Citrus Sinensis ID: 014251

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------43
MAGAASALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNCNAASILLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEIMDFGFPQFTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLM
cccEEEEEEEEcccccEEEEEcccccccHHHHHHHHHHHHHHcccccccccEEEEccEEEEEEEEccEEEEEEEcccccHHHHHHHHHHHHHHHcccccccHHHHHccHHHHHHHHHHHHHHcccccccccHHHHHHHHcccccccccccccccccccccccccccEEEccEEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEEccccEEEEEEcccHHHHHccccccccEEEEEcccccccccccccccccEEEEEcccccEEEEEEEEcccccccEEEEEEEEEcccEEEEEEEEEEEcccccccEEEEEEEccccccccccEEEEcccEEEEEccccEEEEEEccccccccEEEEEEEEccccccccccccccccEEEEEEEccccccccEEEEEEEEEcccccccccEEEEEEEccEEEEcc
ccccEEEEEEEcccccEEEEEcccccccHHHHHHHHHHHHHHHHcccccccEEEEccEEEEEEEcccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccccccccHHcccEcccccccEEcccEEEEEHHHHEEEEEcccccEEEEEEEEEEEEEEEEccccccEEccccEEEEEcccccccccEEEEEccEEEEEEEEcccccccEEEEEcccccEEEEEEEccccccccEEEEEEEEEccccEEEEEEEEEEcccccccccEEEEEEEccccccccEEEEcEEEEEEcccccEEEEEEEEcccccEEEEEEEEcccccccccccccccccEEEEEEEEEEEcccEEEEEEEEEEccccccccEEEEEEccccEEEEEc
MAGAASALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFiekegdpqsqnpvvfdngvTYMFIQHNNVYLMAASRQNCNAASILLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEImdfgfpqftEAKILSEFIKTdayrmevtqrppmavTNAVSWrsegirykkneVFLDVVESVNILVnsngqivrSDVVGALKMRTylsgmpecklglndrVLLEAqgrstkgkaidlddikfhQCVRLArfendrtisfippdgsfdlmTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQfkerstatnveielpvpadatnpnvrtsmgsaryapenDALVWKIksfpgnkeyMLRAefslpsitaeeaaperkapirvkfeipyftvsGIQVRYLKIIEKsgyqalpwVRYITMAGEYELRLM
MAGAASALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFiekegdpqsqnPVVFDNGVTYMFIQHNNVYLMAASRQNCNAASILLFLHRVADVFKHYFEeleeeslrDNFVVVYELLDEIMDFGFPQFTEAKILSEFIKTDAyrmevtqrppmavtnavswrsegiRYKKNEVFLDVVESVNilvnsngqivrsdvVGALKMRTYLSGMPECKLGLNDRVLLEAQGRstkgkaidlddiKFHQCVRLarfendrtisfippdgsFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKArsqfkerstatnveielpvpadatnpnVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLpsitaeeaaperkapirvkfeipyftvsgIQVRYLKIIEksgyqalpwvrYITMAGEYELRLM
MAGAASALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNCNAASILLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEIMDFGFPQFTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLM
******ALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEK*******NPVVFDNGVTYMFIQHNNVYLMAASRQNCNAASILLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEIMDFGFPQFTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMV******************************************NDALVWKIKSFPGNKEYMLRAEFSLPSI**********APIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYE****
*AGAASALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNCNAASILLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEIMDFGFPQFTEAKILSEFIKT********************WRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLND***************IDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRA******************PIRVKFEIPYFTVSGIQVRYLKII*KSGYQALPWVRYITMAGEYELRLM
MAGAASALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNCNAASILLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEIMDFGFPQFTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLM
*AGAASALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNCNAASILLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEIMDFGFPQFTEAKILSEFIKTDAY****TQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLM
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MAGAASALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNCNAASILLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEIMDFGFPQFTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query428 2.2.26 [Sep-21-2011]
Q9BXS5423 AP-1 complex subunit mu-1 yes no 0.978 0.990 0.620 1e-162
Q2KJ81423 AP-1 complex subunit mu-1 yes no 0.978 0.990 0.620 1e-162
Q32Q06423 AP-1 complex subunit mu-1 yes no 0.978 0.990 0.620 1e-162
P35585423 AP-1 complex subunit mu-1 yes no 0.978 0.990 0.617 1e-162
P35602422 AP-1 complex subunit mu-1 yes no 0.981 0.995 0.608 1e-161
Q9Y6Q5423 AP-1 complex subunit mu-2 no no 0.978 0.990 0.603 1e-157
Q54HS9428 AP-1 complex subunit mu O yes no 0.978 0.978 0.594 1e-157
Q3SYW1423 AP-1 complex subunit mu-2 no no 0.978 0.990 0.599 1e-156
Q9WVP1423 AP-1 complex subunit mu-2 no no 0.978 0.990 0.599 1e-155
Q9HFE5426 AP-1 complex subunit mu-1 yes no 0.985 0.990 0.566 1e-147
>sp|Q9BXS5|AP1M1_HUMAN AP-1 complex subunit mu-1 OS=Homo sapiens GN=AP1M1 PE=1 SV=3 Back     alignment and function desciption
 Score =  572 bits (1474), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 263/424 (62%), Positives = 344/424 (81%), Gaps = 5/424 (1%)

Query: 4   AASALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFI 63
           +ASA+++LD+KG+VLI R+YRGDV   + E F    +EKE +    +P++   GV +M+I
Sbjct: 2   SASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGM-LSPILAHGGVRFMWI 60

Query: 64  QHNNVYLMAASRQNCNAASILLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEIMDF 123
           +HNN+YL+A S++N   + +  FL++V  VF  YF+ELEEES+RDNFV++YELLDE+MDF
Sbjct: 61  KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 120

Query: 124 GFPQFTEAKILSEFIKTDAYRMEV-TQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVESVN 182
           G+PQ T++KIL E+I  + +++E    RPP  VTNAVSWRSEGI+Y+KNEVFLDV+ESVN
Sbjct: 121 GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN 180

Query: 183 ILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDIKFH 242
           +LV++NG ++RS++VG++KMR +LSGMPE +LGLND+VL +  GR  K K+++L+D+KFH
Sbjct: 181 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRG-KSKSVELEDVKFH 239

Query: 243 QCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARS 302
           QCVRL+RFENDRTISFIPPDG F+LM+YRL+T VKPLIW+E+ IE+HS SRIE M+KA+S
Sbjct: 240 QCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMIKAKS 299

Query: 303 QFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAE 362
           QFK RSTA NVEI +PVP DA +P  +T++GS ++ PEN  +VW IKSFPG KEY++RA 
Sbjct: 300 QFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSIKSFPGGKEYLMRAH 359

Query: 363 FSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGE 422
           F LPS+ AE+   E K PI VKFEIPYFT SGIQVRYLKIIEKSGYQALPWVRYIT  G+
Sbjct: 360 FGLPSVEAEDK--EGKPPISVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGD 417

Query: 423 YELR 426
           Y+LR
Sbjct: 418 YQLR 421
Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.
Homo sapiens (taxid: 9606)
>sp|Q2KJ81|AP1M1_BOVIN AP-1 complex subunit mu-1 OS=Bos taurus GN=AP1M1 PE=1 SV=3 Back     alignment and function description
>sp|Q32Q06|AP1M1_RAT AP-1 complex subunit mu-1 OS=Rattus norvegicus GN=Ap1m1 PE=1 SV=3 Back     alignment and function description
>sp|P35585|AP1M1_MOUSE AP-1 complex subunit mu-1 OS=Mus musculus GN=Ap1m1 PE=1 SV=3 Back     alignment and function description
>sp|P35602|AP1M_CAEEL AP-1 complex subunit mu-1-I OS=Caenorhabditis elegans GN=unc-101 PE=2 SV=2 Back     alignment and function description
>sp|Q9Y6Q5|AP1M2_HUMAN AP-1 complex subunit mu-2 OS=Homo sapiens GN=AP1M2 PE=1 SV=4 Back     alignment and function description
>sp|Q54HS9|AP1M_DICDI AP-1 complex subunit mu OS=Dictyostelium discoideum GN=apm1 PE=1 SV=1 Back     alignment and function description
>sp|Q3SYW1|AP1M2_BOVIN AP-1 complex subunit mu-2 OS=Bos taurus GN=AP1M2 PE=1 SV=3 Back     alignment and function description
>sp|Q9WVP1|AP1M2_MOUSE AP-1 complex subunit mu-2 OS=Mus musculus GN=Ap1m2 PE=1 SV=3 Back     alignment and function description
>sp|Q9HFE5|AP1M1_SCHPO AP-1 complex subunit mu-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apm1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query428
255540561428 clathrin coat assembly protein ap-1, put 1.0 1.0 0.950 0.0
225470599428 PREDICTED: AP-1 complex subunit mu-1 [Vi 1.0 1.0 0.941 0.0
343172625428 AP-1 complex subunit mu, partial [Silene 1.0 1.0 0.941 0.0
449434961428 PREDICTED: AP-1 complex subunit mu-1-lik 1.0 1.0 0.929 0.0
449478746428 PREDICTED: AP-1 complex subunit mu-1-lik 0.997 0.997 0.927 0.0
224100165428 predicted protein [Populus trichocarpa] 1.0 1.0 0.915 0.0
224107797428 predicted protein [Populus trichocarpa] 1.0 1.0 0.915 0.0
356526771428 PREDICTED: AP-1 complex subunit mu-1-I-l 1.0 1.0 0.915 0.0
356567664428 PREDICTED: AP-1 complex subunit mu-1-I-l 1.0 1.0 0.915 0.0
297843902428 clathrin adaptor complexes medium subuni 1.0 1.0 0.915 0.0
>gi|255540561|ref|XP_002511345.1| clathrin coat assembly protein ap-1, putative [Ricinus communis] gi|223550460|gb|EEF51947.1| clathrin coat assembly protein ap-1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  858 bits (2218), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/428 (95%), Positives = 422/428 (98%)

Query: 1   MAGAASALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTY 60
           MAGAASALFLLDIKGRVLIWRDYRGDVSA+QAERFFTK IEKEGDPQSQ+PVV+DNGVTY
Sbjct: 1   MAGAASALFLLDIKGRVLIWRDYRGDVSAVQAERFFTKLIEKEGDPQSQDPVVYDNGVTY 60

Query: 61  MFIQHNNVYLMAASRQNCNAASILLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEI 120
           MFIQH+N+YLM+ASRQNCNAASILLFLHR+ DVFKHYFEELEEESLRDNFVVVYELLDEI
Sbjct: 61  MFIQHSNIYLMSASRQNCNAASILLFLHRLVDVFKHYFEELEEESLRDNFVVVYELLDEI 120

Query: 121 MDFGFPQFTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVES 180
           MDFGFPQFTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVES
Sbjct: 121 MDFGFPQFTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVES 180

Query: 181 VNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDIK 240
           VNILVNSNGQI+RSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGR+TKGKAIDLDDIK
Sbjct: 181 VNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRATKGKAIDLDDIK 240

Query: 241 FHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKA 300
           FHQCVRLARFENDRTISFIPPDG+FDLMTYRLSTQVKPLIWVEAQ+ERHSRSRIE MVKA
Sbjct: 241 FHQCVRLARFENDRTISFIPPDGAFDLMTYRLSTQVKPLIWVEAQVERHSRSRIEFMVKA 300

Query: 301 RSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLR 360
           RSQFKERSTATNVEIELPVP+DATNPN+R+SMGSA YAPENDALVWKIKSFPGNKEYMLR
Sbjct: 301 RSQFKERSTATNVEIELPVPSDATNPNIRSSMGSATYAPENDALVWKIKSFPGNKEYMLR 360

Query: 361 AEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMA 420
           AEF LPSITAEEA PERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMA
Sbjct: 361 AEFKLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMA 420

Query: 421 GEYELRLM 428
           GEYELRL+
Sbjct: 421 GEYELRLI 428

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225470599|ref|XP_002274463.1| PREDICTED: AP-1 complex subunit mu-1 [Vitis vinifera] gi|296083422|emb|CBI23375.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|343172625|gb|AEL99016.1| AP-1 complex subunit mu, partial [Silene latifolia] gi|343172627|gb|AEL99017.1| AP-1 complex subunit mu, partial [Silene latifolia] Back     alignment and taxonomy information
>gi|449434961|ref|XP_004135264.1| PREDICTED: AP-1 complex subunit mu-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449478746|ref|XP_004155408.1| PREDICTED: AP-1 complex subunit mu-1-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|224100165|ref|XP_002311769.1| predicted protein [Populus trichocarpa] gi|222851589|gb|EEE89136.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224107797|ref|XP_002314604.1| predicted protein [Populus trichocarpa] gi|222863644|gb|EEF00775.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356526771|ref|XP_003531990.1| PREDICTED: AP-1 complex subunit mu-1-I-like [Glycine max] Back     alignment and taxonomy information
>gi|356567664|ref|XP_003552037.1| PREDICTED: AP-1 complex subunit mu-1-I-like [Glycine max] Back     alignment and taxonomy information
>gi|297843902|ref|XP_002889832.1| clathrin adaptor complexes medium subunit family protein [Arabidopsis lyrata subsp. lyrata] gi|297335674|gb|EFH66091.1| clathrin adaptor complexes medium subunit family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query428
TAIR|locus:2036606428 HAP13 "HAPLESS 13" [Arabidopsi 1.0 1.0 0.908 2.4e-211
TAIR|locus:2019913428 AT1G10730 [Arabidopsis thalian 1.0 1.0 0.871 5e-202
UNIPROTKB|Q2KJ81423 AP1M1 "AP-1 complex subunit mu 0.978 0.990 0.620 5e-147
UNIPROTKB|J9P1I0423 AP1M1 "Uncharacterized protein 0.978 0.990 0.620 5e-147
UNIPROTKB|Q9BXS5423 AP1M1 "AP-1 complex subunit mu 0.978 0.990 0.620 5e-147
UNIPROTKB|F2Z5I7423 AP1M1 "Uncharacterized protein 0.978 0.990 0.620 5e-147
RGD|1307653423 Ap1m1 "adaptor-related protein 0.978 0.990 0.620 8.1e-147
MGI|MGI:102776423 Ap1m1 "adaptor-related protein 0.978 0.990 0.617 1e-146
UNIPROTKB|F1NZQ2416 AP1M1 "Uncharacterized protein 0.967 0.995 0.620 4e-145
FB|FBgn0024833426 AP-1mu "Adaptor Protein comple 0.981 0.985 0.605 6.6e-145
TAIR|locus:2036606 HAP13 "HAPLESS 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2043 (724.2 bits), Expect = 2.4e-211, P = 2.4e-211
 Identities = 389/428 (90%), Positives = 413/428 (96%)

Query:     1 MAGAASALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTY 60
             MAGAASALFLLDIKGRVL+WRDYRGDVSA QAERFFTK IEKEGD QS +PV +DNGVTY
Sbjct:     1 MAGAASALFLLDIKGRVLVWRDYRGDVSAAQAERFFTKLIEKEGDSQSNDPVAYDNGVTY 60

Query:    61 MFIQHNNVYLMAASRQNCNAASILLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEI 120
             MF+QH+NVYLM ASRQNCNAAS+L FLHRV DVFKHYFEELEEESLRDNFVVVYELLDE+
Sbjct:    61 MFVQHSNVYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEM 120

Query:   121 MDFGFPQFTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVES 180
             MDFG+PQ+TEA+ILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGI+YKKNEVFLDV+E+
Sbjct:   121 MDFGYPQYTEARILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVIEN 180

Query:   181 VNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDIK 240
             VNILVNSNGQIVRSDVVGALKMRTYL+GMPECKLGLNDRVLLEAQGR+TKGKAIDL+DIK
Sbjct:   181 VNILVNSNGQIVRSDVVGALKMRTYLTGMPECKLGLNDRVLLEAQGRATKGKAIDLEDIK 240

Query:   241 FHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKA 300
             FHQCVRLARFENDRTISFIPPDG+FDLMTYRLSTQVKPLIWVEAQIE HSRSR+E+++KA
Sbjct:   241 FHQCVRLARFENDRTISFIPPDGAFDLMTYRLSTQVKPLIWVEAQIESHSRSRVEMLIKA 300

Query:   301 RSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLR 360
             RSQFKERSTATNVEIELPVP DA+NP VRTS+GSA YAPE DALVWKIKSFPGNKEYMLR
Sbjct:   301 RSQFKERSTATNVEIELPVPTDASNPTVRTSLGSASYAPEKDALVWKIKSFPGNKEYMLR 360

Query:   361 AEFSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMA 420
             AEF LPSITAEEA PERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMA
Sbjct:   361 AEFHLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMA 420

Query:   421 GEYELRLM 428
             GEYELRL+
Sbjct:   421 GEYELRLV 428
GO:0006810 "transport" evidence=IEA
GO:0006886 "intracellular protein transport" evidence=IEA;ISS
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0030125 "clathrin vesicle coat" evidence=ISS
GO:0030131 "clathrin adaptor complex" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2019913 AT1G10730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KJ81 AP1M1 "AP-1 complex subunit mu-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J9P1I0 AP1M1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BXS5 AP1M1 "AP-1 complex subunit mu-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z5I7 AP1M1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1307653 Ap1m1 "adaptor-related protein complex 1, mu 1 subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:102776 Ap1m1 "adaptor-related protein complex AP-1, mu subunit 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NZQ2 AP1M1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0024833 AP-1mu "Adaptor Protein complex 1, mu subunit" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P35585AP1M1_MOUSENo assigned EC number0.61790.97890.9905yesno
Q54HS9AP1M_DICDINo assigned EC number0.59440.97890.9789yesno
P35602AP1M_CAEELNo assigned EC number0.60840.98130.9952yesno
Q32Q06AP1M1_RATNo assigned EC number0.62020.97890.9905yesno
Q9BXS5AP1M1_HUMANNo assigned EC number0.62020.97890.9905yesno
Q00776AP1M1_YEASTNo assigned EC number0.45870.98830.8905yesno
Q2KJ81AP1M1_BOVINNo assigned EC number0.62020.97890.9905yesno
Q9HFE5AP1M1_SCHPONo assigned EC number0.56600.98590.9906yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00009485001
SubName- Full=Chromosome undetermined scaffold_235, whole genome shotgun sequence; (428 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00002570001
SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (903 aa)
    ••• 0.705
GSVIVG00028856001
SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (822 aa)
    ••• 0.564

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query428
cd09250268 cd09250, AP-1_Mu1_Cterm, C-terminal domain of medi 0.0
cd09258270 cd09258, AP-1_Mu1A_Cterm, C-terminal domain of med 1e-165
cd09259264 cd09259, AP-1_Mu1B_Cterm, C-terminal domain of med 1e-149
cd09251263 cd09251, AP-2_Mu2_Cterm, C-terminal domain of medi 1e-120
pfam00928228 pfam00928, Adap_comp_sub, Adaptor complexes medium 1e-96
cd09253271 cd09253, AP-4_Mu4_Cterm, C-terminal domain of medi 3e-84
cd07954239 cd07954, AP_MHD_Cterm, C-terminal domain of adapto 7e-80
cd09252248 cd09252, AP-3_Mu3_Cterm, C-terminal domain of medi 7e-62
cd09260254 cd09260, AP-3_Mu3A_Cterm, C-terminal domain of med 1e-36
cd09261254 cd09261, AP-3_Mu3B_Cterm, C-terminal domain of med 2e-35
cd09255308 cd09255, AP-like_stonins_MHD, Mu homology domain ( 2e-32
cd09263314 cd09263, AP_stonin-2_MHD, Mu homology domain (MHD) 2e-18
cd09262309 cd09262, AP_stonin-1_MHD, Mu homology domain (MHD) 4e-18
cd09256271 cd09256, AP_MuD_MHD, Mu-homology domain (MHD) of a 6e-10
pfam10291251 pfam10291, muHD, Muniscin C-terminal mu homology d 0.001
>gnl|CDD|211361 cd09250, AP-1_Mu1_Cterm, C-terminal domain of medium Mu1 subunit in clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information 
 Score =  524 bits (1352), Expect = 0.0
 Identities = 203/268 (75%), Positives = 238/268 (88%), Gaps = 1/268 (0%)

Query: 156 TNAVSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLG 215
           TNAVSWR EGI+YKKNEVFLDV+ESVN+LV+ NGQ++RS++VG +KMR+YLSGMPE KLG
Sbjct: 1   TNAVSWRPEGIKYKKNEVFLDVIESVNLLVDLNGQVLRSEIVGTIKMRSYLSGMPELKLG 60

Query: 216 LNDRVLLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQ 275
           LND+VL EA GRS+KGKA++L+D+KFHQCVRL+RFENDRTISFIPPDG F+LM+YRLSTQ
Sbjct: 61  LNDKVLFEATGRSSKGKAVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLSTQ 120

Query: 276 VKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSA 335
           VKPLIWVE  +ERHSRSR+EIMVKA++QFK RSTA NVEI +PVP DA +P  + S GS 
Sbjct: 121 VKPLIWVEPTVERHSRSRVEIMVKAKTQFKRRSTANNVEIRIPVPPDADSPRFKCSAGSV 180

Query: 336 RYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEA-APERKAPIRVKFEIPYFTVSG 394
            YAPE DAL+WKIKSFPG KE+ +RAEF LPSI +EE    E+KAPI+VKFEIPYFTVSG
Sbjct: 181 VYAPEKDALLWKIKSFPGGKEFSMRAEFGLPSIESEEEQGTEKKAPIQVKFEIPYFTVSG 240

Query: 395 IQVRYLKIIEKSGYQALPWVRYITMAGE 422
           +QVRYLKIIEKSGYQALPWVRYIT +G+
Sbjct: 241 LQVRYLKIIEKSGYQALPWVRYITQSGD 268

AP complexes participate in the formation of intracellular coated transport vesicles and select cargo molecules for incorporation into the coated vesicles in the late secretory and endocytic pathways. There are four AP complexes, AP-1, AP-2, AP-3, and AP-4, described in various eukaryotic organisms. Each AP complex consists of four subunits: two large chains (one each of gamma/alpha/delta/epsilon and beta1-4, respectively), a medium mu chain (mu1-4), and a small sigma chain (sigma1-4). Each of the four subunits from the different AP complexes exhibits similarity with each other. This family corresponds to the C-terminal domain of heterotetrameric clathrin-associated adaptor protein complex 1 (AP-1) medium mu1 subunit, which includes two closely related homologs, mu1A (encoded by ap1m1) and mu1B (encoded by ap1m2). Mu1A is ubiquitously expressed, but mu1B is expressed exclusively in polarized epithelial cells. AP-1 has been implicated in bi-directional transport between the trans-Golgi network (TGN) and endosomes. It plays an essential role in the formation of clathrin-coated vesicles (CCVs) from the trans-Golgi network (TGN). Epithelial cell-specific AP-1 is also involved in sorting to the basolateral surface of polarized epithelial cells. Recruitment of AP-1 to the TGN membrane is regulated by a small GTPase, ADP-ribosylation factor 1 (ARF1). Phosphorylation/dephosphorylation events can also regulate the function of AP-1. The membrane-anchored cargo molecules can be linked to the outer lattice of CCVs by AP-1. Those cargo molecules interact with adaptors through short sorting signals in their cytosolic segments. Tyrosine-based endocytotic signals are one of the most important sorting signals. They are of the form Y-X-X-Phi, where Y is tyrosine, X is any amino acid and Phi is a bulky hydrophobic residue that can be Leu, Ile, Met, Phe, or Val. These kinds of sorting signals can be recognized by the C-terminal domain of AP-1 mu1 subunit, also known as Y-X-X-Phi signal-binding domain that contains two hydrophobic pockets, one for the tyrosine-binding and one for the bulky hydrophobic residue-binding. Length = 268
>gnl|CDD|211369 cd09258, AP-1_Mu1A_Cterm, C-terminal domain of medium Mu1A subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211370 cd09259, AP-1_Mu1B_Cterm, C-terminal domain of medium Mu1B subunit in epithelial cell-specific clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211362 cd09251, AP-2_Mu2_Cterm, C-terminal domain of medium Mu2 subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-2 Back     alignment and domain information
>gnl|CDD|216199 pfam00928, Adap_comp_sub, Adaptor complexes medium subunit family Back     alignment and domain information
>gnl|CDD|211364 cd09253, AP-4_Mu4_Cterm, C-terminal domain of medium Mu4 subunit in adaptor protein (AP) complex AP-4 Back     alignment and domain information
>gnl|CDD|211360 cd07954, AP_MHD_Cterm, C-terminal domain of adaptor protein (AP) complexes medium mu subunits and its homologs (MHD) Back     alignment and domain information
>gnl|CDD|211363 cd09252, AP-3_Mu3_Cterm, C-terminal domain of medium Mu3 subunit in adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|211371 cd09260, AP-3_Mu3A_Cterm, C-terminal domain of medium Mu3A subunit in ubiquitously expressed adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|211372 cd09261, AP-3_Mu3B_Cterm, C-terminal domain of medium Mu3B subunit in neuron-specific adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|211366 cd09255, AP-like_stonins_MHD, Mu homology domain (MHD) of adaptor-like proteins (AP-like), stonins Back     alignment and domain information
>gnl|CDD|211374 cd09263, AP_stonin-2_MHD, Mu homology domain (MHD) of adaptor-like protein (AP-like), stonin-2 Back     alignment and domain information
>gnl|CDD|211373 cd09262, AP_stonin-1_MHD, Mu homology domain (MHD) of adaptor-like protein (AP-like), stonin-1 (also called Stoned B-like factor) Back     alignment and domain information
>gnl|CDD|211367 cd09256, AP_MuD_MHD, Mu-homology domain (MHD) of a adaptor protein (AP) encoded by mu-2 related death-inducing gene, MuD (also known as MUDENG) Back     alignment and domain information
>gnl|CDD|220677 pfam10291, muHD, Muniscin C-terminal mu homology domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 428
KOG0938446 consensus Adaptor complexes medium subunit family 100.0
KOG0937424 consensus Adaptor complexes medium subunit family 100.0
KOG2740418 consensus Clathrin-associated protein medium chain 100.0
PF00928262 Adap_comp_sub: Adaptor complexes medium subunit fa 100.0
KOG2635512 consensus Medium subunit of clathrin adaptor compl 100.0
KOG2677922 consensus Stoned B synaptic vesicle biogenesis pro 100.0
PF01217141 Clat_adaptor_s: Clathrin adaptor complex small cha 99.95
COG5030152 APS2 Clathrin adaptor complex, small subunit [Intr 99.85
KOG3343175 consensus Vesicle coat complex COPI, zeta subunit 99.8
KOG0935143 consensus Clathrin adaptor complex, small subunit 99.78
KOG0934145 consensus Clathrin adaptor complex, small subunit 99.78
KOG0936182 consensus Clathrin adaptor complex, small subunit 99.74
COG5541187 RET3 Vesicle coat complex COPI, zeta subunit [Post 99.42
PF10291257 muHD: Muniscin C-terminal mu homology domain; Inte 99.03
PF03164415 Mon1: Trafficking protein Mon1; InterPro: IPR00435 95.43
PF15001189 AP-5_subunit_s1: AP-5 complex subunit sigma-1 95.13
KOG0997523 consensus Uncharacterized conserved protein Sand [ 92.45
COG5122134 TRS23 Transport protein particle (TRAPP) complex s 91.95
PF04099142 Sybindin: Sybindin-like family ; InterPro: IPR0072 91.2
PF08923119 MAPKK1_Int: Mitogen-activated protein kinase kinas 90.73
PF1377483 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3 90.34
KOG0859217 consensus Synaptobrevin/VAMP-like protein [Intrace 89.71
KOG0781 587 consensus Signal recognition particle receptor, al 87.59
PF09201148 SRX: SRX; InterPro: IPR015284 The signal recogniti 87.02
>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=6.6e-103  Score=724.75  Aligned_cols=417  Identities=42%  Similarity=0.755  Sum_probs=387.2

Q ss_pred             ceEEEEEEcCCCCEEEEEccCCCCChhHHHHHHHHHhcccCCCCCCCCEEEeCCEEEEEEEeCcEEEEEEecCCCCHHHH
Q 014251            4 AASALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNCNAASI   83 (428)
Q Consensus         4 Mi~~i~Il~~~G~~l~~r~y~~~~~~~~~~~f~~~i~~~~~~~~~~~pii~~~~~~~v~~~~~~ly~v~~~~~~~n~~~~   83 (428)
                      ||+++||+|.+|++|+.|.||++..++..+.|.-+++...   ...+|+..+++..|+|.+.++||++++|..|.|.+.+
T Consensus         1 misglfi~n~rGevlink~fr~dlkrs~~diFRv~vi~n~---d~r~PV~~igsttf~~~r~~nl~lvaitksN~Nva~v   77 (446)
T KOG0938|consen    1 MISGLFIYNLRGEVLINKTFRDDLKRSIVDIFRVQVINNL---DVRSPVLTIGSTTFHHIRSSNLWLVAITKSNANVAAV   77 (446)
T ss_pred             CcceEEEEeccCcEEEehhhhhhhhhhHHHHHHHhhhhcc---ccCCCeeEecceeEEEEeeccEEEEEEecCCCchhhH
Confidence            8999999999999999999999999999999999999874   3589999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHhcCCeeeecchHHHhhhccCcccccccc----c-----CCC--
Q 014251           84 LLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEIMDFGFPQFTEAKILSEFIKTDAYRMEVT----Q-----RPP--  152 (428)
Q Consensus        84 ~~~L~~~~~~l~~~~~~l~e~~i~~N~~~i~~lldeiid~G~p~~t~~~~l~~~i~~~~~~~~~~----~-----~~~--  152 (428)
                      ++||..+.+++..|||+++|+.|++||.+|||+||||+|+|+||+|++++|+..|..+++..+-.    +     +++  
T Consensus        78 ~eFl~kl~avm~aYfgk~~Eeaiknnf~lI~ElLDemld~G~pqnte~~al~~~is~~~Vrs~g~~ls~k~s~~sq~~~~  157 (446)
T KOG0938|consen   78 FEFLYKLDAVMNAYFGKDREEAIKNNFVLIYELLDEMLDFGIPQNTEPNALKAQISQKGVRSMGGVLSSKSSPTSQATEL  157 (446)
T ss_pred             HHHHHHHHHHHHHHhcccchhhhhhceEeHHHHHHHHHhcCCCccCChhHHHhhhhhhhhhccccccCCcCCCCcccccc
Confidence            99999999999999999999999999999999999999999999999999999999887765521    1     122  


Q ss_pred             --CccccccccccCCCCcccceEEEEEEEeEeEEEeccCcEEEEEEEEEEEEEEEecCCCeEEEEeccchhhhc-cCC--
Q 014251          153 --MAVTNAVSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEA-QGR--  227 (428)
Q Consensus       153 --~~~~~~~~wR~~~~~~~~nEI~vdV~E~i~~~~~~~G~v~~~~I~G~I~~~s~LsG~P~~~l~ln~~~~~~~-~~~--  227 (428)
                        ++.++.++||+.|++|++||+|+||+|+++..++++|++++++|.|.|.|+|+|||||+|+++|||...+.+ ++.  
T Consensus       158 ~ssqv~G~i~WRr~Gi~ykknevfldvvErvNlLmS~~GnVLrs~VsG~V~mk~~LSGmPeckfGlNDkl~~e~kq~esk  237 (446)
T KOG0938|consen  158 RSSQVTGKIGWRREGIKYKKNEVFLDVVERVNLLMSSDGNVLRSDVSGTVDMKTHLSGMPECKFGLNDKLGMESKQSESK  237 (446)
T ss_pred             cccccccccccccccceeccceeEeEehheeeeEEcCCCCEEEeecccEEEEEEeccCCcccccccCcccceeecccccc
Confidence              345678999999999999999999999999999999999999999999999999999999999999987763 211  


Q ss_pred             ---------C-CCCceEEecccceeeeeccccccCCceEEEeCCCCceEEEEEEecCCC-CCcEEEEEEEEEccceEEEE
Q 014251          228 ---------S-TKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQV-KPLIWVEAQIERHSRSRIEI  296 (428)
Q Consensus       228 ---------~-~~~~~i~l~d~~fH~cV~~~~~~~~~~l~F~PPdG~f~Lm~Yr~~~~~-~P~~~v~~~~~~~~~~~~e~  296 (428)
                               + +....+.|+||.||+||++++|++++.|+|+||||+|+||+||+..++ +||. +.|.+++.+.+++||
T Consensus       238 s~~~n~~~~sks~~g~v~leDc~FHqCV~L~kFn~eh~IsFvPPDGe~ELMkYr~~enInlPFr-V~PiV~el~r~kie~  316 (446)
T KOG0938|consen  238 SDFGNKNFPSKSGKGSVLLEDCTFHQCVRLDKFNSEHIISFVPPDGEFELMKYRVTENINLPFR-VTPIVTELGRTKIEY  316 (446)
T ss_pred             ccccccCCCcccCCceEEeeccchheeeccccccccceEEEeCCCCceEeEeeeeccCcccceE-eeeheecccceeEEE
Confidence                     1 244568999999999999999999999999999999999999999887 8886 469999988899999


Q ss_pred             EEEeeccCCCcceeeeEEEEecCCCCCCCceEEecceeEEEeCCCCeEEEEeceeCCCcceEEEEEEEecCCC-ccccCC
Q 014251          297 MVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSIT-AEEAAP  375 (428)
Q Consensus       297 ~l~~~~~~~~~~~~~~v~v~ip~P~~~~~~~~~~~~G~~~~~~~~~~i~W~I~k~~g~~~~~l~~~~~~~~~~-~~~~~~  375 (428)
                      ++.+++.|++++.+.+|.++||+|+++..+.++++.|+++|.+++++++|+|+|++|.+|.+|++++++.+.. +...| 
T Consensus       317 ri~iks~f~~kl~a~~v~~rIPvP~ntv~~n~~v~~Gkaky~psen~ivWki~kf~G~tE~tlsAevels~Tt~nkq~W-  395 (446)
T KOG0938|consen  317 RITIKSLFPPKLLAKDVVVRIPVPPNTVKCNISVSNGKAKYVPSENAIVWKINKFNGLTESTLSAEVELSDTTQNKQQW-  395 (446)
T ss_pred             EEEEeccCCchhhhcceEEEecCCCccccceeEEecCccccCcccceEEEEecccCCcccceeEEEEEeccCccccccc-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999997755 55678 


Q ss_pred             CCCCceEEEEEeCceeccccEEEEEEEEE-cCCCCcccceEEEEEeccEEEE
Q 014251          376 ERKAPIRVKFEIPYFTVSGIQVRYLKIIE-KSGYQALPWVRYITMAGEYELR  426 (428)
Q Consensus       376 ~~~~pi~v~F~ip~~t~SGl~V~~l~v~~-~~~~~~~k~vrY~t~sg~y~~R  426 (428)
                       ..+||+++|++|||+.|||.|++|+|.+ +++|+..|||||+|+||+||+|
T Consensus       396 -trPPIsleFeV~MFt~SGL~VrylkV~e~~Sk~~~vkWVrYitkaGsyEiR  446 (446)
T KOG0938|consen  396 -TRPPISLEFEVPMFTNSGLVVRYLKVSEKDSKHRAVKWVRYITKAGSYEIR  446 (446)
T ss_pred             -cCCCceeEEeeeeecCCceEEEEEEEecccCCCceEEEEEEecccceeeeC
Confidence             8999999999999999999999999998 5889999999999999999998

>KOG0937 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00928 Adap_comp_sub: Adaptor complexes medium subunit family; InterPro: IPR008968 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2677 consensus Stoned B synaptic vesicle biogenesis protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG3343 consensus Vesicle coat complex COPI, zeta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0935 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0934 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0936 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5541 RET3 Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10291 muHD: Muniscin C-terminal mu homology domain; InterPro: IPR018808 The muniscins are a family of endocytic adaptors that is conserved from yeast to humans Back     alignment and domain information
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain Back     alignment and domain information
>PF15001 AP-5_subunit_s1: AP-5 complex subunit sigma-1 Back     alignment and domain information
>KOG0997 consensus Uncharacterized conserved protein Sand [Function unknown] Back     alignment and domain information
>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses Back     alignment and domain information
>PF08923 MAPKK1_Int: Mitogen-activated protein kinase kinase 1 interacting; InterPro: IPR015019 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases Back     alignment and domain information
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D Back     alignment and domain information
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09201 SRX: SRX; InterPro: IPR015284 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query428
1w63_M423 Ap1 Clathrin Adaptor Core Length = 423 1e-163
4en2_M266 Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain 1e-113
4emz_A266 Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain 1e-109
2bp5_M435 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 4e-90
2xa7_M446 Ap2 Clathrin Adaptor Core In Active Complex With Ca 1e-88
1i31_A314 Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor, 2e-62
1bw8_A321 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 2e-62
2pr9_A299 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 5e-61
1bxx_A285 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 5e-61
1h6e_A288 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 7e-59
3ml6_A385 A Complex Between Dishevlled2 And Clathrin Adaptor 6e-56
4ikn_A261 Crystal Structure Of Adaptor Protein Complex 3 (ap- 4e-32
3l81_A301 Crystal Structure Of Adaptor Protein Complex 4 (Ap- 7e-30
>pdb|1W63|M Chain M, Ap1 Clathrin Adaptor Core Length = 423 Back     alignment and structure 
Iteration: 1

 Score =  571 bits (1472), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 262/424 (61%), Positives = 344/424 (81%), Gaps = 5/424 (1%)
Query: 4   AASALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFI 63
           +ASA+++LD+KG+VLI R+YRGDV   + E F    +EKE +    +P++   GV +M+I
Sbjct: 2   SASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKE-EEGMLSPILAHGGVRFMWI 60
Query: 64  QHNNVYLMAASRQNCNAASILLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEIMDF 123
           +HNN+YL+A S++N   + +  FL++V  VF  YF+ELEEES+RDNFV++YELLDE+MDF
Sbjct: 61  KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 120
Query: 124 GFPQFTEAKILSEFIKTDAYRMEV-TQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVESVN 182
           G+PQ T++KIL EFI  + +++E    RPP  VTNAVSWRSEGI+Y+KNEVFLDV+E+VN
Sbjct: 121 GYPQTTDSKILQEFITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIEAVN 180
Query: 183 ILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDIKFH 242
           +LV++NG ++RS++VG++KMR +LSGMPE +LGLND+VL +  GR  K K+++L+D+KFH
Sbjct: 181 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRG-KSKSVELEDVKFH 239
Query: 243 QCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARS 302
           QCVRL+RFENDRTISFIPPDG F+LM+YRL+T VKPLIW+E+ IE+HS SRIE MVKA+S
Sbjct: 240 QCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKS 299
Query: 303 QFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAE 362
           QFK RSTA NVEI +PVP DA +P  +T++GS ++ PEN  +VW +KSFPG KEY++RA 
Sbjct: 300 QFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSVKSFPGGKEYLMRAH 359
Query: 363 FSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGE 422
           F LPS+ AE+   E K PI VKFEIPYFT SGIQVRYLKIIEKSGYQA+PWVRYIT  G+
Sbjct: 360 FGLPSVEAEDK--EGKPPISVKFEIPYFTTSGIQVRYLKIIEKSGYQAIPWVRYITQNGD 417
Query: 423 YELR 426
           Y+LR
Sbjct: 418 YQLR 421
>pdb|4EN2|M Chain M, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1 Adaptin Subunit Of Ap1 Adaptor (Second Domain) Length = 266 Back     alignment and structure
>pdb|4EMZ|A Chain A, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1 Adaptin Subunit Of Ap1 Adaptor (Second Domain) Length = 266 Back     alignment and structure
>pdb|2BP5|M Chain M, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Non-Canonical Internalization Peptide Vedyeqglsg Length = 435 Back     alignment and structure
>pdb|2XA7|M Chain M, Ap2 Clathrin Adaptor Core In Active Complex With Cargo Peptides Length = 446 Back     alignment and structure
>pdb|1I31|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor, Complexed With Egfr Internalization Peptide Fyralm At 2.5 A Resolution Length = 314 Back     alignment and structure
>pdb|1BW8|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Egfr Internalization Peptide Fyralm Length = 321 Back     alignment and structure
>pdb|2PR9|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Gabaa Receptor-Gamma2 Subunit-Derived Internalization Peptide Deeygyecl Length = 299 Back     alignment and structure
>pdb|1BXX|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Tgn38 Internalization Peptide Dyqrln Length = 285 Back     alignment and structure
>pdb|1H6E|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Ctla-4 Internalization Peptide Ttgvyvkmppt Length = 288 Back     alignment and structure
>pdb|3ML6|A Chain A, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2 Length = 385 Back     alignment and structure
>pdb|4IKN|A Chain A, Crystal Structure Of Adaptor Protein Complex 3 (ap-3) Mu3a Subunit C- Terminal Domain, In Complex With A Sorting Peptide From Tgn38 Length = 261 Back     alignment and structure
>pdb|3L81|A Chain A, Crystal Structure Of Adaptor Protein Complex 4 (Ap-4) Mu4 Su Terminal Domain, In Complex With A Sorting Peptide From The Precursor Protein (App) Length = 301 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query428
1w63_M423 Adaptor-related protein complex 1, MU 1 subunit; e 1e-137
2vgl_M435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 1e-134
1i31_A314 Clathrin coat assembly protein AP50; beta-sandwich 1e-104
4en2_M266 AP-1 complex subunit MU-1; human immunodeficiency 1e-100
3l81_A301 AP-4 complex subunit MU-1; immunoglobulin-like bet 3e-99
3ml6_A385 Chimeric complex between protein dishevlled2 HOMO 1e-97
2vgl_S142 AP-2 complex subunit sigma-1; cytoplasmic vesicle, 6e-27
1w63_Q158 Adapter-related protein complex 1 sigma 1A subunit 1e-26
3tjz_C153 Coatomer subunit zeta-1; protein trafficking, golg 8e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 423 Back     alignment and structure
 Score =  398 bits (1022), Expect = e-137
 Identities = 261/424 (61%), Positives = 343/424 (80%), Gaps = 5/424 (1%)

Query: 4   AASALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFI 63
           +ASA+++LD+KG+VLI R+YRGDV   + E F    +EKE +    +P++   GV +M+I
Sbjct: 2   SASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKE-EEGMLSPILAHGGVRFMWI 60

Query: 64  QHNNVYLMAASRQNCNAASILLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEIMDF 123
           +HNN+YL+A S++N   + +  FL++V  VF  YF+ELEEES+RDNFV++YELLDE+MDF
Sbjct: 61  KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 120

Query: 124 GFPQFTEAKILSEFIKTDAYRMEVTQR-PPMAVTNAVSWRSEGIRYKKNEVFLDVVESVN 182
           G+PQ T++KIL EFI  + +++E     PP  VTNAVSWRSEGI+Y+KNEVFLDV+E+VN
Sbjct: 121 GYPQTTDSKILQEFITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIEAVN 180

Query: 183 ILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDIKFH 242
           +LV++NG ++RS++VG++KMR +LSGMPE +LGLND+VL +  GR  K K+++L+D+KFH
Sbjct: 181 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRG-KSKSVELEDVKFH 239

Query: 243 QCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARS 302
           QCVRL+RFENDRTISFIPPDG F+LM+YRL+T VKPLIW+E+ IE+HS SRIE MVKA+S
Sbjct: 240 QCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKS 299

Query: 303 QFKERSTATNVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAE 362
           QFK RSTA NVEI +PVP DA +P  +T++GS ++ PEN  +VW +KSFPG KEY++RA 
Sbjct: 300 QFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSVKSFPGGKEYLMRAH 359

Query: 363 FSLPSITAEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGE 422
           F LPS+ AE+   E K PI VKFEIPYFT SGIQVRYLKIIEKSGYQA+PWVRYIT  G+
Sbjct: 360 FGLPSVEAED--KEGKPPISVKFEIPYFTTSGIQVRYLKIIEKSGYQAIPWVRYITQNGD 417

Query: 423 YELR 426
           Y+LR
Sbjct: 418 YQLR 421
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Length = 435 Back     alignment and structure
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A Length = 314 Back     alignment and structure
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A Length = 266 Back     alignment and structure
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} Length = 301 Back     alignment and structure
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Length = 385 Back     alignment and structure
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Length = 142 Back     alignment and structure
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 158 Back     alignment and structure
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Length = 153 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query428
2vgl_M435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 100.0
1w63_M423 Adaptor-related protein complex 1, MU 1 subunit; e 100.0
1i31_A314 Clathrin coat assembly protein AP50; beta-sandwich 100.0
4en2_M266 AP-1 complex subunit MU-1; human immunodeficiency 100.0
3ml6_A385 Chimeric complex between protein dishevlled2 HOMO 100.0
3l81_A301 AP-4 complex subunit MU-1; immunoglobulin-like bet 100.0
1w63_Q158 Adapter-related protein complex 1 sigma 1A subunit 99.98
2vgl_S142 AP-2 complex subunit sigma-1; cytoplasmic vesicle, 99.97
3tjz_C153 Coatomer subunit zeta-1; protein trafficking, golg 99.96
3g9h_A328 Suppressor of yeast profilin deletion; SYP1, MU, a 99.07
2nut_C196 Vesicle-trafficking protein SEC22B; human copii SE 94.05
4b93_A189 Vesicle-associated membrane protein 7; endocytosis 93.1
3bw6_A144 Synaptobrevin homolog YKT6; YKT6P, farnesylation, 92.54
4afi_A173 AP-3 complex subunit delta-1, vesicle-associated p 92.14
3cue_A219 Transport protein particle 23 kDa subunit; membran 91.72
1nrj_A158 Signal recognition particle receptor alpha subunit 91.36
2vx8_A169 Nucleoporin-like protein RIP, vesicle-associated m 91.0
3cpt_A143 Mitogen-activated protein kinase kinase 1- interac 89.69
2fh5_A185 Signal recognition particle receptor alpha subunit 88.85
2j3t_C145 Trafficking protein particle complex subunit 1, tr 88.59
2j3w_A142 Sedlin, trafficking protein particle complex prote 88.54
3cue_C159 Transport protein particle 18 kDa subunit; membran 82.15
3kyq_A199 YKT6, synaptobrevin homolog YKT6; V-snare homolog, 82.0
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Back     alignment and structure
Probab=100.00  E-value=2.1e-98  Score=765.11  Aligned_cols=419  Identities=40%  Similarity=0.754  Sum_probs=368.1

Q ss_pred             ceEEEEEEcCCCCEEEEEccCCCCChhHHHHHHHHHhcccCCCCCCCCEEEeCCEEEEEEEeCcEEEEEEecCCCCHHHH
Q 014251            4 AASALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNCNAASI   83 (428)
Q Consensus         4 Mi~~i~Il~~~G~~l~~r~y~~~~~~~~~~~f~~~i~~~~~~~~~~~pii~~~~~~~v~~~~~~ly~v~~~~~~~n~~~~   83 (428)
                      ||+++||+|++|+++++|+|+++.++..++.|++++....+  ...+|++++++++|+|+++++|||+|+++.++||+++
T Consensus         1 MI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~--~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~   78 (435)
T 2vgl_M            1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQ--QVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMV   78 (435)
T ss_dssp             CCCEEEEECTTCCEEEEEECSSSCCHHHHHHHHHHTTTCSS--CCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHHH
T ss_pred             CeEEEEEECCCCCEEEEEecCCCCChhHHHHHHHHHhcccc--CCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence            89999999999999999999998888889999999886542  2579999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHhcCCeeeecchHHHhhhccCccccccc-----ccCCCCccccc
Q 014251           84 LLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEIMDFGFPQFTEAKILSEFIKTDAYRMEV-----TQRPPMAVTNA  158 (428)
Q Consensus        84 ~~~L~~~~~~l~~~~~~l~e~~i~~N~~~i~~lldeiid~G~p~~t~~~~l~~~i~~~~~~~~~-----~~~~~~~~~~~  158 (428)
                      ++|||+|+++|++||++++|++|++||++||++||||+|+|+|++|+++.|++++.++++..+.     ...+|++.+++
T Consensus        79 le~L~~~v~vl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  158 (435)
T 2vgl_M           79 FEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQ  158 (435)
T ss_dssp             HHHHHHHHHHHHHHHSSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCCCCCCCC-----------------
T ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhccccccccccccccccccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999987653     12445667788


Q ss_pred             cccccCCCCcccceEEEEEEEeEeEEEeccCcEEEEEEEEEEEEEEEecCCCeEEEEeccchhhhccCCC-----C--CC
Q 014251          159 VSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRS-----T--KG  231 (428)
Q Consensus       159 ~~wR~~~~~~~~nEI~vdV~E~i~~~~~~~G~v~~~~I~G~I~~~s~LsG~P~~~l~ln~~~~~~~~~~~-----~--~~  231 (428)
                      +|||+.|++|++|||||||+|+|+++++++|.+++++|.|.|.|+|+|+|+|+|+|+||++..++.++++     +  ..
T Consensus       159 i~wr~~gi~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~ln~~~~~~~~~~~~~~~~~~~~~  238 (435)
T 2vgl_M          159 IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGK  238 (435)
T ss_dssp             CCSSCSCCCCSSCEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEECSSCCEEEEEECSSSCC----------------
T ss_pred             cccccccCCcCcceEEEEEEEEEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeEEEEeCchhhccccccccccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999998665433211     0  12


Q ss_pred             ceEEecccceeeeeccccccCCceEEEeCCCCceEEEEEEecCCCCCcEEEEEEEEEccceEEEEEEEeeccCCCcceee
Q 014251          232 KAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTAT  311 (428)
Q Consensus       232 ~~i~l~d~~fH~cV~~~~~~~~~~l~F~PPdG~f~Lm~Yr~~~~~~P~~~v~~~~~~~~~~~~e~~l~~~~~~~~~~~~~  311 (428)
                      .++.|+||+|||||++++|+++|.|+|+||||+|+||+||++.+..||+.+.|++++.+++++||+++++++++.+..++
T Consensus       239 ~~~~l~d~~fH~cV~~~~f~~~r~isF~PPdg~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~ve~~l~~~~~~~~~~~~~  318 (435)
T 2vgl_M          239 QSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQ  318 (435)
T ss_dssp             -CCCCCEEEECTTEEEC-----CCEEECCCSEEEEEEEEEECSSCCCSEEEEEEEECCTTTEEEEEEEEEECSCTTSEEE
T ss_pred             CceEccccccceeecHhHhccCceEEEECCCCcEEEEEEEecCCcCCCeEEEEEEEecCCCEEEEEEEEeCCCCCCceee
Confidence            46789999999999999999999999999999999999999887765556789998776679999999999999888899


Q ss_pred             eEEEEecCCCCCCCceEEecceeEEEeCCCCeEEEEeceeCCCcceEEEEEEEecCCCccccCCCCCCceEEEEEeCcee
Q 014251          312 NVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFT  391 (428)
Q Consensus       312 ~v~v~ip~P~~~~~~~~~~~~G~~~~~~~~~~i~W~I~k~~g~~~~~l~~~~~~~~~~~~~~~~~~~~pi~v~F~ip~~t  391 (428)
                      ||.|+||+|+++..+.++++.|+++|++++++++|+|++++|+++++++|++++++......+  .++||+|+|++| ++
T Consensus       319 ~V~I~IP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~I~~~~~~~~~~l~~~~~l~~~~~~~~~--~~~pi~v~F~i~-~t  395 (435)
T 2vgl_M          319 KIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKW--ARPPISMNFEVP-FA  395 (435)
T ss_dssp             EEEEEEECCSSCCCEEEEESSSEEEEETTTTEEEEEEEEEETTCEEEEEEEEECCCCSCSCCC--CCCCEEEEEEES-SC
T ss_pred             EEEEEEECCCCCCCceEEecceeEEEccCCCEEEEEeccCCCCCCEEEEEEEEecCCCcCccc--CCCcEEEEEEEE-ec
Confidence            999999999999999999999999999999999999999999999999999999874323334  689999999999 99


Q ss_pred             ccccEEEEEEEEEc----CCCCcccceEEEEEeccEEEEc
Q 014251          392 VSGIQVRYLKIIEK----SGYQALPWVRYITMAGEYELRL  427 (428)
Q Consensus       392 ~SGl~V~~l~v~~~----~~~~~~k~vrY~t~sg~y~~R~  427 (428)
                      +|||+|++|+|.++    ++|+|+|||||+|+||+|++|+
T Consensus       396 ~Sgl~V~~l~v~~~~~~~~~y~~~kwVrY~t~sg~y~~R~  435 (435)
T 2vgl_M          396 PSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC  435 (435)
T ss_dssp             TTCCCEEEEEEECSSSSCBGGGSEEEEEEEEEEEEEEECC
T ss_pred             ccccEEEEEEEeccccccCCCCCcCceEEEEeCCeEEEcC
Confidence            99999999999986    5899999999999999999995
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A Back     alignment and structure
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A Back     alignment and structure
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Back     alignment and structure
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} Back     alignment and structure
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Back     alignment and structure
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Back     alignment and structure
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A Back     alignment and structure
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A Back     alignment and structure
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A Back     alignment and structure
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens} Back     alignment and structure
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4 Back     alignment and structure
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A Back     alignment and structure
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A Back     alignment and structure
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1 Back     alignment and structure
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus} Back     alignment and structure
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A Back     alignment and structure
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 428
d2pr9a1277 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin s 1e-104
d2vglm2141 d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat ass 2e-37
d2vgls_142 d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assem 3e-22
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 277 Back     information, alignment and structure

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  308 bits (791), Expect = e-104
 Identities = 113/279 (40%), Positives = 173/279 (62%), Gaps = 14/279 (5%)

Query: 159 VSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLND 218
           + WR EGI+Y++NE+FLDV+ESVN+L++  GQ++ + V G + M++YLSGMPECK G+ND
Sbjct: 1   IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMND 60

Query: 219 RVLLEAQGRS-------TKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYR 271
           ++++E QG+        +  ++I +DD  FHQCVRL++F+++R+ISFIPPDG F+LM YR
Sbjct: 61  KIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYR 120

Query: 272 LSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTS 331
            +  +     V   +    R+++E+ V  +S FK    A  +E+ +P P + +   V   
Sbjct: 121 TTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICM 180

Query: 332 MGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFT 391
            G A+Y    +A+VWKIK   G KE  + AE  L     ++     + PI + FE+P F 
Sbjct: 181 KGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKK--KWARPPISMNFEVP-FA 237

Query: 392 VSGIQVRYLKIIEK----SGYQALPWVRYITMAGEYELR 426
            SG++VRYLK+ E     S +  + WVRYI  +G YE R
Sbjct: 238 PSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 276

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query428
d2pr9a1277 Second domain of Mu2 adaptin subunit (ap50) of ap2 100.0
d2vglm2141 Mu2 adaptin (clathrin coat assembly protein AP50) 100.0
d2vgls_142 Sigma2 adaptin (clathrin coat assembly protein AP1 99.96
d3cpta1116 MEK binding partner 1, MP1 {Human (Homo sapiens) [ 94.23
d2fh5a1129 Signal recognition particle receptor alpha subunit 92.63
d1nrja_155 Srx domain of the signal recognition particle rece 88.3
d1ifqa_127 Sec22b {Mouse (Mus musculus) [TaxId: 10090]} 81.11
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=7.8e-67  Score=500.52  Aligned_cols=266  Identities=42%  Similarity=0.831  Sum_probs=231.6

Q ss_pred             cccccCCCCcccceEEEEEEEeEeEEEeccCcEEEEEEEEEEEEEEEecCCCeEEEEeccchhhhccCC-------CCCC
Q 014251          159 VSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGR-------STKG  231 (428)
Q Consensus       159 ~~wR~~~~~~~~nEI~vdV~E~i~~~~~~~G~v~~~~I~G~I~~~s~LsG~P~~~l~ln~~~~~~~~~~-------~~~~  231 (428)
                      +|||+.|++|++|||||||+|+++|+++++|.+++++|+|+|.|+|+|+|+|+|+|+||++..++.+..       .+..
T Consensus         1 i~WR~~~i~y~~NEi~vDV~E~i~~~~~~~G~~~~~~V~G~I~~~s~LsG~P~~~l~Ln~~~~~~~~~~~~~~~~~~~~~   80 (277)
T d2pr9a1           1 IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGK   80 (277)
T ss_dssp             CTTSCSCCCCSSCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECSSSCEEEEEESBC------------------C
T ss_pred             CCccCCCCcccCCEEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEecCCCCeEEEEecchhhccccccccccccccccc
Confidence            689999999999999999999999999999999999999999999999999999999999887654321       1345


Q ss_pred             ceEEecccceeeeeccccccCCceEEEeCCCCceEEEEEEecCCCCCcEEEEEEEEEccceEEEEEEEeeccCCCcceee
Q 014251          232 KAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSTAT  311 (428)
Q Consensus       232 ~~i~l~d~~fH~cV~~~~~~~~~~l~F~PPdG~f~Lm~Yr~~~~~~P~~~v~~~~~~~~~~~~e~~l~~~~~~~~~~~~~  311 (428)
                      .++.|+||+||+||+++.|+++|.|+|+||||+|+||+||++.+..+|+.+.++++..+++++++.++++++++....++
T Consensus        81 ~~~~l~d~~fH~cV~~~~f~~~~~i~F~PPdG~F~Lm~Y~~~~~~~~P~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~~  160 (277)
T d2pr9a1          81 QSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQ  160 (277)
T ss_dssp             CCBCCSEEEECTTSBCC-----CCEEECCCSEEEEEEEEEECSSCCCCEEEEEEEEEETTTEEEEEEEEEECSCTTCEEE
T ss_pred             CceEccceeeeeccccccccccceEeecCCCCcEEEEEEEcCCCcCCCcEEEEEEEeccCcEEEEEEEEEeccCCCeeee
Confidence            67889999999999999999999999999999999999999877644445578888777779999999999999999999


Q ss_pred             eEEEEecCCCCCCCceEEecceeEEEeCCCCeEEEEeceeCCCcceEEEEEEEecCCCccccCCCCCCceEEEEEeCcee
Q 014251          312 NVEIELPVPADATNPNVRTSMGSARYAPENDALVWKIKSFPGNKEYMLRAEFSLPSITAEEAAPERKAPIRVKFEIPYFT  391 (428)
Q Consensus       312 ~v~v~ip~P~~~~~~~~~~~~G~~~~~~~~~~i~W~I~k~~g~~~~~l~~~~~~~~~~~~~~~~~~~~pi~v~F~ip~~t  391 (428)
                      +|.|+||+|+++..+.++++.|+++|+.++++++|+|++++++++++|++++++++..+...+  .++|++|+|++| ++
T Consensus       161 ~v~I~iP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~I~k~~~~~~~~l~~~~~~~~~~~~~~~--~~~pi~v~F~ip-~t  237 (277)
T d2pr9a1         161 KIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKW--ARPPISMNFEVP-FA  237 (277)
T ss_dssp             EEEEEEECCTTEEEEEEEESSSEEEEEGGGTEEEEEEEEEETTCEEEEEEEEEECCCCSSSCC--CCCCEEEEEEES-SC
T ss_pred             EEEEEeeCCCcccCceEEecCceEEEeccCCEEEEecccccCCccceEEEEEEeccCCCCccc--cCCcEEEEEEec-cc
Confidence            999999999999999999999999999999999999999999999999999999876544444  789999999999 89


Q ss_pred             ccccEEEEEEEEEc----CCCCcccceEEEEEeccEEEEc
Q 014251          392 VSGIQVRYLKIIEK----SGYQALPWVRYITMAGEYELRL  427 (428)
Q Consensus       392 ~SGl~V~~l~v~~~----~~~~~~k~vrY~t~sg~y~~R~  427 (428)
                      +|||+|++|+|.++    ++|+|+|||||+|+||+|++|.
T Consensus       238 ~Sgl~V~~l~v~~~~~~~~~~~~~k~vrY~t~sg~Y~~R~  277 (277)
T d2pr9a1         238 PSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC  277 (277)
T ss_dssp             TTCCCEEEEEEECSSSSCCGGGSEEEEEEEEEEEEEEECC
T ss_pred             ccceEEEEEEEeccccCCCCCCCCCCEEEEEECCCEEECC
Confidence            99999999999873    4689999999999999999994
>d3cpta1 d.110.7.1 (A:3-118) MEK binding partner 1, MP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fh5a1 d.110.4.4 (A:1-129) Signal recognition particle receptor alpha subunit, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nrja_ d.110.4.4 (A:) Srx domain of the signal recognition particle receptor alpha-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ifqa_ d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure