Citrus Sinensis ID: 014238

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------43
MAETEVSKKRKRPIVRLAVLLLSHSVLVSVICCTAGVFGLLLLPVLAKNTYISENALMPGSASSMLSNQEVSEANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRDYQVDAITLEFSLRISFDRLDRRNDFLLHGGRINGLLGGITLFHF
cccHHHHcccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccEEEEEEcccccccccccccccccccccccccccccccccEEEEEEEcccccccEEEEEEEEEEccccccccHHHHHHHHHHHHHHcccccccccEEEEEEcccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHEEEEEEEEEccccccccEEEEEEEccccccccHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHHHHHcccccccccccccHHcHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEEcccccccccccHHHHcccHHHHHHHccccccc
cccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccHHccccEEEHHccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccEEEEEEcccccccccccccccccccccEEccccccEccEEEEEEEEcccccccEEEEEEEEccccccccccHHHHHHHHHHHHHHHcccHHcccEEEEEccccccccHHHHHHHHHHccccccccccccHccccccccccccccccccccccHHHHEEEEEcccccccEcEEEEEEEccccccccHHHHHHHHHHHHccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEEEcccccccccccccEEEEcHHHHHHHccccEEcc
maetevskkrkrpIVRLAVLLLSHSVLVSVICCTAGVFGLLLLPVlakntyisenalmpgsassmlsnQEVSEANKLIKELNnlhsnplgatteSHGIIAKYMSNlgaqvnnhkfhpqlnqfhplhffsgpdsgvmqenstrslygintvgiiraprgdgkeAIVLVTpynavkggVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVadsqygeyapvaawlrdyhtpafsnldslntetchvgnnnfeskisygIRRSGTMAAALVLGVAygnenedtLGIYaeasngqmpnldlINIVHYLAVHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKtlnpdwklgISAADYVEGAATLASSLYHqalgvptgphgafrdyQVDAITLEFSLRISFDRLDRRNDFLLHGGRINGLLGGITLFHF
maetevskkrkrpivRLAVLLLSHSVLVSVICCTAGVFGLLLLPVLAKNTYISENALMPGSASSMLSNQEVSEANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGiiraprgdgkEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRDYQVDAITLEFSLRISFDRLDRRNDFLlhggringllggitlfHF
MAETEVSKKRKRPIvrlavlllshsvlvsvICCTAGVFGLLLLPVLAKNTYISENALMPGSASSMLSNQEVSEANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRDYQVDAITLEFSLRISFDRLDRRNDFLLHGGRINGLLGGITLFHF
************PIVRLAVLLLSHSVLVSVICCTAGVFGLLLLPVLAKNTYISE***************************************ESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSG**********TRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRDYQVDAITLEFSLRISFDRLDRRNDFLLHGGRINGLLGGITLFH*
*************IVRLAVLLLSHSVLVSVICCTAGVFGLLLLPVLAKNTYISENALMPGSASSMLSNQEVSEANKLIKELNN************HGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDS*VMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSN*************NNFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRDYQVDAITLEFSLR*********NDFLLHGGRINGLLGGITLFHF
**********KRPIVRLAVLLLSHSVLVSVICCTAGVFGLLLLPVLAKNTYISENALMPGSASSMLSNQEVSEANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRDYQVDAITLEFSLRISFDRLDRRNDFLLHGGRINGLLGGITLFHF
********KRKRPIVRLAVLLLSHSVLVSVICCTAGVFGLLLLPVLAKNTYISENALMPGSASSMLSNQEVSEANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRDYQVDAITLEFSLRISFDRLDRRNDFLLHGGRINGLLGGITLFHF
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAETEVSKKRKRPIVRLAVLLLSHSVLVSVICCTAGVFGLLLLPVLAKNTYISENALMPGSASSMLSNQEVSEANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRDYQVDAITLEFSLRISFDRLDRRNDFLLHGGRINGLLGGITLFHF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query428 2.2.26 [Sep-21-2011]
Q9WTK3 621 Glycosylphosphatidylinosi yes no 0.717 0.494 0.262 7e-15
O43292 621 Glycosylphosphatidylinosi yes no 0.719 0.495 0.262 9e-13
Q9US48 581 GPI transamidase componen yes no 0.719 0.530 0.226 1e-12
P39012 614 GPI transamidase componen yes no 0.558 0.389 0.254 6e-12
>sp|Q9WTK3|GPAA1_MOUSE Glycosylphosphatidylinositol anchor attachment 1 protein OS=Mus musculus GN=Gpaa1 PE=1 SV=3 Back     alignment and function desciption
 Score = 82.4 bits (202), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 162/389 (41%), Gaps = 82/389 (21%)

Query: 10  RKRPIVRLAVLLLSHSVLVSVICCTAGV--FGLLLLPVLAKNTYISENALMPGSASSMLS 67
           R+R + R+ + L   +  + V+   AG+  F  L  P L + TY+SENA+     S+M+ 
Sbjct: 9   RRRALARIVLRL---NTPLCVLSYVAGIAWFLALAFPPLTQRTYMSENAM----GSTMVE 61

Query: 68  NQEV--SEANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPL 125
            Q V    A    ++       P GA   +   + + M ++G +V    F  +L      
Sbjct: 62  EQFVGGDRARSFARDFAAHRKKP-GALPVAW--LERSMRSVGLEVYTQSFSRKL------ 112

Query: 126 HFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGI 185
                PD    + +    + G N  GI+RAPR    E++VL  P          + ++G+
Sbjct: 113 ---PFPD----ETHERYMVSGTNVYGILRAPRSASTESLVLTVPCGP---DATNSQAVGL 162

Query: 186 AYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGN 245
             ++ +      + AKDII+LV D    +     AWL  YH                +  
Sbjct: 163 LLALAAHFRGQIYWAKDIIFLVTDH---DLLGTEAWLEAYH---------------DINV 204

Query: 246 NNFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAV 305
              +S    G  R+G + AA+ L ++  ++   +L +  E  NGQ+PNLDL+N+      
Sbjct: 205 TGIQSSPLQG--RAGAIQAAVALELS--SDVVTSLDVTVEGLNGQLPNLDLLNLFQTFC- 259

Query: 306 HRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNP-DWKLGISAADYVEGAATLA 364
            + GL   ++                     GK    L P DW    S    ++G  TL 
Sbjct: 260 QKGGLLCTLQ---------------------GK----LQPQDWT---SLEGPLQGLQTLL 291

Query: 365 SSLYHQALGVPTGPHGAFRDYQVDAITLE 393
             +  QA G P GPHG F  Y V+A+TL 
Sbjct: 292 LMVLRQASGRPHGPHGLFLRYGVEALTLR 320
Essential for GPI-anchoring of precursor proteins but not for GPI synthesis. Acts before or during formation of the carbonyl intermediate.
Mus musculus (taxid: 10090)
>sp|O43292|GPAA1_HUMAN Glycosylphosphatidylinositol anchor attachment 1 protein OS=Homo sapiens GN=GPAA1 PE=1 SV=3 Back     alignment and function description
>sp|Q9US48|GAA1_SCHPO GPI transamidase component gaa1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gaa1 PE=3 SV=1 Back     alignment and function description
>sp|P39012|GAA1_YEAST GPI transamidase component GAA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GAA1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query428
356511698 705 PREDICTED: glycosylphosphatidylinositol 0.981 0.595 0.645 1e-157
449450074 714 PREDICTED: LOW QUALITY PROTEIN: glycosyl 0.971 0.582 0.632 1e-155
449483788 714 PREDICTED: glycosylphosphatidylinositol 0.971 0.582 0.632 1e-155
255560908 670 conserved hypothetical protein [Ricinus 0.967 0.617 0.672 1e-155
224060139 716 predicted protein [Populus trichocarpa] 0.964 0.576 0.669 1e-154
356573335 707 PREDICTED: glycosylphosphatidylinositol 0.983 0.595 0.632 1e-153
147783377 1027 hypothetical protein VITISV_026168 [Viti 0.971 0.405 0.654 1e-149
296087611 690 unnamed protein product [Vitis vinifera] 0.971 0.602 0.654 1e-149
359488887 701 PREDICTED: glycosylphosphatidylinositol 0.971 0.593 0.654 1e-149
357520045 701 GPI transamidase component gaa1 [Medicag 0.955 0.583 0.626 1e-147
>gi|356511698|ref|XP_003524560.1| PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein-like [Glycine max] Back     alignment and taxonomy information
 Score =  562 bits (1448), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 279/432 (64%), Positives = 338/432 (78%), Gaps = 12/432 (2%)

Query: 2   AETEVSKKRKRPIVRLAVLLLSHSVLVSVICCTAGVFGLLLLPVLAKNTYISENALMPGS 61
           +E   +K R RPIVRL + L+SHS +VSV+C  AGV  LLLLP+LAKNTYISENALMPGS
Sbjct: 4   SENNSAKPRVRPIVRLGIFLISHSNIVSVVCFIAGVVALLLLPILAKNTYISENALMPGS 63

Query: 62  ASSMLSNQEVSEANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQ 121
           A++MLS   VS+ANK IK+L +L        +    +IA YMS L A+V  HKF+PQ NQ
Sbjct: 64  ANNMLSTHHVSDANKFIKDLTDLEFR--SGASPIQKLIAHYMSALDAEVTFHKFYPQFNQ 121

Query: 122 FHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETL 181
           FHPLHFF+ P+SG++ EN+T S +GINTVGIIRAPRGDGKEAIVLVTPYN  K G+ E L
Sbjct: 122 FHPLHFFTSPNSGIISENATCSSFGINTVGIIRAPRGDGKEAIVLVTPYNPNKVGLGEAL 181

Query: 182 SLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETC 241
           SLGIAYSVFSLL+RVTWLAKDI+WLVADSQYGEY+ VAAWLR+YH PAF  +D +N+ETC
Sbjct: 182 SLGIAYSVFSLLSRVTWLAKDIVWLVADSQYGEYSGVAAWLREYHAPAFRRVDIVNSETC 241

Query: 242 HVGNN--------NFESKISYGIRRSGTMAAALVLGVA-YGNENEDTLGIYAEASNGQMP 292
           +  +          ++ K+  G RR+GTMAAALV+ VA  GN+ ED+L IYAEASNGQMP
Sbjct: 242 NESSTFNQLGQGLYWDGKLYGGFRRAGTMAAALVIKVAEQGNQYEDSLNIYAEASNGQMP 301

Query: 293 NLDLINIVHYLAVHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGIS 352
           NLDLINIV+YLAVH+QGLR+KV +   LL S+W+ +LG +FESLGK  ++LNP WK GI 
Sbjct: 302 NLDLINIVNYLAVHKQGLRIKVNKMWSLLGSRWLNTLGVIFESLGKFARSLNPQWKFGIP 361

Query: 353 AADYVEGAATLASSLYHQALGVPTGPHGAFRDYQVDAITLEFSLRISFDRLDRRNDFLLH 412
           A +YVEGAATLASSLY+Q LGVPTGPHGAFRDYQVDAITLE S ++S  ++ RRN+F+LH
Sbjct: 362 ATEYVEGAATLASSLYYQGLGVPTGPHGAFRDYQVDAITLEISPKVSLTKMIRRNEFILH 421

Query: 413 GGR-INGLLGGI 423
            GR I G++  I
Sbjct: 422 SGRLIEGVIRSI 433

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449450074|ref|XP_004142789.1| PREDICTED: LOW QUALITY PROTEIN: glycosylphosphatidylinositol anchor attachment 1 protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449483788|ref|XP_004156691.1| PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255560908|ref|XP_002521467.1| conserved hypothetical protein [Ricinus communis] gi|223539366|gb|EEF40957.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224060139|ref|XP_002300056.1| predicted protein [Populus trichocarpa] gi|222847314|gb|EEE84861.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356573335|ref|XP_003554817.1| PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein-like [Glycine max] Back     alignment and taxonomy information
>gi|147783377|emb|CAN59886.1| hypothetical protein VITISV_026168 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296087611|emb|CBI34867.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359488887|ref|XP_002274196.2| PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein [Vitis vinifera] Back     alignment and taxonomy information
>gi|357520045|ref|XP_003630311.1| GPI transamidase component gaa1 [Medicago truncatula] gi|355524333|gb|AET04787.1| GPI transamidase component gaa1 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query428
TAIR|locus:2182197 699 AT5G19130 "AT5G19130" [Arabido 0.934 0.572 0.602 7e-125
DICTYBASE|DDB_G0287287 752 DDB_G0287287 "Glycosylphosphat 0.294 0.167 0.348 1.6e-24
UNIPROTKB|G4N7S2 606 MGG_03523 "GPI transamidase co 0.231 0.163 0.364 2e-18
FB|FBgn0029818 674 CG3033 [Drosophila melanogaste 0.350 0.222 0.308 9.1e-17
ASPGD|ASPL0000014407 631 AN10439 [Emericella nidulans ( 0.418 0.283 0.31 2.3e-13
POMBASE|SPAC1002.11 581 gaa1 "GPI-anchor transamidase 0.390 0.287 0.241 2.5e-09
SGD|S000004078 614 GAA1 "Subunit of the GPI:prote 0.182 0.127 0.333 2.5e-09
UNIPROTKB|Q6PA87 615 gpaa1 "MGC68658 protein" [Xeno 0.411 0.286 0.233 3e-09
DICTYBASE|DDB_G0281323 715 DDB_G0281323 [Dictyostelium di 0.341 0.204 0.271 1.3e-07
CGD|CAL0000746 567 orf19.5693 [Candida albicans ( 0.210 0.158 0.306 1.6e-06
TAIR|locus:2182197 AT5G19130 "AT5G19130" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1227 (437.0 bits), Expect = 7.0e-125, P = 7.0e-125
 Identities = 247/410 (60%), Positives = 299/410 (72%)

Query:     8 KKRKRPIXXXXXXXXXXXXXXXXICCTAGVFGLLLLPVLAKNTYISENALMPGSASSMLS 67
             K + RPI                +   AGV  LLLLP+LAKNTYISENALMPGSA SMLS
Sbjct:    20 KIKPRPIVRLGIFLIAHSPVFSVVFSAAGVLALLLLPLLAKNTYISENALMPGSARSMLS 79

Query:    68 NQEVSEANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHF 127
             N++VS+ +KL+K++ N   N  G   E   +I KYMS++GA+V+  KFHP+ NQFHPLHF
Sbjct:    80 NRDVSDGSKLVKDIKNFRLNHEGQGVEVQKLIGKYMSDMGAEVSYQKFHPEGNQFHPLHF 139

Query:   128 FSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAY 187
             FSGPDS  + EN + + YG+N  GIIRAPRGDGKE+IVLVTPY+ + GG  E LSLGI  
Sbjct:   140 FSGPDSYTLLENVSCASYGVNVAGIIRAPRGDGKESIVLVTPYDFINGGDYEDLSLGIVS 199

Query:   188 SVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNN 247
             S+FSLL+RVTWL+KDIIWLVADS+YG+Y PVAAWL +YH+P+F   D L  +  +  +N 
Sbjct:   200 SLFSLLSRVTWLSKDIIWLVADSRYGDYRPVAAWLTEYHSPSFKVSDLLKCDEQNTADN- 258

Query:   248 FESKISYGIRRSGTMAAALVLGVAYGNEN-EDTLGIYAEASNGQMPNLDLINIVHYLAVH 306
                      RR+GTMAAALVL V   +E  EDTL IYAEASNGQMPNLDLIN+V+YLAVH
Sbjct:   259 --------FRRAGTMAAALVLKVDGRSEKFEDTLSIYAEASNGQMPNLDLINVVNYLAVH 310

Query:   307 RQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASS 366
             RQG  VKVE+   LL+S W+K  GE+FE++GK+   LNPDW  GI AADY+EG+ATLASS
Sbjct:   311 RQGFYVKVEKVVSLLSSSWLKIFGEIFEAVGKLAHMLNPDWNFGIPAADYLEGSATLASS 370

Query:   367 LYHQALGVPTGPHGAFRDYQVDAITLEFSLRISFDRLDRRNDFLLHGGRI 416
             LY QALG+PTGPHGAFRDYQVDAITL+ S R   D   R++DF L G R+
Sbjct:   371 LYSQALGIPTGPHGAFRDYQVDAITLKVSPRFPPDSKTRQHDFFLRGARL 420
GO:0003923 "GPI-anchor transamidase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0016021 "integral to membrane" evidence=IEA
GO:0042765 "GPI-anchor transamidase complex" evidence=IEA
GO:0005783 "endoplasmic reticulum" evidence=IDA
DICTYBASE|DDB_G0287287 DDB_G0287287 "Glycosylphosphatidylinositol anchor attachment 1 protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|G4N7S2 MGG_03523 "GPI transamidase component GAA1" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
FB|FBgn0029818 CG3033 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ASPGD|ASPL0000014407 AN10439 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
POMBASE|SPAC1002.11 gaa1 "GPI-anchor transamidase complex subunit Gaa1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
SGD|S000004078 GAA1 "Subunit of the GPI:protein transamidase complex" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|Q6PA87 gpaa1 "MGC68658 protein" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0281323 DDB_G0281323 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
CGD|CAL0000746 orf19.5693 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.I.2574.1
hypothetical protein (709 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.III.2151.1
hypothetical protein (667 aa)
     •  0.899
estExt_fgenesh4_pg.C_LG_III1551
SubName- Full=Putative uncharacterized protein; (230 aa)
     •  0.899
gw1.I.9112.1
hypothetical protein (356 aa)
     •  0.800
gw1.201.52.1
hypothetical protein (375 aa)
     •  0.800
grail3.0072000901
hypothetical protein (515 aa)
     •  0.800
estExt_fgenesh4_pm.C_LG_II1135
hypothetical protein (584 aa)
     •  0.800

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query428
pfam04114 498 pfam04114, Gaa1, Gaa1-like, GPI transamidase compo 5e-21
>gnl|CDD|217905 pfam04114, Gaa1, Gaa1-like, GPI transamidase component Back     alignment and domain information 
 Score = 94.9 bits (236), Expect = 5e-21
 Identities = 59/250 (23%), Positives = 100/250 (40%), Gaps = 54/250 (21%)

Query: 145 YGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDII 204
           YG N  GI+RAPRGD  E++VL  P+            + +  S+     R  + +KDII
Sbjct: 2   YGENLYGILRAPRGDSTESLVLAVPWFNSDSETNSA-GVALLLSLARFFRRWPYWSKDII 60

Query: 205 WLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGIRRSGTMAA 264
           +++ ++       + +WL  YH      +     +                  R+G++ A
Sbjct: 61  FVITEN---PRLGLRSWLEAYHDSTTPYISYTPLDL-----------------RAGSIQA 100

Query: 265 ALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHR--QGLRVKVEQFHWLLN 322
           A+VL ++   +  + + +  E  NGQ+PNLDL N+   +  H       + ++      N
Sbjct: 101 AVVLELSSTEDFSEYVEVSYEGLNGQLPNLDLFNLAQRITEHEGFMKYSLHLQPSDQHSN 160

Query: 323 SKWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAF 382
           S + + L    + L   +                             QA    TGPHG F
Sbjct: 161 SGFWQRL----KILLLGILD---------------------------QASSGVTGPHGLF 189

Query: 383 RDYQVDAITL 392
             Y++DA+TL
Sbjct: 190 SRYRIDALTL 199

GPI (glycosyl phosphatidyl inositol) transamidase is a multi-protein complex. Gpi16, Gpi8 and Gaa1 for a sub-complex of the GPI transamidase. GPI transamidase that adds glycosylphosphatidylinositols (GPIs) to newly synthesised proteins. Length = 498

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 428
KOG3566 617 consensus Glycosylphosphatidylinositol anchor atta 100.0
PF04114 504 Gaa1: Gaa1-like, GPI transamidase component ; Inte 100.0
PRK10199346 alkaline phosphatase isozyme conversion aminopepti 99.08
PF04389179 Peptidase_M28: Peptidase family M28; InterPro: IPR 98.39
KOG2194 834 consensus Aminopeptidases of the M20 family [Postt 98.09
PRK06133410 glutamate carboxypeptidase; Reviewed 97.54
PRK08596421 acetylornithine deacetylase; Validated 97.45
TIGR01879401 hydantase amidase, hydantoinase/carbamoylase famil 97.42
TIGR01892364 AcOrn-deacetyl acetylornithine deacetylase (ArgE). 97.33
TIGR01883361 PepT-like peptidase T-like protein. This model rep 97.33
PRK09133472 hypothetical protein; Provisional 97.28
PRK08588377 succinyl-diaminopimelate desuccinylase; Reviewed 97.2
PRK12890414 allantoate amidohydrolase; Reviewed 97.13
PRK05111383 acetylornithine deacetylase; Provisional 97.06
TIGR01882410 peptidase-T peptidase T. This model represents a t 97.06
PRK12893412 allantoate amidohydrolase; Reviewed 96.97
PRK09290413 allantoate amidohydrolase; Reviewed 96.96
PRK07906426 hypothetical protein; Provisional 96.95
PRK07522385 acetylornithine deacetylase; Provisional 96.92
PRK08652347 acetylornithine deacetylase; Provisional 96.89
TIGR01910375 DapE-ArgE acetylornithine deacetylase or succinyl- 96.87
PRK12892412 allantoate amidohydrolase; Reviewed 96.86
PRK07473376 carboxypeptidase; Provisional 96.79
PRK12891414 allantoate amidohydrolase; Reviewed 96.73
PF05450234 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastri 96.72
PRK06446436 hypothetical protein; Provisional 96.71
TIGR01893 477 aa-his-dipept aminoacyl-histidine dipeptidase. 96.67
PRK07907449 hypothetical protein; Provisional 96.66
PRK13381404 peptidase T; Provisional 96.65
PRK08262486 hypothetical protein; Provisional 96.64
PRK13983400 diaminopimelate aminotransferase; Provisional 96.54
PRK13013427 succinyl-diaminopimelate desuccinylase; Reviewed 96.52
COG2234435 Iap Predicted aminopeptidases [General function pr 96.51
TIGR03176406 AllC allantoate amidohydrolase. This enzyme cataly 96.49
PRK13009375 succinyl-diaminopimelate desuccinylase; Reviewed 96.47
PRK07338402 hypothetical protein; Provisional 96.45
PRK06837427 acetylornithine deacetylase; Provisional 96.41
PRK13590591 putative bifunctional OHCU decarboxylase/allantoat 96.41
PRK06915422 acetylornithine deacetylase; Validated 96.35
PRK04443348 acetyl-lysine deacetylase; Provisional 96.24
PRK05469408 peptidase T; Provisional 96.23
PRK09104464 hypothetical protein; Validated 96.12
PRK13799591 unknown domain/N-carbamoyl-L-amino acid hydrolase 96.06
PRK08201456 hypothetical protein; Provisional 96.0
TIGR01902336 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine d 95.99
PRK07205444 hypothetical protein; Provisional 95.95
PRK00466346 acetyl-lysine deacetylase; Validated 95.91
PRK13004399 peptidase; Reviewed 95.88
COG0624409 ArgE Acetylornithine deacetylase/Succinyl-diaminop 95.79
PRK08651394 succinyl-diaminopimelate desuccinylase; Reviewed 95.76
PRK13007352 succinyl-diaminopimelate desuccinylase; Reviewed 95.68
TIGR01880400 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase 95.65
PLN02693437 IAA-amino acid hydrolase 95.52
KOG2195702 consensus Transferrin receptor and related protein 95.49
PRK15026 485 aminoacyl-histidine dipeptidase; Provisional 95.22
PRK07318466 dipeptidase PepV; Reviewed 95.13
TIGR01891363 amidohydrolases amidohydrolase. This model represe 95.04
TIGR03526395 selenium_YgeY putative selenium metabolism hydrola 95.03
TIGR01246370 dapE_proteo succinyl-diaminopimelate desuccinylase 94.7
PRK08554438 peptidase; Reviewed 94.56
KOG2526555 consensus Predicted aminopeptidases - M20/M25/M40 94.43
PRK07079469 hypothetical protein; Provisional 94.12
PLN02280478 IAA-amino acid hydrolase 93.84
TIGR03320395 ygeY M20/DapE family protein YgeY. Members of this 93.78
TIGR01886466 dipeptidase dipeptidase PepV. This model represent 93.16
TIGR01887447 dipeptidaselike dipeptidase, putative. This model 92.3
PF09940386 DUF2172: Domain of unknown function (DUF2172); Int 91.77
PRK06156 520 hypothetical protein; Provisional 91.61
TIGR01900373 dapE-gram_pos succinyl-diaminopimelate desuccinyla 91.52
KOG3946338 consensus Glutaminyl cyclase [Posttranslational mo 90.63
COG1363355 FrvX Cellulase M and related proteins [Carbohydrat 89.75
COG4187 553 RocB Arginine degradation protein (predicted deacy 87.92
PRK08737364 acetylornithine deacetylase; Provisional 85.39
PF01546189 Peptidase_M20: Peptidase family M20/M25/M40 This f 85.34
PF05343292 Peptidase_M42: M42 glutamyl aminopeptidase; InterP 83.63
KOG2275420 consensus Aminoacylase ACY1 and related metalloexo 80.36
>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=2.4e-74  Score=594.75  Aligned_cols=337  Identities=36%  Similarity=0.553  Sum_probs=281.7

Q ss_pred             ccccchHHHHHHHHHHhchhhHHHHHHHHHHHHHhcc--cCCcccccccccCCCcceeeecchhhHHHHHHHHHHHHhhh
Q 014238            8 KKRKRPIVRLAVLLLSHSVLVSVICCTAGVFGLLLLP--VLAKNTYISENALMPGSASSMLSNQEVSEANKLIKELNNLH   85 (428)
Q Consensus         8 ~~~~r~~~~l~~~l~~~~~~ls~ll~l~Gi~~ll~lP--~~~r~TYisENALlPg~v~~~f~~~~~~~a~~y~~~l~~~~   85 (428)
                      .+|+|+++++.   +|+...++++++++|+.|+++|+  .+.++|||||||||||||++||+..+++++++|.+++++++
T Consensus         7 ~~~~~~~~~l~---~r~ia~lpv~s~v~g~awf~aL~~~pl~~rtyiSEnAlmpg~v~s~~~~~~~~~~~~~~~~~~~~r   83 (617)
T KOG3566|consen    7 PIRQIPLVRLL---IRHIAHLPVFSYVAGLAWFFALALLPLLKRTYISENALMPGQVYSYFRNRDVSDASKLLKDIKNFR   83 (617)
T ss_pred             chhhHHhHHHH---HhhcccchHHHHHHHHHHHHHHhhchhcccceeeccccCccchhhhhhccchhhhHHHHHHHHHHH
Confidence            47889999985   66666677777888888887764  45799999999999999999999999999999999999998


Q ss_pred             cCCCCCchhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcCCCCCCceEEE
Q 014238           86 SNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIV  165 (428)
Q Consensus        86 ~~~~~~~~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrApRgdgtEaiV  165 (428)
                      . ....  ....|+...|++.|+|+++|+|+..  +|                   ..+.|+|||||+||||+||||+||
T Consensus        84 ~-~~s~--~~~~~~~~~~q~FGl~t~~~n~~~~--P~-------------------e~y~G~NvyGilRAPRgdgtEsiv  139 (617)
T KOG3566|consen   84 K-HESQ--VPNAWAEVSMQEFGLETHTQNYSNG--PF-------------------EEYSGENVYGILRAPRGDGTESIV  139 (617)
T ss_pred             H-hhcc--cchhHHHHHHHHhCccccccCccCC--ch-------------------hhcCCceEEEEEecCCCCCcceEE
Confidence            7 3322  6788999999999999999998642  11                   135799999999999999999999


Q ss_pred             EEEeeccCCCCCcchhhHHHHHHHHHHHhcCCCCccceEEEeeCCCCCCchhHHHHHHHhcCCCCCCCCCCcccccccCC
Q 014238          166 LVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGN  245 (428)
Q Consensus       166 L~ap~~~~~~~~~~~~gval~LaLa~yl~~~~~wAKDIIfv~~D~~~~~~~G~~AWL~aYh~~~~~~~~~~~~~~~~~~~  245 (428)
                      |+|||+..++. | ..++|+++||++|++||+||||||||||+|+   +..|++|||++||++..  ...    .+..+ 
T Consensus       140 l~vP~~~~~~~-~-~~~v~l~lsla~~f~r~~yWsKDII~v~~d~---~~~g~~AwLeaYhd~~s--~~~----~~~ep-  207 (617)
T KOG3566|consen  140 LVVPYGRSSGS-N-SASVALLLSLADYFSRWVYWSKDIIFVFTDG---PALGLDAWLEAYHDILS--LTG----ISVEP-  207 (617)
T ss_pred             EEEecccCCCc-c-hhHHHHHHHHHHHhcCCeeecccEEEEEeCC---ccccHHHHHHHhhcccc--ccc----ccccc-
Confidence            99999988776 4 6799999999999999999999999999997   77999999999999521  111    11111 


Q ss_pred             CCccccccccccchhhheeeeEEeecCCCCCcceEEEEeecCCCCCCChhHHHHHHHHHhhccCceeeeeehhccchhhh
Q 014238          246 NNFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNSKW  325 (428)
Q Consensus       246 ~~~~~~~~~~~~raG~IqaAl~Le~~~~~~~~~~l~I~~eG~NGqLPNLDLiN~v~~la~~~~gi~v~l~~~~~~~~~~w  325 (428)
                             .....|+|+++||+++|+++.  .+++|+|.+||+|||||||||+|+...+++ ++|+.|++++..       
T Consensus       208 -------~~i~~ragal~aal~l~~se~--~~d~v~i~~eglNGqlPNLDlf~i~~~~~~-k~g~~v~l~g~~-------  270 (617)
T KOG3566|consen  208 -------DEIQARAGALAAALVLEVSEK--FQDIVEIQYEGLNGQLPNLDLFNITQIFMQ-KEGLLVTLQGKL-------  270 (617)
T ss_pred             -------ccccccccceeeEEEEEeccc--cceeEEEEecccCCCCCcchHHHHHHHHHH-hcCceEEEecCc-------
Confidence                   234479999999999999965  689999999999999999999987766665 689999998732       


Q ss_pred             hhhhhhHHHhhhhhhhccCCCcccCCChhhHHHHHHHHHHHHHHhhccCcCCccccccCCcccEEEEEEEcCCCcccccc
Q 014238          326 VKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRDYQVDAITLEFSLRISFDRLDR  405 (428)
Q Consensus       326 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~Y~~~l~~ll~~~~~qa~G~ptG~Hg~F~~y~IdAiTL~~~~~~~~~~~~~  405 (428)
                                       ..++|..   .++|.+++++|+.+++.||+|.|||+||+|++|||||+|++..++++.+  .+
T Consensus       271 -----------------~~~d~~s---~~~~~s~l~tl~~~l~~QA~g~ptg~Hglf~~Y~vdaLTlrr~~~~s~~--~~  328 (617)
T KOG3566|consen  271 -----------------LPLDWHS---NSMYLSGLKTLLLMLLTQASGSPTGIHGLFLRYRVDALTLRRILSDSFK--QY  328 (617)
T ss_pred             -----------------CCccccc---CchhhhhHHHHHHHHHHHHhcCCCCccccccccccceEEeccccccccc--cc
Confidence                             1245543   3489999999999999999999999999999999999999877666655  55


Q ss_pred             cchhhhhchhh-hhcccce
Q 014238          406 RNDFLLHGGRI-NGLLGGI  423 (428)
Q Consensus       406 ~~~~~~~~~rl-~~~~~~~  423 (428)
                      +.| +.++||. ||.+|++
T Consensus       329 ~~d-~~~~gkaiEg~fRsL  346 (617)
T KOG3566|consen  329 GYD-LVRFGKAIEGMFRSL  346 (617)
T ss_pred             chH-HHHHHHHHHHHHHHH
Confidence            555 5599999 7999986

>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins Back     alignment and domain information
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional Back     alignment and domain information
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only] Back     alignment and domain information
>PRK06133 glutamate carboxypeptidase; Reviewed Back     alignment and domain information
>PRK08596 acetylornithine deacetylase; Validated Back     alignment and domain information
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family Back     alignment and domain information
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE) Back     alignment and domain information
>TIGR01883 PepT-like peptidase T-like protein Back     alignment and domain information
>PRK09133 hypothetical protein; Provisional Back     alignment and domain information
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>PRK12890 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>PRK05111 acetylornithine deacetylase; Provisional Back     alignment and domain information
>TIGR01882 peptidase-T peptidase T Back     alignment and domain information
>PRK12893 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>PRK09290 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>PRK07906 hypothetical protein; Provisional Back     alignment and domain information
>PRK07522 acetylornithine deacetylase; Provisional Back     alignment and domain information
>PRK08652 acetylornithine deacetylase; Provisional Back     alignment and domain information
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase Back     alignment and domain information
>PRK12892 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>PRK07473 carboxypeptidase; Provisional Back     alignment and domain information
>PRK12891 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch Back     alignment and domain information
>PRK06446 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase Back     alignment and domain information
>PRK07907 hypothetical protein; Provisional Back     alignment and domain information
>PRK13381 peptidase T; Provisional Back     alignment and domain information
>PRK08262 hypothetical protein; Provisional Back     alignment and domain information
>PRK13983 diaminopimelate aminotransferase; Provisional Back     alignment and domain information
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>COG2234 Iap Predicted aminopeptidases [General function prediction only] Back     alignment and domain information
>TIGR03176 AllC allantoate amidohydrolase Back     alignment and domain information
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>PRK07338 hypothetical protein; Provisional Back     alignment and domain information
>PRK06837 acetylornithine deacetylase; Provisional Back     alignment and domain information
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional Back     alignment and domain information
>PRK06915 acetylornithine deacetylase; Validated Back     alignment and domain information
>PRK04443 acetyl-lysine deacetylase; Provisional Back     alignment and domain information
>PRK05469 peptidase T; Provisional Back     alignment and domain information
>PRK09104 hypothetical protein; Validated Back     alignment and domain information
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional Back     alignment and domain information
>PRK08201 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase Back     alignment and domain information
>PRK07205 hypothetical protein; Provisional Back     alignment and domain information
>PRK00466 acetyl-lysine deacetylase; Validated Back     alignment and domain information
>PRK13004 peptidase; Reviewed Back     alignment and domain information
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase Back     alignment and domain information
>PLN02693 IAA-amino acid hydrolase Back     alignment and domain information
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only] Back     alignment and domain information
>PRK15026 aminoacyl-histidine dipeptidase; Provisional Back     alignment and domain information
>PRK07318 dipeptidase PepV; Reviewed Back     alignment and domain information
>TIGR01891 amidohydrolases amidohydrolase Back     alignment and domain information
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase Back     alignment and domain information
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade Back     alignment and domain information
>PRK08554 peptidase; Reviewed Back     alignment and domain information
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism] Back     alignment and domain information
>PRK07079 hypothetical protein; Provisional Back     alignment and domain information
>PLN02280 IAA-amino acid hydrolase Back     alignment and domain information
>TIGR03320 ygeY M20/DapE family protein YgeY Back     alignment and domain information
>TIGR01886 dipeptidase dipeptidase PepV Back     alignment and domain information
>TIGR01887 dipeptidaselike dipeptidase, putative Back     alignment and domain information
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis Back     alignment and domain information
>PRK06156 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase Back     alignment and domain information
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism] Back     alignment and domain information
>PRK08737 acetylornithine deacetylase; Provisional Back     alignment and domain information
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query428
4f9u_A312 CG32412; alpha/beta hydrolase, PGlu formation, PE, 99.46
4fuu_A309 Leucine aminopeptidase; phosphorylase/hydrolase li 99.29
4fai_A330 CG5976, isoform B; alpha/beta hydrolase, PGlu form 99.28
3tc8_A309 Leucine aminopeptidase; phosphorylase/hydrolase-li 99.2
3gux_A314 Putative Zn-dependent exopeptidase; aminopeptidase 99.14
1tkj_A284 Aminopeptidase, SGAP; double-zinc metalloproteinas 99.01
1rtq_A299 Bacterial leucyl aminopeptidase; bimetallic, zinc, 98.89
3pb6_X330 Glutaminyl-peptide cyclotransferase-like protein; 98.83
2afw_A329 Glutaminyl-peptide cyclotransferase; alpha-beta pr 98.7
3iib_A444 Peptidase M28; YP_926796.1, structural genomics, J 98.29
4h2k_A269 Succinyl-diaminopimelate desuccinylase; DAPE, MCSG 97.96
3t68_A268 Succinyl-diaminopimelate desuccinylase; DAPE, csgi 97.93
2ek8_A421 Aminopeptidase; metalloproteinase, hydrolase; 1.80 97.92
1q7l_A198 Aminoacylase-1; catalysis, enzyme dimerization, si 97.77
3n5f_A408 L-carbamoylase, N-carbamoyl-L-amino acid hydrolase 97.74
3kas_A640 Transferrin receptor protein 1; transferrin recept 97.73
3k9t_A435 Putative peptidase; structural genomics, joint cen 97.71
3pfo_A433 Putative acetylornithine deacetylase; metal bindin 97.55
3fed_A 707 Glutamate carboxypeptidase III; metallopeptidase, 97.53
2pok_A481 Peptidase, M20/M25/M40 family; M20 family peptidas 97.5
1cg2_A393 Carboxypeptidase G2; metallocarboxypeptidase, hydr 97.5
3ct9_A356 Acetylornithine deacetylase; NP_812461.1, A putati 97.44
3gb0_A373 Peptidase T; NP_980509.1, aminopeptidase PEPT, pep 97.4
3rza_A396 Tripeptidase; phosphorylase/hydrolase-like, struct 97.39
1ysj_A404 Protein YXEP; M20 family peptidase, dinuclear meta 97.34
3tx8_A369 Succinyl-diaminopimelate desuccinylase; peptidase, 97.32
1z2l_A423 Allantoate amidohydrolase; ALLC, purine cataboli a 97.21
1vhe_A373 Aminopeptidase/glucanase homolog; structural genom 97.19
2zog_A479 Cytosolic non-specific dipeptidase; metallopeptida 97.18
1xmb_A418 IAA-amino acid hydrolase homolog 2; structural gen 97.06
3dlj_A485 Beta-Ala-His dipeptidase; CNDP1, carnosine dipepti 97.01
1ylo_A348 Hypothetical protein SF2450; structural genomics, 96.97
3ife_A434 Peptidase T; metallopeptidase, aminopeptidase, hyd 96.91
2v8h_A474 Beta-alanine synthase; amidohydrolase, alpha and b 96.89
3isz_A377 Succinyl-diaminopimelate desuccinylase; DAPE, Zn-b 96.86
1vgy_A393 Succinyl-diaminopimelate desuccinylase; structural 96.86
2rb7_A364 Peptidase, M20/M25/M40 family; YP_387682.1, CO-cat 96.85
1vho_A346 Endoglucanase; structural genomics, unknown functi 96.82
3mru_A 490 Aminoacyl-histidine dipeptidase; metalloprotease, 96.8
3khx_A 492 Putative dipeptidase sacol1801; DAPE, metallopepti 96.79
1lfw_A470 PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bac 96.69
3pfe_A472 Succinyl-diaminopimelate desuccinylase; metal bind 96.6
1y0y_A353 FRV operon protein FRVX; aminopeptidase, PDZ, hydr 96.57
1fno_A417 Peptidase T; metallo peptidase, protease, hydrolas 96.43
2qyv_A 487 XAA-His dipeptidase; YP_718209.1, structural genom 96.41
3ram_A394 HMRA protein; two-domain, catalytic (alpha-beta-al 96.4
2fvg_A340 Endoglucanase; TM1049, structural genomics, joint 96.39
2wyr_A332 Cobalt-activated peptidase TET1; hydrolase, large 96.23
2gre_A349 Deblocking aminopeptidase; structural genomi prote 96.19
3cpx_A321 Aminopeptidase, M42 family; YP_676701.1, putative 96.17
3io1_A445 Aminobenzoyl-glutamate utilization protein; peptid 96.03
2f7v_A369 Aectylcitrulline deacetylase; alpha/beta, hydrolas 95.53
3kl9_A355 PEPA, glutamyl aminopeptidase; tetrahedral aminope 94.53
2wzn_A354 TET3, 354AA long hypothetical operon protein FRV; 90.0
>4f9u_A CG32412; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, glycosylation, transferase, HY; HET: PBD NAG BMA MAN; 1.80A {Drosophila melanogaster} PDB: 4f9v_A* Back     alignment and structure
Probab=99.46  E-value=7.2e-13  Score=130.80  Aligned_cols=114  Identities=13%  Similarity=0.157  Sum_probs=93.2

Q ss_pred             hhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccccceEEEEEcCCCCCCceEEEEEEeecc
Q 014238           93 TESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNA  172 (428)
Q Consensus        93 ~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~G~NvygilrApRgdgtEaiVL~ap~~~  172 (428)
                      ..+++||.++|+++|++++.|+|+.+..                 .  .....+.||+|.+++   ...|.|||.+|||+
T Consensus        32 ~~~~~~i~~~l~~~g~~v~~~~f~~~~~-----------------~--~~~~~~~Nii~~~~~---~~~~~vvl~aHyDs   89 (312)
T 4f9u_A           32 QQVREYLVQSLNGLGFQTEVDEFKQRVP-----------------V--FGELTFANVVGTINP---QAQNFLALACHYDS   89 (312)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEEEEEET-----------------T--TEEEEEEEEEEEEST---TSSEEEEEEEECCC
T ss_pred             HHHHHHHHHHHHHCCCeEEEEeEEEecC-----------------C--CCceeEEEEEEEECC---CCCceEEEEEEEec
Confidence            4679999999999999999999875410                 0  013567899999986   46799999999998


Q ss_pred             C--------CCCCcchhhHHHHHHHHHHHhcC------CCCccceEEEeeCCCCCC--------chhHHHHHHHhcCC
Q 014238          173 V--------KGGVRETLSLGIAYSVFSLLTRV------TWLAKDIIWLVADSQYGE--------YAPVAAWLRDYHTP  228 (428)
Q Consensus       173 ~--------~~~~~~~~gval~LaLa~yl~~~------~~wAKDIIfv~~D~~~~~--------~~G~~AWL~aYh~~  228 (428)
                      .        .|+.++++|+|++|.+||.|+..      .-..++|+||+.|+|+.+        +.|.++|++.|...
T Consensus        90 ~~~~~~~~~~GA~DnaSGvA~lLElAR~l~~~~~~~~~~~p~~tI~fv~fdaEE~G~~~~~~~~L~GS~~~a~~~~~~  167 (312)
T 4f9u_A           90 KYFPNDPGFVGATDSAVPCAILLNTAKTLGAYLQKEFRNRSDVGLMLIFFDGEEAFKEWTDADSVYGSKHLAAKLASK  167 (312)
T ss_dssp             CCCTTCTTCCCTTTTHHHHHHHHHHHHHTHHHHTTGGGSCSSEEEEEEEESCCSCSSSCSSSSSCHHHHHHHHHHHHC
T ss_pred             CCCCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhhccCCCCceEEEEEecCccccccCCccccccChHHHHHHHHhh
Confidence            5        37888899999999999999642      235689999999999855        78999999998653
>4fuu_A Leucine aminopeptidase; phosphorylase/hydrolase like fold, peptidase family M28, STR genomics, joint center for structural genomics; 1.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>4fai_A CG5976, isoform B; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, transferase, hydrolase; HET: PBD; 1.65A {Drosophila melanogaster} PDB: 4fbe_A* Back     alignment and structure
>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis} Back     alignment and structure
>3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482} Back     alignment and structure
>1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A Back     alignment and structure
>1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ... Back     alignment and structure
>3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta protein, alpha/beta-mixed fold, glutaminyl cyclas membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X* 3pb8_X* 3pb9_X* Back     alignment and structure
>2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein, metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP: c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A* 2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A 2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ... Back     alignment and structure
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} Back     alignment and structure
>4h2k_A Succinyl-diaminopimelate desuccinylase; DAPE, MCSG, PSI-biology, structural genomics, midwest center structural genomics, hydrolase; 1.84A {Haemophilus influenzae} Back     alignment and structure
>3t68_A Succinyl-diaminopimelate desuccinylase; DAPE, csgid, metalloenzyme, structural genomics; 1.65A {Vibrio cholerae o1 biovar el tor} PDB: 3t6m_A Back     alignment and structure
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* Back     alignment and structure
>1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4 Back     alignment and structure
>3n5f_A L-carbamoylase, N-carbamoyl-L-amino acid hydrolase; hinge domain, M20 peptidase family, evolution, residue, dimerization domain; 2.75A {Bacillus stearothermophilus} Back     alignment and structure
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A Back     alignment and structure
>3k9t_A Putative peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, aminop hydrolase; 2.37A {Clostridium acetobutylicum} Back     alignment and structure
>3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A family, amino-acid biosynthesis, metallopeptidase; 1.90A {Rhodopseudomonas palustris} Back     alignment and structure
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... Back     alignment and structure
>2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo protein, MCSG, structural GENO PSI-2, protein structure initiative; HET: BGC; 1.90A {Streptococcus pneumoniae} Back     alignment and structure
>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1 Back     alignment and structure
>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20 structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family M20/M25/M structural genomics, joint center for structural genomics; 2.04A {Bacillus cereus atcc 10987} Back     alignment and structure
>3rza_A Tripeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: CIT PG4 PGE; 2.10A {Staphylococcus aureus subsp} Back     alignment and structure
>1ysj_A Protein YXEP; M20 family peptidase, dinuclear metal binding, structural GE PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: c.56.5.4 d.58.19.1 Back     alignment and structure
>3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural genomics, joint center for structural JCSG; 2.97A {Corynebacterium glutamicum} Back     alignment and structure
>1z2l_A Allantoate amidohydrolase; ALLC, purine cataboli allantoin utilization, structural genomics, PSI, Pro structure initiative; HET: 1AL; 2.25A {Escherichia coli} SCOP: c.56.5.4 d.58.19.1 PDB: 2imo_A Back     alignment and structure
>1vhe_A Aminopeptidase/glucanase homolog; structural genomics, unknown function; HET: MSE; 1.90A {Bacillus subtilis} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A* Back     alignment and structure
>1xmb_A IAA-amino acid hydrolase homolog 2; structural genomics, protein structure initiative, CESG AT5G56660, ILL2, indole-3-acetic acid, auxin; 2.00A {Arabidopsis thaliana} SCOP: c.56.5.4 d.58.19.1 PDB: 2q43_A Back     alignment and structure
>3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1, structural genomics, structu genomics consortium, SGC, metallopeptidase M20 family; 2.26A {Homo sapiens} Back     alignment and structure
>1ylo_A Hypothetical protein SF2450; structural genomics, MCSG, PSI, structure initiative; 2.15A {Shigella flexneri 2a str} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>3ife_A Peptidase T; metallopeptidase, aminopeptidase, hydro metal-binding, metalloprotease, protease; HET: SUC; 1.55A {Bacillus anthracis} Back     alignment and structure
>2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein, DI-zinc center, COMP N-carbamyl-beta-alanine, hydrolase; HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A* 2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A Back     alignment and structure
>3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2, protein struc initiative; 2.00A {Haemophilus influenzae} PDB: 3ic1_A Back     alignment and structure
>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics, unknown function; HET: MSE; 1.90A {Neisseria meningitidis} SCOP: c.56.5.4 d.58.19.1 Back     alignment and structure
>2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic metallopeptidase, peptidase family M20/M25/M40, structural genomics; HET: MSE PGE PG4; 1.60A {Desulfovibrio desulfuricans subsp} Back     alignment and structure
>1vho_A Endoglucanase; structural genomics, unknown function; HET: MSE; 1.86A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>3mru_A Aminoacyl-histidine dipeptidase; metalloprotease, homodimer, hydrolase; 3.00A {Vibrio alginolyticus} Back     alignment and structure
>3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase, metal-bindin metalloprotease, protease; 2.30A {Staphylococcus aureus} PDB: 3ki9_A 3khz_A Back     alignment and structure
>1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP: c.56.5.4 d.58.19.1 Back     alignment and structure
>3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20 familiy, phosphorylase/hydrolase-L structural genomics; HET: MSE; 1.50A {Legionella pneumophila subsp} Back     alignment and structure
>1y0y_A FRV operon protein FRVX; aminopeptidase, PDZ, hydrolase; HET: ATI; 1.60A {Pyrococcus horikoshii} SCOP: b.49.3.1 c.56.5.4 PDB: 1y0r_A* 1xfo_A Back     alignment and structure
>1fno_A Peptidase T; metallo peptidase, protease, hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.56.5.4 d.58.19.1 PDB: 1vix_A Back     alignment and structure
>2qyv_A XAA-His dipeptidase; YP_718209.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, hydrolase; 2.11A {Haemophilus somnus 129PT} Back     alignment and structure
>3ram_A HMRA protein; two-domain, catalytic (alpha-beta-alpha) motif, tetramerisat (alpha,beta,BETA,alpha), endoprotease, hydrolase; 2.70A {Staphylococcus aureus} Back     alignment and structure
>2fvg_A Endoglucanase; TM1049, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; 2.01A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>2wyr_A Cobalt-activated peptidase TET1; hydrolase, large SELF-assembled dodecamer, hyperthermophilic; 2.24A {Pyrococcus horikoshii} PDB: 2cf4_A Back     alignment and structure
>2gre_A Deblocking aminopeptidase; structural genomi protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; 2.65A {Bacillus cereus} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>3cpx_A Aminopeptidase, M42 family; YP_676701.1, putative M42 glutamyl aminopeptidase, structura genomics; 2.39A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>3io1_A Aminobenzoyl-glutamate utilization protein; peptidase_M20D superfamily, protein structure initiative II, NYSGXRC, structural genomics; 2.50A {Klebsiella pneumoniae subsp} Back     alignment and structure
>2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A {Xanthomonas campestris} PDB: 2f8h_A Back     alignment and structure
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae} Back     alignment and structure
>2wzn_A TET3, 354AA long hypothetical operon protein FRV; protease, hydrolase, thermophilic, SELF-compartmentalising; 1.90A {Pyrococcus horikoshii} PDB: 2pe3_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query428
d1tkja1277 Aminopeptidase {Streptomyces griseus [TaxId: 1911] 99.28
d1rtqa_291 Aminopeptidase {Aeromonas proteolytica [TaxId: 671 99.14
d2afwa1329 Glutaminyl-peptide cyclotransferase, QPCT {Human ( 99.13
d1de4c3294 Transferrin receptor ectodomain, protease-like dom 98.97
d3bi1a3304 Glutamate carboxypeptidase II FOLH1 {Human (Homo s 98.89
d1yloa2264 Aminopeptidase YpdE {Shigella flexneri [TaxId: 623 98.69
d2fvga2255 Endoglucanase TM1049 {Thermotoga maritima [TaxId: 98.54
d1vhoa2248 Putative endoglucanase TM1048, catalytic domain {T 98.52
d1vhea2275 Hypothetical protein YsdC, catalytic domain {Bacil 98.49
d1cg2a1276 Carboxypeptidase G2, catalytic domain {Pseudomonas 98.26
d2grea2233 Deblocking aminopeptidase YhfE {Bacillus cereus [T 98.09
d1z2la1293 Allantoate amidohydrolase AllC catalytic domain {E 97.58
g1q7l.1280 Aminoacylase-1, catalytic domain {Human (Homo sapi 97.49
d1vgya1262 Succinyl-diaminopimelate desuccinylase, catalytic 97.48
d1r3na1322 Peptidase-like beta-alanine synthase, catalytic do 97.16
d1fnoa4295 Peptidase T (tripeptidase), catalytic domain {Salm 96.98
d1lfwa1272 Aminopeptidase PepV {Lactobacillus delbrueckii [Ta 96.49
d1ysja1261 Protein YxeP {Bacillus subtilis [TaxId: 1423]} 91.42
d1y0ya2255 Frv operon protein FrvX, catalytic domain {Pyrococ 91.25
d1xmba1273 IAA-amino acid hydrolase, catalytic domain {Mouse- 85.44
>d1tkja1 c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces griseus [TaxId: 1911]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Aminopeptidase
species: Streptomyces griseus [TaxId: 1911]

Probab=99.28  E-value=1.2e-11  Score=118.47  Aligned_cols=128  Identities=10%  Similarity=0.097  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHhhhcCCCCC-------chhhHHHHHHHHHHcCCceeeeecccCCCcCCCcccccCCCCCccccCCccccc
Q 014238           73 EANKLIKELNNLHSNPLGA-------TTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLY  145 (428)
Q Consensus        73 ~a~~y~~~l~~~~~~~~~~-------~~~~~~~l~~~l~~lGle~~~q~f~~~~~~f~~~~~f~~~~~~~~~~~~~~~~~  145 (428)
                      .++++..+|..+.....+.       ....++||.++|+++|+++..|.|+..                        ...
T Consensus         8 ~~~~~l~~l~~~~~~~~g~R~~gs~~~~~a~~yi~~~l~~~G~~~~~~~~~~~------------------------~~~   63 (277)
T d1tkja1           8 NVKAHLTQLSTIAANNGGNRAHGRPGYKASVDYVKAKLDAAGYTTTLQQFTSG------------------------GAT   63 (277)
T ss_dssp             HHHHHHHHHHHHHHTTTTCCCTTSHHHHHHHHHHHHHHHHHTCEEEEEEEEET------------------------TEE
T ss_pred             HHHHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEeeecc------------------------Ccc
Confidence            3556666666543322211       124689999999999999999998643                        246


Q ss_pred             cceEEEEEcCCCCCCceEEEEEEeeccC---CCCCcchhhHHHHHHHHHHHhcCCC-CccceEEEeeCCCCCCchhHHHH
Q 014238          146 GINTVGIIRAPRGDGKEAIVLVTPYNAV---KGGVRETLSLGIAYSVFSLLTRVTW-LAKDIIWLVADSQYGEYAPVAAW  221 (428)
Q Consensus       146 G~NvygilrApRgdgtEaiVL~ap~~~~---~~~~~~~~gval~LaLa~yl~~~~~-wAKDIIfv~~D~~~~~~~G~~AW  221 (428)
                      +.||+|.++++  +..|.|||.+|||+.   .|+.++++|+|.+|.+++.|++..+ ..++|+|++.++++.+..|.++|
T Consensus        64 ~~Nvi~~~~g~--~~~~~i~~~aH~D~~~~~~Ga~D~~sgva~~le~ar~l~~~~~~~~~~i~~~~~~~EE~g~~Gs~~~  141 (277)
T d1tkja1          64 GYNLIANWPGG--DPNKVLMAGAHLDSVSSGAGINDNGSGSAAVLETALAVSRAGYQPDKHLRFAWWGAEELGLIGSKFY  141 (277)
T ss_dssp             EEEEEEECSCS--EEEEEEEEEEECCCCTTSCCTTTTHHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGGGTSHHHHHH
T ss_pred             ccCeEEEECCC--CCCCEEEEEccccccccccccCCCccchHHHHHHHHHHHhhcCCCCcceEEeecccccccccccHHH
Confidence            78999999874  345899999999975   3777889999999999999998765 46899999999998889999999


Q ss_pred             HHHhc
Q 014238          222 LRDYH  226 (428)
Q Consensus       222 L~aYh  226 (428)
                      ++.+.
T Consensus       142 ~~~~~  146 (277)
T d1tkja1         142 VNNLP  146 (277)
T ss_dssp             HHHSC
T ss_pred             HHHhh
Confidence            98764
>d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica [TaxId: 671]} Back     information, alignment and structure
>d2afwa1 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransferase, QPCT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1de4c3 c.56.5.5 (C:122-189,C:383-608) Transferrin receptor ectodomain, protease-like domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II FOLH1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yloa2 c.56.5.4 (A:1-66,A:148-345) Aminopeptidase YpdE {Shigella flexneri [TaxId: 623]} Back     information, alignment and structure
>d2fvga2 c.56.5.4 (A:1-64,A:149-339) Endoglucanase TM1049 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vhoa2 c.56.5.4 (A:3-69,A:153-333) Putative endoglucanase TM1048, catalytic domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vhea2 c.56.5.4 (A:3-72,A:163-367) Hypothetical protein YsdC, catalytic domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1cg2a1 c.56.5.4 (A:26-213,A:327-414) Carboxypeptidase G2, catalytic domain {Pseudomonas sp., strain rs-16 [TaxId: 306]} Back     information, alignment and structure
>d2grea2 c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptidase YhfE {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1z2la1 c.56.5.4 (A:4-212,A:330-413) Allantoate amidohydrolase AllC catalytic domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vgya1 c.56.5.4 (A:2-180,A:294-376) Succinyl-diaminopimelate desuccinylase, catalytic domain {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1r3na1 c.56.5.4 (A:18-247,A:364-455) Peptidase-like beta-alanine synthase, catalytic domain {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} Back     information, alignment and structure
>d1fnoa4 c.56.5.4 (A:1-207,A:321-408) Peptidase T (tripeptidase), catalytic domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1lfwa1 c.56.5.4 (A:1-186,A:383-468) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]} Back     information, alignment and structure
>d1ysja1 c.56.5.4 (A:4-177,A:293-379) Protein YxeP {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1y0ya2 c.56.5.4 (A:164-351,A:6-72) Frv operon protein FrvX, catalytic domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1xmba1 c.56.5.4 (A:37-215,A:335-428) IAA-amino acid hydrolase, catalytic domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure