Citrus Sinensis ID: 014250

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------43
Protein Sequence
MSLTRVKSPGWAAFDLKQRQKQGLAPETDKDSYPPISSTLTSLRNCENVSRNTDVLVKPFSSVLRPSVEFPTLTEENECDYKGKHGHKAIEQHSRDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMVSSSGSAEENKETKIAESSSTIDESPCYRKGGEICFLEKALDLSNLSTTTGDGVNDNFIESVDVRASSVINVSDKDDGMKSIMERLSSLPIEPEWEEDDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKAAKEILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVITGIGNHSRGQAALPTAVKNFLSESGYRFDEARPGVITVRPKFRQR
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHcccccccHHHHHHHccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEccccccccccccHHHHHHHHHHcccccccccccEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEHEEHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccHHccccHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEcccHHcHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHcccccEEcccccccEEEEEEccccccccccccHHHHHHHHHHcccccccccccEEEEccccccc
Coil and Loop (DISEMBL)
msltrvkspgwaafdlkqrqkqglapetdkdsyppisstltslrncenvsrntdvlvkpfssvlrpsvefptlteenecdykgkhghkaIEQHSRDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGmvsssgsaeenketkiaessstidespcyrkggeiCFLEKaldlsnlstttgdgvndnfiESVDVRAssvinvsdkddgMKSIMERLsslpiepeweeddVYLVHRKDAMKMMRSASQHSKAannaylrgdhfsaQQHSLKARKEWLIAERLNSKAAKEILGirnsendmwkldLHGLHAAEAVQALQERLQKIemqrpmncsvspkkvkskngmvctaslesfgcmdmEVVDKQRSSLRQIQKSLQVITGignhsrgqaaLPTAVKNFLsesgyrfdearpgvitvrpkfrqr
Flexible Loop (DISEMBL)
msltrvkspgwaafdlkqrqkqglapetdkdsyppisstltslrncenVSRNTDvlvkpfssvlrpsvefptltEENECDYKGKHGHKAIEQHSRDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGmvsssgsaeenketkiaessstidespcyrKGGEICFLEKALDLSNLStttgdgvndnfiesvdvrassvinvsdkddgmkSIMERlsslpiepeweeDDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKAAKEILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIemqrpmncsvspkkvkskngMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVITGignhsrgqaaLPTAVKNFLsesgyrfdearpgvitvrpkfrqr
Low Complexity Region (SEG)
MSLTRVKSPGWAAFDLKQRQKQGLAPETDKDSYPPISSTLTSLRNCENVSRNTDVLVKPFSSVLRPSVEFPTLTEENECDYKGKHGHKAIEQHSRDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMVSSSGSAEENKETKIAESSSTIDESPCYRKGGEICFLEKALDLSNLSTTTGDGVNDNFIESVDVRASSVINVSDKDDGMKSIMERLSSLPIEPEWEEDDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKAAKEILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVITGIGNHSRGQAALPTAVKNFLSESGYRFDEARPGVITVRPKFRQR
Disordered region (IsUnstruct)
***************************************************NTDVLVKPFSSVLRPSVEFPTL**********************DLALKKLKALHSWADNSLIEDLMEAV****************************************CYRKGGEICFLEKALDLSNLSTTTGDGVNDNFIESVDVRASSVI****************************DVYLV*************************************ARKEWLIAERLNSKAAKEILGIRNSENDMWKLDLHGLHAAEAVQALQ**************************MVCTASLESFGCMDMEVVD********IQKSLQVITGIGNHSRGQAALPTAVKNFLSESGYRFD*****VI*********
Disordered Region (DISOPRED)
*****************************************************************************************************LKALHSWADNSLIEDLMEAVDNDIKRASNLL******************************************************************************************************VYLVHRKDAMKMMRSASQH******************HSLKARKEWLIAERLNSKAAKEILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQ****************************CMDME*VDK*****RQIQKSLQVITGIGNHSRGQAALPTAVKNFLSESGYRFDEARPGVITVRPKF***
Disordered Region (DISEMBL)
********PGWAAFDLK***************YPPISSTLTSLRNCENVSRNTDVLVKPFSSVLRPSVEFPTLTEENECDYKGKHGHKAIEQHSRDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGM************************SPCYRKGGEICFLEKALDLSNLSTTTGDGVNDNFIESVDVRASSVINVSDKDDGMKSIMERLSSLPIEPEWEEDDVYLVHRKDAMK**********AANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKAAKEILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQRPM************NGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVITGIGNHSRGQAALPTAVKNFLSESGYRFDEARPGVITVRPKFRQR
Disordered Region (DISPRO)
**********WAAF**K*RQKQ***********************************KPFSSVLRPSVEFPTLT*****************QHSRDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMVS***************************************************************************GMKSIMERLSSLPIEPEWEEDDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKAAKEILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQRPM***********************FGCMDMEVVDKQRSSLRQIQKSLQVITGIGNHSRGQAALPTAVKNFLSESGYRFDEARPGVITVRPKFR**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSLTRVKSPGWAAFDLKQRQKQGLAPETDKDSYPPISSTLTSLRNCENVSRNTDVLVKPFSSVLRPSVEFPTLTEENECDYKGKHGHKAIEQHSRDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMVSSSGSAEENKETKIAESSSTIDESPCYRKGGEICFLEKALDLSNLSTTTGDGVNDNFIESVDVRASSVINVSDKDDGMKSIMERLSSLPIEPEWEEDDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKAAKEILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVITGIGNHSRGQAALPTAVKNFLSESGYRFDEARPGVITVRPKFRQR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	428	2.2.26 [Sep-21-2011]
Q86UW6	1770	NEDD4-binding protein 2 O	yes	no	0.219	0.053	0.336	2e-05
Q08954	240	Smr domain-containing pro	yes	no	0.294	0.525	0.296	3e-05

>sp|Q86UW6|N4BP2_HUMAN NEDD4-binding protein 2 OS=Homo sapiens GN=N4BP2 PE=1 SV=2

 Score = 51.2 bits (121), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 7/101 (6%)

Query: 324  RLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQI--QKSLQ 381
             L  IE+   +N S+ P+ V   +G+    +LE      M V++K+    +Q   +  L 
Sbjct: 1671 HLAAIEIFEKVNASLLPQNVLDLHGLHVDEALEHL----MRVLEKKTEEFKQNGGKPYLS 1726

Query: 382  VITGIGNHSRGQAA-LPTAVKNFLSESGYRFDEARPGVITV 421
            VITG GNHS+G  A +  AV  +L    +RF E +PG + V
Sbjct: 1727 VITGRGNHSQGGVARIKPAVIKYLISHSFRFSEIKPGCLKV 1767

Has 5'-polynucleotide kinase and nicking endonuclease activity. May play a role in DNA repair or recombination.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: -EC: .EC: -EC: .EC: -

>sp|Q08954|YP199_YEAST Smr domain-containing protein YPL199C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPL199C PE=1 SV=1

 Score = 50.4 bits (119), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 67/128 (52%), Gaps = 2/128 (1%)

Query: 233 DDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKAAK 292
           D+ Y   R+ A +  +   Q S  +  AY +GD   A + S K++ +   AE  N +AA+
Sbjct: 23  DEEYQRLRRLADEAYKKRDQLSHESQTAYQQGDKKLAHELSEKSKAQLKTAEDFNMQAAE 82

Query: 293 EILGIRNSENDMWKLDLHGLHAAEAVQALQERLQ-KIEMQRPMNCSVSPKKVKSKNGMV- 350
            +    N+++   ++DLHGL+  EA+  LQ+R++  I+   P    +  K + S+NG+  
Sbjct: 83  YVFVENNADSSSNEIDLHGLYVKEALFILQKRIKFAIDHNEPQLNVIVGKGLHSQNGIAK 142

Query: 351 CTASLESF 358
              S+E F
Sbjct: 143 LKPSIEEF 150

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	428
225463171	435	PREDICTED: uncharacterized protein LOC10	0.992	0.977	0.602	1e-135
224144477	429	predicted protein [Populus trichocarpa]	0.929	0.927	0.523	1e-108
15237781	435	smr (Small MutS Related) domain-containi	0.981	0.965	0.501	1e-107
297812499	436	hypothetical protein ARALYDRAFT_910364 [	0.983	0.965	0.496	1e-105
356568571	432	PREDICTED: uncharacterized protein LOC10	0.964	0.956	0.479	2e-96
124359484	432	Smr protein/MutS2 C-terminal [Medicago t	0.955	0.946	0.480	7e-96
357507993	431	hypothetical protein MTR_7g081260 [Medic	0.955	0.948	0.480	8e-96
357507995	420	hypothetical protein MTR_7g081260 [Medic	0.955	0.973	0.480	9e-96
363807260	427	uncharacterized protein LOC100809786 [Gl	0.948	0.950	0.470	5e-94
449520321	608	PREDICTED: uncharacterized protein LOC10	0.971	0.684	0.459	2e-87

>gi|225463171|ref|XP_002267329.1| PREDICTED: uncharacterized protein LOC100263151 [Vitis vinifera]

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 264/438 (60%), Positives = 309/438 (70%), Gaps = 13/438 (2%)

Query: 1   MSLTRVKSPGWAAFDLKQRQKQGLAPETDKDSYPPISSTLTSLRNCENVSRNTDVLVKPF 60
           MS    KSPGWAAFDLKQRQKQGL PE DK+ YPPI S+ TSLR C N + N     + F
Sbjct: 1   MSSASGKSPGWAAFDLKQRQKQGLEPELDKEPYPPIPSSFTSLRPCRNSASN-GCSGRSF 59

Query: 61  SSVLRPSVEFPTLTEENECDYKGKHGHKAIEQHSRD-------LALKKLKALHSWADNSL 113
           SS+L PSV FPTL E  +C    + G+   +Q ++        +A  KLK L+SWADNSL
Sbjct: 60  SSLLVPSVNFPTLEENKDCKKPMQGGNSGNKQQTKVAEVSNLVIAFNKLKELYSWADNSL 119

Query: 114 IEDLMEAVDNDIKRASNLLEGMVSSSGSAEENKETKIAESSSTIDESP---CYRKGGEIC 170
           IED+M AVDNDI +AS LL  MVS+ GS EENKET I E +ST   +P   C  +     
Sbjct: 120 IEDIMAAVDNDIDKASTLLGAMVST-GSFEENKETSIVELNST-SGNPYENCKLQADNGV 177

Query: 171 FLEKALDLSNLSTTTGDGVNDNFIESVDVRASSVINVSDKDDGMKSIMERLSSLPIEPEW 230
           FL     LS LS+T GD + DN     D   SS  N+ D    M  I+ R+ S+PIEPEW
Sbjct: 178 FLGNGTVLSELSSTIGDLLIDNNKGLTDECGSSGKNLFDDAADMTLILGRMKSIPIEPEW 237

Query: 231 EEDDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKA 290
           EEDDVYL HRKDA++ MRSASQHS+AA NA+LRGDH SA+Q SLKA+ EW+ AERLNSKA
Sbjct: 238 EEDDVYLSHRKDAIRFMRSASQHSRAATNAFLRGDHVSAKQFSLKAKDEWVKAERLNSKA 297

Query: 291 AKEILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMV 350
           A EIL IRNS ND+WKLDLHGLHAAEAVQALQE L KIE Q P N SVSP + K+K G++
Sbjct: 298 ANEILDIRNSNNDLWKLDLHGLHAAEAVQALQEHLWKIETQMPFNRSVSPNRAKTKVGIL 357

Query: 351 CTASLESFGCMDMEVVDKQRSSLRQIQKSLQVITGIGNHSRGQAALPTAVKNFLSESGYR 410
            + SLESF C+D E +DKQ +  RQ   SLQVITG GNHSRGQAALPTAV++FL+E GYR
Sbjct: 358 RSPSLESFSCVDNEELDKQWTLSRQRPTSLQVITGRGNHSRGQAALPTAVRSFLNEHGYR 417

Query: 411 FDEARPGVITVRPKFRQR 428
           F+EARPGVI VRPKFR R
Sbjct: 418 FEEARPGVIAVRPKFRHR 435

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144477|ref|XP_002325302.1| predicted protein [Populus trichocarpa] gi|222862177|gb|EEE99683.1| predicted protein [Populus trichocarpa]

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 235/449 (52%), Positives = 297/449 (66%), Gaps = 51/449 (11%)

Query: 5   RVKSPGWAAFDLKQRQKQGLAPETD-KDSYPPISSTLTSLRNCENVSRNTDV---LVKPF 60
           RVKS GWAAFDLKQRQK G   E D KD +P I      L     + RN DV     K F
Sbjct: 7   RVKSSGWAAFDLKQRQKDG---EVDGKDPFPAIGD----LPVTGGLRRNDDVGGLSSKSF 59

Query: 61  SSVLRP--SVEFPTLTEENECDYKGK-----HGH----KAIEQH---SRDLALKKLKALH 106
           SSVL+P  S  FP L  +N  +   K      G+    K IE+    S  L L++LK +H
Sbjct: 60  SSVLQPPASAGFPALKTQNVNNLTAKVADFSAGYRVSDKVIEEKNGGSVLLDLQRLKEIH 119

Query: 107 SWADNSLIEDLMEAVDNDIKRASNLLEGMVSSSGSAEENKETKIAESSSTIDESPCYRKG 166
            WAD SLIED+M +VDND ++A  LL GMVS++   E              DE   +  G
Sbjct: 120 GWADFSLIEDVMVSVDNDAEKACVLLNGMVSNADFDE--------------DEGAKFNSG 165

Query: 167 GEICFLEKAL--DLSNLSTTTGDGVNDNFIE----SVDVRASSVINVS-DKDDGMKSIME 219
                  K+L  D+++LS+T  D + DN       S+++R    ++ S D    MK I+ 
Sbjct: 166 -----FNKSLADDIADLSSTLEDALKDNDHNNDNNSIELREDVGVSSSVDAAANMKLILG 220

Query: 220 RLSSLPIEPEWEEDDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKE 279
            L S+P+EPEWEEDDVYL HRK+A++MMR ASQHS+AA NA+LR DHFSAQQHSL+AR++
Sbjct: 221 HLKSIPVEPEWEEDDVYLSHRKNALRMMRLASQHSRAATNAFLRRDHFSAQQHSLRAREK 280

Query: 280 WLIAERLNSKAAKEILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVS 339
           W  AE+LN+KAAKEIL IRNS+ND WKLDLHGLHAAEA QALQE L KIE   P N S+S
Sbjct: 281 WSAAEQLNAKAAKEILSIRNSDNDPWKLDLHGLHAAEAGQALQEHLLKIETLVPNNRSIS 340

Query: 340 PKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVITGIGNHSRGQAALPTA 399
           P ++K+KNG++ ++  ++F  +D E +DKQ+++ RQ   SLQVITG+GNHSRGQAALPTA
Sbjct: 341 PCRIKTKNGILHSSPFDAFSTVDAENLDKQQATFRQRPTSLQVITGVGNHSRGQAALPTA 400

Query: 400 VKNFLSESGYRFDEARPGVITVRPKFRQR 428
           VK+FL+++GYRFDE RPGVITVRPKFR R
Sbjct: 401 VKSFLNDNGYRFDETRPGVITVRPKFRHR 429

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237781|ref|NP_197743.1| smr (Small MutS Related) domain-containing protein [Arabidopsis thaliana] gi|8809708|dbj|BAA97249.1| unnamed protein product [Arabidopsis thaliana] gi|22531192|gb|AAM97100.1| unknown protein [Arabidopsis thaliana] gi|23198016|gb|AAN15535.1| unknown protein [Arabidopsis thaliana] gi|332005795|gb|AED93178.1| smr (Small MutS Related) domain-containing protein [Arabidopsis thaliana]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 221/441 (50%), Positives = 296/441 (67%), Gaps = 21/441 (4%)

Query: 1   MSLTRVKSPGWAAFDLKQRQKQGLAPETDKDSYPPISSTLTSLRNCEN-VSRNTDVLVKP 59
           MS  + KS GW AFDLKQRQKQGL  E + D +PP+S+++ +       + RN +   K 
Sbjct: 1   MSWMKGKSSGWTAFDLKQRQKQGLESEVEGDPFPPVSTSVNASFGVRGRLRRNHEPSEKS 60

Query: 60  FSSVLRPSVEFPTLTEENECDYKGKHG-------HKAIEQHSRDLALKKLKALHSWADNS 112
           FSSVL P   FP LTE  +C  + + G         ++  +S DLA  KLK ++SWAD++
Sbjct: 61  FSSVLLPPSRFPALTENKDCGNQERGGCCRRKPDTLSLPVNSHDLAFTKLKEMNSWADDN 120

Query: 113 LIEDLMEAVDNDIKRASNLLEGMVSSSGSAEENKETKIAESSSTIDESPCYRKGGEICFL 172
           LI D++ + ++D + A   L+GMVSS G  +E   +KI E  S+ +    YR   +   +
Sbjct: 121 LIRDVLLSTEDDFEMALAFLKGMVSS-GKEDEEPTSKI-EGYSSDNRRSEYRTFEKT--V 176

Query: 173 EKALDLSNLSTTTGDGVNDNFIESVDVRASSVINVSDK----DD--GMKSIMERLSSLPI 226
             ++ ++  ST    G  D  +E+ D  +S ++N SD     DD   + SI++RL S+PI
Sbjct: 177 TSSVKMAARSTFEDAGKYD--LENSDG-SSFLVNASDNEKFPDDISELDSIIQRLQSIPI 233

Query: 227 EPEWEEDDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERL 286
           EPEWEEDD+YL HRKDA+K+MRSAS HS+AA NA+ R DH SA+QHS KAR++WL AE+L
Sbjct: 234 EPEWEEDDLYLSHRKDALKVMRSASNHSRAAQNAFQRYDHASAKQHSDKAREDWLAAEKL 293

Query: 287 NSKAAKEILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSK 346
           N++AAK+I+GI N +ND+WKLDLHGLHA EAVQALQERLQ IE    +N SVSP + +SK
Sbjct: 294 NAEAAKKIIGITNKDNDIWKLDLHGLHATEAVQALQERLQMIEGHFTVNRSVSPNRGRSK 353

Query: 347 NGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVITGIGNHSRGQAALPTAVKNFLSE 406
           N  + +AS E FG +D E +  QR+S R+++ SLQVITGIG HSRGQA+LP AVK F  +
Sbjct: 354 NAALRSASQEPFGRLDEEGMHCQRTSSRELRNSLQVITGIGKHSRGQASLPLAVKTFFED 413

Query: 407 SGYRFDEARPGVITVRPKFRQ 427
           + YRFDE RPGVITVRPKFR 
Sbjct: 414 NRYRFDETRPGVITVRPKFRH 434

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812499|ref|XP_002874133.1| hypothetical protein ARALYDRAFT_910364 [Arabidopsis lyrata subsp. lyrata] gi|297319970|gb|EFH50392.1| hypothetical protein ARALYDRAFT_910364 [Arabidopsis lyrata subsp. lyrata]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 219/441 (49%), Positives = 289/441 (65%), Gaps = 20/441 (4%)

Query: 1   MSLTRVKSPGWAAFDLKQRQKQGLAPET-DKDSYPPISSTL-TSLRNCENVSRNTDVLVK 58
           MS  + KS GW AFDLKQRQKQGL  E  D D +PP+S+++  SL     + R+ +   K
Sbjct: 1   MSWMKGKSSGWTAFDLKQRQKQGLESEVKDDDPFPPVSTSVNASLGVRGKLIRDHEPSEK 60

Query: 59  PFSSVLRPSVEFPTLTEENECDY-------KGKHGHKAIEQHSRDLALKKLKALHSWADN 111
            FSSVL P   FP LTE  +C         K K G   +  +S D A  KLK ++SWAD+
Sbjct: 61  SFSSVLLPPSRFPALTENKDCGNEERGGGCKRKPGTSILPVNSHDSAFMKLKEMNSWADD 120

Query: 112 SLIEDLMEAVDNDIKRASNLLEGMVSSSGSAEENKETKIAESSSTIDESPCYRKGGEICF 171
           +LI D++ + +++ + A + L+GMVSSS  AEE   T   E  S+ +    Y+  G+   
Sbjct: 121 NLIRDVLLSTEDNFEMALDFLKGMVSSSKEAEE--PTSKIEGYSSDNRRSEYKTFGKT-- 176

Query: 172 LEKALDLSNLSTTTGDGVNDNFIESVD-----VRASSVINVSDKDDGMKSIMERLSSLPI 226
           +  ++ ++  ST    G  D  ++  D     V AS     SD    + SI++RL S+PI
Sbjct: 177 VTSSVKMAARSTCEDAGKYD--LQESDGSPPLVNASDSEKFSDDISELDSIIQRLQSIPI 234

Query: 227 EPEWEEDDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERL 286
           EPEWEEDD+YL HRKDA+KMMRSA+ HS+AA NA+ R DH SA+QHS KAR++WL A +L
Sbjct: 235 EPEWEEDDLYLSHRKDALKMMRSAANHSRAAQNAFQRYDHASAKQHSEKAREDWLTAAKL 294

Query: 287 NSKAAKEILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSK 346
           N++AAK+I+GI N +ND+WKLDLHGLHA EAVQALQERLQKIE    +N SVSP +  SK
Sbjct: 295 NAEAAKKIIGITNKDNDIWKLDLHGLHATEAVQALQERLQKIEGHFTVNRSVSPNRGSSK 354

Query: 347 NGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVITGIGNHSRGQAALPTAVKNFLSE 406
           N  + +AS E FG +D E +  QR+S R+++ S+QV+TGIG HSRG A+LP AVK F  +
Sbjct: 355 NAALRSASQEPFGRLDGEGMHCQRTSSREVRNSVQVVTGIGKHSRGHASLPLAVKTFFED 414

Query: 407 SGYRFDEARPGVITVRPKFRQ 427
           + YRFDE RPGVITVRPKFR 
Sbjct: 415 NRYRFDETRPGVITVRPKFRH 435

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568571|ref|XP_003552484.1| PREDICTED: uncharacterized protein LOC100810197 [Glycine max]

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 208/434 (47%), Positives = 277/434 (63%), Gaps = 21/434 (4%)

Query: 1   MSLTRVKSPGWAAFDLKQRQKQGLAPETDKDSYPPISSTLTSLRNCENVSRNTDVLVKPF 60
           MS  + +S GW AFDLKQR+ +    E D D +P I  T       + + +   V  KPF
Sbjct: 12  MSWAKGQSSGWTAFDLKQRKNKDFESEVDDDPFPAIGPT-------DPIIKKNHVPAKPF 64

Query: 61  SSVLRPSVEFPTLTEENEC-------DYKGKHGHKAIEQHSRDLALKKLKALHSWADNSL 113
           SSVL P+  FP L E+          D  GK+   A  Q   +LA+KKL+  H WA++SL
Sbjct: 65  SSVLLPTKNFPPLNEDGNSKKAMLGSDSDGKYC-GATTQEDVNLAIKKLREQHLWAEHSL 123

Query: 114 IEDLMEAVDNDIKRASNLLEGMVSSSGSAEENKETKIAESSSTIDESPCYRKGGEICFLE 173
           I+D+  AV+N+I +A++LLE M  +  + EE+K   I   S+T D++PC  K  +    E
Sbjct: 124 IDDIFTAVNNNIDKATSLLETMAPAV-NFEESK-VSINPRSTTSDDTPCMDKTDDSLTSE 181

Query: 174 KALDLSNLSTTTGDGVNDNFIESVDVRASSVINVSDKDDGMKSIMERLSSLPIEPEWEED 233
           K  D         D + DN  +  D  A S   +S  D  ++  M+ L+S+P+EPEWE+D
Sbjct: 182 KVEDDIPFDYNLVDNLQDNDKDLEDRNAPSGQKLSGVD-YLRCKMKLLNSVPVEPEWEDD 240

Query: 234 DVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKAAKE 293
           D+Y+ +RKDA++ MR AS+HSKAA++A+LRGDHFSAQ HS+KAR EW  AE LNS AAK+
Sbjct: 241 DIYISNRKDALRTMRLASRHSKAASSAFLRGDHFSAQHHSMKARAEWHTAEELNSDAAKK 300

Query: 294 ILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTA 353
           IL IRN+END+W+LDLHGLHA EA+QALQE L +IE Q     S +   VK +NG+   +
Sbjct: 301 ILSIRNNENDIWRLDLHGLHATEAIQALQEHLYRIECQGFSKSSATSNGVK-ENGL-GHS 358

Query: 354 SLESFGCMDMEVVDKQRSSLRQIQKSLQVITGIGNHSRGQAALPTAVKNFLSESGYRFDE 413
           +L SF  MD E +D Q + LR    +L VITGIGNHSRG AALP AV++FL+E+ YRF+E
Sbjct: 359 TLGSFNFMDREKLDTQ-APLRLRPLALHVITGIGNHSRGLAALPAAVRSFLNENRYRFEE 417

Query: 414 ARPGVITVRPKFRQ 427
            RPGVITV PKFRQ
Sbjct: 418 MRPGVITVWPKFRQ 431

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124359484|gb|ABN05922.1| Smr protein/MutS2 C-terminal [Medicago truncatula]

 Score =  357 bits (916), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 210/437 (48%), Positives = 275/437 (62%), Gaps = 28/437 (6%)

Query: 1   MSLTRVKSP-GWAAFDLKQRQKQGLAPETDKDSYPPISSTLTSLRNCENVSRNTDVLVKP 59
           MS +R K P GW AFDLKQ+ K  +  E DKD +PPI S+ +S+R+ +   +   V +KP
Sbjct: 13  MSWSRGKQPSGWTAFDLKQKMKNSIDSEVDKDPFPPIGSS-SSMRHGDKFVKKKHVPLKP 71

Query: 60  FSSVLRPSVEFPTLTEENECDYKGKHGHKAI---------EQHSRDLALKKLKALHSWAD 110
           FSSVL P+V FP L E         +G KA+          Q   +   K LK  H WA+
Sbjct: 72  FSSVLVPNVNFPPLKE-------AGNGQKAVLGSDSCGTTAQEDVNGPTKMLKEQHPWAE 124

Query: 111 NSLIEDLMEAVDNDIKRASNLLEGMVSSSGSAEENKETKIAESSSTIDESPCYRKGGEIC 170
           NSLI+D++ AV+N++ +A  LLE M S+    E    +         D+     K GE  
Sbjct: 125 NSLIDDILAAVNNNVDKAVALLETMASAVNFEEHKVLSNPHPRPLISDDVTRVVKTGESL 184

Query: 171 FLEKALDLSNLSTTTGDGVNDNFIESVDVRASSVINVSDKDDGMKSIMERLSSLPIEPEW 230
            LE   D     +     + DN  +  +  A S    SD       +M+ L+S+P+EPEW
Sbjct: 185 ALEMVKDDILFHSNIVGQLQDNNKDLENRYAFSGQKFSD-------VMDLLNSVPVEPEW 237

Query: 231 EEDDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKA 290
           EEDD+YL HRKDA+K MRSAS+HSKAA NA+L+G+HFSAQQHS +AR+EW  A++LNS+A
Sbjct: 238 EEDDIYLSHRKDALKTMRSASRHSKAAANAFLKGEHFSAQQHSARAREEWHNADKLNSEA 297

Query: 291 AKEILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMV 350
           A +IL IRNS+ND+ +LDLHGLHAAEAVQALQE L++IE Q   + S++P     KNG  
Sbjct: 298 ATKILSIRNSDNDISRLDLHGLHAAEAVQALQEHLRRIESQG-FSKSLAPSNNAKKNG-D 355

Query: 351 CTASLESFGCMDMEVVDKQRSSLRQIQKSLQVITGIGNHSRGQAALPTAVKNFLSESGYR 410
             ++L S   MD E +DKQ   LR    ++ VITG+GNHSRGQAALPTAV++FLSE+ YR
Sbjct: 356 AHSTLGSLNLMDWENLDKQ-VPLRLRSLAVHVITGVGNHSRGQAALPTAVRSFLSENRYR 414

Query: 411 FDEARPGVITVRPKFRQ 427
           F+E RPGVITV PKFRQ
Sbjct: 415 FEEMRPGVITVWPKFRQ 431

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507993|ref|XP_003624285.1| hypothetical protein MTR_7g081260 [Medicago truncatula] gi|355499300|gb|AES80503.1| hypothetical protein MTR_7g081260 [Medicago truncatula]

 Score =  357 bits (915), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 210/437 (48%), Positives = 275/437 (62%), Gaps = 28/437 (6%)

Query: 1   MSLTRVKSP-GWAAFDLKQRQKQGLAPETDKDSYPPISSTLTSLRNCENVSRNTDVLVKP 59
           MS +R K P GW AFDLKQ+ K  +  E DKD +PPI S+ +S+R+ +   +   V +KP
Sbjct: 12  MSWSRGKQPSGWTAFDLKQKMKNSIDSEVDKDPFPPIGSS-SSMRHGDKFVKKKHVPLKP 70

Query: 60  FSSVLRPSVEFPTLTEENECDYKGKHGHKAI---------EQHSRDLALKKLKALHSWAD 110
           FSSVL P+V FP L E         +G KA+          Q   +   K LK  H WA+
Sbjct: 71  FSSVLVPNVNFPPLKE-------AGNGQKAVLGSDSCGTTAQEDVNGPTKMLKEQHPWAE 123

Query: 111 NSLIEDLMEAVDNDIKRASNLLEGMVSSSGSAEENKETKIAESSSTIDESPCYRKGGEIC 170
           NSLI+D++ AV+N++ +A  LLE M S+    E    +         D+     K GE  
Sbjct: 124 NSLIDDILAAVNNNVDKAVALLETMASAVNFEEHKVLSNPHPRPLISDDVTRVVKTGESL 183

Query: 171 FLEKALDLSNLSTTTGDGVNDNFIESVDVRASSVINVSDKDDGMKSIMERLSSLPIEPEW 230
            LE   D     +     + DN  +  +  A S    SD       +M+ L+S+P+EPEW
Sbjct: 184 ALEMVKDDILFHSNIVGQLQDNNKDLENRYAFSGQKFSD-------VMDLLNSVPVEPEW 236

Query: 231 EEDDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKA 290
           EEDD+YL HRKDA+K MRSAS+HSKAA NA+L+G+HFSAQQHS +AR+EW  A++LNS+A
Sbjct: 237 EEDDIYLSHRKDALKTMRSASRHSKAAANAFLKGEHFSAQQHSARAREEWHNADKLNSEA 296

Query: 291 AKEILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMV 350
           A +IL IRNS+ND+ +LDLHGLHAAEAVQALQE L++IE Q   + S++P     KNG  
Sbjct: 297 ATKILSIRNSDNDISRLDLHGLHAAEAVQALQEHLRRIESQG-FSKSLAPSNNAKKNG-D 354

Query: 351 CTASLESFGCMDMEVVDKQRSSLRQIQKSLQVITGIGNHSRGQAALPTAVKNFLSESGYR 410
             ++L S   MD E +DKQ   LR    ++ VITG+GNHSRGQAALPTAV++FLSE+ YR
Sbjct: 355 AHSTLGSLNLMDWENLDKQ-VPLRLRSLAVHVITGVGNHSRGQAALPTAVRSFLSENRYR 413

Query: 411 FDEARPGVITVRPKFRQ 427
           F+E RPGVITV PKFRQ
Sbjct: 414 FEEMRPGVITVWPKFRQ 430

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507995|ref|XP_003624286.1| hypothetical protein MTR_7g081260 [Medicago truncatula] gi|355499301|gb|AES80504.1| hypothetical protein MTR_7g081260 [Medicago truncatula]

 Score =  357 bits (915), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 210/437 (48%), Positives = 275/437 (62%), Gaps = 28/437 (6%)

Query: 1   MSLTRVKSP-GWAAFDLKQRQKQGLAPETDKDSYPPISSTLTSLRNCENVSRNTDVLVKP 59
           MS +R K P GW AFDLKQ+ K  +  E DKD +PPI S+ +S+R+ +   +   V +KP
Sbjct: 1   MSWSRGKQPSGWTAFDLKQKMKNSIDSEVDKDPFPPIGSS-SSMRHGDKFVKKKHVPLKP 59

Query: 60  FSSVLRPSVEFPTLTEENECDYKGKHGHKAI---------EQHSRDLALKKLKALHSWAD 110
           FSSVL P+V FP L E         +G KA+          Q   +   K LK  H WA+
Sbjct: 60  FSSVLVPNVNFPPLKE-------AGNGQKAVLGSDSCGTTAQEDVNGPTKMLKEQHPWAE 112

Query: 111 NSLIEDLMEAVDNDIKRASNLLEGMVSSSGSAEENKETKIAESSSTIDESPCYRKGGEIC 170
           NSLI+D++ AV+N++ +A  LLE M S+    E    +         D+     K GE  
Sbjct: 113 NSLIDDILAAVNNNVDKAVALLETMASAVNFEEHKVLSNPHPRPLISDDVTRVVKTGESL 172

Query: 171 FLEKALDLSNLSTTTGDGVNDNFIESVDVRASSVINVSDKDDGMKSIMERLSSLPIEPEW 230
            LE   D     +     + DN  +  +  A S    SD       +M+ L+S+P+EPEW
Sbjct: 173 ALEMVKDDILFHSNIVGQLQDNNKDLENRYAFSGQKFSD-------VMDLLNSVPVEPEW 225

Query: 231 EEDDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKA 290
           EEDD+YL HRKDA+K MRSAS+HSKAA NA+L+G+HFSAQQHS +AR+EW  A++LNS+A
Sbjct: 226 EEDDIYLSHRKDALKTMRSASRHSKAAANAFLKGEHFSAQQHSARAREEWHNADKLNSEA 285

Query: 291 AKEILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMV 350
           A +IL IRNS+ND+ +LDLHGLHAAEAVQALQE L++IE Q   + S++P     KNG  
Sbjct: 286 ATKILSIRNSDNDISRLDLHGLHAAEAVQALQEHLRRIESQG-FSKSLAPSNNAKKNG-D 343

Query: 351 CTASLESFGCMDMEVVDKQRSSLRQIQKSLQVITGIGNHSRGQAALPTAVKNFLSESGYR 410
             ++L S   MD E +DKQ   LR    ++ VITG+GNHSRGQAALPTAV++FLSE+ YR
Sbjct: 344 AHSTLGSLNLMDWENLDKQ-VPLRLRSLAVHVITGVGNHSRGQAALPTAVRSFLSENRYR 402

Query: 411 FDEARPGVITVRPKFRQ 427
           F+E RPGVITV PKFRQ
Sbjct: 403 FEEMRPGVITVWPKFRQ 419

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807260|ref|NP_001242104.1| uncharacterized protein LOC100809786 [Glycine max] gi|255639453|gb|ACU20021.1| unknown [Glycine max]

 Score =  350 bits (899), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 205/436 (47%), Positives = 275/436 (63%), Gaps = 30/436 (6%)

Query: 1   MSLTRVKSPGWAAFDLKQRQKQGLAPETDKDSYPPISSTLTSLRNCENVSRNTDVLVKPF 60
           MS  R +S GW AFDLKQR+      E D+D +P I +T       + +     V  KPF
Sbjct: 12  MSWARGQSSGWTAFDLKQRKNNNFESEDDEDPFPAIGTT-------DPMVGKNHVPAKPF 64

Query: 61  SSVLRPSVEFPTLTEENEC-------DYKGKHGHKAIEQHSRDLALKKLKALHSWADNSL 113
           SSVL P+  FP   E           D  GK+   A  Q   +LA+KKL+  H WA++SL
Sbjct: 65  SSVLLPTRNFPPFKEGGNSKKAMVGSDSDGKYC-GATAQEDVNLAIKKLREQHLWAEHSL 123

Query: 114 IEDLMEAVDNDIKRASNLLEGMVSSSGSAEENKETKIAES--SSTIDESPCYRKGGEICF 171
           I+D+  AV+N+I +A+ LLE M      A   +E+K++ +  S+T D++PC  K  +   
Sbjct: 124 IDDIFSAVNNNIDKATALLETM----DPAANFEESKVSSNPRSTTSDDTPCKDKTDDSLT 179

Query: 172 LEKALDLSNLSTTTGDGVNDNFIESVDVRASSVINVSDKDDGMKSIMERLSSLPIEPEWE 231
            EK  D     +   D + DN  +  D  A S   +SD D  ++  M+ L+S+P+EPEWE
Sbjct: 180 SEKVEDDIPFDSNLVDNLQDNDKDLEDRNAPSGQKLSDVD-YLRCKMKLLNSIPVEPEWE 238

Query: 232 EDDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKAA 291
           +DD+Y+ +RKDA++ MRSAS+HS+AA++A+LRGDHFSAQ HS+KAR E   AE LNS AA
Sbjct: 239 DDDIYISNRKDALRTMRSASRHSRAASSAFLRGDHFSAQHHSMKARAERHTAEELNSDAA 298

Query: 292 KEILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVC 351
           K+IL +RN+END+WKLDLHGLHA EA+QALQE L +IE Q     S +   VK +NG+  
Sbjct: 299 KKILSVRNNENDIWKLDLHGLHATEAIQALQEHLYRIESQGFSKSSATSNGVK-ENGL-G 356

Query: 352 TASLESFGCMDMEVVDKQRSSLRQIQKSLQVITGIGNHSRGQAALPTAVKNFLSESGYRF 411
            ++L S   MD E      + LR    +L VITG+GNHSRGQAALPTAV++FL+E+ YRF
Sbjct: 357 HSTLGSLNFMDRE------APLRLRPLALHVITGVGNHSRGQAALPTAVRSFLNENRYRF 410

Query: 412 DEARPGVITVRPKFRQ 427
           +E RPGVITV PKFRQ
Sbjct: 411 EEMRPGVITVWPKFRQ 426

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520321|ref|XP_004167182.1| PREDICTED: uncharacterized protein LOC101231408 [Cucumis sativus]

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 200/435 (45%), Positives = 266/435 (61%), Gaps = 19/435 (4%)

Query: 7   KSPGWAAFDLKQRQKQGLAPETDKDSYPPISSTLTSLRNCENVSRNTDVLVKPFSSVLRP 66
           KSPGW  F+LKQ  K GL  E D +++PP+ +  +SL   EN+        + F+S   P
Sbjct: 179 KSPGWEEFNLKQHSK-GLQDEMDLEAFPPMLTNRSSLPPYENLHGVYGRSGRSFASEPLP 237

Query: 67  SVEFPTLTEENEC------DYKGKHGHKAIEQHSRDLALKKLKALHSWADNSLIEDLMEA 120
           SV++ T  E          D   + G K +E+++  LA  KLK +HSWAD SLI D+M+A
Sbjct: 238 SVDYLTSPENYGAKNTIADDSSIQSGKKVVEENTDVLAFWKLKEIHSWADFSLIVDIMDA 297

Query: 121 VDNDIKRASNLLEGMVSSSGSAEENKETKIAESSSTIDESPCYRKGGEICFLEKALDLSN 180
           V+N+   AS LL+ MVSS      N+ + +   S+  ++  C          E+ ++   
Sbjct: 298 VNNNFDEASTLLKTMVSSDNFEINNEISTLGLHSA--NDLLCNGNNDVSIASERTINAPI 355

Query: 181 LSTTTG--DGVNDNFIESVDVRASSVIN-----VSDKDDGMKSIMERLS-SLPIEPEWEE 232
           LS+T     G++ N   S +       N      S  + G   I    S S+PIEPEWEE
Sbjct: 356 LSSTVKAVQGIHQNNNTSREDYTKLFANDYFERNSFHNTGNSKIALGCSKSVPIEPEWEE 415

Query: 233 DDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKAAK 292
           DD+YL HRKDA+ MMRSASQHS+AA NAY R DH SA+ HS +A ++WL A+ LN KAA 
Sbjct: 416 DDIYLSHRKDAIAMMRSASQHSRAATNAYRRKDHASAKYHSSRAEEQWLAAKMLNDKAAN 475

Query: 293 EILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCT 352
           EIL  RNS+N +WKLDLHGLHAAEAVQAL + L KIE Q   N S+SPKK + K G    
Sbjct: 476 EILQTRNSKNGLWKLDLHGLHAAEAVQALHDHLLKIETQNASNRSLSPKKAERK-GFQRA 534

Query: 353 ASLESFGCMDMEVVDKQRSSLRQIQKSLQVITGIGNHSRGQAALPTAVKNFLSESGYRFD 412
           +SLE   CM+ + +DK+  S R    SL+VITGIG HS+G+AALP AV +FL+E+GYRF+
Sbjct: 535 SSLEYLSCMESK-LDKESPSSRHRPTSLEVITGIGKHSKGEAALPKAVASFLTENGYRFE 593

Query: 413 EARPGVITVRPKFRQ 427
           + RPG I+VRPKFR+
Sbjct: 594 QTRPGTISVRPKFRR 608

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	428
TAIR|locus:2171676	435	AT5G23520 [Arabidopsis thalian	0.978	0.963	0.506	7.9e-101
SGD|S000006120	240	YPL199C "Putative protein of u	0.294	0.525	0.296	2e-06
DICTYBASE|DDB_G0287897	606	DDB_G0287897 "CCCH-type zinc f	0.233	0.165	0.281	2.4e-05
CGD|CAL0006270	256	orf19.2246 [Candida albicans (	0.273	0.457	0.288	2.8e-05
UNIPROTKB|Q59Z54	256	CaO19.2246 "Putative uncharact	0.273	0.457	0.288	2.8e-05
DICTYBASE|DDB_G0288821	316	DDB_G0288821 "K homology (KH),	0.348	0.471	0.267	2.8e-05
DICTYBASE|DDB_G0286103	159	DDB_G0286103 "small MutS relat	0.128	0.345	0.339	8.7e-05
POMBASE|SPAC11H11.03c	206	SPAC11H11.03c "SMR and DUF1771	0.156	0.325	0.383	0.00015
DICTYBASE|DDB_G0268232	1025	DDB_G0268232 "ubiquitin system	0.210	0.087	0.296	0.00028
RGD|1565738	1677	N4bp2 "NEDD4 binding protein 2	0.254	0.064	0.289	0.00029

TAIR|locus:2171676 AT5G23520 [Arabidopsis thaliana (taxid:3702)]

 Score = 1000 (357.1 bits), Expect = 7.9e-101, P = 7.9e-101
 Identities = 223/440 (50%), Positives = 296/440 (67%)

Query:     1 MSLTRVKSPGWAAFDLKQRQKQGLAPETDKDSYPPISSTLTSLRNCEN-VSRNTDVLVKP 59
             MS  + KS GW AFDLKQRQKQGL  E + D +PP+S+++ +       + RN +   K 
Sbjct:     1 MSWMKGKSSGWTAFDLKQRQKQGLESEVEGDPFPPVSTSVNASFGVRGRLRRNHEPSEKS 60

Query:    60 FSSVLRPSVEFPTLTEENECDYKGKHG---HK----AIEQHSRDLALKKLKALHSWADNS 112
             FSSVL P   FP LTE  +C  + + G    K    ++  +S DLA  KLK ++SWAD++
Sbjct:    61 FSSVLLPPSRFPALTENKDCGNQERGGCCRRKPDTLSLPVNSHDLAFTKLKEMNSWADDN 120

Query:   113 LIEDLMEAVDNDIKRASNLLEGMVSSSGSAEENKETKIAESSSTIDESPCYRKGGEICFL 172
             LI D++ + ++D + A   L+GMVSS G  +E   +KI   SS    S  YR   +   +
Sbjct:   121 LIRDVLLSTEDDFEMALAFLKGMVSS-GKEDEEPTSKIEGYSSDNRRSE-YRTFEKT--V 176

Query:   173 EKALDLSNLSTTTGDGVNDNFIESVDVRASSVINVSDK----DD--GMKSIMERLSSLPI 226
               ++ ++  ST    G  D  +E+ D  +S ++N SD     DD   + SI++RL S+PI
Sbjct:   177 TSSVKMAARSTFEDAGKYD--LENSD-GSSFLVNASDNEKFPDDISELDSIIQRLQSIPI 233

Query:   227 EPEWEEDDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERL 286
             EPEWEEDD+YL HRKDA+K+MRSAS HS+AA NA+ R DH SA+QHS KAR++WL AE+L
Sbjct:   234 EPEWEEDDLYLSHRKDALKVMRSASNHSRAAQNAFQRYDHASAKQHSDKAREDWLAAEKL 293

Query:   287 NSKAAKEILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSK 346
             N++AAK+I+GI N +ND+WKLDLHGLHA EAVQALQERLQ IE    +N SVSP + +SK
Sbjct:   294 NAEAAKKIIGITNKDNDIWKLDLHGLHATEAVQALQERLQMIEGHFTVNRSVSPNRGRSK 353

Query:   347 NGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVITGIGNHSRGQAALPTAVKNFLSE 406
             N  + +AS E FG +D E +  QR+S R+++ SLQVITGIG HSRGQA+LP AVK F  +
Sbjct:   354 NAALRSASQEPFGRLDEEGMHCQRTSSRELRNSLQVITGIGKHSRGQASLPLAVKTFFED 413

Query:   407 SGYRFDEARPGVITVRPKFR 426
             + YRFDE RPGVITVRPKFR
Sbjct:   414 NRYRFDETRPGVITVRPKFR 433

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

SGD|S000006120 YPL199C "Putative protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 134 (52.2 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 38/128 (29%), Positives = 67/128 (52%)

Query:   233 DDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKAAK 292
             D+ Y   R+ A +  +   Q S  +  AY +GD   A + S K++ +   AE  N +AA+
Sbjct:    23 DEEYQRLRRLADEAYKKRDQLSHESQTAYQQGDKKLAHELSEKSKAQLKTAEDFNMQAAE 82

Query:   293 EILGIRNSENDMWKLDLHGLHAAEAVQALQERLQ-KIEMQRPMNCSVSPKKVKSKNGMV- 350
              +    N+++   ++DLHGL+  EA+  LQ+R++  I+   P    +  K + S+NG+  
Sbjct:    83 YVFVENNADSSSNEIDLHGLYVKEALFILQKRIKFAIDHNEPQLNVIVGKGLHSQNGIAK 142

Query:   351 CTASLESF 358
                S+E F
Sbjct:   143 LKPSIEEF 150

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0287897 DDB_G0287897 "CCCH-type zinc finger-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 113 (44.8 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
 Identities = 31/110 (28%), Positives = 56/110 (50%)

Query:   229 EWEEDDV-----YLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIA 283
             EW E  V     Y  HR+ A+   R  ++    A  A+  G   ++++++L+A++   + 
Sbjct:   451 EWVETGVEVSLLYKQHRESAILHARERNRLFNQAARAF--GSAVTSREYALEAQQHDALM 508

Query:   284 ERLNSKAAKEILGIRNSENDMWK---LDLHGLHAAEAVQALQERLQKIEM 330
             +  N KA   I   RN + D      LD HGLH +EA++ L++ L ++ +
Sbjct:   509 KEYNRKARDIIFNTRNKDYDPVNNNVLDFHGLHVSEALEILEDHLDRLPL 558

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

CGD|CAL0006270 orf19.2246 [Candida albicans (taxid:5476)]

 Score = 125 (49.1 bits), Expect = 2.8e-05, P = 2.8e-05
 Identities = 34/118 (28%), Positives = 60/118 (50%)

Query:   233 DDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKAAK 292
             D  Y   R +A ++ +   Q S+ + NAY +GD   A + S ++++    AE  N KAA+
Sbjct:    25 DSEYKRLRSEADRLFQKRQQLSQQSQNAYKQGDGQKAHELSEESKRVLAQAEECNRKAAE 84

Query:   293 EILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKK-VKSKNGM 349
              +    N ++   ++DLHGL+  EA   L+ R+        ++ +V   K + S NG+
Sbjct:    85 YVFRENNEDSGPDEIDLHGLYVKEAEWILERRIYYAVKTNQLHLNVIVGKGLHSANGV 142

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q59Z54 CaO19.2246 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 125 (49.1 bits), Expect = 2.8e-05, P = 2.8e-05
 Identities = 34/118 (28%), Positives = 60/118 (50%)

Query:   233 DDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKAAK 292
             D  Y   R +A ++ +   Q S+ + NAY +GD   A + S ++++    AE  N KAA+
Sbjct:    25 DSEYKRLRSEADRLFQKRQQLSQQSQNAYKQGDGQKAHELSEESKRVLAQAEECNRKAAE 84

Query:   293 EILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKK-VKSKNGM 349
              +    N ++   ++DLHGL+  EA   L+ R+        ++ +V   K + S NG+
Sbjct:    85 YVFRENNEDSGPDEIDLHGLYVKEAEWILERRIYYAVKTNQLHLNVIVGKGLHSANGV 142

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0288821 DDB_G0288821 "K homology (KH), type 1 domain containing-protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 127 (49.8 bits), Expect = 2.8e-05, P = 2.8e-05
 Identities = 42/157 (26%), Positives = 77/157 (49%)

Query:   180 NLSTTTGDGVNDNFIESVDVRASSVINVSDKDDGMKSIMERL-SSLPIEPEWEEDDVYLV 238
             N  T T  G +D+  +    RA  +IN    +   +S  ++  S +  + E E      +
Sbjct:   116 NGETITVRGSSDSDCQ----RAIDMINKIKGEHKTQSQKDKEHSDMKDDHEKEHQRTEEL 171

Query:   239 HRKDAMKMMRSASQHS---KAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKAAKEIL 295
             ++K   K+ R A +     K A+ A+  GD     Q   +A+ +    E+ + +A+K + 
Sbjct:   172 YKKGQEKVDRIAKERDDLHKQADKAFESGDKSLGHQLREQAKAKTQELEKASKEASKSVF 231

Query:   296 GIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQR 332
               +N++ND + +DLHGLHA +A++ L E L  I+  +
Sbjct:   232 IAKNAKNDKFTVDLHGLHANDAIELLVEHLDGIKSNK 268

GO:0003723 "RNA binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0286103 DDB_G0286103 "small MutS related (smr) family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 79 (32.9 bits), Expect = 8.7e-05, Sum P(2) = 8.7e-05
 Identities = 19/56 (33%), Positives = 32/56 (57%)

Query:   363 MEVVDKQRSSLRQIQKS-LQVITGIGNHSRGQAALPTAVKNFLSESGYRFDEARPG 417
             +E+ ++    +++  K  L VITG G+HS G+A +   V +FL E+   F+E   G
Sbjct:    89 LELKNRINQLIKEKYKGKLLVITGRGSHSVGEAKIKPRVNSFLKENSLLFEENSKG 144

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

POMBASE|SPAC11H11.03c SPAC11H11.03c "SMR and DUF1771 domain protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 102 (41.0 bits), Expect = 0.00015, Sum P(2) = 0.00015
 Identities = 28/73 (38%), Positives = 44/73 (60%)

Query:   257 ANNAYLRGDHFSAQQHSLKARKEWLIAERL---NSKAAKEILGIRNSENDMWKLDLHGLH 313
             A +AY  G+   A+ H L    + L  ER+   N +AA  I   +NS+ +  ++DLHGL+
Sbjct:    25 AQHAYSAGN--KAKAHELSQEGK-LCGERMENYNRQAASAIYLYKNSQCNPDEIDLHGLY 81

Query:   314 AAEAVQALQERLQ 326
               EAVQA+Q+R++
Sbjct:    82 IDEAVQAVQQRIE 94

GO:0004519 "endonuclease activity" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006281 "DNA repair" evidence=ISM

GO:0046404 "ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity" evidence=ISS

DICTYBASE|DDB_G0268232 DDB_G0268232 "ubiquitin system component Cue domain containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 104 (41.7 bits), Expect = 0.00028, Sum P(3) = 0.00028
 Identities = 27/91 (29%), Positives = 48/91 (52%)

Query:   236 YLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKAAKEIL 295
             Y  HR +A + ++  +   K+A  AY++     A+  S + ++   +A+  N  A+ +I 
Sbjct:   875 YTDHRMEAERYIKMRNACFKSAAEAYMKNKPADARSLSEQGKRYDELAKEANLCASNQIF 934

Query:   296 GIRNSE-NDMWKLDLHGLHAAEAVQALQERL 325
                NS   D  ++DLHGLH  EA+  +Q+ L
Sbjct:   935 MECNSRIGDTLRIDLHGLHVNEALDMVQQAL 965

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

RGD|1565738 N4bp2 "NEDD4 binding protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 113 (44.8 bits), Expect = 0.00029, Sum P(3) = 0.00029
 Identities = 33/114 (28%), Positives = 57/114 (50%)

Query:   312 LHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRS 371
             LH  +  +A    L  +E+   +N S+ P+ V   +G+    ++E    +  +  ++ + 
Sbjct:  1568 LHEQKMREA--NHLAAVEIFEKVNASLLPQNVLDLHGLHVDEAIEHLTAVLQQKTEEFKQ 1625

Query:   372 SLRQIQKSLQVITGIGNHSRGQAA-LPTAVKNFLSESGYRFDEARPGVITVRPK 424
             S  +    L VITG GNHS+G  A +  AV  +L+   +RF E +PG + V  K
Sbjct:  1626 SGGK--PYLSVITGRGNHSQGGVARIKPAVIKYLTSHSFRFSEIKPGCLKVMLK 1677

GO:0004519 "endonuclease activity" evidence=IEA;ISO

GO:0005524 "ATP binding" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0046404 "ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00003630001 SubName- Full=Chromosome undetermined scaffold_147, whole genome shotgun sequence; (435 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	428
smart00463	80	smart00463, SMR, Small MutS-related domain	4e-09
pfam08590	66	pfam08590, DUF1771, Domain of unknown function (DU	3e-06
pfam01713	80	pfam01713, Smr, Smr domain	1e-05

>gnl|CDD|214676 smart00463, SMR, Small MutS-related domain

 Score = 52.7 bits (127), Expect = 4e-09
 Identities = 30/120 (25%), Positives = 43/120 (35%), Gaps = 45/120 (37%)

Query: 304 MWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDM 363
            W LDLHGL   EA+ AL + L                                      
Sbjct: 1   KWSLDLHGLTVEEALTALDKFLNNA----------------------------------- 25

Query: 364 EVVDKQRSSLRQIQKSLQVITGIGNHSR-GQAALPTAVKNFLSESGYRFDEAR-PGVITV 421
                    L+ +++ L +ITG G HS  G++ +  A+K  L    +RF E    GV+ V
Sbjct: 26  --------RLKGLEQKLVIITGKGKHSLGGKSGVKPALKEHLRVESFRFAEEGNSGVLVV 77

Length = 80

>gnl|CDD|117164 pfam08590, DUF1771, Domain of unknown function (DUF1771)

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 20/65 (30%), Positives = 33/65 (50%)

Query: 236 YLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKAAKEIL 295
           Y   R +A K  +  ++  + A  AY RGD  +A++ S + +K    AE  N +AA+ I 
Sbjct: 2   YQRLRAEADKHGQKRNELFQKAAEAYKRGDKAAAKELSEEGKKHGEKAEEANRQAAEAIF 61

Query: 296 GIRNS 300
              N+
Sbjct: 62  RENNA 66

This domain is always found adjacent to pfam01713. Length = 66

>gnl|CDD|216658 pfam01713, Smr, Smr domain

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 25/125 (20%), Positives = 40/125 (32%), Gaps = 52/125 (41%)

Query: 307 LDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVV 366
           LDLHGL   EA+ AL++ L +                                     + 
Sbjct: 1   LDLHGLTVEEALDALEDFLDE--------------------------------AWAKGI- 27

Query: 367 DKQRSSLRQIQKSLQVITGIGNHSRGQAALPTAVKNFLSE----SGYRFDEAR---PGVI 419
                      + + +I G G+HS+G   L +AV+ +L +      +     R    G  
Sbjct: 28  -----------RCVLIIHGKGSHSKG-GVLKSAVREWLRQHPEVLAFHSAPPRHGGSGAT 75

Query: 420 TVRPK 424
            V  K
Sbjct: 76  YVLLK 80

This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2. This domain exhibits nicking endonuclease activity that might have a role in mismatch repair or genetic recombination. It shows no significant double strand cleavage or exonuclease activity. The full-length human NEDD4-binding protein 2 also has the polynucleotide kinase activity. Length = 80

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	428
smart00463	80	SMR Small MutS-related domain.	99.62
PF01713	83	Smr: Smr domain; InterPro: IPR002625 This family i	99.58
PF08590	66	DUF1771: Domain of unknown function (DUF1771); Int	99.49
KOG2401	448	consensus Predicted MutS-related protein involved	98.65
COG2840	184	Uncharacterized protein conserved in bacteria [Fun	98.55
PRK04946	181	hypothetical protein; Provisional	98.2
PRK00409	782	recombination and DNA strand exchange inhibitor pr	97.63
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	97.42
PF02845	42	CUE: CUE domain; InterPro: IPR003892 This domain m	96.38
smart00546	43	CUE Domain that may be involved in binding ubiquit	95.51
PF00627	37	UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma	91.07
COG1193	753	Mismatch repair ATPase (MutS family) [DNA replicat	82.78
cd00194	38	UBA Ubiquitin Associated domain. The UBA domain is	81.3
smart00165	37	UBA Ubiquitin associated domain. Present in Rad23,	80.72

>smart00463 SMR Small MutS-related domain

Probab=99.62  E-value=1.1e-15  Score=123.02  Aligned_cols=77  Identities=39%  Similarity=0.722  Sum_probs=67.7

Q ss_pred             CcccccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCCcccccccccccccchhhhhhhhhhhhccCceEEEE
Q 014250          304 MWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVI  383 (428)
Q Consensus       304 ~~~LDLHGLhv~EAv~iL~e~L~~i~~q~~~~Rs~s~~~~k~k~G~~~s~~~~~f~~~~~e~~~~q~~~~r~~~~~L~VI  383 (428)
                      .|+||||||++.||+.+|+.+|+.++..                |.                           ...+.||
T Consensus         1 ~~~lDLHG~~~~eA~~~l~~~l~~~~~~----------------~~---------------------------~~~~~II   37 (80)
T smart00463        1 KWSLDLHGLTVEEALTALDKFLNNARLK----------------GL---------------------------EQKLVII   37 (80)
T ss_pred             CCeEEcCCCCHHHHHHHHHHHHHHHHHc----------------CC---------------------------CceEEEE
Confidence            4789999999999999999999998742                10                           0379999


Q ss_pred             EccCCCCC-CCCCchHHHHHHHHHcCCeeee-CCCeEEEEee
Q 014250          384 TGIGNHSR-GQAALPTAVKNFLSESGYRFDE-ARPGVITVRP  423 (428)
Q Consensus       384 TGrG~HS~-G~arLkpAV~~fL~e~Gyrf~E-~~pGvI~V~~  423 (428)
                      ||+|+||. |.++|+++|.++|...+|+|.+ .++|++.|..
T Consensus        38 ~G~G~~s~~g~~~i~~~l~~~l~~~~~~~~~~~~~G~~~v~l   79 (80)
T smart00463       38 TGKGKHSLGGKSGVKPALKEHLRVESFRFAEEGNSGVLVVKL   79 (80)
T ss_pred             EcccCCCccchhhHHHHHHhchhhcccccCCCCCCeEEEEEe
Confidence            99999998 5699999999999999999987 7999999975

>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein

Probab=99.58  E-value=1.9e-15  Score=122.47  Aligned_cols=72  Identities=44%  Similarity=0.767  Sum_probs=57.8

Q ss_pred             cccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCCcccccccccccccchhhhhhhhhhhhccCceEEEEEcc
Q 014250          307 LDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVITGI  386 (428)
Q Consensus       307 LDLHGLhv~EAv~iL~e~L~~i~~q~~~~Rs~s~~~~k~k~G~~~s~~~~~f~~~~~e~~~~q~~~~r~~~~~L~VITGr  386 (428)
                      ||||||+++||+.+|+++|..++.+                |                            ...+.||||+
T Consensus         1 iDLHG~~~~eA~~~l~~~l~~~~~~----------------~----------------------------~~~~~II~G~   36 (83)
T PF01713_consen    1 IDLHGLTVEEALRALEEFLDEARQR----------------G----------------------------IRELRIITGK   36 (83)
T ss_dssp             EE-TTS-HHHHHHHHHHHHHHHHHT----------------T----------------------------HSEEEEE--S
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHc----------------C----------------------------CCEEEEEecc
Confidence            7999999999999999999998742                1                            1479999999


Q ss_pred             CCCCCCCCCchHHHHHHHHHcCCeeeeC-----------CCeEEEEeee
Q 014250          387 GNHSRGQAALPTAVKNFLSESGYRFDEA-----------RPGVITVRPK  424 (428)
Q Consensus       387 G~HS~G~arLkpAV~~fL~e~Gyrf~E~-----------~pGvI~V~~k  424 (428)
                      |+||.++. |+++|..||.+ ++.|.+.           ++|++.|..|
T Consensus        37 G~hS~~g~-Lk~~V~~~L~~-~~~~~~v~~~~~~~~~~g~~G~~~V~lk   83 (83)
T PF01713_consen   37 GNHSKGGV-LKRAVRRWLEE-GYQYEEVLAYRDAEPEDGNSGATIVYLK   83 (83)
T ss_dssp             TCTCCTSH-HHHHHHHHHHH-THCCTTEEEEEE--CCCTGGGEEEEEE-
T ss_pred             CCCCCCCc-HHHHHHHHHHh-hhccchhheeeecCCCCCCCeEEEEEeC
Confidence            99999776 99999999999 8777542           9999999876

It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.

>PF08590 DUF1771: Domain of unknown function (DUF1771); InterPro: IPR013899 This domain is almost always found adjacent to IPR002625 from INTERPRO

Probab=99.49  E-value=6.1e-15  Score=116.38  Aligned_cols=66  Identities=27%  Similarity=0.295  Sum_probs=15.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 014250          235 VYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKAAKEILGIRNS  300 (428)
Q Consensus       235 ~Y~~~RkeA~k~~r~R~~~~~~A~~Af~rGd~~~Ak~lS~~Ar~~~~~aeean~~AA~~If~~rNs  300 (428)
                      +|..+|.+|.++++.|++||++|++||++||+..|++||++|+.+..+|+++|.+||+.||..+|.
T Consensus         1 ~Y~~~R~~A~~~~~~r~~~~~~A~~Ay~~Gd~~~A~~ls~~gk~~~~~~~~~n~~AA~~I~~~~N~   66 (66)
T PF08590_consen    1 DYEKLRAEADEHARKRNECFQKAAEAYRRGDKAAAKELSEEGKQHNEKMKEANRQAAEAIFEERNA   66 (66)
T ss_dssp             --------------------------------------------------SHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            589999999999999999999999999999999999999999999999999999999999999983

; PDB: 2VKC_A.

>KOG2401 consensus Predicted MutS-related protein involved in mismatch repair [Replication, recombination and repair]

Probab=98.65  E-value=1.3e-08  Score=106.28  Aligned_cols=120  Identities=15%  Similarity=0.080  Sum_probs=90.2

Q ss_pred             CCCCCCCCCCchhhcHHHHhhcCCCCCCCCCCCCCCCccccCCc-cccccccCCCCccCCcccccccCCCCCCCcccccc
Q 014250            1 MSLTRVKSPGWAAFDLKQRQKQGLAPETDKDSYPPISSTLTSLR-NCENVSRNTDVLVKPFSSVLRPSVEFPTLTEENEC   79 (428)
Q Consensus         1 m~~~~~~~~gw~afd~~~r~~~~~~~~~~~~~fp~~~~~~~~~~-~~~~~~~~~~~~~~~f~sv~~p~~~f~~~~~~~~~   79 (428)
                      |||+.....+|..|.+..+++...+.....|++|++.+.-.... .|.-+-.+..+....+++++.++..+++..+..+|
T Consensus        14 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~   93 (448)
T KOG2401|consen   14 MSLTLSLAAFSFSFKLVDLKAASEESSDEVDLGPPELSEMATSTSSADRLQYTIELLEPSPSSVSFESLRARASDENVDR   93 (448)
T ss_pred             ccchhccchhhhhhhhHhhhhcccccccccccCCCcchhhccccchhhhhcccccccCCCcccccccccccchhhhcccc
Confidence            78999999999999999999999999999999999998854333 24334456667888999999999999999999999


Q ss_pred             cccCC------CC-CccccccchHHHHHHHHHhccccchhHHHHHHHH
Q 014250           80 DYKGK------HG-HKAIEQHSRDLALKKLKALHSWADNSLIEDLMEA  120 (428)
Q Consensus        80 ~~~~~------~~-~~~~~~~~~~~~~~~L~~~~~wad~~li~dv~~a  120 (428)
                      ++.+.      -+ .-....+.+..++.....+..|.+...|-+..-.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (448)
T KOG2401|consen   94 GNQERILDRSRNQVAGKLKVSFVEKKLNEEEPQKEINPDGRILPEDPS  141 (448)
T ss_pred             HHHHhhcccccccccccccccccccccCccccccccCCcccccccccc
Confidence            99881      11 1122223355666667777777777666544433

>COG2840 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.55  E-value=2.2e-07  Score=87.66  Aligned_cols=80  Identities=30%  Similarity=0.446  Sum_probs=64.3

Q ss_pred             CCcccccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCCcccccccccccccchhhhhhhhhhhhccCceEEE
Q 014250          303 DMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQV  382 (428)
Q Consensus       303 ~~~~LDLHGLhv~EAv~iL~e~L~~i~~q~~~~Rs~s~~~~k~k~G~~~s~~~~~f~~~~~e~~~~q~~~~r~~~~~L~V  382 (428)
                      .+..||||||++.||-+.|-.+|.....+                |                            ...+.|
T Consensus        95 ~e~~LDLHG~tq~eAr~~L~~Fi~~a~~~----------------~----------------------------~rcv~V  130 (184)
T COG2840          95 PEARLDLHGLTQEEARQELGAFIARARAE----------------G----------------------------LRCVLV  130 (184)
T ss_pred             cceeeeccCCCHHHHHHHHHHHHHHHHHh----------------C----------------------------CcEEEE
Confidence            46789999999999999999999986532                2                            147999


Q ss_pred             EEccCCCCCCC-CCchHHHHHHHHHcCC--eeee-----CCCeEEEEeeeccC
Q 014250          383 ITGIGNHSRGQ-AALPTAVKNFLSESGY--RFDE-----ARPGVITVRPKFRQ  427 (428)
Q Consensus       383 ITGrG~HS~G~-arLkpAV~~fL~e~Gy--rf~E-----~~pGvI~V~~k~r~  427 (428)
                      |||.|. |.|. +.||.+|..||.+.--  .|.+     -+.|.|+|..+++.
T Consensus       131 ihGkG~-s~g~~~vLK~~Vp~WL~qhp~V~a~~~a~~~hGG~GAlyVlL~~~~  182 (184)
T COG2840         131 IHGKGR-SKGSKPVLKSQVPRWLTQHPDVLAFHQAPRRHGGDGALYVLLRRRV  182 (184)
T ss_pred             EeCCCc-CCCCchhHHHHHHHHHHhChHHHhhcccchhcCCceEEEEEEeccc
Confidence            999999 9985 9999999999999432  2433     37788888887764

>PRK04946 hypothetical protein; Provisional

Probab=98.20  E-value=4e-06  Score=78.91  Aligned_cols=75  Identities=21%  Similarity=0.197  Sum_probs=60.9

Q ss_pred             CCcccccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCCcccccccccccccchhhhhhhhhhhhccCceEEE
Q 014250          303 DMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQV  382 (428)
Q Consensus       303 ~~~~LDLHGLhv~EAv~iL~e~L~~i~~q~~~~Rs~s~~~~k~k~G~~~s~~~~~f~~~~~e~~~~q~~~~r~~~~~L~V  382 (428)
                      -...|||||+++.||.+.|..+|.....                .|                            ...+.|
T Consensus        94 ~~~~LDLhG~~~eeA~~~L~~fl~~a~~----------------~g----------------------------~r~v~I  129 (181)
T PRK04946         94 PELFLDLHGLTQLQAKQELGALIAACRK----------------EH----------------------------VFCACV  129 (181)
T ss_pred             CceEEECCCCCHHHHHHHHHHHHHHHHH----------------cC----------------------------CCEEEE
Confidence            4578999999999999999999997542                12                            247999


Q ss_pred             EEccCCCCCCCCCchHHHHHHHHHcCC--eee-----eCCCeEEEEeeecc
Q 014250          383 ITGIGNHSRGQAALPTAVKNFLSESGY--RFD-----EARPGVITVRPKFR  426 (428)
Q Consensus       383 ITGrG~HS~G~arLkpAV~~fL~e~Gy--rf~-----E~~pGvI~V~~k~r  426 (428)
                      |+|+|.     +.||.+|..||.+..+  .|.     +-+.|.+.|..|..
T Consensus       130 IHGkG~-----gvLk~~V~~wL~q~~~V~af~~A~~~~GG~GA~~VlLk~~  175 (181)
T PRK04946        130 MHGHGK-----HILKQQTPLWLAQHPDVMAFHQAPKEWGGDAALLVLIEIE  175 (181)
T ss_pred             EcCCCH-----hHHHHHHHHHHcCCchhheeeccCcccCCceEEEEEEecC
Confidence            999996     6999999999998765  353     25789999988764

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=97.63  E-value=9.8e-05  Score=82.67  Aligned_cols=71  Identities=31%  Similarity=0.470  Sum_probs=57.6

Q ss_pred             cccccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCCcccccccccccccchhhhhhhhhhhhccCceEEEEE
Q 014250          305 WKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVIT  384 (428)
Q Consensus       305 ~~LDLHGLhv~EAv~iL~e~L~~i~~q~~~~Rs~s~~~~k~k~G~~~s~~~~~f~~~~~e~~~~q~~~~r~~~~~L~VIT  384 (428)
                      ..|||||++++||+..|+.+|.....                .|                            ...+.||+
T Consensus       705 ~~lDL~G~~~eeA~~~l~~fl~~a~~----------------~g----------------------------~~~v~IIH  740 (782)
T PRK00409        705 LELDLRGMRYEEALERLDKYLDDALL----------------AG----------------------------YGEVLIIH  740 (782)
T ss_pred             ceEECCCCCHHHHHHHHHHHHHHHHH----------------cC----------------------------CCEEEEEc
Confidence            68999999999999999999997532                12                            25799999


Q ss_pred             ccCCCCCCCCCchHHHHHHHHHcCCe--e-----eeCCCeEEEEeee
Q 014250          385 GIGNHSRGQAALPTAVKNFLSESGYR--F-----DEARPGVITVRPK  424 (428)
Q Consensus       385 GrG~HS~G~arLkpAV~~fL~e~Gyr--f-----~E~~pGvI~V~~k  424 (428)
                      |+|.     ..|+.+|..||.++.+-  |     .+.+.|+..|+.|
T Consensus       741 GkGt-----G~Lr~~v~~~L~~~~~V~~f~~a~~~~GG~Gat~V~lk  782 (782)
T PRK00409        741 GKGT-----GKLRKGVQEFLKKHPSVKSFRDAPPNEGGFGVTIVELK  782 (782)
T ss_pred             CCCh-----hHHHHHHHHHHcCCCceeeeeecCcccCCCeEEEEEEC
Confidence            9986     59999999999998663  3     2357899988764

>TIGR01069 mutS2 MutS2 family protein

Probab=97.42  E-value=0.00027  Score=79.16  Aligned_cols=70  Identities=27%  Similarity=0.430  Sum_probs=57.2

Q ss_pred             cccccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCCcccccccccccccchhhhhhhhhhhhccCceEEEEE
Q 014250          305 WKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVIT  384 (428)
Q Consensus       305 ~~LDLHGLhv~EAv~iL~e~L~~i~~q~~~~Rs~s~~~~k~k~G~~~s~~~~~f~~~~~e~~~~q~~~~r~~~~~L~VIT  384 (428)
                      ..|||||+++.||+..|+.+|.....                .|                            ...++||+
T Consensus       694 ~~ldl~G~~~~eA~~~l~~~ld~a~~----------------~g----------------------------~~~v~IIH  729 (771)
T TIGR01069       694 LTLDLRGQRSEEALDRLEKFLNDALL----------------AG----------------------------YEVVLIIH  729 (771)
T ss_pred             ceEECCCCCHHHHHHHHHHHHHHHHH----------------CC----------------------------CCEEEEEc
Confidence            58999999999999999999998542                12                            24799999


Q ss_pred             ccCCCCCCCCCchHHHHHHHHHcCCe--e-----eeCCCeEEEEee
Q 014250          385 GIGNHSRGQAALPTAVKNFLSESGYR--F-----DEARPGVITVRP  423 (428)
Q Consensus       385 GrG~HS~G~arLkpAV~~fL~e~Gyr--f-----~E~~pGvI~V~~  423 (428)
                      |+|.     ..|+.+|..||.++.+-  |     .+.+.|+..|+.
T Consensus       730 GkGt-----G~Lr~~v~~~L~~~~~V~~f~~a~~~~GG~G~t~V~l  770 (771)
T TIGR01069       730 GKGS-----GKLRKGVQELLKNHPKVKSFRDAPPNDGGSGVTIVYL  770 (771)
T ss_pred             CCCh-----hHHHHHHHHHhcCCcceeeecccCcccCCceEEEEEE
Confidence            9996     57999999999998662  3     245788888875

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs)

Probab=96.38  E-value=0.0079  Score=43.53  Aligned_cols=40  Identities=23%  Similarity=0.371  Sum_probs=35.4

Q ss_pred             HHHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHHhh
Q 014250           96 DLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGM  135 (428)
Q Consensus        96 ~~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~~m  135 (428)
                      ...++.|++|||-.+.+.|+++|.+.++|++.|+..|=.|
T Consensus         2 ~~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~~   41 (42)
T PF02845_consen    2 EEMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLEM   41 (42)
T ss_dssp             HHHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence            3578999999999999999999999999999999887554

CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.

>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs)

Probab=95.51  E-value=0.028  Score=40.75  Aligned_cols=40  Identities=28%  Similarity=0.339  Sum_probs=35.5

Q ss_pred             HHHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHHhh
Q 014250           96 DLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGM  135 (428)
Q Consensus        96 ~~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~~m  135 (428)
                      ...++.|++|||-.+...|+.+|.+.++|++.|+..|-.|
T Consensus         3 ~~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~~   42 (43)
T smart00546        3 DEALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLEG   42 (43)
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence            3578999999999999999999999999999999766443

CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)

>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []

Probab=91.07  E-value=0.55  Score=33.01  Aligned_cols=34  Identities=15%  Similarity=0.271  Sum_probs=30.6

Q ss_pred             HHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHH
Q 014250           97 LALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLL  132 (428)
Q Consensus        97 ~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L  132 (428)
                      -.+++|++|  ..+.+.+..+|..++||+++|+..|
T Consensus         4 ~~v~~L~~m--Gf~~~~~~~AL~~~~~nve~A~~~L   37 (37)
T PF00627_consen    4 EKVQQLMEM--GFSREQAREALRACNGNVERAVDWL   37 (37)
T ss_dssp             HHHHHHHHH--TS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred             HHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHhC
Confidence            579999999  7889999999999999999999876

The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....

>COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]

Probab=82.78  E-value=1.9  Score=49.11  Aligned_cols=56  Identities=23%  Similarity=0.415  Sum_probs=47.2

Q ss_pred             cccccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCCcccccccccccccchhhhhhhhhhhhccCceEEEEE
Q 014250          305 WKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVIT  384 (428)
Q Consensus       305 ~~LDLHGLhv~EAv~iL~e~L~~i~~q~~~~Rs~s~~~~k~k~G~~~s~~~~~f~~~~~e~~~~q~~~~r~~~~~L~VIT  384 (428)
                      ..|||+|..+.+|+..|...+..+-.                +                            +...+.||-
T Consensus       677 ~~ldLrg~r~e~a~~~l~k~i~eail----------------~----------------------------~~~~v~iih  712 (753)
T COG1193         677 NRLDLRGERSEEALDELDKSIDEAIL----------------E----------------------------GYEKVSIIH  712 (753)
T ss_pred             ccccccccccHHHHHHHHhhhHHHHH----------------c----------------------------CCcceeEEe
Confidence            58999999999999999999998641                1                            124799999


Q ss_pred             ccCCCCCCCCCchHHHHHHHHHcCC
Q 014250          385 GIGNHSRGQAALPTAVKNFLSESGY  409 (428)
Q Consensus       385 GrG~HS~G~arLkpAV~~fL~e~Gy  409 (428)
                      |.|.     .+|+..|.+||+++..
T Consensus       713 gkGt-----G~lre~v~~~Lk~~~~  732 (753)
T COG1193         713 GKGT-----GKLREGVQEYLKKHKK  732 (753)
T ss_pred             eeec-----hHHHHHHHHHHHhCCC
Confidence            9887     8999999999998743

>cd00194 UBA Ubiquitin Associated domain

Probab=81.30  E-value=3.5  Score=28.54  Aligned_cols=34  Identities=21%  Similarity=0.270  Sum_probs=29.9

Q ss_pred             HHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHH
Q 014250           97 LALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLL  132 (428)
Q Consensus        97 ~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L  132 (428)
                      ..+++|++|  .-+.+.+..+|..+++|+++|...|
T Consensus         3 ~~v~~L~~m--Gf~~~~~~~AL~~~~~d~~~A~~~L   36 (38)
T cd00194           3 EKLEQLLEM--GFSREEARKALRATNNNVERAVEWL   36 (38)
T ss_pred             HHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHH
Confidence            478899998  4669999999999999999998876

The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.

>smart00165 UBA Ubiquitin associated domain

Probab=80.72  E-value=3.3  Score=28.61  Aligned_cols=34  Identities=15%  Similarity=0.216  Sum_probs=30.1

Q ss_pred             HHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHH
Q 014250           97 LALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLL  132 (428)
Q Consensus        97 ~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L  132 (428)
                      .++++|++|  ..+.+.+..++..+++|+++|...|
T Consensus         3 ~~v~~L~~m--Gf~~~~a~~aL~~~~~d~~~A~~~L   36 (37)
T smart00165        3 EKIDQLLEM--GFSREEALKALRAANGNVERAAEYL   36 (37)
T ss_pred             HHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHH
Confidence            468899999  5888899999999999999998876

Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	428
2vkc_A	135	Solution Structure Of The B3bp Smr Domain Length =		4e-06
2d9i_A	96	Solution Structure Of The Smr Domain Of Nedd4-Bindi		4e-04
3fau_A	82	Crystal Structure Of Human Small-Muts Related Domai		7e-04

>pdb|2D9I|A Chain A, Solution Structure Of The Smr Domain Of Nedd4-Binding Protein 2 Length = 96

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 48/119 (40%), Gaps = 46/119 (38%)
Query: 307 LDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVV 366
           LDLHGLH  EA++ L                                         M V+
Sbjct: 11  LDLHGLHVDEALEHL-----------------------------------------MRVL 29
Query: 367 DKQRSSLRQ--IQKSLQVITGIGNHSRGQAAL--PTAVKNFLSESGYRFDEARPGVITV 421
           +K+    +Q   +  L VITG GNHS+G  A   P  +K  +S S +RF E +PG + V
Sbjct: 30  EKKTEEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHS-FRFSEIKPGCLKV 87

>pdb|3FAU|A Chain A, Crystal Structure Of Human Small-Muts Related Domain Length = 82

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 48/121 (39%), Gaps = 44/121 (36%)
Query: 307 LDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVV 366
           LDLHGLH  EA++ L                                         M V+
Sbjct: 3   LDLHGLHVDEALEHL-----------------------------------------MRVL 21
Query: 367 DKQRSSLRQI--QKSLQVITGIGNHSRGQAA-LPTAVKNFLSESGYRFDEARPGVITVRP 423
           +K+    +Q   +  L VITG GNHS+G  A +  AV  +L    +RF E +PG + V  
Sbjct: 22  EKKTEEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFSEIKPGCLKVML 81
Query: 424 K 424
           K
Sbjct: 82  K 82

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	428
2vkc_A	135	NEDD4-binding protein 2; human BCL3 binding protei	2e-25
3fau_A	82	NEDD4-binding protein 2; SMR, small-MUTS related d	2e-17
2d9i_A	96	NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3	2e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} Length = 82

 Score = 76.0 bits (187), Expect = 2e-17
 Identities = 33/119 (27%), Positives = 44/119 (36%), Gaps = 40/119 (33%)

Query: 307 LDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVV 366
           LDLHGLH  EA++ L   L+K                                       
Sbjct: 3   LDLHGLHVDEALEHLMRVLEKKT------------------------------------- 25

Query: 367 DKQRSSLRQIQKSLQVITGIGNHSR-GQAALPTAVKNFLSESGYRFDEARPGVITVRPK 424
             +       +  L VITG GNHS+ G A +  AV  +L    +RF E +PG + V  K
Sbjct: 26  --EEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFSEIKPGCLKVMLK 82

>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1 Length = 96

 Score = 76.1 bits (187), Expect = 2e-17
 Identities = 32/125 (25%), Positives = 45/125 (36%), Gaps = 40/125 (32%)

Query: 299 NSENDMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESF 358
           +  +    LDLHGLH  EA++ L   L+K                               
Sbjct: 3   SGSSGQNVLDLHGLHVDEALEHLMRVLEKKT----------------------------- 33

Query: 359 GCMDMEVVDKQRSSLRQIQKSLQVITGIGNHSR-GQAALPTAVKNFLSESGYRFDEARPG 417
                     +       +  L VITG GNHS+ G A +  AV  +L    +RF E +PG
Sbjct: 34  ----------EEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFSEIKPG 83

Query: 418 VITVR 422
            + V 
Sbjct: 84  CLKVM 88

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 8e-06
 Identities = 67/420 (15%), Positives = 131/420 (31%), Gaps = 130/420 (30%)

Query: 6   VKSPG-WAAFDLKQRQKQGLAPETDKDSYPPISSTLTSLRNCENVSRNTDVLVKPFSSVL 64
           V++   W AF+L  +                    L + R      + TD L    ++ +
Sbjct: 253 VQNAKAWNAFNLSCK-------------------ILLTTRF----KQVTDFLSAATTTHI 289

Query: 65  RPSVEFPTLTEENECDYKGKHGHKAIEQHSRDLALKKLK----ALHSWADNSLIEDLMEA 120
                  TLT +           K ++   +DL  + L      L      S+I    E+
Sbjct: 290 SLDHHSMTLTPDEVKSLLL----KYLDCRPQDLPREVLTTNPRRL------SIIA---ES 336

Query: 121 VDNDIKRASNLLEGMVSSSGSAEENKETKIAESSSTIDESPCYRKGGEICFLEKALDLSN 180
           + + +    N              +K T I ESS  + E   YRK     F   ++    
Sbjct: 337 IRDGLATWDNWKH--------VNCDKLTTIIESSLNVLEPAEYRK----MFDRLSV---- 380

Query: 181 LSTTTGDGVNDNFIESVDVRASSVINV----SDKDDGMKSIMERL--SSLPIEPEWEED- 233
                       F  S  +  + ++++      K D M  ++ +L   SL +E + +E  
Sbjct: 381 ------------FPPSAHI-PTILLSLIWFDVIKSDVM-VVVNKLHKYSL-VEKQPKEST 425

Query: 234 ----DVYL-----------VHRK--DAMKMMRSASQHSKAANNA------YLRGDHFSAQ 270
                +YL           +HR   D   + ++                 ++ G H    
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI-GHHLKNI 484

Query: 271 QHSLKA---RK-----EWLIAE-RLNSKAAKEILGIRNSENDMWKLDLHGLHAAEAVQAL 321
           +H  +    R       +L  + R +S A      I N+      L  +  +  +     
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ---LKFYKPYICDNDPKY 541

Query: 322 QERLQKIE--MQRPMNCSVSPKKVKSKNGMVCTASLESFGCM-DMEVVDKQRSSLRQIQK 378
           +  +  I   + +          + SK        L     M + E + ++  + +Q+Q+
Sbjct: 542 ERLVNAILDFLPKI-----EENLICSKY-----TDLLRIALMAEDEAIFEE--AHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 43/339 (12%), Positives = 91/339 (26%), Gaps = 108/339 (31%)

Query: 85  HGHKAIEQHSRDLALKKLKALHSWADNSLIEDLMEAV--DNDIKRASNLLEGMVSSSGSA 142
           H H     H  D    + +  + + D  ++    +A   + D K   ++ + ++S     
Sbjct: 1   HHH----HHHMDFETGEHQ--YQYKD--ILSVFEDAFVDNFDCKDVQDMPKSILSK---- 48

Query: 143 EENKETKIAESSSTIDESPCYRKGGEICFLEKALDLSNLSTTTGDGVNDNFIESVDVRAS 202
           EE     I  S      S   R       L K            + +   F+E V     
Sbjct: 49  EEIDH--IIMSKD--AVSGTLRLFW--TLLSK-----------QEEMVQKFVEEVL---- 87

Query: 203 SVINVSDKDDGMKSIMERLSSLPIEPEWEEDDVYLVHRKDAMKMMRSASQHSKAANNAYL 262
                       K +M  + +   +P               M       Q  +  N+  +
Sbjct: 88  --------RINYKFLMSPIKTEQRQPS--------------MMTRMYIEQRDRLYNDNQV 125

Query: 263 RGDHFSAQQHSLKARKEWLIAERLNSKAAKEILGIRNSENDMWKLDLHGLH-------AA 315
              +  ++       ++ L             L +R ++N    + + G+        A 
Sbjct: 126 FAKYNVSRLQPYLKLRQAL-------------LELRPAKN----VLIDGVLGSGKTWVAL 168

Query: 316 EAVQALQERLQKIEMQRPMNCSV---SPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSS 372
           +            ++Q  M+  +   + K   S                   V++  +  
Sbjct: 169 DV-------CLSYKVQCKMDFKIFWLNLKNCNS----------------PETVLEMLQKL 205

Query: 373 LRQIQKSL-QVITGIGNHSRGQAALPTAVKNFLSESGYR 410
           L QI  +         N      ++   ++  L    Y 
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	428
2vkc_A	135	NEDD4-binding protein 2; human BCL3 binding protei	99.9
3fau_A	82	NEDD4-binding protein 2; SMR, small-MUTS related d	99.75
2d9i_A	96	NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3	99.69
3qd7_X	137	Uncharacterized protein YDAL; alpha/beta/alpha fol	99.09
2zqe_A	83	MUTS2 protein; alpha/beta, ATP-binding, DNA-bindin	98.72
2dhy_A	67	CUE domain-containing protein 1; structural genomi	97.69
1wgl_A	59	TOLL-interacting protein; CUE domain, structural g	97.37
1otr_A	49	Protein CUE2; protein-protein complex, cell cycle;	96.51
1p3q_Q	54	VPS9P, vacuolar protein sorting-associated protein	96.4
1z96_A	40	DNA-damage, UBA-domain protein MUD1; ubiquitin, th	86.77
2bwb_A	46	Ubiquitin-like protein DSK2; UBA, signaling protei	82.05
2knz_A	53	Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc	81.41
2jy5_A	52	Ubiquilin-1; UBA, alternative splicing, cytoplasm,	81.32
2g3q_A	43	Protein YBL047C; endocytosis, solution structure,	81.06
2dah_A	54	Ubiquilin-3; UBA domain, structural genomics, NPPS	80.24

>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1

Probab=99.75  E-value=1.2e-18  Score=140.64  Aligned_cols=80  Identities=43%  Similarity=0.612  Sum_probs=60.3

Q ss_pred             ccccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCCcccccccccccccchhhhhhhhhhhhccCceEEEEEc
Q 014250          306 KLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVITG  385 (428)
Q Consensus       306 ~LDLHGLhv~EAv~iL~e~L~~i~~q~~~~Rs~s~~~~k~k~G~~~s~~~~~f~~~~~e~~~~q~~~~r~~~~~L~VITG  385 (428)
                      +|||||++++||+.+|+++|..++..+           +                            .......+.||||
T Consensus         2 ~lDLHGl~v~eA~~~l~~~l~~~~~~~-----------~----------------------------~~~g~~~v~II~G   42 (82)
T 3fau_A            2 SLDLHGLHVDEALEHLMRVLEKKTEEF-----------K----------------------------QNGGKPYLSVITG   42 (82)
T ss_dssp             CEECTTSCHHHHHHHHHHHHHHHHHHH-----------H----------------------------HHCCCCEEEEECC
T ss_pred             eEECCCCcHHHHHHHHHHHHHHHHHHh-----------h----------------------------ccCCceEEEEEEC
Confidence            699999999999999999999876321           0                            0012257999999


Q ss_pred             cCCCCCCC-CCchHHHHHHHHHcCCeeeeCCCeEEEEeee
Q 014250          386 IGNHSRGQ-AALPTAVKNFLSESGYRFDEARPGVITVRPK  424 (428)
Q Consensus       386 rG~HS~G~-arLkpAV~~fL~e~Gyrf~E~~pGvI~V~~k  424 (428)
                      +|.||.++ ++||++|.+||.+++|+|+|.++|+|.|..|
T Consensus        43 kG~hS~~g~~~Lk~~V~~~L~~~~~~~~e~n~G~l~V~l~   82 (82)
T 3fau_A           43 RGNHSQGGVARIKPAVIKYLISHSFRFSEIKPGCLKVMLK   82 (82)
T ss_dssp             C---------CHHHHHHHHHHHTTCCEEEEETTEEEEEC-
T ss_pred             CCCCCCCCcchHHHHHHHHHHhCCCceeeCCCEEEEEEeC
Confidence            99999965 9999999999999999999999999999864

>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1

Probab=99.69  E-value=5.7e-17  Score=134.38  Aligned_cols=87  Identities=39%  Similarity=0.536  Sum_probs=72.5

Q ss_pred             CCCcccccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCCcccccccccccccchhhhhhhhhhhhccCceEE
Q 014250          302 NDMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQ  381 (428)
Q Consensus       302 n~~~~LDLHGLhv~EAv~iL~e~L~~i~~q~~~~Rs~s~~~~k~k~G~~~s~~~~~f~~~~~e~~~~q~~~~r~~~~~L~  381 (428)
                      ....+||||||+++||+++|+.+|......+           ++.                            .....+.
T Consensus         6 ~~~~~lDLHGl~v~eA~~~L~~~L~~~~~~~-----------~~~----------------------------~g~~~v~   46 (96)
T 2d9i_A            6 SGQNVLDLHGLHVDEALEHLMRVLEKKTEEF-----------KQN----------------------------GGKPYLS   46 (96)
T ss_dssp             CSCCEEECTTSCHHHHHHHHHHHHHHHHHHH-----------HHT----------------------------TCCSEEE
T ss_pred             CCCCeEECCCCCHHHHHHHHHHHHHHHHHHH-----------Hhh----------------------------CCCeEEE
Confidence            3567999999999999999999999764210           000                            1124799


Q ss_pred             EEEccCCCCCCC-CCchHHHHHHHHHcCCeeeeCCCeEEEEeeeccC
Q 014250          382 VITGIGNHSRGQ-AALPTAVKNFLSESGYRFDEARPGVITVRPKFRQ  427 (428)
Q Consensus       382 VITGrG~HS~G~-arLkpAV~~fL~e~Gyrf~E~~pGvI~V~~k~r~  427 (428)
                      ||||+|.||.++ ++||++|.+||.+++|+|.|.++|++.|..|..+
T Consensus        47 IIhGkG~hS~~g~~~Lk~~V~~~L~~~~~~~~egg~Ga~~V~L~~~~   93 (96)
T 2d9i_A           47 VITGRGNHSQGGVARIKPAVIKYLISHSFRFSEIKPGCLKVMLKSGP   93 (96)
T ss_dssp             EECCCSGGGTTCTTCHHHHHHHHHHHTTCCEECCSTTCEEEECCCCC
T ss_pred             EEECcCCCCCCCcchHHHHHHHHHhhCCCccccCCCcEEEEEEccCC
Confidence            999999999976 9999999999999999999899999999998765

>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}

Probab=99.09  E-value=9.3e-11  Score=103.96  Aligned_cols=81  Identities=16%  Similarity=0.209  Sum_probs=66.2

Q ss_pred             CCcccccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCCcccccccccccccchhhhhhhhhhhhccCceEEE
Q 014250          303 DMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQV  382 (428)
Q Consensus       303 ~~~~LDLHGLhv~EAv~iL~e~L~~i~~q~~~~Rs~s~~~~k~k~G~~~s~~~~~f~~~~~e~~~~q~~~~r~~~~~L~V  382 (428)
                      ....|||||++++||...|..+|.....                .|                            ...+.|
T Consensus        46 ~~~~LDLHG~~~~EA~~~L~~fL~~a~~----------------~g----------------------------~r~V~I   81 (137)
T 3qd7_X           46 QQASLNLLRQPVEECRKMVFSFIQQALA----------------DG----------------------------LRNVLI   81 (137)
T ss_dssp             GGGEEECTTCCHHHHHHHHHHHHHHHHH----------------TT----------------------------CSEEEE
T ss_pred             CCeEEECCCCCHHHHHHHHHHHHHHHHH----------------CC----------------------------CCEEEE
Confidence            3568999999999999999999997642                12                            247999


Q ss_pred             EEccCCCCCCC-CCchHHHHHHHHHcCCe--ee-----eCCCeEEEEeeeccC
Q 014250          383 ITGIGNHSRGQ-AALPTAVKNFLSESGYR--FD-----EARPGVITVRPKFRQ  427 (428)
Q Consensus       383 ITGrG~HS~G~-arLkpAV~~fL~e~Gyr--f~-----E~~pGvI~V~~k~r~  427 (428)
                      |||+|.||.++ +.||.+|..||.++.+.  |.     +-+.|++.|..|++.
T Consensus        82 IHGKG~gs~~~~~vLk~~V~~wL~~~~~V~~f~~a~~~~GG~Gat~V~Lr~~~  134 (137)
T 3qd7_X           82 IHGKGRDDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGGSGACYVALRKTA  134 (137)
T ss_dssp             ECCCCSSTTSHHHHHHHHHHHHHHTSTTEEEEEECCGGGTGGGEEEEEECC--
T ss_pred             EECCCCCCCCchHHHHHHHHHHHhcCCceeEEeecCccCCCCEEEEEEEEchh
Confidence            99999999976 79999999999998863  53     248999999988754

>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}

Probab=98.72  E-value=4.4e-08  Score=79.75  Aligned_cols=73  Identities=27%  Similarity=0.435  Sum_probs=58.9

Q ss_pred             CcccccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCCcccccccccccccchhhhhhhhhhhhccCceEEEE
Q 014250          304 MWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVI  383 (428)
Q Consensus       304 ~~~LDLHGLhv~EAv~iL~e~L~~i~~q~~~~Rs~s~~~~k~k~G~~~s~~~~~f~~~~~e~~~~q~~~~r~~~~~L~VI  383 (428)
                      ..+|||||++++||...|..+|.....                .|                            ...+.||
T Consensus         4 ~~~lDLhG~~~~eA~~~l~~fl~~a~~----------------~g----------------------------~~~v~II   39 (83)
T 2zqe_A            4 VKEVDLRGLTVAEALLEVDQALEEARA----------------LG----------------------------LSTLRLL   39 (83)
T ss_dssp             CCEEECTTCCHHHHHHHHHHHHHHHHH----------------TT----------------------------CSEEEEE
T ss_pred             ccEEECCCCCHHHHHHHHHHHHHHHHH----------------CC----------------------------CCEEEEE
Confidence            358999999999999999999997542                12                            2479999


Q ss_pred             EccCCCCCCCCCchHHHHHHHHHcCC--eeee-----CCCeEEEEeeec
Q 014250          384 TGIGNHSRGQAALPTAVKNFLSESGY--RFDE-----ARPGVITVRPKF  425 (428)
Q Consensus       384 TGrG~HS~G~arLkpAV~~fL~e~Gy--rf~E-----~~pGvI~V~~k~  425 (428)
                      +|+|.     ..||.+|..||.+..+  .|..     -+.|+..|..|+
T Consensus        40 HGkG~-----GvLr~~V~~~L~~~~~V~~f~~a~~~~GG~Gat~V~Lk~   83 (83)
T 2zqe_A           40 HGKGT-----GALRQAIREALRRDKRVESFADAPPGEGGHGVTVVALRP   83 (83)
T ss_dssp             CCSTT-----SHHHHHHHHHHHHCTTEEEEEECCTTTTGGGEEEEEECC
T ss_pred             ECCCc-----hHHHHHHHHHHhcCCceeEEEEcCcccCCCEEEEEEEeC
Confidence            99997     5899999999999875  3442     247999998763

>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.69  E-value=7.9e-05  Score=58.92  Aligned_cols=47  Identities=21%  Similarity=0.264  Sum_probs=43.5

Q ss_pred             hHHHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHHhhhhcCCC
Q 014250           95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMVSSSGS  141 (428)
Q Consensus        95 ~~~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~~m~~~~~~  141 (428)
                      ...+++.|++|||=.|..+|+.||.++++|++.|+..|-.|..+...
T Consensus        18 ~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms~~~~~   64 (67)
T 2dhy_A           18 FNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMNLESGP   64 (67)
T ss_dssp             SHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCCCCC
Confidence            44889999999999999999999999999999999999999986654

>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4

Probab=97.37  E-value=0.00019  Score=55.28  Aligned_cols=45  Identities=22%  Similarity=0.247  Sum_probs=41.9

Q ss_pred             HHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHHhhhhcCCC
Q 014250           97 LALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMVSSSGS  141 (428)
Q Consensus        97 ~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~~m~~~~~~  141 (428)
                      -.++.|++|||-.|..+|++||.+.++|++.|+..|-.|..+...
T Consensus        11 e~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~   55 (59)
T 1wgl_A           11 EDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEPSG   55 (59)
T ss_dssp             HHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCS
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCC
Confidence            689999999999999999999999999999999999999886553

>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4

Probab=96.51  E-value=0.0033  Score=46.85  Aligned_cols=43  Identities=16%  Similarity=0.111  Sum_probs=39.3

Q ss_pred             hHHHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHHhhhh
Q 014250           95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMVS  137 (428)
Q Consensus        95 ~~~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~~m~~  137 (428)
                      +.-.++.|++|||-.+...|+.+|.++++|++.|+..|=.|.+
T Consensus         4 ~e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~~   46 (49)
T 1otr_A            4 HESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKEND   46 (49)
T ss_dssp             HHHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhccc
Confidence            3468999999999999999999999999999999999888754

>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A

Probab=96.40  E-value=0.0012  Score=50.24  Aligned_cols=42  Identities=29%  Similarity=0.306  Sum_probs=32.2

Q ss_pred             hHHHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHHhhh
Q 014250           95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMV  136 (428)
Q Consensus        95 ~~~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~~m~  136 (428)
                      +...++.|++|||=.|.++|++|+.+-+++++.|...|=.|.
T Consensus        12 ~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLqms   53 (54)
T 1p3q_Q           12 RKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLSLS   53 (54)
T ss_dssp             HHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC------
T ss_pred             HHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHhhc
Confidence            567899999999999999999999999999999998887774

>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1

Probab=86.77  E-value=1  Score=30.56  Aligned_cols=35  Identities=17%  Similarity=0.271  Sum_probs=30.8

Q ss_pred             HHHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHH
Q 014250           96 DLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLL  132 (428)
Q Consensus        96 ~~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L  132 (428)
                      ..+|++|++|  ..+.+.++.+|.++++|++.|...|
T Consensus         5 ~~~i~~L~~m--Gf~~~~a~~AL~~~~~n~e~A~~~L   39 (40)
T 1z96_A            5 NSKIAQLVSM--GFDPLEAAQALDAANGDLDVAASFL   39 (40)
T ss_dssp             HHHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            4689999999  5678888999999999999999876

>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A

Probab=82.05  E-value=1.8  Score=31.23  Aligned_cols=37  Identities=14%  Similarity=0.169  Sum_probs=31.4

Q ss_pred             hHHHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHH
Q 014250           95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLL  132 (428)
Q Consensus        95 ~~~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L  132 (428)
                      ....|++|++|- .-|...+..+|.++++|+++|+..|
T Consensus         7 ~~~~i~~L~~MG-F~d~~~~~~AL~~~~gnv~~Ave~L   43 (46)
T 2bwb_A            7 YEHQLRQLNDMG-FFDFDRNVAALRRSGGSVQGALDSL   43 (46)
T ss_dssp             THHHHHHHHHTT-CCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHcC-CCcHHHHHHHHHHhCCCHHHHHHHH
Confidence            456899999994 4577788889999999999999877

>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}

Probab=81.41  E-value=1.9  Score=31.85  Aligned_cols=39  Identities=21%  Similarity=0.235  Sum_probs=33.7

Q ss_pred             hHHHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHHh
Q 014250           95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEG  134 (428)
Q Consensus        95 ~~~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~~  134 (428)
                      ....|++|++|- +-|.+.+..+|.++++|+++|+..|-.
T Consensus        11 ~~~~l~~L~~MG-F~~~~~~~~AL~~t~gnve~Ave~L~~   49 (53)
T 2knz_A           11 FQQQLEQLNSMG-FINREANLQALIATGGDINAAIERLLG   49 (53)
T ss_dssp             HHHHHHHHHTTT-CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC-CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            456799999994 669999999999999999999988743

>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B

Probab=81.32  E-value=2.4  Score=31.23  Aligned_cols=37  Identities=22%  Similarity=0.232  Sum_probs=32.8

Q ss_pred             hHHHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHH
Q 014250           95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLL  132 (428)
Q Consensus        95 ~~~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L  132 (428)
                      ....|++|++| .+-|.+.+..+|.++++|+++|+..|
T Consensus        12 ~~~~l~~L~~M-GF~~~~~~~~AL~~t~gn~e~A~e~L   48 (52)
T 2jy5_A           12 FQQQLEQLSAM-GFLNREANLQALIATGGDINAAIERL   48 (52)
T ss_dssp             THHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence            34789999999 46699999999999999999999887

>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=81.06  E-value=2  Score=30.05  Aligned_cols=34  Identities=24%  Similarity=0.390  Sum_probs=30.1

Q ss_pred             HHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHH
Q 014250           97 LALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLL  132 (428)
Q Consensus        97 ~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L  132 (428)
                      .+|++|.+|-  -+.+.+..+|.++++|++.|...|
T Consensus         6 ~~i~~L~~MG--F~~~~a~~AL~~~~~n~e~A~~~L   39 (43)
T 2g3q_A            6 LAVEELSGMG--FTEEEAHNALEKCNWDLEAATNFL   39 (43)
T ss_dssp             HHHHHHHTTT--SCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHHcC--CCHHHHHHHHHHhCcCHHHHHHHH
Confidence            6799999994  677888889999999999999887

>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=80.24  E-value=2.6  Score=31.45  Aligned_cols=39  Identities=15%  Similarity=0.268  Sum_probs=33.4

Q ss_pred             HHHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHHhh
Q 014250           96 DLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGM  135 (428)
Q Consensus        96 ~~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~~m  135 (428)
                      ...|++|++| ..-|...+..+|.++++|+++|+.+|-..
T Consensus        10 ~~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~   48 (54)
T 2dah_A           10 QVQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQS   48 (54)
T ss_dssp             HHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence            4679999999 46688888899999999999999988654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	428
d2d9ia1	83	d.68.8.1 (A:8-90) Nedd4-binding protein 2 {Human (	5e-13

>d2d9ia1 d.68.8.1 (A:8-90) Nedd4-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: SMR domain-like
family: Smr domain
domain: Nedd4-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (150), Expect = 5e-13
 Identities = 34/119 (28%), Positives = 45/119 (37%), Gaps = 40/119 (33%)

Query: 307 LDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVV 366
           LDLHGLH  EA++ L   L+K   +   N                               
Sbjct: 4   LDLHGLHVDEALEHLMRVLEKKTEEFKQN------------------------------- 32

Query: 367 DKQRSSLRQIQKSLQVITGIGNHSR-GQAALPTAVKNFLSESGYRFDEARPGVITVRPK 424
                     +  L VITG GNHS+ G A +  AV  +L    +RF E +PG + V  K
Sbjct: 33  --------GGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFSEIKPGCLKVMLK 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	428
d2d9ia1	83	Nedd4-binding protein 2 {Human (Homo sapiens) [Tax	99.82
d1mn3a_	54	Vacuolar protein sorting-associated protein vps9 {	97.25
d1wgla_	59	Toll-interacting protein {Human (Homo sapiens) [Ta	97.2

>d2d9ia1 d.68.8.1 (A:8-90) Nedd4-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: SMR domain-like
family: Smr domain
domain: Nedd4-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.3e-20  Score=150.88  Aligned_cols=81  Identities=41%  Similarity=0.566  Sum_probs=69.4

Q ss_pred             cccccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCCcccccccccccccchhhhhhhhhhhhccCceEEEEE
Q 014250          305 WKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVIT  384 (428)
Q Consensus       305 ~~LDLHGLhv~EAv~iL~e~L~~i~~q~~~~Rs~s~~~~k~k~G~~~s~~~~~f~~~~~e~~~~q~~~~r~~~~~L~VIT  384 (428)
                      +.||||||++.||+++|+.+|..++....                                       .......|+|||
T Consensus         2 ~~iDLHG~~~~eA~~~l~~~l~~~~~~~~---------------------------------------~~~~~~~l~IIt   42 (83)
T d2d9ia1           2 NVLDLHGLHVDEALEHLMRVLEKKTEEFK---------------------------------------QNGGKPYLSVIT   42 (83)
T ss_dssp             CEEECTTSCHHHHHHHHHHHHHHHHHHHH---------------------------------------HTTCCSEEEEEC
T ss_pred             CeEECCCCCHHHHHHHHHHHHHHHHHhhh---------------------------------------hcCCceEEEEEE
Confidence            58999999999999999999998763210                                       011235899999


Q ss_pred             ccCCCCCCC-CCchHHHHHHHHHcCCeeeeCCCeEEEEeee
Q 014250          385 GIGNHSRGQ-AALPTAVKNFLSESGYRFDEARPGVITVRPK  424 (428)
Q Consensus       385 GrG~HS~G~-arLkpAV~~fL~e~Gyrf~E~~pGvI~V~~k  424 (428)
                      |+|+||.++ ++||++|.+||.+++|+|+|.+||+|.|..|
T Consensus        43 G~G~hS~~g~~~lk~~V~~~L~~~~~~~~e~~~G~~~V~lk   83 (83)
T d2d9ia1          43 GRGNHSQGGVARIKPAVIKYLISHSFRFSEIKPGCLKVMLK   83 (83)
T ss_dssp             CCSGGGTTCTTCHHHHHHHHHHHTTCCEECCSTTCEEEECC
T ss_pred             CCCCCCCCCcchHHHHHHHHHHHCCCceecCCCcEEEEEeC
Confidence            999999955 9999999999999999999999999999875

>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Vacuolar protein sorting-associated protein vps9
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.25  E-value=0.00011  Score=54.27  Aligned_cols=42  Identities=29%  Similarity=0.316  Sum_probs=39.6

Q ss_pred             hHHHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHHhhh
Q 014250           95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMV  136 (428)
Q Consensus        95 ~~~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~~m~  136 (428)
                      +...++.|++|||-.|.++|++|+.+.+++++.|...|=+|+
T Consensus        12 ~~e~~~~Lk~MFP~~D~~VI~~VL~a~~G~vd~aidaLL~Ms   53 (54)
T d1mn3a_          12 RKDTLNTLQNMFPDMDPSLIEDVCIAKKSRIEPCVDALLSLS   53 (54)
T ss_dssp             HHHHHHHHHHHCTTSCHHHHHHHHSCSSCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence            567899999999999999999999999999999999998885

>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Toll-interacting protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00014  Score=54.41  Aligned_cols=44  Identities=23%  Similarity=0.250  Sum_probs=40.6

Q ss_pred             HHHHHHHHhccccchhHHHHHHHHhhccHHHHHHHHHhhhhcCC
Q 014250           97 LALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMVSSSG  140 (428)
Q Consensus        97 ~~~~~L~~~~~wad~~li~dv~~av~~d~~~a~~~L~~m~~~~~  140 (428)
                      ..++.|++|||-.|.++|++||.+.+++++.|...|=.|..+..
T Consensus        11 e~i~~LkeMFP~~D~~vI~~VL~a~~G~vd~aid~LL~Msd~~~   54 (59)
T d1wgla_          11 EDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEPS   54 (59)
T ss_dssp             HHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCC
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCCCc
Confidence            46999999999999999999999999999999999999987544