_probs=92.4

Q ss_pred             CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeE--EecCCCCcceEEeeecCCcceEE----EECC
Q 014227          160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLK--VVGSSIPLKYLDIHYCYSMKEIE----ISAS  233 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~--i~~~~~~L~~L~l~~c~~l~~i~----i~ap  233 (428)
                      +..+++|++|+|.+..+.+-. ...+.++++|+.|.+.++..++.+.  .-..+++|+.|++.++. +..+.    -..+
T Consensus        52 ~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~  129 (285)
T 1ozn_A           52 FRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLA  129 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCT
T ss_pred             cccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCc
Confidence            456778888888776543211 1125667788888887775333321  11234677777777765 22221    1236


Q ss_pred             CcceEEEcceeee-e---ecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEE
Q 014227          234 SLVSFRYSGKDIK-L---HVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHL  308 (428)
Q Consensus       234 ~L~~L~~~~~~~~-~---~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L  308 (428)
                      +|+.|.+.+..+. +   .+.++++|+.+++..+....+..  ..+ ..+++|+.|+++.+........ ...+++|++|
T Consensus       130 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  206 (285)
T 1ozn_A          130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE--RAF-RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL  206 (285)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT--TTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH--HHh-cCccccCEEECCCCcccccCHhHccCcccccEe
Confidence            6777776655331 1   24456677777765544332110  112 5566777777766543322111 4556677777


Q ss_pred             EEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227          309 KLTITEPNCESLLGLSFVLKACPFLQKLVIKIW  341 (428)
Q Consensus       309 ~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~  341 (428)
                      ++..+....  .  ....+..+|+|+.|++...
T Consensus       207 ~l~~n~l~~--~--~~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          207 YLFANNLSA--L--PTEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             ECCSSCCSC--C--CHHHHTTCTTCCEEECCSS
T ss_pred             eCCCCcCCc--C--CHHHcccCcccCEEeccCC
Confidence            664432221  1  1234566777777776543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.45  E-value=1.9e-07  Score=92.05  Aligned_cols=216  Identities=15%  Similarity=0.098  Sum_probs=111.2

Q ss_pred             CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEE--EECCCcce
Q 014227          160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIE--ISASSLVS  237 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~  237 (428)
                      +.++++|++|++.++.+.+-.-   +.++++|+.|.+.+|..... .--..+++|++|++.+|. +..+.  -..++|+.
T Consensus        86 ~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~  160 (466)
T 1o6v_A           86 LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNT-ISDISALSGLTSLQQ  160 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCC-GGGTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSE
T ss_pred             hhccccCCEEECCCCccccChh---hcCCCCCCEEECCCCCCCCC-hHHcCCCCCCEEECCCCc-cCCChhhccCCcccE
Confidence            4567888888888877654321   77888888888887753222 112346788888888775 22111  12356666


Q ss_pred             EEEcceee-eeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecCC
Q 014227          238 FRYSGKDI-KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPN  316 (428)
Q Consensus       238 L~~~~~~~-~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  316 (428)
                      |.+.+... ...+.++++|+.+++..+....+.    .+ ..+++|+.|.++.+..... .+...+++|++|++..+...
T Consensus       161 L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~l-~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~  234 (466)
T 1o6v_A          161 LSFGNQVTDLKPLANLTTLERLDISSNKVSDIS----VL-AKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQLK  234 (466)
T ss_dssp             EEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG----GG-GGCTTCSEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCC
T ss_pred             eecCCcccCchhhccCCCCCEEECcCCcCCCCh----hh-ccCCCCCEEEecCCccccc-ccccccCCCCEEECCCCCcc
Confidence            66643211 123556777777777655443321    12 5666666666655532211 11344555666655332211


Q ss_pred             CCchhHHHHHHHhCCCccEEEEEEecCCCC---------------cccccccCCcCccCCccEEEEeeeeeCCchHHHHH
Q 014227          317 CESLLGLSFVLKACPFLQKLVIKIWNNNRT---------------IGEKRHQIPVHLHQHLKVVELHEFRWLQIDPEIAF  381 (428)
Q Consensus       317 ~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~---------------~~~~~~~~p~~~~~~L~~v~i~~f~g~~~e~~~~~  381 (428)
                      .  .    ..+..+|+|+.|++........               ........+-....+|+.+.+.+..-..-. .   
T Consensus       235 ~--~----~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~-~---  304 (466)
T 1o6v_A          235 D--I----GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS-P---  304 (466)
T ss_dssp             C--C----GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCG-G---
T ss_pred             c--c----hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCch-h---
Confidence            1  1    1234555555555543321000               000001011123467777777653322211 1   


Q ss_pred             HHHhcccccccEEEecC
Q 014227          382 FIFRNAKVLEKMIIKPS  398 (428)
Q Consensus       382 ~ll~~a~~L~~l~i~~~  398 (428)
                        +.+.+.|+.+.+...
T Consensus       305 --~~~l~~L~~L~L~~n  319 (466)
T 1o6v_A          305 --ISNLKNLTYLTLYFN  319 (466)
T ss_dssp             --GGGCTTCSEEECCSS
T ss_pred             --hcCCCCCCEEECcCC
Confidence              567788888877654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.45  E-value=1e-07  Score=88.48  Aligned_cols=166  Identities=13%  Similarity=0.133  Sum_probs=112.2

Q ss_pred             CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEE--EECCCcce
Q 014227          160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIE--ISASSLVS  237 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~  237 (428)
                      +..+++|+.|+|.++.+.+-.-   +.++++|+.|.+.++.. ..+..-..+++|+.|++++|. +..+.  -..++|+.
T Consensus        59 ~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~  133 (308)
T 1h6u_A           59 VQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPL-KNVSAIAGLQSIKTLDLTSTQ-ITDVTPLAGLSNLQV  133 (308)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCC-SCCGGGTTCTTCCEEECTTSC-CCCCGGGTTCTTCCE
T ss_pred             hhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCcC-CCchhhcCCCCCCEEECCCCC-CCCchhhcCCCCCCE
Confidence            4468899999999887754321   78889999999988863 222222346788889888876 23221  12478888


Q ss_pred             EEEcceeee--eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecC
Q 014227          238 FRYSGKDIK--LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEP  315 (428)
Q Consensus       238 L~~~~~~~~--~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  315 (428)
                      |.+.+....  ..+..+++|+.+++..+...++..    + ..+++|+.|.++.+..... .+...+++|++|++..+..
T Consensus       134 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~----l-~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l  207 (308)
T 1h6u_A          134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP----L-ANLSKLTTLKADDNKISDI-SPLASLPNLIEVHLKNNQI  207 (308)
T ss_dssp             EECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG----G-TTCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECTTSCC
T ss_pred             EECCCCccCcCccccCCCCccEEEccCCcCCCChh----h-cCCCCCCEEECCCCccCcC-hhhcCCCCCCEEEccCCcc
Confidence            888776442  126678889999987765554322    2 7889999999987754321 1266788999998854432


Q ss_pred             CCCchhHHHHHHHhCCCccEEEEEEec
Q 014227          316 NCESLLGLSFVLKACPFLQKLVIKIWN  342 (428)
Q Consensus       316 ~~~~~~~l~~lL~~~P~L~~L~i~~~~  342 (428)
                      ..  ...    +..+|+|+.|++....
T Consensus       208 ~~--~~~----l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          208 SD--VSP----LANTSNLFIVTLTNQT  228 (308)
T ss_dssp             CB--CGG----GTTCTTCCEEEEEEEE
T ss_pred             Cc--ccc----ccCCCCCCEEEccCCe
Confidence            22  221    6789999999998764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.45  E-value=6.5e-07  Score=84.72  Aligned_cols=170  Identities=15%  Similarity=0.167  Sum_probs=103.4

Q ss_pred             CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceee-EEecCCCCcceEEeeecCCcceEEE----ECCCcce
Q 014227          163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSL-KVVGSSIPLKYLDIHYCYSMKEIEI----SASSLVS  237 (428)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~i----~ap~L~~  237 (428)
                      +++|++|+|.+..+.+-. ...+.++++|+.|.+.++...... ..-..+++|++|+++++. +..+..    ..++|++
T Consensus        51 ~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~  128 (353)
T 2z80_A           51 TEAVKSLDLSNNRITYIS-NSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTF  128 (353)
T ss_dssp             CTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSE
T ss_pred             cccCcEEECCCCcCcccC-HHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCE
Confidence            467888888877654311 112567888888888777432210 011245778888887775 333321    2478888


Q ss_pred             EEEcceee---ee--ecCCCCCeeEEEEeccC-cchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEEEE
Q 014227          238 FRYSGKDI---KL--HVGNVPQLVDVVIHGAP-LFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKL  310 (428)
Q Consensus       238 L~~~~~~~---~~--~~~~~p~L~~l~l~~~~-~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l  310 (428)
                      |++.+...   +.  .+.++++|+.+++..+. ...+..  ..+ ..+++|+.|+++.+........ ...+++|++|++
T Consensus       129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  205 (353)
T 2z80_A          129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR--KDF-AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL  205 (353)
T ss_dssp             EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT--TTT-TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred             EECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH--HHc-cCCCCCCEEECCCCCcCccCHHHHhccccCCeecC
Confidence            88876633   11  35678889988887653 221110  122 6788999999987754433222 667788888888


Q ss_pred             EeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227          311 TITEPNCESLLGLSFVLKACPFLQKLVIKIW  341 (428)
Q Consensus       311 ~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~  341 (428)
                      ..+...  ..  ...++..+++|+.|++...
T Consensus       206 ~~n~l~--~~--~~~~~~~~~~L~~L~L~~n  232 (353)
T 2z80_A          206 HMKQHI--LL--LEIFVDVTSSVECLELRDT  232 (353)
T ss_dssp             ECSCST--TH--HHHHHHHTTTEEEEEEESC
T ss_pred             CCCccc--cc--hhhhhhhcccccEEECCCC
Confidence            654321  12  1345667899999999865

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.44  E-value=4.4e-07  Score=84.53  Aligned_cols=242  Identities=13%  Similarity=0.106  Sum_probs=148.6

Q ss_pred             chHHHHHHHHHh--CCCeEEEEEeCCCCCCCccccchhhhhccCCCCCCCCCcccceEEeeeEEeehHHHHHHHhcCCcc
Q 014227          114 RDITNWIYTATA--KKVQNFELDFWPPSHINDYAFPLERYNFLKRGHGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHL  191 (428)
Q Consensus       114 ~~~~~wl~~~~~--~~l~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~L  191 (428)
                      ..+...+.....  +++++|++......     .++...         +..+++|++|+|.+..+.+.. .  +..+++|
T Consensus        20 ~~l~~~~~~~~~~~~~L~~L~L~~n~l~-----~~~~~~---------~~~l~~L~~L~Ls~n~l~~~~-~--~~~l~~L   82 (317)
T 3o53_A           20 SSLKQALASLRQSAWNVKELDLSGNPLS-----QISAAD---------LAPFTKLELLNLSSNVLYETL-D--LESLSTL   82 (317)
T ss_dssp             TTHHHHHHHHHTTGGGCSEEECTTSCCC-----CCCHHH---------HTTCTTCCEEECTTSCCEEEE-E--ETTCTTC
T ss_pred             cchhhhHHHHhccCCCCCEEECcCCccC-----cCCHHH---------hhCCCcCCEEECCCCcCCcch-h--hhhcCCC
Confidence            345555555443  37888888554322     233222         346899999999988764321 1  7789999


Q ss_pred             cceeecccCCceeeEEecCCCCcceEEeeecCCcceEEE-ECCCcceEEEcceee----eeecCCCCCeeEEEEeccCcc
Q 014227          192 EHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEI-SASSLVSFRYSGKDI----KLHVGNVPQLVDVVIHGAPLF  266 (428)
Q Consensus       192 e~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i-~ap~L~~L~~~~~~~----~~~~~~~p~L~~l~l~~~~~~  266 (428)
                      +.|.+.++.. ..+.   ..++|+.|.+.++. +..+.. ..++|+.|.+.+..+    +..+..+++|+.+++..+...
T Consensus        83 ~~L~Ls~n~l-~~l~---~~~~L~~L~l~~n~-l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  157 (317)
T 3o53_A           83 RTLDLNNNYV-QELL---VGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID  157 (317)
T ss_dssp             CEEECCSSEE-EEEE---ECTTCCEEECCSSC-CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC
T ss_pred             CEEECcCCcc-cccc---CCCCcCEEECCCCc-cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC
Confidence            9999998852 3222   23799999999887 444433 358899999887644    234567889999999776554


Q ss_pred             hhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCC
Q 014227          267 QVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRT  346 (428)
Q Consensus       267 ~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~  346 (428)
                      .... ..+. ..+++|+.|+++.+..... .....+++|++|++..+....  .   ..-+..+++|+.|++....    
T Consensus       158 ~~~~-~~~~-~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~--l---~~~~~~l~~L~~L~L~~N~----  225 (317)
T 3o53_A          158 TVNF-AELA-ASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAF--M---GPEFQSAAGVTWISLRNNK----  225 (317)
T ss_dssp             EEEG-GGGG-GGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCE--E---CGGGGGGTTCSEEECTTSC----
T ss_pred             cccH-HHHh-hccCcCCEEECCCCcCccc-ccccccccCCEEECCCCcCCc--c---hhhhcccCcccEEECcCCc----
Confidence            3110 0223 5789999999987754332 123458899999995543222  1   1125688999999997542    


Q ss_pred             cccccccCCcC--ccCCccEEEEeeeeeCCchHHHHHHHHhcccccccEEEe
Q 014227          347 IGEKRHQIPVH--LHQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEKMIIK  396 (428)
Q Consensus       347 ~~~~~~~~p~~--~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i~  396 (428)
                         ... +|+.  ...+|+.+.+.+-.-.  . ..+...+.+.+.|+.+.+.
T Consensus       226 ---l~~-l~~~~~~l~~L~~L~l~~N~~~--~-~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          226 ---LVL-IEKALRFSQNLEHFDLRGNGFH--C-GTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             ---CCE-ECTTCCCCTTCCEEECTTCCCB--H-HHHHHHHHTCHHHHHHHHH
T ss_pred             ---ccc-hhhHhhcCCCCCEEEccCCCcc--C-cCHHHHHhccccceEEECC
Confidence               111 2322  2467888888753222  1 1233344556666655543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.43  E-value=5.5e-08  Score=102.03  Aligned_cols=67  Identities=27%  Similarity=0.184  Sum_probs=39.9

Q ss_pred             CCCCCCCcccceEEeeeEEeehHHHH-HHHhcCCcccceeecccCCceeeE--EecCCCCcceEEeeecC
Q 014227          157 GHGLSGIKSLRSLCLNALKVSGEVLE-FFIHSCPHLEHLYVANSSELLSLK--VVGSSIPLKYLDIHYCY  223 (428)
Q Consensus       157 p~~~~~~~~L~~L~L~~~~~~~~~l~-~ll~~cp~Le~L~L~~~~~~~~l~--i~~~~~~L~~L~l~~c~  223 (428)
                      |..+..+++|++|+|+++.+.+.... ..+.+|++|+.|+|.+|...+.+.  +...+++|++|+++++.
T Consensus        93 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  162 (768)
T 3rgz_A           93 VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS  162 (768)
T ss_dssp             CCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC
T ss_pred             chhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc
Confidence            34566778888888888776542111 136778888888887764322111  11234667777776664

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.42  E-value=7.2e-07  Score=85.62  Aligned_cols=166  Identities=12%  Similarity=0.128  Sum_probs=88.7

Q ss_pred             CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEEECCCcceEE
Q 014227          160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFR  239 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~  239 (428)
                      +.++++|++|+|.+..+.+-. ...+.++++|+.|.+.++.... +.+ ..+++|+.|.+.++. +..+. ..++|+.|+
T Consensus       137 ~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~-~~~-~~l~~L~~L~l~~n~-l~~~~-~~~~L~~L~  211 (390)
T 3o6n_A          137 FHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSNRLTH-VDL-SLIPSLFHANVSYNL-LSTLA-IPIAVEELD  211 (390)
T ss_dssp             TTTCTTCCEEECCSSCCCBCC-TTTTSSCTTCCEEECCSSCCSB-CCG-GGCTTCSEEECCSSC-CSEEE-CCSSCSEEE
T ss_pred             hcCCCCCcEEECCCCccCccC-hhhccCCCCCCEEECCCCcCCc-ccc-ccccccceeeccccc-ccccC-CCCcceEEE
Confidence            467888999998887654321 1235678888888888775322 221 234677777777664 33332 234666666


Q ss_pred             Ecceee-eeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEEeecCCC
Q 014227          240 YSGKDI-KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLTITEPNC  317 (428)
Q Consensus       240 ~~~~~~-~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~  317 (428)
                      +.+... .+.....++|+.+++..+...+.    ..+ ..+++|+.|+++.+........ ...+++|++|.|..+....
T Consensus       212 l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~----~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  286 (390)
T 3o6n_A          212 ASHNSINVVRGPVNVELTILKLQHNNLTDT----AWL-LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA  286 (390)
T ss_dssp             CCSSCCCEEECCCCSSCCEEECCSSCCCCC----GGG-GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE
T ss_pred             CCCCeeeeccccccccccEEECCCCCCccc----HHH-cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc
Confidence            665533 22333445666666655444332    112 5566666666665533322111 4455666666663322111


Q ss_pred             CchhHHHHHHHhCCCccEEEEEE
Q 014227          318 ESLLGLSFVLKACPFLQKLVIKI  340 (428)
Q Consensus       318 ~~~~~l~~lL~~~P~L~~L~i~~  340 (428)
                           +......+|+|+.|++..
T Consensus       287 -----~~~~~~~l~~L~~L~L~~  304 (390)
T 3o6n_A          287 -----LNLYGQPIPTLKVLDLSH  304 (390)
T ss_dssp             -----EECSSSCCTTCCEEECCS
T ss_pred             -----cCcccCCCCCCCEEECCC
Confidence                 111123456666666654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.42  E-value=2e-08  Score=96.42  Aligned_cols=181  Identities=18%  Similarity=0.142  Sum_probs=121.0

Q ss_pred             CCCcccceEEeeeEEeehH---HHHHHHhcCCcccceeecccCCcee--eEEec---CC---------CCcceEEeeecC
Q 014227          161 SGIKSLRSLCLNALKVSGE---VLEFFIHSCPHLEHLYVANSSELLS--LKVVG---SS---------IPLKYLDIHYCY  223 (428)
Q Consensus       161 ~~~~~L~~L~L~~~~~~~~---~l~~ll~~cp~Le~L~L~~~~~~~~--l~i~~---~~---------~~L~~L~l~~c~  223 (428)
                      ..+++|++|+|+++.+.+.   .+...+..|++|+.|.|.+|.....  ..+..   .+         ++|++|.+.+|.
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            4689999999999998764   3556678999999999999864210  01111   12         689999999886


Q ss_pred             Cc-ceEE------EECCCcceEEEcceeee------e---ecCCCCCeeEEEEeccCcch--hhHHHhhccccCCcceeE
Q 014227          224 SM-KEIE------ISASSLVSFRYSGKDIK------L---HVGNVPQLVDVVIHGAPLFQ--VRYFIGLVVCCFPQLKTL  285 (428)
Q Consensus       224 ~l-~~i~------i~ap~L~~L~~~~~~~~------~---~~~~~p~L~~l~l~~~~~~~--~~~~~~l~~~~~~~l~~L  285 (428)
                      -- ..+.      -..++|+.|.+.+..+.      +   .+..+++|+.+++..+...+  ...+...+ ..+++|+.|
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l-~~~~~L~~L  249 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL-KSWPNLREL  249 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG-GGCTTCCEE
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH-ccCCCcCEE
Confidence            21 1111      14579999998877443      1   45678999999998776643  12222444 788999999


Q ss_pred             Eeeeeeeeecc---cC--C--CCCCCccEEEEEeecCCCCchhHHHHHH-HhCCCccEEEEEEec
Q 014227          286 DLECCNEVFME---FG--H--WELPKLLHLKLTITEPNCESLLGLSFVL-KACPFLQKLVIKIWN  342 (428)
Q Consensus       286 ~l~~~~~~~~~---~~--~--~~~~~L~~L~l~~~~~~~~~~~~l~~lL-~~~P~L~~L~i~~~~  342 (428)
                      .++.+......   ++  .  ..+++|++|+|..+.........+...+ .++|+|+.|++....
T Consensus       250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            99887544321   12  2  4488999999955432222222355555 568999999997653

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.41  E-value=3.3e-08  Score=97.09  Aligned_cols=161  Identities=15%  Similarity=0.104  Sum_probs=90.7

Q ss_pred             CcceEEEcceee--------eeecCCCCCeeEEEEeccCcch--hhHHH-hhccccCCcceeEEeeeeeeeeccc---C-
Q 014227          234 SLVSFRYSGKDI--------KLHVGNVPQLVDVVIHGAPLFQ--VRYFI-GLVVCCFPQLKTLDLECCNEVFMEF---G-  298 (428)
Q Consensus       234 ~L~~L~~~~~~~--------~~~~~~~p~L~~l~l~~~~~~~--~~~~~-~l~~~~~~~l~~L~l~~~~~~~~~~---~-  298 (428)
                      +|++|++.+..+        +-.+..+++|+++++..+...+  ...+. .+. ...++|++|.++.+.......   + 
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~-~~~~~L~~L~L~~n~l~~~~~~~l~~  164 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL-DPQCRLEKLQLEYCSLSAASCEPLAS  164 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT-STTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHh-cCCCcceEEECCCCCCCHHHHHHHHH
Confidence            455665554432        2245688999999998776554  22222 222 456789999998775443221   2 


Q ss_pred             -CCCCCCccEEEEEeecCCCCchhHHHHHHH-hCCCccEEEEEEecCCCCcccccccCCcC--ccCCccEEEEeeeeeCC
Q 014227          299 -HWELPKLLHLKLTITEPNCESLLGLSFVLK-ACPFLQKLVIKIWNNNRTIGEKRHQIPVH--LHQHLKVVELHEFRWLQ  374 (428)
Q Consensus       299 -~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~-~~P~L~~L~i~~~~~~~~~~~~~~~~p~~--~~~~L~~v~i~~f~g~~  374 (428)
                       ...+++|++|++..+.........+...+. ..++|+.|++..+.-.. .+ ... ++..  ...+|+.+.+.+..-..
T Consensus       165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~-~~-~~~-l~~~l~~~~~L~~L~Ls~n~l~~  241 (461)
T 1z7x_W          165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS-DN-CRD-LCGIVASKASLRELALGSNKLGD  241 (461)
T ss_dssp             HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT-TH-HHH-HHHHHHHCTTCCEEECCSSBCHH
T ss_pred             HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH-HH-HHH-HHHHHHhCCCccEEeccCCcCCh
Confidence             445689999999544322112222333232 46799999986542111 00 000 1211  24789998887643221


Q ss_pred             -chHHHHHHHHhcccccccEEEecC
Q 014227          375 -IDPEIAFFIFRNAKVLEKMIIKPS  398 (428)
Q Consensus       375 -~e~~~~~~ll~~a~~L~~l~i~~~  398 (428)
                       .-..+...+..+.+.|+.+.+...
T Consensus       242 ~~~~~l~~~~~~~~~~L~~L~L~~n  266 (461)
T 1z7x_W          242 VGMAELCPGLLHPSSRLRTLWIWEC  266 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             HHHHHHHHHHhcCCCCceEEECcCC
Confidence             222334455557899999998765

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.39  E-value=9.7e-07  Score=89.04  Aligned_cols=206  Identities=17%  Similarity=0.120  Sum_probs=113.3

Q ss_pred             CCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEe---cCCCCcceEEeeecCCcceEE---EECCCc
Q 014227          162 GIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVV---GSSIPLKYLDIHYCYSMKEIE---ISASSL  235 (428)
Q Consensus       162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~---~~~~~L~~L~l~~c~~l~~i~---i~ap~L  235 (428)
                      .+++|+.|++.+..+....-   ...+|+|+.|++.++.......+.   ..+++|+.|++.+|. +..+.   -..++|
T Consensus       323 ~l~~L~~L~l~~n~~~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L  398 (570)
T 2z63_A          323 KLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQL  398 (570)
T ss_dssp             BCSSCCEEEEESCBSCCBCC---CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTC
T ss_pred             cccccCEEeCcCCccccccc---cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCc-cccccccccccCCC
Confidence            46677777777665432110   156777777777776533221111   145777777777775 22221   235777


Q ss_pred             ceEEEcceeee-----eecCCCCCeeEEEEeccCcch-hhHHHhhccccCCcceeEEeeeeeeeecccC--CCCCCCccE
Q 014227          236 VSFRYSGKDIK-----LHVGNVPQLVDVVIHGAPLFQ-VRYFIGLVVCCFPQLKTLDLECCNEVFMEFG--HWELPKLLH  307 (428)
Q Consensus       236 ~~L~~~~~~~~-----~~~~~~p~L~~l~l~~~~~~~-~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~--~~~~~~L~~  307 (428)
                      +.|.+.+....     ..+.++++|+.+++..+.... ..   ..+ ..+++|+.|.++.+......+|  ...+++|++
T Consensus       399 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~-~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~  474 (570)
T 2z63_A          399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN---GIF-NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF  474 (570)
T ss_dssp             CEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT---TTT-TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred             CEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch---hhh-hcCCcCcEEECcCCcCccccchhhhhcccCCCE
Confidence            77777765432     134567778887776554432 11   222 6678888888877654322333  666778888


Q ss_pred             EEEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCcC--ccCCccEEEEee--eeeCCchHHHH-HH
Q 014227          308 LKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVH--LHQHLKVVELHE--FRWLQIDPEIA-FF  382 (428)
Q Consensus       308 L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~~--~~~~L~~v~i~~--f~g~~~e~~~~-~~  382 (428)
                      |+|..+....  .  ....+..+|+|+.|++....-       ....|..  -..+|+.+.+.+  +.+.-....++ .+
T Consensus       475 L~l~~n~l~~--~--~~~~~~~l~~L~~L~l~~n~l-------~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~w  543 (570)
T 2z63_A          475 LDLSQCQLEQ--L--SPTAFNSLSSLQVLNMASNQL-------KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW  543 (570)
T ss_dssp             EECTTSCCCE--E--CTTTTTTCTTCCEEECCSSCC-------SCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHH
T ss_pred             EECCCCcccc--C--ChhhhhcccCCCEEeCCCCcC-------CCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHH
Confidence            8774332111  1  022345778888888865421       1101111  246778887776  44544445555 44


Q ss_pred             HHhc
Q 014227          383 IFRN  386 (428)
Q Consensus       383 ll~~  386 (428)
                      +-.+
T Consensus       544 l~~~  547 (570)
T 2z63_A          544 LNKN  547 (570)
T ss_dssp             HHHT
T ss_pred             HHhc
Confidence            4333

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.37  E-value=1.3e-07  Score=96.37  Aligned_cols=97  Identities=16%  Similarity=0.173  Sum_probs=48.4

Q ss_pred             CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEE------EECC
Q 014227          160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIE------ISAS  233 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~------i~ap  233 (428)
                      +..+++|++|++.++.+..  +.. + .+|.|+.|.+.++.....+.+. .+++|+.|+++++. +..+.      ...+
T Consensus       303 l~~~~~L~~L~l~~n~l~~--lp~-~-~l~~L~~L~l~~n~~~~~~~~~-~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~  376 (606)
T 3vq2_A          303 VPKHFKWQSLSIIRCQLKQ--FPT-L-DLPFLKSLTLTMNKGSISFKKV-ALPSLSYLDLSRNA-LSFSGCCSYSDLGTN  376 (606)
T ss_dssp             CCTTCCCSEEEEESCCCSS--CCC-C-CCSSCCEEEEESCSSCEECCCC-CCTTCCEEECCSSC-EEEEEECCHHHHCCS
T ss_pred             ccccccCCEEEcccccCcc--ccc-C-CCCccceeeccCCcCccchhhc-cCCCCCEEECcCCc-cCCCcchhhhhccCC
Confidence            4456677777777766521  222 2 6667777777666544433222 34566666666554 22221      1235


Q ss_pred             CcceEEEcceee---eeecCCCCCeeEEEEec
Q 014227          234 SLVSFRYSGKDI---KLHVGNVPQLVDVVIHG  262 (428)
Q Consensus       234 ~L~~L~~~~~~~---~~~~~~~p~L~~l~l~~  262 (428)
                      +|+.|++.+...   +..+.++++|+.+++..
T Consensus       377 ~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~  408 (606)
T 3vq2_A          377 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQH  408 (606)
T ss_dssp             CCCEEECCSCSEEEECCCCTTCTTCCEEECTT
T ss_pred             cccEeECCCCccccchhhccCCCCCCeeECCC
Confidence            555555554422   11234455555555543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.37  E-value=2.3e-07  Score=85.03  Aligned_cols=204  Identities=12%  Similarity=0.073  Sum_probs=128.0

Q ss_pred             CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeE--EecCCCCcceEEeeecCCcceEEE----ECCCcc
Q 014227          163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLK--VVGSSIPLKYLDIHYCYSMKEIEI----SASSLV  236 (428)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~--i~~~~~~L~~L~l~~c~~l~~i~i----~ap~L~  236 (428)
                      .++|++|+|.+..+.+-. ...+..+++|+.|.|.++.. ..+.  .-..+++|+.|++.++..+..+..    ..++|+
T Consensus        31 ~~~l~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~  108 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVP-AASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH  108 (285)
T ss_dssp             CTTCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred             CCCceEEEeeCCcCCccC-HHHcccCCCCCEEECCCCcc-ceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCC
Confidence            579999999988764421 12367899999999998853 2221  112468899999998864444421    247899


Q ss_pred             eEEEcceeee----eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEE
Q 014227          237 SFRYSGKDIK----LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLT  311 (428)
Q Consensus       237 ~L~~~~~~~~----~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~  311 (428)
                      +|.+.+..+.    ..+.++++|+.+++..+....+..  ..+ ..+++|+.|+++.+........ ...+++|++|++.
T Consensus       109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  185 (285)
T 1ozn_A          109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD--DTF-RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH  185 (285)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             EEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH--hHh-ccCCCccEEECCCCcccccCHHHhcCccccCEEECC
Confidence            9998876442    235678899999987665443111  223 6788999999987754432222 5667889999885


Q ss_pred             eecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCC-c--CccCCccEEEEee--eeeCCchHHHHHHH
Q 014227          312 ITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIP-V--HLHQHLKVVELHE--FRWLQIDPEIAFFI  383 (428)
Q Consensus       312 ~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p-~--~~~~~L~~v~i~~--f~g~~~e~~~~~~l  383 (428)
                      .+......    ...+..+++|+.|++....-.       . .| +  ....+|+.+.+.+  +.+......+.+++
T Consensus       186 ~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~-------~-~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l  250 (285)
T 1ozn_A          186 QNRVAHVH----PHAFRDLGRLMTLYLFANNLS-------A-LPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWL  250 (285)
T ss_dssp             SSCCCEEC----TTTTTTCTTCCEEECCSSCCS-------C-CCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHH
T ss_pred             CCcccccC----HhHccCcccccEeeCCCCcCC-------c-CCHHHcccCcccCEEeccCCCccCCCCcHHHHHHH
Confidence            54322211    233567889999988754211       1 12 1  1246788888876  44444444455544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.37  E-value=2.6e-07  Score=85.77  Aligned_cols=186  Identities=13%  Similarity=0.099  Sum_probs=126.7

Q ss_pred             CCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEE--EECCCcceEE
Q 014227          162 GIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIE--ISASSLVSFR  239 (428)
Q Consensus       162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~L~  239 (428)
                      .+++|+.|++.++.+.+-  . -+..+++|+.|.+.+|....... -..+++|+.|++.++. +..+.  -..++|+.|.
T Consensus        39 ~l~~L~~L~l~~~~i~~l--~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~  113 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTI--E-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLD  113 (308)
T ss_dssp             HHHTCCEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEE
T ss_pred             HcCCcCEEEeeCCCccCc--h-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEE
Confidence            478999999998876542  1 26789999999999986433222 3456899999999886 33332  1247899999


Q ss_pred             Ecceeee--eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecCCC
Q 014227          240 YSGKDIK--LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNC  317 (428)
Q Consensus       240 ~~~~~~~--~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  317 (428)
                      +.+....  -.+..+++|+.+++..+....+..    + ..+++|+.|.++.+..... .+...+++|++|++..+....
T Consensus       114 l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~----l-~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~  187 (308)
T 1h6u_A          114 LTSTQITDVTPLAGLSNLQVLYLDLNQITNISP----L-AGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLKADDNKISD  187 (308)
T ss_dssp             CTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG----G-GGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCC
T ss_pred             CCCCCCCCchhhcCCCCCCEEECCCCccCcCcc----c-cCCCCccEEEccCCcCCCC-hhhcCCCCCCEEECCCCccCc
Confidence            8877542  136788999999998776554322    3 7889999999988754331 126778899999995543322


Q ss_pred             CchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCcCccCCccEEEEeeee
Q 014227          318 ESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVHLHQHLKVVELHEFR  371 (428)
Q Consensus       318 ~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~~~~~~L~~v~i~~f~  371 (428)
                        ...    +..+|+|+.|++....-.       ...+-....+|+.+.+.+-.
T Consensus       188 --~~~----l~~l~~L~~L~L~~N~l~-------~~~~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          188 --ISP----LASLPNLIEVHLKNNQIS-------DVSPLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             --CGG----GGGCTTCCEEECTTSCCC-------BCGGGTTCTTCCEEEEEEEE
T ss_pred             --Chh----hcCCCCCCEEEccCCccC-------ccccccCCCCCCEEEccCCe
Confidence              221    688999999999754211       10111235678888887633

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.35  E-value=1e-07  Score=93.58  Aligned_cols=13  Identities=23%  Similarity=0.197  Sum_probs=5.6

Q ss_pred             CCcccceEEeeeE
Q 014227          162 GIKSLRSLCLNAL  174 (428)
Q Consensus       162 ~~~~L~~L~L~~~  174 (428)
                      ++++|+.|+|.+.
T Consensus        97 ~l~~L~~L~Ls~n  109 (452)
T 3zyi_A           97 HLHHLEVLQLGRN  109 (452)
T ss_dssp             TCTTCCEEECCSS
T ss_pred             CCCCCCEEECCCC
Confidence            3444444444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.35  E-value=1.1e-07  Score=92.91  Aligned_cols=11  Identities=9%  Similarity=0.310  Sum_probs=4.5

Q ss_pred             hCCCccEEEEE
Q 014227          329 ACPFLQKLVIK  339 (428)
Q Consensus       329 ~~P~L~~L~i~  339 (428)
                      .+++|+.|+++
T Consensus       277 ~l~~L~~L~L~  287 (440)
T 3zyj_A          277 PLHHLERIHLH  287 (440)
T ss_dssp             SCTTCCEEECC
T ss_pred             cccCCCEEEcC
Confidence            33444444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.34  E-value=9.4e-07  Score=89.86  Aligned_cols=171  Identities=13%  Similarity=0.118  Sum_probs=88.2

Q ss_pred             CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCC---------------
Q 014227          160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYS---------------  224 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~---------------  224 (428)
                      +.++++|++|+|.++.+.+-. ...+.++++|+.|.|.++.... +.+ ..+++|+.|.+.++..               
T Consensus       143 ~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~-~~~-~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls  219 (597)
T 3oja_B          143 FHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSNRLTH-VDL-SLIPSLFHANVSYNLLSTLAIPIAVEELDAS  219 (597)
T ss_dssp             TTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECTTSCCSB-CCG-GGCTTCSEEECCSSCCSEEECCTTCSEEECC
T ss_pred             hccCCCCCEEEeeCCcCCCCC-hhhhhcCCcCcEEECcCCCCCC-cCh-hhhhhhhhhhcccCccccccCCchhheeecc
Confidence            356778888888777654311 1125667777777777764221 111 1234455554444320               


Q ss_pred             ---cceEEE-ECCCcceEEEcceee--eeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC
Q 014227          225 ---MKEIEI-SASSLVSFRYSGKDI--KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG  298 (428)
Q Consensus       225 ---l~~i~i-~ap~L~~L~~~~~~~--~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~  298 (428)
                         +..+.. ..++|+.|.+.+..+  ...+..+++|+.+++..+.......  ..+ ..+++|+.|.++++........
T Consensus       220 ~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~--~~~-~~l~~L~~L~Ls~N~l~~l~~~  296 (597)
T 3oja_B          220 HNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMY--HPF-VKMQRLERLYISNNRLVALNLY  296 (597)
T ss_dssp             SSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEES--GGG-TTCSSCCEEECTTSCCCEEECS
T ss_pred             CCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCH--HHh-cCccCCCEEECCCCCCCCCCcc
Confidence               122211 124556665554432  1234566677777776554432100  112 5677777777766644332222


Q ss_pred             CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227          299 HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIW  341 (428)
Q Consensus       299 ~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~  341 (428)
                      ...+++|+.|+|..+....     +..-+..+|+|+.|++...
T Consensus       297 ~~~l~~L~~L~Ls~N~l~~-----i~~~~~~l~~L~~L~L~~N  334 (597)
T 3oja_B          297 GQPIPTLKVLDLSHNHLLH-----VERNQPQFDRLENLYLDHN  334 (597)
T ss_dssp             SSCCTTCCEEECCSSCCCC-----CGGGHHHHTTCSEEECCSS
T ss_pred             cccCCCCcEEECCCCCCCc-----cCcccccCCCCCEEECCCC
Confidence            4556778888775443221     1222356677777777653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.33  E-value=3.2e-07  Score=89.62  Aligned_cols=206  Identities=14%  Similarity=0.074  Sum_probs=127.4

Q ss_pred             CCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeE-EecCCCCcceEEeeecCCcceEEE----ECC
Q 014227          159 GLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLK-VVGSSIPLKYLDIHYCYSMKEIEI----SAS  233 (428)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~-i~~~~~~L~~L~l~~c~~l~~i~i----~ap  233 (428)
                      .+.++++|++|+|.+..+.+-.. ..+.++++|+.|+|.++....... .-..+++|+.|+++++. +..+.-    ..+
T Consensus        83 ~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~  160 (440)
T 3zyj_A           83 SFKHLRHLEILQLSRNHIRTIEI-GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIP  160 (440)
T ss_dssp             TTSSCSSCCEEECCSSCCCEECG-GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCT
T ss_pred             HhhCCCCCCEEECCCCcCCccCh-hhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCc
Confidence            45678999999999886543211 236788999999998875322110 11245789999998876 444322    247


Q ss_pred             CcceEEEcce-ee----eeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccE
Q 014227          234 SLVSFRYSGK-DI----KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLH  307 (428)
Q Consensus       234 ~L~~L~~~~~-~~----~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~  307 (428)
                      +|+.|++.+. ..    ...+.++++|+.+++..+....+..    + ..+++|+.|+++.+........ +..+++|++
T Consensus       161 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~----~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  235 (440)
T 3zyj_A          161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN----L-TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK  235 (440)
T ss_dssp             TCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC----C-TTCSSCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             ccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc----c-CCCcccCEEECCCCccCccChhhhccCccCCE
Confidence            8888888763 11    1235678889999887665543221    2 6788999999987754433222 677888999


Q ss_pred             EEEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCcC---ccCCccEEEEee--eeeCCchHHHHHH
Q 014227          308 LKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVH---LHQHLKVVELHE--FRWLQIDPEIAFF  382 (428)
Q Consensus       308 L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~~---~~~~L~~v~i~~--f~g~~~e~~~~~~  382 (428)
                      |.|..+......    ...+..+++|+.|++....       ... .|..   ...+|+.+.+.+  +.+...-..+..+
T Consensus       236 L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~-------l~~-~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~  303 (440)
T 3zyj_A          236 LWMIQSQIQVIE----RNAFDNLQSLVEINLAHNN-------LTL-LPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWW  303 (440)
T ss_dssp             EECTTCCCCEEC----TTSSTTCTTCCEEECTTSC-------CCC-CCTTTTSSCTTCCEEECCSSCEECSSTTHHHHHH
T ss_pred             EECCCCceeEEC----hhhhcCCCCCCEEECCCCC-------CCc-cChhHhccccCCCEEEcCCCCccCCCCchHHHHH
Confidence            988443222211    2335678999999986532       111 2221   247888888886  4444333344444


Q ss_pred             H
Q 014227          383 I  383 (428)
Q Consensus       383 l  383 (428)
                      +
T Consensus       304 ~  304 (440)
T 3zyj_A          304 I  304 (440)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.32  E-value=1.1e-06  Score=84.26  Aligned_cols=142  Identities=15%  Similarity=0.105  Sum_probs=58.4

Q ss_pred             CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceee-EEecCCCCcceEEeeecCCcceEEE-ECCCcce
Q 014227          160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSL-KVVGSSIPLKYLDIHYCYSMKEIEI-SASSLVS  237 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~i-~ap~L~~  237 (428)
                      +.++++|++|+|.+..+..- ...++.++++|+.|.+.++...... ..-..+++|+.|++.++. +..+.+ ..|+|+.
T Consensus       113 ~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~L~~  190 (390)
T 3o6n_A          113 FQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDLSLIPSLFH  190 (390)
T ss_dssp             TTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCCGGGCTTCSE
T ss_pred             hcCCCCCCEEECCCCccCcC-CHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccccccccccce
Confidence            34555555555555544311 0112345555555555555321110 001123455555555544 222211 1245555


Q ss_pred             EEEcceeeeeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEE
Q 014227          238 FRYSGKDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLT  311 (428)
Q Consensus       238 L~~~~~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  311 (428)
                      +.+.+.... .+...++|+++++.......      +.....++|+.|.++.+..... .....+++|++|++.
T Consensus       191 L~l~~n~l~-~~~~~~~L~~L~l~~n~l~~------~~~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls  256 (390)
T 3o6n_A          191 ANVSYNLLS-TLAIPIAVEELDASHNSINV------VRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLS  256 (390)
T ss_dssp             EECCSSCCS-EEECCSSCSEEECCSSCCCE------EECCCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECC
T ss_pred             eeccccccc-ccCCCCcceEEECCCCeeee------ccccccccccEEECCCCCCccc-HHHcCCCCccEEECC
Confidence            555444221 11223345555554433221      1102234555555554432211 113445555555553

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.32  E-value=5.1e-07  Score=89.13  Aligned_cols=217  Identities=16%  Similarity=0.044  Sum_probs=121.1

Q ss_pred             CCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceee-EEecCCCCcceEEeeecCCcceEE----EECC
Q 014227          159 GLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSL-KVVGSSIPLKYLDIHYCYSMKEIE----ISAS  233 (428)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~----i~ap  233 (428)
                      .+.++++|++|+|.+..+.+-. ...+.++++|+.|.|.++...... .+-..+++|+.|++.++. +..+.    -..+
T Consensus        51 ~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~  128 (477)
T 2id5_A           51 EFASFPHLEELELNENIVSAVE-PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLY  128 (477)
T ss_dssp             TTTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSC-CCEECTTTTTTCT
T ss_pred             HccCCCCCCEEECCCCccCEeC-hhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCc-cccCChhHccccc
Confidence            4567888888888877654311 112667888888888776532110 111245778888887775 23221    1246


Q ss_pred             CcceEEEcceeee----eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeeccc-CCCCCCCccEE
Q 014227          234 SLVSFRYSGKDIK----LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEF-GHWELPKLLHL  308 (428)
Q Consensus       234 ~L~~L~~~~~~~~----~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~-~~~~~~~L~~L  308 (428)
                      +|+.|.+.+....    ..+.++++|+++++..+....+..  ..+ ..+++|+.|.++.+....... ....+++|++|
T Consensus       129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~l-~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L  205 (477)
T 2id5_A          129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT--EAL-SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL  205 (477)
T ss_dssp             TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH--HHH-TTCTTCCEEEEESCCCCEECTTCSCSCTTCCEE
T ss_pred             cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh--hHh-cccCCCcEEeCCCCcCcEeChhhcccCccccee
Confidence            7888887765331    245677888888887665443211  112 677888888887764433222 15667788888


Q ss_pred             EEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCc---CccCCccEEEEeeee--eCCchHHHHHHH
Q 014227          309 KLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPV---HLHQHLKVVELHEFR--WLQIDPEIAFFI  383 (428)
Q Consensus       309 ~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~---~~~~~L~~v~i~~f~--g~~~e~~~~~~l  383 (428)
                      ++..+.... ..   ..-.-..++|+.|++....-       .. .|.   .-..+|+.+.+.+-.  +...      ..
T Consensus       206 ~l~~~~~~~-~~---~~~~~~~~~L~~L~l~~n~l-------~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~  267 (477)
T 2id5_A          206 EISHWPYLD-TM---TPNCLYGLNLTSLSITHCNL-------TA-VPYLAVRHLVYLRFLNLSYNPISTIEG------SM  267 (477)
T ss_dssp             EEECCTTCC-EE---CTTTTTTCCCSEEEEESSCC-------CS-CCHHHHTTCTTCCEEECCSSCCCEECT------TS
T ss_pred             eCCCCcccc-cc---CcccccCccccEEECcCCcc-------cc-cCHHHhcCccccCeeECCCCcCCccCh------hh
Confidence            885432111 00   01111334788888875421       11 221   124677777776422  1111      12


Q ss_pred             HhcccccccEEEecC
Q 014227          384 FRNAKVLEKMIIKPS  398 (428)
Q Consensus       384 l~~a~~L~~l~i~~~  398 (428)
                      +.+.+.|+.+.+...
T Consensus       268 ~~~l~~L~~L~L~~n  282 (477)
T 2id5_A          268 LHELLRLQEIQLVGG  282 (477)
T ss_dssp             CTTCTTCCEEECCSS
T ss_pred             ccccccCCEEECCCC
Confidence            356778888877643

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.31  E-value=1.6e-06  Score=86.99  Aligned_cols=223  Identities=15%  Similarity=0.074  Sum_probs=120.6

Q ss_pred             CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceee-EEecCCCCcceEEeeecCCcceEE----EECCCcce
Q 014227          163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSL-KVVGSSIPLKYLDIHYCYSMKEIE----ISASSLVS  237 (428)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~----i~ap~L~~  237 (428)
                      +++|++|+|.+..+.+-. ...+.++++|++|.+.++...+.. ..-..+++|+.|+++++. +..+.    -..++|++
T Consensus        25 ~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~  102 (549)
T 2z81_A           25 TAAMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKY  102 (549)
T ss_dssp             CTTCCEEECCSSCCCEEC-SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCE
T ss_pred             CCCccEEECcCCccCccC-hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcE
Confidence            367777777777643211 112567777888887777532211 011245677777777765 22221    12467788


Q ss_pred             EEEcceeee-----eecCCCCCeeEEEEeccCc-chhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEEEE
Q 014227          238 FRYSGKDIK-----LHVGNVPQLVDVVIHGAPL-FQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKL  310 (428)
Q Consensus       238 L~~~~~~~~-----~~~~~~p~L~~l~l~~~~~-~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l  310 (428)
                      |++.+....     -.+.++++|+.+++..+.. ..+..  ..+ ..+++|+.|+++.+........ ...+++|++|.+
T Consensus       103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~--~~~-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  179 (549)
T 2z81_A          103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR--IDF-AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL  179 (549)
T ss_dssp             EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT--TTT-TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred             EECCCCcccccchhhhhhccCCccEEECCCCccccccCH--hhh-hcccccCeeeccCCcccccChhhhhccccCceEec
Confidence            877765331     2466788888888876542 21110  122 6788999999987754432222 666788888888


Q ss_pred             EeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCcCccCCccEEEEeeeeeCCchHHHHHHHHhccccc
Q 014227          311 TITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVHLHQHLKVVELHEFRWLQIDPEIAFFIFRNAKVL  390 (428)
Q Consensus       311 ~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L  390 (428)
                      ..+....  .  ...++..+++|+.|++............ . .......+|+.+.+.+-.-......-+...+.+.+.|
T Consensus       180 ~~n~~~~--~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L  253 (549)
T 2z81_A          180 HLSESAF--L--LEIFADILSSVRYLELRDTNLARFQFSP-L-PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL  253 (549)
T ss_dssp             ECSBSTT--H--HHHHHHSTTTBSEEEEESCBCTTCCCCC-C-SSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC
T ss_pred             ccCcccc--c--chhhHhhcccccEEEccCCccccccccc-c-chhhhhhcccceeccccccchhHHHHHHHHhhhhccc
Confidence            6543221  1  1334567899999999864311100000 0 0011245667766665433222222222233444555


Q ss_pred             ccEEEe
Q 014227          391 EKMIIK  396 (428)
Q Consensus       391 ~~l~i~  396 (428)
                      +.+.+.
T Consensus       254 ~~l~l~  259 (549)
T 2z81_A          254 SEVEFD  259 (549)
T ss_dssp             CEEEEE
T ss_pred             cccccc
Confidence            555443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.31  E-value=2.7e-07  Score=90.53  Aligned_cols=82  Identities=16%  Similarity=0.058  Sum_probs=36.0

Q ss_pred             CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEE--ecCCCCcceEEeeecCCcceEEE----ECC
Q 014227          160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKV--VGSSIPLKYLDIHYCYSMKEIEI----SAS  233 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~i----~ap  233 (428)
                      +.++++|++|+|.+..+..-. ...+.++++|+.|.|.++.... +.-  -..+++|+.|++.+|..++.+..    ..+
T Consensus       119 ~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~  196 (452)
T 3zyi_A          119 FNGLASLNTLELFDNWLTVIP-SGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF  196 (452)
T ss_dssp             TTTCTTCCEEECCSSCCSBCC-TTTSSSCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCT
T ss_pred             ccCcccCCEEECCCCcCCccC-hhhhcccCCCCEEECCCCCcce-eCHhHHhcCCcccEEeCCCCCCccccChhhccCCC
Confidence            445556666666555433210 1123445556666665554211 100  01235555555555544443322    124


Q ss_pred             CcceEEEcce
Q 014227          234 SLVSFRYSGK  243 (428)
Q Consensus       234 ~L~~L~~~~~  243 (428)
                      +|+.|++.+.
T Consensus       197 ~L~~L~L~~n  206 (452)
T 3zyi_A          197 NLKYLNLGMC  206 (452)
T ss_dssp             TCCEEECTTS
T ss_pred             CCCEEECCCC
Confidence            4555554443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.30  E-value=6.7e-07  Score=83.32  Aligned_cols=212  Identities=15%  Similarity=0.127  Sum_probs=141.4

Q ss_pred             CCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEEECCCcceEEEc
Q 014227          162 GIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRYS  241 (428)
Q Consensus       162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~  241 (428)
                      .+++|++|+|.+..+.+-. ...+.++++|+.|.|.++...+...+ ..+++|+.|+++++. +..+. ..++|+.|.+.
T Consensus        32 ~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~l~~L~~L~Ls~n~-l~~l~-~~~~L~~L~l~  107 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYETLDL-ESLSTLRTLDLNNNY-VQELL-VGPSIETLHAA  107 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCC-HHHHTTCTTCCEEECTTSCCEEEEEE-TTCTTCCEEECCSSE-EEEEE-ECTTCCEEECC
T ss_pred             cCCCCCEEECcCCccCcCC-HHHhhCCCcCCEEECCCCcCCcchhh-hhcCCCCEEECcCCc-ccccc-CCCCcCEEECC
Confidence            4789999999999876532 23478999999999999875544443 456899999999886 55554 45899999998


Q ss_pred             ceee-eeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC--CCCCCCccEEEEEeecCCCC
Q 014227          242 GKDI-KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG--HWELPKLLHLKLTITEPNCE  318 (428)
Q Consensus       242 ~~~~-~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~  318 (428)
                      +..+ .+....+++|+.+++..+....+..  ..+ ..+++|+.|+++.+........  ...+++|++|++..+.... 
T Consensus       108 ~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~--~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-  183 (317)
T 3o53_A          108 NNNISRVSCSRGQGKKNIYLANNKITMLRD--LDE-GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-  183 (317)
T ss_dssp             SSCCSEEEECCCSSCEEEECCSSCCCSGGG--BCT-GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-
T ss_pred             CCccCCcCccccCCCCEEECCCCCCCCccc--hhh-hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-
Confidence            8755 4555678999999998776554211  122 6789999999988755443322  3467899999995443222 


Q ss_pred             chhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCc--CccCCccEEEEeeeeeCCchHHHHHHHHhcccccccEEEe
Q 014227          319 SLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPV--HLHQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEKMIIK  396 (428)
Q Consensus       319 ~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~--~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i~  396 (428)
                       ...    ...+++|+.|+++...-       .. .|+  ....+|+.+.+.+-.-..     +-..+.+.+.|+.+.+.
T Consensus       184 -~~~----~~~l~~L~~L~Ls~N~l-------~~-l~~~~~~l~~L~~L~L~~N~l~~-----l~~~~~~l~~L~~L~l~  245 (317)
T 3o53_A          184 -VKG----QVVFAKLKTLDLSSNKL-------AF-MGPEFQSAAGVTWISLRNNKLVL-----IEKALRFSQNLEHFDLR  245 (317)
T ss_dssp             -EEC----CCCCTTCCEEECCSSCC-------CE-ECGGGGGGTTCSEEECTTSCCCE-----ECTTCCCCTTCCEEECT
T ss_pred             -ccc----ccccccCCEEECCCCcC-------Cc-chhhhcccCcccEEECcCCcccc-----hhhHhhcCCCCCEEEcc
Confidence             111    12489999999975421       11 121  124678888876522110     00113577899999887


Q ss_pred             cCc
Q 014227          397 PSS  399 (428)
Q Consensus       397 ~~~  399 (428)
                      ..+
T Consensus       246 ~N~  248 (317)
T 3o53_A          246 GNG  248 (317)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            553

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.29  E-value=1e-06  Score=86.34  Aligned_cols=65  Identities=20%  Similarity=0.278  Sum_probs=35.9

Q ss_pred             CCCCCcccceEEeeeEEeehHHHH-HHHhcCCcccceeecccCCceeeE--EecCCCCcceEEeeecC
Q 014227          159 GLSGIKSLRSLCLNALKVSGEVLE-FFIHSCPHLEHLYVANSSELLSLK--VVGSSIPLKYLDIHYCY  223 (428)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~l~-~ll~~cp~Le~L~L~~~~~~~~l~--i~~~~~~L~~L~l~~c~  223 (428)
                      .+.++++|++|+|.++.+.+..+. ..+.++++|+.|.|.++.......  +-..+++|+.|++.++.
T Consensus        98 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~  165 (455)
T 3v47_A           98 AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK  165 (455)
T ss_dssp             TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred             hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence            455667777777777766543222 235566777777776665322111  11234666666666553

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.28  E-value=5e-07  Score=89.45  Aligned_cols=185  Identities=15%  Similarity=0.137  Sum_probs=124.1

Q ss_pred             CCeEEEEEeCCCCCCCccccchhhhhccCCCCCCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeE
Q 014227          127 KVQNFELDFWPPSHINDYAFPLERYNFLKRGHGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLK  206 (428)
Q Consensus       127 ~l~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~  206 (428)
                      +++.|++......     .++..         .+..+++|++|+|+++.+.+.. .  +.++++|+.|+|.+|. ++.+.
T Consensus        35 ~L~~L~Ls~n~l~-----~~~~~---------~~~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N~-l~~l~   96 (487)
T 3oja_A           35 NVKELDLSGNPLS-----QISAA---------DLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNY-VQELL   96 (487)
T ss_dssp             GCCEEECCSSCCC-----CCCGG---------GGTTCTTCCEEECTTSCCEEEE-E--CTTCTTCCEEECCSSE-EEEEE
T ss_pred             CccEEEeeCCcCC-----CCCHH---------HHhCCCCCCEEEeeCCCCCCCc-c--cccCCCCCEEEecCCc-CCCCC
Confidence            7888888654432     22222         2457899999999988765321 1  7889999999999885 33222


Q ss_pred             EecCCCCcceEEeeecCCcceEE-EECCCcceEEEcceee----eeecCCCCCeeEEEEeccCcchhhHHHhhccccCCc
Q 014227          207 VVGSSIPLKYLDIHYCYSMKEIE-ISASSLVSFRYSGKDI----KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQ  281 (428)
Q Consensus       207 i~~~~~~L~~L~l~~c~~l~~i~-i~ap~L~~L~~~~~~~----~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~  281 (428)
                         ..++|+.|++++|. +..+. -..|+|+.|.+.+..+    +..+..+++|+.+++..+....... ..+. ..+++
T Consensus        97 ---~~~~L~~L~L~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~-~~l~~  170 (487)
T 3oja_A           97 ---VGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-AELA-ASSDT  170 (487)
T ss_dssp             ---ECTTCCEEECCSSC-CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG-GGGG-GGTTT
T ss_pred             ---CCCCcCEEECcCCc-CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh-HHHh-hhCCc
Confidence               22799999999887 34333 3358899999887643    2356678999999997766543110 0222 57899


Q ss_pred             ceeEEeeeeeeeecccCCCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227          282 LKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIW  341 (428)
Q Consensus       282 l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~  341 (428)
                      |+.|+++.+..... .+...+++|+.|+|+.+....  .   ..-+..+|+|+.|++...
T Consensus       171 L~~L~Ls~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~--~---~~~~~~l~~L~~L~Ls~N  224 (487)
T 3oja_A          171 LEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAF--M---GPEFQSAAGVTWISLRNN  224 (487)
T ss_dssp             CCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCE--E---CGGGGGGTTCSEEECTTS
T ss_pred             ccEEecCCCccccc-cccccCCCCCEEECCCCCCCC--C---CHhHcCCCCccEEEecCC
Confidence            99999988754332 224458899999996543222  1   112568899999999754

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.27  E-value=7.3e-07  Score=87.52  Aligned_cols=159  Identities=17%  Similarity=0.127  Sum_probs=74.9

Q ss_pred             CCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEE-ECCCcceEE
Q 014227          161 SGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEI-SASSLVSFR  239 (428)
Q Consensus       161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i-~ap~L~~L~  239 (428)
                      ..+++|++|+|.+..+.+-.    +.++++|+.|.+.++... .+.+ ..+++|+.|.+.++. +..+.+ ..++|+.|.
T Consensus        82 ~~l~~L~~L~Ls~N~l~~~~----~~~l~~L~~L~L~~N~l~-~l~~-~~l~~L~~L~l~~N~-l~~l~l~~l~~L~~L~  154 (457)
T 3bz5_A           82 SQNTNLTYLACDSNKLTNLD----VTPLTKLTYLNCDTNKLT-KLDV-SQNPLLTYLNCARNT-LTEIDVSHNTQLTELD  154 (457)
T ss_dssp             TTCTTCSEEECCSSCCSCCC----CTTCTTCCEEECCSSCCS-CCCC-TTCTTCCEEECTTSC-CSCCCCTTCTTCCEEE
T ss_pred             ccCCCCCEEECcCCCCceee----cCCCCcCCEEECCCCcCC-eecC-CCCCcCCEEECCCCc-cceeccccCCcCCEEE
Confidence            34555555555555443321    444555555555554321 1221 233455555555543 222221 134555555


Q ss_pred             Ecce-ee-eeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecCCC
Q 014227          240 YSGK-DI-KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNC  317 (428)
Q Consensus       240 ~~~~-~~-~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  317 (428)
                      +.+. .. .+.+..+++|+.+++..+....+.     + ..+++|+.|.++.+.....  +...+++|+.|++..+....
T Consensus       155 l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~-----l-~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~  226 (457)
T 3bz5_A          155 CHLNKKITKLDVTPQTQLTTLDCSFNKITELD-----V-SQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTE  226 (457)
T ss_dssp             CTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC-----C-TTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSC
T ss_pred             CCCCCcccccccccCCcCCEEECCCCccceec-----c-ccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccc
Confidence            5444 11 223445555666555544333211     1 5566666666655533221  35556667777664432221


Q ss_pred             CchhHHHHHHHhCCCccEEEEEEe
Q 014227          318 ESLLGLSFVLKACPFLQKLVIKIW  341 (428)
Q Consensus       318 ~~~~~l~~lL~~~P~L~~L~i~~~  341 (428)
                        .   .  +..+|+|+.|++...
T Consensus       227 --i---p--~~~l~~L~~L~l~~N  243 (457)
T 3bz5_A          227 --I---D--VTPLTQLTYFDCSVN  243 (457)
T ss_dssp             --C---C--CTTCTTCSEEECCSS
T ss_pred             --c---C--ccccCCCCEEEeeCC
Confidence              1   1  456677777777543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.26  E-value=1.1e-06  Score=86.99  Aligned_cols=164  Identities=18%  Similarity=0.155  Sum_probs=96.7

Q ss_pred             CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceE---E-EECCCc
Q 014227          160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEI---E-ISASSL  235 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i---~-i~ap~L  235 (428)
                      +..+++|++|+|+++.+.+      +..+|.|+.|.+.+|..... . ...+++|+.|.+.++.- ..+   . -..++|
T Consensus        76 l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L~L~~N~l~~~-~-~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L  146 (487)
T 3oja_A           76 LESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNISRV-S-CSRGQGKKNIYLANNKI-TMLRDLDEGCRSRV  146 (487)
T ss_dssp             CTTCTTCCEEECCSSEEEE------EEECTTCCEEECCSSCCCCE-E-ECCCSSCEEEECCSSCC-CSGGGBCGGGGSSE
T ss_pred             cccCCCCCEEEecCCcCCC------CCCCCCcCEEECcCCcCCCC-C-ccccCCCCEEECCCCCC-CCCCchhhcCCCCC
Confidence            3467888888888877654      33447888888887764332 1 12347788888877752 211   1 124677


Q ss_pred             ceEEEcceeee-e---ec-CCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEE
Q 014227          236 VSFRYSGKDIK-L---HV-GNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKL  310 (428)
Q Consensus       236 ~~L~~~~~~~~-~---~~-~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l  310 (428)
                      +.|++++..+. .   .+ ..+++|+.+++..+......    -. ..+++|+.|+++.+...........+++|+.|+|
T Consensus       147 ~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~----~~-~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L  221 (487)
T 3oja_A          147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK----GQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISL  221 (487)
T ss_dssp             EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE----CC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEEC
T ss_pred             CEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc----cc-ccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEe
Confidence            78877765431 1   22 25678888888666544321    11 3477888888877654332112556677888877


Q ss_pred             EeecCCCCchhHHHHHHHhCCCccEEEEEEec
Q 014227          311 TITEPNCESLLGLSFVLKACPFLQKLVIKIWN  342 (428)
Q Consensus       311 ~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~  342 (428)
                      ..+...     ++...+..+|+|+.|++...+
T Consensus       222 s~N~l~-----~lp~~l~~l~~L~~L~l~~N~  248 (487)
T 3oja_A          222 RNNKLV-----LIEKALRFSQNLEHFDLRGNG  248 (487)
T ss_dssp             TTSCCC-----EECTTCCCCTTCCEEECTTCC
T ss_pred             cCCcCc-----ccchhhccCCCCCEEEcCCCC
Confidence            443221     122234567788888876543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.26  E-value=7.2e-07  Score=88.01  Aligned_cols=176  Identities=15%  Similarity=0.086  Sum_probs=95.0

Q ss_pred             CCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeE-EecCCCCcceEEeeecCCcceEEE---ECCC
Q 014227          159 GLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLK-VVGSSIPLKYLDIHYCYSMKEIEI---SASS  234 (428)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~-i~~~~~~L~~L~l~~c~~l~~i~i---~ap~  234 (428)
                      .+.++++|++|+|.++.+.+-. ...+.++++|+.|.|.++....... .-..+++|+.|++.+|.....+..   ..++
T Consensus       147 ~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  225 (477)
T 2id5_A          147 AFSGLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN  225 (477)
T ss_dssp             SSTTCTTCCEEEEESCCCSSCC-HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred             hccCCCCCCEEECCCCcCcccC-hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence            3455666777776666554321 1235667777777776654322110 011346777777777664444321   1246


Q ss_pred             cceEEEcceeee-e---ecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEEE
Q 014227          235 LVSFRYSGKDIK-L---HVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLK  309 (428)
Q Consensus       235 L~~L~~~~~~~~-~---~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~  309 (428)
                      |+.|++.+..+. +   .+.++++|+.+++..+....+..  ..+ ..+++|+.|.++.+........ +..+++|++|+
T Consensus       226 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  302 (477)
T 2id5_A          226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG--SML-HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLN  302 (477)
T ss_dssp             CSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECT--TSC-TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEE
T ss_pred             ccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccCh--hhc-cccccCCEEECCCCccceECHHHhcCcccCCEEE
Confidence            777777665331 1   24567777777776554432110  122 5677777777766644332211 55667777777


Q ss_pred             EEeecCCCCchhHHHHHHHhCCCccEEEEEEec
Q 014227          310 LTITEPNCESLLGLSFVLKACPFLQKLVIKIWN  342 (428)
Q Consensus       310 l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~  342 (428)
                      |..+......    ...+..+++|+.|++...+
T Consensus       303 L~~N~l~~~~----~~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          303 VSGNQLTTLE----ESVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             CCSSCCSCCC----GGGBSCGGGCCEEECCSSC
T ss_pred             CCCCcCceeC----HhHcCCCcccCEEEccCCC
Confidence            7544222211    1234567777777776543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.25  E-value=2.6e-06  Score=85.55  Aligned_cols=179  Identities=14%  Similarity=0.075  Sum_probs=120.3

Q ss_pred             CCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCce--eeEEecCCCCcceEEeeecCCcceEEE----EC
Q 014227          159 GLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELL--SLKVVGSSIPLKYLDIHYCYSMKEIEI----SA  232 (428)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~--~l~i~~~~~~L~~L~l~~c~~l~~i~i----~a  232 (428)
                      .+.++++|++|+|++..+.+-. ...+.++++|+.|.+.++....  ....-..+++|+.|++.++.....+..    ..
T Consensus        69 ~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l  147 (549)
T 2z81_A           69 AFYSLGSLEHLDLSDNHLSSLS-SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL  147 (549)
T ss_dssp             TTTTCTTCCEEECTTSCCCSCC-HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred             hccccccCCEEECCCCccCccC-HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcc
Confidence            4667899999999998875432 2346889999999999886432  112223568999999999875554431    24


Q ss_pred             CCcceEEEcceee----eeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeeccc---C-CCCCCC
Q 014227          233 SSLVSFRYSGKDI----KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEF---G-HWELPK  304 (428)
Q Consensus       233 p~L~~L~~~~~~~----~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~---~-~~~~~~  304 (428)
                      ++|+.|++.+...    +..+..+++|+++++.......+..  .+. ..+++|+.|+++.+.......   + ...+++
T Consensus       148 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~--~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~  224 (549)
T 2z81_A          148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE--IFA-DILSSVRYLELRDTNLARFQFSPLPVDEVSSP  224 (549)
T ss_dssp             CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHH--HHH-HSTTTBSEEEEESCBCTTCCCCCCSSCCCCCC
T ss_pred             cccCeeeccCCcccccChhhhhccccCceEecccCcccccch--hhH-hhcccccEEEccCCccccccccccchhhhhhc
Confidence            7888888876643    2346678899999997665443222  122 678999999998875443221   1 345788


Q ss_pred             ccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227          305 LLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIW  341 (428)
Q Consensus       305 L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~  341 (428)
                      |++|.+..+.........+...+..+++|+.|.+..+
T Consensus       225 L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~  261 (549)
T 2z81_A          225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC  261 (549)
T ss_dssp             CCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred             ccceeccccccchhHHHHHHHHhhhhccccccccccc
Confidence            9999996553332333345555677888888888754

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.23  E-value=1.9e-07  Score=88.42  Aligned_cols=61  Identities=18%  Similarity=0.135  Sum_probs=42.4

Q ss_pred             CCCcccceEEeeeEEee--------hHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecC
Q 014227          161 SGIKSLRSLCLNALKVS--------GEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCY  223 (428)
Q Consensus       161 ~~~~~L~~L~L~~~~~~--------~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~  223 (428)
                      ..|++|+.|.|.++...        ..++..++..+|+|++|.|.++.+.....+.  +++|++|.+..|.
T Consensus       136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~--~~~L~~L~L~~~~  204 (362)
T 2ra8_A          136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP--RPNLKSLEIISGG  204 (362)
T ss_dssp             HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCB--CTTCSEEEEECSB
T ss_pred             hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecccc--CCCCcEEEEecCC
Confidence            35789999998765432        1247788999999999999887443322222  3778888887665

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.22  E-value=2.3e-06  Score=87.01  Aligned_cols=172  Identities=16%  Similarity=0.162  Sum_probs=105.0

Q ss_pred             CCCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeE-EecCCCCcceEEeeecCCcceEEE-ECCCc
Q 014227          158 HGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLK-VVGSSIPLKYLDIHYCYSMKEIEI-SASSL  235 (428)
Q Consensus       158 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~-i~~~~~~L~~L~l~~c~~l~~i~i-~ap~L  235 (428)
                      ..+.++++|++|+|.++.+..- ...++.++++|+.|.|.++...+... .-..+++|+.|+++++. +..+.+ ..|+|
T Consensus       117 ~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L  194 (597)
T 3oja_B          117 HVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDLSLIPSL  194 (597)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCCGGGCTTC
T ss_pred             HHHcCCCCCCEEEeeCCCCCCC-CHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcChhhhhhh
Confidence            3457899999999999976531 12236789999999999986433211 11246899999998876 222221 12445


Q ss_pred             ceEEEc-------------------ceee-eeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeec
Q 014227          236 VSFRYS-------------------GKDI-KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFM  295 (428)
Q Consensus       236 ~~L~~~-------------------~~~~-~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~  295 (428)
                      +.|.+.                   +..+ .+.....++|+.+++..+...+.    ..+ ..+++|+.|+++++.....
T Consensus       195 ~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~----~~l-~~l~~L~~L~Ls~N~l~~~  269 (597)
T 3oja_B          195 FHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT----AWL-LNYPGLVEVDLSYNELEKI  269 (597)
T ss_dssp             SEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC----GGG-GGCTTCSEEECCSSCCCEE
T ss_pred             hhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC----hhh-ccCCCCCEEECCCCccCCC
Confidence            544443                   3322 12222335666666665544332    223 7788999999987754433


Q ss_pred             ccC-CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227          296 EFG-HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIW  341 (428)
Q Consensus       296 ~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~  341 (428)
                      ... +..+++|+.|.|..+....     +......+|+|+.|++...
T Consensus       270 ~~~~~~~l~~L~~L~Ls~N~l~~-----l~~~~~~l~~L~~L~Ls~N  311 (597)
T 3oja_B          270 MYHPFVKMQRLERLYISNNRLVA-----LNLYGQPIPTLKVLDLSHN  311 (597)
T ss_dssp             ESGGGTTCSSCCEEECTTSCCCE-----EECSSSCCTTCCEEECCSS
T ss_pred             CHHHhcCccCCCEEECCCCCCCC-----CCcccccCCCCcEEECCCC
Confidence            222 6677889999884432221     1223356899999999765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.22  E-value=6.7e-07  Score=77.14  Aligned_cols=57  Identities=18%  Similarity=0.223  Sum_probs=28.0

Q ss_pred             ccCCcceeEEeeeee-eeecccCCCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEE
Q 014227          277 CCFPQLKTLDLECCN-EVFMEFGHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKI  340 (428)
Q Consensus       277 ~~~~~l~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~  340 (428)
                      ..+++|+.|.++.+. .... -+...+++|++|++..+....  .   . .+..+|+|+.|++..
T Consensus       133 ~~l~~L~~L~L~~n~~i~~~-~~l~~l~~L~~L~l~~n~i~~--~---~-~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          133 NTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHD--Y---R-GIEDFPKLNQLYAFS  190 (197)
T ss_dssp             TTCSSCCEEECCSCTBCCCC-GGGGGCSSCCEEECTTBCCCC--C---T-TGGGCSSCCEEEECB
T ss_pred             hhCCCCCEEEccCCCCcccc-HhhcCCCCCCEEECCCCCCcC--h---H-HhccCCCCCEEEeeC
Confidence            455666666665553 2111 124455666666663322111  1   1 345666777666654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.20  E-value=8.5e-08  Score=97.69  Aligned_cols=107  Identities=22%  Similarity=0.243  Sum_probs=61.5

Q ss_pred             CCCCCCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEE--ecCCCCcceEEeeecCCcceEEE--
Q 014227          155 KRGHGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKV--VGSSIPLKYLDIHYCYSMKEIEI--  230 (428)
Q Consensus       155 ~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~i--  230 (428)
                      .+|..+..+++|++|+|.++.+.+.. ...+.++|.|+.|.+.++.....+..  -..+++|+.|++.++. +..+..  
T Consensus       292 ~lp~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~  369 (606)
T 3t6q_A          292 ELPSGLVGLSTLKKLVLSANKFENLC-QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCN  369 (606)
T ss_dssp             CCCSSCCSCTTCCEEECTTCCCSBGG-GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEEST
T ss_pred             CCChhhcccccCCEEECccCCcCcCc-hhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cccccCcc
Confidence            35666778889999999888765421 12366788888888887754322211  1234677777777665 233221  


Q ss_pred             ----ECCCcceEEEcceeee----eecCCCCCeeEEEEecc
Q 014227          231 ----SASSLVSFRYSGKDIK----LHVGNVPQLVDVVIHGA  263 (428)
Q Consensus       231 ----~ap~L~~L~~~~~~~~----~~~~~~p~L~~l~l~~~  263 (428)
                          ..++|+.|.+.+....    ..+..+++|+.+++..+
T Consensus       370 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  410 (606)
T 3t6q_A          370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT  410 (606)
T ss_dssp             TTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred             hhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence                2356666666554321    12345566666665443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.17  E-value=1.5e-06  Score=80.34  Aligned_cols=218  Identities=15%  Similarity=0.092  Sum_probs=136.3

Q ss_pred             CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEe---cCCCCcceEEeeecCCcceEE---EECCCcc
Q 014227          163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVV---GSSIPLKYLDIHYCYSMKEIE---ISASSLV  236 (428)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~---~~~~~L~~L~l~~c~~l~~i~---i~ap~L~  236 (428)
                      .++|++|+|.+..+.+- -..++.++++|+.|.|.++.....-.+.   ..+++|+.|+++++. +..+.   ...++|+
T Consensus        27 ~~~l~~L~L~~n~l~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~  104 (306)
T 2z66_A           27 PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLE  104 (306)
T ss_dssp             CTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCC
T ss_pred             CCCCCEEECCCCccCcc-CHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCC
Confidence            47999999999876531 1124678999999999988643211111   146899999999886 33332   2468999


Q ss_pred             eEEEcceeee-e----ecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC--CCCCCCccEEE
Q 014227          237 SFRYSGKDIK-L----HVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG--HWELPKLLHLK  309 (428)
Q Consensus       237 ~L~~~~~~~~-~----~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~--~~~~~~L~~L~  309 (428)
                      .|.+.+.... +    .+..+++|+.+++..+......  ...+ ..+++|+.|.++.+.......+  ...+++|++|+
T Consensus       105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  181 (306)
T 2z66_A          105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF--NGIF-NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD  181 (306)
T ss_dssp             EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS--TTTT-TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred             EEECCCCcccccccchhhhhccCCCEEECCCCcCCccc--hhhc-ccCcCCCEEECCCCccccccchhHHhhCcCCCEEE
Confidence            9999877542 1    3667899999999766544210  0223 7889999999988755442334  67789999999


Q ss_pred             EEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCcCccCCccEEEEeeeeeCCchHHHHHHHHhcc-c
Q 014227          310 LTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVHLHQHLKVVELHEFRWLQIDPEIAFFIFRNA-K  388 (428)
Q Consensus       310 l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a-~  388 (428)
                      +..+......    ...+..+|+|+.|++..........     .+-....+|+.+.+.+-.-......    .+.+. +
T Consensus       182 Ls~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~~~~  248 (306)
T 2z66_A          182 LSQCQLEQLS----PTAFNSLSSLQVLNMSHNNFFSLDT-----FPYKCLNSLQVLDYSLNHIMTSKKQ----ELQHFPS  248 (306)
T ss_dssp             CTTSCCCEEC----TTTTTTCTTCCEEECTTSCCSBCCS-----GGGTTCTTCCEEECTTSCCCBCSSS----SCCCCCT
T ss_pred             CCCCCcCCcC----HHHhcCCCCCCEEECCCCccCccCh-----hhccCcccCCEeECCCCCCcccCHH----HHHhhhc
Confidence            9544222111    2345788999999996542110000     0111246888888875321110000    12244 4


Q ss_pred             ccccEEEecC
Q 014227          389 VLEKMIIKPS  398 (428)
Q Consensus       389 ~L~~l~i~~~  398 (428)
                      .|+.+.+...
T Consensus       249 ~L~~L~L~~N  258 (306)
T 2z66_A          249 SLAFLNLTQN  258 (306)
T ss_dssp             TCCEEECTTC
T ss_pred             cCCEEEccCC
Confidence            7888887644

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.17  E-value=7.1e-07  Score=90.04  Aligned_cols=172  Identities=17%  Similarity=0.103  Sum_probs=88.1

Q ss_pred             CCCcceEEeeecCCcceEEE------ECCCcceEEEcceee---eeecCCCCCeeEEEEeccCcchhhHHHhhccccCCc
Q 014227          211 SIPLKYLDIHYCYSMKEIEI------SASSLVSFRYSGKDI---KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQ  281 (428)
Q Consensus       211 ~~~L~~L~l~~c~~l~~i~i------~ap~L~~L~~~~~~~---~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~  281 (428)
                      +++|+.|++.++. +..+..      ..++|+.|++.+...   +..+..+++|+.+++..+........ ..+ ..+++
T Consensus       346 ~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~-~~l~~  422 (570)
T 2z63_A          346 LPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF-SVF-LSLRN  422 (570)
T ss_dssp             CTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTS-CTT-TTCTT
T ss_pred             CCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccch-hhh-hcCCC
Confidence            4556666665554 222210      236666666655422   12255666777766654433221000 112 56677


Q ss_pred             ceeEEeeeeeeeecccC-CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCcC--c
Q 014227          282 LKTLDLECCNEVFMEFG-HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVH--L  358 (428)
Q Consensus       282 l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~~--~  358 (428)
                      |+.|+++.+........ ...+++|++|++..+....   ..+...+..+|+|+.|++....       .....|..  .
T Consensus       423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~p~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~  492 (570)
T 2z63_A          423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE---NFLPDIFTELRNLTFLDLSQCQ-------LEQLSPTAFNS  492 (570)
T ss_dssp             CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG---GEECSCCTTCTTCCEEECTTSC-------CCEECTTTTTT
T ss_pred             CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcc---ccchhhhhcccCCCEEECCCCc-------cccCChhhhhc
Confidence            77777766643322211 5566777777773321110   0122345677788888775432       11112322  2


Q ss_pred             cCCccEEEEeeeeeCCchHHHHHHHHhcccccccEEEecCc
Q 014227          359 HQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEKMIIKPSS  399 (428)
Q Consensus       359 ~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i~~~~  399 (428)
                      ..+|+.+.+.+-.-..-.    ...+.+.+.|+.+.+...+
T Consensus       493 l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          493 LSSLQVLNMASNQLKSVP----DGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             CTTCCEEECCSSCCSCCC----TTTTTTCTTCCEEECCSSC
T ss_pred             ccCCCEEeCCCCcCCCCC----HHHhhcccCCcEEEecCCc
Confidence            478999988763222111    1124678999999887553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.17  E-value=1.1e-06  Score=78.23  Aligned_cols=190  Identities=13%  Similarity=0.041  Sum_probs=109.0

Q ss_pred             cccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEE--ecCCCCcceEEeeecCCcceEE----EECCCcce
Q 014227          164 KSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKV--VGSSIPLKYLDIHYCYSMKEIE----ISASSLVS  237 (428)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~----i~ap~L~~  237 (428)
                      ++|++|+|.+..+..-. ...+.++++|+.|.+.++..++.+.-  -..+++|++|++.+|..+..+.    -..++|+.
T Consensus        31 ~~l~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIP-SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TTCCEEEEESCCCSEEC-TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CcccEEEEeCCcceEEC-HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            47888888877643211 11256788888888887763433221  1245788888888755555543    23578888


Q ss_pred             EEEcceeee-e-ecCCCCCee---EEEEecc-CcchhhHHHhhccccCCcce-eEEeeeeeeeecccCCCCCCCccEEEE
Q 014227          238 FRYSGKDIK-L-HVGNVPQLV---DVVIHGA-PLFQVRYFIGLVVCCFPQLK-TLDLECCNEVFMEFGHWELPKLLHLKL  310 (428)
Q Consensus       238 L~~~~~~~~-~-~~~~~p~L~---~l~l~~~-~~~~~~~~~~l~~~~~~~l~-~L~l~~~~~~~~~~~~~~~~~L~~L~l  310 (428)
                      |.+.+.... + .+..+++|+   .+++..+ ....+..  ..+ ..+++|+ .|+++..............++|++|.+
T Consensus       110 L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~--~~~-~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L  186 (239)
T 2xwt_C          110 LGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV--NAF-QGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYL  186 (239)
T ss_dssp             EEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECT--TTT-TTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEEC
T ss_pred             EeCCCCCCccccccccccccccccEEECCCCcchhhcCc--ccc-cchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEc
Confidence            887765331 1 145566666   8888765 3332111  122 6788888 999877654421111222267888888


Q ss_pred             Eeec-CCCCchhHHHHHHHhC-CCccEEEEEEecCCCCcccccccCCcCccCCccEEEEee
Q 014227          311 TITE-PNCESLLGLSFVLKAC-PFLQKLVIKIWNNNRTIGEKRHQIPVHLHQHLKVVELHE  369 (428)
Q Consensus       311 ~~~~-~~~~~~~~l~~lL~~~-P~L~~L~i~~~~~~~~~~~~~~~~p~~~~~~L~~v~i~~  369 (428)
                      ..+. -..  ..  ...+..+ ++|+.|++....       ... +|.....+|+.+.+.+
T Consensus       187 ~~n~~l~~--i~--~~~~~~l~~~L~~L~l~~N~-------l~~-l~~~~~~~L~~L~l~~  235 (239)
T 2xwt_C          187 NKNKYLTV--ID--KDAFGGVYSGPSLLDVSQTS-------VTA-LPSKGLEHLKELIARN  235 (239)
T ss_dssp             TTCTTCCE--EC--TTTTTTCSBCCSEEECTTCC-------CCC-CCCTTCTTCSEEECTT
T ss_pred             CCCCCccc--CC--HHHhhccccCCcEEECCCCc-------ccc-CChhHhccCceeeccC
Confidence            4431 111  10  2234567 899999886431       112 4444567787777653

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.16  E-value=4.5e-07  Score=84.36  Aligned_cols=31  Identities=13%  Similarity=-0.182  Sum_probs=14.7

Q ss_pred             ceeEEeeeeeeeecccC-CCCCCCccEEEEEe
Q 014227          282 LKTLDLECCNEVFMEFG-HWELPKLLHLKLTI  312 (428)
Q Consensus       282 l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~  312 (428)
                      |+.|+++.+........ ...+++|+.|+|..
T Consensus       199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  230 (313)
T 1ogq_A          199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK  230 (313)
T ss_dssp             CSEEECCSSEEEECCGGGCCTTSCCSEEECCS
T ss_pred             ccEEECcCCcccCcCCHHHhcCCCCCEEECCC
Confidence            56666655533322111 44555666665533

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.15  E-value=4.4e-06  Score=83.28  Aligned_cols=216  Identities=14%  Similarity=0.159  Sum_probs=117.8

Q ss_pred             CCCCcccceEEeeeEEeehHHHHHHHh--cCCcccceeecccCCceeeEEe------cCCCC------------------
Q 014227          160 LSGIKSLRSLCLNALKVSGEVLEFFIH--SCPHLEHLYVANSSELLSLKVV------GSSIP------------------  213 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~--~cp~Le~L~L~~~~~~~~l~i~------~~~~~------------------  213 (428)
                      +..+++|+.|++.++.+.+..+..+..  .++.|+.|.+.+|...+.+...      ..++.                  
T Consensus       216 l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~  295 (520)
T 2z7x_B          216 LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI  295 (520)
T ss_dssp             GGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHH
T ss_pred             hccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhh
Confidence            456788888888888887765555443  3578999998877532111000      12233                  


Q ss_pred             --------cceEEeeecCCcceEE--EECCCcceEEEcceee----eeecCCCCCeeEEEEeccCcchhhHHHhhccccC
Q 014227          214 --------LKYLDIHYCYSMKEIE--ISASSLVSFRYSGKDI----KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCF  279 (428)
Q Consensus       214 --------L~~L~l~~c~~l~~i~--i~ap~L~~L~~~~~~~----~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~  279 (428)
                              |+.|.+.++. +..+.  -..++|++|++.+...    +..+..+++|+.+++..+...+++.+...+ ..+
T Consensus       296 ~~~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~-~~l  373 (520)
T 2z7x_B          296 YEIFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT-TQM  373 (520)
T ss_dssp             HHHHHTCCCSEEEEESSC-CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHH-TTC
T ss_pred             hcccccCceeEEEcCCCc-cccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHH-hhC
Confidence                    4444444443 11111  2456788888776643    223567888888888776655433222223 778


Q ss_pred             CcceeEEeeeeeeee-cccC-CCCCCCccEEEEEeecCCCCchhHHHHHHHhC-CCccEEEEEEecCCCCcccccccCCc
Q 014227          280 PQLKTLDLECCNEVF-MEFG-HWELPKLLHLKLTITEPNCESLLGLSFVLKAC-PFLQKLVIKIWNNNRTIGEKRHQIPV  356 (428)
Q Consensus       280 ~~l~~L~l~~~~~~~-~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~-P~L~~L~i~~~~~~~~~~~~~~~~p~  356 (428)
                      ++|+.|+++.+.... .... ...+++|++|++..+.....       +.... ++|+.|+++...-       .. +|.
T Consensus       374 ~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~-------~~~~l~~~L~~L~Ls~N~l-------~~-ip~  438 (520)
T 2z7x_B          374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT-------IFRCLPPRIKVLDLHSNKI-------KS-IPK  438 (520)
T ss_dssp             TTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGG-------GGGSCCTTCCEEECCSSCC-------CC-CCG
T ss_pred             CCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcc-------hhhhhcccCCEEECCCCcc-------cc-cch
Confidence            888888887775443 1111 45567788887744322110       11222 5777777765421       11 332


Q ss_pred             C--ccCCccEEEEeeee--eCCchHHHHHHHHhcccccccEEEecC
Q 014227          357 H--LHQHLKVVELHEFR--WLQIDPEIAFFIFRNAKVLEKMIIKPS  398 (428)
Q Consensus       357 ~--~~~~L~~v~i~~f~--g~~~e~~~~~~ll~~a~~L~~l~i~~~  398 (428)
                      .  ...+|+.+.+.+-+  ....+      .+.+.+.|+.+.+...
T Consensus       439 ~~~~l~~L~~L~L~~N~l~~l~~~------~~~~l~~L~~L~l~~N  478 (520)
T 2z7x_B          439 QVVKLEALQELNVASNQLKSVPDG------IFDRLTSLQKIWLHTN  478 (520)
T ss_dssp             GGGGCTTCCEEECCSSCCCCCCTT------TTTTCTTCCEEECCSS
T ss_pred             hhhcCCCCCEEECCCCcCCccCHH------HhccCCcccEEECcCC
Confidence            1  24566666666422  11111      2345667777766544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.14  E-value=6.4e-07  Score=81.51  Aligned_cols=61  Identities=16%  Similarity=0.081  Sum_probs=36.2

Q ss_pred             CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeE-EecCCCCcceEEeeecC
Q 014227          160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLK-VVGSSIPLKYLDIHYCY  223 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~-i~~~~~~L~~L~l~~c~  223 (428)
                      +..+++|+.|+|.+..+.+-.   .+..+++|+.|.+.+|....... .-..+++|+.|++.++.
T Consensus        59 l~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  120 (272)
T 3rfs_A           59 IQYLPNVRYLALGGNKLHDIS---ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ  120 (272)
T ss_dssp             GGGCTTCCEEECTTSCCCCCG---GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             cccCCCCcEEECCCCCCCCch---hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc
Confidence            445788888888877665421   36677888888887774322110 01234566666666654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.14  E-value=1.5e-06  Score=79.86  Aligned_cols=147  Identities=19%  Similarity=0.163  Sum_probs=84.7

Q ss_pred             CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEEECCCcceEE
Q 014227          160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFR  239 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~  239 (428)
                      +..+++|+.|+|.++.+.+-.-   +.++++|+.|.+.++.... +.--..+++|+.|+++++. +..+.          
T Consensus        64 ~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~-i~~~~----------  128 (291)
T 1h6t_A           64 IQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVKD-LSSLKDLKKLKSLSLEHNG-ISDIN----------  128 (291)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCC-GGGGTTCTTCCEEECTTSC-CCCCG----------
T ss_pred             HhcCCCCCEEEccCCccCCCcc---cccCCCCCEEECCCCcCCC-ChhhccCCCCCEEECCCCc-CCCCh----------
Confidence            4467888888888887654221   7788888888888775322 2112244677777776664 22210          


Q ss_pred             EcceeeeeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecCCCCc
Q 014227          240 YSGKDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNCES  319 (428)
Q Consensus       240 ~~~~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  319 (428)
                              .+..+++|+.+++..+...++    ..+ ..+++|+.|.++.+..... .+...+++|++|.+..+....  
T Consensus       129 --------~l~~l~~L~~L~l~~n~l~~~----~~l-~~l~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~L~~N~i~~--  192 (291)
T 1h6t_A          129 --------GLVHLPQLESLYLGNNKITDI----TVL-SRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISD--  192 (291)
T ss_dssp             --------GGGGCTTCCEEECCSSCCCCC----GGG-GGCTTCSEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCB--
T ss_pred             --------hhcCCCCCCEEEccCCcCCcc----hhh-ccCCCCCEEEccCCccccc-hhhcCCCccCEEECCCCcCCC--
Confidence                    123455555555554433322    112 6677777777776643322 125666777777774432221  


Q ss_pred             hhHHHHHHHhCCCccEEEEEEe
Q 014227          320 LLGLSFVLKACPFLQKLVIKIW  341 (428)
Q Consensus       320 ~~~l~~lL~~~P~L~~L~i~~~  341 (428)
                      ..   . +..+++|+.|++...
T Consensus       193 l~---~-l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          193 LR---A-LAGLKNLDVLELFSQ  210 (291)
T ss_dssp             CG---G-GTTCTTCSEEEEEEE
T ss_pred             Ch---h-hccCCCCCEEECcCC
Confidence            21   1 567778888887765

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.13  E-value=5.5e-06  Score=84.17  Aligned_cols=10  Identities=0%  Similarity=0.052  Sum_probs=5.3

Q ss_pred             CCCeEEEEEe
Q 014227          126 KKVQNFELDF  135 (428)
Q Consensus       126 ~~l~~L~l~~  135 (428)
                      ++++.|++..
T Consensus        61 ~~L~~L~L~~   70 (622)
T 3g06_A           61 AHITTLVIPD   70 (622)
T ss_dssp             TTCSEEEECS
T ss_pred             CCCcEEEecC
Confidence            3556665543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.13  E-value=8.6e-07  Score=84.21  Aligned_cols=178  Identities=15%  Similarity=0.195  Sum_probs=99.9

Q ss_pred             CCc-ccceEEeeeEEeehH---HHHHHHhcC-CcccceeecccCCceee-E-E---ecCC-CCcceEEeeecCCcceEEE
Q 014227          162 GIK-SLRSLCLNALKVSGE---VLEFFIHSC-PHLEHLYVANSSELLSL-K-V---VGSS-IPLKYLDIHYCYSMKEIEI  230 (428)
Q Consensus       162 ~~~-~L~~L~L~~~~~~~~---~l~~ll~~c-p~Le~L~L~~~~~~~~l-~-i---~~~~-~~L~~L~l~~c~~l~~i~i  230 (428)
                      +++ +|++|+|+++.+.+.   .+..++..+ +.|++|+|.+|...... . +   -..+ ++|+.|++++|. +.....
T Consensus        48 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~  126 (362)
T 3goz_A           48 NTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSS  126 (362)
T ss_dssp             TCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCH
T ss_pred             hCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHH
Confidence            466 888888888887653   355555554 88888888887632210 0 0   1122 578888888776 332211


Q ss_pred             E---------CCCcceEEEcceeeee--------ecCCCC-CeeEEEEeccCcch--hhHHHhhccccC-CcceeEEeee
Q 014227          231 S---------ASSLVSFRYSGKDIKL--------HVGNVP-QLVDVVIHGAPLFQ--VRYFIGLVVCCF-PQLKTLDLEC  289 (428)
Q Consensus       231 ~---------ap~L~~L~~~~~~~~~--------~~~~~p-~L~~l~l~~~~~~~--~~~~~~l~~~~~-~~l~~L~l~~  289 (428)
                      .         ..+|++|++.+..+..        .+...+ +|+++++..+...+  ...+...+ ..+ ++|+.|+++.
T Consensus       127 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l-~~~~~~L~~L~Ls~  205 (362)
T 3goz_A          127 SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL-ASIPASVTSLDLSA  205 (362)
T ss_dssp             HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH-HTSCTTCCEEECTT
T ss_pred             HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHH-HhCCCCCCEEECCC
Confidence            1         1377777777653320        112333 77777776655443  11222333 455 4777777766


Q ss_pred             eeeeecc---cC--CCC-CCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227          290 CNEVFME---FG--HWE-LPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIW  341 (428)
Q Consensus       290 ~~~~~~~---~~--~~~-~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~  341 (428)
                      +......   ++  ... .++|++|+|..+.........+..+++.+++|+.|++...
T Consensus       206 N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n  263 (362)
T 3goz_A          206 NLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD  263 (362)
T ss_dssp             SCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred             CCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence            6433211   11  112 3477777775554444444455566667777777777654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.13  E-value=2.2e-06  Score=79.53  Aligned_cols=109  Identities=13%  Similarity=0.048  Sum_probs=66.5

Q ss_pred             eeEEEEEeecCCCccchHHHHHHHHHhCCCeEEEEEeCCCCCCCccccchhhhhccCCCCCC--CCCcccceEEeeeEEe
Q 014227           99 INKFRIRCTLDNSHGRDITNWIYTATAKKVQNFELDFWPPSHINDYAFPLERYNFLKRGHGL--SGIKSLRSLCLNALKV  176 (428)
Q Consensus        99 l~~l~l~~~~~~~~~~~~~~wl~~~~~~~l~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~--~~~~~L~~L~L~~~~~  176 (428)
                      ++.+.+.-  .......+..........++++|++......    ...          |..+  ..+++|++|+|.+..+
T Consensus        66 l~~l~l~~--~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~----~~~----------~~~~~~~~~~~L~~L~Ls~n~i  129 (310)
T 4glp_A           66 VRRLTVGA--AQVPAQLLVGALRVLAYSRLKELTLEDLKIT----GTM----------PPLPLEATGLALSSLRLRNVSW  129 (310)
T ss_dssp             CCEEEECS--CCCBHHHHHHHHHHHHHSCCCEEEEESCCCB----SCC----------CCCSSSCCCBCCSSCEEESCCC
T ss_pred             eeEEEEeC--CcCCHHHHHHHHHhcccCceeEEEeeCCEec----cch----------hhhhhhccCCCCCEEEeecccc
Confidence            55555431  1122234555666666678999999665422    111          1222  5689999999999988


Q ss_pred             ehHH--HH-HHHhcCCcccceeecccCCceee-EEecCCCCcceEEeeecC
Q 014227          177 SGEV--LE-FFIHSCPHLEHLYVANSSELLSL-KVVGSSIPLKYLDIHYCY  223 (428)
Q Consensus       177 ~~~~--l~-~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~  223 (428)
                      .+..  +. .-+..+++|+.|.|.++...... ..-..+++|+.|+++++.
T Consensus       130 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  180 (310)
T 4glp_A          130 ATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNP  180 (310)
T ss_dssp             SSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCT
T ss_pred             cchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCC
Confidence            7521  11 22458999999999988643221 111245778888887775

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.12  E-value=8.7e-07  Score=80.59  Aligned_cols=169  Identities=15%  Similarity=0.128  Sum_probs=103.1

Q ss_pred             CCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEE----ECCCcce
Q 014227          162 GIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEI----SASSLVS  237 (428)
Q Consensus       162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i----~ap~L~~  237 (428)
                      .+++|+.|.+.+..+.+-.   -+..+|+|+.|.+.++.... +..-..+++|+.|++.+|. +..+.-    ..++|++
T Consensus        39 ~l~~L~~L~l~~~~i~~~~---~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQ---GIQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCT---TGGGCTTCCEEECTTSCCCC-CGGGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCE
T ss_pred             cccceeeeeeCCCCccccc---ccccCCCCcEEECCCCCCCC-chhhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCE
Confidence            3677888888777654321   16678888888888775322 2222345788888888775 333321    2477888


Q ss_pred             EEEcceeee-e---ecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEEe
Q 014227          238 FRYSGKDIK-L---HVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLTI  312 (428)
Q Consensus       238 L~~~~~~~~-~---~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~  312 (428)
                      |.+.+..+. +   .+..+++|+.+++..+....+..  ..+ ..+++|+.|+++.+........ ...+++|++|++..
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  190 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK--GVF-DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ  190 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCH--HHh-ccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCC
Confidence            888776442 2   25667888888887665443110  222 6778888888877754322111 45677888888854


Q ss_pred             ecCCCCchhHHHHHHHhCCCccEEEEEEec
Q 014227          313 TEPNCESLLGLSFVLKACPFLQKLVIKIWN  342 (428)
Q Consensus       313 ~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~  342 (428)
                      +......    ...+..+++|+.|++...+
T Consensus       191 N~l~~~~----~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          191 NQLKSVP----DGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             SCCSCCC----TTTTTTCTTCCEEECCSSC
T ss_pred             CcCCccC----HHHHhCCcCCCEEEccCCC
Confidence            4322211    2345678888888887654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.12  E-value=2e-06  Score=88.17  Aligned_cols=194  Identities=10%  Similarity=0.036  Sum_probs=114.9

Q ss_pred             CCCeEEEEEeCCCCCCCccccchhhhhccCCCCCCCCCcccceEEeeeEE-eehHHHHHHH------hcCCcccceeecc
Q 014227          126 KKVQNFELDFWPPSHINDYAFPLERYNFLKRGHGLSGIKSLRSLCLNALK-VSGEVLEFFI------HSCPHLEHLYVAN  198 (428)
Q Consensus       126 ~~l~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~-~~~~~l~~ll------~~cp~Le~L~L~~  198 (428)
                      +++++|++..+...    ..          +|..+.++++|++|+|.++. +.+..+..-+      ..+++|+.|.+.+
T Consensus       249 ~~L~~L~L~~n~l~----~~----------~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~  314 (636)
T 4eco_A          249 KDLTDVEVYNCPNL----TK----------LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY  314 (636)
T ss_dssp             TTCCEEEEECCTTC----SS----------CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred             CCCCEEEecCCcCC----cc----------ChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence            47888888655321    12          34456779999999999997 6652333223      3469999999998


Q ss_pred             cCCceeeE--EecCCCCcceEEeeecCCcceEE--EECCCcceEEEcceeee---eecCCCCC-eeEEEEeccCcchhhH
Q 014227          199 SSELLSLK--VVGSSIPLKYLDIHYCYSMKEIE--ISASSLVSFRYSGKDIK---LHVGNVPQ-LVDVVIHGAPLFQVRY  270 (428)
Q Consensus       199 ~~~~~~l~--i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~L~~~~~~~~---~~~~~~p~-L~~l~l~~~~~~~~~~  270 (428)
                      +.......  .-..+++|+.|++.++..-..+.  -..++|+.|.+.+....   -.+.++++ |+.+++..+....+..
T Consensus       315 n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~  394 (636)
T 4eco_A          315 NNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPN  394 (636)
T ss_dssp             SCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCS
T ss_pred             CcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccch
Confidence            86542111  12356789999998886321332  23467888888776442   23456677 8888887655442211


Q ss_pred             HHhhcccc--CCcceeEEeeeeeeeecccC-CC-------CCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEE
Q 014227          271 FIGLVVCC--FPQLKTLDLECCNEVFMEFG-HW-------ELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKI  340 (428)
Q Consensus       271 ~~~l~~~~--~~~l~~L~l~~~~~~~~~~~-~~-------~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~  340 (428)
                         .+ ..  +++|+.|+++.+......-. ..       .+++|++|++..+....  ..  ..+++.+++|+.|++..
T Consensus       395 ---~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~--lp--~~~~~~l~~L~~L~Ls~  466 (636)
T 4eco_A          395 ---IF-DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK--FP--KELFSTGSPLSSINLMG  466 (636)
T ss_dssp             ---CC-CTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS--CC--THHHHTTCCCSEEECCS
T ss_pred             ---hh-hhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCc--CC--HHHHccCCCCCEEECCC
Confidence               11 22  34788888876643221101 22       45578887775443221  11  24456778888888765


Q ss_pred             e
Q 014227          341 W  341 (428)
Q Consensus       341 ~  341 (428)
                      .
T Consensus       467 N  467 (636)
T 4eco_A          467 N  467 (636)
T ss_dssp             S
T ss_pred             C
Confidence            3

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.12  E-value=1.6e-07  Score=98.85  Aligned_cols=151  Identities=9%  Similarity=0.068  Sum_probs=85.6

Q ss_pred             CCCCCCCCcccceEEeeeEEeehH----------------HHHHHHh--cCCcccceeecccCCceeeE-EecCCCCcce
Q 014227          156 RGHGLSGIKSLRSLCLNALKVSGE----------------VLEFFIH--SCPHLEHLYVANSSELLSLK-VVGSSIPLKY  216 (428)
Q Consensus       156 lp~~~~~~~~L~~L~L~~~~~~~~----------------~l~~ll~--~cp~Le~L~L~~~~~~~~l~-i~~~~~~L~~  216 (428)
                      +|..+.++++|+.|+|.+..+.++                .+..-+.  ++++|+.|.|.+|...+.+. .-..+++|+.
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            455566778888888888776652                1233333  77888888887776443221 1124567777


Q ss_pred             EEeeecCCcce--EE----------EECCCcceEEEcceee---ee--ecCCCCCeeEEEEeccCcchhhHHHhhccccC
Q 014227          217 LDIHYCYSMKE--IE----------ISASSLVSFRYSGKDI---KL--HVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCF  279 (428)
Q Consensus       217 L~l~~c~~l~~--i~----------i~ap~L~~L~~~~~~~---~~--~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~  279 (428)
                      |+++++..+..  +.          ...|+|+.|.+.+..+   +.  .+.++++|+.+++..+....+.    .+ ..+
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp----~~-~~L  594 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE----AF-GTN  594 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC----CC-CTT
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch----hh-cCC
Confidence            77777652221  10          1124777777766533   22  3556777777777655433222    12 566


Q ss_pred             CcceeEEeeeeeeeecccC--CCCCCC-ccEEEEEee
Q 014227          280 PQLKTLDLECCNEVFMEFG--HWELPK-LLHLKLTIT  313 (428)
Q Consensus       280 ~~l~~L~l~~~~~~~~~~~--~~~~~~-L~~L~l~~~  313 (428)
                      ++|+.|.++.+...  .+|  ...+++ |++|.|..+
T Consensus       595 ~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N  629 (876)
T 4ecn_A          595 VKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHN  629 (876)
T ss_dssp             SEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSS
T ss_pred             CcceEEECcCCccc--cchHHHhhccccCCEEECcCC
Confidence            67777777665443  233  445555 777666443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.11  E-value=8.3e-07  Score=82.53  Aligned_cols=192  Identities=17%  Similarity=0.029  Sum_probs=120.3

Q ss_pred             CCCeEEEEEe-CCCCCCCccccchhhhhccCCCCCCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCcee
Q 014227          126 KKVQNFELDF-WPPSHINDYAFPLERYNFLKRGHGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLS  204 (428)
Q Consensus       126 ~~l~~L~l~~-~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~  204 (428)
                      ++++.|++.. ....    ..+|          ..+..+++|++|+|.+..+.+. +...+.++++|+.|+|.++...+.
T Consensus        76 ~~L~~L~L~~~n~l~----~~~p----------~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~  140 (313)
T 1ogq_A           76 PYLNFLYIGGINNLV----GPIP----------PAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGT  140 (313)
T ss_dssp             TTCSEEEEEEETTEE----SCCC----------GGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSSEEESC
T ss_pred             CCCCeeeCCCCCccc----ccCC----------hhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCEEeCCCCccCCc
Confidence            5788888862 3211    1223          3355789999999998876532 112367889999999988763321


Q ss_pred             e-EEecCCCCcceEEeeecCCcceEE---EECC-CcceEEEcceeee----eecCCCCCeeEEEEeccCcch-hhHHHhh
Q 014227          205 L-KVVGSSIPLKYLDIHYCYSMKEIE---ISAS-SLVSFRYSGKDIK----LHVGNVPQLVDVVIHGAPLFQ-VRYFIGL  274 (428)
Q Consensus       205 l-~i~~~~~~L~~L~l~~c~~l~~i~---i~ap-~L~~L~~~~~~~~----~~~~~~p~L~~l~l~~~~~~~-~~~~~~l  274 (428)
                      + ..-..+++|+.|+++++.--..+.   ...+ +|+.|.+.+....    ..+..++ |+.+++..+.... ..   ..
T Consensus       141 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~---~~  216 (313)
T 1ogq_A          141 LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS---VL  216 (313)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG---GG
T ss_pred             CChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCC---HH
Confidence            1 111246889999998886211221   1223 8899988876442    2334454 8888887654432 11   23


Q ss_pred             ccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227          275 VVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIW  341 (428)
Q Consensus       275 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~  341 (428)
                      + ..+++|+.|.++.+......-....+++|++|+|..+....    .+...+..+++|+.|++...
T Consensus       217 ~-~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N  278 (313)
T 1ogq_A          217 F-GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG----TLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             C-CTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEE----CCCGGGGGCTTCCEEECCSS
T ss_pred             H-hcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccC----cCChHHhcCcCCCEEECcCC
Confidence            3 78999999999887554322225677899999995543221    12334678999999999754

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.10  E-value=7.9e-07  Score=80.75  Aligned_cols=58  Identities=19%  Similarity=0.121  Sum_probs=28.6

Q ss_pred             cccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEE--ecCCCCcceEEeeecC
Q 014227          164 KSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKV--VGSSIPLKYLDIHYCY  223 (428)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~  223 (428)
                      ++|+.|+|.+..+..-. ...+.++++|+.|.|.++... .+.-  -..+++|+.|++.++.
T Consensus        37 ~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~   96 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK   96 (270)
T ss_dssp             TTCSEEECCSSCCSCCC-TTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSC
T ss_pred             CCCCEEECcCCCCCeeC-HHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCc
Confidence            46677777666543211 112456667777777665421 1110  0123556666665553

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.09  E-value=1.9e-06  Score=90.29  Aligned_cols=176  Identities=19%  Similarity=0.132  Sum_probs=93.4

Q ss_pred             CCCcccceEEeeeEEeehHHHH--HHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEE--EECCCcc
Q 014227          161 SGIKSLRSLCLNALKVSGEVLE--FFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIE--ISASSLV  236 (428)
Q Consensus       161 ~~~~~L~~L~L~~~~~~~~~l~--~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~  236 (428)
                      ..+++|++|+|+++.+.+....  ..+.+|++|+.|.+.+|...+...+ ..+++|+.|++.+|.....+.  -..++|+
T Consensus       148 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~  226 (768)
T 3rgz_A          148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV-SRCVNLEFLDVSSNNFSTGIPFLGDCSALQ  226 (768)
T ss_dssp             CCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC-TTCTTCCEEECCSSCCCSCCCBCTTCCSCC
T ss_pred             ccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc-ccCCcCCEEECcCCcCCCCCcccccCCCCC
Confidence            5678888888888876553322  2367788888888877754332222 345777777777765221111  1235666


Q ss_pred             eEEEcceee----eeecCCCCCeeEEEEeccCcch-hh-------------------HHH-hhccccCCcceeEEeeeee
Q 014227          237 SFRYSGKDI----KLHVGNVPQLVDVVIHGAPLFQ-VR-------------------YFI-GLVVCCFPQLKTLDLECCN  291 (428)
Q Consensus       237 ~L~~~~~~~----~~~~~~~p~L~~l~l~~~~~~~-~~-------------------~~~-~l~~~~~~~l~~L~l~~~~  291 (428)
                      +|++.+...    +..+.++++|+.+++..+.... ..                   .+- .+. ..+++|+.|+++.+.
T Consensus       227 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~-~~~~~L~~L~Ls~n~  305 (768)
T 3rgz_A          227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLS-GACDTLTGLDLSGNH  305 (768)
T ss_dssp             EEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSC-TTCTTCSEEECCSSE
T ss_pred             EEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHH-hhcCcCCEEECcCCc
Confidence            666655432    1234455566666554443221 00                   000 111 224666666666554


Q ss_pred             eeecccC-CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227          292 EVFMEFG-HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIW  341 (428)
Q Consensus       292 ~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~  341 (428)
                      .....-. ...+++|++|++..+.... ...  ...+..+++|+.|++...
T Consensus       306 l~~~~p~~~~~l~~L~~L~L~~n~l~~-~ip--~~~l~~l~~L~~L~Ls~n  353 (768)
T 3rgz_A          306 FYGAVPPFFGSCSLLESLALSSNNFSG-ELP--MDTLLKMRGLKVLDLSFN  353 (768)
T ss_dssp             EEECCCGGGGGCTTCCEEECCSSEEEE-ECC--HHHHTTCTTCCEEECCSS
T ss_pred             CCCccchHHhcCCCccEEECCCCcccC-cCC--HHHHhcCCCCCEEeCcCC
Confidence            3322111 5566777777774332110 111  234567888888888654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.09  E-value=3.7e-05  Score=76.56  Aligned_cols=99  Identities=18%  Similarity=0.098  Sum_probs=44.6

Q ss_pred             cccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceee-EEecCCCCcceEEeeecCCcceEEE-ECCCcceEEEc
Q 014227          164 KSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSL-KVVGSSIPLKYLDIHYCYSMKEIEI-SASSLVSFRYS  241 (428)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~i-~ap~L~~L~~~  241 (428)
                      ++|+.|+|+++.+.+-. ...+.++++|+.|.|.++...+.. ..-..+++|++|+++++. +..+.. ..++|++|++.
T Consensus        21 ~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~l~~L~~L~L~   98 (520)
T 2z7x_B           21 QKTTILNISQNYISELW-TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKISCHPTVNLKHLDLS   98 (520)
T ss_dssp             TTCSEEECCSSCCCCCC-HHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEEECCCCCCCSEEECC
T ss_pred             ccccEEECCCCcccccC-hhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-eeecCccccCCccEEecc
Confidence            55566665555543211 112455555666666555422110 011234555555555553 222211 34555555555


Q ss_pred             ceee-----eeecCCCCCeeEEEEeccC
Q 014227          242 GKDI-----KLHVGNVPQLVDVVIHGAP  264 (428)
Q Consensus       242 ~~~~-----~~~~~~~p~L~~l~l~~~~  264 (428)
                      +...     +..+.++++|+.+++..+.
T Consensus        99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~  126 (520)
T 2z7x_B           99 FNAFDALPICKEFGNMSQLKFLGLSTTH  126 (520)
T ss_dssp             SSCCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred             CCccccccchhhhccCCcceEEEecCcc
Confidence            4422     1234455555555555443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.08  E-value=8.5e-07  Score=84.24  Aligned_cols=173  Identities=12%  Similarity=0.007  Sum_probs=104.2

Q ss_pred             CcccceEEeeeEEeeh---HHHHHHHhcC-CcccceeecccCCceee--EEe---cC-CCCcceEEeeecCCcceEEE--
Q 014227          163 IKSLRSLCLNALKVSG---EVLEFFIHSC-PHLEHLYVANSSELLSL--KVV---GS-SIPLKYLDIHYCYSMKEIEI--  230 (428)
Q Consensus       163 ~~~L~~L~L~~~~~~~---~~l~~ll~~c-p~Le~L~L~~~~~~~~l--~i~---~~-~~~L~~L~l~~c~~l~~i~i--  230 (428)
                      +++|++|+|.++.+.+   ..+...+..+ +.|+.|+|.+|......  .+.   .. .++|++|++++|. +.....  
T Consensus        79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~  157 (362)
T 3goz_A           79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDE  157 (362)
T ss_dssp             CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHH
T ss_pred             CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHH
Confidence            3889999999988764   3455666677 78999999888632210  010   01 2589999998876 221110  


Q ss_pred             ------EC-CCcceEEEcceeee-e-------ecCCC-CCeeEEEEeccCcch--hhHHHhhcccc-CCcceeEEeeeee
Q 014227          231 ------SA-SSLVSFRYSGKDIK-L-------HVGNV-PQLVDVVIHGAPLFQ--VRYFIGLVVCC-FPQLKTLDLECCN  291 (428)
Q Consensus       231 ------~a-p~L~~L~~~~~~~~-~-------~~~~~-p~L~~l~l~~~~~~~--~~~~~~l~~~~-~~~l~~L~l~~~~  291 (428)
                            .. ++|++|++.+..+. .       .+... ++|+.+++..+...+  ...+...+ .. .++|+.|+++++.
T Consensus       158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l-~~~~~~L~~L~Ls~N~  236 (362)
T 3goz_A          158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIF-SSIPNHVVSLNLCLNC  236 (362)
T ss_dssp             HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH-HHSCTTCCEEECCSSC
T ss_pred             HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHH-hcCCCCceEEECcCCC
Confidence                  12 38999988876442 1       12344 489999887776554  11222222 33 4689999998775


Q ss_pred             eeeccc---C--CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEE
Q 014227          292 EVFMEF---G--HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLV  337 (428)
Q Consensus       292 ~~~~~~---~--~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~  337 (428)
                      ......   .  ...+++|++|+|..+........++..+.+.+++++.|.
T Consensus       237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~  287 (362)
T 3goz_A          237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII  287 (362)
T ss_dssp             CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEE
T ss_pred             CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceE
Confidence            443221   1  466788999998766433344444555555555544443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.08  E-value=1e-06  Score=89.72  Aligned_cols=147  Identities=20%  Similarity=0.136  Sum_probs=92.5

Q ss_pred             CCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceee-EEecCCCCcceEEeeecCCcceEEE----ECC
Q 014227          159 GLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSL-KVVGSSIPLKYLDIHYCYSMKEIEI----SAS  233 (428)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~i----~ap  233 (428)
                      .+..+++|+.|+|.+..+..  +..-+.++++|+.|.+.++...... ..-..+++|+.|++.++.....+..    ..+
T Consensus       273 ~~~~l~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~  350 (606)
T 3t6q_A          273 TFHCFSGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE  350 (606)
T ss_dssp             TTTTCTTCSEEECTTSCCSC--CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred             HhccccCCCEEeccCCccCC--CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence            36778999999999887642  2222678899999999988643321 1123468999999998863322221    358


Q ss_pred             CcceEEEcceeee------eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC--CCCCCCc
Q 014227          234 SLVSFRYSGKDIK------LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG--HWELPKL  305 (428)
Q Consensus       234 ~L~~L~~~~~~~~------~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~--~~~~~~L  305 (428)
                      +|+.|++.+....      ..+..+++|+.+++..+.......  ..+ ..+++|+.|+++.+.......+  ...+++|
T Consensus       351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  427 (606)
T 3t6q_A          351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT--EAF-KECPQLELLDLAFTRLKVKDAQSPFQNLHLL  427 (606)
T ss_dssp             TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECT--TTT-TTCTTCSEEECTTCCEECCTTCCTTTTCTTC
T ss_pred             cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCH--HHh-cCCccCCeEECCCCcCCCcccchhhhCcccC
Confidence            8999998876442      236789999999997765433100  112 5667777777765543322211  3445555


Q ss_pred             cEEEE
Q 014227          306 LHLKL  310 (428)
Q Consensus       306 ~~L~l  310 (428)
                      ++|++
T Consensus       428 ~~L~l  432 (606)
T 3t6q_A          428 KVLNL  432 (606)
T ss_dssp             CEEEC
T ss_pred             CEEEC
Confidence            55555

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.06  E-value=9.5e-07  Score=89.60  Aligned_cols=99  Identities=15%  Similarity=0.190  Sum_probs=56.3

Q ss_pred             CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEE--EECCCcce
Q 014227          160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIE--ISASSLVS  237 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~  237 (428)
                      +..+++|+.|+|.++.+.+-.-   +..+++|+.|.|.+|.... +..-..+++|+.|.+.+|. +..+.  ...|+|+.
T Consensus        61 l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~  135 (605)
T 1m9s_A           61 IQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIKD-LSSLKDLKKLKSLSLEHNG-ISDINGLVHLPQLES  135 (605)
T ss_dssp             GGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCC-CTTSTTCTTCCEEECTTSC-CCCCGGGGGCTTCSE
T ss_pred             HccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCCCC-ChhhccCCCCCEEEecCCC-CCCCccccCCCccCE
Confidence            4568888888888887654221   7788888888888875322 2222345777778777775 22221  12355555


Q ss_pred             EEEcceeee--eecCCCCCeeEEEEecc
Q 014227          238 FRYSGKDIK--LHVGNVPQLVDVVIHGA  263 (428)
Q Consensus       238 L~~~~~~~~--~~~~~~p~L~~l~l~~~  263 (428)
                      |.+.+..+.  -.+..+++|+.+.+..+
T Consensus       136 L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N  163 (605)
T 1m9s_A          136 LYLGNNKITDITVLSRLTKLDTLSLEDN  163 (605)
T ss_dssp             EECCSSCCCCCGGGGSCTTCSEEECCSS
T ss_pred             EECCCCccCCchhhcccCCCCEEECcCC
Confidence            555544321  12334444444444433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.03  E-value=4.4e-06  Score=81.94  Aligned_cols=97  Identities=19%  Similarity=0.210  Sum_probs=46.5

Q ss_pred             CCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEE-ECCCcceEE
Q 014227          161 SGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEI-SASSLVSFR  239 (428)
Q Consensus       161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i-~ap~L~~L~  239 (428)
                      .++++|++|+|.+..+.+-.    +..+++|+.|.+.++...+ +.+ ..+++|+.|++..|.....+.+ ..++|+.|+
T Consensus       103 ~~l~~L~~L~L~~N~l~~l~----~~~l~~L~~L~l~~N~l~~-l~l-~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~  176 (457)
T 3bz5_A          103 TPLTKLTYLNCDTNKLTKLD----VSQNPLLTYLNCARNTLTE-IDV-SHNTQLTELDCHLNKKITKLDVTPQTQLTTLD  176 (457)
T ss_dssp             TTCTTCCEEECCSSCCSCCC----CTTCTTCCEEECTTSCCSC-CCC-TTCTTCCEEECTTCSCCCCCCCTTCTTCCEEE
T ss_pred             CCCCcCCEEECCCCcCCeec----CCCCCcCCEEECCCCccce-ecc-ccCCcCCEEECCCCCcccccccccCCcCCEEE
Confidence            34566666666666554321    4556666666666554222 222 2335556665555543333322 124555555


Q ss_pred             Ecceee-eeecCCCCCeeEEEEecc
Q 014227          240 YSGKDI-KLHVGNVPQLVDVVIHGA  263 (428)
Q Consensus       240 ~~~~~~-~~~~~~~p~L~~l~l~~~  263 (428)
                      +.+..+ .+.+..+++|+.+++..+
T Consensus       177 ls~n~l~~l~l~~l~~L~~L~l~~N  201 (457)
T 3bz5_A          177 CSFNKITELDVSQNKLLNRLNCDTN  201 (457)
T ss_dssp             CCSSCCCCCCCTTCTTCCEEECCSS
T ss_pred             CCCCccceeccccCCCCCEEECcCC
Confidence            544432 223445555555555443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.02  E-value=1.5e-06  Score=80.73  Aligned_cols=137  Identities=20%  Similarity=0.053  Sum_probs=65.8

Q ss_pred             CCCcccceEEeeeEEeehH--HHHHHHh-cCCcccceeecccCCceee-EEecCCCCcceEEeeecCCcceEEEECCCcc
Q 014227          161 SGIKSLRSLCLNALKVSGE--VLEFFIH-SCPHLEHLYVANSSELLSL-KVVGSSIPLKYLDIHYCYSMKEIEISASSLV  236 (428)
Q Consensus       161 ~~~~~L~~L~L~~~~~~~~--~l~~ll~-~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~  236 (428)
                      ..+++|++|+|.+..+.+.  .+..+.. .+++|+.|.|.++...... ..-..+++|+.|+++++...+.+.+      
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------  191 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL------  191 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH------
T ss_pred             hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH------
Confidence            5678888888888876543  2322211 1378888888877532211 0111345666666666642111000      


Q ss_pred             eEEEcceeeeeecCCCCCeeEEEEeccCcchhhHHH-hhccccCCcceeEEeeeeeeeecc-cC-CCCCCCccEEEEE
Q 014227          237 SFRYSGKDIKLHVGNVPQLVDVVIHGAPLFQVRYFI-GLVVCCFPQLKTLDLECCNEVFME-FG-HWELPKLLHLKLT  311 (428)
Q Consensus       237 ~L~~~~~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~-~l~~~~~~~l~~L~l~~~~~~~~~-~~-~~~~~~L~~L~l~  311 (428)
                             ...+.+..+++|+++++..+....+..+. .+. ..+++|+.|+++.+...... .+ ...+++|++|+++
T Consensus       192 -------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls  261 (312)
T 1wwl_A          192 -------ISALCPLKFPTLQVLALRNAGMETPSGVCSALA-AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS  261 (312)
T ss_dssp             -------HHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH-HTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECT
T ss_pred             -------HHHHHhccCCCCCEEECCCCcCcchHHHHHHHH-hcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECC
Confidence                   00011244555555555444433222111 222 45566666666555333222 11 2334566666663

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.00  E-value=4.2e-06  Score=88.20  Aligned_cols=192  Identities=11%  Similarity=0.126  Sum_probs=104.1

Q ss_pred             CCCeEEEEEeCCCCCCCccccchhhhhccCCCCCCCCCcccceEEeeeEE-eehHH----HHHH---HhcCCcccceeec
Q 014227          126 KKVQNFELDFWPPSHINDYAFPLERYNFLKRGHGLSGIKSLRSLCLNALK-VSGEV----LEFF---IHSCPHLEHLYVA  197 (428)
Q Consensus       126 ~~l~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~-~~~~~----l~~l---l~~cp~Le~L~L~  197 (428)
                      ++++.|++..+...    ..+|          ..+.++++|+.|+|.+.. +.+..    +..+   +..+|+|+.|.|.
T Consensus       491 ~~L~~L~Ls~N~l~----~~iP----------~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls  556 (876)
T 4ecn_A          491 KDLTDVELYNCPNM----TQLP----------DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG  556 (876)
T ss_dssp             TTCCEEEEESCTTC----CSCC----------GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECC
T ss_pred             CCCCEEECcCCCCC----ccCh----------HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEee
Confidence            57888888665321    1333          234568888888888886 55412    2222   2456688888888


Q ss_pred             ccCCceeeEE---ecCCCCcceEEeeecCCcceEE--EECCCcceEEEcceeee---eecCCCCC-eeEEEEeccCcchh
Q 014227          198 NSSELLSLKV---VGSSIPLKYLDIHYCYSMKEIE--ISASSLVSFRYSGKDIK---LHVGNVPQ-LVDVVIHGAPLFQV  268 (428)
Q Consensus       198 ~~~~~~~l~i---~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~L~~~~~~~~---~~~~~~p~-L~~l~l~~~~~~~~  268 (428)
                      ++... .+.-   -..+++|+.|+++++. +..+.  -..++|+.|.+.+..+.   -.+.++++ |+.+.+..+....+
T Consensus       557 ~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~l  634 (876)
T 4ecn_A          557 YNNLE-EFPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYI  634 (876)
T ss_dssp             SSCCC-BCCCHHHHTTCTTCCEEECTTSC-CCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSC
T ss_pred             CCcCC-ccCChhhhhcCCCCCEEECCCCC-cccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcC
Confidence            87643 2211   2245778888887775 23332  12367777777665332   23455666 77777765544322


Q ss_pred             hHHHhhccccC--CcceeEEeeeeeeeecc--cC----CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEE
Q 014227          269 RYFIGLVVCCF--PQLKTLDLECCNEVFME--FG----HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKI  340 (428)
Q Consensus       269 ~~~~~l~~~~~--~~l~~L~l~~~~~~~~~--~~----~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~  340 (428)
                      .   ..+ ...  ++|+.|.++.+......  ++    ....++|+.|+|..+...  ...  ..++..+++|+.|++..
T Consensus       635 p---~~~-~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~--~lp--~~~~~~l~~L~~L~Ls~  706 (876)
T 4ecn_A          635 P---NIF-NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ--KFP--TELFATGSPISTIILSN  706 (876)
T ss_dssp             C---SCC-CTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC--SCC--HHHHHTTCCCSEEECCS
T ss_pred             c---hhh-hccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC--ccC--HHHHccCCCCCEEECCC
Confidence            1   111 222  33777777665332210  11    112346777766443222  111  33455677777777764


Q ss_pred             e
Q 014227          341 W  341 (428)
Q Consensus       341 ~  341 (428)
                      .
T Consensus       707 N  707 (876)
T 4ecn_A          707 N  707 (876)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.00  E-value=2.4e-06  Score=71.50  Aligned_cols=63  Identities=13%  Similarity=0.140  Sum_probs=33.0

Q ss_pred             CCcccceEEeeeEE-eehHHHHHHHhc---CCcccceeecccCCceeeEE--ecCCCCcceEEeeecCC
Q 014227          162 GIKSLRSLCLNALK-VSGEVLEFFIHS---CPHLEHLYVANSSELLSLKV--VGSSIPLKYLDIHYCYS  224 (428)
Q Consensus       162 ~~~~L~~L~L~~~~-~~~~~l~~ll~~---cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~  224 (428)
                      +|++|++|+|.+|. ++|..+..+...   |+.|+.|+|.+|..+++-.+  -+.+++|++|++.+|+.
T Consensus        83 ~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~  151 (176)
T 3e4g_A           83 GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPG  151 (176)
T ss_dssp             TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTT
T ss_pred             CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCC
Confidence            45666666666664 555555554432   55666666666654442111  12345566666655554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.00  E-value=6.6e-06  Score=73.07  Aligned_cols=167  Identities=11%  Similarity=0.075  Sum_probs=101.1

Q ss_pred             CCCCcccceEEeeeEE-eehHHHHHHHhcCCcccceeecccCCceeeEE--ecCCCCcceEEeeecCCcceEE--EECCC
Q 014227          160 LSGIKSLRSLCLNALK-VSGEVLEFFIHSCPHLEHLYVANSSELLSLKV--VGSSIPLKYLDIHYCYSMKEIE--ISASS  234 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~--i~ap~  234 (428)
                      +.++++|++|+|.+.. +..-. ...+.++++|+.|.+.+|..+..+.-  -..+++|+.|++.++. +..+.  -..++
T Consensus        51 ~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~~~~l~~  128 (239)
T 2xwt_C           51 FSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPDLTKVYS  128 (239)
T ss_dssp             TTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCCCTTCCB
T ss_pred             ccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccccccccccc
Confidence            4578999999998874 42210 11257889999999988655554321  1245789999998875 22221  12355


Q ss_pred             cc---eEEEcce-ee-ee---ecCCCCCee-EEEEeccCcchhhHHHhhccccCCcceeEEeeeee-eeecccC-CCCC-
Q 014227          235 LV---SFRYSGK-DI-KL---HVGNVPQLV-DVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCN-EVFMEFG-HWEL-  302 (428)
Q Consensus       235 L~---~L~~~~~-~~-~~---~~~~~p~L~-~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~-~~~~~~~-~~~~-  302 (428)
                      |+   .|++.+. .. .+   .+.++++|+ .+++.......+..  ... .. ++|+.|+++.+. ....... ...+ 
T Consensus       129 L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~--~~~-~~-~~L~~L~L~~n~~l~~i~~~~~~~l~  204 (239)
T 2xwt_C          129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG--YAF-NG-TKLDAVYLNKNKYLTVIDKDAFGGVY  204 (239)
T ss_dssp             CCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT--TTT-TT-CEEEEEECTTCTTCCEECTTTTTTCS
T ss_pred             cccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH--hhc-CC-CCCCEEEcCCCCCcccCCHHHhhccc
Confidence            65   7777765 33 22   256788898 88886654433211  111 33 789999998773 4322111 4556 


Q ss_pred             CCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEE
Q 014227          303 PKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIK  339 (428)
Q Consensus       303 ~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~  339 (428)
                      ++|++|++..+.......       ..+++|+.|.+.
T Consensus       205 ~~L~~L~l~~N~l~~l~~-------~~~~~L~~L~l~  234 (239)
T 2xwt_C          205 SGPSLLDVSQTSVTALPS-------KGLEHLKELIAR  234 (239)
T ss_dssp             BCCSEEECTTCCCCCCCC-------TTCTTCSEEECT
T ss_pred             cCCcEEECCCCccccCCh-------hHhccCceeecc
Confidence            889999885432222111       167888888874

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=97.99  E-value=3e-06  Score=82.89  Aligned_cols=137  Identities=14%  Similarity=0.077  Sum_probs=86.3

Q ss_pred             CCcceEEEcceeee----eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccE
Q 014227          233 SSLVSFRYSGKDIK----LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLH  307 (428)
Q Consensus       233 p~L~~L~~~~~~~~----~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~  307 (428)
                      ++|+.|++.+....    ..+..+++|+.+++..+.......  ..+ ..+++|+.|+++.+........ ...+++|++
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  351 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD--NAF-WGLTHLLKLNLSQNFLGSIDSRMFENLDKLEV  351 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT--TTT-TTCTTCCEEECCSSCCCEECGGGGTTCTTCCE
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh--hHh-cCcccCCEEECCCCccCCcChhHhcCcccCCE
Confidence            57888887766432    236678899999997665543110  123 7889999999988755332212 677899999


Q ss_pred             EEEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCc---CccCCccEEEEee--eeeCCchHHHHHH
Q 014227          308 LKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPV---HLHQHLKVVELHE--FRWLQIDPEIAFF  382 (428)
Q Consensus       308 L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~---~~~~~L~~v~i~~--f~g~~~e~~~~~~  382 (428)
                      |+|..+......    ...+..+|+|+.|++....       ... .|.   ....+|+.+.+.+  +.+.-..+.++..
T Consensus       352 L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~N~-------l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~  419 (455)
T 3v47_A          352 LDLSYNHIRALG----DQSFLGLPNLKELALDTNQ-------LKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR  419 (455)
T ss_dssp             EECCSSCCCEEC----TTTTTTCTTCCEEECCSSC-------CSC-CCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHH
T ss_pred             EECCCCcccccC----hhhccccccccEEECCCCc-------ccc-CCHhHhccCCcccEEEccCCCcccCCCcchHHHH
Confidence            999554322211    2335679999999997642       111 222   1357899999886  4455444555544


Q ss_pred             HH
Q 014227          383 IF  384 (428)
Q Consensus       383 ll  384 (428)
                      .+
T Consensus       420 ~l  421 (455)
T 3v47_A          420 WL  421 (455)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.98  E-value=1.2e-06  Score=79.69  Aligned_cols=123  Identities=15%  Similarity=0.153  Sum_probs=62.2

Q ss_pred             cccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEE--ecCCCCcceEEeeecCCcceEEE----ECCCcce
Q 014227          164 KSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKV--VGSSIPLKYLDIHYCYSMKEIEI----SASSLVS  237 (428)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~i----~ap~L~~  237 (428)
                      ++|++|+|.+..+.+-.. ..+.++++|+.|.+.++... .+..  -..+++|+.|+++++. +..+..    ..++|+.
T Consensus        28 ~~l~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~  104 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQK  104 (276)
T ss_dssp             TTCCEEECTTCCCCEECT-TTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCE
T ss_pred             CCccEEECCCCcccccCH-hHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccE
Confidence            467777777765443111 12566777777777776432 1111  1234667777776664 232221    1356666


Q ss_pred             EEEcceeee----eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeee
Q 014227          238 FRYSGKDIK----LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCN  291 (428)
Q Consensus       238 L~~~~~~~~----~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~  291 (428)
                      |.+.+....    ..+..+++|+.+++..+....+. +...+ ..+++|+.|+++.+.
T Consensus       105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-l~~~~-~~l~~L~~L~Ls~N~  160 (276)
T 2z62_A          105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-LPEYF-SNLTNLEHLDLSSNK  160 (276)
T ss_dssp             EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC-CCGGG-GGCTTCCEEECCSSC
T ss_pred             EECCCCCccccCchhcccCCCCCEEECcCCccceec-Cchhh-ccCCCCCEEECCCCC
Confidence            666544221    13455666666666544333200 00112 556666666666553

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.96  E-value=4.7e-06  Score=76.53  Aligned_cols=79  Identities=16%  Similarity=0.138  Sum_probs=52.6

Q ss_pred             CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEE--EECCCcce
Q 014227          160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIE--ISASSLVS  237 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~  237 (428)
                      +.++++|+.|+|.+..+.+-  .. +..+++|+.|++.+|.... +.--..+++|+.|+++++. +..+.  -..++|+.
T Consensus        86 l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~L~~n~i~~-~~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~  160 (291)
T 1h6t_A           86 LANLKNLGWLFLDENKVKDL--SS-LKDLKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDT  160 (291)
T ss_dssp             GTTCTTCCEEECCSSCCCCG--GG-GTTCTTCCEEECTTSCCCC-CGGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSE
T ss_pred             cccCCCCCEEECCCCcCCCC--hh-hccCCCCCEEECCCCcCCC-ChhhcCCCCCCEEEccCCc-CCcchhhccCCCCCE
Confidence            55799999999999987652  22 7889999999999986432 2222345788888888875 22221  01245555


Q ss_pred             EEEcce
Q 014227          238 FRYSGK  243 (428)
Q Consensus       238 L~~~~~  243 (428)
                      |++.+.
T Consensus       161 L~L~~N  166 (291)
T 1h6t_A          161 LSLEDN  166 (291)
T ss_dssp             EECCSS
T ss_pred             EEccCC
Confidence            555444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.95  E-value=4.4e-06  Score=75.76  Aligned_cols=102  Identities=18%  Similarity=0.198  Sum_probs=57.1

Q ss_pred             CCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceee-EEecCCCCcceEEeeecCCcceEEE----ECC
Q 014227          159 GLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSL-KVVGSSIPLKYLDIHYCYSMKEIEI----SAS  233 (428)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~i----~ap  233 (428)
                      .+.++++|++|+|.+..+..- ...++.++++|+.|.|.++...... .+-..+++|+.|.+.++. +..+..    ..+
T Consensus        56 ~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~  133 (270)
T 2o6q_A           56 AFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLT  133 (270)
T ss_dssp             SSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred             HhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCc
Confidence            356789999999998876421 1123577899999999887532210 111235678888777765 222211    235


Q ss_pred             CcceEEEcceeee-e---ecCCCCCeeEEEEec
Q 014227          234 SLVSFRYSGKDIK-L---HVGNVPQLVDVVIHG  262 (428)
Q Consensus       234 ~L~~L~~~~~~~~-~---~~~~~p~L~~l~l~~  262 (428)
                      +|+.|++.+..+. +   .+..+++|+.+++..
T Consensus       134 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  166 (270)
T 2o6q_A          134 KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN  166 (270)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEECCCCcCCccCHhHccCCcccceeEecC
Confidence            5555555544221 1   133444555555543

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=97.94  E-value=3.9e-06  Score=76.03  Aligned_cols=36  Identities=22%  Similarity=0.632  Sum_probs=34.0

Q ss_pred             ccCCCCcHHHHHHHHhcCChHHHH-HHHHhhHHHhhh
Q 014227           21 DWFSKFPDDILVNIISRLTLKEAA-RTSVLSSRWKYL   56 (428)
Q Consensus        21 D~~s~LPd~iL~~Ils~L~~~d~~-~~s~vskrWr~l   56 (428)
                      ..+..||||++.+||++||.++++ ++++|||+||++
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l   85 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL   85 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence            468899999999999999999999 999999999986

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=97.94  E-value=2.5e-06  Score=86.82  Aligned_cols=122  Identities=10%  Similarity=0.046  Sum_probs=82.5

Q ss_pred             CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEE-ECCCcceE
Q 014227          160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEI-SASSLVSF  238 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i-~ap~L~~L  238 (428)
                      +..+++|+.|++.++.+..-.   .+..++.|+.|.+.+|.. +.+.-. .+++|+.|++.++.....+.+ ..|+|+.|
T Consensus       281 ~~~l~~L~~L~l~~~~~~~l~---~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L  355 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVSIKYLE---DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYL  355 (606)
T ss_dssp             CGGGTTCSEEEEESCCCCCCC---CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEE
T ss_pred             cccCCCCCEEEecCccchhhh---hccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccchhhccCCCCCEE
Confidence            567899999999988764422   367889999999999876 322211 568999999999865444432 45899999


Q ss_pred             EEcceeee------eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeee
Q 014227          239 RYSGKDIK------LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECC  290 (428)
Q Consensus       239 ~~~~~~~~------~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~  290 (428)
                      ++.+....      ..+..+++|+.+++..+....+.   ..+ ..+++|+.|.++.+
T Consensus       356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~---~~~-~~l~~L~~L~l~~n  409 (606)
T 3vq2_A          356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS---ANF-MGLEELQHLDFQHS  409 (606)
T ss_dssp             ECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC---CCC-TTCTTCCEEECTTS
T ss_pred             ECcCCccCCCcchhhhhccCCcccEeECCCCccccch---hhc-cCCCCCCeeECCCC
Confidence            98876432      23567899999998766543211   111 45556666666544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.93  E-value=4.1e-06  Score=78.32  Aligned_cols=61  Identities=23%  Similarity=0.194  Sum_probs=31.8

Q ss_pred             CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecC
Q 014227          160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCY  223 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~  223 (428)
                      +.++++|++|+|.+..+.+-. ...+.++++|+.|.+.++... .+... ..++|+.|.+.++.
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~-~l~~~-~~~~L~~L~l~~n~  132 (330)
T 1xku_A           72 FKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQLK-ELPEK-MPKTLQELRVHENE  132 (330)
T ss_dssp             TTTCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCCS-BCCSS-CCTTCCEEECCSSC
T ss_pred             hccCCCCCEEECCCCcCCeeC-HHHhcCCCCCCEEECCCCcCC-ccChh-hcccccEEECCCCc
Confidence            445677777777766543211 112556677777777665422 11111 11456666665554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.93  E-value=3.5e-06  Score=85.41  Aligned_cols=138  Identities=17%  Similarity=0.187  Sum_probs=59.0

Q ss_pred             CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEE--EECCCcceEEE
Q 014227          163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIE--ISASSLVSFRY  240 (428)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~L~~  240 (428)
                      +++|+.|.|.++.+.+-.   -+..|++|+.|.|.+|....... -..+++|+.|.+.+|. +..+.  -..++|+.|.+
T Consensus        42 L~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~L  116 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQ---GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLSSLKDLKKLKSLSL  116 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCT---TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCTTSTTCTTCCEEEC
T ss_pred             CCCCCEEECcCCCCCCCh---HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCChhhccCCCCCEEEe
Confidence            445555555554433211   14455555555555553221111 1233555555555553 11111  11245555555


Q ss_pred             cceeee--eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEE
Q 014227          241 SGKDIK--LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLT  311 (428)
Q Consensus       241 ~~~~~~--~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  311 (428)
                      .+..+.  -.+..+++|+.+.+..+...++    ..+ ..+++|+.|.|+.+..... .+...+++|++|.|.
T Consensus       117 s~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l----~~l-~~l~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls  183 (605)
T 1m9s_A          117 EHNGISDINGLVHLPQLESLYLGNNKITDI----TVL-SRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLS  183 (605)
T ss_dssp             TTSCCCCCGGGGGCTTCSEEECCSSCCCCC----GGG-GSCTTCSEEECCSSCCCCC-GGGTTCTTCCEEECC
T ss_pred             cCCCCCCCccccCCCccCEEECCCCccCCc----hhh-cccCCCCEEECcCCcCCCc-hhhccCCCCCEEECc
Confidence            444321  1233455555555544433322    112 4555555555554432211 114445555555553

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.91  E-value=1.4e-06  Score=80.87  Aligned_cols=213  Identities=15%  Similarity=0.102  Sum_probs=123.9

Q ss_pred             cceEEeeeEEeehHHHHHH-------HhcCCcccceeecccCCceeeEE---ecCCCCcceEEeeecCCcceEE---EE-
Q 014227          166 LRSLCLNALKVSGEVLEFF-------IHSCPHLEHLYVANSSELLSLKV---VGSSIPLKYLDIHYCYSMKEIE---IS-  231 (428)
Q Consensus       166 L~~L~L~~~~~~~~~l~~l-------l~~cp~Le~L~L~~~~~~~~l~i---~~~~~~L~~L~l~~c~~l~~i~---i~-  231 (428)
                      |+.|+|.+..+....+...       ..++++|+.|.|.++...+.+..   ...+++|+.|+++++. +..+.   -. 
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l  143 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAEL  143 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHH
Confidence            6666666655532111111       12577888888877754322111   1345778888887765 22210   01 


Q ss_pred             ----CCCcceEEEcceeee----eecCCCCCeeEEEEeccCcch-hhHHHhhccccCCcceeEEeeeeeeeec-ccC---
Q 014227          232 ----ASSLVSFRYSGKDIK----LHVGNVPQLVDVVIHGAPLFQ-VRYFIGLVVCCFPQLKTLDLECCNEVFM-EFG---  298 (428)
Q Consensus       232 ----ap~L~~L~~~~~~~~----~~~~~~p~L~~l~l~~~~~~~-~~~~~~l~~~~~~~l~~L~l~~~~~~~~-~~~---  298 (428)
                          .++|++|++.+..+.    -.+.++++|+.+++..+.... ......+....+++|+.|.++.+..... ..+   
T Consensus       144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  223 (312)
T 1wwl_A          144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL  223 (312)
T ss_dssp             HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred             HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence                278888888776432    246688999999998776433 1111122126789999999988755421 111   


Q ss_pred             CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCcCccCCccEEEEee--eeeCCch
Q 014227          299 HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVHLHQHLKVVELHE--FRWLQID  376 (428)
Q Consensus       299 ~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~~~~~~L~~v~i~~--f~g~~~e  376 (428)
                      ...+++|++|++..+.......   ...+..+++|+.|++....       ... +|.....+|+.+.+.+  +++..  
T Consensus       224 ~~~l~~L~~L~Ls~N~l~~~~~---~~~~~~l~~L~~L~Ls~N~-------l~~-ip~~~~~~L~~L~Ls~N~l~~~p--  290 (312)
T 1wwl_A          224 AAARVQLQGLDLSHNSLRDAAG---APSCDWPSQLNSLNLSFTG-------LKQ-VPKGLPAKLSVLDLSYNRLDRNP--  290 (312)
T ss_dssp             HHTTCCCSEEECTTSCCCSSCC---CSCCCCCTTCCEEECTTSC-------CSS-CCSSCCSEEEEEECCSSCCCSCC--
T ss_pred             HhcCCCCCEEECCCCcCCcccc---hhhhhhcCCCCEEECCCCc-------cCh-hhhhccCCceEEECCCCCCCCCh--
Confidence            3466899999995543222110   1122457899999997542       222 5655557888888875  22221  


Q ss_pred             HHHHHHHHhcccccccEEEecC
Q 014227          377 PEIAFFIFRNAKVLEKMIIKPS  398 (428)
Q Consensus       377 ~~~~~~ll~~a~~L~~l~i~~~  398 (428)
                       .     +.+.+.|+.+.+...
T Consensus       291 -~-----~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          291 -S-----PDELPQVGNLSLKGN  306 (312)
T ss_dssp             -C-----TTTSCEEEEEECTTC
T ss_pred             -h-----HhhCCCCCEEeccCC
Confidence             1     356788888877543

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.89  E-value=2.7e-06  Score=76.22  Aligned_cols=34  Identities=18%  Similarity=0.378  Sum_probs=32.1

Q ss_pred             CCCCcHHHHHHHHhcCChHHHHHHHHhhHHHhhh
Q 014227           23 FSKFPDDILVNIISRLTLKEAARTSVLSSRWKYL   56 (428)
Q Consensus        23 ~s~LPd~iL~~Ils~L~~~d~~~~s~vskrWr~l   56 (428)
                      |+.||+||+.+||+||+.+|+++++.|||+||.+
T Consensus         5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l   38 (312)
T 3l2o_B            5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET   38 (312)
T ss_dssp             HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred             hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            6689999999999999999999999999999973

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.89  E-value=2.7e-06  Score=78.12  Aligned_cols=98  Identities=15%  Similarity=0.134  Sum_probs=52.4

Q ss_pred             CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEE---ECCCcceEE
Q 014227          163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEI---SASSLVSFR  239 (428)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i---~ap~L~~L~  239 (428)
                      +++|+.|+|.+..+..-. ...+.++++|+.|.|.++.. ..+.....+++|+.|+++++. +..+.-   ..++|+.|.
T Consensus        30 ~~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~  106 (290)
T 1p9a_G           30 PKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAEL-TKLQVDGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLD  106 (290)
T ss_dssp             CTTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSCC-CEEECCSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEE
T ss_pred             CCCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCcc-CcccCCCCCCcCCEEECCCCc-CCcCchhhccCCCCCEEE
Confidence            467888888877653311 11366788888888887653 222222455777777777664 222211   124555555


Q ss_pred             Ecceeee----eecCCCCCeeEEEEecc
Q 014227          240 YSGKDIK----LHVGNVPQLVDVVIHGA  263 (428)
Q Consensus       240 ~~~~~~~----~~~~~~p~L~~l~l~~~  263 (428)
                      +.+..+.    -.+.++++|+.+++..+
T Consensus       107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N  134 (290)
T 1p9a_G          107 VSFNRLTSLPLGALRGLGELQELYLKGN  134 (290)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTS
T ss_pred             CCCCcCcccCHHHHcCCCCCCEEECCCC
Confidence            5544321    11334445555554433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.87  E-value=6.5e-05  Score=79.48  Aligned_cols=76  Identities=14%  Similarity=0.083  Sum_probs=35.9

Q ss_pred             CCcceEEEcceee----eeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccE
Q 014227          233 SSLVSFRYSGKDI----KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLH  307 (428)
Q Consensus       233 p~L~~L~~~~~~~----~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~  307 (428)
                      ++|+.|++.+...    +..+..+++|+.+++..+.......  ..+ ..+++|+.|+++.+........ ...+++|+.
T Consensus       266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  342 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD--EAF-YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY  342 (844)
T ss_dssp             SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT--TTT-TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred             CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh--HHh-cCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence            4566666655432    1234556666666665554332100  112 5556666666655533211111 344455555


Q ss_pred             EEEE
Q 014227          308 LKLT  311 (428)
Q Consensus       308 L~l~  311 (428)
                      |++.
T Consensus       343 L~L~  346 (844)
T 3j0a_A          343 IDLQ  346 (844)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            5553

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.87  E-value=1e-05  Score=73.09  Aligned_cols=124  Identities=18%  Similarity=0.109  Sum_probs=58.4

Q ss_pred             CCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEEECCCcceEEE
Q 014227          161 SGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRY  240 (428)
Q Consensus       161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~  240 (428)
                      ..+++|+.|+|.+..+.+-.-   +.++++|+.|.+.++.....-.+..  ++|+.|+++++. +..+            
T Consensus        60 ~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~-l~~~------------  121 (263)
T 1xeu_A           60 QFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNE-LRDT------------  121 (263)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSC-CSBS------------
T ss_pred             hhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCc-cCCC------------
Confidence            345666666666655443211   5556666666665553211101111  344444444432 1110            


Q ss_pred             cceeeeeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeec
Q 014227          241 SGKDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITE  314 (428)
Q Consensus       241 ~~~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  314 (428)
                            -.+..+++|+.+++..+...++.    .+ ..+++|+.|.++.+..... -....+++|+.|++..+.
T Consensus       122 ------~~l~~l~~L~~L~Ls~N~i~~~~----~l-~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          122 ------DSLIHLKNLEILSIRNNKLKSIV----ML-GFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             ------GGGTTCTTCCEEECTTSCCCBCG----GG-GGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred             ------hhhcCcccccEEECCCCcCCCCh----HH-ccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence                  12445566666666544433321    12 5566666666665543322 225556666666665543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.86  E-value=3.1e-06  Score=76.98  Aligned_cols=176  Identities=15%  Similarity=0.103  Sum_probs=105.6

Q ss_pred             CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceee-EEecCCCCcceEEeeecCCcceE---E-EECCC
Q 014227          160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSL-KVVGSSIPLKYLDIHYCYSMKEI---E-ISASS  234 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i---~-i~ap~  234 (428)
                      +.++++|++|+|.+..+.+-. ...+.++++|+.|.|.++...... ..-..+++|+.|.+.++.. ..+   . -..++
T Consensus        48 ~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~  125 (276)
T 2z62_A           48 FFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKT  125 (276)
T ss_dssp             TTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCC-CCSTTCCCTTCTT
T ss_pred             hccccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCc-cccCchhcccCCC
Confidence            557899999999888654311 113677899999999887632211 1112457889998887752 211   1 13478


Q ss_pred             cceEEEcceee-----eeecCCCCCeeEEEEeccCcchhh-HHHhhccccCCcce-eEEeeeeeeeecccCCCCCCCccE
Q 014227          235 LVSFRYSGKDI-----KLHVGNVPQLVDVVIHGAPLFQVR-YFIGLVVCCFPQLK-TLDLECCNEVFMEFGHWELPKLLH  307 (428)
Q Consensus       235 L~~L~~~~~~~-----~~~~~~~p~L~~l~l~~~~~~~~~-~~~~l~~~~~~~l~-~L~l~~~~~~~~~~~~~~~~~L~~  307 (428)
                      |+.|.+.+...     +..+.++++|+.+++..+....+. ..+.-+ ..++.+. .|+++...............+|++
T Consensus       126 L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~  204 (276)
T 2z62_A          126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL-HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKE  204 (276)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH-HTCTTCCEEEECCSSCCCEECTTSSCSCCEEE
T ss_pred             CCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhh-hhccccceeeecCCCcccccCccccCCCcccE
Confidence            99998876643     234667899999999876654311 111111 3333333 677766644332222333447888


Q ss_pred             EEEEeecCCCCchhHHHHHHHhCCCccEEEEEEec
Q 014227          308 LKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWN  342 (428)
Q Consensus       308 L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~  342 (428)
                      |++..+......    ..++..+++|+.|++...+
T Consensus       205 L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          205 LALDTNQLKSVP----DGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             EECCSSCCSCCC----TTTTTTCCSCCEEECCSSC
T ss_pred             EECCCCceeecC----HhHhcccccccEEEccCCc
Confidence            888554322211    2345778999999887543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.86  E-value=1.2e-06  Score=73.44  Aligned_cols=63  Identities=5%  Similarity=0.034  Sum_probs=49.8

Q ss_pred             CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEec--C----CCCcceEEeeecCCcc
Q 014227          163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVG--S----SIPLKYLDIHYCYSMK  226 (428)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~--~----~~~L~~L~l~~c~~l~  226 (428)
                      -.+|+.|+|+++.+++..+..+ .+|++|+.|.|.+|..+++-.+..  .    +++|++|++++|..++
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT  128 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT  128 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred             CceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence            4589999999999999888774 899999999999998776432221  1    2479999999998544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.85  E-value=1.7e-06  Score=88.66  Aligned_cols=174  Identities=14%  Similarity=0.115  Sum_probs=101.6

Q ss_pred             CCCCCCCCcccceEEeeeEEeehHHHHHHHhcCCc-ccceeecccCCceeeEEec--CCCCcceEEeeecCCcce----E
Q 014227          156 RGHGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPH-LEHLYVANSSELLSLKVVG--SSIPLKYLDIHYCYSMKE----I  228 (428)
Q Consensus       156 lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~-Le~L~L~~~~~~~~l~i~~--~~~~L~~L~l~~c~~l~~----i  228 (428)
                      +| .+..+++|+.|+|.+..+.  .+..-+.+++. |+.|.+.++..........  .+++|+.|+++++.-...    +
T Consensus       346 ip-~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l  422 (636)
T 4eco_A          346 LP-AFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF  422 (636)
T ss_dssp             CC-CCEEEEEESEEECCSSEEE--ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSS
T ss_pred             hh-hhCCCCCCCEEECCCCccc--cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhh
Confidence            45 6778899999999998876  33333778888 9999999886432111111  124788888888762111    1


Q ss_pred             E------EECCCcceEEEcceeee-e---ecCCCCCeeEEEEeccCcchhhH-HH-hh---ccccCCcceeEEeeeeeee
Q 014227          229 E------ISASSLVSFRYSGKDIK-L---HVGNVPQLVDVVIHGAPLFQVRY-FI-GL---VVCCFPQLKTLDLECCNEV  293 (428)
Q Consensus       229 ~------i~ap~L~~L~~~~~~~~-~---~~~~~p~L~~l~l~~~~~~~~~~-~~-~l---~~~~~~~l~~L~l~~~~~~  293 (428)
                      .      ...++|+.|.+.+..+. +   .+..+++|+.+++..+....+.. .+ ..   . ..+++|+.|+++.+...
T Consensus       423 ~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~-~~l~~L~~L~Ls~N~l~  501 (636)
T 4eco_A          423 DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF-KNTYLLTSIDLRFNKLT  501 (636)
T ss_dssp             CTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEEC-TTGGGCCEEECCSSCCC
T ss_pred             cccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccc-cccCCccEEECcCCcCC
Confidence            1      13457888887766442 1   12347788888886654432110 00 00   0 12237788888776544


Q ss_pred             ecccC--CC--CCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEE
Q 014227          294 FMEFG--HW--ELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKI  340 (428)
Q Consensus       294 ~~~~~--~~--~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~  340 (428)
                        .+|  ..  .+++|++|+|..+....     +..-+..+++|+.|++..
T Consensus       502 --~lp~~~~~~~l~~L~~L~Ls~N~l~~-----ip~~~~~l~~L~~L~Ls~  545 (636)
T 4eco_A          502 --KLSDDFRATTLPYLVGIDLSYNSFSK-----FPTQPLNSSTLKGFGIRN  545 (636)
T ss_dssp             --BCCGGGSTTTCTTCCEEECCSSCCSS-----CCCGGGGCSSCCEEECCS
T ss_pred             --ccChhhhhccCCCcCEEECCCCCCCC-----cChhhhcCCCCCEEECCC
Confidence              333  32  67778887774432221     223345677888877753

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.84  E-value=7.3e-06  Score=76.60  Aligned_cols=169  Identities=17%  Similarity=0.086  Sum_probs=101.9

Q ss_pred             CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceee-EEecCCCCcceEEeeecCCcceEEEE-CCCcceEEE
Q 014227          163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSL-KVVGSSIPLKYLDIHYCYSMKEIEIS-ASSLVSFRY  240 (428)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~i~-ap~L~~L~~  240 (428)
                      .++|+.|+|.+..+.+-.- ..+.++++|+.|.|.++...... ..-..+++|+.|+++++. +..+... .++|+.|.+
T Consensus        51 ~~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~~L~~L~l  128 (330)
T 1xku_A           51 PPDTALLDLQNNKITEIKD-GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMPKTLQELRV  128 (330)
T ss_dssp             CTTCCEEECCSSCCCCBCT-TTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCCTTCCEEEC
T ss_pred             CCCCeEEECCCCcCCEeCh-hhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhcccccEEEC
Confidence            4799999999987654211 13678999999999988643210 111246899999999886 3333211 278999998


Q ss_pred             cceeee----eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecCC
Q 014227          241 SGKDIK----LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPN  316 (428)
Q Consensus       241 ~~~~~~----~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  316 (428)
                      .+....    ..+.++++|+.+++..+.....+.....+ ..+++|+.|.++.+...  .++...+++|++|++..+...
T Consensus       129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~l~~L~~L~l~~n~l~--~l~~~~~~~L~~L~l~~n~l~  205 (330)
T 1xku_A          129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF-QGMKKLSYIRIADTNIT--TIPQGLPPSLTELHLDGNKIT  205 (330)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGG-GGCTTCCEEECCSSCCC--SCCSSCCTTCSEEECTTSCCC
T ss_pred             CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhc-cCCCCcCEEECCCCccc--cCCccccccCCEEECCCCcCC
Confidence            876442    13678899999999776553211101223 67888888888766432  223223356666666332211


Q ss_pred             CCchhHHHHHHHhCCCccEEEEEE
Q 014227          317 CESLLGLSFVLKACPFLQKLVIKI  340 (428)
Q Consensus       317 ~~~~~~l~~lL~~~P~L~~L~i~~  340 (428)
                      ...    ...+..+++|+.|++..
T Consensus       206 ~~~----~~~~~~l~~L~~L~Ls~  225 (330)
T 1xku_A          206 KVD----AASLKGLNNLAKLGLSF  225 (330)
T ss_dssp             EEC----TGGGTTCTTCCEEECCS
T ss_pred             ccC----HHHhcCCCCCCEEECCC
Confidence            110    12234566666666653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=97.81  E-value=1.2e-05  Score=69.07  Aligned_cols=141  Identities=17%  Similarity=0.180  Sum_probs=78.6

Q ss_pred             CCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcce--E-E-EECCCcc
Q 014227          161 SGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKE--I-E-ISASSLV  236 (428)
Q Consensus       161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~--i-~-i~ap~L~  236 (428)
                      ..+++|+.|++.+..+.+-.   -+..+++|+.|.+.+|. +..+..-..+++|+.|++.++.- ..  . . -..|+|+
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~l~~n~-~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT---GIEYAHNIKDLTINNIH-ATNYNPISGLSNLERLRIMGKDV-TSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT---TGGGCTTCSEEEEESCC-CSCCGGGTTCTTCCEEEEECTTC-BGGGSCCCTTCTTCC
T ss_pred             hhcCCccEEeccCCCccChH---HHhcCCCCCEEEccCCC-CCcchhhhcCCCCCEEEeECCcc-CcccChhhcCCCCCC
Confidence            35789999999988776311   27788899999998883 33332223456777777777652 11  0 0 1235666


Q ss_pred             eEEEcceeee----eecCCCCCeeEEEEeccC-cchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEE
Q 014227          237 SFRYSGKDIK----LHVGNVPQLVDVVIHGAP-LFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLT  311 (428)
Q Consensus       237 ~L~~~~~~~~----~~~~~~p~L~~l~l~~~~-~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  311 (428)
                      .|.+.+..+.    -.+..+++|+.+++..+. ..++.    .+ ..+++|+.|.++.+...... +...+++|++|++.
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~----~l-~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~  189 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM----PL-KTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAF  189 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG----GG-GGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEEC
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH----hh-cCCCCCCEEECCCCCCcChH-HhccCCCCCEEEee
Confidence            6666554321    124456666666665544 32221    12 55666666666555332211 34555666666663


Q ss_pred             e
Q 014227          312 I  312 (428)
Q Consensus       312 ~  312 (428)
                      .
T Consensus       190 ~  190 (197)
T 4ezg_A          190 S  190 (197)
T ss_dssp             B
T ss_pred             C
Confidence            3

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.80  E-value=2.6e-06  Score=87.95  Aligned_cols=35  Identities=29%  Similarity=0.130  Sum_probs=16.8

Q ss_pred             ccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEE
Q 014227          277 CCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLT  311 (428)
Q Consensus       277 ~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~  311 (428)
                      ..+++|+.|+++.+........ ...+++|+.|++.
T Consensus       477 ~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls  512 (680)
T 1ziw_A          477 QPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQ  512 (680)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             ccCCCCCEEECCCCCCCcCChhhhccccccCEEeCC
Confidence            4555666666655433211111 3445566666663

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.80  E-value=3.9e-06  Score=78.54  Aligned_cols=80  Identities=19%  Similarity=0.254  Sum_probs=41.3

Q ss_pred             CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEE----EECCCc
Q 014227          160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIE----ISASSL  235 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~----i~ap~L  235 (428)
                      +.++++|++|+|.++.+.+-. ...+.++++|+.|.+.++... .+... ..++|++|++.++. +..+.    -..++|
T Consensus        74 ~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~-~l~~~-~~~~L~~L~l~~n~-i~~~~~~~~~~l~~L  149 (332)
T 2ft3_A           74 FKGLQHLYALVLVNNKISKIH-EKAFSPLRKLQKLYISKNHLV-EIPPN-LPSSLVELRIHDNR-IRKVPKGVFSGLRNM  149 (332)
T ss_dssp             TTTCTTCCEEECCSSCCCEEC-GGGSTTCTTCCEEECCSSCCC-SCCSS-CCTTCCEEECCSSC-CCCCCSGGGSSCSSC
T ss_pred             hhCCCCCcEEECCCCccCccC-HhHhhCcCCCCEEECCCCcCC-ccCcc-ccccCCEEECCCCc-cCccCHhHhCCCccC
Confidence            456777777777776543211 112566777777777766422 11111 11566666666654 22221    123556


Q ss_pred             ceEEEcce
Q 014227          236 VSFRYSGK  243 (428)
Q Consensus       236 ~~L~~~~~  243 (428)
                      +.|.+.+.
T Consensus       150 ~~L~l~~n  157 (332)
T 2ft3_A          150 NCIEMGGN  157 (332)
T ss_dssp             CEEECCSC
T ss_pred             CEEECCCC
Confidence            66665544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.79  E-value=4.9e-06  Score=77.86  Aligned_cols=102  Identities=22%  Similarity=0.126  Sum_probs=70.3

Q ss_pred             CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceee-EEecCCCCcceEEeeecCCcceEEEE-CCCcceEEE
Q 014227          163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSL-KVVGSSIPLKYLDIHYCYSMKEIEIS-ASSLVSFRY  240 (428)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~i~-ap~L~~L~~  240 (428)
                      +++|+.|+|.+..+.+-. ...+.++++|+.|.|.++...... ..-..+++|+.|++.++. +..+... .++|++|++
T Consensus        53 ~~~l~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~L~~L~l  130 (332)
T 2ft3_A           53 SPDTTLLDLQNNDISELR-KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLPSSLVELRI  130 (332)
T ss_dssp             CTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCCTTCCEEEC
T ss_pred             CCCCeEEECCCCcCCccC-HhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCccccccCCEEEC
Confidence            579999999988754311 113688999999999998643210 112356899999999886 3333211 279999999


Q ss_pred             cceeee----eecCCCCCeeEEEEeccCcc
Q 014227          241 SGKDIK----LHVGNVPQLVDVVIHGAPLF  266 (428)
Q Consensus       241 ~~~~~~----~~~~~~p~L~~l~l~~~~~~  266 (428)
                      .+....    ..+.++++|+.+++......
T Consensus       131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A          131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             CSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred             CCCccCccCHhHhCCCccCCEEECCCCccc
Confidence            877442    23678999999999776553

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.78  E-value=2.4e-05  Score=79.45  Aligned_cols=114  Identities=14%  Similarity=0.040  Sum_probs=56.4

Q ss_pred             CCcceEEeeecCCcceEEEECCCcceEEEcceeeeeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeee
Q 014227          212 IPLKYLDIHYCYSMKEIEISASSLVSFRYSGKDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCN  291 (428)
Q Consensus       212 ~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~  291 (428)
                      ++|+.|+++++. +..+.-..++|+.|.+.+..+...-...++|+.+++..+...      .+. ..+++|+.|+++.+.
T Consensus       181 ~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~------~lp-~~l~~L~~L~Ls~N~  252 (622)
T 3g06_A          181 SGLQELSVSDNQ-LASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT------SLP-VLPSELKELMVSGNR  252 (622)
T ss_dssp             TTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS------CCC-CCCTTCCEEECCSSC
T ss_pred             CCCcEEECCCCC-CCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccC------cCC-CCCCcCcEEECCCCC
Confidence            444444444443 222222234555555544433211122355666666544333      233 456677777776653


Q ss_pred             eeecccCCCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227          292 EVFMEFGHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIW  341 (428)
Q Consensus       292 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~  341 (428)
                      +.  .+|. .+++|++|+|..+...     .+..-+..+|+|+.|++...
T Consensus       253 L~--~lp~-~~~~L~~L~Ls~N~L~-----~lp~~l~~l~~L~~L~L~~N  294 (622)
T 3g06_A          253 LT--SLPM-LPSGLLSLSVYRNQLT-----RLPESLIHLSSETTVNLEGN  294 (622)
T ss_dssp             CS--CCCC-CCTTCCEEECCSSCCC-----SCCGGGGGSCTTCEEECCSC
T ss_pred             CC--cCCc-ccccCcEEeCCCCCCC-----cCCHHHhhccccCEEEecCC
Confidence            32  2222 5567777777443222     12233567788888887654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.75  E-value=2.4e-06  Score=79.21  Aligned_cols=218  Identities=13%  Similarity=0.100  Sum_probs=111.7

Q ss_pred             cccceEEeeeEEeehHHHHHHHh--cCCcccceeecccCCceeeEEe---cCCCCcceEEeeecCCcce------E-EEE
Q 014227          164 KSLRSLCLNALKVSGEVLEFFIH--SCPHLEHLYVANSSELLSLKVV---GSSIPLKYLDIHYCYSMKE------I-EIS  231 (428)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~--~cp~Le~L~L~~~~~~~~l~i~---~~~~~L~~L~l~~c~~l~~------i-~i~  231 (428)
                      ..++.|.+..+.+.+..+..+..  .++.|+.|.+.+|...+.....   ..+++|+.|+++++.--..      . ...
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            45677777777776655444332  3456788887777533221111   3346777777777652110      0 013


Q ss_pred             CCCcceEEEcceeee----eecCCCCCeeEEEEeccCcchhhHHH--hhccccCCcceeEEeeeeeeeecc-cC---CCC
Q 014227          232 ASSLVSFRYSGKDIK----LHVGNVPQLVDVVIHGAPLFQVRYFI--GLVVCCFPQLKTLDLECCNEVFME-FG---HWE  301 (428)
Q Consensus       232 ap~L~~L~~~~~~~~----~~~~~~p~L~~l~l~~~~~~~~~~~~--~l~~~~~~~l~~L~l~~~~~~~~~-~~---~~~  301 (428)
                      .++|++|++.+..+.    -.+..+++|+.+++..+.......+.  ... ..+++|+.|.++.+...... .+   ...
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~  222 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP-HKFPAIQNLALRNTGMETPTGVCAALAAA  222 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT-TSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh-hcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence            567777777665431    23456777887777666533211111  112 56777777777766443111 11   234


Q ss_pred             CCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCcCccCCccEEEEeeeeeCCchHHHHH
Q 014227          302 LPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVHLHQHLKVVELHEFRWLQIDPEIAF  381 (428)
Q Consensus       302 ~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~~~~~~L~~v~i~~f~g~~~e~~~~~  381 (428)
                      +++|++|+|+.+.........+ .-+...|+|+.|+++...       ... +|.....+|+.+.+.+-+-..-.     
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~-~~~~~~~~L~~L~Ls~N~-------l~~-lp~~~~~~L~~L~Ls~N~l~~~~-----  288 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSA-PRCMWSSALNSLNLSFAG-------LEQ-VPKGLPAKLRVLDLSSNRLNRAP-----  288 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCC-SSCCCCTTCCCEECCSSC-------CCS-CCSCCCSCCSCEECCSCCCCSCC-----
T ss_pred             CCCCCEEECCCCCCCccchhhH-HhccCcCcCCEEECCCCC-------CCc-hhhhhcCCCCEEECCCCcCCCCc-----
Confidence            5677777774443222100000 001122677877775432       111 45555567777776642211100     


Q ss_pred             HHHhcccccccEEEec
Q 014227          382 FIFRNAKVLEKMIIKP  397 (428)
Q Consensus       382 ~ll~~a~~L~~l~i~~  397 (428)
                       .+...+.|+.+.+..
T Consensus       289 -~~~~l~~L~~L~L~~  303 (310)
T 4glp_A          289 -QPDELPEVDNLTLDG  303 (310)
T ss_dssp             -CTTSCCCCSCEECSS
T ss_pred             -hhhhCCCccEEECcC
Confidence             024557777776653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.75  E-value=4.1e-06  Score=70.04  Aligned_cols=126  Identities=18%  Similarity=0.183  Sum_probs=58.9

Q ss_pred             CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEE---EECCCcceEE
Q 014227          163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIE---ISASSLVSFR  239 (428)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~---i~ap~L~~L~  239 (428)
                      .++|+.|+|.++.+.+..+...+..+++|+.|.+.+|.. ..+..-..+++|+.|+++++.--..+.   -..|+|+.|+
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-ISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCC-CCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCC-CChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            466777777766665333444456666777777766652 222222234566666666654211111   0135555555


Q ss_pred             Ecceeee-----eecCCCCCeeEEEEeccCcchhhHH-HhhccccCCcceeEEeeee
Q 014227          240 YSGKDIK-----LHVGNVPQLVDVVIHGAPLFQVRYF-IGLVVCCFPQLKTLDLECC  290 (428)
Q Consensus       240 ~~~~~~~-----~~~~~~p~L~~l~l~~~~~~~~~~~-~~l~~~~~~~l~~L~l~~~  290 (428)
                      +.+..+.     -.+..+++|+.+++..+........ ...+ ..+++|+.|+++.+
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~-~~l~~L~~L~l~~n  157 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVF-KLLPQLTYLDGYDR  157 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHH-TTCSSCCEETTEET
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHH-HhCccCcEecCCCC
Confidence            5444221     1233455555555544433321110 0112 44555555555443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.74  E-value=1.3e-05  Score=73.55  Aligned_cols=165  Identities=18%  Similarity=0.163  Sum_probs=107.2

Q ss_pred             CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEE----ECCCc
Q 014227          160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEI----SASSL  235 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i----~ap~L  235 (428)
                      +.++++|+.|+|.+..+..-..   ...+++|+.|.+.++...........+++|+.|.++++. +..+..    ..++|
T Consensus        51 ~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L  126 (290)
T 1p9a_G           51 LMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGEL  126 (290)
T ss_dssp             GTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTC
T ss_pred             hhcCCCCCEEECCCCccCcccC---CCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCC
Confidence            4578999999999887543211   267899999999987643221222356889999998875 333321    24789


Q ss_pred             ceEEEcceeee-e---ecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEE
Q 014227          236 VSFRYSGKDIK-L---HVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLT  311 (428)
Q Consensus       236 ~~L~~~~~~~~-~---~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  311 (428)
                      +.|.+.+..+. +   .+..+++|+.+++..+....+..  ..+ ..+++|+.|.++.+.............+|++|.|.
T Consensus       127 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~--~~~-~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~  203 (290)
T 1p9a_G          127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA--GLL-NGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH  203 (290)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT--TTT-TTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECC
T ss_pred             CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH--HHh-cCcCCCCEEECCCCcCCccChhhcccccCCeEEeC
Confidence            99998877542 2   24578899999997665543211  223 67899999999887554221125556789999986


Q ss_pred             eecCCC-CchhHHHHHHHhCC
Q 014227          312 ITEPNC-ESLLGLSFVLKACP  331 (428)
Q Consensus       312 ~~~~~~-~~~~~l~~lL~~~P  331 (428)
                      .+...+ .+..++...++.-+
T Consensus       204 ~Np~~C~c~~~~l~~wl~~~~  224 (290)
T 1p9a_G          204 GNPWLCNCEILYFRRWLQDNA  224 (290)
T ss_dssp             SCCBCCSGGGHHHHHHHHHTG
T ss_pred             CCCccCcCccHHHHHHHHhCc
Confidence            653332 34555666666544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.71  E-value=9.6e-06  Score=83.65  Aligned_cols=176  Identities=15%  Similarity=0.109  Sum_probs=86.4

Q ss_pred             CCCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceee-EEecCCCCcceEEeeecCC--cceE---EEE
Q 014227          158 HGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSL-KVVGSSIPLKYLDIHYCYS--MKEI---EIS  231 (428)
Q Consensus       158 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~--l~~i---~i~  231 (428)
                      ..+..+++|+.|+|.+..+.+......+.++++|+.|.+.+|...... ..-..+++|+.|.+.++..  ...+   .-.
T Consensus       399 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~  478 (680)
T 1ziw_A          399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP  478 (680)
T ss_dssp             TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT
T ss_pred             hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccccc
Confidence            345567777777777765533211122566777777777776521100 0001245666666665531  0000   012


Q ss_pred             CCCcceEEEcceeee-e---ecCCCCCeeEEEEeccCcchhhHH------HhhccccCCcceeEEeeeeeeeecccC---
Q 014227          232 ASSLVSFRYSGKDIK-L---HVGNVPQLVDVVIHGAPLFQVRYF------IGLVVCCFPQLKTLDLECCNEVFMEFG---  298 (428)
Q Consensus       232 ap~L~~L~~~~~~~~-~---~~~~~p~L~~l~l~~~~~~~~~~~------~~l~~~~~~~l~~L~l~~~~~~~~~~~---  298 (428)
                      .++|+.|++.+.... +   .+.++++|+.+++..+....+...      ...+ ..+++|+.|+++.+...  .++   
T Consensus       479 l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~-~~l~~L~~L~L~~N~l~--~i~~~~  555 (680)
T 1ziw_A          479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFL-KGLSHLHILNLESNGFD--EIPVEV  555 (680)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTT-TTCTTCCEEECCSSCCC--CCCTTT
T ss_pred             CCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhh-cCCCCCCEEECCCCCCC--CCCHHH
Confidence            356777776655331 1   245667777777765544321100      0112 56667777777665433  222   


Q ss_pred             CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEE
Q 014227          299 HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKI  340 (428)
Q Consensus       299 ~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~  340 (428)
                      +..+++|+.|++..+.-....    ...+..+++|+.|+++.
T Consensus       556 ~~~l~~L~~L~Ls~N~l~~l~----~~~~~~l~~L~~L~L~~  593 (680)
T 1ziw_A          556 FKDLFELKIIDLGLNNLNTLP----ASVFNNQVSLKSLNLQK  593 (680)
T ss_dssp             TTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECTT
T ss_pred             cccccCcceeECCCCCCCcCC----HhHhCCCCCCCEEECCC
Confidence            445566666666333221111    12234556666666643

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.67  E-value=4.1e-05  Score=81.05  Aligned_cols=206  Identities=12%  Similarity=0.015  Sum_probs=103.8

Q ss_pred             CCCCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEE------
Q 014227          157 GHGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEI------  230 (428)
Q Consensus       157 p~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i------  230 (428)
                      |..+.++++|+.|+|.+..+..-. ...+.++++|+.|.|.++.... +  . .+++|+.|.+.++. +..+.-      
T Consensus       331 ~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~-i--~-~~~~L~~L~l~~N~-l~~l~~~~~~l~  404 (844)
T 3j0a_A          331 SSNFYGLPKVAYIDLQKNHIAIIQ-DQTFKFLEKLQTLDLRDNALTT-I--H-FIPSIPDIFLSGNK-LVTLPKINLTAN  404 (844)
T ss_dssp             SCSCSSCTTCCEEECCSCCCCCCC-SSCSCSCCCCCEEEEETCCSCC-C--S-SCCSCSEEEEESCC-CCCCCCCCTTCC
T ss_pred             HHHhcCCCCCCEEECCCCCCCccC-hhhhcCCCCCCEEECCCCCCCc-c--c-CCCCcchhccCCCC-cccccccccccc
Confidence            445678899999999887653311 1125678899999998875322 1  1 13677777777664 222211      


Q ss_pred             -------------------ECCCcceEEEcceeee-----eecCCCCCeeEEEEeccCcchhh--HH-HhhccccCCcce
Q 014227          231 -------------------SASSLVSFRYSGKDIK-----LHVGNVPQLVDVVIHGAPLFQVR--YF-IGLVVCCFPQLK  283 (428)
Q Consensus       231 -------------------~ap~L~~L~~~~~~~~-----~~~~~~p~L~~l~l~~~~~~~~~--~~-~~l~~~~~~~l~  283 (428)
                                         ..|+|+.|++.+....     .....+++|+.+++..+......  .. ...+ .++++|+
T Consensus       405 ~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~-~~l~~L~  483 (844)
T 3j0a_A          405 LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF-EGLSHLQ  483 (844)
T ss_dssp             EEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCS-SCBCCEE
T ss_pred             eeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhh-cCccccc
Confidence                               2345555555443221     11223455555555443322100  00 0112 4556666


Q ss_pred             eEEeeeeeeeecccC-CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCcCccCCc
Q 014227          284 TLDLECCNEVFMEFG-HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVHLHQHL  362 (428)
Q Consensus       284 ~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~~~~~~L  362 (428)
                      .|+++.+........ ...+++|++|+|+.+.-.......+      .++|+.|+++...       ... .++....+|
T Consensus       484 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~------~~~L~~L~Ls~N~-------l~~-~~~~~~~~L  549 (844)
T 3j0a_A          484 VLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL------PANLEILDISRNQ-------LLA-PNPDVFVSL  549 (844)
T ss_dssp             CCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCC------CSCCCEEEEEEEC-------CCC-CCSCCCSSC
T ss_pred             EEECCCCcccccChhHccchhhhheeECCCCCCCccChhhh------hccccEEECCCCc-------CCC-CChhHhCCc
Confidence            666655533211111 4556777777775553322111111      1677777777642       111 222334578


Q ss_pred             cEEEEee--eeeCCchHHHHHHH
Q 014227          363 KVVELHE--FRWLQIDPEIAFFI  383 (428)
Q Consensus       363 ~~v~i~~--f~g~~~e~~~~~~l  383 (428)
                      +.+.+.+  +.+...-..+..++
T Consensus       550 ~~l~l~~Np~~C~c~~~~f~~~~  572 (844)
T 3j0a_A          550 SVLDITHNKFICECELSTFINWL  572 (844)
T ss_dssp             CEEEEEEECCCCSSSCCSHHHHH
T ss_pred             CEEEecCCCcccccccHHHHHHH
Confidence            8888876  44433333444444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.66  E-value=2.7e-05  Score=69.65  Aligned_cols=145  Identities=16%  Similarity=0.111  Sum_probs=74.7

Q ss_pred             cccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeE-EecCCCCcceEEeeecCCcceEE----EECCCcceE
Q 014227          164 KSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLK-VVGSSIPLKYLDIHYCYSMKEIE----ISASSLVSF  238 (428)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~-i~~~~~~L~~L~l~~c~~l~~i~----i~ap~L~~L  238 (428)
                      ++|+.|+|.+..+.+-.- ..+.++++|+.|.|.++....... .-..+++|+.|++.++. +..+.    -..++|+.|
T Consensus        35 ~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L  112 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSD-ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKL  112 (251)
T ss_dssp             TTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEEccCCCcCccCH-hHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCEE
Confidence            577777777766543211 125567777777777764322110 01134566677666654 22221    123566666


Q ss_pred             EEcceeee-e---ecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEEee
Q 014227          239 RYSGKDIK-L---HVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLTIT  313 (428)
Q Consensus       239 ~~~~~~~~-~---~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~  313 (428)
                      .+.+..+. +   .+..+++|+.+++..+....+..  ..+ ..+++|+.|+++.+........ ...+++|++|.|..+
T Consensus       113 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  189 (251)
T 3m19_A          113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA--GAF-DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN  189 (251)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTT-TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             EcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH--HHc-CcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence            66554331 1   13456667777665554432111  112 5667777777766643322111 445667777777554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.63  E-value=9.2e-05  Score=72.40  Aligned_cols=133  Identities=15%  Similarity=0.077  Sum_probs=55.5

Q ss_pred             cccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEE--EECCCcceEEEc
Q 014227          164 KSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIE--ISASSLVSFRYS  241 (428)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~L~~~  241 (428)
                      ++|++|+|.++.+.+  +.. +.++++|+.|++.++...+   ++...++|+.|++.++. +..+.  -..++|+.|.+.
T Consensus       131 ~~L~~L~L~~n~l~~--lp~-~~~l~~L~~L~l~~N~l~~---lp~~~~~L~~L~L~~n~-l~~l~~~~~l~~L~~L~l~  203 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK--LPE-LQNSSFLKIIDVDNNSLKK---LPDLPPSLEFIAAGNNQ-LEELPELQNLPFLTAIYAD  203 (454)
T ss_dssp             TTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCCSC---CCCCCTTCCEEECCSSC-CSSCCCCTTCTTCCEEECC
T ss_pred             CCCCEEECcCCCCCC--Ccc-cCCCCCCCEEECCCCcCcc---cCCCcccccEEECcCCc-CCcCccccCCCCCCEEECC
Confidence            455555555554432  111 4455555555555543211   11122455555555543 12111  113455555554


Q ss_pred             ceeeeeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEE
Q 014227          242 GKDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLT  311 (428)
Q Consensus       242 ~~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  311 (428)
                      +....-.-...++|+.+++..+....+.   . + ..+++|+.|+++.+....  ++ ..+++|++|++.
T Consensus       204 ~N~l~~l~~~~~~L~~L~l~~n~l~~lp---~-~-~~l~~L~~L~l~~N~l~~--l~-~~~~~L~~L~l~  265 (454)
T 1jl5_A          204 NNSLKKLPDLPLSLESIVAGNNILEELP---E-L-QNLPFLTTIYADNNLLKT--LP-DLPPSLEALNVR  265 (454)
T ss_dssp             SSCCSSCCCCCTTCCEEECCSSCCSSCC---C-C-TTCTTCCEEECCSSCCSS--CC-SCCTTCCEEECC
T ss_pred             CCcCCcCCCCcCcccEEECcCCcCCccc---c-c-CCCCCCCEEECCCCcCCc--cc-ccccccCEEECC
Confidence            4432110011234555555443322211   1 1 455666666665543221  11 123566666663

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.55  E-value=4.3e-06  Score=68.33  Aligned_cols=60  Identities=18%  Similarity=0.125  Sum_probs=34.0

Q ss_pred             CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecC
Q 014227          163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCY  223 (428)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~  223 (428)
                      +++|+.|++.++.+.+..+...+..+++|+.|.+.+|.... +..-..+++|+.|+++++.
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~Ls~n~   75 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-IANLPKLNKLKKLELSDNR   75 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-CTTCCCCTTCCEEECCSSC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-chhhhcCCCCCEEECCCCc
Confidence            46777777777766533333445667777777777664322 2111234566666666554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.55  E-value=1e-05  Score=76.94  Aligned_cols=166  Identities=14%  Similarity=0.095  Sum_probs=85.4

Q ss_pred             CcccceEEeeeEEeehHH---HHHHHh-cCCcccceeecccCCce--eeEEecCCCCcceEEeeecCCcceEEEECCCcc
Q 014227          163 IKSLRSLCLNALKVSGEV---LEFFIH-SCPHLEHLYVANSSELL--SLKVVGSSIPLKYLDIHYCYSMKEIEISASSLV  236 (428)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~---l~~ll~-~cp~Le~L~L~~~~~~~--~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~  236 (428)
                      .++|+.|+|.++.+.+..   +..++. .++.|+.|+|.+|....  ...+...+++|+.|++++|. +......+  | 
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~--L-  146 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKD--L-  146 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHH--H-
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHH--H-
Confidence            356777777777766543   333333 33577777777764211  00111122455666665554 11000000  0 


Q ss_pred             eEEEcceeeeeecCCCCCeeEEEEeccCcch--hhHHHhhccccCCcceeEEeeeeeeeecc---cC--CCCCCCccEEE
Q 014227          237 SFRYSGKDIKLHVGNVPQLVDVVIHGAPLFQ--VRYFIGLVVCCFPQLKTLDLECCNEVFME---FG--HWELPKLLHLK  309 (428)
Q Consensus       237 ~L~~~~~~~~~~~~~~p~L~~l~l~~~~~~~--~~~~~~l~~~~~~~l~~L~l~~~~~~~~~---~~--~~~~~~L~~L~  309 (428)
                              ........++|+++++..+...+  ...+...+ ...++|++|+++.+......   +.  +...++|++|+
T Consensus       147 --------~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L-~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~  217 (372)
T 3un9_A          147 --------RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL-AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELN  217 (372)
T ss_dssp             --------HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH-HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEE
T ss_pred             --------HHHHHhcCCccceeeCCCCCCChHHHHHHHHHH-hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEE
Confidence                    00000234455556655554433  12222334 66778888888776543321   11  44556888888


Q ss_pred             EEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227          310 LTITEPNCESLLGLSFVLKACPFLQKLVIKIW  341 (428)
Q Consensus       310 l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~  341 (428)
                      |..+..+......+...+..+|+|+.|++...
T Consensus       218 Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N  249 (372)
T 3un9_A          218 VAYNGAGDTAALALARAAREHPSLELLHLYFN  249 (372)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence            85554333334456667778899999988654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.52  E-value=5.2e-05  Score=76.34  Aligned_cols=214  Identities=14%  Similarity=0.080  Sum_probs=109.8

Q ss_pred             CCcccceEEeeeEEeehHHHHHHHh--cCCcccceeecccCCceeeEEe------cCC----------------------
Q 014227          162 GIKSLRSLCLNALKVSGEVLEFFIH--SCPHLEHLYVANSSELLSLKVV------GSS----------------------  211 (428)
Q Consensus       162 ~~~~L~~L~L~~~~~~~~~l~~ll~--~cp~Le~L~L~~~~~~~~l~i~------~~~----------------------  211 (428)
                      ++++|+.|+|.++.+.+..+..+..  ..+.|+.|.+.+|...+.+.-.      ..+                      
T Consensus       247 ~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~  326 (562)
T 3a79_B          247 RGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYS  326 (562)
T ss_dssp             SCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHH
T ss_pred             ccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhh
Confidence            4566666777777776654443322  3458888888877532111000      000                      


Q ss_pred             ----CCcceEEeeecCCcceEE--EECCCcceEEEcceeee----eecCCCCCeeEEEEeccCcchhhHHHhhccccCCc
Q 014227          212 ----IPLKYLDIHYCYSMKEIE--ISASSLVSFRYSGKDIK----LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQ  281 (428)
Q Consensus       212 ----~~L~~L~l~~c~~l~~i~--i~ap~L~~L~~~~~~~~----~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~  281 (428)
                          .+|+.|.+.++.. ..+.  -..++|+.|++.+....    ..+.++++|+.+++..+....+......+ ..+++
T Consensus       327 ~~~~~~L~~L~l~~n~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-~~l~~  404 (562)
T 3a79_B          327 VFAEMNIKMLSISDTPF-IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT-KNMSS  404 (562)
T ss_dssp             HHHTCCCSEEEEESSCC-CCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTT-TTCTT
T ss_pred             hhccCcceEEEccCCCc-ccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhh-cCCCC
Confidence                2355555555431 1111  23467777777765332    23467788888888766554322221223 67788


Q ss_pred             ceeEEeeeeeeeecccC--CCCCCCccEEEEEeecCCCCchhHHHHHHHhC-CCccEEEEEEecCCCCcccccccCCcC-
Q 014227          282 LKTLDLECCNEVFMEFG--HWELPKLLHLKLTITEPNCESLLGLSFVLKAC-PFLQKLVIKIWNNNRTIGEKRHQIPVH-  357 (428)
Q Consensus       282 l~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~-P~L~~L~i~~~~~~~~~~~~~~~~p~~-  357 (428)
                      |+.|+++.+......-+  ...+++|++|++..+....       .+.... ++|+.|+++...       ... +|.. 
T Consensus       405 L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~l~~~L~~L~L~~N~-------l~~-ip~~~  469 (562)
T 3a79_B          405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG-------SVFRCLPPKVKVLDLHNNR-------IMS-IPKDV  469 (562)
T ss_dssp             CCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG-------GGGSSCCTTCSEEECCSSC-------CCC-CCTTT
T ss_pred             CCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc-------chhhhhcCcCCEEECCCCc-------Ccc-cChhh
Confidence            88888876644321111  4456777777774432211       112233 577777776432       111 3322 


Q ss_pred             -ccCCccEEEEeeee--eCCchHHHHHHHHhcccccccEEEecC
Q 014227          358 -LHQHLKVVELHEFR--WLQIDPEIAFFIFRNAKVLEKMIIKPS  398 (428)
Q Consensus       358 -~~~~L~~v~i~~f~--g~~~e~~~~~~ll~~a~~L~~l~i~~~  398 (428)
                       -..+|+.+.+.+-+  ....+      .+.+.+.|+.+.+...
T Consensus       470 ~~l~~L~~L~L~~N~l~~l~~~------~~~~l~~L~~L~l~~N  507 (562)
T 3a79_B          470 THLQALQELNVASNQLKSVPDG------VFDRLTSLQYIWLHDN  507 (562)
T ss_dssp             TSSCCCSEEECCSSCCCCCCTT------STTTCTTCCCEECCSC
T ss_pred             cCCCCCCEEECCCCCCCCCCHH------HHhcCCCCCEEEecCC
Confidence             23556666665421  11111      2345666776666544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.52  E-value=4e-05  Score=69.15  Aligned_cols=146  Identities=11%  Similarity=0.013  Sum_probs=93.7

Q ss_pred             CCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEEECCCcceEEE
Q 014227          161 SGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRY  240 (428)
Q Consensus       161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~  240 (428)
                      ..+++|+.|++.++.+.+-.   -+..+++|+.|.|.++....... -..+++|+.|+++++. +..+    |       
T Consensus        38 ~~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~-l~~l----~-------  101 (263)
T 1xeu_A           38 KELSGVQNFNGDNSNIQSLA---GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR-LKNL----N-------  101 (263)
T ss_dssp             HHHTTCSEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC-CSCC----T-------
T ss_pred             hhcCcCcEEECcCCCcccch---HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc-cCCc----C-------
Confidence            45789999999888765422   26778899999998875322111 2345677777777664 1111    0       


Q ss_pred             cceeeeeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecCCCCch
Q 014227          241 SGKDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNCESL  320 (428)
Q Consensus       241 ~~~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  320 (428)
                             .+.. ++|+.+++..+...++.    -+ ..+++|+.|+++.+...... +...+++|++|++..+....  .
T Consensus       102 -------~~~~-~~L~~L~L~~N~l~~~~----~l-~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~--~  165 (263)
T 1xeu_A          102 -------GIPS-ACLSRLFLDNNELRDTD----SL-IHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITN--T  165 (263)
T ss_dssp             -------TCCC-SSCCEEECCSSCCSBSG----GG-TTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCB--C
T ss_pred             -------cccc-CcccEEEccCCccCCCh----hh-cCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcc--h
Confidence                   0111 55666666555444322    12 78999999999887554321 36778999999995443222  1


Q ss_pred             hHHHHHHHhCCCccEEEEEEec
Q 014227          321 LGLSFVLKACPFLQKLVIKIWN  342 (428)
Q Consensus       321 ~~l~~lL~~~P~L~~L~i~~~~  342 (428)
                          ..+..+++|+.|++....
T Consensus       166 ----~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          166 ----GGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             ----TTSTTCCCCCEEEEEEEE
T ss_pred             ----HHhccCCCCCEEeCCCCc
Confidence                446789999999999764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.51  E-value=2.5e-05  Score=76.26  Aligned_cols=38  Identities=18%  Similarity=0.412  Sum_probs=35.7

Q ss_pred             ccccCCCCcHHHHHHHHhcCChHHHHHHHHhhHHHhhh
Q 014227           19 MEDWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYL   56 (428)
Q Consensus        19 ~~D~~s~LPd~iL~~Ils~L~~~d~~~~s~vskrWr~l   56 (428)
                      ..|.++.||+|++.+||+||+.+++++++.|||+|+++
T Consensus        11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~   48 (464)
T 3v7d_B           11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKI   48 (464)
T ss_dssp             CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHH
T ss_pred             ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            36889999999999999999999999999999999875

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.43  E-value=0.00029  Score=70.77  Aligned_cols=61  Identities=20%  Similarity=0.176  Sum_probs=26.1

Q ss_pred             CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecC
Q 014227          160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCY  223 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~  223 (428)
                      +.++++|++|+|.+..+.+-. ...+.++++|+.|+|.++... .+.-. .+++|++|+++++.
T Consensus        72 ~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~l~~L~~L~Ls~N~  132 (562)
T 3a79_B           72 ISFLSELRVLRLSHNRIRSLD-FHVFLFNQDLEYLDVSHNRLQ-NISCC-PMASLRHLDLSFND  132 (562)
T ss_dssp             TTTCTTCCEEECCSCCCCEEC-TTTTTTCTTCCEEECTTSCCC-EECSC-CCTTCSEEECCSSC
T ss_pred             hccCCCccEEECCCCCCCcCC-HHHhCCCCCCCEEECCCCcCC-ccCcc-ccccCCEEECCCCC
Confidence            344555555555555432210 011344555555555554421 11111 33455555555543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.42  E-value=0.00018  Score=59.85  Aligned_cols=132  Identities=16%  Similarity=0.108  Sum_probs=81.3

Q ss_pred             cCCcccceeecccCCc-eee-EEecCCCCcceEEeeecCCcceEEEECCCcceEEEcceeeeeecCCCCCeeEEEEeccC
Q 014227          187 SCPHLEHLYVANSSEL-LSL-KVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRYSGKDIKLHVGNVPQLVDVVIHGAP  264 (428)
Q Consensus       187 ~cp~Le~L~L~~~~~~-~~l-~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~~~~~~~~~~~p~L~~l~l~~~~  264 (428)
                      ..+.|+.|.+.+|... +.+ .....+++|+.|++.+|. +..+                  -.+..+++|+.+++..+.
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~------------------~~~~~l~~L~~L~Ls~N~   82 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV------------------SNLPKLPKLKKLELSENR   82 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC------------------SSCCCCSSCCEEEEESCC
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh------------------hhhccCCCCCEEECcCCc
Confidence            3477899998888632 111 111234667777776665 2221                  123456777777776655


Q ss_pred             cch-hhHHHhhccccCCcceeEEeeeeeeeeccc-C-CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227          265 LFQ-VRYFIGLVVCCFPQLKTLDLECCNEVFMEF-G-HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIW  341 (428)
Q Consensus       265 ~~~-~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~-~-~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~  341 (428)
                      ... +...   . ..+++|+.|+++.+....... . ...+++|++|++..+...... ......+..+|+|+.|++...
T Consensus        83 l~~~~~~~---~-~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A           83 IFGGLDML---A-EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN-DYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             CCSCCCHH---H-HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTST-THHHHHHTTCSSCCEETTEET
T ss_pred             CchHHHHH---H-hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchH-HHHHHHHHhCccCcEecCCCC
Confidence            543 2222   2 678999999998886554321 2 677889999999554322211 112347789999999999876


Q ss_pred             c
Q 014227          342 N  342 (428)
Q Consensus       342 ~  342 (428)
                      .
T Consensus       158 ~  158 (168)
T 2ell_A          158 E  158 (168)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.32  E-value=8.7e-05  Score=60.39  Aligned_cols=128  Identities=17%  Similarity=0.070  Sum_probs=76.6

Q ss_pred             cCCcccceeecccCCc-eee-EEecCCCCcceEEeeecCCcceEEEECCCcceEEEcceeeeeecCCCCCeeEEEEeccC
Q 014227          187 SCPHLEHLYVANSSEL-LSL-KVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRYSGKDIKLHVGNVPQLVDVVIHGAP  264 (428)
Q Consensus       187 ~cp~Le~L~L~~~~~~-~~l-~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~~~~~~~~~~~p~L~~l~l~~~~  264 (428)
                      ..+.|+.|.+.+|... +.+ .....+++|+.|++.+|. +..+                  -.+..+++|+.+++..+.
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~------------------~~~~~l~~L~~L~Ls~n~   75 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI------------------ANLPKLNKLKKLELSDNR   75 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC------------------TTCCCCTTCCEEECCSSC
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc------------------hhhhcCCCCCEEECCCCc
Confidence            3467999999888643 121 111345667777776664 2221                  123456677777776655


Q ss_pred             cch-hhHHHhhccccCCcceeEEeeeeeeeeccc-C-CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEE
Q 014227          265 LFQ-VRYFIGLVVCCFPQLKTLDLECCNEVFMEF-G-HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVI  338 (428)
Q Consensus       265 ~~~-~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~-~-~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i  338 (428)
                      ..+ +...+    ..+++|+.|+++.+....... . ...+++|++|++..+..... .......+..+|+|+.|++
T Consensus        76 i~~~~~~~~----~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           76 VSGGLEVLA----EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL-NDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             CCSCTHHHH----HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGS-TTHHHHHHHHCTTCCEETT
T ss_pred             ccchHHHHh----hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccch-HHHHHHHHHHCCCcccccC
Confidence            543 33222    678899999998876544321 2 67788999998844422111 1111357788999998875

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.32  E-value=0.00013  Score=71.39  Aligned_cols=154  Identities=16%  Similarity=0.100  Sum_probs=96.9

Q ss_pred             CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEEECCCcceEEEcc
Q 014227          163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRYSG  242 (428)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~  242 (428)
                      .++|++|++.++.+..  +.. +.++++|+.|.+.++...+   ++...++|+.|++.++. +..+.-..++|+.|++.+
T Consensus       214 ~~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~l~~N~l~~---l~~~~~~L~~L~l~~N~-l~~l~~~~~~L~~L~ls~  286 (454)
T 1jl5_A          214 PLSLESIVAGNNILEE--LPE-LQNLPFLTTIYADNNLLKT---LPDLPPSLEALNVRDNY-LTDLPELPQSLTFLDVSE  286 (454)
T ss_dssp             CTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCCSS---CCSCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCS
T ss_pred             cCcccEEECcCCcCCc--ccc-cCCCCCCCEEECCCCcCCc---ccccccccCEEECCCCc-ccccCcccCcCCEEECcC
Confidence            4689999999887652  222 6789999999998875432   22233789999998886 343333347888888877


Q ss_pred             eeeeeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecCCCCchhH
Q 014227          243 KDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNCESLLG  322 (428)
Q Consensus       243 ~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  322 (428)
                      ....-.-.-.++|+.+++..+....      +. ...++|+.|+++.+....  +| ..+++|++|++..+....  .. 
T Consensus       287 N~l~~l~~~~~~L~~L~l~~N~l~~------i~-~~~~~L~~L~Ls~N~l~~--lp-~~~~~L~~L~L~~N~l~~--lp-  353 (454)
T 1jl5_A          287 NIFSGLSELPPNLYYLNASSNEIRS------LC-DLPPSLEELNVSNNKLIE--LP-ALPPRLERLIASFNHLAE--VP-  353 (454)
T ss_dssp             SCCSEESCCCTTCCEEECCSSCCSE------EC-CCCTTCCEEECCSSCCSC--CC-CCCTTCCEEECCSSCCSC--CC-
T ss_pred             CccCcccCcCCcCCEEECcCCcCCc------cc-CCcCcCCEEECCCCcccc--cc-ccCCcCCEEECCCCcccc--cc-
Confidence            6442211223678888886554432      21 223588888887764332  22 235788888885443221  21 


Q ss_pred             HHHHHHhCCCccEEEEEEe
Q 014227          323 LSFVLKACPFLQKLVIKIW  341 (428)
Q Consensus       323 l~~lL~~~P~L~~L~i~~~  341 (428)
                        .   .+++|+.|++...
T Consensus       354 --~---~l~~L~~L~L~~N  367 (454)
T 1jl5_A          354 --E---LPQNLKQLHVEYN  367 (454)
T ss_dssp             --C---CCTTCCEEECCSS
T ss_pred             --c---hhhhccEEECCCC
Confidence              1   3688888888754

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.31  E-value=6.9e-05  Score=70.61  Aligned_cols=171  Identities=16%  Similarity=0.015  Sum_probs=78.4

Q ss_pred             CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEe--cCCCCcceEEeeecCCcceEE----EECCCcc
Q 014227          163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVV--GSSIPLKYLDIHYCYSMKEIE----ISASSLV  236 (428)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~--~~~~~L~~L~l~~c~~l~~i~----i~ap~L~  236 (428)
                      ++++++|+|.+..+..-. ...+.++++|+.|+|.++...+.+...  ..+++++.+.+..+..+..+.    -..++|+
T Consensus        29 ~~~l~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~  107 (350)
T 4ay9_X           29 PRNAIELRFVLTKLRVIQ-KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ  107 (350)
T ss_dssp             CTTCSEEEEESCCCSEEC-TTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred             CCCCCEEEccCCcCCCcC-HHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence            356777777776543100 012566777777777777644432211  134555655555555555542    1246777


Q ss_pred             eEEEcceeee----eecCCCCCeeEEEEeccCc-chhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEE
Q 014227          237 SFRYSGKDIK----LHVGNVPQLVDVVIHGAPL-FQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLT  311 (428)
Q Consensus       237 ~L~~~~~~~~----~~~~~~p~L~~l~l~~~~~-~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  311 (428)
                      .|.+.+....    .......++..+.+..... ..+..- .+. .....++.|.++...............+|++|.+.
T Consensus       108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~-~f~-~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~  185 (350)
T 4ay9_X          108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN-SFV-GLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLS  185 (350)
T ss_dssp             EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTT-SST-TSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECT
T ss_pred             cccccccccccCCchhhcccchhhhhhhcccccccccccc-chh-hcchhhhhhccccccccCCChhhccccchhHHhhc
Confidence            7777655331    1222344455555533211 110000 111 22245667777655433211112233445555542


Q ss_pred             eecCCCCchhHH-HHHHHhCCCccEEEEEE
Q 014227          312 ITEPNCESLLGL-SFVLKACPFLQKLVIKI  340 (428)
Q Consensus       312 ~~~~~~~~~~~l-~~lL~~~P~L~~L~i~~  340 (428)
                      .+  ..  ...+ ...+..+++|+.|+++.
T Consensus       186 ~~--n~--l~~i~~~~f~~l~~L~~LdLs~  211 (350)
T 4ay9_X          186 DN--NN--LEELPNDVFHGASGPVILDISR  211 (350)
T ss_dssp             TC--TT--CCCCCTTTTTTEECCSEEECTT
T ss_pred             cC--Cc--ccCCCHHHhccCcccchhhcCC
Confidence            11  11  1111 12345677777777754

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.30  E-value=0.00014  Score=70.58  Aligned_cols=37  Identities=19%  Similarity=0.436  Sum_probs=35.3

Q ss_pred             ccccCCCCcHHHHHHHHhcCChHHHHHHHHhhHHHhh
Q 014227           19 MEDWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKY   55 (428)
Q Consensus        19 ~~D~~s~LPd~iL~~Ils~L~~~d~~~~s~vskrWr~   55 (428)
                      ..|.++.||+|++.+||+||+.+|+++++.|||+|+.
T Consensus        15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~   51 (445)
T 2ovr_B           15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRI   51 (445)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHH
T ss_pred             cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHh
Confidence            4689999999999999999999999999999999986

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.30  E-value=6.9e-05  Score=72.57  Aligned_cols=37  Identities=24%  Similarity=0.459  Sum_probs=34.9

Q ss_pred             ccccCCCCcHH----HHHHHHhcCChHHHHHHHHhhHHHhh
Q 014227           19 MEDWFSKFPDD----ILVNIISRLTLKEAARTSVLSSRWKY   55 (428)
Q Consensus        19 ~~D~~s~LPd~----iL~~Ils~L~~~d~~~~s~vskrWr~   55 (428)
                      ..|.++.||+|    |+.+||+||+.+++++++.|||+|++
T Consensus         7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~   47 (435)
T 1p22_A            7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR   47 (435)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred             hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            36889999999    99999999999999999999999985

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.27  E-value=4.9e-05  Score=63.93  Aligned_cols=60  Identities=15%  Similarity=0.046  Sum_probs=35.7

Q ss_pred             CCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecC
Q 014227          161 SGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCY  223 (428)
Q Consensus       161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~  223 (428)
                      ..+++|+.|+|.++.+..  +..+...+|+|+.|.+.++.... +..-..+++|+.|+++++.
T Consensus        16 ~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~-~~~l~~l~~L~~L~Ls~N~   75 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRK-LDGFPLLRRLKTLLVNNNR   75 (176)
T ss_dssp             ECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCE-ECCCCCCSSCCEEECCSSC
T ss_pred             CCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCc-ccccccCCCCCEEECCCCc
Confidence            356788888888776653  22233445578888887775322 2222245667777776664

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.22  E-value=0.00016  Score=72.56  Aligned_cols=31  Identities=13%  Similarity=0.161  Sum_probs=13.5

Q ss_pred             CCcceEEeeecCCcceEEEECCCcceEEEcce
Q 014227          212 IPLKYLDIHYCYSMKEIEISASSLVSFRYSGK  243 (428)
Q Consensus       212 ~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~~  243 (428)
                      ++|+.|+++++. +..+.-..++|+.|.+.+.
T Consensus       140 ~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N  170 (571)
T 3cvr_A          140 ALLEYINADNNQ-LTMLPELPTSLEVLSVRNN  170 (571)
T ss_dssp             TTCCEEECCSSC-CSCCCCCCTTCCEEECCSS
T ss_pred             ccccEEeCCCCc-cCcCCCcCCCcCEEECCCC
Confidence            455555555443 2222212345555555444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.15  E-value=0.00046  Score=57.86  Aligned_cols=133  Identities=12%  Similarity=0.037  Sum_probs=75.8

Q ss_pred             hcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEEECCCcceEEEcceeeeeecCCCCCeeEEEEeccCc
Q 014227          186 HSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRYSGKDIKLHVGNVPQLVDVVIHGAPL  265 (428)
Q Consensus       186 ~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~~~~~~~~~~~p~L~~l~l~~~~~  265 (428)
                      ..|+.|+.|.+.++.....-.+....++|+.|+++++. +..+                  -.+..+++|+.+++..+..
T Consensus        16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~-l~~~------------------~~l~~l~~L~~L~Ls~N~l   76 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE-IRKL------------------DGFPLLRRLKTLLVNNNRI   76 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSC-CCEE------------------CCCCCCSSCCEEECCSSCC
T ss_pred             CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCC-CCcc------------------cccccCCCCCEEECCCCcc
Confidence            35778888888887532211111122367777776664 2222                  1234556666666655544


Q ss_pred             chhhHHHhhccccCCcceeEEeeeeeeeeccc--CCCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227          266 FQVRYFIGLVVCCFPQLKTLDLECCNEVFMEF--GHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIW  341 (428)
Q Consensus       266 ~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~  341 (428)
                      ..+..  .++ ..+++|+.|+++.+.......  ....+++|++|.+..+..... ...-..++..+|+|+.|++...
T Consensus        77 ~~~~~--~~~-~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           77 CRIGE--GLD-QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             CEECS--CHH-HHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEEC
T ss_pred             cccCc--chh-hcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcC
Confidence            32110  122 678888888888775533221  255678889888855432211 1112335789999999998765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.10  E-value=0.00013  Score=63.89  Aligned_cols=147  Identities=14%  Similarity=0.063  Sum_probs=74.4

Q ss_pred             CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeE-EecCCCCcceEEeeecCCcceEEEECCCcceEEEc
Q 014227          163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLK-VVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRYS  241 (428)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~-i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~  241 (428)
                      .+.++.|+|.+..+..-.-...+.++++|+.|.|.++....... .-..+++|+.|+++++. +..+.            
T Consensus        31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~------------   97 (220)
T 2v70_A           31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR-LENVQ------------   97 (220)
T ss_dssp             CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCCCC------------
T ss_pred             CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc-cCccC------------
Confidence            35677888887765432111235677888888887765221100 00123445555554443 11110            


Q ss_pred             ceeeeeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEEeecCCC-Cc
Q 014227          242 GKDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLTITEPNC-ES  319 (428)
Q Consensus       242 ~~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~-~~  319 (428)
                          +-.+.++++|+.+++..+....+..  ..+ ..+++|+.|+++.+......-. +..+++|++|+|..+...+ ..
T Consensus        98 ----~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A           98 ----HKMFKGLESLKTLMLRSNRITCVGN--DSF-IGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             ----GGGGTTCSSCCEEECTTSCCCCBCT--TSS-TTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             ----HhHhcCCcCCCEEECCCCcCCeECH--hHc-CCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence                1124456666666665544332100  112 6677888888876644332211 5567788888885543222 33


Q ss_pred             hhHHHHHHHh
Q 014227          320 LLGLSFVLKA  329 (428)
Q Consensus       320 ~~~l~~lL~~  329 (428)
                      ..++...++.
T Consensus       171 l~~l~~~~~~  180 (220)
T 2v70_A          171 LAWLGEWLRK  180 (220)
T ss_dssp             GHHHHHHHHH
T ss_pred             hHHHHHHHHh
Confidence            4455555553

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.09  E-value=0.00016  Score=64.57  Aligned_cols=86  Identities=19%  Similarity=0.154  Sum_probs=43.1

Q ss_pred             cCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEEeecCCCCchhHHHHHH
Q 014227          249 VGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLTITEPNCESLLGLSFVL  327 (428)
Q Consensus       249 ~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~lL  327 (428)
                      +..+++|+.+++..+....+..  ..+ ..+++|+.|.++.+........ ...+++|++|+|..+......    ...+
T Consensus        79 ~~~l~~L~~L~L~~n~l~~~~~--~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~  151 (251)
T 3m19_A           79 FDDLTELGTLGLANNQLASLPL--GVF-DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP----AGAF  151 (251)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCT--TTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC----TTTT
T ss_pred             hccCCcCCEEECCCCcccccCh--hHh-cccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC----HHHc
Confidence            3455666666665443332110  122 5667777777766643321111 345667777777443222111    1234


Q ss_pred             HhCCCccEEEEEEe
Q 014227          328 KACPFLQKLVIKIW  341 (428)
Q Consensus       328 ~~~P~L~~L~i~~~  341 (428)
                      ..+++|+.|++...
T Consensus       152 ~~l~~L~~L~L~~N  165 (251)
T 3m19_A          152 DKLTNLQTLSLSTN  165 (251)
T ss_dssp             TTCTTCCEEECCSS
T ss_pred             CcCcCCCEEECCCC
Confidence            56677777777543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.09  E-value=0.00027  Score=62.17  Aligned_cols=144  Identities=17%  Similarity=0.139  Sum_probs=81.7

Q ss_pred             CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEE--ecCCCCcceEEeeecCCcceEEEECCCcceEEE
Q 014227          163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKV--VGSSIPLKYLDIHYCYSMKEIEISASSLVSFRY  240 (428)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~  240 (428)
                      .++|+.|+|.+..+..-. ...+.++++|+.|.|.++.. ..+..  -..+++|+.|+++++. +..+.           
T Consensus        39 ~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~-----------  104 (229)
T 3e6j_A           39 PTNAQILYLHDNQITKLE-PGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQ-LTVLP-----------  104 (229)
T ss_dssp             CTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCC-----------
T ss_pred             CCCCCEEEcCCCccCccC-HHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCCc-CCccC-----------
Confidence            488999999988765421 12367788999999988763 22111  1234566666665553 21111           


Q ss_pred             cceeeeeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEEeecCCC--
Q 014227          241 SGKDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLTITEPNC--  317 (428)
Q Consensus       241 ~~~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~--  317 (428)
                           ...+..+++|+.+++..+....+.   .-+ ..+++|+.|+++.+........ +..+++|++|.|..+...+  
T Consensus       105 -----~~~~~~l~~L~~L~Ls~N~l~~lp---~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          105 -----SAVFDRLVHLKELFMCCNKLTELP---RGI-ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             -----TTTTTTCTTCCEEECCSSCCCSCC---TTG-GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             -----hhHhCcchhhCeEeccCCcccccC---ccc-ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence                 011345666666666555443221   112 6788889998887754422212 5667888888885543222  


Q ss_pred             CchhHHHHHHHh
Q 014227          318 ESLLGLSFVLKA  329 (428)
Q Consensus       318 ~~~~~l~~lL~~  329 (428)
                      .+...+..++..
T Consensus       176 ~~~~~l~~~~~~  187 (229)
T 3e6j_A          176 RDIMYLRNWVAD  187 (229)
T ss_dssp             GGGHHHHHHHHH
T ss_pred             chhHHHHHHHHh
Confidence            234455555553

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.08  E-value=0.00019  Score=72.95  Aligned_cols=140  Identities=16%  Similarity=0.142  Sum_probs=78.0

Q ss_pred             CCcceEEEcceeee----eecCCCCCeeEEEEeccCcchhhHHH-hhccccCCcceeEEeeeeeeeecccC-CCCCCCcc
Q 014227          233 SSLVSFRYSGKDIK----LHVGNVPQLVDVVIHGAPLFQVRYFI-GLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLL  306 (428)
Q Consensus       233 p~L~~L~~~~~~~~----~~~~~~p~L~~l~l~~~~~~~~~~~~-~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~  306 (428)
                      ++++.+.+.+....    ..+..+++++.+++..+....  .+. +.+ ..+++|+.|+++.+......-. +..+++|+
T Consensus       445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~--~~~~~~~-~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~  521 (635)
T 4g8a_A          445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE--NFLPDIF-TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ  521 (635)
T ss_dssp             TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG--GEECSCC-TTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             cccccccccccccccccccccccchhhhhhhhhhccccc--ccCchhh-hhccccCEEECCCCccCCcChHHHcCCCCCC
Confidence            45555555443221    124456777777775443221  000 223 6788888888887754332211 56778888


Q ss_pred             EEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCcC---ccCCccEEEEee--eeeCCchHHHHH
Q 014227          307 HLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVH---LHQHLKVVELHE--FRWLQIDPEIAF  381 (428)
Q Consensus       307 ~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~~---~~~~L~~v~i~~--f~g~~~e~~~~~  381 (428)
                      +|.|+.+.-....    ...+..+++|+.|+++...       .....|+.   +.++|+.+.+.+  |.+.-.-..|..
T Consensus       522 ~L~Ls~N~l~~l~----~~~~~~l~~L~~L~Ls~N~-------l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~  590 (635)
T 4g8a_A          522 VLNMSHNNFFSLD----TFPYKCLNSLQVLDYSLNH-------IMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQ  590 (635)
T ss_dssp             EEECTTSCCCBCC----CGGGTTCTTCCEEECTTSC-------CCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHH
T ss_pred             EEECCCCcCCCCC----hhHHhCCCCCCEEECCCCc-------CCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHH
Confidence            8888544322211    2235678899999886432       11112222   336899999986  666655556666


Q ss_pred             HHHhc
Q 014227          382 FIFRN  386 (428)
Q Consensus       382 ~ll~~  386 (428)
                      ++-++
T Consensus       591 wl~~~  595 (635)
T 4g8a_A          591 WIKDQ  595 (635)
T ss_dssp             HHHHT
T ss_pred             HHHhC
Confidence            65443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.02  E-value=2.6e-05  Score=74.17  Aligned_cols=137  Identities=11%  Similarity=0.041  Sum_probs=77.1

Q ss_pred             CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCcee--eEE----ecCCCCcceEEeeecCCcceEEEECCCcc
Q 014227          163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLS--LKV----VGSSIPLKYLDIHYCYSMKEIEISASSLV  236 (428)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~--l~i----~~~~~~L~~L~l~~c~~l~~i~i~ap~L~  236 (428)
                      .++|++|+|+++.+++..+..+...+++|+.|+|.+|.....  -.+    ....++|+.|++.+|. +......     
T Consensus       100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~-----  173 (372)
T 3un9_A          100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVA-----  173 (372)
T ss_dssp             SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHH-----
T ss_pred             CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHH-----
Confidence            468888888888887777777777777888888888753110  001    0123567777776664 1110000     


Q ss_pred             eEEEcceeeeeecCCCCCeeEEEEeccCcch--hhHHHhhccccCCcceeEEeeeeeeeeccc---C--CCCCCCccEEE
Q 014227          237 SFRYSGKDIKLHVGNVPQLVDVVIHGAPLFQ--VRYFIGLVVCCFPQLKTLDLECCNEVFMEF---G--HWELPKLLHLK  309 (428)
Q Consensus       237 ~L~~~~~~~~~~~~~~p~L~~l~l~~~~~~~--~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~---~--~~~~~~L~~L~  309 (428)
                             .+.-.+...++|+.+++..+...+  ...+...+ ...++|+.|+++.+.+.....   .  ....++|++|+
T Consensus       174 -------~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L-~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~  245 (372)
T 3un9_A          174 -------VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQL-DRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLH  245 (372)
T ss_dssp             -------HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHG-GGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEE
T ss_pred             -------HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHH-hcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEe
Confidence                   000011234556666665554443  11222344 667788888888775443221   1  34567899998


Q ss_pred             EEee
Q 014227          310 LTIT  313 (428)
Q Consensus       310 l~~~  313 (428)
                      |..+
T Consensus       246 Ls~N  249 (372)
T 3un9_A          246 LYFN  249 (372)
T ss_dssp             CTTS
T ss_pred             ccCC
Confidence            8544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=96.92  E-value=0.00022  Score=61.52  Aligned_cols=128  Identities=18%  Similarity=0.132  Sum_probs=68.7

Q ss_pred             CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEE--ecCCCCcceEEeeecCCcceEEEECCCcceEEE
Q 014227          163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKV--VGSSIPLKYLDIHYCYSMKEIEISASSLVSFRY  240 (428)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~  240 (428)
                      .++|+.|+|.+..+.+- ....+.++++|+.|.+.++... .+.-  -..+++|+.|++.++. +..+.           
T Consensus        27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~-l~~~~-----------   92 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQ-LQSLP-----------   92 (208)
T ss_dssp             CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-CCCCC-----------
T ss_pred             CCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCc-CCccC-----------
Confidence            56899999988876531 1223567888999988876432 1111  1133566666665553 11110           


Q ss_pred             cceeeeeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEEe
Q 014227          241 SGKDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLTI  312 (428)
Q Consensus       241 ~~~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~  312 (428)
                           ...+.++++|+.+++..+....+..  ..+ ..+++|+.|+++.+........ ...+++|++|++..
T Consensus        93 -----~~~~~~l~~L~~L~L~~N~l~~~~~--~~~-~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~  157 (208)
T 2o6s_A           93 -----NGVFDKLTQLKELALNTNQLQSLPD--GVF-DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD  157 (208)
T ss_dssp             -----TTTTTTCTTCCEEECCSSCCCCCCT--TTT-TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             -----HhHhcCccCCCEEEcCCCcCcccCH--hHh-ccCCcCCEEECCCCccceeCHHHhccCCCccEEEecC
Confidence                 0113445566666665443322110  122 5677788888776643321111 45567777777744

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=96.87  E-value=0.0012  Score=62.09  Aligned_cols=56  Identities=18%  Similarity=0.095  Sum_probs=32.6

Q ss_pred             ccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEE
Q 014227          277 CCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIK  339 (428)
Q Consensus       277 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~  339 (428)
                      ..+++|+.|+++.+...  .+|...|.+|++|.+...    .....+.. +..+++|+.+++.
T Consensus       199 ~~l~~L~~LdLs~N~l~--~lp~~~~~~L~~L~~l~~----~~l~~lP~-l~~l~~L~~l~l~  254 (350)
T 4ay9_X          199 HGASGPVILDISRTRIH--SLPSYGLENLKKLRARST----YNLKKLPT-LEKLVALMEASLT  254 (350)
T ss_dssp             TTEECCSEEECTTSCCC--CCCSSSCTTCCEEECTTC----TTCCCCCC-TTTCCSCCEEECS
T ss_pred             ccCcccchhhcCCCCcC--ccChhhhccchHhhhccC----CCcCcCCC-chhCcChhhCcCC
Confidence            66778888888766432  344555777877776221    11111111 4567778777774

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=96.86  E-value=0.00092  Score=67.81  Aligned_cols=36  Identities=31%  Similarity=0.174  Sum_probs=16.5

Q ss_pred             CCcccceEEeeeEEeehHHHHHHHhcCCcccceeeccc
Q 014227          162 GIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANS  199 (428)
Q Consensus       162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~  199 (428)
                      .+.+|+.|++.........  ..+..++.|+.+.+..+
T Consensus       395 ~~~~L~~L~~~~~~~~~~~--~~~~~l~~L~~l~l~~~  430 (635)
T 4g8a_A          395 GTISLKYLDLSFNGVITMS--SNFLGLEQLEHLDFQHS  430 (635)
T ss_dssp             SCSCCCEEECCSCSEEEEC--SCCTTCTTCCEEECTTS
T ss_pred             hhhhhhhhhcccccccccc--ccccccccccchhhhhc
Confidence            3455666665544322110  01344555665555544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=96.85  E-value=0.0014  Score=57.07  Aligned_cols=148  Identities=14%  Similarity=0.041  Sum_probs=79.4

Q ss_pred             CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceee-EEecCCCCcceEEeeecCCcceEEEECCCcceEEEc
Q 014227          163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSL-KVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRYS  241 (428)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~  241 (428)
                      .++|+.|+|.+..+..-. ...+.++++|+.|.|.++...... ..-..+++|+.|+++++. +..+.            
T Consensus        31 ~~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~------------   96 (220)
T 2v9t_B           31 PETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELP------------   96 (220)
T ss_dssp             CTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCC------------
T ss_pred             CcCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccC------------
Confidence            368899998887654311 112567788888888877532110 001123455555555443 11110            


Q ss_pred             ceeeeeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEEeecCCC-Cc
Q 014227          242 GKDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLTITEPNC-ES  319 (428)
Q Consensus       242 ~~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~-~~  319 (428)
                          .-.+.++++|+.+++..+....+..  ..+ ..+++|+.|+++.+........ ...+++|++|+|..+...+ ..
T Consensus        97 ----~~~f~~l~~L~~L~L~~N~l~~~~~--~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B           97 ----KSLFEGLFSLQLLLLNANKINCLRV--DAF-QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             ----TTTTTTCTTCCEEECCSSCCCCCCT--TTT-TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             ----HhHccCCCCCCEEECCCCCCCEeCH--HHc-CCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence                0113456667777766554432110  122 6778888888877754433222 5567788888885543222 34


Q ss_pred             hhHHHHHHHhCC
Q 014227          320 LLGLSFVLKACP  331 (428)
Q Consensus       320 ~~~l~~lL~~~P  331 (428)
                      ..++...++.-+
T Consensus       170 l~~l~~~l~~~~  181 (220)
T 2v9t_B          170 LKWLADYLHTNP  181 (220)
T ss_dssp             GHHHHHHHHHCC
T ss_pred             cHHHHHHHHhCC
Confidence            556666666543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=96.68  E-value=7.2e-05  Score=64.24  Aligned_cols=61  Identities=21%  Similarity=-0.011  Sum_probs=36.3

Q ss_pred             ccCCcceeEEeeeeeeeeccc-C-CCCCCCccEEEEEeecCCCC--c----hhHHHHHHHhCCCccEEE
Q 014227          277 CCFPQLKTLDLECCNEVFMEF-G-HWELPKLLHLKLTITEPNCE--S----LLGLSFVLKACPFLQKLV  337 (428)
Q Consensus       277 ~~~~~l~~L~l~~~~~~~~~~-~-~~~~~~L~~L~l~~~~~~~~--~----~~~l~~lL~~~P~L~~L~  337 (428)
                      ..+++|+.|.++.+....... . ...+++|++|.+..+.....  .    ......++..+|+|+.|+
T Consensus       112 ~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            566778888887765443221 2 55677888888844321110  0    112345578899999886

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=96.56  E-value=3.2e-05  Score=66.47  Aligned_cols=60  Identities=17%  Similarity=0.127  Sum_probs=33.4

Q ss_pred             CCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecC
Q 014227          161 SGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCY  223 (428)
Q Consensus       161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~  223 (428)
                      ..+++|++|+|.+..+.+  +. .+.++++|+.|.+.++...........+++|+.|+++++.
T Consensus        45 ~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~  104 (198)
T 1ds9_A           45 STLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ  104 (198)
T ss_dssp             HHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE
T ss_pred             hcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc
Confidence            346777777777777654  22 3566777777777766422110111122456666666553

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.46  E-value=0.0052  Score=56.98  Aligned_cols=79  Identities=14%  Similarity=0.041  Sum_probs=44.3

Q ss_pred             CCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeee-cccCCCCCCCcc-EEEEEeecCCCCchhHHHHHHHh
Q 014227          252 VPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVF-MEFGHWELPKLL-HLKLTITEPNCESLLGLSFVLKA  329 (428)
Q Consensus       252 ~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~lL~~  329 (428)
                      +++|+.+.+.......++.  ..+ .+|.+|+.|.+... ... ....+..+.+|+ .|.+..   .-....  ...+..
T Consensus       225 ~~~L~~l~L~~n~i~~I~~--~aF-~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~---~l~~I~--~~aF~~  295 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPD--FTF-AQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA---SVTAIE--FGAFMG  295 (329)
T ss_dssp             CTTCCEEECTTBCCCEECT--TTT-TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT---TCCEEC--TTTTTT
T ss_pred             cCCCeEEECCCCCcceecH--hhh-hCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc---cceEEc--hhhhhC
Confidence            6778888776543332110  122 78888888888654 211 111156667777 777722   111111  233578


Q ss_pred             CCCccEEEEE
Q 014227          330 CPFLQKLVIK  339 (428)
Q Consensus       330 ~P~L~~L~i~  339 (428)
                      |++|+.|.+.
T Consensus       296 c~~L~~l~l~  305 (329)
T 3sb4_A          296 CDNLRYVLAT  305 (329)
T ss_dssp             CTTEEEEEEC
T ss_pred             CccCCEEEeC
Confidence            8999998874

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=96.42  E-value=0.0021  Score=55.94  Aligned_cols=35  Identities=20%  Similarity=0.084  Sum_probs=15.2

Q ss_pred             ccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEE
Q 014227          277 CCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLT  311 (428)
Q Consensus       277 ~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~  311 (428)
                      ..+++|+.|.++.+........ +..+++|++|+|.
T Consensus       101 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  136 (220)
T 2v9t_B          101 EGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY  136 (220)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECC
Confidence            4455555555554432221111 3344455555553

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=96.30  E-value=0.00078  Score=58.04  Aligned_cols=63  Identities=17%  Similarity=0.105  Sum_probs=41.2

Q ss_pred             CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeE-EecCCCCcceEEeeecC
Q 014227          160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLK-VVGSSIPLKYLDIHYCY  223 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~-i~~~~~~L~~L~l~~c~  223 (428)
                      +..+++|++|+|.+..+.+- ....+.++++|+.|.|.++....... .-..+++|+.|++.++.
T Consensus        48 ~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  111 (208)
T 2o6s_A           48 FDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ  111 (208)
T ss_dssp             TTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             hcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCc
Confidence            45789999999998876531 12235788999999999875322110 01234677777777664

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=96.22  E-value=0.0015  Score=65.56  Aligned_cols=113  Identities=14%  Similarity=0.064  Sum_probs=61.6

Q ss_pred             CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEEECCCcceEEEcc
Q 014227          163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRYSG  242 (428)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~  242 (428)
                      +++|++|+|++..+..  +.   ..+++|+.|.|.++.... +.-  -..+|+.|+++++. +..+.-..++|+.|++.+
T Consensus        79 ~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~l~~-ip~--l~~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~  149 (571)
T 3cvr_A           79 PPQITVLEITQNALIS--LP---ELPASLEYLDACDNRLST-LPE--LPASLKHLDVDNNQ-LTMLPELPALLEYINADN  149 (571)
T ss_dssp             CTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCS
T ss_pred             cCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCCCCC-cch--hhcCCCEEECCCCc-CCCCCCcCccccEEeCCC
Confidence            4677777777776542  11   446777777777764322 111  11377777777665 222222456777777766


Q ss_pred             eeeeeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeee
Q 014227          243 KDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCN  291 (428)
Q Consensus       243 ~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~  291 (428)
                      ..+...-..+++|+.+++..+....+..    + .  ++|+.|+++.+.
T Consensus       150 N~l~~lp~~l~~L~~L~Ls~N~L~~lp~----l-~--~~L~~L~Ls~N~  191 (571)
T 3cvr_A          150 NQLTMLPELPTSLEVLSVRNNQLTFLPE----L-P--ESLEALDVSTNL  191 (571)
T ss_dssp             SCCSCCCCCCTTCCEEECCSSCCSCCCC----C-C--TTCCEEECCSSC
T ss_pred             CccCcCCCcCCCcCEEECCCCCCCCcch----h-h--CCCCEEECcCCC
Confidence            6442111145677777776554432111    1 2  566666666553

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=96.22  E-value=0.0016  Score=61.35  Aligned_cols=126  Identities=16%  Similarity=0.137  Sum_probs=66.2

Q ss_pred             CcccceEEeeeEEeehHHHHHHHh-cCCcccceeecccCCceeeEE--ecCCCCcceEEeeecCCcceEEE----ECCCc
Q 014227          163 IKSLRSLCLNALKVSGEVLEFFIH-SCPHLEHLYVANSSELLSLKV--VGSSIPLKYLDIHYCYSMKEIEI----SASSL  235 (428)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~-~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~i----~ap~L  235 (428)
                      .+.++.|+|++..+.+-.-. .+. ++++|+.|.|.++.... +.-  -..+++|+.|+++++. +..+.-    ..++|
T Consensus        38 ~~~l~~L~Ls~N~l~~l~~~-~~~~~l~~L~~L~L~~N~i~~-i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L  114 (361)
T 2xot_A           38 PSYTALLDLSHNNLSRLRAE-WTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQAL  114 (361)
T ss_dssp             CTTCSEEECCSSCCCEECTT-SSSSCCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTC
T ss_pred             CCCCCEEECCCCCCCccChh-hhhhcccccCEEECCCCcCCc-cChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCC
Confidence            35577777777665431111 133 67777777777664321 110  1234667777777664 333321    23666


Q ss_pred             ceEEEcceeee----eecCCCCCeeEEEEeccCcchhhH-HHhhccccCCcceeEEeeeeee
Q 014227          236 VSFRYSGKDIK----LHVGNVPQLVDVVIHGAPLFQVRY-FIGLVVCCFPQLKTLDLECCNE  292 (428)
Q Consensus       236 ~~L~~~~~~~~----~~~~~~p~L~~l~l~~~~~~~~~~-~~~l~~~~~~~l~~L~l~~~~~  292 (428)
                      +.|.+.+..+.    ..+.++++|+.+++..+....+.. .+.-. ..+++|+.|+++.+.+
T Consensus       115 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~-~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A          115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG-NKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC-----CTTCCEEECCSSCC
T ss_pred             CEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCc-ccCCcCCEEECCCCCC
Confidence            77776655432    135567777777776655443111 11001 3467777777776643

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=96.17  E-value=0.0034  Score=54.94  Aligned_cols=142  Identities=14%  Similarity=0.097  Sum_probs=75.9

Q ss_pred             CCcceEEEcceeee----eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccE
Q 014227          233 SSLVSFRYSGKDIK----LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLH  307 (428)
Q Consensus       233 p~L~~L~~~~~~~~----~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~  307 (428)
                      ++|+.|.+.+..+.    -.+.++++|+.+++..+....+..  ..+ ..+++|+.|+++.+.+....-. +..+++|++
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~--~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  116 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPV--GVF-DSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKE  116 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcCh--hhc-ccCCCcCEEECCCCcCCccChhHhCcchhhCe
Confidence            44555555444321    124566777777776554432110  222 6778888888877754322111 456788888


Q ss_pred             EEEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCcC---ccCCccEEEEee--eeeCCchHH-HHH
Q 014227          308 LKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVH---LHQHLKVVELHE--FRWLQIDPE-IAF  381 (428)
Q Consensus       308 L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~~---~~~~L~~v~i~~--f~g~~~e~~-~~~  381 (428)
                      |.|..+....     +..-+..+++|+.|++....       ... +|..   ...+|+.+.+.+  +.+...++. +..
T Consensus       117 L~Ls~N~l~~-----lp~~~~~l~~L~~L~L~~N~-------l~~-~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~  183 (229)
T 3e6j_A          117 LFMCCNKLTE-----LPRGIERLTHLTHLALDQNQ-------LKS-IPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRN  183 (229)
T ss_dssp             EECCSSCCCS-----CCTTGGGCTTCSEEECCSSC-------CCC-CCTTTTTTCTTCCEEECTTSCBCTTBGGGHHHHH
T ss_pred             EeccCCcccc-----cCcccccCCCCCEEECCCCc-------CCc-cCHHHHhCCCCCCEEEeeCCCccCCcchhHHHHH
Confidence            8885443221     22334778888888886532       111 2211   246777777765  333332333 344


Q ss_pred             HHHhccccc
Q 014227          382 FIFRNAKVL  390 (428)
Q Consensus       382 ~ll~~a~~L  390 (428)
                      ++..+...+
T Consensus       184 ~~~~~~~~~  192 (229)
T 3e6j_A          184 WVADHTSIA  192 (229)
T ss_dssp             HHHHCGGGE
T ss_pred             HHHhCcccc
Confidence            554555544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.06  E-value=0.011  Score=54.88  Aligned_cols=58  Identities=22%  Similarity=0.250  Sum_probs=37.5

Q ss_pred             ccCCcceeEEeeeeeeeeccc-CCCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCcc-EEEEE
Q 014227          277 CCFPQLKTLDLECCNEVFMEF-GHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQ-KLVIK  339 (428)
Q Consensus       277 ~~~~~l~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~-~L~i~  339 (428)
                      ..+++|+.|++..+......- .+..+.+|++|.|..+   -....  ...+..|++|+ .+.+.
T Consensus       223 ~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n---i~~I~--~~aF~~~~~L~~~l~l~  282 (329)
T 3sb4_A          223 DYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN---LKTIG--QRVFSNCGRLAGTLELP  282 (329)
T ss_dssp             HHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT---CCEEC--TTTTTTCTTCCEEEEEC
T ss_pred             HhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc---cceeh--HHHhhCChhccEEEEEc
Confidence            458999999997653322211 2677889999988332   11111  23357999999 99985

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=95.92  E-value=0.0069  Score=57.00  Aligned_cols=145  Identities=16%  Similarity=0.084  Sum_probs=82.6

Q ss_pred             CcccceeecccCCceeeE---EecCCCCcceEEeeecCCcceEEE----ECCCcceEEEcceeee-e---ecCCCCCeeE
Q 014227          189 PHLEHLYVANSSELLSLK---VVGSSIPLKYLDIHYCYSMKEIEI----SASSLVSFRYSGKDIK-L---HVGNVPQLVD  257 (428)
Q Consensus       189 p~Le~L~L~~~~~~~~l~---i~~~~~~L~~L~l~~c~~l~~i~i----~ap~L~~L~~~~~~~~-~---~~~~~p~L~~  257 (428)
                      +.++.|.|.++.. ..+.   +...+++|+.|.+.++. +..+..    ..++|+.|++.+..+. +   .+.++++|+.
T Consensus        39 ~~l~~L~Ls~N~l-~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  116 (361)
T 2xot_A           39 SYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV  116 (361)
T ss_dssp             TTCSEEECCSSCC-CEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCEEECCCCCC-CccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCE
Confidence            4588888888753 2221   11145788888888775 444431    2377888888776442 1   3556788888


Q ss_pred             EEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-C---CCCCCccEEEEEeecCCCCchhHHHHHHHhCCC-
Q 014227          258 VVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-H---WELPKLLHLKLTITEPNCESLLGLSFVLKACPF-  332 (428)
Q Consensus       258 l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~---~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~-  332 (428)
                      +++..+....+..  ..+ ..+++|+.|.++.+.+...... .   ..+++|++|+|..+......    ...+..+|+ 
T Consensus       117 L~L~~N~i~~~~~--~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~----~~~~~~l~~~  189 (361)
T 2xot_A          117 LLLYNNHIVVVDR--NAF-EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP----LTDLQKLPAW  189 (361)
T ss_dssp             EECCSSCCCEECT--TTT-TTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC----HHHHHHSCHH
T ss_pred             EECCCCcccEECH--HHh-CCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC----HHHhhhccHh
Confidence            8887665443110  122 6778888888877644321111 1   45678888887554332222    234455665 


Q ss_pred             -ccEEEEEEec
Q 014227          333 -LQKLVIKIWN  342 (428)
Q Consensus       333 -L~~L~i~~~~  342 (428)
                       ++.|.+...+
T Consensus       190 ~l~~l~l~~N~  200 (361)
T 2xot_A          190 VKNGLYLHNNP  200 (361)
T ss_dssp             HHTTEECCSSC
T ss_pred             hcceEEecCCC
Confidence             3667776543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=95.90  E-value=0.0034  Score=52.99  Aligned_cols=63  Identities=14%  Similarity=0.031  Sum_probs=29.0

Q ss_pred             ccCCcceeEEeeeeeeeeccc---C--CCCCCCccEEEE--EeecCCCCchhHHHHHHHhCCCccEEEEE
Q 014227          277 CCFPQLKTLDLECCNEVFMEF---G--HWELPKLLHLKL--TITEPNCESLLGLSFVLKACPFLQKLVIK  339 (428)
Q Consensus       277 ~~~~~l~~L~l~~~~~~~~~~---~--~~~~~~L~~L~l--~~~~~~~~~~~~l~~lL~~~P~L~~L~i~  339 (428)
                      ...++|++|+++.+.+.....   .  ....++|++|+|  ..+..+......+...++.+++|+.|++.
T Consensus        90 ~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~  159 (185)
T 1io0_A           90 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYH  159 (185)
T ss_dssp             HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred             HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEecc
Confidence            444556666665543322111   1  334445566555  32322222233345555555666666554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=95.87  E-value=0.0072  Score=56.91  Aligned_cols=76  Identities=17%  Similarity=-0.019  Sum_probs=40.0

Q ss_pred             CCCCeeEEEEeccCcchhh-HHHhhccccCCcceeEEeeeeeeeecc---cC--CCCCCCccEEEEEeecCCCCchhHHH
Q 014227          251 NVPQLVDVVIHGAPLFQVR-YFIGLVVCCFPQLKTLDLECCNEVFME---FG--HWELPKLLHLKLTITEPNCESLLGLS  324 (428)
Q Consensus       251 ~~p~L~~l~l~~~~~~~~~-~~~~l~~~~~~~l~~L~l~~~~~~~~~---~~--~~~~~~L~~L~l~~~~~~~~~~~~l~  324 (428)
                      .+|+|+.+.+..+...+.. ..+.-. ..+++|++|+++.+......   +.  .+.+++|++|+|..+.   .+..++.
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a-~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~---i~d~~~~  325 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY---LSDEMKK  325 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHC-SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB---CCHHHHH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhC-ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc---CCHHHHH
Confidence            3566666666544433211 111001 24678888888776544321   11  3567899999985443   3344444


Q ss_pred             HHHHhC
Q 014227          325 FVLKAC  330 (428)
Q Consensus       325 ~lL~~~  330 (428)
                      .+-+.+
T Consensus       326 ~l~~al  331 (362)
T 2ra8_A          326 ELQKSL  331 (362)
T ss_dssp             HHHHHC
T ss_pred             HHHHHc
Confidence            444444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=95.83  E-value=0.0071  Score=52.56  Aligned_cols=86  Identities=14%  Similarity=0.058  Sum_probs=47.3

Q ss_pred             cCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEEeecCCCCchhHHHHHH
Q 014227          249 VGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLTITEPNCESLLGLSFVL  327 (428)
Q Consensus       249 ~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~lL  327 (428)
                      +.++++|+.+++..+....+..  ..+ ..+++|+.|.++.+.+....-. +..+++|++|+|..+......    ...+
T Consensus        77 ~~~l~~L~~L~Ls~N~l~~~~~--~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~  149 (220)
T 2v70_A           77 FEGASGVNEILLTSNRLENVQH--KMF-KGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA----PGAF  149 (220)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCG--GGG-TTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC----TTTT
T ss_pred             hCCCCCCCEEECCCCccCccCH--hHh-cCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC----HHHh
Confidence            4566677777776554433111  122 6777888888876644332111 556677777777443222111    2234


Q ss_pred             HhCCCccEEEEEEe
Q 014227          328 KACPFLQKLVIKIW  341 (428)
Q Consensus       328 ~~~P~L~~L~i~~~  341 (428)
                      ..+++|+.|++...
T Consensus       150 ~~l~~L~~L~L~~N  163 (220)
T 2v70_A          150 DTLHSLSTLNLLAN  163 (220)
T ss_dssp             TTCTTCCEEECCSC
T ss_pred             cCCCCCCEEEecCc
Confidence            56777777777654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=95.66  E-value=0.0052  Score=61.66  Aligned_cols=147  Identities=14%  Similarity=0.007  Sum_probs=75.8

Q ss_pred             HHHHhcCCcccceeecccCCceee-----------EEecCCCCcceEEeeecCCcceEE--EECCCcceEEEcceee---
Q 014227          182 EFFIHSCPHLEHLYVANSSELLSL-----------KVVGSSIPLKYLDIHYCYSMKEIE--ISASSLVSFRYSGKDI---  245 (428)
Q Consensus       182 ~~ll~~cp~Le~L~L~~~~~~~~l-----------~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~L~~~~~~~---  245 (428)
                      ...+.++++|+.|....+.....+           .+..  ..|+.|+++++. +..+.  -..++|+.|++++..+   
T Consensus       402 ~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~--~~L~~L~Ls~n~-l~~lp~~~~l~~L~~L~Ls~N~l~~l  478 (567)
T 1dce_A          402 KETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEY--ADVRVLHLAHKD-LTVLCHLEQLLLVTHLDLSHNRLRAL  478 (567)
T ss_dssp             HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHH--TTCSEEECTTSC-CSSCCCGGGGTTCCEEECCSSCCCCC
T ss_pred             HHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCc--cCceEEEecCCC-CCCCcCccccccCcEeecCccccccc
Confidence            345667888888883222111100           1111  457788887775 33221  1235677777766533   


Q ss_pred             eeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC--CCCCCCccEEEEEeecCCCCchhHH
Q 014227          246 KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG--HWELPKLLHLKLTITEPNCESLLGL  323 (428)
Q Consensus       246 ~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l  323 (428)
                      +-.+.++++|+.+++..+....+. .   + ..+++|+.|+++.+.......|  ...+++|+.|+|..+..... ...+
T Consensus       479 p~~~~~l~~L~~L~Ls~N~l~~lp-~---l-~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~-~~~~  552 (567)
T 1dce_A          479 PPALAALRCLEVLQASDNALENVD-G---V-ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE-EGIQ  552 (567)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCCCG-G---G-TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS-SSCT
T ss_pred             chhhhcCCCCCEEECCCCCCCCCc-c---c-CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC-ccHH
Confidence            224556667777777655444332 1   1 5666777777766644333212  55566677776643321110 1122


Q ss_pred             HHHHHhCCCccEEE
Q 014227          324 SFVLKACPFLQKLV  337 (428)
Q Consensus       324 ~~lL~~~P~L~~L~  337 (428)
                      ..++..+|+|+.|.
T Consensus       553 ~~l~~~lp~L~~L~  566 (567)
T 1dce_A          553 ERLAEMLPSVSSIL  566 (567)
T ss_dssp             THHHHHCTTCSEEE
T ss_pred             HHHHHHCcccCccC
Confidence            34455667776664

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=95.24  E-value=0.0037  Score=62.76  Aligned_cols=101  Identities=18%  Similarity=0.203  Sum_probs=53.5

Q ss_pred             ccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEEECCCcceEEEccee
Q 014227          165 SLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRYSGKD  244 (428)
Q Consensus       165 ~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~~~  244 (428)
                      .|+.|+|++..+.+  +.. +.++++|+.|.|.++........-..+++|+.|+++++. +..+                
T Consensus       442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~l----------------  501 (567)
T 1dce_A          442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENV----------------  501 (567)
T ss_dssp             TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCC----------------
T ss_pred             CceEEEecCCCCCC--CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCC----------------
Confidence            57778877776543  223 667778888888776532110111134566666665553 1111                


Q ss_pred             eeeecCCCCCeeEEEEeccCcchh--hHHHhhccccCCcceeEEeeeee
Q 014227          245 IKLHVGNVPQLVDVVIHGAPLFQV--RYFIGLVVCCFPQLKTLDLECCN  291 (428)
Q Consensus       245 ~~~~~~~~p~L~~l~l~~~~~~~~--~~~~~l~~~~~~~l~~L~l~~~~  291 (428)
                       + .+.++++|+.+++..+...++  .   ..+ ..+++|+.|+++++.
T Consensus       502 -p-~l~~l~~L~~L~Ls~N~l~~~~~p---~~l-~~l~~L~~L~L~~N~  544 (567)
T 1dce_A          502 -D-GVANLPRLQELLLCNNRLQQSAAI---QPL-VSCPRLVLLNLQGNS  544 (567)
T ss_dssp             -G-GGTTCSSCCEEECCSSCCCSSSTT---GGG-GGCTTCCEEECTTSG
T ss_pred             -c-ccCCCCCCcEEECCCCCCCCCCCc---HHH-hcCCCCCEEEecCCc
Confidence             1 244555566666554443321  1   112 566777777776653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=95.02  E-value=0.0094  Score=50.49  Aligned_cols=61  Identities=13%  Similarity=0.015  Sum_probs=34.3

Q ss_pred             CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceee-EEecCCCCcceEEeeecC
Q 014227          163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSL-KVVGSSIPLKYLDIHYCY  223 (428)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~  223 (428)
                      +++|+.|+|.+..+..-.-..++.++++|+.|.|.++...+.. ..-..+++|+.|+++++.
T Consensus        28 ~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence            3478888888776543211123567788888888776532210 011134566666666654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=94.51  E-value=0.025  Score=47.89  Aligned_cols=53  Identities=21%  Similarity=0.116  Sum_probs=30.1

Q ss_pred             ccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEEeecCC-CCchhHHHHHHHh
Q 014227          277 CCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLTITEPN-CESLLGLSFVLKA  329 (428)
Q Consensus       277 ~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~-~~~~~~l~~lL~~  329 (428)
                      ..+++|+.|.++...+...... +..+++|++|+|..+... +....++...++.
T Consensus        99 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~  153 (193)
T 2wfh_A           99 DGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKS  153 (193)
T ss_dssp             TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred             CCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHh
Confidence            5677777777776644322211 455678888888554322 1344555555554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=94.51  E-value=0.038  Score=52.76  Aligned_cols=157  Identities=11%  Similarity=0.131  Sum_probs=73.4

Q ss_pred             ccceEEeeeE--EeehHHHHHHHhcCCcccceeecccCCceeeEEec-CCCCcceEEeeecCCcceEEE----ECCCcce
Q 014227          165 SLRSLCLNAL--KVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVG-SSIPLKYLDIHYCYSMKEIEI----SASSLVS  237 (428)
Q Consensus       165 ~L~~L~L~~~--~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~-~~~~L~~L~l~~c~~l~~i~i----~ap~L~~  237 (428)
                      +|+.+.|..-  .+++.    .+.+|++|+.+.+..... ..+.-.+ .+.+|+.+.+..  .+..+.-    .+++|+.
T Consensus       158 ~L~~i~lp~~l~~I~~~----aF~~c~~L~~l~l~~n~l-~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~  230 (401)
T 4fdw_A          158 TVQEIVFPSTLEQLKED----IFYYCYNLKKADLSKTKI-TKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKT  230 (401)
T ss_dssp             CCCEEECCTTCCEECSS----TTTTCTTCCEEECTTSCC-SEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCC
T ss_pred             CceEEEeCCCccEehHH----HhhCcccCCeeecCCCcc-eEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCE
Confidence            5777766541  13332    256788888887764321 1110000 124555555531  1222221    2355665


Q ss_pred             EEEcceeeee---ecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeee------ecccCCCCCCCccEE
Q 014227          238 FRYSGKDIKL---HVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEV------FMEFGHWELPKLLHL  308 (428)
Q Consensus       238 L~~~~~~~~~---~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~------~~~~~~~~~~~L~~L  308 (428)
                      +.+.+....+   .+.+ .+|+.+.+... ...++.  ..+ ..|++|+.+.+......      .....+..+++|+.+
T Consensus       231 l~l~~~l~~I~~~aF~~-~~L~~i~lp~~-i~~I~~--~aF-~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l  305 (401)
T 4fdw_A          231 IEIPENVSTIGQEAFRE-SGITTVKLPNG-VTNIAS--RAF-YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARF  305 (401)
T ss_dssp             EECCTTCCEECTTTTTT-CCCSEEEEETT-CCEECT--TTT-TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEE
T ss_pred             EecCCCccCcccccccc-CCccEEEeCCC-ccEECh--hHh-hCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeE
Confidence            5554321111   1223 46777766321 111110  122 77888888888654322      111115666777877


Q ss_pred             EEEeecCCCCchhHHHHHHHhCCCccEEEE
Q 014227          309 KLTITEPNCESLLGLSFVLKACPFLQKLVI  338 (428)
Q Consensus       309 ~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i  338 (428)
                      .|...   -....  ...+..|++|+.+.|
T Consensus       306 ~l~~~---i~~I~--~~aF~~c~~L~~l~l  330 (401)
T 4fdw_A          306 EIPES---IRILG--QGLLGGNRKVTQLTI  330 (401)
T ss_dssp             CCCTT---CCEEC--TTTTTTCCSCCEEEE
T ss_pred             EeCCc---eEEEh--hhhhcCCCCccEEEE
Confidence            76211   10110  123467888888887

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=94.28  E-value=0.025  Score=46.96  Aligned_cols=10  Identities=10%  Similarity=0.125  Sum_probs=4.4

Q ss_pred             CcceEEeeec
Q 014227          213 PLKYLDIHYC  222 (428)
Q Consensus       213 ~L~~L~l~~c  222 (428)
                      +|+.|++.++
T Consensus        29 ~l~~L~l~~n   38 (177)
T 2o6r_A           29 SATRLELESN   38 (177)
T ss_dssp             TCSEEECCSS
T ss_pred             CCcEEEeCCC
Confidence            4444444443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=94.26  E-value=0.02  Score=48.55  Aligned_cols=84  Identities=17%  Similarity=0.041  Sum_probs=36.6

Q ss_pred             CCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEEeecCCCCchhHHHHHHH
Q 014227          250 GNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLTITEPNCESLLGLSFVLK  328 (428)
Q Consensus       250 ~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~  328 (428)
                      .++++|+.+++..+....+..  ..+ ..+++|+.|.++.......... +..+++|++|+|..+......    ...+.
T Consensus        51 ~~l~~L~~L~Ls~N~i~~i~~--~~f-~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~----~~~~~  123 (193)
T 2wfh_A           51 SNYKHLTLIDLSNNRISTLSN--QSF-SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP----EGAFN  123 (193)
T ss_dssp             GGCTTCCEEECCSSCCCCCCT--TTT-TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCC----TTTTT
T ss_pred             hcccCCCEEECCCCcCCEeCH--hHc-cCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeC----hhhhh
Confidence            344555555554443332110  112 5556666666655533222111 444556666666433221111    11234


Q ss_pred             hCCCccEEEEEE
Q 014227          329 ACPFLQKLVIKI  340 (428)
Q Consensus       329 ~~P~L~~L~i~~  340 (428)
                      .+++|+.|++..
T Consensus       124 ~l~~L~~L~L~~  135 (193)
T 2wfh_A          124 DLSALSHLAIGA  135 (193)
T ss_dssp             TCTTCCEEECCS
T ss_pred             cCccccEEEeCC
Confidence            455666665543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=94.11  E-value=0.0062  Score=63.06  Aligned_cols=105  Identities=20%  Similarity=0.216  Sum_probs=66.0

Q ss_pred             CCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeE-EecCCCCcceEEeeecCCcceEE---EECCC
Q 014227          159 GLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLK-VVGSSIPLKYLDIHYCYSMKEIE---ISASS  234 (428)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~-i~~~~~~L~~L~l~~c~~l~~i~---i~ap~  234 (428)
                      .+..+++|+.|+|.+..+..  +..-+.++++|+.|.|.++... .+. --..+++|+.|+++++. +..+.   -..++
T Consensus       219 ~~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~  294 (727)
T 4b8c_D          219 SKYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQ  294 (727)
T ss_dssp             ---CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTT
T ss_pred             hhccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCC
Confidence            35568889999988887542  1112447888999999887543 111 01245788888888776 33331   12467


Q ss_pred             cceEEEcceee---eeecCCCCCeeEEEEeccCcch
Q 014227          235 LVSFRYSGKDI---KLHVGNVPQLVDVVIHGAPLFQ  267 (428)
Q Consensus       235 L~~L~~~~~~~---~~~~~~~p~L~~l~l~~~~~~~  267 (428)
                      |+.|.+.+..+   +..+.++++|+.+++..+....
T Consensus       295 L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          295 LKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             CSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             CCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence            88888776633   3346778888888887766553

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=93.97  E-value=0.011  Score=61.14  Aligned_cols=60  Identities=13%  Similarity=-0.106  Sum_probs=31.0

Q ss_pred             HHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEE---EECCCcceEEEcce
Q 014227          183 FFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIE---ISASSLVSFRYSGK  243 (428)
Q Consensus       183 ~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~---i~ap~L~~L~~~~~  243 (428)
                      ..+..++.|+.|.|.++.....-.-...+++|+.|+++++. +..+.   -..++|+.|++++.
T Consensus       218 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N  280 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHN  280 (727)
T ss_dssp             ----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTS
T ss_pred             hhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCC
Confidence            44677888999999887643110001134677777777765 22221   12355555555544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=93.97  E-value=0.049  Score=45.96  Aligned_cols=62  Identities=18%  Similarity=0.167  Sum_probs=34.5

Q ss_pred             cCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEEee
Q 014227          249 VGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLTIT  313 (428)
Q Consensus       249 ~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~  313 (428)
                      +.++++|+.+++.......+..  ..+ ..+++|+.|+++........-. ...+++|++|+|..+
T Consensus        74 ~~~l~~L~~L~Ls~N~l~~~~~--~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A           74 FEGASHIQELQLGENKIKEISN--KMF-LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             TTTCTTCCEEECCSCCCCEECS--SSS-TTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             cCCcccCCEEECCCCcCCccCH--HHh-cCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence            4456666666665544332110  112 5677788888776644332211 556677888877554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=93.77  E-value=0.018  Score=48.52  Aligned_cols=124  Identities=12%  Similarity=-0.020  Sum_probs=65.8

Q ss_pred             hhccccCCcceeEEeeee-eeeecccC-----CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCC
Q 014227          273 GLVVCCFPQLKTLDLECC-NEVFMEFG-----HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRT  346 (428)
Q Consensus       273 ~l~~~~~~~l~~L~l~~~-~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~  346 (428)
                      .++ ...++|++|+++.+ ........     ....++|++|+|..+..++.....+...++..++|+.|++....-. .
T Consensus        30 ~~l-~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~-~  107 (185)
T 1io0_A           30 RIQ-NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS-G  107 (185)
T ss_dssp             HHH-TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC-H
T ss_pred             HHH-hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC-H
Confidence            344 66777777777665 44332111     4455677777775443333344456666777788888887643210 0


Q ss_pred             cccccccCCcC--ccCCccEEEE--eeeeeCCchHHHHHHHHhcccccccEEEecCch
Q 014227          347 IGEKRHQIPVH--LHQHLKVVEL--HEFRWLQIDPEIAFFIFRNAKVLEKMIIKPSSS  400 (428)
Q Consensus       347 ~~~~~~~~p~~--~~~~L~~v~i--~~f~g~~~e~~~~~~ll~~a~~L~~l~i~~~~~  400 (428)
                      .+- .. +.+.  ...+|+.+.+  .+-.-.......+.-.+++.+.|+++.+....-
T Consensus       108 ~g~-~~-l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          108 SGI-LA-LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHH-HH-HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHH-HH-HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            000 00 0111  1356788877  432222222233334556678899998876543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=93.68  E-value=0.058  Score=44.65  Aligned_cols=60  Identities=22%  Similarity=0.117  Sum_probs=25.5

Q ss_pred             ccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEE
Q 014227          277 CCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKI  340 (428)
Q Consensus       277 ~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~  340 (428)
                      ..+++|+.|+++.+........ ...+++|++|++..+......    ...+..+++|+.|++..
T Consensus        49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~----~~~~~~l~~L~~L~l~~  109 (177)
T 2o6r_A           49 DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP----NGVFDKLTQLKELALDT  109 (177)
T ss_dssp             TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCS
T ss_pred             cCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccC----HHHhhCCcccCEEECcC
Confidence            4455555555554432211111 344555555555333211110    11234556666666543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=93.58  E-value=0.087  Score=43.42  Aligned_cols=98  Identities=20%  Similarity=0.168  Sum_probs=54.8

Q ss_pred             CCcceEEEcceeee----eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccE
Q 014227          233 SSLVSFRYSGKDIK----LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLH  307 (428)
Q Consensus       233 p~L~~L~~~~~~~~----~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~  307 (428)
                      ++|+.|.+.+..+.    -.+.++++|+.+++..+....+..  ..+ ..+++|+.|.++...+...... +..+++|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~--~~f-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  106 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA--GVF-DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTH  106 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT--TTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccCh--hhc-cCCCCCCEEECCCCccCEeCHHHhcCCCCCCE
Confidence            45555555544331    124567777777776554433111  222 6778888888877754432222 556778888


Q ss_pred             EEEEeecCCC--CchhHHHHHHHhCCCc
Q 014227          308 LKLTITEPNC--ESLLGLSFVLKACPFL  333 (428)
Q Consensus       308 L~l~~~~~~~--~~~~~l~~lL~~~P~L  333 (428)
                      |.|..+....  .+...+...++..+.+
T Consensus       107 L~L~~N~~~c~c~~l~~l~~~l~~~~~~  134 (170)
T 3g39_A          107 IWLLNNPWDCACSDILYLSRWISQHPGL  134 (170)
T ss_dssp             EECCSSCBCTTBGGGHHHHHHHHHCGGG
T ss_pred             EEeCCCCCCCCchhHHHHHHHHHhCcce
Confidence            8886553322  2355566666665544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=91.38  E-value=0.27  Score=40.56  Aligned_cols=96  Identities=17%  Similarity=0.160  Sum_probs=52.1

Q ss_pred             CCcceEEEcceeee----eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccE
Q 014227          233 SSLVSFRYSGKDIK----LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLH  307 (428)
Q Consensus       233 p~L~~L~~~~~~~~----~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~  307 (428)
                      ++|+.|.+.+..+.    -.+.++++|+.+++..+....+..  ..+ ..+++|+.|+++...+...... +..+++|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~--~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~  109 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT--GVF-DKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTH  109 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccCh--hHh-CCcchhhEEECCCCccceeCHHHhccccCCCE
Confidence            45666665554331    124566777777776554443110  122 6678888888877644422211 556778888


Q ss_pred             EEEEeecCCC--CchhHHHHHHHhCC
Q 014227          308 LKLTITEPNC--ESLLGLSFVLKACP  331 (428)
Q Consensus       308 L~l~~~~~~~--~~~~~l~~lL~~~P  331 (428)
                      |.|..+....  .+...+...++.-+
T Consensus       110 L~L~~N~~~c~~~~~~~l~~~~~~~~  135 (174)
T 2r9u_A          110 IYLYNNPWDCECRDIMYLRNWVADHT  135 (174)
T ss_dssp             EECCSSCBCTTBGGGHHHHHHHHHCG
T ss_pred             EEeCCCCcccccccHHHHHHHHHhcc
Confidence            8875553322  23445555555433

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=91.38  E-value=0.16  Score=48.06  Aligned_cols=97  Identities=18%  Similarity=0.123  Sum_probs=48.0

Q ss_pred             ccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCC-
Q 014227          277 CCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIP-  355 (428)
Q Consensus       277 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p-  355 (428)
                      ..+.+|+.+.+...-..........+.+|+++.|..  .. ....  ..-+..|.+|+++.|...        ... +. 
T Consensus       294 ~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~--~v-~~I~--~~aF~~c~~L~~i~lp~~--------l~~-I~~  359 (394)
T 4fs7_A          294 YGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPY--LV-EEIG--KRSFRGCTSLSNINFPLS--------LRK-IGA  359 (394)
T ss_dssp             TTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCT--TC-CEEC--TTTTTTCTTCCEECCCTT--------CCE-ECT
T ss_pred             cccccccccccccccceechhhhcCCCCCCEEEeCC--cc-cEEh--HHhccCCCCCCEEEECcc--------ccE-ehH
Confidence            677888888874331111111255667788777621  10 0110  122467888888876311        111 11 


Q ss_pred             cC--ccCCccEEEEeeeeeCCchHHHHHHHHhcccccccE
Q 014227          356 VH--LHQHLKVVELHEFRWLQIDPEIAFFIFRNAKVLEKM  393 (428)
Q Consensus       356 ~~--~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l  393 (428)
                      .+  -+.+|+.|.+..   .   +...++-..+++.|+.+
T Consensus       360 ~aF~~C~~L~~i~lp~---~---~~~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          360 NAFQGCINLKKVELPK---R---LEQYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TTBTTCTTCCEEEEEG---G---GGGGGGGBCTTCEEEEE
T ss_pred             HHhhCCCCCCEEEECC---C---CEEhhheecCCCCCcEE
Confidence            11  136788887742   1   12223335667777654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=90.30  E-value=0.15  Score=41.94  Aligned_cols=84  Identities=14%  Similarity=0.089  Sum_probs=47.3

Q ss_pred             CCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEEeecCCCCchhHHHHHHHhC
Q 014227          252 VPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLTITEPNCESLLGLSFVLKAC  330 (428)
Q Consensus       252 ~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~  330 (428)
                      .++|+.+++.......+..  ..+ ..+++|+.|+++...+....-. +..+++|++|+|..+......    ...+..+
T Consensus        29 ~~~l~~L~L~~N~i~~~~~--~~~-~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~----~~~~~~l  101 (170)
T 3g39_A           29 PTTTQVLYLYDNQITKLEP--GVF-DRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP----RGAFDNL  101 (170)
T ss_dssp             CTTCSEEECCSSCCCCCCT--TTT-TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTC
T ss_pred             CCCCcEEEcCCCcCCccCh--hhh-cCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeC----HHHhcCC
Confidence            3567777776655443210  122 6778888888877654322111 456677888877544322211    1234667


Q ss_pred             CCccEEEEEEec
Q 014227          331 PFLQKLVIKIWN  342 (428)
Q Consensus       331 P~L~~L~i~~~~  342 (428)
                      ++|+.|++...+
T Consensus       102 ~~L~~L~L~~N~  113 (170)
T 3g39_A          102 KSLTHIWLLNNP  113 (170)
T ss_dssp             TTCCEEECCSSC
T ss_pred             CCCCEEEeCCCC
Confidence            777777776543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=90.26  E-value=0.13  Score=46.01  Aligned_cols=86  Identities=23%  Similarity=0.193  Sum_probs=48.9

Q ss_pred             CCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeec-ccC-CCCCCCccEEEEEeecCCC--C-chhHHHH
Q 014227          251 NVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFM-EFG-HWELPKLLHLKLTITEPNC--E-SLLGLSF  325 (428)
Q Consensus       251 ~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~-~~~-~~~~~~L~~L~l~~~~~~~--~-~~~~l~~  325 (428)
                      ++|+|+.+++..+...++..+-.++ ..+++|+.|+|+...+... .+. ...+ +|++|.|..+....  . .......
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~-~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIV-QKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHH-HHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHH-hhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence            3455555555444433322111233 6889999999987755433 222 3333 89999885442111  0 1123456


Q ss_pred             HHHhCCCccEEEE
Q 014227          326 VLKACPFLQKLVI  338 (428)
Q Consensus       326 lL~~~P~L~~L~i  338 (428)
                      ++..+|+|+.|+=
T Consensus       246 il~~~P~L~~LDg  258 (267)
T 3rw6_A          246 IRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHCTTCCEESS
T ss_pred             HHHHCcccCeECC
Confidence            8899999998863

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=89.35  E-value=0.2  Score=41.36  Aligned_cols=82  Identities=11%  Similarity=0.070  Sum_probs=47.3

Q ss_pred             CCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEEeecCCCCchhHHHHHHHhCC
Q 014227          253 PQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLTITEPNCESLLGLSFVLKACP  331 (428)
Q Consensus       253 p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P  331 (428)
                      +.|+.+++.......+..  ..+ ..+++|+.|+++...+...... +..+++|++|+|..+......    ...+..++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~--~~~-~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~----~~~~~~l~  105 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEP--GVF-DHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP----RGAFDNLK  105 (174)
T ss_dssp             TTCSEEECCSSCCCCCCT--TTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCT
T ss_pred             CCCcEEEeCCCCccccCH--HHh-cCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeC----HHHhcccc
Confidence            677888876655443110  122 6778888888877744332111 356678888877544322211    12356677


Q ss_pred             CccEEEEEEe
Q 014227          332 FLQKLVIKIW  341 (428)
Q Consensus       332 ~L~~L~i~~~  341 (428)
                      +|+.|++...
T Consensus       106 ~L~~L~L~~N  115 (174)
T 2r9u_A          106 SLTHIYLYNN  115 (174)
T ss_dssp             TCSEEECCSS
T ss_pred             CCCEEEeCCC
Confidence            8888877654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=88.70  E-value=0.48  Score=44.99  Aligned_cols=12  Identities=42%  Similarity=0.891  Sum_probs=6.6

Q ss_pred             HHhCCCccEEEE
Q 014227          327 LKACPFLQKLVI  338 (428)
Q Consensus       327 L~~~P~L~~L~i  338 (428)
                      +..|++|+.+.+
T Consensus       296 F~~c~~L~~l~l  307 (401)
T 4fdw_A          296 LEGCPKLARFEI  307 (401)
T ss_dssp             TTTCTTCCEECC
T ss_pred             hhCCccCCeEEe
Confidence            345566665555

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=83.82  E-value=0.94  Score=42.69  Aligned_cols=168  Identities=17%  Similarity=0.175  Sum_probs=83.1

Q ss_pred             CCCCCcccceEEeeeE--EeehHHHHHHHhcCCcccceeeccc-----------CCceeeEEecCCCCcceEEeeecCCc
Q 014227          159 GLSGIKSLRSLCLNAL--KVSGEVLEFFIHSCPHLEHLYVANS-----------SELLSLKVVGSSIPLKYLDIHYCYSM  225 (428)
Q Consensus       159 ~~~~~~~L~~L~L~~~--~~~~~~l~~ll~~cp~Le~L~L~~~-----------~~~~~l~i~~~~~~L~~L~l~~c~~l  225 (428)
                      .+.+|.+|+.+.+..-  .+.+.    .+.+|+.|+.+.+...           ..+..+.++.....+..-...+|..+
T Consensus       180 ~F~~c~~L~~i~l~~~~~~I~~~----~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l  255 (394)
T 4fs7_A          180 LFSGCGKLKSIKLPRNLKIIRDY----CFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDL  255 (394)
T ss_dssp             TTTTCTTCCBCCCCTTCCEECTT----TTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSC
T ss_pred             cccCCCCceEEEcCCCceEeCch----hhccccccceeecCCCceEeehhhcccCCCceEEECCCceecccccccccccc
Confidence            3557888998887532  23333    3677888888877432           22333333321111111111233333


Q ss_pred             ceEEEE-------------CCCcceEEEcceee-eeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeee
Q 014227          226 KEIEIS-------------ASSLVSFRYSGKDI-KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCN  291 (428)
Q Consensus       226 ~~i~i~-------------ap~L~~L~~~~~~~-~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~  291 (428)
                      +.+.+.             ++.++...+..... ...+..+.+|+++.+... ...++.  ... .+|.+|+.++|...-
T Consensus       256 ~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~--~aF-~~c~~L~~i~lp~~v  331 (394)
T 4fs7_A          256 ESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGE--EAF-ESCTSLVSIDLPYLV  331 (394)
T ss_dssp             CEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEECT--TTT-TTCTTCCEECCCTTC
T ss_pred             eeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccc-cceech--hhh-cCCCCCCEEEeCCcc
Confidence            333321             23344433332222 123456778888877432 111110  112 788999999885331


Q ss_pred             eeecccCCCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEE
Q 014227          292 EVFMEFGHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIK  339 (428)
Q Consensus       292 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~  339 (428)
                      .......+..+.+|+++.+...   -....  ..-+..|++|+++.|.
T Consensus       332 ~~I~~~aF~~c~~L~~i~lp~~---l~~I~--~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          332 EEIGKRSFRGCTSLSNINFPLS---LRKIG--ANAFQGCINLKKVELP  374 (394)
T ss_dssp             CEECTTTTTTCTTCCEECCCTT---CCEEC--TTTBTTCTTCCEEEEE
T ss_pred             cEEhHHhccCCCCCCEEEECcc---ccEeh--HHHhhCCCCCCEEEEC
Confidence            1111112566788888877211   11111  1235789999999884

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=81.55  E-value=2  Score=39.37  Aligned_cols=77  Identities=18%  Similarity=0.097  Sum_probs=41.5

Q ss_pred             cCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecCCC-CchhHHHHHH
Q 014227          249 VGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNC-ESLLGLSFVL  327 (428)
Q Consensus       249 ~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~lL  327 (428)
                      +.++++|+.+++..+....+..  ..+ ..+++|+.|+|+...+....-......+|+.|.|..+...+ ....++...+
T Consensus        52 ~~~l~~L~~L~l~~N~l~~~~~--~~~-~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~~  128 (347)
T 2ifg_A           52 LRGLGELRNLTIVKSGLRFVAP--DAF-HFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWE  128 (347)
T ss_dssp             SCSCCCCSEEECCSSCCCEECT--TGG-GSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGGHHHHHHH
T ss_pred             hccccCCCEEECCCCccceeCH--HHh-cCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCccCCCccHHHHHHH
Confidence            5567777777776654443110  122 67888888888877543211111112238888886553332 3344555554


Q ss_pred             H
Q 014227          328 K  328 (428)
Q Consensus       328 ~  328 (428)
                      +
T Consensus       129 ~  129 (347)
T 2ifg_A          129 E  129 (347)
T ss_dssp             H
T ss_pred             H
Confidence            4

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	428
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	1e-04
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	3e-04
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	7e-04

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.9 bits (90), Expect = 1e-04
 Identities = 9/43 (20%), Positives = 20/43 (46%)

Query: 21 DWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWNFTTAL 63
          D  +  P +I + I + L  ++   +  +S  W  +   +T+L
Sbjct: 4  DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL 46

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 3e-04
 Identities = 8/36 (22%), Positives = 18/36 (50%)

Query: 21 DWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYL 56
          D+ S  P ++ + ++S L  K+  + +     W+ L
Sbjct: 17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (81), Expect = 7e-04
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 23 FSKFPDDILVNIISRLTLKEAARTSVLSSRWKYL 56
          +   PD++L+ I S L L E  + S +  RW  L
Sbjct: 1  WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL 34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	428
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.06
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.02
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.01
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.66
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.63
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.28
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.2
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.12
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.11
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.08
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.07
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.02
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.96
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.96
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.77
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.58
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.54
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.54
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.51
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.46
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.37
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.35
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.33
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.11
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	96.98
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	96.85
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	96.52
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	96.48
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	96.34
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	96.02
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	95.95
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	95.81
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	95.55
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	95.31
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.16
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.43
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	94.41
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.09
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.74
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	93.58
d2ifga3	156	High affinity nerve growth factor receptor, N-term	93.52
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	90.91
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	90.19
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	89.91
d2ifga3	156	High affinity nerve growth factor receptor, N-term	85.69

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=4.7e-11  Score=72.83  Aligned_cols=35  Identities=34%  Similarity=0.594  Sum_probs=32.8

Q ss_pred             CCCCcHHHHHHHHhcCChHHHHHHHHhhHHHhhhc
Q 014227           23 FSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLW   57 (428)
Q Consensus        23 ~s~LPd~iL~~Ils~L~~~d~~~~s~vskrWr~lw   57 (428)
                      |+.||+||+.+||++||.+|+++++.|||+|+++-
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~   35 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   35 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            56899999999999999999999999999999863

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=2.3e-11  Score=109.74  Aligned_cols=167  Identities=20%  Similarity=0.291  Sum_probs=91.0

Q ss_pred             CCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceee---EEecCCCCcceEEeeecCCcceE------EEE
Q 014227          161 SGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSL---KVVGSSIPLKYLDIHYCYSMKEI------EIS  231 (428)
Q Consensus       161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l---~i~~~~~~L~~L~l~~c~~l~~i------~i~  231 (428)
                      .+|++|++|+|.++.+.+..+.. ++.||+|+.|++.+|..++..   .+...+++|++|++++|..+..-      .-.
T Consensus        68 ~~c~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~  146 (284)
T d2astb2          68 SQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  146 (284)
T ss_dssp             TTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             HhCCCcccccccccCCCcHHHHH-HhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccc
Confidence            35677777777777666555544 456777777777777665421   12234577777777777543211      112


Q ss_pred             CCCcceEEEcceeee-------eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeee-eeecccC-CCCC
Q 014227          232 ASSLVSFRYSGKDIK-------LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCN-EVFMEFG-HWEL  302 (428)
Q Consensus       232 ap~L~~L~~~~~~~~-------~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~-~~~~~~~-~~~~  302 (428)
                      +++|+.|.+.|+...       ....++|+|+++++..+...+ +..+..+ ..+++|++|.++.+. .....+. ...+
T Consensus       147 ~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~it-d~~~~~l-~~~~~L~~L~L~~C~~i~~~~l~~L~~~  224 (284)
T d2astb2         147 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK-NDCFQEF-FQLNYLQHLSLSRCYDIIPETLLELGEI  224 (284)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC-GGGGGGG-GGCTTCCEEECTTCTTCCGGGGGGGGGC
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccCCC-chhhhhh-cccCcCCEEECCCCCCCChHHHHHHhcC
Confidence            466777776654211       112356677777765443221 1111222 556777777776542 2222222 4556


Q ss_pred             CCccEEEEEeecCCCCchhHHHHHHHhCCCcc
Q 014227          303 PKLLHLKLTITEPNCESLLGLSFVLKACPFLQ  334 (428)
Q Consensus       303 ~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~  334 (428)
                      ++|++|++.    +...+.++..+.+.||+|+
T Consensus       225 ~~L~~L~l~----~~~~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         225 PTLKTLQVF----GIVPDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             TTCCEEECT----TSSCTTCHHHHHHHSTTSE
T ss_pred             CCCCEEeee----CCCCHHHHHHHHHhCcccc
Confidence            777777762    2233445566666777765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=4e-11  Score=108.14  Aligned_cols=175  Identities=19%  Similarity=0.103  Sum_probs=105.8

Q ss_pred             CCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCce-eeEEecCCCCcceEEeeecCCcceE-----EEECCCc
Q 014227          162 GIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELL-SLKVVGSSIPLKYLDIHYCYSMKEI-----EISASSL  235 (428)
Q Consensus       162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~-~l~i~~~~~~L~~L~l~~c~~l~~i-----~i~ap~L  235 (428)
                      ...+|++|+|+++.+.++.+..++.+||+|++|.+.+|.... .+..-..+++|++|++++|..++..     .-.+|+|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            357999999999999999999999999999999999996321 1111234689999999999765422     1245888


Q ss_pred             ceEEEccee-ee-----e-ecCCCCCeeEEEEeccCcc-hhhHHHhhccccCCcceeEEeeeee-eeecccC-CCCCCCc
Q 014227          236 VSFRYSGKD-IK-----L-HVGNVPQLVDVVIHGAPLF-QVRYFIGLVVCCFPQLKTLDLECCN-EVFMEFG-HWELPKL  305 (428)
Q Consensus       236 ~~L~~~~~~-~~-----~-~~~~~p~L~~l~l~~~~~~-~~~~~~~l~~~~~~~l~~L~l~~~~-~~~~~~~-~~~~~~L  305 (428)
                      ++|++.++. +.     . .....+.|+.+.+..+... +...+..+. ..+++|++|+++.+. .....+. ...+++|
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~-~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L  202 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV-RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL  202 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH-HHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccc-cccccccccccccccCCCchhhhhhcccCcC
Confidence            888877641 10     0 1123466777777543211 111111333 667777777776542 2222222 4456677


Q ss_pred             cEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEE
Q 014227          306 LHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKI  340 (428)
Q Consensus       306 ~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~  340 (428)
                      ++|+|..  +...+..++.. +..+|+|+.|++.+
T Consensus       203 ~~L~L~~--C~~i~~~~l~~-L~~~~~L~~L~l~~  234 (284)
T d2astb2         203 QHLSLSR--CYDIIPETLLE-LGEIPTLKTLQVFG  234 (284)
T ss_dssp             CEEECTT--CTTCCGGGGGG-GGGCTTCCEEECTT
T ss_pred             CEEECCC--CCCCChHHHHH-HhcCCCCCEEeeeC
Confidence            7776632  22222333322 34567777776643

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=5.8e-09  Score=78.06  Aligned_cols=37  Identities=22%  Similarity=0.481  Sum_probs=35.6

Q ss_pred             cccCCCCcHHHHHHHHhcCChHHHHHHHHhhHHHhhh
Q 014227           20 EDWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYL   56 (428)
Q Consensus        20 ~D~~s~LPd~iL~~Ils~L~~~d~~~~s~vskrWr~l   56 (428)
                      .|.|+.||+||+.+||++|+.+|+++++.|||+|+.+
T Consensus        16 ~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l   52 (102)
T d2ovrb1          16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (102)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             cCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            6999999999999999999999999999999999975

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.63  E-value=2.2e-09  Score=79.96  Aligned_cols=39  Identities=18%  Similarity=0.401  Sum_probs=36.1

Q ss_pred             cccCCCCcHHHHHHHHhcCChHHHHHHHHhhHHHhhhcc
Q 014227           20 EDWFSKFPDDILVNIISRLTLKEAARTSVLSSRWKYLWN   58 (428)
Q Consensus        20 ~D~~s~LPd~iL~~Ils~L~~~d~~~~s~vskrWr~lw~   58 (428)
                      .|.|+.||+||+.+||++|+.+|+++++.|||+|+++..
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~   41 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIR   41 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHH
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence            588999999999999999999999999999999987543

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.1e-07  Score=72.89  Aligned_cols=37  Identities=27%  Similarity=0.536  Sum_probs=34.4

Q ss_pred             cccCCCCc----HHHHHHHHhcCChHHHHHHHHhhHHHhhh
Q 014227           20 EDWFSKFP----DDILVNIISRLTLKEAARTSVLSSRWKYL   56 (428)
Q Consensus        20 ~D~~s~LP----d~iL~~Ils~L~~~d~~~~s~vskrWr~l   56 (428)
                      .|.++.||    |||+.+||+||+.+|++++++|||+|+++
T Consensus         8 ~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l   48 (118)
T d1p22a1           8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (118)
T ss_dssp             CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             ccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            58899999    59999999999999999999999999874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.20  E-value=3.2e-07  Score=78.95  Aligned_cols=164  Identities=13%  Similarity=0.105  Sum_probs=85.7

Q ss_pred             CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEE-EECCCcceE
Q 014227          160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIE-ISASSLVSF  238 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~-i~ap~L~~L  238 (428)
                      +..+++|++|+|++..+.+-.   -+..++.|+.|.+.++... .+.--..+++|+.+.+.+|....... ...+.+..+
T Consensus        59 l~~l~~L~~L~ls~n~i~~~~---~l~~l~~l~~l~~~~n~~~-~i~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l  134 (227)
T d1h6ua2          59 VQYLNNLIGLELKDNQITDLA---PLKNLTKITELELSGNPLK-NVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL  134 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG---GGTTCCSCCEEECCSCCCS-CCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEE
T ss_pred             HhcCCCCcEeecCCceeeccc---ccccccccccccccccccc-ccccccccccccccccccccccccchhccccchhhh
Confidence            456889999999888765421   1678889998888877532 22211245777777777665211100 123455555


Q ss_pred             EEcceee--eeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecCC
Q 014227          239 RYSGKDI--KLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPN  316 (428)
Q Consensus       239 ~~~~~~~--~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  316 (428)
                      .+.+...  ...+..+++|+.+.+..+...+...    + ..+++|+.|+++++.... ..+...+++|++|+|..+.- 
T Consensus       135 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~----l-~~l~~L~~L~Ls~n~l~~-l~~l~~l~~L~~L~Ls~N~l-  207 (227)
T d1h6ua2         135 YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP----L-ANLSKLTTLKADDNKISD-ISPLASLPNLIEVHLKNNQI-  207 (227)
T ss_dssp             ECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG----G-TTCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECTTSCC-
T ss_pred             hchhhhhchhhhhccccccccccccccccccchh----h-cccccceecccCCCccCC-ChhhcCCCCCCEEECcCCcC-
Confidence            5544322  1223455566666654443322111    1 456666666665553221 11144556666666633211 


Q ss_pred             CCchhHHHHHHHhCCCccEEEEE
Q 014227          317 CESLLGLSFVLKACPFLQKLVIK  339 (428)
Q Consensus       317 ~~~~~~l~~lL~~~P~L~~L~i~  339 (428)
                       .+..    -++++++|+.|+|+
T Consensus       208 -t~i~----~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         208 -SDVS----PLANTSNLFIVTLT  225 (227)
T ss_dssp             -CBCG----GGTTCTTCCEEEEE
T ss_pred             -CCCc----ccccCCCCCEEEee
Confidence             1111    14566666666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.12  E-value=3.4e-07  Score=77.83  Aligned_cols=145  Identities=19%  Similarity=0.175  Sum_probs=72.4

Q ss_pred             CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEEECCCcceEE
Q 014227          160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFR  239 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~  239 (428)
                      +..|++|++|+|++..+.+-  .. ++.+++|+.|.+.++.. ..+.--..+++|+.|.+.++.. ..+           
T Consensus        64 l~~l~~L~~L~L~~n~i~~l--~~-~~~l~~L~~L~l~~n~i-~~l~~l~~l~~L~~L~l~~~~~-~~~-----------  127 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTDI--KP-LANLKNLGWLFLDENKV-KDLSSLKDLKKLKSLSLEHNGI-SDI-----------  127 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCC-CCGGGGTTCTTCCEEECTTSCC-CCC-----------
T ss_pred             HhhCCCCCEEeCCCccccCc--cc-cccCccccccccccccc-cccccccccccccccccccccc-ccc-----------
Confidence            34567777777777665431  11 45667777777766542 2221112235555555555431 100           


Q ss_pred             EcceeeeeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecCCCCc
Q 014227          240 YSGKDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNCES  319 (428)
Q Consensus       240 ~~~~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  319 (428)
                             -.+..++.++.+++......+..    .. ..+++|+.+.++.+.... ..+...+++|++|++..+.-.  +
T Consensus       128 -------~~l~~l~~l~~l~~~~n~l~~~~----~~-~~l~~L~~l~l~~n~l~~-i~~l~~l~~L~~L~Ls~N~i~--~  192 (210)
T d1h6ta2         128 -------NGLVHLPQLESLYLGNNKITDIT----VL-SRLTKLDTLSLEDNQISD-IVPLAGLTKLQNLYLSKNHIS--D  192 (210)
T ss_dssp             -------GGGGGCTTCCEEECCSSCCCCCG----GG-GGCTTCSEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCC--B
T ss_pred             -------ccccccccccccccccccccccc----cc-cccccccccccccccccc-cccccCCCCCCEEECCCCCCC--C
Confidence                   01234455555555433322211    11 566777777776653321 112556677777777443211  1


Q ss_pred             hhHHHHHHHhCCCccEEEEE
Q 014227          320 LLGLSFVLKACPFLQKLVIK  339 (428)
Q Consensus       320 ~~~l~~lL~~~P~L~~L~i~  339 (428)
                      ..    -+..+++|+.|+|.
T Consensus       193 l~----~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         193 LR----ALAGLKNLDVLELF  208 (210)
T ss_dssp             CG----GGTTCTTCSEEEEE
T ss_pred             Ch----hhcCCCCCCEEEcc
Confidence            21    24667777777775

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.11  E-value=3.8e-07  Score=76.83  Aligned_cols=124  Identities=10%  Similarity=0.100  Sum_probs=58.0

Q ss_pred             CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEEECCCcceEE
Q 014227          160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFR  239 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~  239 (428)
                      +..|++|++|+|++..+.+-.  . +.++|+|+.|.+.++..... ..-..++.|+.|.+.+|.... +           
T Consensus        58 l~~l~nL~~L~Ls~N~l~~~~--~-l~~l~~L~~L~l~~n~~~~~-~~l~~l~~L~~L~l~~~~~~~-~-----------  121 (199)
T d2omxa2          58 VEYLNNLTQINFSNNQLTDIT--P-LKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLFNNQITD-I-----------  121 (199)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCC-GGGTTCTTCSEEECCSSCCCC-C-----------
T ss_pred             cccCCCcCcCccccccccCcc--c-ccCCcccccccccccccccc-ccccccccccccccccccccc-c-----------
Confidence            345667777777766654321  1 55666777776666543221 111233455555554443110 0           


Q ss_pred             EcceeeeeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEe
Q 014227          240 YSGKDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTI  312 (428)
Q Consensus       240 ~~~~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~  312 (428)
                             ..+..+++|+.+++..+....++    -+ ..+++++.|.+.++..... -+...+++|++|++..
T Consensus       122 -------~~~~~l~~L~~L~l~~n~l~~~~----~l-~~~~~L~~L~l~~n~l~~l-~~l~~l~~L~~L~ls~  181 (199)
T d2omxa2         122 -------DPLKNLTNLNRLELSSNTISDIS----AL-SGLTSLQQLNFSSNQVTDL-KPLANLTTLERLDISS  181 (199)
T ss_dssp             -------GGGTTCTTCSEEECCSSCCCCCG----GG-TTCTTCSEEECCSSCCCCC-GGGTTCTTCCEEECCS
T ss_pred             -------cccchhhhhHHhhhhhhhhcccc----cc-cccccccccccccccccCC-ccccCCCCCCEEECCC
Confidence                   11334445555555433222211    11 4556666666655432211 1245556666666643

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.08  E-value=7.5e-07  Score=74.89  Aligned_cols=119  Identities=13%  Similarity=0.159  Sum_probs=69.2

Q ss_pred             CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEEECCCcceEE
Q 014227          160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFR  239 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~  239 (428)
                      +.++++|++|.+.++.+..-.   -+++++.|+.|.+.+|..... .....+++|+.|.++++. +..+.          
T Consensus        80 l~~l~~L~~L~l~~n~~~~~~---~l~~l~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~----------  144 (199)
T d2omxa2          80 LKNLTKLVDILMNNNQIADIT---PLANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNT-ISDIS----------  144 (199)
T ss_dssp             GTTCTTCCEEECCSSCCCCCG---GGTTCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSC-CCCCG----------
T ss_pred             ccCCccccccccccccccccc---ccccccccccccccccccccc-cccchhhhhHHhhhhhhh-hcccc----------
Confidence            567999999999998764421   177899999999988865432 112245777777777664 22111          


Q ss_pred             EcceeeeeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEE
Q 014227          240 YSGKDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHL  308 (428)
Q Consensus       240 ~~~~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L  308 (428)
                              .+..+++|+.+.+..+...++..    + ..+++|+.|+++++....  ++ ...+++|++|
T Consensus       145 --------~l~~~~~L~~L~l~~n~l~~l~~----l-~~l~~L~~L~ls~N~i~~--i~~l~~L~~L~~L  199 (199)
T d2omxa2         145 --------ALSGLTSLQQLNFSSNQVTDLKP----L-ANLTTLERLDISSNKVSD--ISVLAKLTNLESL  199 (199)
T ss_dssp             --------GGTTCTTCSEEECCSSCCCCCGG----G-TTCTTCCEEECCSSCCCC--CGGGGGCTTCSEE
T ss_pred             --------cccccccccccccccccccCCcc----c-cCCCCCCEEECCCCCCCC--CccccCCCCCCcC
Confidence                    12334444544444333222211    1 567777777776663322  22 4455566554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.07  E-value=8.9e-07  Score=75.13  Aligned_cols=122  Identities=17%  Similarity=0.139  Sum_probs=71.8

Q ss_pred             CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEEECCCcceEE
Q 014227          160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFR  239 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~  239 (428)
                      +..+++|+.|++.++.+.+  +. -+.++|.|+.|.+.++.... +..-..++.++.+.+..+. +....          
T Consensus        86 ~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~~~~~~-~~~l~~l~~l~~l~~~~n~-l~~~~----------  150 (210)
T d1h6ta2          86 LANLKNLGWLFLDENKVKD--LS-SLKDLKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNK-ITDIT----------  150 (210)
T ss_dssp             GTTCTTCCEEECCSSCCCC--GG-GGTTCTTCCEEECTTSCCCC-CGGGGGCTTCCEEECCSSC-CCCCG----------
T ss_pred             cccCccccccccccccccc--cc-cccccccccccccccccccc-ccccccccccccccccccc-ccccc----------
Confidence            3568999999999988764  22 27789999999999886432 1111234666766665554 11110          


Q ss_pred             EcceeeeeecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEE
Q 014227          240 YSGKDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLT  311 (428)
Q Consensus       240 ~~~~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~  311 (428)
                              ....+++|+.+.+......++..    + ..+++|+.|+++++....  ++ ...+++|++|+|+
T Consensus       151 --------~~~~l~~L~~l~l~~n~l~~i~~----l-~~l~~L~~L~Ls~N~i~~--l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         151 --------VLSRLTKLDTLSLEDNQISDIVP----L-AGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELF  208 (210)
T ss_dssp             --------GGGGCTTCSEEECCSSCCCCCGG----G-TTCTTCCEEECCSSCCCB--CGGGTTCTTCSEEEEE
T ss_pred             --------ccccccccccccccccccccccc----c-cCCCCCCEEECCCCCCCC--ChhhcCCCCCCEEEcc
Confidence                    11234445554444333322111    1 567777777777664432  23 5667788888774

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.02  E-value=1.4e-06  Score=74.81  Aligned_cols=163  Identities=13%  Similarity=0.098  Sum_probs=102.0

Q ss_pred             CCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEE--EECCCcceEE
Q 014227          162 GIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIE--ISASSLVSFR  239 (428)
Q Consensus       162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~L~  239 (428)
                      .+.+|+.|++.++.+.+  +.. +..+|+|+.|++.++....... -..+++|+.+.+.++. ...+.  -..++|+.+.
T Consensus        39 ~l~~L~~L~l~~~~i~~--l~~-l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~-~~~i~~l~~l~~L~~l~  113 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTT--IEG-VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLD  113 (227)
T ss_dssp             HHHTCCEEECTTSCCCC--CTT-GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEE
T ss_pred             HcCCcCEEECCCCCCCc--chh-HhcCCCCcEeecCCceeecccc-cccccccccccccccc-ccccccccccccccccc
Confidence            47899999999998754  222 6889999999999986432211 2345788888888775 22221  1347788888


Q ss_pred             Ecceeee--eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecCCC
Q 014227          240 YSGKDIK--LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNC  317 (428)
Q Consensus       240 ~~~~~~~--~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  317 (428)
                      +.+....  ..+...+.+..+.+..........    + ..+++++.|.+..+... ...+...+++|++|++..+..  
T Consensus       114 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~-~~~~~L~~L~l~~n~~~-~~~~l~~l~~L~~L~Ls~n~l--  185 (227)
T d1h6ua2         114 LTSTQITDVTPLAGLSNLQVLYLDLNQITNISP----L-AGLTNLQYLSIGNAQVS-DLTPLANLSKLTTLKADDNKI--  185 (227)
T ss_dssp             CTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG----G-GGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSSCC--
T ss_pred             cccccccccchhccccchhhhhchhhhhchhhh----h-ccccccccccccccccc-cchhhcccccceecccCCCcc--
Confidence            7765431  234566677777765544332111    2 67778888888766332 112256678888888844321  


Q ss_pred             CchhHHHHHHHhCCCccEEEEEEe
Q 014227          318 ESLLGLSFVLKACPFLQKLVIKIW  341 (428)
Q Consensus       318 ~~~~~l~~lL~~~P~L~~L~i~~~  341 (428)
                      .+..    .+..+|+|+.|++...
T Consensus       186 ~~l~----~l~~l~~L~~L~Ls~N  205 (227)
T d1h6ua2         186 SDIS----PLASLPNLIEVHLKNN  205 (227)
T ss_dssp             CCCG----GGGGCTTCCEEECTTS
T ss_pred             CCCh----hhcCCCCCCEEECcCC
Confidence            1222    1567888888888643

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.96  E-value=2.8e-07  Score=84.67  Aligned_cols=230  Identities=15%  Similarity=0.079  Sum_probs=119.2

Q ss_pred             CCCcccceEEeeeEEee---h------HHHHHHHhcCCcccceeecccCCce----ee-EEecCCCCcceEEeeecCCcc
Q 014227          161 SGIKSLRSLCLNALKVS---G------EVLEFFIHSCPHLEHLYVANSSELL----SL-KVVGSSIPLKYLDIHYCYSMK  226 (428)
Q Consensus       161 ~~~~~L~~L~L~~~~~~---~------~~l~~ll~~cp~Le~L~L~~~~~~~----~l-~i~~~~~~L~~L~l~~c~~l~  226 (428)
                      ...++|+.|.+.++...   +      ..+...+..|++|+.|+|.+|..-.    .+ ..-..+++|++|.+.+|.. .
T Consensus        56 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l-~  134 (344)
T d2ca6a1          56 ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL-G  134 (344)
T ss_dssp             TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC-H
T ss_pred             HhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheecccccc-c
Confidence            34577777777665421   1      1233445567777777777664211    00 1111235666666666541 1


Q ss_pred             eEE--EECCCcceEEEcceeeeeecCCCCCeeEEEEeccCcch--hhHHHhhccccCCcceeEEeeeeeeeecc----c-
Q 014227          227 EIE--ISASSLVSFRYSGKDIKLHVGNVPQLVDVVIHGAPLFQ--VRYFIGLVVCCFPQLKTLDLECCNEVFME----F-  297 (428)
Q Consensus       227 ~i~--i~ap~L~~L~~~~~~~~~~~~~~p~L~~l~l~~~~~~~--~~~~~~l~~~~~~~l~~L~l~~~~~~~~~----~-  297 (428)
                      ...  .-+..|..+.     ........+.|+.+.+......+  ...+...+ ..++.++.|.+..+......    + 
T Consensus       135 ~~~~~~l~~~l~~~~-----~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l-~~~~~L~~L~L~~n~i~~~g~~~~l~  208 (344)
T d2ca6a1         135 PQAGAKIARALQELA-----VNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF-QSHRLLHTVKMVQNGIRPEGIEHLLL  208 (344)
T ss_dssp             HHHHHHHHHHHHHHH-----HHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH-HHCTTCCEEECCSSCCCHHHHHHHHH
T ss_pred             ccccccccccccccc-----cccccccCcccceeecccccccccccccccchh-hhhhhhcccccccccccccccccchh
Confidence            000  0000000000     00011245566666665544433  22333444 77889999999776443211    1 


Q ss_pred             C-CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcc--cccccCCcCccCCccEEEEeeee-eC
Q 014227          298 G-HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIG--EKRHQIPVHLHQHLKVVELHEFR-WL  373 (428)
Q Consensus       298 ~-~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~--~~~~~~p~~~~~~L~~v~i~~f~-g~  373 (428)
                      . ...+++|++|+|..+..+......+...+..+|+|+.|.+..+.-. ..+  ..-.....+....|+++.+.+-. +.
T Consensus       209 ~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~-~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         209 EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS-ARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             TTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC-HHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             hhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccC-chhhHHHHHHhhhccCCCCCEEECCCCcCCh
Confidence            1 5678899999985443222334456677889999999998654210 011  01011122334678888887533 12


Q ss_pred             CchHHHHHHHHhcccccccEEEecC
Q 014227          374 QIDPEIAFFIFRNAKVLEKMIIKPS  398 (428)
Q Consensus       374 ~~e~~~~~~ll~~a~~L~~l~i~~~  398 (428)
                      +.-..+++.+..+.+.|+.+.+...
T Consensus       288 ~~~~~l~~~l~~~~~~L~~L~l~~N  312 (344)
T d2ca6a1         288 DAVRTLKTVIDEKMPDLLFLELNGN  312 (344)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             HHHHHHHHHHHccCCCCCEEECCCC
Confidence            2334556665568889999988643

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=1.7e-06  Score=76.16  Aligned_cols=77  Identities=18%  Similarity=0.121  Sum_probs=47.5

Q ss_pred             cccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEE---EECCCcceEEE
Q 014227          164 KSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIE---ISASSLVSFRY  240 (428)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~---i~ap~L~~L~~  240 (428)
                      ++|++|+|.+..+..-. ...+.++++|++|.|.++. ++.+.....+++|+.|+++++. +..+.   ...++|+.|.+
T Consensus        31 ~~l~~L~Ls~N~i~~l~-~~~f~~l~~L~~L~L~~N~-l~~l~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~l  107 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDV  107 (266)
T ss_dssp             TTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEEC
T ss_pred             cCCCEEECcCCcCCCcC-HHHhhcccccccccccccc-cccccccccccccccccccccc-ccccccccccccccccccc
Confidence            68999999987653211 1126788999999998885 3444444456788888887765 22111   12355555555


Q ss_pred             cce
Q 014227          241 SGK  243 (428)
Q Consensus       241 ~~~  243 (428)
                      .+.
T Consensus       108 ~~~  110 (266)
T d1p9ag_         108 SFN  110 (266)
T ss_dssp             CSS
T ss_pred             ccc
Confidence            443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=9.2e-06  Score=71.32  Aligned_cols=161  Identities=17%  Similarity=0.127  Sum_probs=99.2

Q ss_pred             CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEE----EECCCc
Q 014227          160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIE----ISASSL  235 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~----i~ap~L  235 (428)
                      +.++++|++|+|.+..+..-  . ..+.+|.|+.|.|.++...........+++|+.|++.++.. ..+.    ...+++
T Consensus        51 f~~l~~L~~L~L~~N~l~~l--~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~l~~l  126 (266)
T d1p9ag_          51 LMPYTRLTQLNLDRAELTKL--Q-VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGEL  126 (266)
T ss_dssp             GTTCTTCCEEECTTSCCCEE--E-CCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCC-CCCCSSTTTTCTTC
T ss_pred             hhcccccccccccccccccc--c-ccccccccccccccccccccccccccccccccccccccccc-ceeecccccccccc
Confidence            45789999999998865431  1 13578999999999886433323334568899999987762 2221    123677


Q ss_pred             ceEEEcceeee----eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC--CCCCCCccEEE
Q 014227          236 VSFRYSGKDIK----LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG--HWELPKLLHLK  309 (428)
Q Consensus       236 ~~L~~~~~~~~----~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~--~~~~~~L~~L~  309 (428)
                      +.|.+.+....    ..+..++.++.+.+..+....+..  +.+ ..+++|+.|+++...+.  .+|  ...+++|+.|.
T Consensus       127 ~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~--~~~-~~l~~L~~L~Ls~N~L~--~lp~~~~~~~~L~~L~  201 (266)
T d1p9ag_         127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA--GLL-NGLENLDTLLLQENSLY--TIPKGFFGSHLLPFAF  201 (266)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT--TTT-TTCTTCCEEECCSSCCC--CCCTTTTTTCCCSEEE
T ss_pred             ccccccccccceeccccccccccchhcccccccccccCc--ccc-ccccccceeecccCCCc--ccChhHCCCCCCCEEE
Confidence            77777665331    124467778888776654433110  223 67788888888777543  233  55567788888


Q ss_pred             EEeecCCC-CchhHHHHHHHh
Q 014227          310 LTITEPNC-ESLLGLSFVLKA  329 (428)
Q Consensus       310 l~~~~~~~-~~~~~l~~lL~~  329 (428)
                      |..+-..+ ....++...++.
T Consensus       202 L~~Np~~CdC~~~~l~~wl~~  222 (266)
T d1p9ag_         202 LHGNPWLCNCEILYFRRWLQD  222 (266)
T ss_dssp             CCSCCBCCSGGGHHHHHHHHH
T ss_pred             ecCCCCCCCcchHHHHHHHHh
Confidence            86553222 234455665553

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=6e-06  Score=66.69  Aligned_cols=80  Identities=14%  Similarity=0.077  Sum_probs=50.2

Q ss_pred             CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEE----ECCCc
Q 014227          160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEI----SASSL  235 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i----~ap~L  235 (428)
                      +.++.+|++|+|++..+..  +..+..++++|+.|+|.++.- ..+.--..+++|+.|++++|. +..+.-    ..|+|
T Consensus        14 ~~n~~~lr~L~L~~n~I~~--i~~~~~~l~~L~~L~Ls~N~i-~~l~~~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEI-RKLDGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDL   89 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCC-CEECCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTC
T ss_pred             ccCcCcCcEEECCCCCCCc--cCccccccccCCEEECCCCCC-CccCCcccCcchhhhhccccc-ccCCCcccccccccc
Confidence            3456788889998887644  123456788899999988753 322222345778888888776 444321    24566


Q ss_pred             ceEEEcce
Q 014227          236 VSFRYSGK  243 (428)
Q Consensus       236 ~~L~~~~~  243 (428)
                      +.|.+.+.
T Consensus        90 ~~L~L~~N   97 (162)
T d1a9na_          90 TELILTNN   97 (162)
T ss_dssp             CEEECCSC
T ss_pred             ccceeccc
Confidence            66666554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.54  E-value=1.5e-05  Score=73.54  Aligned_cols=186  Identities=14%  Similarity=0.122  Sum_probs=120.6

Q ss_pred             CCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEE--EECCCcc
Q 014227          159 GLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIE--ISASSLV  236 (428)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~  236 (428)
                      ....+++++.|.+.+..+.+-.   -...++.|++|.+.++... .+..-..+++|+.|.+.++. +..+.  -..++|+
T Consensus       192 ~~~~l~~~~~l~l~~n~i~~~~---~~~~~~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~L~  266 (384)
T d2omza2         192 VLAKLTNLESLIATNNQISDIT---PLGILTNLDELSLNGNQLK-DIGTLASLTNLTDLDLANNQ-ISNLAPLSGLTKLT  266 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCG---GGGGCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSC-CCCCGGGTTCTTCS
T ss_pred             ccccccccceeeccCCccCCCC---cccccCCCCEEECCCCCCC-CcchhhcccccchhccccCc-cCCCCcccccccCC
Confidence            3456899999999988765421   1467899999999988532 22222355889999998876 33221  1358899


Q ss_pred             eEEEcceeee--eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeec
Q 014227          237 SFRYSGKDIK--LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITE  314 (428)
Q Consensus       237 ~L~~~~~~~~--~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  314 (428)
                      .|.+.+....  ..+..++.++.+.+......++.    -+ ..+++++.|+++....... .+...+++|++|++..+.
T Consensus       267 ~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~----~~-~~~~~l~~L~ls~n~l~~l-~~l~~l~~L~~L~L~~n~  340 (384)
T d2omza2         267 ELKLGANQISNISPLAGLTALTNLELNENQLEDIS----PI-SNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFANNK  340 (384)
T ss_dssp             EEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCG----GG-GGCTTCSEEECCSSCCSCC-GGGGGCTTCCEEECCSSC
T ss_pred             EeeccCcccCCCCcccccccccccccccccccccc----cc-chhcccCeEECCCCCCCCC-cccccCCCCCEEECCCCC
Confidence            9998766442  24567778888877655443321    12 7889999999987754332 236788999999995542


Q ss_pred             CCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCc-CccCCccEEEEee
Q 014227          315 PNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPV-HLHQHLKVVELHE  369 (428)
Q Consensus       315 ~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~-~~~~~L~~v~i~~  369 (428)
                      -.  +..    -+..+|+|+.|+++...       ... +++ .-+++|+.+.+.+
T Consensus       341 l~--~l~----~l~~l~~L~~L~l~~N~-------l~~-l~~l~~l~~L~~L~L~~  382 (384)
T d2omza2         341 VS--DVS----SLANLTNINWLSAGHNQ-------ISD-LTPLANLTRITQLGLND  382 (384)
T ss_dssp             CC--CCG----GGGGCTTCCEEECCSSC-------CCB-CGGGTTCTTCSEEECCC
T ss_pred             CC--CCh----hHcCCCCCCEEECCCCc-------CCC-ChhhccCCCCCEeeCCC
Confidence            22  222    25789999999997542       111 221 2246888887753

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=2.7e-05  Score=68.84  Aligned_cols=172  Identities=17%  Similarity=0.156  Sum_probs=70.4

Q ss_pred             CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEe--cCCCCcceEEeeecCCcceEE----EECC
Q 014227          160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVV--GSSIPLKYLDIHYCYSMKEIE----ISAS  233 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~--~~~~~L~~L~l~~c~~l~~i~----i~ap  233 (428)
                      +.++++|+.|++++..+..-. .....+++.++.+.+........+.-.  ..+++|+.|.+..+.. ..+.    -..+
T Consensus        52 f~~l~~L~~L~ls~n~l~~i~-~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~-~~~~~~~~~~~~  129 (284)
T d1ozna_          52 FRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLA  129 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCT
T ss_pred             hhccccccccccccccccccc-cccccccccccccccccccccccccchhhcccccCCEEecCCccc-ccccccccchhc
Confidence            345666666666655432211 012344555555555444333322111  1235566665555541 1111    1124


Q ss_pred             CcceEEEcceeee-e---ecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEE
Q 014227          234 SLVSFRYSGKDIK-L---HVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHL  308 (428)
Q Consensus       234 ~L~~L~~~~~~~~-~---~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L  308 (428)
                      +|+.+.+.+..+. +   .+...++|+++.+.......+..  ..+ .++++|+.+.++........-. +..+++|++|
T Consensus       130 ~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~--~~f-~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L  206 (284)
T d1ozna_         130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE--RAF-RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL  206 (284)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT--TTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             ccchhhhccccccccChhHhccccchhhcccccCcccccch--hhh-ccccccchhhhhhccccccChhHhhhhhhcccc
Confidence            4555555443221 1   13344555555554433221100  111 4455555555544432211101 4444555555


Q ss_pred             EEEeecCCCCchhHHHHHHHhCCCccEEEEEE
Q 014227          309 KLTITEPNCESLLGLSFVLKACPFLQKLVIKI  340 (428)
Q Consensus       309 ~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~  340 (428)
                      ++..+......    ...+..+++|+.|.++.
T Consensus       207 ~l~~N~i~~~~----~~~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         207 YLFANNLSALP----TEALAPLRALQYLRLND  234 (284)
T ss_dssp             ECCSSCCSCCC----HHHHTTCTTCCEEECCS
T ss_pred             ccccccccccc----ccccccccccCEEEecC
Confidence            55332211111    23344555555555543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.51  E-value=7.2e-06  Score=74.88  Aligned_cols=39  Identities=26%  Similarity=0.333  Sum_probs=30.2

Q ss_pred             CCcccceEEeeeEEeehHH---HHHHHhcCCcccceeecccC
Q 014227          162 GIKSLRSLCLNALKVSGEV---LEFFIHSCPHLEHLYVANSS  200 (428)
Q Consensus       162 ~~~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~L~~~~  200 (428)
                      .+++|+.|+|.++.+++..   +...+..++.|+.|.+.+|.
T Consensus        91 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~  132 (344)
T d2ca6a1          91 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG  132 (344)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             hCCCcccccccccccccccccchhhhhcccccchheeccccc
Confidence            4788999999888876643   55566788899999998775

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=6.4e-05  Score=60.35  Aligned_cols=130  Identities=12%  Similarity=0.096  Sum_probs=73.9

Q ss_pred             hcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEEEECCCcceEEEcceeeeeecCCCCCeeEEEEeccCc
Q 014227          186 HSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIEISASSLVSFRYSGKDIKLHVGNVPQLVDVVIHGAPL  265 (428)
Q Consensus       186 ~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~~~~~~~~~~~p~L~~l~l~~~~~  265 (428)
                      .++..|++|+|.++.--..-.+...+++|+.|+++++. +..+.                  .+..+++|+.+.+..+..
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~-i~~l~------------------~~~~l~~L~~L~ls~N~i   75 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE-IRKLD------------------GFPLLRRLKTLLVNNNRI   75 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSC-CCEEC------------------CCCCCSSCCEEECCSSCC
T ss_pred             cCcCcCcEEECCCCCCCccCccccccccCCEEECCCCC-CCccC------------------CcccCcchhhhhcccccc
Confidence            35667788888877522111122334667777776664 33221                  134456666666655544


Q ss_pred             chhhHHHhhccccCCcceeEEeeeeeeeec-cc-CCCCCCCccEEEEEeecCCCCchhH-HHHHHHhCCCccEEEEE
Q 014227          266 FQVRYFIGLVVCCFPQLKTLDLECCNEVFM-EF-GHWELPKLLHLKLTITEPNCESLLG-LSFVLKACPFLQKLVIK  339 (428)
Q Consensus       266 ~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~~~-l~~lL~~~P~L~~L~i~  339 (428)
                      ..+..  .+. ..+++++.|.++.+..... .+ ....+++|++|++..+....  ... -..++..+|+|+.|+-.
T Consensus        76 ~~l~~--~~~-~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~--~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          76 CRIGE--GLD-QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN--KKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             CEECS--CHH-HHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG--STTHHHHHHHHCTTCSEETTE
T ss_pred             cCCCc--ccc-ccccccccceeccccccccccccccccccccchhhcCCCcccc--ccchHHHHHHHCCCcCeeCCC
Confidence            33111  122 6788899999887755432 22 26678889999885543221  111 13467889999988644

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=8.3e-05  Score=63.77  Aligned_cols=194  Identities=14%  Similarity=0.027  Sum_probs=100.9

Q ss_pred             CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEe--cCCCCcceEEeeecCCcceEE----EECCCcc
Q 014227          163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVV--GSSIPLKYLDIHYCYSMKEIE----ISASSLV  236 (428)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~--~~~~~L~~L~l~~c~~l~~i~----i~ap~L~  236 (428)
                      ++++++|+|.+..+..-. ...+.++++|+.|.+.++.....+...  ..++.++++.+..+..+..+.    -..++|+
T Consensus        28 ~~~l~~L~Ls~n~i~~l~-~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~  106 (242)
T d1xwdc1          28 PRNAIELRFVLTKLRVIQ-KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ  106 (242)
T ss_dssp             CSCCSEEEEESCCCCEEC-TTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCC
T ss_pred             CCCCCEEECcCCcCCccC-hhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccc
Confidence            468999999987653210 113678999999999888654433221  245788888888876555443    3468999


Q ss_pred             eEEEcceeee-e-ecCCCCCeeEEEEeccCcchhhHHH-hhcccc-CCcceeEEeeeeeeeecccCCCCCCCccEEEEEe
Q 014227          237 SFRYSGKDIK-L-HVGNVPQLVDVVIHGAPLFQVRYFI-GLVVCC-FPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTI  312 (428)
Q Consensus       237 ~L~~~~~~~~-~-~~~~~p~L~~l~l~~~~~~~~~~~~-~l~~~~-~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~  312 (428)
                      .+.+.+.... . ....+.+++.+.........+..+. ..+ .+ ...++.|.+.......  ++...|...+.+.+..
T Consensus       107 ~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~-~~~~~~l~~L~l~~n~l~~--i~~~~~~~~~l~~~~~  183 (242)
T d1xwdc1         107 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF-VGLSFESVILWLNKNGIQE--IHNCAFNGTQLDELNL  183 (242)
T ss_dssp             EEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSS-TTSBSSCEEEECCSSCCCE--ECTTTTTTCCEEEEEC
T ss_pred             ccccchhhhccccccccccccccccccccccccccccccccc-ccccccceeeecccccccc--cccccccchhhhcccc
Confidence            9988776432 1 2223344444433222111100000 111 22 2467777776553322  2222232332233311


Q ss_pred             ecCCCCchhHH-HHHHHhCCCccEEEEEEecCCCCcccccccCCcCccCCccEEEEeee
Q 014227          313 TEPNCESLLGL-SFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVHLHQHLKVVELHEF  370 (428)
Q Consensus       313 ~~~~~~~~~~l-~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~~~~~~L~~v~i~~f  370 (428)
                        ........+ ...++.+|+|+.|++....       ... +|...+.+|+.++..+.
T Consensus       184 --l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~-------l~~-l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         184 --SDNNNLEELPNDVFHGASGPVILDISRTR-------IHS-LPSYGLENLKKLRARST  232 (242)
T ss_dssp             --TTCTTCCCCCTTTTTTSCCCSEEECTTSC-------CCC-CCSSSCTTCCEEESSSE
T ss_pred             --ccccccccccHHHhcCCCCCCEEECCCCc-------CCc-cCHHHHcCCcccccCcC
Confidence              111111111 2346789999999995431       222 45555666666654443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.35  E-value=3.9e-05  Score=70.58  Aligned_cols=162  Identities=15%  Similarity=0.109  Sum_probs=109.0

Q ss_pred             CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeEEecCCCCcceEEeeecCCcceEE--EECCCcce
Q 014227          160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLKVVGSSIPLKYLDIHYCYSMKEIE--ISASSLVS  237 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~  237 (428)
                      ...+++|++|++.++.+.+-.   .+..++.|+.|.+.++...+... ...+++|+.|.++++.. ..+.  ...+.++.
T Consensus       215 ~~~~~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~~~l-~~~~~~~~~~~l~~  289 (384)
T d2omza2         215 LGILTNLDELSLNGNQLKDIG---TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQI-SNISPLAGLTALTN  289 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCC-CCCGGGTTCTTCSE
T ss_pred             ccccCCCCEEECCCCCCCCcc---hhhcccccchhccccCccCCCCc-ccccccCCEeeccCccc-CCCCcccccccccc
Confidence            345789999999998765521   26789999999999886433222 23458899999987752 2211  12356667


Q ss_pred             EEEcceeee--eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEEeec
Q 014227          238 FRYSGKDIK--LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLTITE  314 (428)
Q Consensus       238 L~~~~~~~~--~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~  314 (428)
                      +...+....  ..+..+++++.+++......++..    + ..+++|+.|.++++....  ++ ...+++|++|++..+.
T Consensus       290 l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~----l-~~l~~L~~L~L~~n~l~~--l~~l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         290 LELNENQLEDISPISNLKNLTYLTLYFNNISDISP----V-SSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQ  362 (384)
T ss_dssp             EECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG----G-GGCTTCCEEECCSSCCCC--CGGGGGCTTCCEEECCSSC
T ss_pred             ccccccccccccccchhcccCeEECCCCCCCCCcc----c-ccCCCCCEEECCCCCCCC--ChhHcCCCCCCEEECCCCc
Confidence            766655331  235677888888887665554322    2 789999999998875432  23 6678899999995542


Q ss_pred             CCCCchhHHHHHHHhCCCccEEEEE
Q 014227          315 PNCESLLGLSFVLKACPFLQKLVIK  339 (428)
Q Consensus       315 ~~~~~~~~l~~lL~~~P~L~~L~i~  339 (428)
                      -.  +..   . +.++|+|+.|+|+
T Consensus       363 l~--~l~---~-l~~l~~L~~L~L~  381 (384)
T d2omza2         363 IS--DLT---P-LANLTRITQLGLN  381 (384)
T ss_dssp             CC--BCG---G-GTTCTTCSEEECC
T ss_pred             CC--CCh---h-hccCCCCCEeeCC
Confidence            22  222   2 6789999999985

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.33  E-value=7.3e-05  Score=66.62  Aligned_cols=40  Identities=25%  Similarity=0.291  Sum_probs=27.2

Q ss_pred             CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccC
Q 014227          160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSS  200 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~  200 (428)
                      +.++++|++|++.++.+..-. ...+.+++.|+.|.+.++.
T Consensus        51 f~~l~~L~~L~l~~n~~~~i~-~~~f~~l~~L~~L~l~~n~   90 (305)
T d1xkua_          51 FKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQ   90 (305)
T ss_dssp             TTTCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSC
T ss_pred             hhccccccccccccccccccc-hhhhhCCCccCEecccCCc
Confidence            456788888888887654311 1226678888888887764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.0001  Score=64.95  Aligned_cols=198  Identities=12%  Similarity=0.049  Sum_probs=117.8

Q ss_pred             CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceee-EEecCCCCcceEEeeecCCcceEEE----ECCCcce
Q 014227          163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSL-KVVGSSIPLKYLDIHYCYSMKEIEI----SASSLVS  237 (428)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~i----~ap~L~~  237 (428)
                      .+++++|+|++..+..-. ...+.+++.|+.|.+.+....... .....+..++++.+.....+..+.-    ..++|+.
T Consensus        31 p~~~~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~  109 (284)
T d1ozna_          31 PAASQRIFLHGNRISHVP-AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (284)
T ss_dssp             CTTCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CCCCCEEECcCCcCCCCC-HHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCE
Confidence            367899999988653211 113678999999999877532211 1111345677776665554444322    2478999


Q ss_pred             EEEcceeee----eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEEe
Q 014227          238 FRYSGKDIK----LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLTI  312 (428)
Q Consensus       238 L~~~~~~~~----~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~  312 (428)
                      |.+.+....    ..+...++|+.+.+.......+..  +.+ ..++++++|+++........-. ...+++|+.|.+..
T Consensus       110 L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~--~~f-~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~  186 (284)
T d1ozna_         110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD--DTF-RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ  186 (284)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EecCCcccccccccccchhcccchhhhccccccccCh--hHh-ccccchhhcccccCcccccchhhhccccccchhhhhh
Confidence            988765431    234567788888887655443210  223 6788999999987754332222 56678888888854


Q ss_pred             ecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCcCccCCccEEEEee--eeeC
Q 014227          313 TEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVHLHQHLKVVELHE--FRWL  373 (428)
Q Consensus       313 ~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~~~~~~L~~v~i~~--f~g~  373 (428)
                      +......    ...+..+++|+.|++............   .  .-..+|+.+.+.+  +.+.
T Consensus       187 N~l~~i~----~~~f~~l~~L~~L~l~~N~i~~~~~~~---~--~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         187 NRVAHVH----PHAFRDLGRLMTLYLFANNLSALPTEA---L--APLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             SCCCEEC----TTTTTTCTTCCEEECCSSCCSCCCHHH---H--TTCTTCCEEECCSSCEECS
T ss_pred             ccccccC----hhHhhhhhhcccccccccccccccccc---c--ccccccCEEEecCCCCCCC
Confidence            4322211    334678899999998754211100000   0  1246788888876  4444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.98  E-value=0.00019  Score=63.86  Aligned_cols=78  Identities=15%  Similarity=0.067  Sum_probs=49.8

Q ss_pred             CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceeeE-EecCCCCcceEEeeecCCcceEE-EECCCcceEEE
Q 014227          163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSLK-VVGSSIPLKYLDIHYCYSMKEIE-ISASSLVSFRY  240 (428)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~-i~~~~~~L~~L~l~~c~~l~~i~-i~ap~L~~L~~  240 (428)
                      .+++++|+|++..+..-. ...+.++++|+.|.+.++....... .-..++.|+.|.+.++. ++.+. ...+.+..|..
T Consensus        30 ~~~l~~L~Ls~N~i~~l~-~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~-l~~l~~~~~~~l~~L~~  107 (305)
T d1xkua_          30 PPDTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMPKTLQELRV  107 (305)
T ss_dssp             CTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCCTTCCEEEC
T ss_pred             CCCCCEEECcCCcCCCcC-hhHhhccccccccccccccccccchhhhhCCCccCEecccCCc-cCcCccchhhhhhhhhc
Confidence            479999999998754210 0126789999999999987543211 11246888999998875 33332 12356666665


Q ss_pred             cc
Q 014227          241 SG  242 (428)
Q Consensus       241 ~~  242 (428)
                      .+
T Consensus       108 ~~  109 (305)
T d1xkua_         108 HE  109 (305)
T ss_dssp             CS
T ss_pred             cc
Confidence            44

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=96.85  E-value=0.00035  Score=62.29  Aligned_cols=60  Identities=17%  Similarity=-0.017  Sum_probs=29.7

Q ss_pred             ccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEE
Q 014227          277 CCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKI  340 (428)
Q Consensus       277 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~  340 (428)
                      ..+++++.|.+.........-....+++|+.|+|..+....    .+..-+.++|+|+.|+++.
T Consensus       218 ~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g----~iP~~l~~L~~L~~L~Ls~  277 (313)
T d1ogqa_         218 GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG----TLPQGLTQLKFLHSLNVSF  277 (313)
T ss_dssp             CTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEE----CCCGGGGGCTTCCEEECCS
T ss_pred             cccccccccccccccccccccccccccccccccCccCeecc----cCChHHhCCCCCCEEECcC
Confidence            45566666666555332211114455667777664332110    1223345667777777653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=96.52  E-value=2e-05  Score=65.81  Aligned_cols=37  Identities=16%  Similarity=0.204  Sum_probs=24.8

Q ss_pred             CCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccC
Q 014227          161 SGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSS  200 (428)
Q Consensus       161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~  200 (428)
                      ..+++|++|+|++..+.+=  . -+.++++|+.|+|.+|.
T Consensus        45 ~~L~~L~~L~Ls~n~I~~i--~-~l~~l~~L~~L~Ls~N~   81 (198)
T d1m9la_          45 STLKACKHLALSTNNIEKI--S-SLSGMENLRILSLGRNL   81 (198)
T ss_dssp             HHTTTCCEEECSEEEESCC--C-CHHHHTTCCEEECCEEE
T ss_pred             hcccccceeECcccCCCCc--c-cccCCccccChhhcccc
Confidence            3477888888888876541  1 15567777777777663

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=96.48  E-value=1.7e-05  Score=66.24  Aligned_cols=38  Identities=29%  Similarity=0.424  Sum_probs=22.8

Q ss_pred             CCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeeccc
Q 014227          160 LSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANS  199 (428)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~  199 (428)
                      +.++++|+.|+|.++.+.+  +..+...++.|+.|.+.++
T Consensus        66 l~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l~~N  103 (198)
T d1m9la_          66 LSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYN  103 (198)
T ss_dssp             HHHHTTCCEEECCEEEECS--CSSHHHHHHHCCEEECSEE
T ss_pred             ccCCccccChhhccccccc--ccccccccccccccccccc
Confidence            3456777777777777653  1122334556777777665

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=96.34  E-value=0.00036  Score=62.18  Aligned_cols=200  Identities=15%  Similarity=0.092  Sum_probs=100.8

Q ss_pred             CCCCCCCcccceEEeeeE-EeehHHHHHHHhcCCcccceeecccCCceee-EEecCCCCcceEEeeecCCcceEE---EE
Q 014227          157 GHGLSGIKSLRSLCLNAL-KVSGEVLEFFIHSCPHLEHLYVANSSELLSL-KVVGSSIPLKYLDIHYCYSMKEIE---IS  231 (428)
Q Consensus       157 p~~~~~~~~L~~L~L~~~-~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~---i~  231 (428)
                      |+.+..+++|++|+|.++ .+.+. +..-+.++++|+.|+|.++...+.. .....+.+|+.+++..+.....+.   -.
T Consensus        69 p~~l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~  147 (313)
T d1ogqa_          69 PSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS  147 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred             ChHHhcCccccccccccccccccc-cccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhcc
Confidence            344667999999999875 23221 2223788999999999988643321 111234678888777654211110   12


Q ss_pred             CCCcceEEEcceeee----eecCCCCCe-eEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCc
Q 014227          232 ASSLVSFRYSGKDIK----LHVGNVPQL-VDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKL  305 (428)
Q Consensus       232 ap~L~~L~~~~~~~~----~~~~~~p~L-~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L  305 (428)
                      .++|+.+.+.+....    -.+..++.+ +.+.+.........  ...+ ..+.. ..+.+........... ...+++|
T Consensus       148 l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~--~~~~-~~l~~-~~l~l~~~~~~~~~~~~~~~~~~l  223 (313)
T d1ogqa_         148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI--PPTF-ANLNL-AFVDLSRNMLEGDASVLFGSDKNT  223 (313)
T ss_dssp             CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC--CGGG-GGCCC-SEEECCSSEEEECCGGGCCTTSCC
T ss_pred             Ccccceeeccccccccccccccccccccccccccccccccccc--cccc-ccccc-cccccccccccccccccccccccc
Confidence            467777776655321    223334443 33433322221100  0111 22222 2344443322221111 5566788


Q ss_pred             cEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCcccccccCCcCc--cCCccEEEEee--eeeC
Q 014227          306 LHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGEKRHQIPVHL--HQHLKVVELHE--FRWL  373 (428)
Q Consensus       306 ~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~~~~~~p~~~--~~~L~~v~i~~--f~g~  373 (428)
                      +.|.+..+.... ..    .-+..+++|+.|++....       ....+|+.+  ..+|+.+.+.+  +.|.
T Consensus       224 ~~l~~~~~~l~~-~~----~~~~~~~~L~~L~Ls~N~-------l~g~iP~~l~~L~~L~~L~Ls~N~l~g~  283 (313)
T d1ogqa_         224 QKIHLAKNSLAF-DL----GKVGLSKNLNGLDLRNNR-------IYGTLPQGLTQLKFLHSLNVSFNNLCGE  283 (313)
T ss_dssp             SEEECCSSEECC-BG----GGCCCCTTCCEEECCSSC-------CEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred             cccccccccccc-cc----cccccccccccccCccCe-------ecccCChHHhCCCCCCEEECcCCccccc
Confidence            888774332111 11    123567888888886432       111144332  47788887764  4443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.00093  Score=62.25  Aligned_cols=37  Identities=11%  Similarity=0.202  Sum_probs=19.5

Q ss_pred             CcccceEEeeeEEeehHH---HHHHHhcCCcccceeeccc
Q 014227          163 IKSLRSLCLNALKVSGEV---LEFFIHSCPHLEHLYVANS  199 (428)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~L~~~  199 (428)
                      +++|++|.|.+|.+.+.+   +...+..||+|++|+|.++
T Consensus        26 l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N   65 (460)
T d1z7xw1          26 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN   65 (460)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC
T ss_pred             CCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCC
Confidence            455555666655555433   2333455555666655554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.0044  Score=52.37  Aligned_cols=84  Identities=14%  Similarity=0.167  Sum_probs=51.2

Q ss_pred             CCCeEEEEEeCCCCCCCccccchhhhhccCCCCCCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceee
Q 014227          126 KKVQNFELDFWPPSHINDYAFPLERYNFLKRGHGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSL  205 (428)
Q Consensus       126 ~~l~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l  205 (428)
                      +++++|++......     .+|..         .+.++++|++|+|.+..+.+..-...+.+++.++.|.+..+..+..+
T Consensus        29 ~~l~~L~Ls~n~i~-----~l~~~---------~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~   94 (242)
T d1xwdc1          29 RNAIELRFVLTKLR-----VIQKG---------AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI   94 (242)
T ss_dssp             SCCSEEEEESCCCC-----EECTT---------TTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEE
T ss_pred             CCCCEEECcCCcCC-----ccChh---------Hhhccchhhhhhhccccccceeecccccccccccccccccccccccc
Confidence            46777777544321     23322         24578999999998874322100112567888899888777655433


Q ss_pred             EEe--cCCCCcceEEeeecC
Q 014227          206 KVV--GSSIPLKYLDIHYCY  223 (428)
Q Consensus       206 ~i~--~~~~~L~~L~l~~c~  223 (428)
                      ...  ..+++|+.|.+.++.
T Consensus        95 ~~~~~~~l~~L~~l~l~~~~  114 (242)
T d1xwdc1          95 NPEAFQNLPNLQYLLISNTG  114 (242)
T ss_dssp             CTTSEECCTTCCEEEEESCC
T ss_pred             ccccccccccccccccchhh
Confidence            211  245889999888775

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.81  E-value=0.0019  Score=48.77  Aligned_cols=34  Identities=24%  Similarity=0.216  Sum_probs=15.2

Q ss_pred             ccCCcceeEEeeeeeeeecc-cC-CCCCCCccEEEE
Q 014227          277 CCFPQLKTLDLECCNEVFME-FG-HWELPKLLHLKL  310 (428)
Q Consensus       277 ~~~~~l~~L~l~~~~~~~~~-~~-~~~~~~L~~L~l  310 (428)
                      ..+++|+.|.++........ .. ...+++|+.|++
T Consensus        62 ~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l   97 (124)
T d1dcea3          62 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL   97 (124)
T ss_dssp             TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred             ccccccCeEECCCCccCCCCCchhhcCCCCCCEEEC
Confidence            44555555555544332211 11 344455555555

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.55  E-value=0.0039  Score=46.93  Aligned_cols=83  Identities=16%  Similarity=0.114  Sum_probs=49.2

Q ss_pred             cCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccEEEEEeecCCCCchhHHHHHH
Q 014227          249 VGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLHLKLTITEPNCESLLGLSFVL  327 (428)
Q Consensus       249 ~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~lL  327 (428)
                      +.++++|+++++.......+...   + ..+++|+.|.++......  ++ ...+++|++|.+..+......  .+ ..+
T Consensus        16 l~~l~~L~~L~ls~N~l~~lp~~---~-~~l~~L~~L~l~~N~i~~--l~~~~~l~~L~~L~l~~N~i~~~~--~~-~~l   86 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRALPPA---L-AALRCLEVLQASDNALEN--VDGVANLPRLQELLLCNNRLQQSA--AI-QPL   86 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCCCCGG---G-GGCTTCCEEECCSSCCCC--CGGGTTCSSCCEEECCSSCCCSSS--TT-GGG
T ss_pred             cccCCCCCEEECCCCccCcchhh---h-hhhhcccccccccccccc--cCccccccccCeEECCCCccCCCC--Cc-hhh
Confidence            44566677777766554433211   2 667888888887764432  23 667778888888554322211  11 234


Q ss_pred             HhCCCccEEEEEE
Q 014227          328 KACPFLQKLVIKI  340 (428)
Q Consensus       328 ~~~P~L~~L~i~~  340 (428)
                      ..+|+|+.|++.+
T Consensus        87 ~~~~~L~~L~l~~   99 (124)
T d1dcea3          87 VSCPRLVLLNLQG   99 (124)
T ss_dssp             GGCTTCCEEECTT
T ss_pred             cCCCCCCEEECCC
Confidence            6788888888754

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.31  E-value=0.0034  Score=51.25  Aligned_cols=80  Identities=15%  Similarity=0.073  Sum_probs=44.4

Q ss_pred             CcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCceee-EEecCCCCcceEEeeecCCcceEEEE----CCCcce
Q 014227          163 IKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSELLSL-KVVGSSIPLKYLDIHYCYSMKEIEIS----ASSLVS  237 (428)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~i~----ap~L~~  237 (428)
                      .+++++|+|++..+....-...+.+.++|+.|.|.++...... ......++|+.|++++.. +..+.-.    .++|+.
T Consensus        28 p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~-l~~l~~~~F~~l~~L~~  106 (192)
T d1w8aa_          28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKT  106 (192)
T ss_dssp             CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCE
T ss_pred             CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc-ccccCHHHHhCCCcccc
Confidence            4688889888887643221223567888888888776532211 111134667777776664 3333211    245555


Q ss_pred             EEEcce
Q 014227          238 FRYSGK  243 (428)
Q Consensus       238 L~~~~~  243 (428)
                      |++.+.
T Consensus       107 L~L~~N  112 (192)
T d1w8aa_         107 LNLYDN  112 (192)
T ss_dssp             EECCSS
T ss_pred             cccCCc
Confidence            555444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.16  E-value=0.0056  Score=48.72  Aligned_cols=63  Identities=14%  Similarity=-0.007  Sum_probs=26.5

Q ss_pred             ccCCcceeEEeeeeeeeecccC-----CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEE
Q 014227          277 CCFPQLKTLDLECCNEVFMEFG-----HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIK  339 (428)
Q Consensus       277 ~~~~~l~~L~l~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~  339 (428)
                      ...++|+.|.++++........     +...+.|++|.|..+..+......+...|+.++.|++|.+.
T Consensus        41 ~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~  108 (167)
T d1pgva_          41 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKAD  108 (167)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECC
T ss_pred             hhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECC
Confidence            4444555555544433221111     23344555555533322222233333444455555555554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.43  E-value=0.0072  Score=48.02  Aligned_cols=120  Identities=13%  Similarity=0.010  Sum_probs=70.7

Q ss_pred             ccCCcceeEEeeee-eeeecccC-----CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCccc-
Q 014227          277 CCFPQLKTLDLECC-NEVFMEFG-----HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGE-  349 (428)
Q Consensus       277 ~~~~~l~~L~l~~~-~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~-  349 (428)
                      ...++|+.|.|+.. ........     +...++|++|.|..+..+......+...|+.++.|+.|++..+.-.. .|- 
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~-~g~~   90 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP-ELLA   90 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH-HHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcch-HHHH
Confidence            66788888888653 22221111     55667899998854433333345677788899999999997653111 110 


Q ss_pred             -ccccCCcCccCCccEEEEeeee----eCCchHHHHHHHHhcccccccEEEecCch
Q 014227          350 -KRHQIPVHLHQHLKVVELHEFR----WLQIDPEIAFFIFRNAKVLEKMIIKPSSS  400 (428)
Q Consensus       350 -~~~~~p~~~~~~L~~v~i~~f~----g~~~e~~~~~~ll~~a~~L~~l~i~~~~~  400 (428)
                       .-.++.  ...+|+++.+.+-.    |.+...++++.+- .-++|+++.+.+...
T Consensus        91 ~l~~aL~--~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~-~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          91 RLLRSTL--VTQSIVEFKADNQRQSVLGNQVEMDMMMAIE-ENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHTT--TTCCCSEEECCCCSSCCCCHHHHHHHHHHHH-HCSSCCEEECCCCCH
T ss_pred             HHHHHHH--hCCcCCEEECCCCcCCCccHHHHHHHHHHHH-hCCCccEeeCcCCCc
Confidence             000111  13678999887643    2333455666554 447888888876543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.41  E-value=0.0027  Score=58.97  Aligned_cols=55  Identities=18%  Similarity=0.196  Sum_probs=26.5

Q ss_pred             CeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeeccc---C--CCCCCCccEEEE
Q 014227          254 QLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEF---G--HWELPKLLHLKL  310 (428)
Q Consensus       254 ~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~---~--~~~~~~L~~L~l  310 (428)
                      +|+++++.+....+ ..+.+++ ..++++++|.+..+.......   .  ...+++|++|+|
T Consensus         3 ~l~~ld~~~~~i~~-~~~~~l~-~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdL   62 (460)
T d1z7xw1           3 DIQSLDIQCEELSD-ARWAELL-PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL   62 (460)
T ss_dssp             EEEEEEEESCCCCH-HHHHHHH-HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEEC
T ss_pred             CCCEEEeeCCcCCh-HHHHHHH-HhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEEC
Confidence            45666665554443 1112333 555666666666553322111   1  344556666655

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.09  E-value=0.0085  Score=47.48  Aligned_cols=89  Identities=12%  Similarity=0.048  Sum_probs=41.6

Q ss_pred             CCCCeeEEEEeccCcch--hhHHHhhccccCCcceeEEeeeeeeeeccc-----CCCCCCCccEEEEEeecC--CCCchh
Q 014227          251 NVPQLVDVVIHGAPLFQ--VRYFIGLVVCCFPQLKTLDLECCNEVFMEF-----GHWELPKLLHLKLTITEP--NCESLL  321 (428)
Q Consensus       251 ~~p~L~~l~l~~~~~~~--~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~--~~~~~~  321 (428)
                      ..+.|+++++..+...+  ...+...+ ...+.++.|.++.+.......     .....++|+.++|.....  +.....
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l-~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~  122 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAEML-KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM  122 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHH-HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred             cCCccCeeeccCCcccHHHHHHHHHHH-hhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHH
Confidence            44555555555444332  22222333 555666666665543322111     144455666655532211  112223


Q ss_pred             HHHHHHHhCCCccEEEEEE
Q 014227          322 GLSFVLKACPFLQKLVIKI  340 (428)
Q Consensus       322 ~l~~lL~~~P~L~~L~i~~  340 (428)
                      .+...++.+++|++|.+++
T Consensus       123 ~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_         123 EIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             HHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHHHhCCCcCEEeCcC
Confidence            4555566666666666643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.74  E-value=0.02  Score=45.10  Aligned_cols=121  Identities=15%  Similarity=0.059  Sum_probs=65.3

Q ss_pred             ccCCcceeEEeeee-eeeeccc---C--CCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEecCCCCccc-
Q 014227          277 CCFPQLKTLDLECC-NEVFMEF---G--HWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIWNNNRTIGE-  349 (428)
Q Consensus       277 ~~~~~l~~L~l~~~-~~~~~~~---~--~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~~~~~~~~~-  349 (428)
                      ...++|++|++... ......+   .  ....++|++|+|..+..+......+...++..+.++.|++....... ++- 
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~-~g~~   92 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG-SGIL   92 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH-HHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccc-hhHH
Confidence            55566666666542 1211111   1  44567777777754433334455667777888888888876432110 110 


Q ss_pred             -ccccCCcCccCCccEEEEeeee---eCCchHHHHHHHHhcccccccEEEecCchh
Q 014227          350 -KRHQIPVHLHQHLKVVELHEFR---WLQIDPEIAFFIFRNAKVLEKMIIKPSSSR  401 (428)
Q Consensus       350 -~~~~~p~~~~~~L~~v~i~~f~---g~~~e~~~~~~ll~~a~~L~~l~i~~~~~~  401 (428)
                       .-....  ...+|+.+.+....   +.++..+++.. ++..+.|+++.+.....+
T Consensus        93 ~l~~~l~--~~~~L~~l~L~l~~n~i~~~~~~~La~~-L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_          93 ALVEALQ--SNTSLIELRIDNQSQPLGNNVEMEIANM-LEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             HHHHGGG--GCSSCCEEECCCCSSCCCHHHHHHHHHH-HHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHH--hCccccEEeeccCCCcCcHHHHHHHHHH-HHhCCCcCEEeCcCCCCc
Confidence             000011  23567777775322   22333444444 467789999998877544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.58  E-value=0.026  Score=45.58  Aligned_cols=78  Identities=17%  Similarity=0.175  Sum_probs=36.5

Q ss_pred             CCcceEEEcceeee----eecCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccC-CCCCCCccE
Q 014227          233 SSLVSFRYSGKDIK----LHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFG-HWELPKLLH  307 (428)
Q Consensus       233 p~L~~L~~~~~~~~----~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~L~~  307 (428)
                      ++|+.|.+.+....    -.+..+++|+++++.......+..  +.+ .++++|+.|+|+...+....-. +..+++|++
T Consensus        54 ~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~--~~F-~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~  130 (192)
T d1w8aa_          54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN--KMF-LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS  130 (192)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECS--SSS-TTCTTCCEEECCSSCCCEECTTSSTTCTTCCE
T ss_pred             ceEeeeeccccccccccccccccccccceeeeccccccccCH--HHH-hCCCcccccccCCccccccCHHHhcCCccccc
Confidence            45555555443221    123345556666555443332110  112 5666666666666543322211 445566666


Q ss_pred             EEEEee
Q 014227          308 LKLTIT  313 (428)
Q Consensus       308 L~l~~~  313 (428)
                      |.|..+
T Consensus       131 l~L~~N  136 (192)
T d1w8aa_         131 LNLASN  136 (192)
T ss_dssp             EECTTC
T ss_pred             cccccc
Confidence            666443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.52  E-value=0.046  Score=42.53  Aligned_cols=77  Identities=18%  Similarity=0.097  Sum_probs=41.4

Q ss_pred             cCCCCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecCCC-CchhHHHHHH
Q 014227          249 VGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNC-ESLLGLSFVL  327 (428)
Q Consensus       249 ~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~lL  327 (428)
                      +.++++|+.+++.......+..  ..+ ..+++|+.|+|+...............+|++|+|..+...+ .+..++...+
T Consensus        52 f~~l~~L~~L~Ls~N~l~~i~~--~~f-~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~C~C~~~~l~~~~  128 (156)
T d2ifga3          52 LRGLGELRNLTIVKSGLRFVAP--DAF-HFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWE  128 (156)
T ss_dssp             SCSCCCCSEEECCSSCCCEECT--TGG-GSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGGHHHHHHH
T ss_pred             hccccccCcceeeccccCCccc--ccc-cccccccceeccCCCCcccChhhhccccccccccCCCcccCCchHHHHHHHH
Confidence            3455666666665444333210  222 77888888888877554222112233468888886654332 3444555555


Q ss_pred             H
Q 014227          328 K  328 (428)
Q Consensus       328 ~  328 (428)
                      +
T Consensus       129 ~  129 (156)
T d2ifga3         129 E  129 (156)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=90.91  E-value=0.1  Score=45.86  Aligned_cols=136  Identities=17%  Similarity=0.140  Sum_probs=75.3

Q ss_pred             HHhCCCeEEEEEeCCCCCCCccccchhhhhccCCCCCCCCCcccceEEeeeEEeehHHHHHHHhcCCcccceeecccCCc
Q 014227          123 ATAKKVQNFELDFWPPSHINDYAFPLERYNFLKRGHGLSGIKSLRSLCLNALKVSGEVLEFFIHSCPHLEHLYVANSSEL  202 (428)
Q Consensus       123 ~~~~~l~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~  202 (428)
                      ....++++|++....     ...+|          .   ..++|++|+|++..+..  +   -....+|+.|.+.++...
T Consensus        35 c~~~~l~~LdLs~~~-----L~~lp----------~---~~~~L~~L~Ls~N~l~~--l---p~~~~~L~~L~l~~n~l~   91 (353)
T d1jl5a_          35 CLDRQAHELELNNLG-----LSSLP----------E---LPPHLESLVASCNSLTE--L---PELPQSLKSLLVDNNNLK   91 (353)
T ss_dssp             HHHHTCSEEECTTSC-----CSCCC----------S---CCTTCSEEECCSSCCSS--C---CCCCTTCCEEECCSSCCS
T ss_pred             HHHcCCCEEEeCCCC-----CCCCC----------C---CCCCCCEEECCCCCCcc--c---ccchhhhhhhhhhhcccc
Confidence            344588888774432     22344          2   25789999999876542  1   123468999998876532


Q ss_pred             eeeEEecCCCCcceEEeeecCCcceEE--EECCCcceEEEcceeeeeecCCCCCeeEEEEeccCcchhhHHHhhccccCC
Q 014227          203 LSLKVVGSSIPLKYLDIHYCYSMKEIE--ISASSLVSFRYSGKDIKLHVGNVPQLVDVVIHGAPLFQVRYFIGLVVCCFP  280 (428)
Q Consensus       203 ~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~L~~~~~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~l~~~~~~  280 (428)
                      . +  ..--+.|++|+++++. +..+.  ...++|+.|.+.+..........+.+..+.+........    ..+ ..++
T Consensus        92 ~-l--~~lp~~L~~L~L~~n~-l~~lp~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~----~~l-~~l~  162 (353)
T d1jl5a_          92 A-L--SDLPPLLEYLGVSNNQ-LEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEEL----PEL-QNLP  162 (353)
T ss_dssp             C-C--CSCCTTCCEEECCSSC-CSSCCCCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSC----CCC-TTCT
T ss_pred             h-h--hhhccccccccccccc-cccccchhhhccceeeccccccccccccccccccchhhcccccccc----ccc-cccc
Confidence            2 1  1111468899888775 33332  134678888776554322222334455554432222110    112 5677


Q ss_pred             cceeEEeeee
Q 014227          281 QLKTLDLECC  290 (428)
Q Consensus       281 ~l~~L~l~~~  290 (428)
                      .++.|.+...
T Consensus       163 ~l~~L~l~~n  172 (353)
T d1jl5a_         163 FLTAIYADNN  172 (353)
T ss_dssp             TCCEEECCSS
T ss_pred             cceecccccc
Confidence            7777877554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=90.19  E-value=0.2  Score=43.73  Aligned_cols=54  Identities=17%  Similarity=0.134  Sum_probs=31.6

Q ss_pred             ccCCcceeEEeeeeeeeecccCCCCCCCccEEEEEeecCCCCchhHHHHHHHhCCCccEEEEEEe
Q 014227          277 CCFPQLKTLDLECCNEVFMEFGHWELPKLLHLKLTITEPNCESLLGLSFVLKACPFLQKLVIKIW  341 (428)
Q Consensus       277 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~P~L~~L~i~~~  341 (428)
                      ..+++|++|+++++...  .+| ..+++|++|+|..+.-.  +..      +..++|++|+++..
T Consensus       281 ~~~~~L~~L~Ls~N~l~--~lp-~~~~~L~~L~L~~N~L~--~l~------~~~~~L~~L~L~~N  334 (353)
T d1jl5a_         281 DLPPSLEELNVSNNKLI--ELP-ALPPRLERLIASFNHLA--EVP------ELPQNLKQLHVEYN  334 (353)
T ss_dssp             CCCTTCCEEECCSSCCS--CCC-CCCTTCCEEECCSSCCS--CCC------CCCTTCCEEECCSS
T ss_pred             ccCCCCCEEECCCCccC--ccc-cccCCCCEEECCCCcCC--ccc------cccCCCCEEECcCC
Confidence            55678888888776432  222 34678888887433211  111      23567888887643

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.91  E-value=0.0085  Score=47.30  Aligned_cols=85  Identities=20%  Similarity=0.188  Sum_probs=47.4

Q ss_pred             CCCeeEEEEeccCcchhhHHHhhccccCCcceeEEeeeeeeeecc-cCCCCCCCccEEEEEeecCCC---CchhHHHHHH
Q 014227          252 VPQLVDVVIHGAPLFQVRYFIGLVVCCFPQLKTLDLECCNEVFME-FGHWELPKLLHLKLTITEPNC---ESLLGLSFVL  327 (428)
Q Consensus       252 ~p~L~~l~l~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~---~~~~~l~~lL  327 (428)
                      +|.|+.+++..+...+++.+.... ..+++|+.|++++....... ...-...+|++|.+..+....   ........++
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~-~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIV-QKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHH-HHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             CCCCCEeeCCCccccCCchhHHHH-hhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence            444555555444333222211223 67888899888877544322 112234468888885542221   1233566778


Q ss_pred             HhCCCccEEE
Q 014227          328 KACPFLQKLV  337 (428)
Q Consensus       328 ~~~P~L~~L~  337 (428)
                      +.+|+|+.|+
T Consensus       143 ~~~P~L~~LD  152 (162)
T d1koha1         143 ERFPKLLRLD  152 (162)
T ss_dssp             TTSTTCCEET
T ss_pred             HHCCCCCEEC
Confidence            8999999885

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.69  E-value=0.28  Score=37.76  Aligned_cols=40  Identities=20%  Similarity=0.270  Sum_probs=25.1

Q ss_pred             CCCCCCCcccceEEeeeEE----eehHHHHHHHhcCCcccceeecccC
Q 014227          157 GHGLSGIKSLRSLCLNALK----VSGEVLEFFIHSCPHLEHLYVANSS  200 (428)
Q Consensus       157 p~~~~~~~~L~~L~L~~~~----~~~~~l~~ll~~cp~Le~L~L~~~~  200 (428)
                      |..+.++++|++|+|.+..    ++..    .+.+.++|+.|.|.++.
T Consensus        24 p~~l~~l~~l~~L~l~~n~~l~~i~~~----~f~~l~~L~~L~Ls~N~   67 (156)
T d2ifga3          24 LHHLPGAENLTELYIENQQHLQHLELR----DLRGLGELRNLTIVKSG   67 (156)
T ss_dssp             TTTSCSCSCCSEEECCSCSSCCEECGG----GSCSCCCCSEEECCSSC
T ss_pred             cccccCccccCeeecCCCccccccCch----hhccccccCcceeeccc
Confidence            3445567888888886442    3222    25667788888877664