Citrus Sinensis ID: 014257

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------43

MNDNCDNCDTNSLGSWKDAAETNSMGSWKDGTNGGSEPDQEASASSGLAFESHLAETPSPRMSWADMAQEDELEEEGEEEQCKVNKQVNDGVNVLKEESSVSKVVQKPMLSREEREHMRFMHVRRKKDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGEFAGSIPIALPVGSVLVLNGNAADVAKHCVPAVPTKRISITFRKMDESKRPFGFVPEPDLQGIQPLPYDAEKPKIFKSDGLAKKQRVRREPKMDGREHGERSDARSQHHYPGCYQRRPTDKSRVRVNLGN

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHcEEEEEEEEccccEEEEEEccEEccccccEEEEcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccEEEEEEEccccccccccccccccccEEEEEccccEEEEEccccccccccccccccEEEcccccEEEEEccccccccEEccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHcccHcEEEcccEEEEEEEcccEEEEEccEEEEcccccHHHHHHHHHHHHHHHHHHccccccccEEEcccccccccccEEEEEcEEEEccccccccccccccccccccccHHHHHHHHHHHHcccccccccccEEEEEEcccccccccccccccccccEEEEEEcccEEEEEccEcccccccccccEEEEEccccEEEEEEccHHHHHHcccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccHHHHHHcccc

mndncdncdtnslgswkdaaetnsmgswkdgtnggsepdqeasassglafeshlaetpsprmswadmaqedeleeegeeeQCKVNKQVNDGVNVLKEEssvskvvqkpmlsreEREHMRFMHVRRKKDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNemgtkgelkektysapkkwmrgkgritiqfgccynyatdkngnppgilqnepvdplpHLFKVIIRRLVKwhvlpptcvpdscivniyeegdcipphidnhdfvrpfctvsflsecnivfgsnlkvvgagefagsipialpvgsvlvlngnaadvakhcvpavptkrisITFRKmdeskrpfgfvpepdlqgiqplpydaekpkifksdglakkqrvrrepkmdgrehgersdarsqhhypgcyqrrptdksRVRVNLGN

mndncdncdtnslgswkdaAETNSMGSWKDGTNGGSEPDQEASASSGLAFESHLAETPSPRMSWADMAQEDELEEEGEEEQCKVNKQVNdgvnvlkeessvskvvqkpmlsreerehmrfmhvrrkkdficlEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTlnemgtkgelkektysapkkwmrgkgRITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGEFAGSIPIALPVGSVLVLNGNAAdvakhcvpavptkrisitfrkMDESKRPFGFVPEPDLQGIQPlpydaekpkifksdglakkqrvrrepkmdgrehgersdarsqhhypgcyqrrptdksrvrvnlgn

MNDNCDNCDTNSLGSWKDAAETNSMGSWKDGTNGGSEPDQEASASSGLAFESHLAETPSPRMSWADMAQedeleeegeeeQCKVNKQVNDGVNVLkeessvskvvQKPMLSREEREHMRFMHVRRKKDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGEFAGSIPIALPVGSVLVLNGNAADVAKHCVPAVPTKRISITFRKMDESKRPFGFVPEPDLQGIQPLPYDAEKPKIFKSDGLAKKQRVRREPKMDGREHGERSDARSQHHYPGCYQRRPTDKSRVRVNLGN

**********************************************************************************************************************RFMHVRRKKDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGEFAGSIPIALPVGSVLVLNGNAADVAKHCVPAVPTKRISITFRK**************************************************************************************

*******************************************************************************************************************************DFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFG***************PIALPVGSVLVLNGNAADVAKHCVPAVPTKRISITFRKMDESK*********************************************************************************

*********TNSLGSWKDAAETNSMGSWK*******************AFESHLAETPSPRMSWAD****************KVNKQVNDGVNVLKEESSVSKVVQKPMLSREEREHMRFMHVRRKKDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGEFAGSIPIALPVGSVLVLNGNAADVAKHCVPAVPTKRISITFRKMDESKRPFGFVPEPDLQGIQPLPYDAEKPKIFKSD*******************************PGCYQRRPTDKSRVRVNLGN

**************************************************************************************************************SREEREHMRFMHVRRKKDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGEFAGSIPIALPVGSVLVLNGNAADVAKHCVPAVPTKRISITFRKMDESKRPFGFVPEPDLQGIQ******************************************************************

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		428	2.2.26 [Sep-21-2011]
Q66JG8		358	RNA demethylase ALKBH5 OS	yes	no	0.425	0.508	0.32	5e-13
D3ZKD3		395	RNA demethylase ALKBH5 OS	yes	no	0.425	0.460	0.315	5e-13
Q3TSG4		395	RNA demethylase ALKBH5 OS	yes	no	0.425	0.460	0.315	7e-13
Q6P6C2		394	RNA demethylase ALKBH5 OS	yes	no	0.425	0.461	0.315	8e-13
E1BH29		394	RNA demethylase ALKBH5 OS	yes	no	0.425	0.461	0.315	1e-12
Q6GPB5		360	RNA demethylase ALKBH5 OS	N/A	no	0.329	0.391	0.339	2e-12
Q08BA6		352	RNA demethylase ALKBH5 OS	yes	no	0.427	0.519	0.313	3e-12
Q5UR03		210	Uncharacterized protein L	N/A	no	0.273	0.557	0.268	0.0008

>sp\|Q66JG8\|ALKB5_XENTR RNA demethylase ALKBH5 OS=Xenopus tropicalis GN=alkbh5 PE=2 SV=1	Back alignment and function desciption

 Score = 75.9 bits (185), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 91/200 (45%), Gaps = 18/200 (9%)

Query: 152 IFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCCYNYATDKNG 211
           +FS  E  RI   +  +     KG  +E T        R   R    FG  Y Y      
Sbjct: 60  LFSPDECARIEAKIDEVVSRAEKGLYREHTVD------RAPLRNKYFFGEGYTYGAQLQR 113

Query: 212 NPPGILQNEP---VDPLPHLF-KVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHID 267
             PG  +  P   VD +P    +++IRRLV+  V+P   V +S ++N Y+ G CI  H+D
Sbjct: 114 RGPGQERLYPKGEVDEIPAWVNELVIRRLVEHRVIPEGFV-NSAVINDYQPGGCIVSHVD 172

Query: 268 N-HDFVRPFCTVSFLSECNIVFGS--NLKVVGAGEFAGSIPIALPVGSVLVLNGNAADVA 324
             H F RP  +VSF S+  + FG     K +   E    +P+    GSV VL+G AAD  
Sbjct: 173 PIHIFERPIVSVSFFSDSALCFGCKFQFKPIRVSEPVFFLPVQR--GSVTVLSGYAADEI 230

Query: 325 KHCV--PAVPTKRISITFRK 342
            HC+    +  +R  +  RK
Sbjct: 231 THCIRPQDIKERRAVVILRK 250

Probable dioxygenase that requires molecular oxygen, alpha-ketoglutarate and iron.
Xenopus tropicalis (taxid: 8364)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -

>sp\|D3ZKD3\|ALKB5_RAT RNA demethylase ALKBH5 OS=Rattus norvegicus GN=Alkbh5 PE=3 SV=1	Back alignment and function description

>sp\|Q3TSG4\|ALKB5_MOUSE RNA demethylase ALKBH5 OS=Mus musculus GN=Alkbh5 PE=1 SV=2	Back alignment and function description

>sp\|Q6P6C2\|ALKB5_HUMAN RNA demethylase ALKBH5 OS=Homo sapiens GN=ALKBH5 PE=1 SV=2	Back alignment and function description

>sp\|E1BH29\|ALKB5_BOVIN RNA demethylase ALKBH5 OS=Bos taurus GN=ALKBH5 PE=3 SV=1	Back alignment and function description

>sp\|Q6GPB5\|ALKB5_XENLA RNA demethylase ALKBH5 OS=Xenopus laevis GN=alkbh5 PE=2 SV=1	Back alignment and function description

>sp\|Q08BA6\|ALKB5_DANRE RNA demethylase ALKBH5 OS=Danio rerio GN=alkbh5 PE=2 SV=1	Back alignment and function description

>sp\|Q5UR03\|YL905_MIMIV Uncharacterized protein L905 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L905 PE=4 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		428
225431153		510	PREDICTED: uncharacterized protein LOC10	0.985	0.827	0.687	1e-161
297735021		547	unnamed protein product [Vitis vinifera]	0.985	0.771	0.687	1e-160
147857702		849	hypothetical protein VITISV_020466 [Viti	0.985	0.497	0.687	1e-160
449434166		499	PREDICTED: uncharacterized protein LOC10	0.934	0.801	0.685	1e-153
255579797		511	conserved hypothetical protein [Ricinus	0.908	0.761	0.679	1e-146
356552441		522	PREDICTED: uncharacterized protein LOC10	0.852	0.699	0.665	1e-145
356562125		520	PREDICTED: uncharacterized protein LOC10	0.838	0.690	0.672	1e-142
145328752		433	2-oxoglutarate (2OG) and Fe(II)-dependen	0.815	0.806	0.661	1e-132
15227938		507	2-oxoglutarate (2OG) and Fe(II)-dependen	0.815	0.688	0.661	1e-132
297836514		500	oxidoreductase [Arabidopsis lyrata subsp	0.808	0.692	0.661	1e-129

>gi\|225431153\|ref\|XP_002268446.1\| PREDICTED: uncharacterized protein LOC100250563 [Vitis vinifera]	Back alignment and taxonomy information

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 297/432 (68%), Positives = 344/432 (79%), Gaps = 10/432 (2%)

Query: 1   MNDNCDNCDTNSLGSWKDA-AETNSMGSWKDGTNGGSEPDQEASASSGLAFESHLAETPS 59
           ++ +CDNCD+NSLGSWKD  A+TNS+GS+KD  N  SEP  EAS S  LA ES   ETPS
Sbjct: 85  IDSHCDNCDSNSLGSWKDNDADTNSVGSFKDEVNEWSEPVPEASTSE-LASESPSIETPS 143

Query: 60  PRMSWADMAQEDELEEEGEEEQCKVNKQVNDGVNVLKEESSVSKVVQKPMLSREEREHMR 119
           PR+SWADMAQEDELEEE E E  K +   N        E  VSKV +K  L RE+RE++R
Sbjct: 144 PRISWADMAQEDELEEEEEHEANKRSIDENSSTG----EVGVSKVPRKAELPREQREYIR 199

Query: 120 FMHVRRKKDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKE 179
           F +V+RKKDFICLE++KGK VNIL GLELH GIFSAAEQKRIVDF++ L EMG  G+LKE
Sbjct: 200 FRNVQRKKDFICLERVKGKFVNILDGLELHVGIFSAAEQKRIVDFIYELQEMGRNGQLKE 259

Query: 180 KTYSAPKKWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKW 239
           +TYSAP+KWMRGKGR+TIQFGCCYNYATDKNGNPPGILQNE VDP+P LFKVIIRRLV+W
Sbjct: 260 RTYSAPQKWMRGKGRVTIQFGCCYNYATDKNGNPPGILQNEVVDPIPPLFKVIIRRLVRW 319

Query: 240 HVLPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGE 299
           HVLPP+CVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSEC+IVFG+NLK++GAGE
Sbjct: 320 HVLPPSCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECDIVFGTNLKILGAGE 379

Query: 300 FAGSIPIALPVGSVLVLNGNAADVAKHCVPAVPTKRISITFRKMDESKRPFGFVPEPDLQ 359
           F G   I LPVGSVLVLNGN ADVAKHCVPAVP+KRISITFRKMDESKRP G++PEPDLQ
Sbjct: 380 FVGPFAIPLPVGSVLVLNGNGADVAKHCVPAVPSKRISITFRKMDESKRPIGYLPEPDLQ 439

Query: 360 GIQPLPYDAEKPKIF---KSDGLAKKQRVRREPKMDGREHGERSDARSQHHYPGCYQRRP 416
           G+QP+ Y+ ++ KI    K +    +Q VRRE  ++ R   ER D  S  HY     R P
Sbjct: 440 GLQPVSYEMDRSKISNPQKPERRMNRQAVRREGSVEARGFMERGD-HSGSHYSSRAPRGP 498

Query: 417 TDKSRVRVNLGN 428
            ++ R+R+NL +
Sbjct: 499 ANRRRIRMNLAD 510

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297735021\|emb\|CBI17383.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147857702\|emb\|CAN80815.1\| hypothetical protein VITISV_020466 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449434166\|ref\|XP_004134867.1\| PREDICTED: uncharacterized protein LOC101203292 [Cucumis sativus] gi\|449531418\|ref\|XP_004172683.1\| PREDICTED: uncharacterized protein LOC101225118 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255579797\|ref\|XP_002530736.1\| conserved hypothetical protein [Ricinus communis] gi\|223529700\|gb\|EEF31642.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|356552441\|ref\|XP_003544576.1\| PREDICTED: uncharacterized protein LOC100797674 [Glycine max]	Back alignment and taxonomy information

>gi\|356562125\|ref\|XP_003549324.1\| PREDICTED: uncharacterized protein LOC100787321 [Glycine max]	Back alignment and taxonomy information

>gi|145328752|ref|NP_001077911.1| 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana] gi|334184285|ref|NP_001189546.1| 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana] gi|330251613|gb|AEC06707.1| 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana] gi|330251614|gb|AEC06708.1| 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi|15227938|ref|NP_179387.1| 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana] gi|4406821|gb|AAD20129.1| hypothetical protein [Arabidopsis thaliana] gi|34365749|gb|AAQ65186.1| At2g17970 [Arabidopsis thaliana] gi|51970124|dbj|BAD43754.1| hypothetical protein [Arabidopsis thaliana] gi|330251612|gb|AEC06706.1| 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|297836514\|ref\|XP_002886139.1\| oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi\|297331979\|gb\|EFH62398.1\| oxidoreductase [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		428
TAIR\|locus:2060964		507	AT2G17970 [Arabidopsis thalian	0.890	0.751	0.607	3.9e-124
TAIR\|locus:2135124		520	AT4G36090 [Arabidopsis thalian	0.915	0.753	0.582	2e-118
TAIR\|locus:2028486		331	AT1G48980 [Arabidopsis thalian	0.588	0.761	0.714	2.2e-98
TAIR\|locus:2139345		569	AT4G02940 [Arabidopsis thalian	0.511	0.384	0.321	1.7e-28
TAIR\|locus:2066385		438	AT2G48080 [Arabidopsis thalian	0.539	0.527	0.315	1e-27
TAIR\|locus:2006717		601	AT1G14710 "AT1G14710" [Arabido	0.553	0.394	0.321	3.4e-27
UNIPROTKB\|F1NIA5		375	ALKBH5 "Uncharacterized protei	0.422	0.482	0.338	1.9e-13
ZFIN\|ZDB-GENE-061013-602		352	alkbh5 "alkB, alkylation repai	0.602	0.732	0.287	4.6e-13
UNIPROTKB\|Q66JG8		358	alkbh5 "RNA demethylase ALKBH5	0.598	0.715	0.304	6.3e-13
RGD\|1309496		395	Alkbh5 "alkB, alkylation repai	0.422	0.458	0.328	2e-12

TAIR\|locus:2060964 AT2G17970 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1220 (434.5 bits), Expect = 3.9e-124, P = 3.9e-124
 Identities = 243/400 (60%), Positives = 288/400 (72%)

Query:     2 NDNCDNCDTNSLGSWKDAAETNSMGSWKDGTN--GGSEPDQEASASSGLAFESHLAETPS 59
             N+  DN D  S     +  + +S+GSWK G+    GS P+     SS L     + ET S
Sbjct:    82 NNVDDNYDEKSENG--EDCDNHSLGSWK-GSEIVFGSFPED---FSSVLQSRPAVVETAS 135

Query:    60 PRMSWADMAQXXXXXXXXXXXQCKVNKQVNDGVNVLXXXXXXXXXXQKPMLSREEREHMR 119
             PRM WADMAQ           + +       G +            +KP LSR++RE++R
Sbjct:   136 PRMRWADMAQEDEFDEEEEEEE-EERDSSRKGFDA-----SSMKTPEKPKLSRDQRENLR 189

Query:   120 FMHVRRKKDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKE 179
              ++V+RKKDFICLE++KGKIVN+L GLELH G+FSA EQKRIVD V+ L E G +GELK+
Sbjct:   190 LINVKRKKDFICLERVKGKIVNVLDGLELHTGVFSAVEQKRIVDQVYQLQEKGRRGELKK 249

Query:   180 KTYSAPKKWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKW 239
             +T++AP KWMRGKGR TIQFGCCYNYA D+ GNPPGILQ E VDPLPHLFKVIIR+L+KW
Sbjct:   250 RTFTAPHKWMRGKGRETIQFGCCYNYAPDRAGNPPGILQREEVDPLPHLFKVIIRKLIKW 309

Query:   240 HVLPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGE 299
             HVLPPTCVPDSCIVNIY+EGDCIPPHIDNHDF+RPFCT+SFLSEC+I+FGSNLKV G G+
Sbjct:   310 HVLPPTCVPDSCIVNIYDEGDCIPPHIDNHDFLRPFCTISFLSECDILFGSNLKVEGPGD 369

Query:   300 FAGSIPIALPVGSVLVLNGNAADVAKHCVPAVPTKRISITFRKMDESKRPFGFVPEPDLQ 359
             F+GS  I LPVGSVLVLNGN ADVAKHCVPAVPTKRISITFRKMDESKRP  F PEPDLQ
Sbjct:   370 FSGSYSIPLPVGSVLVLNGNGADVAKHCVPAVPTKRISITFRKMDESKRPVWFTPEPDLQ 429

Query:   360 GIQPLPYDAEKPKIFKSDGLAKKQRVRREPKMDGREHGER 399
             GI+PLP D  +     S   ++  R+      + R HG R
Sbjct:   430 GIEPLPLDLNR-----SGSTSRFSRLNNHNGTNQRGHGRR 464

GO:0005634 "nucleus" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR\|locus:2135124 AT4G36090 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2028486 AT1G48980 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2139345 AT4G02940 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2066385 AT2G48080 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2006717 AT1G14710 "AT1G14710" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NIA5 ALKBH5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-061013-602 alkbh5 "alkB, alkylation repair homolog 5 (E. coli)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q66JG8 alkbh5 "RNA demethylase ALKBH5" [Xenopus (Silurana) tropicalis (taxid:8364)]	Back alignment and assigned GO terms

RGD\|1309496 Alkbh5 "alkB, alkylation repair homolog 5 (E. coli)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.14.11.4	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00036792001	SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (510 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		428
pfam13532		190	pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase su	6e-33
pfam03171		96	pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe	3e-07
COG3145		194	COG3145, AlkB, Alkylated DNA repair protein [DNA r	8e-04

>gnl\|CDD\|222204 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase superfamily	Back alignment and domain information

 Score =  122 bits (308), Expect = 6e-33
 Identities = 53/207 (25%), Positives = 73/207 (35%), Gaps = 27/207 (13%)

Query: 145 GLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCCYN 204
           GL L  G  SA EQ  ++  +              K  S         G +T   G  Y 
Sbjct: 1   GLVLLPGFLSAEEQAALLRELLAEAPWRQPMTPGGKPMSVRMTNCGPLGWVTD--GPGYR 58

Query: 205 YATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPP 264
           Y+          +  EP  P P +   +  RL      P    P++C+VN Y  G  +  
Sbjct: 59  YSGTP-------VTGEPWPPFPAVLLQLAERLAAAAGPPG-FEPNACLVNFYRPGARMGL 110

Query: 265 HIDNH--DFVRPFCTVSFLSECNIVFGSNLKVVGAGEFAGSIPIALPVGSVLVLNGNAAD 322
           H D    DF  P  +VS        FG      G      +I + L  G VLV+ G +  
Sbjct: 111 HQDKDELDFGAPIVSVSLGDPALFRFG------GKTRDDPTIALPLESGDVLVMGGPSRL 164

Query: 323 VAKHCVPAVPTK--------RISITFR 341
              H VP +           RI++TFR
Sbjct: 165 AY-HGVPRIKPGTHPLLGGGRINLTFR 190

Length = 190

>gnl\|CDD\|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily	Back alignment and domain information

>gnl\|CDD\|225687 COG3145, AlkB, Alkylated DNA repair protein [DNA replication, recombination, and repair]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		428
KOG4176		323	consensus Uncharacterized conserved protein [Funct	100.0
PF13532		194	2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily;	100.0
PRK15401		213	alpha-ketoglutarate-dependent dioxygenase AlkB; Pr	99.97
KOG3200		224	consensus Uncharacterized conserved protein [Funct	99.94
TIGR00568		169	alkb DNA alkylation damage repair protein AlkB. Pr	99.93
COG3145		194	AlkB Alkylated DNA repair protein [DNA replication	99.87
KOG3959		306	consensus 2-Oxoglutarate- and iron-dependent dioxy	99.82
KOG2731		378	consensus DNA alkylation damage repair protein [RN	98.41
PF03171		98	2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent	97.83
PRK05467		226	Fe(II)-dependent oxygenase superfamily protein; Pr	97.65
smart00702		178	P4Hc Prolyl 4-hydroxylase alpha subunit homologues	97.48
PF13640		100	2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily;	96.27
PLN00052		310	prolyl 4-hydroxylase; Provisional	96.19
PF12933		253	FTO_NTD: FTO catalytic domain; InterPro: IPR024367	94.86
PF12851		171	Tet_JBP: Oxygenase domain of the 2OGFeDO superfami	94.36
TIGR01762		288	chlorin-enz chlorinating enzymes. This model repre	93.36
PF09859		173	Oxygenase-NA: Oxygenase, catalysing oxidative meth	93.18
COG3128		229	PiuC Uncharacterized iron-regulated protein [Funct	92.81
KOG1591		289	consensus Prolyl 4-hydroxylase alpha subunit [Amin	90.56
PF13759		101	2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB	84.0
TIGR02408		277	ectoine_ThpD ectoine hydroxylase. Both ectoine and	82.46

>KOG4176 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Probab=100.00  E-value=3.9e-39  Score=321.64  Aligned_cols=239  Identities=43%  Similarity=0.738  Sum_probs=220.4

Q ss_pred             cCCCCCChhhhhcce-eeeeccCccchhhhcccCeeeecCCceEEEcCCCCHHHHHHHHHHHHhhhhccccccccceeee
Q 014257          105 VQKPMLSREEREHMR-FMHVRRKKDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYS  183 (428)
Q Consensus       105 ~~~~~l~~~~~e~~r-~~~vk~~k~F~~~e~v~g~~vn~~pGL~li~~FIS~eEe~~Ll~~I~e~~~~~~~~~L~~~t~~  183 (428)
                      .....+++++++..+ ...++..+.|.+.|...+..++.+.|+.++++.+++.|+..|.+.|.++..++..+.+.+.+++
T Consensus        76 ~~~~~~~e~~~~~~~~~~~~~~i~~f~~~e~~~~~~~n~~~~~~l~~~~~~~~e~~~~~d~V~el~e~~l~~~~~~e~~~  155 (323)
T KOG4176|consen   76 LFRELYSEESRLRYRTDANLKAIKGFGEQEQLKGQSVNVVEGLKLRDEVFIPGELSLIVDFVTELEEKGLIGALVDETFT  155 (323)
T ss_pred             hhhhhchhhhhhhhhhhccccccccccceeeccchhhhhhhhheeeccccChhhceehhhhhhhhHHhhhhcccccccce
Confidence            345567888999998 7889999999999999999999999999999999999999999999998888888888777776


Q ss_pred             CCCceecCCCcEEEEcCCccccCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHccCCCCCCCCCEEEEeecCCCCCCC
Q 014257          184 APKKWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIP  263 (428)
Q Consensus       184 ~~~kW~~~k~Rrv~~fG~~y~Y~~~~~~~~p~~~~~~~~~piP~~L~~Li~Rl~~~~iip~~~~PDq~iVN~Y~pG~gI~  263 (428)
                      .   |+++++|+++|||++|.|.+++++..      .+++|||+.++.+++|++.+.+||+  .||||+||+|++|++|+
T Consensus       156 ~---~~~gk~R~~iq~G~~f~y~~~~~d~~------~~~~piPs~~~~ii~rlv~~~~ip~--~pd~~~iN~Ye~G~~i~  224 (323)
T KOG4176|consen  156 Y---QESGKHREVIQLGYPFDYRTNNVDES------KPVDPIPSLFKSIIDRLVSWRVIPE--RPDQCTINFYEPGDGIP  224 (323)
T ss_pred             e---eccccceeeeecCceeccCCCccccc------CccCCCchHHHHHHHHhhhhccCCC--CCCeeEEEeeCCCCCCC
Confidence            5   88899999999999999999877633      3388999999999999999999997  79999999999999999


Q ss_pred             CCCCCCCCCCCEEEEecCCcceeeeeccccccCCCCCCccEEEEcCCCcEEEeccccccccccccCCCCCCeEEEEeeec
Q 014257          264 PHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGEFAGSIPIALPVGSVLVLNGNAADVAKHCVPAVPTKRISITFRKM  343 (428)
Q Consensus       264 pHvD~~~f~~pI~SLSLGS~~vm~F~~~~~~~~~g~~~~~~~V~Lp~GSLLVMsGesRy~wkH~Ip~~r~~RISLTFR~v  343 (428)
                      ||+|++.|++||++|||.|+|+|.|++.+..+..+.+.+...+.|+.|+++||.|.+....+|++...+.+|||||||++
T Consensus       225 ph~~~~~F~~Pi~slS~lSe~~m~Fg~~~~~~~~~~~~g~~s~p~~~g~~lvi~~~~ad~~~~~~~~~~~kRisitfrki  304 (323)
T KOG4176|consen  225 PHIDHSAFLDPISSLSFLSECTMEFGHGLLSDNIGNFRGSLSLPLRYGSVLVIRGRSADVAPHCIRPSRNKRISITFRKI  304 (323)
T ss_pred             CCCChHHhcCceEEEEeecceeEEecccccccCccccccccccccccCeEEEeCCCcccccccccCCCCCceEEEEEEEe
Confidence            99977779999999999999999999998887777788899999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCC
Q 014257          344 DESKRPFGFVP  354 (428)
Q Consensus       344 ~~~~c~c~~~~  354 (428)
                      ++.+|+|++++
T Consensus       305 ~~~~~~~~~~~  315 (323)
T KOG4176|consen  305 RPDPCFCEPPP  315 (323)
T ss_pred             ccCCCCCCCCC
Confidence            99999999977

>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A	Back alignment and domain information

>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional	Back alignment and domain information

>KOG3200 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>TIGR00568 alkb DNA alkylation damage repair protein AlkB	Back alignment and domain information

>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]	Back alignment and domain information

>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]	Back alignment and domain information

>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit	Back alignment and domain information

>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional	Back alignment and domain information

>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues	Back alignment and domain information

>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A	Back alignment and domain information

>PLN00052 prolyl 4-hydroxylase; Provisional	Back alignment and domain information

>PF12933 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 Alpha-ketoglutarate-dependent dioxygenase FTO, also known as Fat mass and obesity-associated protein, is a nucleus protein which belongs to the FTO family	Back alignment and domain information

>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []	Back alignment and domain information

>TIGR01762 chlorin-enz chlorinating enzymes	Back alignment and domain information

>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function	Back alignment and domain information

>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]	Back alignment and domain information

>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]	Back alignment and domain information

>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A	Back alignment and domain information

>TIGR02408 ectoine_ThpD ectoine hydroxylase	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		428
3tht_A		345	Alkylated DNA repair protein ALKB homolog 8; struc	2e-25
3i3q_A		211	Alpha-ketoglutarate-dependent dioxygenase ALKB; be	2e-23
2iuw_A		238	Alkylated repair protein ALKB homolog 3; oxidoredu	8e-11
3s57_A		204	Alpha-ketoglutarate-dependent dioxygenase ALKB HO;	1e-07

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Length = 345	Back alignment and structure

 Score =  105 bits (263), Expect = 2e-25
 Identities = 47/241 (19%), Positives = 82/241 (34%), Gaps = 54/241 (22%)

Query: 131 CLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMR 190
            ++  + +   +  GL + E I S+ E+K +++ V    +   +                
Sbjct: 98  KVQWKELRPQALPPGLMVVEEIISSEEEKMLLESVDWTEDTDNQN-----------SQKS 146

Query: 191 GKGRITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDS 250
            K R    FG  ++Y    N +    L     D         + + ++   +     PD 
Sbjct: 147 LKHRRVKHFGYEFHYEN-NNVDKDKPLSGGLPDICESF----LEKWLRKGYIKHK--PDQ 199

Query: 251 CIVNIYEEGDCIPPHIDNH-DFVRPFCTVSFLSECNIVFGSNLKVVGAGEFAGSIPIALP 309
             +N YE G  IP HID H  F     ++S  SE  + F     +        ++P+ LP
Sbjct: 200 MTINQYEPGQGIPAHIDTHSAFEDEIVSLSLGSEIVMDFKHPDGI--------AVPVMLP 251

Query: 310 VGSVLVLNGNAADVAKHCVPAVPT---------------------------KRISITFRK 342
             S+LV+ G +  +  H +                                 R S TFRK
Sbjct: 252 RRSLLVMTGESRYLWTHGITCRKFDTVQASESLKSGIITSDVGDLTLSKRGLRTSFTFRK 311

Query: 343 M 343
           +
Sbjct: 312 V 312

PyMOL of 3tht

>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Length = 211	Back alignment and structure

>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Length = 238	Back alignment and structure

>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Length = 204	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		428
3tht_A		345	Alkylated DNA repair protein ALKB homolog 8; struc	100.0
2iuw_A		238	Alkylated repair protein ALKB homolog 3; oxidoredu	100.0
3i3q_A		211	Alpha-ketoglutarate-dependent dioxygenase ALKB; be	99.97
3s57_A		204	Alpha-ketoglutarate-dependent dioxygenase ALKB HO;	99.97
2jig_A		224	Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {	97.12
3lfm_A		495	Protein FTO; FAT MASS and obesity associated (FTO)	96.86
3dkq_A		243	PKHD-type hydroxylase SBAL_3634; putative oxygenas	96.75
3itq_A		216	Prolyl 4-hydroxylase, alpha subunit domain protei;	96.62
2hbt_A		247	EGL nine homolog 1; prolyl hydroxylase, hypoxia in	96.26
2rg4_A		216	Uncharacterized protein; rhodobacterales, oceanico	93.18
2a1x_A		308	Phytanoyl-COA dioxygenase; beta jelly roll, double	89.37
2fct_A		313	Syringomycin biosynthesis enzyme 2; mononuclear ir	87.88
3kt7_A		633	PKHD-type hydroxylase TPA1; double-stranded beta h	84.04

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*	Back alignment and structure

Probab=100.00  E-value=4.2e-41  Score=339.47  Aligned_cols=195  Identities=25%  Similarity=0.380  Sum_probs=149.0

Q ss_pred             eeecCCceEEEcCCCCHHHHHHHHHHHHhhhhccccccccceeeeCCCceecCCCcEEEEcCCccccCCCCCCCCCCCCC
Q 014257          139 IVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCCYNYATDKNGNPPGILQ  218 (428)
Q Consensus       139 ~vn~~pGL~li~~FIS~eEe~~Ll~~I~e~~~~~~~~~L~~~t~~~~~kW~~~k~Rrv~~fG~~y~Y~~~~~~~~p~~~~  218 (428)
                      ...+|+||.|+++|||++||++|++.|.+.+..   ..+        .+|...++|++++||+.|+|++....      .
T Consensus       106 ~~~lp~Gl~~~p~fis~~Ee~~Ll~~i~w~~~~---~~~--------~~~~~l~~Rr~~~yG~~Y~Ys~~~~~------~  168 (345)
T 3tht_A          106 PQALPPGLMVVEEIISSEEEKMLLESVDWTEDT---DNQ--------NSQKSLKHRRVKHFGYEFHYENNNVD------K  168 (345)
T ss_dssp             CCSCCTTEEEETTCSCHHHHHHHHTTCC---------------------------CEEECCC------------------
T ss_pred             cccCCCceEEEcCcCCHHHHHHHHHhcccCCcc---ccc--------cCcccccCceEEEECCcccccccccc------c
Confidence            456799999999999999999999888754421   111        23444578999999999999876432      2


Q ss_pred             CCCC-CCCcHHHHHHHHHHHHccCCCCCCCCCEEEEeecCCCCCCCCCCCCCC-CCCCEEEEecCCcceeeeeccccccC
Q 014257          219 NEPV-DPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHD-FVRPFCTVSFLSECNIVFGSNLKVVG  296 (428)
Q Consensus       219 ~~~~-~piP~~L~~Li~Rl~~~~iip~~~~PDq~iVN~Y~pG~gI~pHvD~~~-f~~pI~SLSLGS~~vm~F~~~~~~~~  296 (428)
                      ..+. .+||++|..|++|+.+.++++  ..||+|+||+|.+|++|+||+|.+. |+++|++||||++++|.|++.     
T Consensus       169 ~~p~p~~~P~~L~~l~~r~~~~~~~~--~~~n~~lvN~Y~~G~~I~~H~D~~~~~~~~I~slSLG~~~~f~f~~~-----  241 (345)
T 3tht_A          169 DKPLSGGLPDICESFLEKWLRKGYIK--HKPDQMTINQYEPGQGIPAHIDTHSAFEDEIVSLSLGSEIVMDFKHP-----  241 (345)
T ss_dssp             ------CCCHHHHHHHHHHHHHTSCS--SCCSEEEEEEECTTCCEEEECCCTTTBCSCEEEEEESSCEEEEEECT-----
T ss_pred             CCCCCcCcCHHHHHHHHHHHhcccCC--CCCCEEEEEEecCCCCEeeccCCchhcCCeEEEEECCCceeEEEccC-----
Confidence            2333 579999999999998777653  6899999999999999999999987 999999999999999999973     


Q ss_pred             CCCCCccEEEEcCCCcEEEeccccccccccccCCC---------------------------CCCeEEEEeeeccCCCCC
Q 014257          297 AGEFAGSIPIALPVGSVLVLNGNAADVAKHCVPAV---------------------------PTKRISITFRKMDESKRP  349 (428)
Q Consensus       297 ~g~~~~~~~V~Lp~GSLLVMsGesRy~wkH~Ip~~---------------------------r~~RISLTFR~v~~~~c~  349 (428)
                         .+..++|.|++||||||.|++|+.|+|+|+++                           |++|||||||+|++++|+
T Consensus       242 ---~~~~~~l~L~~gsLlvM~G~~r~~w~H~I~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~r~~RiSlT~R~v~~~~c~  318 (345)
T 3tht_A          242 ---DGIAVPVMLPRRSLLVMTGESRYLWTHGITCRKFDTVQASESLKSGIITSDVGDLTLSKRGLRTSFTFRKVRQTPCN  318 (345)
T ss_dssp             ---TSCEEEEEECTTEEEEECTHHHHTSEEEECCCSEEEEESGGGSSCEECCSSSSCEEEEECCCEEEEEEECBCSSCCC
T ss_pred             ---CCceEEEEcCCCcEEEEChHHhhceEccCCcccCCccCcccccccccccccCCCceeccCCCEEEEEEEecCCCCcC
Confidence               23578999999999999999999999999861                           778999999999999999


Q ss_pred             CCCCCCCCCCC
Q 014257          350 FGFVPEPDLQG  360 (428)
Q Consensus       350 c~~~~~~d~~~  360 (428)
                      |+|+.+||+|+
T Consensus       319 C~~~~~cd~~~  329 (345)
T 3tht_A          319 CSYPLVCDSQR  329 (345)
T ss_dssp             CSCTTTCTTTT
T ss_pred             CCCCCcccCCC
Confidence            99999999996

PyMOL of 3tht

>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10	Back alignment and structure

>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ...	Back alignment and structure

>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*	Back alignment and structure

>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A	Back alignment and structure

>3lfm_A Protein FTO; FAT MASS and obesity associated (FTO) protein, Fe2+/2-oxoGlu (2-OG)-dependent oxidative DNA/RNA demethylases, oxidoreduc; HET: 3DT OGA; 2.50A {Homo sapiens}	Back alignment and structure

>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155}	Back alignment and structure

>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str}	Back alignment and structure

>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A*	Back alignment and structure

>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A	Back alignment and structure

>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9	Back alignment and structure

>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A*	Back alignment and structure

>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		428
d2fdia1		200	b.82.2.10 (A:15-214) Alkylated DNA repair protein	2e-18
d2iuwa1		210	b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo s	4e-16

>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Length = 200	Back information, alignment and structure


class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: Alkylated DNA repair protein AlkB
species: Escherichia coli [TaxId: 562]

 Score = 81.3 bits (200), Expect = 2e-18
 Identities = 38/207 (18%), Positives = 72/207 (34%), Gaps = 37/207 (17%)

Query: 153 FSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMR--GKGRITIQFGCC--YNYATD 208
           F+    ++++             ++ +    +P + M   G   +++    C    + T 
Sbjct: 11  FAFNAAEQLIR------------DINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTH 58

Query: 209 KNGNPPGILQ---NEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPH 265
           + G     +    N+P   +P  F  + +R       P    PD+C++N Y  G  +  H
Sbjct: 59  RQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDF-QPDACLINRYAPGAKLSLH 117

Query: 266 IDN--HDFVRPFCTVSFLSECNIVFGSNLKVVGAGEFAGSIPIALPVGSVLVLNGNAADV 323
            D    D   P  +VS        FG      G         + L  G V+V  G  + +
Sbjct: 118 QDKDEPDLRAPIVSVSLGLPAIFQFG------GLKRNDPLKRLLLEHGDVVVWGG-ESRL 170

Query: 324 AKHCVPAV--------PTKRISITFRK 342
             H +  +           R ++TFR+
Sbjct: 171 FYHGIQPLKAGFHPLTIDCRYNLTFRQ 197

PyMOL of d2fdia1

>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 210	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		428
d2iuwa1		210	AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]	99.97
d2fdia1		200	Alkylated DNA repair protein AlkB {Escherichia col	99.97
d2fcta1		308	Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudom	94.84
d2a1xa1		296	Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapie	93.22

>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: AlkB homolog 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.3e-32  Score=253.25  Aligned_cols=182  Identities=19%  Similarity=0.266  Sum_probs=133.9

Q ss_pred             CCceEEEcCCCCHHHHHHHHHHHHh-hhhccccccccceeeeCCCceecCCCcEEEEcC-CccccCCCCCCCCCCCCCCC
Q 014257          143 LAGLELHEGIFSAAEQKRIVDFVHT-LNEMGTKGELKEKTYSAPKKWMRGKGRITIQFG-CCYNYATDKNGNPPGILQNE  220 (428)
Q Consensus       143 ~pGL~li~~FIS~eEe~~Ll~~I~e-~~~~~~~~~L~~~t~~~~~kW~~~k~Rrv~~fG-~~y~Y~~~~~~~~p~~~~~~  220 (428)
                      ++||.|++||||++|++.|++.|.. .++......       ..+++.. ..|.+.++| ..|.|...         ...
T Consensus        18 ~~~l~y~p~fLs~~e~~~Ll~~L~~e~~w~~~~~~-------~~g~~~~-~pR~~~~~~d~~y~y~~~---------~~~   80 (210)
T d2iuwa1          18 VSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGI-------REDITYQ-QPRLTAWYGELPYTYSRI---------TME   80 (210)
T ss_dssp             CEEEEEETTSSCHHHHHHHHHHHHHHSCCBCCEEE-------SSSCEEE-CSSEEEEEECCCTTSCHH---------HHC
T ss_pred             cceEEEECCcCCHHHHHHHHHHHHhhCCcccccee-------ccCcccc-eeeeeEEecCcCcccccc---------ccc
Confidence            4579999999999999999999864 444322111       1223332 356666665 45555432         112


Q ss_pred             CCCCCcHHHHHHHHHHHHccCCCCCCCCCEEEEeecC-CCCCCCCCCCCCC-C--CCCEEEEecCCcceeeeeccccccC
Q 014257          221 PVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYE-EGDCIPPHIDNHD-F--VRPFCTVSFLSECNIVFGSNLKVVG  296 (428)
Q Consensus       221 ~~~piP~~L~~Li~Rl~~~~iip~~~~PDq~iVN~Y~-pG~gI~pHvD~~~-f--~~pI~SLSLGS~~vm~F~~~~~~~~  296 (428)
                      +..+||++|..|.+++.+....    .+|+|+||.|. +|++|+||+|++. |  +.+|++||||++|+|.|++......
T Consensus        81 ~~~~~~~~l~~l~~~~~~~~~~----~~~~~~ln~Y~~~~~~I~~H~D~~~~~~~~~~I~slSlG~~~~~~~r~~~~~~~  156 (210)
T d2iuwa1          81 PNPHWHPVLRTLKNRIEENTGH----TFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEE  156 (210)
T ss_dssp             CBSSCCHHHHHHHHHHHHHHSC----CCCEEEEEEECSTTCCEEEECCCCGGGCSSCCEEEEEEESCEEEEEEECCC---
T ss_pred             cCCCCcHHHHHHHHhhhhhcCc----cchhhhhhccccCCCccccCcCCchhcccCCceeEEeeCCceEEEEcccccccc
Confidence            3467999999999999876543    46788888775 5679999999987 6  4679999999999999986422211


Q ss_pred             C--CCCCccEEEEcCCCcEEEeccccccccccccCC---CCCCeEEEEeeeccC
Q 014257          297 A--GEFAGSIPIALPVGSVLVLNGNAADVAKHCVPA---VPTKRISITFRKMDE  345 (428)
Q Consensus       297 ~--g~~~~~~~V~Lp~GSLLVMsGesRy~wkH~Ip~---~r~~RISLTFR~v~~  345 (428)
                      .  ......++|.|++||||||.|++|+.|+|+||+   ..+.|||||||+|++
T Consensus       157 ~~~~~~~~~~~i~L~~gsl~vm~g~~~~~~~H~Ip~~~~~~~~RiSlTfR~v~p  210 (210)
T d2iuwa1         157 NGDYTYVERVKIPLDHGTLLIMEGATQADWQHRVPKEYHSREPRVNLTFRTVYP  210 (210)
T ss_dssp             -----CCCEEEEEECTTCEEEEEETHHHHEEEEECCCSSCCCCEEEEEEECCCC
T ss_pred             CCccCCCceEEEEcCCCCEEEeCchhhCceEccCCccCCCCCCeEEEEEEeecC
Confidence            1  123367899999999999999999999999987   468899999999975

PyMOL of d2iuwa1

>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]}	Back information, alignment and structure

>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure