Citrus Sinensis ID: 014282

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------
Protein Sequence
MENLNMALVSSTSPKLVLNYTNFKHPTRGITGPRRSSSLALPFKLSTSRISASVRAGPHQNGQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLSALFSFVASRLKQYAMQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTTPYPAASQPRFTMDIPATKVEAATATDVEGKKEVKGETEVKEEPKKYAFVDVSPEETLQKSSFDNFEDVKETSSSKDAQPPKDSQNGAAFNYNAGSPFGGQSAKKEGRFLTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPGVTGTS
Secondary Structure (PSIPRED)
cccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcHHHHHccccccHHHcccHHHHHHHHccHHHHHHHHHHHHccccccccccHHHHHccccccccHHHHHHHHHccccHHHHHHHHHccHHHHHHcccHHHHHHHHHHHccHHHHHHHHccHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccEEEEccHHHcccccccccHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccHHHHHHHccccccccccHHHHHHHHccHHHHHHHHHHHHHcccccccccHHHHHccccccccHHHHHHHHHHcccHHHHHHHHHccHHHHHHHccHHHHHHHHHHHcccHHHHHHcccHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
menlnmalvsstspklvlnytnfkhptrgitgprrssslalpfklstsrisasvragphqngqvgaggfasltssggqqtssvgvnpnlpmpppssnvgsplfwVGVGVGLSALFSFVASRLKQYAMQQALKGMMNqmntqnkpfgnaafpqgspfpfpnppasgpttpypaasqprftmdipatkveaatatdvegkkevkgetevkeepkkyafvdvspeetlqkssfdnfedvketssskdaqppkdsqngaafnynagspfggqsakkegrfLTVDTLEKLmedpqvqkmvypslpeemrnpasfklMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMmanpeialgfqspRVQAAIMECSqnpmniikyqndKEVMSVITKIAElfpgvtgts
Flexible Loop (DISEMBL)
MENLNMALVSSTSPKLVLNYTNfkhptrgitgprrssslalPFKLSTSRISASVRAGPHQNGQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLSALFSFVASRLKQYAMQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTTPYPAASQPRFTMDIPATKVEaatatdvegkkevkgetevkeepkkyafvdvspeetlqkssfdnFEDVKEtssskdaqppkdsQNGAAFNYNAGspfggqsakkEGRFLTVDTLeklmedpqvQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAelfpgvtgts
Low Complexity Region (SEG)
MENLNMALVSSTSPKLVLNYTNFKHPTRGITGPRRSSSLALPFKLSTSRISASVRAGPHQNGQVGAGGFASLtssggqqtssvgvnpnlpmpppssnVGSPLFWVGVGVGLSALFSFVASRLKQYAMQQALKGMMNQMNTQNKPFGNAAfpqgspfpfpnppasgpttpypaasQPRFTMDIPATKVEAATATDvegkkevkgetevkeepkkYAFVDVSPEETLQKSSFDNFEDVKETSSSKDAQPPKDSQNGAAFNYNAGSPFGGQSAKKEGRFLTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPGVTGTS
Disordered region (IsUnstruct)
***************LVLNYTNF*****************************************************************************PLFWVGVGVGLSALFSFVASRLKQYAMQ*********************************************************************************************************************************************************************************************************C***EFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPG*****
Disordered Region (DISOPRED)
*****************************************************************************************************LFWVGVGVGLSALFSFVASR****************************************************************************************************************************************************************************************************************************************************EVITKMMANPEIALGFQSPRVQAAIMECSQNPM*II*YQNDKEVMSVITKIAE**PG*****
Disordered Region (DISEMBL)
**********STSPKLVLNYTNFKHPTRGITGPRRSSSLALPFKLSTSRISASVRAGPHQNGQVGAGGFASL*********SVGVNPNLPMPPPSSNVGSPLFWVGVGVGLSALFSFVASRLKQYAMQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTTPYPAASQPRFTMDIPATKVEA*******************EEPKKYAFVDVSPEETLQKSSFDN******************SQNGAAFNYNAGSPFGGQSAKKEGRFLTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPGVTGTS
Disordered Region (DISPRO)
****N**LVSSTSPKL**************************************************G*******************PNLPMPPPSSNVGSPLFWVGVGVGLSALFSFVASRLKQYAMQQALKGMMNQM*****PFGNAAFPQGSPFPF*******************************************************Y**V*VSPE*****************************************************FLTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFP******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MENLNMALVSSTSPKLVLNYTNFKHPTRGITGPRRSSSLALPFKLSTSRISASVRAGPHQNGQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLSALFSFVASRLKQYAMQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTTPYPAASQPRFTMDIPATKVEAATATDVEGKKEVKGETEVKEEPKKYAFVDVSPEETLQKSSFDNFEDVKETSSSKDAQPPKDSQNGAAFNYNAGSPFGGQSAKKEGRFLTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPGVTGTS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	427	2.2.26 [Sep-21-2011]
Q8GT66	436	Protein TIC 40, chloropla	N/A	no	0.964	0.944	0.583	1e-128
Q9FMD5	447	Protein TIC 40, chloropla	yes	no	0.992	0.948	0.529	1e-99
Q5ZLF0	361	Hsc70-interacting protein	yes	no	0.124	0.146	0.415	7e-06
P50503	368	Hsc70-interacting protein	yes	no	0.128	0.149	0.363	8e-05
P50502	369	Hsc70-interacting protein	yes	no	0.128	0.149	0.345	0.0003
Q5RF31	369	Hsc70-interacting protein	yes	no	0.128	0.149	0.345	0.0004
Q99L47	371	Hsc70-interacting protein	yes	no	0.128	0.148	0.345	0.0004

>sp|Q8GT66|TIC40_PEA Protein TIC 40, chloroplastic OS=Pisum sativum GN=TIC40 PE=1 SV=1

 Score =  460 bits (1183), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 261/447 (58%), Positives = 326/447 (72%), Gaps = 35/447 (7%)

Query: 1   MENLNMALVSSTSPKLVLNYTNFKHPTRGITGPRRSSSLALPFKLSTSRISASV-RAGP- 58
           MENLN+ALVSS  P L+L +++ K+   G    R+S +    F++S +  S+ V RA   
Sbjct: 1   MENLNLALVSSPKP-LLLGHSSSKNVFSG----RKSFTFGT-FRVSANSSSSHVTRAASK 54

Query: 59  -HQN-----GQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLS 112
            HQN     G+V A  FAS++SS GQ+T+SVGV+P L  PPPS+ VGSPLFW+G+GVG S
Sbjct: 55  SHQNLKSVQGKVNAHDFASISSSNGQETTSVGVSPQLSPPPPST-VGSPLFWIGIGVGFS 113

Query: 113 ALFSFVASRLKQYAMQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTTP--- 169
           ALFS VASR+K+YAMQQA K MM QMNTQN PF + AF  G PFPFP P ASGP TP   
Sbjct: 114 ALFSVVASRVKKYAMQQAFKSMMGQMNTQNNPFDSGAFSSGPPFPFPMPSASGPATPAGF 173

Query: 170 ---------YPAASQPRFTMDIPATKVEAAT-ATDVEGKKEVKGETEVKEEPKKYAFVDV 219
                      +ASQ   T+DIPATKVEAA  A D+     VK E EVK EPKK AFVDV
Sbjct: 174 AGNQSQATSTRSASQSTVTVDIPATKVEAAAPAPDIN----VKEEVEVKNEPKKSAFVDV 229

Query: 220 SPEETLQKSSFDNFEDVKETSSSKDAQPPKD-SQNGAAFNYNAGSPFGGQSAKKEGRFLT 278
           SPEET+QK++F+ F+DV E+SS K+A+ P + SQNG  F    G      S +K    L+
Sbjct: 230 SPEETVQKNAFERFKDVDESSSFKEARAPAEASQNGTPFKQGFGDSPSSPSERKSA--LS 287

Query: 279 VDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGR 338
           VD LEK+MEDP VQ+MVYP LPEEMRNP++FK M+QNPEYR+QL+ ML+ M    E+D R
Sbjct: 288 VDALEKMMEDPTVQQMVYPYLPEEMRNPSTFKWMMQNPEYRQQLEAMLNNMGGGTEWDSR 347

Query: 339 VLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPM 398
           ++D+LKNFDLNS +VKQQF+QIGL+P+EVI+K+MANP++A+ FQ+PRVQAAIM+CSQNPM
Sbjct: 348 MMDTLKNFDLNSPDVKQQFDQIGLSPQEVISKIMANPDVAMAFQNPRVQAAIMDCSQNPM 407

Query: 399 NIIKYQNDKEVMSVITKIAELFPGVTG 425
           +I+KYQNDKEVM V  KI+ELFPGV+G
Sbjct: 408 SIVKYQNDKEVMDVFNKISELFPGVSG 434

Involved in protein precursor import into chloroplasts. Part of the motor complex consisting of a co-chaperone (TIC40) and a chaperone (HSP93) associated with the import channel (TIC110). Causes the release of bound transit peptides from TIC110 and stimulates ATP hydrolysis by HSP93. Involved in reinsertion of proteins from the chloroplast stroma into the inner membrane.
Pisum sativum (taxid: 3888)

>sp|Q9FMD5|TIC40_ARATH Protein TIC 40, chloroplastic OS=Arabidopsis thaliana GN=TIC40 PE=1 SV=1

 Score =  363 bits (933), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 237/448 (52%), Positives = 302/448 (67%), Gaps = 24/448 (5%)

Query: 1   MENLNMALVSSTSPKLVLNYTNFKHPTRGITG-PRRSSSLALPF-KLSTSRISASVRAGP 58
           MENL +   S++SPKL++   NF    +  TG  RR+ ++ L   K+S S  S S  + P
Sbjct: 1   MENLTLVSCSASSPKLLIG-CNFTSSLKNPTGFSRRTPNIVLRCSKISASAQSQSPSSRP 59

Query: 59  HQNGQV-----GAGGFASL-TSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLS 112
              G++      +  FAS+ +SS  QQT+SV        PP SS +GSPLFW+GVGVGLS
Sbjct: 60  ENTGEIVVVKQRSKAFASIFSSSRDQQTTSVASPSVPVPPPSSSTIGSPLFWIGVGVGLS 119

Query: 113 ALFSFVASRLKQYAMQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTTPYPA 172
           ALFS+V S LK+YAMQ A+K MMNQMNTQN  F N+ FP GSPFPFP PP + P +    
Sbjct: 120 ALFSYVTSNLKKYAMQTAMKTMMNQMNTQNSQFNNSGFPSGSPFPFPFPPQTSPASSPFQ 179

Query: 173 ASQPRF--TMDIPATKVEAAT--------ATDVEGKK--EVKGETEVKEEPKKYAFVDVS 220
           +       T+D+ ATKVE           A D+E  K   V   ++ K+E K YAF D+S
Sbjct: 180 SQSQSSGATVDVTATKVETPPSTKPKPTPAKDIEVDKPSVVLEASKEKKEEKNYAFEDIS 239

Query: 221 PEETLQKSSFDNFEDVKETSSSKDAQPPKDS-QNGA--AFNYNAGSPFGGQSAKKEGRFL 277
           PEET ++S F N+ +V ET+S K+ +  +D  QNGA  A    A   F      K G  L
Sbjct: 240 PEETTKESPFSNYAEVSETNSPKETRLFEDVLQNGAGPANGATASEVFQSLGGGKGGPGL 299

Query: 278 TVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDG 337
           +V+ LEK+MEDP VQKMVYP LPEEMRNP +FK ML+NP+YR+QLQ+ML+ M  SGE+D 
Sbjct: 300 SVEALEKMMEDPTVQKMVYPYLPEEMRNPETFKWMLKNPQYRQQLQDMLNNMSGSGEWDK 359

Query: 338 RVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNP 397
           R+ D+LKNFDLNS EVKQQF QIGLTPEEVI+K+M NP++A+ FQ+PRVQAA+MECS+NP
Sbjct: 360 RMTDTLKNFDLNSPEVKQQFNQIGLTPEEVISKIMENPDVAMAFQNPRVQAALMECSENP 419

Query: 398 MNIIKYQNDKEVMSVITKIAELFPGVTG 425
           MNI+KYQNDKEVM V  KI++LFPG+TG
Sbjct: 420 MNIMKYQNDKEVMDVFNKISQLFPGMTG 447

Involved in protein precursor import into chloroplasts. Part of the motor complex consisting of a co-chaperone (TIC40) and a chaperone (HSP93) associated with the import channel (TIC110). Causes the release of bound transit peptides from TIC110 and stimulates ATP hydrolysis by HSP93. Involved in reinsertion of proteins from the chloroplast stroma into the inner membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5ZLF0|F10A1_CHICK Hsc70-interacting protein OS=Gallus gallus GN=ST13 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 37/53 (69%)

Query: 368 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELF 420
           + +++++PE+    Q P V AA  + +QNP N+ KYQN+ +VMS+ITK++  F
Sbjct: 305 LNEILSDPEVLAAMQDPEVMAAFQDVAQNPANMSKYQNNPKVMSLITKLSAKF 357

One HIP oligomer binds the ATPase domains of at least two HSC70 molecules dependent on activation of the HSC70 ATPase by HSP40. Stabilizes the ADP state of HSC70 that has a high affinity for substrate protein. Through its own chaperone activity, it may contribute to the interaction of HSC70 with various target proteins.

Gallus gallus (taxid: 9031)

>sp|P50503|F10A1_RAT Hsc70-interacting protein OS=Rattus norvegicus GN=St13 PE=1 SV=1

 Score = 48.9 bits (115), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 37/55 (67%)

Query: 368 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPG 422
           + +++++PE+    Q P V  A  + +QNP N+ KYQN+ +VM++I+K++  F G
Sbjct: 312 LNEILSDPEVLAAMQDPEVMVAFQDVAQNPSNMSKYQNNPKVMNLISKLSAKFGG 366

One HIP oligomer binds the ATPase domains of at least two HSC70 molecules dependent on activation of the HSC70 ATPase by HSP40. Stabilizes the ADP state of HSC70 that has a high affinity for substrate protein. Through its own chaperone activity, it may contribute to the interaction of HSC70 with various target proteins.

Rattus norvegicus (taxid: 10116)

>sp|P50502|F10A1_HUMAN Hsc70-interacting protein OS=Homo sapiens GN=ST13 PE=1 SV=2

 Score = 46.6 bits (109), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 37/55 (67%)

Query: 368 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPG 422
           + +++++PE+    Q P V  A  + +QNP N+ KYQ++ +VM++I+K++  F G
Sbjct: 313 LNEILSDPEVLAAMQDPEVMVAFQDVAQNPANMSKYQSNPKVMNLISKLSAKFGG 367

One HIP oligomer binds the ATPase domains of at least two HSC70 molecules dependent on activation of the HSC70 ATPase by HSP40. Stabilizes the ADP state of HSC70 that has a high affinity for substrate protein. Through its own chaperone activity, it may contribute to the interaction of HSC70 with various target proteins.

Homo sapiens (taxid: 9606)

>sp|Q5RF31|F10A1_PONAB Hsc70-interacting protein OS=Pongo abelii GN=ST13 PE=2 SV=1

 Score = 46.6 bits (109), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 37/55 (67%)

Query: 368 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPG 422
           + +++++PE+    Q P V  A  + +QNP N+ KYQ++ +VM++I+K++  F G
Sbjct: 313 LNEILSDPEVLAAMQDPEVMVAFQDVAQNPANMSKYQSNPKVMNLISKLSAKFGG 367

One HIP oligomer binds the ATPase domains of at least two HSC70 molecules dependent on activation of the HSC70 ATPase by HSP40. Stabilizes the ADP state of HSC70 that has a high affinity for substrate protein. Through its own chaperone activity, it may contribute to the interaction of HSC70 with various target proteins.

Pongo abelii (taxid: 9601)

>sp|Q99L47|F10A1_MOUSE Hsc70-interacting protein OS=Mus musculus GN=St13 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 37/55 (67%)

Query: 368 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPG 422
           + +++++PE+    Q P V  A  + +QNP N+ KYQ++ +VM++I+K++  F G
Sbjct: 315 LNEILSDPEVLAAMQDPEVMVAFQDVAQNPSNMSKYQSNPKVMNLISKLSAKFGG 369

One HIP oligomer binds the ATPase domains of at least two HSC70 molecules dependent on activation of the HSC70 ATPase by HSP40. Stabilizes the ADP state of HSC70 that has a high affinity for substrate protein. Through its own chaperone activity, it may contribute to the interaction of HSC70 with various target proteins.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	427
5531416	436	translocon Tic40 [Pisum sativum]	0.964	0.944	0.586	1e-127
356539740	429	PREDICTED: uncharacterized protein LOC10	0.955	0.951	0.578	1e-127
75150408	436	RecName: Full=Protein TIC 40, chloroplas	0.964	0.944	0.583	1e-127
356569945	432	PREDICTED: uncharacterized protein LOC10	0.962	0.951	0.573	1e-127
255582251	465	conserved hypothetical protein [Ricinus	0.967	0.888	0.566	1e-125
224079472	429	predicted protein [Populus trichocarpa]	0.974	0.969	0.600	1e-124
94449066	460	plastid Tic40 [Ricinus communis]	0.955	0.886	0.561	1e-122
449462371	419	PREDICTED: protein TIC 40, chloroplastic	0.744	0.758	0.613	1e-107
225460309	436	PREDICTED: protein TIC 40, chloroplastic	0.955	0.935	0.559	1e-106
15237382	447	hydroxyproline-rich glycoprotein family	0.992	0.948	0.529	7e-98

>gi|5531416|emb|CAB50925.1| translocon Tic40 [Pisum sativum]

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 262/447 (58%), Positives = 325/447 (72%), Gaps = 35/447 (7%)

Query: 1   MENLNMALVSSTSPKLVLNYTNFKHPTRGITGPRRSSSLALPFKLSTSRISASV-RAGP- 58
           MENLN+ALVSS  P L+L +++ K+        RR S     F++S +  S+ V RA   
Sbjct: 1   MENLNLALVSSPKP-LLLGHSSSKN-----VFSRRKSFTFGTFRVSANSSSSHVTRAASK 54

Query: 59  -HQN-----GQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLS 112
            HQN     G+V A  FAS++SS GQ+T+SVGV+P L  PPPS+ VGSPLFW+G+GVG S
Sbjct: 55  SHQNLKSVQGKVNAHSFASISSSNGQETTSVGVSPQLSPPPPST-VGSPLFWIGIGVGFS 113

Query: 113 ALFSFVASRLKQYAMQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTTP--- 169
           ALFS VASR+K+YAMQQA K MM QMNTQN PF + AF  G PFPFP P ASGP TP   
Sbjct: 114 ALFSVVASRVKKYAMQQAFKSMMGQMNTQNNPFDSGAFSSGPPFPFPMPSASGPATPAGF 173

Query: 170 ---------YPAASQPRFTMDIPATKVEAAT-ATDVEGKKEVKGETEVKEEPKKYAFVDV 219
                      +ASQ   T+DIPATKVEAA  A D+     VK E EVK EPKK AFVDV
Sbjct: 174 AGNQSQATSTRSASQSTVTVDIPATKVEAAAPAPDIN----VKEEVEVKNEPKKSAFVDV 229

Query: 220 SPEETLQKSSFDNFEDVKETSSSKDAQPPKD-SQNGAAFNYNAGSPFGGQSAKKEGRFLT 278
           SPEET+QK++F+ F+DV E+SS K+A+ P + SQNG  F    G   G  S +K    L+
Sbjct: 230 SPEETVQKNAFERFKDVDESSSFKEARAPAEASQNGTPFKQGFGDSPGSPSERKSA--LS 287

Query: 279 VDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGR 338
           VD LEK+MEDP VQ+MVYP LPEEMRNP++FK M+QNPEYR+QL+ ML+ M    E+D R
Sbjct: 288 VDALEKMMEDPTVQQMVYPYLPEEMRNPSTFKWMMQNPEYRQQLEAMLNNMGGGTEWDSR 347

Query: 339 VLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPM 398
           ++D+LKNFDLNS +VKQQF+QIGL+P+EVI+K+MANP++A+ FQ+PRVQAAIM+CSQNPM
Sbjct: 348 MMDTLKNFDLNSPDVKQQFDQIGLSPQEVISKIMANPDVAMAFQNPRVQAAIMDCSQNPM 407

Query: 399 NIIKYQNDKEVMSVITKIAELFPGVTG 425
           +I+KYQNDKEVM V  KI+ELFPGV+G
Sbjct: 408 SIVKYQNDKEVMDVFNKISELFPGVSG 434

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539740|ref|XP_003538352.1| PREDICTED: uncharacterized protein LOC100781154 [Glycine max]

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 255/441 (57%), Positives = 309/441 (70%), Gaps = 33/441 (7%)

Query: 1   MENLNMALVSSTSPKLVLNYTNFKHPTRGITGPRRSSSLALPFKLSTSRISASVRAGPHQ 60
           ME LN+ALVSS  P L+L +     P R +   +  S   +       R   S  +  H 
Sbjct: 1   MEKLNLALVSSPKP-LMLGHV----PARDVFRRKHFSFGRVLIAPHRCRFRVSALSSSHH 55

Query: 61  N-----GQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLSALF 115
           N      ++    FAS++SS  Q+T+S+GV P L  P PSS +GSPLFW+GVGVGLSALF
Sbjct: 56  NPKSVQEKLIVKHFASISSSNTQETTSIGVKPQLS-PSPSSTIGSPLFWIGVGVGLSALF 114

Query: 116 SFVASRLKQYAMQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTTPYPAAS- 174
           S VASRLK+YAMQQA K MM QMN+QN  FGNAAF  GSPFPFP P A+GPT P  +A+ 
Sbjct: 115 SVVASRLKKYAMQQAFKTMMGQMNSQNNQFGNAAFSPGSPFPFPMPTAAGPTAPASSATT 174

Query: 175 -----------QPRFTMDIPATKVEAATATDVEGKKEVKGETEVKEEPKKYAFVDVSPEE 223
                      Q   T+D+PA KVEAA  T+V      K E E+K EPKK AFVDVSPEE
Sbjct: 175 QSRAPSASSASQSTITVDLPAAKVEAAPTTNV------KDEVELKNEPKKIAFVDVSPEE 228

Query: 224 TLQKSSFDNFEDVKETSSSKDAQPPKD-SQNGAAFNYNAGSPFGGQSAKKEGRFLTVDTL 282
           T+++S F++F+D  E+SS K+A  P + SQNGA  N   G   G QS KK    L+VD L
Sbjct: 229 TVRESPFESFKD-DESSSVKEAWVPDEVSQNGAPSNLGFGDFPGSQSTKKSA--LSVDAL 285

Query: 283 EKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDS 342
           EK+MEDP VQKMVYP LPEEMRNP +FK MLQNP+YR+QL+EML+ M  S E+D R++D+
Sbjct: 286 EKMMEDPTVQKMVYPYLPEEMRNPTTFKWMLQNPQYRQQLEEMLNNMGGSTEWDNRMMDT 345

Query: 343 LKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIK 402
           LKNFDLNS EVKQQF+QIGL+PEEVI+K+MANPE+A+ FQ+PRVQAAIM+CSQNPMNI K
Sbjct: 346 LKNFDLNSPEVKQQFDQIGLSPEEVISKIMANPEVAMAFQNPRVQAAIMDCSQNPMNITK 405

Query: 403 YQNDKEVMSVITKIAELFPGV 423
           YQNDKEVM V  KI+ELFPGV
Sbjct: 406 YQNDKEVMDVFNKISELFPGV 426

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75150408|sp|Q8GT66.1|TIC40_PEA RecName: Full=Protein TIC 40, chloroplastic; AltName: Full=Translocon at the inner envelope membrane of chloroplasts 40; Short=PsTIC40; Flags: Precursor gi|26000725|gb|AAN75219.1| chloroplast protein translocon component Tic40 precursor [Pisum sativum]

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 261/447 (58%), Positives = 326/447 (72%), Gaps = 35/447 (7%)

Query: 1   MENLNMALVSSTSPKLVLNYTNFKHPTRGITGPRRSSSLALPFKLSTSRISASV-RAGP- 58
           MENLN+ALVSS  P L+L +++ K+   G    R+S +    F++S +  S+ V RA   
Sbjct: 1   MENLNLALVSSPKP-LLLGHSSSKNVFSG----RKSFTFGT-FRVSANSSSSHVTRAASK 54

Query: 59  -HQN-----GQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLS 112
            HQN     G+V A  FAS++SS GQ+T+SVGV+P L  PPPS+ VGSPLFW+G+GVG S
Sbjct: 55  SHQNLKSVQGKVNAHDFASISSSNGQETTSVGVSPQLSPPPPST-VGSPLFWIGIGVGFS 113

Query: 113 ALFSFVASRLKQYAMQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTTP--- 169
           ALFS VASR+K+YAMQQA K MM QMNTQN PF + AF  G PFPFP P ASGP TP   
Sbjct: 114 ALFSVVASRVKKYAMQQAFKSMMGQMNTQNNPFDSGAFSSGPPFPFPMPSASGPATPAGF 173

Query: 170 ---------YPAASQPRFTMDIPATKVEAAT-ATDVEGKKEVKGETEVKEEPKKYAFVDV 219
                      +ASQ   T+DIPATKVEAA  A D+     VK E EVK EPKK AFVDV
Sbjct: 174 AGNQSQATSTRSASQSTVTVDIPATKVEAAAPAPDIN----VKEEVEVKNEPKKSAFVDV 229

Query: 220 SPEETLQKSSFDNFEDVKETSSSKDAQPPKD-SQNGAAFNYNAGSPFGGQSAKKEGRFLT 278
           SPEET+QK++F+ F+DV E+SS K+A+ P + SQNG  F    G      S +K    L+
Sbjct: 230 SPEETVQKNAFERFKDVDESSSFKEARAPAEASQNGTPFKQGFGDSPSSPSERKSA--LS 287

Query: 279 VDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGR 338
           VD LEK+MEDP VQ+MVYP LPEEMRNP++FK M+QNPEYR+QL+ ML+ M    E+D R
Sbjct: 288 VDALEKMMEDPTVQQMVYPYLPEEMRNPSTFKWMMQNPEYRQQLEAMLNNMGGGTEWDSR 347

Query: 339 VLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPM 398
           ++D+LKNFDLNS +VKQQF+QIGL+P+EVI+K+MANP++A+ FQ+PRVQAAIM+CSQNPM
Sbjct: 348 MMDTLKNFDLNSPDVKQQFDQIGLSPQEVISKIMANPDVAMAFQNPRVQAAIMDCSQNPM 407

Query: 399 NIIKYQNDKEVMSVITKIAELFPGVTG 425
           +I+KYQNDKEVM V  KI+ELFPGV+G
Sbjct: 408 SIVKYQNDKEVMDVFNKISELFPGVSG 434

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569945|ref|XP_003553154.1| PREDICTED: uncharacterized protein LOC100790904 [Glycine max]

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 253/441 (57%), Positives = 307/441 (69%), Gaps = 30/441 (6%)

Query: 1   MENLNMALVSSTSPKLVLNYTNFKHPTRGITGPRRSSSLALPFKLSTSRISASVRAGPHQ 60
           ME LN+ALVSS  P ++ +       +R +   +  S   +       R   S  +  H+
Sbjct: 1   MEKLNLALVSSPKPLMLGHVPAIDATSRDVFRRKHFSFGRVLIAPHRCRFRVSALSSSHR 60

Query: 61  N-----GQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLSALF 115
           N      ++    FAS++SS  Q+ +S GVNP L    PSS +GSPLFW+GVGVGLSALF
Sbjct: 61  NPKSVQEKLIVKHFASISSSNTQEATSTGVNPQLS---PSSTIGSPLFWIGVGVGLSALF 117

Query: 116 SFVASRLKQYAMQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTTPYPAAS- 174
           S VASRLK+YAMQQA K MM QMN+QN  FGNAAF  GSPFPFP P A+GPT P  +A+ 
Sbjct: 118 SVVASRLKKYAMQQAFKTMMGQMNSQNNQFGNAAFSPGSPFPFPMPTAAGPTAPASSATT 177

Query: 175 -----------QPRFTMDIPATKVEAATATDVEGKKEVKGETEVKEEPKKYAFVDVSPEE 223
                      Q   T+DIPA KVE A  T+V      K E EVK EPKK AFVDVSPEE
Sbjct: 178 QSRAPSASSASQSTITVDIPAAKVEVAPTTNV------KDEVEVKNEPKKIAFVDVSPEE 231

Query: 224 TLQKSSFDNFEDVKETSSSKDAQPPKD-SQNGAAFNYNAGSPFGGQSAKKEGRFLTVDTL 282
           T+Q+S F++F+D  E+SS K+A+ P + SQNGA  N   G   G QS KK    L+VD L
Sbjct: 232 TVQESPFESFKD-DESSSVKEARVPDEVSQNGAPSNQGFGDFPGSQSTKKS--VLSVDAL 288

Query: 283 EKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDS 342
           EK+MEDP VQKMVYP LPEEMRNP +FK MLQNP+YR+QL+EML+ M  S E+D R++D+
Sbjct: 289 EKMMEDPTVQKMVYPYLPEEMRNPTTFKWMLQNPQYRQQLEEMLNNMGGSTEWDSRMMDT 348

Query: 343 LKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIK 402
           LKNFDLNS EVKQQF+QIGL+PEEVI+K+MANPE+A+ FQ+PRVQAAIM+CSQNPMNI K
Sbjct: 349 LKNFDLNSPEVKQQFDQIGLSPEEVISKIMANPEVAMAFQNPRVQAAIMDCSQNPMNITK 408

Query: 403 YQNDKEVMSVITKIAELFPGV 423
           YQNDKEVM V  KI+ELFPGV
Sbjct: 409 YQNDKEVMDVFNKISELFPGV 429

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582251|ref|XP_002531917.1| conserved hypothetical protein [Ricinus communis] gi|223528427|gb|EEF30461.1| conserved hypothetical protein [Ricinus communis]

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 268/473 (56%), Positives = 323/473 (68%), Gaps = 60/473 (12%)

Query: 1   MENLNMALVSS--TSPKLVLN--YTN-FKHPTRGITGPRR-----SSSLALPFKLS---- 46
           MENLNM L+SS   SPKLV+   Y N  K+PT  +T  ++     +S+ ALPF L     
Sbjct: 1   MENLNMGLLSSFYASPKLVMGCCYPNSLKNPT--VTTNKQFSRTSTSTRALPFSLRNYKI 58

Query: 47  ---TSRISASVRAGPHQN------GQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSN 97
              +SR S S  A  H +       ++GA  FAS++S   QQTSSVGVNP    PP SS+
Sbjct: 59  VTRSSRFSISALAHSHSSPRISGSSRLGAEHFASISSR--QQTSSVGVNPQPLPPPSSSS 116

Query: 98  VGSP-LFWVGVGVGLSALFSFVASRLKQYAMQQALKGMMNQMNTQNKPFGNAAFPQGSPF 156
                LFW+GVGVGLSA+FS VA+R+K YAMQQA K MMNQMNTQN  F N AF  GS F
Sbjct: 117 QFGSPLFWIGVGVGLSAIFSLVATRVKNYAMQQAFKSMMNQMNTQNDQFNNPAFSPGSAF 176

Query: 157 PFPNPPASGPTT--PYPAAS-----------------------QPRFTMDIPATKVEAAT 191
           PFP PPAS P +  P+P +S                       QP  T+D+ ATKVEAA+
Sbjct: 177 PFPTPPASVPASSPPFPTSSTSRPATSPSYPTSSASTSPSVASQPAVTVDVSATKVEAAS 236

Query: 192 ATDVEGKKEVKGETEVKEEPKKYAFVDVSPEETLQKSSFDNFEDVKETSSSKDAQ-PPKD 250
            TD       K E E+ +EPKKYAFVDVSPEET  KS F + ED+ ETS+SKD Q  P+ 
Sbjct: 237 VTDA------KDEAEITKEPKKYAFVDVSPEETFPKSPFKSNEDILETSTSKDTQFNPEV 290

Query: 251 SQNGAAFNYNAGSPFGGQSAKKEGRFLTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFK 310
            QNGAA N  A    G QS +K G  L+V+ LEK+MEDP VQKMVYP LPEEMRNP++FK
Sbjct: 291 LQNGAASNQGAADFTGSQSTRKAGSGLSVEALEKMMEDPTVQKMVYPYLPEEMRNPSTFK 350

Query: 311 LMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITK 370
            MLQNP+YR+QL+EML+ M  +GE+D R++DSLKNFDL+S EVKQQF+QIGLTPEEVI+K
Sbjct: 351 WMLQNPQYRQQLEEMLNNMSGTGEWDNRMMDSLKNFDLSSPEVKQQFDQIGLTPEEVISK 410

Query: 371 MMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPGV 423
           +MANPEIA+ FQ+PRVQ AIM+CSQNP++I KYQNDKEVM V  KI+ELFPGV
Sbjct: 411 IMANPEIAMAFQNPRVQQAIMDCSQNPLSIAKYQNDKEVMDVFNKISELFPGV 463

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079472|ref|XP_002305876.1| predicted protein [Populus trichocarpa] gi|222848840|gb|EEE86387.1| predicted protein [Populus trichocarpa]

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 263/438 (60%), Positives = 326/438 (74%), Gaps = 22/438 (5%)

Query: 1   MENLNMALVSSTSPKLVLNY-TNFKHPTRGITGPRRSSSL---ALPFKLSTSRISA---- 52
           MEN  +AL+SS+SPKLV+ Y T+ K+PT     P+ S S    +LPF L  S+ +     
Sbjct: 1   MENPRLALLSSSSPKLVMGYPTSLKNPTT----PKFSISTTRPSLPFSLRISKTAPHASI 56

Query: 53  -SVRAGPHQNGQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGL 111
            S+ A  + +G++G+  FAS++SS G+QT+SVGVNP    PP  S +GSPLFWVGVGVGL
Sbjct: 57  FSISALANSHGKLGSEYFASISSSSGKQTASVGVNPQPVSPP-PSQIGSPLFWVGVGVGL 115

Query: 112 SALFSFVASRLKQYAMQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTT-PY 170
           SA+FS+VA+R+K YAMQQA K +  QMNTQN  F N AF    PFPF  PPAS P+T P 
Sbjct: 116 SAIFSWVATRVKNYAMQQAFKSLTEQMNTQNNQF-NPAFSARPPFPFSPPPASHPSTSPS 174

Query: 171 PAASQPRFTMDIPATKVEAATATDVEGKKEVK--GETEVKEEPKKYAFVDVSPEETLQKS 228
           PAASQP  T+DIPATKVEAA  TDV  +KE     E ++KEE KKYAFVD+SPEET   +
Sbjct: 175 PAASQPAITVDIPATKVEAAPTTDVGKEKETDFLEERKIKEETKKYAFVDISPEETSLNT 234

Query: 229 SFDNFEDVKETSSSKDAQPPKDS-QNGAAFNYNAGSPFGGQSAKKEGRFLTVDTLEKLME 287
            F + ED  ETSSSKD +  K   QNGAAF    G+  G QS +    FL+V+ LEK+ME
Sbjct: 235 PFSSVEDDNETSSSKDVEFAKKVFQNGAAFKQGPGAAEGSQSTRP---FLSVEALEKMME 291

Query: 288 DPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFD 347
           DP +QKMVYP LPEEMRNP +FK MLQNP+YR+QL++ML+ M  SG++D +++DSLK+FD
Sbjct: 292 DPTMQKMVYPYLPEEMRNPTTFKWMLQNPQYRQQLEDMLNNMGGSGKWDSQMMDSLKDFD 351

Query: 348 LNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDK 407
           LNSAEVKQQF+QIGLTPEEVI+K+MANP++A+ FQ+PRVQ AIMECSQNP+NI KYQNDK
Sbjct: 352 LNSAEVKQQFDQIGLTPEEVISKIMANPDVAMAFQNPRVQQAIMECSQNPINITKYQNDK 411

Query: 408 EVMSVITKIAELFPGVTG 425
           EVM V  KI+ELFPG+TG
Sbjct: 412 EVMDVFNKISELFPGMTG 429

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|94449066|gb|ABF19057.1| plastid Tic40 [Ricinus communis]

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 263/468 (56%), Positives = 318/468 (67%), Gaps = 60/468 (12%)

Query: 6   MALVSS--TSPKLVLN--YTN-FKHPTRGITGPRR-----SSSLALPFKLS-------TS 48
           M L+SS   SPKLV+   Y N  K+PT  +T  ++     +S+ ALPF L        +S
Sbjct: 1   MGLLSSFYASPKLVMGCCYPNSLKNPT--VTTNKQFSRTSTSTRALPFSLRNYKIVTRSS 58

Query: 49  RISASVRAGPHQN------GQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSP- 101
           R S S  A  H +       ++GA  FAS++S   QQTSSVGVNP    PP SS+     
Sbjct: 59  RFSISALAHSHSSPRISGSSRLGAEHFASISSR--QQTSSVGVNPQPLPPPSSSSQFGSP 116

Query: 102 LFWVGVGVGLSALFSFVASRLKQYAMQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNP 161
           LFW+GVGVGLSA+FS VA+R+K YAMQQA K MMNQMNTQN  F N AF  GS FPFP P
Sbjct: 117 LFWIGVGVGLSAIFSLVATRVKNYAMQQAFKSMMNQMNTQNDQFNNPAFSPGSAFPFPTP 176

Query: 162 PASGPTT--PYPAAS-----------------------QPRFTMDIPATKVEAATATDVE 196
           PAS P +  P+P +S                       QP  T+D+ ATKVEAA+ TD  
Sbjct: 177 PASVPASSPPFPTSSTSRPATSPSYPTSSASTSPSVASQPAVTVDVSATKVEAASVTDA- 235

Query: 197 GKKEVKGETEVKEEPKKYAFVDVSPEETLQKSSFDNFEDVKETSSSKDAQ-PPKDSQNGA 255
                K E E+ +EPKKYAFVDVSPEET  KS F + ED+ ETS+SKD Q  P+  QNGA
Sbjct: 236 -----KDEAEITKEPKKYAFVDVSPEETFPKSPFKSNEDILETSTSKDTQFNPEVLQNGA 290

Query: 256 AFNYNAGSPFGGQSAKKEGRFLTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQN 315
           A N  A    G QS +K G  L+V+ LEK+MEDP VQKMVYP LPEEMRNP++FK MLQN
Sbjct: 291 ASNQGAADFTGSQSTRKAGSGLSVEALEKMMEDPTVQKMVYPYLPEEMRNPSTFKWMLQN 350

Query: 316 PEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANP 375
           P+YR+QL+EML+ M  +GE+D R++DSLKNFDL+S EVKQQF+QIGLTPEEVI+K+MANP
Sbjct: 351 PQYRQQLEEMLNNMSGTGEWDNRMMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANP 410

Query: 376 EIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPGV 423
           EIA+ FQ+PRVQ AIM+CSQNP++I KYQNDKEVM V  KI+ELFPGV
Sbjct: 411 EIAMAFQNPRVQQAIMDCSQNPLSIAKYQNDKEVMDVFNKISELFPGV 458

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462371|ref|XP_004148914.1| PREDICTED: protein TIC 40, chloroplastic-like [Cucumis sativus]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/329 (61%), Positives = 247/329 (75%), Gaps = 11/329 (3%)

Query: 98  VGSPLFWVGVGVGLSALFSFVASRLKQYAMQQALKGMMNQMNTQNKPFGNAAFPQGSPFP 157
           VGSPLFWVGVGVGLSALF++VAS LK+YAMQQA K MM+QMN+QN P  N     GSPFP
Sbjct: 99  VGSPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNSQNSPMSNPTLSSGSPFP 158

Query: 158 FPNPPASGPTTPYPAASQPRFTMDIPATKVEAATATDVEGKKEVKGETEVKEEPKKYAFV 217
            P   A+G TT  P+ S+P  ++D+ ATKVE    T+V+ + E         E KK+AFV
Sbjct: 159 IPPTFATG-TTISPSVSEPAVSIDVTATKVEEEPVTNVKSRTE-------NMEAKKFAFV 210

Query: 218 DVSPEETLQKSSFDNFEDVKETSSSKDAQPPKD-SQNGAAFNYNAGSPFGGQSAKKEGRF 276
           DVSPEET QKS F   ED  +   SK AQP ++  QNGAA         G Q ++K G  
Sbjct: 211 DVSPEETDQKSPFK--EDATDADVSKSAQPTQELPQNGAASKQAYNGSDGSQFSRKPGSV 268

Query: 277 LTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFD 336
           L+V+ +EK+MEDP VQKM+YP LPEEMRNP +FK M+QNP YR+QL+EML+ M  S ++D
Sbjct: 269 LSVEAVEKMMEDPTVQKMIYPHLPEEMRNPETFKWMMQNPLYRQQLEEMLNNMSGSPQWD 328

Query: 337 GRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQN 396
           GR++DSLKNFDL+S EVKQQF+QIGLTPEEVI+K+MANPEIA+ FQ+PRVQAAIM+CSQN
Sbjct: 329 GRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQN 388

Query: 397 PMNIIKYQNDKEVMSVITKIAELFPGVTG 425
           P++I KYQNDKEVM V  KI+ELFPGV+G
Sbjct: 389 PLSITKYQNDKEVMDVFNKISELFPGVSG 417

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460309|ref|XP_002282574.1| PREDICTED: protein TIC 40, chloroplastic [Vitis vinifera] gi|296089465|emb|CBI39284.3| unnamed protein product [Vitis vinifera]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 249/445 (55%), Positives = 301/445 (67%), Gaps = 37/445 (8%)

Query: 5   NMALVSSTSPKLVLNYTNFKHPT--RGITGPRRSSSLALPFK-----LSTSRISASVRAG 57
           ++ LVSS  PKLVL ++    P+  R I+    S SL L F+     ++ S+  AS R  
Sbjct: 3   SLTLVSS--PKLVLGHS----PSNPRHISCAHSSFSLPLLFRKPRKFIAASQSGASPRTP 56

Query: 58  PHQ-NGQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLSALFS 116
            H    ++G   FAS  SS  Q TSSVGVNP    PPPSSN+GSPLFW+GVGVGLSALFS
Sbjct: 57  RHVVETKLGTECFAS-ISSSSQGTSSVGVNPQFSPPPPSSNIGSPLFWIGVGVGLSALFS 115

Query: 117 FVASRLKQYAMQQALKGMMNQMNTQNKPFGNAAFPQG--------------SPFPFPNPP 162
           +VAS LK+YAMQQA K +M QM++QN  F    F  G              +    P   
Sbjct: 116 WVASNLKKYAMQQAFKTLMGQMDSQNNQFNTTTFSPGSPFPFPMPPPSGPSTSHSGPTTS 175

Query: 163 ASGPTT-PYPAASQPRFTMDIPATKVEAATATDVEGKKEVKGETEVKEEPKKYAFVDVSP 221
            SGPTT P   A+Q   T+D+PATKVE   ATDV      K + E K E  KYAFVDVSP
Sbjct: 176 PSGPTTSPSTVAAQSMVTVDVPATKVETPPATDV------KDDIEKKNEQNKYAFVDVSP 229

Query: 222 EETLQKSSFDNFEDVKETSSSKDAQ-PPKDSQNGAAFNYNAGSPFGGQSAKKEGRFLTVD 280
           EETLQ+S F+NFE+  ETSSSKDAQ     SQNG       G     QS +    FL+VD
Sbjct: 230 EETLQESPFENFEESTETSSSKDAQFSAGVSQNGTPPRPGMGVSEDSQSTRNANPFLSVD 289

Query: 281 TLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVL 340
            LEK+MEDP VQKMVYP LPEEMRNP +FK MLQNP+YR+QLQ+ML+ M    E+D R++
Sbjct: 290 ALEKMMEDPTVQKMVYPYLPEEMRNPTTFKWMLQNPQYRQQLQDMLNNMGGGAEWDNRMM 349

Query: 341 DSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNI 400
           D+LKNFDL+S EVKQQF+QIGLTPEEVI+K+MANP++AL FQ+PR+QAAIM+CSQNP++I
Sbjct: 350 DNLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPDVALAFQNPRIQAAIMDCSQNPLSI 409

Query: 401 IKYQNDKEVMSVITKIAELFPGVTG 425
            KYQNDKEVM V  KI+ELFPGV+G
Sbjct: 410 AKYQNDKEVMDVFNKISELFPGVSG 434

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237382|ref|NP_197165.1| hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] gi|75309208|sp|Q9FMD5.1|TIC40_ARATH RecName: Full=Protein TIC 40, chloroplastic; AltName: Full=Protein PIGMENT DEFECTIVE EMBRYO 120; AltName: Full=Translocon at the inner envelope membrane of chloroplasts 40; Short=AtTIC40; Flags: Precursor gi|16226313|gb|AAL16131.1|AF428299_1 AT5g16620/MTG13_6 [Arabidopsis thaliana] gi|10176971|dbj|BAB10189.1| translocon Tic40-like protein [Arabidopsis thaliana] gi|20260222|gb|AAM13009.1| translocon Tic40-like protein [Arabidopsis thaliana] gi|30387547|gb|AAP31939.1| At5g16620 [Arabidopsis thaliana] gi|332004935|gb|AED92318.1| hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

 Score =  363 bits (933), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 237/448 (52%), Positives = 302/448 (67%), Gaps = 24/448 (5%)

Query: 1   MENLNMALVSSTSPKLVLNYTNFKHPTRGITG-PRRSSSLALPF-KLSTSRISASVRAGP 58
           MENL +   S++SPKL++   NF    +  TG  RR+ ++ L   K+S S  S S  + P
Sbjct: 1   MENLTLVSCSASSPKLLIG-CNFTSSLKNPTGFSRRTPNIVLRCSKISASAQSQSPSSRP 59

Query: 59  HQNGQV-----GAGGFASL-TSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLS 112
              G++      +  FAS+ +SS  QQT+SV        PP SS +GSPLFW+GVGVGLS
Sbjct: 60  ENTGEIVVVKQRSKAFASIFSSSRDQQTTSVASPSVPVPPPSSSTIGSPLFWIGVGVGLS 119

Query: 113 ALFSFVASRLKQYAMQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTTPYPA 172
           ALFS+V S LK+YAMQ A+K MMNQMNTQN  F N+ FP GSPFPFP PP + P +    
Sbjct: 120 ALFSYVTSNLKKYAMQTAMKTMMNQMNTQNSQFNNSGFPSGSPFPFPFPPQTSPASSPFQ 179

Query: 173 ASQPRF--TMDIPATKVEAAT--------ATDVEGKK--EVKGETEVKEEPKKYAFVDVS 220
           +       T+D+ ATKVE           A D+E  K   V   ++ K+E K YAF D+S
Sbjct: 180 SQSQSSGATVDVTATKVETPPSTKPKPTPAKDIEVDKPSVVLEASKEKKEEKNYAFEDIS 239

Query: 221 PEETLQKSSFDNFEDVKETSSSKDAQPPKDS-QNGA--AFNYNAGSPFGGQSAKKEGRFL 277
           PEET ++S F N+ +V ET+S K+ +  +D  QNGA  A    A   F      K G  L
Sbjct: 240 PEETTKESPFSNYAEVSETNSPKETRLFEDVLQNGAGPANGATASEVFQSLGGGKGGPGL 299

Query: 278 TVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDG 337
           +V+ LEK+MEDP VQKMVYP LPEEMRNP +FK ML+NP+YR+QLQ+ML+ M  SGE+D 
Sbjct: 300 SVEALEKMMEDPTVQKMVYPYLPEEMRNPETFKWMLKNPQYRQQLQDMLNNMSGSGEWDK 359

Query: 338 RVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNP 397
           R+ D+LKNFDLNS EVKQQF QIGLTPEEVI+K+M NP++A+ FQ+PRVQAA+MECS+NP
Sbjct: 360 RMTDTLKNFDLNSPEVKQQFNQIGLTPEEVISKIMENPDVAMAFQNPRVQAALMECSENP 419

Query: 398 MNIIKYQNDKEVMSVITKIAELFPGVTG 425
           MNI+KYQNDKEVM V  KI++LFPG+TG
Sbjct: 420 MNIMKYQNDKEVMDVFNKISQLFPGMTG 447

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	427
TAIR|locus:2174155	447	TIC40 "translocon at the inner	0.768	0.733	0.527	3.8e-85
UNIPROTKB|Q5ZLF0	361	ST13 "Hsc70-interacting protei	0.124	0.146	0.415	2.7e-05
RGD|621312	368	St13 "suppression of tumorigen	0.128	0.149	0.363	0.00017
UNIPROTKB|A7E3S8	369	ST13 "Uncharacterized protein"	0.128	0.149	0.345	0.00062
UNIPROTKB|P50502	369	ST13 "Hsc70-interacting protei	0.128	0.149	0.345	0.00062
MGI|MGI:1917606	371	St13 "suppression of tumorigen	0.128	0.148	0.345	0.00063

TAIR|locus:2174155 TIC40 "translocon at the inner envelope membrane of chloroplasts 40" [Arabidopsis thaliana (taxid:3702)]

 Score = 852 (305.0 bits), Expect = 3.8e-85, P = 3.8e-85
 Identities = 181/343 (52%), Positives = 224/343 (65%)

Query:    98 VGSPLFWVGVGVGLSALFSFVASRLKQYAMQQALKGMMNQMNTQNKPFGNAAXXXXXXXX 157
             +GSPLFW+GVGVGLSALFS+V S LK+YAMQ A+K MMNQMNTQN  F N+         
Sbjct:   105 IGSPLFWIGVGVGLSALFSYVTSNLKKYAMQTAMKTMMNQMNTQNSQFNNSGFPSGSPFP 164

Query:   158 XXX--XXXXXXXXXXXXXXQPRFTMDIPATKVEAATAT----------DXXXXXXXXXXX 205
                                    T+D+ ATKVE   +T          +           
Sbjct:   165 FPFPPQTSPASSPFQSQSQSSGATVDVTATKVETPPSTKPKPTPAKDIEVDKPSVVLEAS 224

Query:   206 XXXXXXXXYAFVDVSPEETLQKSSFDNFEDVKETSSSKDAQPPKDS-QNGA--AFNYNAG 262
                     YAF D+SPEET ++S F N+ +V ET+S K+ +  +D  QNGA  A    A 
Sbjct:   225 KEKKEEKNYAFEDISPEETTKESPFSNYAEVSETNSPKETRLFEDVLQNGAGPANGATAS 284

Query:   263 SPFGGQSAKKEGRFLTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQL 322
               F      K G  L+V+ LEK+MEDP VQKMVYP LPEEMRNP +FK ML+NP+YR+QL
Sbjct:   285 EVFQSLGGGKGGPGLSVEALEKMMEDPTVQKMVYPYLPEEMRNPETFKWMLKNPQYRQQL 344

Query:   323 QEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQ 382
             Q+ML+ M  SGE+D R+ D+LKNFDLNS EVKQQF QIGLTPEEVI+K+M NP++A+ FQ
Sbjct:   345 QDMLNNMSGSGEWDKRMTDTLKNFDLNSPEVKQQFNQIGLTPEEVISKIMENPDVAMAFQ 404

Query:   383 SPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPGVTG 425
             +PRVQAA+MECS+NPMNI+KYQNDKEVM V  KI++LFPG+TG
Sbjct:   405 NPRVQAALMECSENPMNIMKYQNDKEVMDVFNKISQLFPGMTG 447

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009658 "chloroplast organization" evidence=RCA;IMP

GO:0031897 "Tic complex" evidence=TAS

GO:0045037 "protein import into chloroplast stroma" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

UNIPROTKB|Q5ZLF0 ST13 "Hsc70-interacting protein" [Gallus gallus (taxid:9031)]

 Score = 127 (49.8 bits), Expect = 2.7e-05, P = 2.7e-05
 Identities = 22/53 (41%), Positives = 37/53 (69%)

Query:   368 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELF 420
             + +++++PE+    Q P V AA  + +QNP N+ KYQN+ +VMS+ITK++  F
Sbjct:   305 LNEILSDPEVLAAMQDPEVMAAFQDVAQNPANMSKYQNNPKVMSLITKLSAKF 357

GO:0005737 "cytoplasm" evidence=IEA

RGD|621312 St13 "suppression of tumorigenicity 13" [Rattus norvegicus (taxid:10116)]

 Score = 120 (47.3 bits), Expect = 0.00017, P = 0.00017
 Identities = 20/55 (36%), Positives = 37/55 (67%)

Query:   368 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPG 422
             + +++++PE+    Q P V  A  + +QNP N+ KYQN+ +VM++I+K++  F G
Sbjct:   312 LNEILSDPEVLAAMQDPEVMVAFQDVAQNPSNMSKYQNNPKVMNLISKLSAKFGG 366

GO:0005829 "cytosol" evidence=IDA

GO:0006457 "protein folding" evidence=IDA

GO:0019904 "protein domain specific binding" evidence=IDA;IPI

GO:0030544 "Hsp70 protein binding" evidence=IDA;IPI

GO:0032403 "protein complex binding" evidence=IDA

GO:0032564 "dATP binding" evidence=IDA

GO:0042802 "identical protein binding" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0051082 "unfolded protein binding" evidence=IDA

GO:0051087 "chaperone binding" evidence=IPI

GO:0051260 "protein homooligomerization" evidence=IDA

GO:0061084 "negative regulation of protein refolding" evidence=IDA

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=IDA

UNIPROTKB|A7E3S8 ST13 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 115 (45.5 bits), Expect = 0.00062, P = 0.00062
 Identities = 19/55 (34%), Positives = 37/55 (67%)

Query:   368 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPG 422
             + +++++PE+    Q P V  A  + +QNP N+ KYQ++ +VM++I+K++  F G
Sbjct:   313 LNEILSDPEVLAAMQDPEVMVAFQDVAQNPANMSKYQSNPKVMNLISKLSAKFGG 367

GO:0006950 "response to stress" evidence=IEA

UNIPROTKB|P50502 ST13 "Hsc70-interacting protein" [Homo sapiens (taxid:9606)]

 Score = 115 (45.5 bits), Expect = 0.00062, P = 0.00062
 Identities = 19/55 (34%), Positives = 37/55 (67%)

Query:   368 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPG 422
             + +++++PE+    Q P V  A  + +QNP N+ KYQ++ +VM++I+K++  F G
Sbjct:   313 LNEILSDPEVLAAMQDPEVMVAFQDVAQNPANMSKYQSNPKVMNLISKLSAKFGG 367

GO:0005829 "cytosol" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0030544 "Hsp70 protein binding" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0032564 "dATP binding" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0061084 "negative regulation of protein refolding" evidence=IEA

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=IEA

GO:0006457 "protein folding" evidence=TAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0030674 "protein binding, bridging" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1917606 St13 "suppression of tumorigenicity 13" [Mus musculus (taxid:10090)]

 Score = 115 (45.5 bits), Expect = 0.00063, P = 0.00063
 Identities = 19/55 (34%), Positives = 37/55 (67%)

Query:   368 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPG 422
             + +++++PE+    Q P V  A  + +QNP N+ KYQ++ +VM++I+K++  F G
Sbjct:   315 LNEILSDPEVLAAMQDPEVMVAFQDVAQNPSNMSKYQSNPKVMNLISKLSAKFGG 369


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.129   0.361    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      427       358   0.00081  117 3  11 23  0.44    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  591 (63 KB)
  Total size of DFA:  198 KB (2112 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  31.17u 0.10s 31.27t   Elapsed:  00:00:04
  Total cpu time:  31.18u 0.10s 31.28t   Elapsed:  00:00:04
  Start:  Tue May 21 07:31:22 2013   End:  Tue May 21 07:31:26 2013

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0006457 "protein folding" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0030544 "Hsp70 protein binding" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0032564 "dATP binding" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0051082 "unfolded protein binding" evidence=ISO

GO:0051087 "chaperone binding" evidence=ISO

GO:0051260 "protein homooligomerization" evidence=ISO

GO:0061084 "negative regulation of protein refolding" evidence=ISO

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FMD5	TIC40_ARATH	No assigned EC number	0.5290	0.9929	0.9485	yes	no
Q8GT66	TIC40_PEA	No assigned EC number	0.5838	0.9648	0.9449	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_IV0696 hypothetical protein (430 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	427
pfam13658	96	pfam13658, UCH37_bd, Ubiquitin C-terminal hydrolas	3e-11

>gnl|CDD|222294 pfam13658, UCH37_bd, Ubiquitin C-terminal hydrolase 37 receptor binding site

 Score = 59.2 bits (144), Expect = 3e-11
 Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 11/98 (11%)

Query: 277 LTVDTLEKLMED-PQVQKMVYPSLPEE--MRNPASFKLMLQNPEYRKQLQEMLDGMCESG 333
           LT + LE L+E  PQVQ+ + P LPE   MRNP   + ML++P++++ L  +   +  SG
Sbjct: 7   LTPENLEPLLESPPQVQERLLPHLPEGDLMRNPEDLREMLRSPQFKQALASLSQAL-RSG 65

Query: 334 EFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKM 371
                    L    LN  EV   F   G   E  +  +
Sbjct: 66  GLP----SLLSQLGLNPEEV---FAANGGDVEAFLEAL 96

This domain appears frequently at the C-terminus of Proteasom_Rpn13, pfam04683. It is a proteasome subunit that binds the de-ubiquitinating enzyme, UCH37. Length = 96

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	427
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	100.0
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.79
smart00727	41	STI1 Heat shock chaperonin-binding motif.	98.52
smart00727	41	STI1 Heat shock chaperonin-binding motif.	97.01
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	94.12
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	93.35
KOG3037	330	consensus Cell membrane glycoprotein [General func	92.9
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	91.3
PRK00523	72	hypothetical protein; Provisional	89.77
PRK01844	72	hypothetical protein; Provisional	89.68
PF03672	64	UPF0154: Uncharacterised protein family (UPF0154);	80.45

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-37  Score=306.89  Aligned_cols=322  Identities=27%  Similarity=0.293  Sum_probs=231.2

Q ss_pred             CCCcccccceeeecCCCccccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 014282           61 NGQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLSALFSFVASRLKQYAMQQALKGMMNQMNT  140 (427)
Q Consensus        61 ~~~~~~~~fas~~s~~~~~~~s~~~~~~~~~pp~~s~iGsPl~wiGvGVgLsalfs~va~~vK~yaMqqa~KsMm~qm~~  140 (427)
                      ..+-+++.|++|+++..-   ++-..-+++++|-.+.++.++||++++|++..+++.|-...++|.+++=+|.=--++. 
T Consensus        50 ~~~e~~k~e~~~~~~~ee---~~~~~e~s~~~~~~~~d~egviepd~d~pq~MGds~~e~Tee~~eqa~e~k~~A~eAl-  125 (377)
T KOG1308|consen   50 KSEENTKAEASISKSVEE---SLKAPEVSSPESDLEIDGEGVIEPDTDAPQEMGDSNAEITEEMMDQANDKKVQASEAL-  125 (377)
T ss_pred             cccccccccCCccccccc---ccccCCCCCCCcchhccCCCccccCCCcchhhchhhhhhhHHHHHHHHHHHHHHHHHh-
Confidence            366789999999887443   7777777775555568999999999999999999999999999999984444333333 


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCccccccccccccccccccCcccccc---CCcccccc
Q 014282          141 QNKPFGNAAFPQGSPFPFPNPPASGPTTPYPAASQPRFTMDIPATKVEAATATDVEGKKEVKGETEVKE---EPKKYAFV  217 (427)
Q Consensus       141 ~~~~fg~~~f~~gspFpfp~pp~~~p~~~~~~~s~~~~tvd~~at~v~a~~~~~~~~~~e~~~~~e~~~---~~kk~afv  217 (427)
                            +..|       |     ...-..+    +.+++...++.--.+--.+.         -.+.++   +-+.++|-
T Consensus       126 ------n~G~-------~-----~~ai~~~----t~ai~lnp~~a~l~~kr~sv---------~lkl~kp~~airD~d~A  174 (377)
T KOG1308|consen  126 ------NDGE-------F-----DTAIELF----TSAIELNPPLAILYAKRASV---------FLKLKKPNAAIRDCDFA  174 (377)
T ss_pred             ------cCcc-------h-----hhhhccc----ccccccCCchhhhcccccce---------eeeccCCchhhhhhhhh
Confidence                  3322       0     0000000    01111111111111100110         112333   34678888


Q ss_pred             cCCchhhhhcccccccccccccCCCCCCCCC-CCCCCCCCCCCCCCCCC--CCCCccccCccccHHHHHHhhcCHHHHHh
Q 014282          218 DVSPEETLQKSSFDNFEDVKETSSSKDAQPP-KDSQNGAAFNYNAGSPF--GGQSAKKEGRFLTVDTLEKLMEDPQVQKM  294 (427)
Q Consensus       218 DV~~~e~~~~~~~~~~~~~~~~ss~k~~~~~-~~~~~g~~~~~g~g~~~--~~~~~~~~~~~~~~~~l~~Mm~nPq~QqM  294 (427)
                      +....++-+..+|......-.+...+.+.-- .+.+++..-..++-...  -..-....++.......++++.++.++++
T Consensus       175 ~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~~e~~~~~r~er~  254 (377)
T KOG1308|consen  175 IEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERAREEREIKERVERV  254 (377)
T ss_pred             hccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHHHHHhccccccccc
Confidence            8888888887787766655555544322211 12211111100000000  00112334556779999999999999999


Q ss_pred             hcCCCccccCCHHHHHHHhhChHHHHHHHHHHHhccCCCCCchhHhhhhhcCCCChHHHHHHHHhcCCChHHHHHHhcCC
Q 014282          295 VYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMAN  374 (427)
Q Consensus       295 ~ypyLPe~MRNp~tfk~MlqNPq~rqqL~~Ml~~mgg~g~~~~~m~d~l~e~D~Nn~Ev~q~f~~~G~tpEE~~skaM~D  374 (427)
                      +|+|+|++|+|+++++|+++|++||+++.+|.+.|+|+..|+-+|.+.|++.+.|.. +.+++.+.|      +.+||.|
T Consensus       255 r~~r~~~e~~~~e~~k~~~~~~~~~~~~g~~p~~M~g~~~~~~~m~~~m~~~~~n~~-~~~~p~~~g------i~ki~~d  327 (377)
T KOG1308|consen  255 RYAREPEEMANPEEFKRMLKNPQYRQFLGGFPGGMPGSFPGDKRMTDGMKGFDGNSP-VKQQPNQIG------ISKILSD  327 (377)
T ss_pred             ccccchhhhcChhhhhhhhccCCCCcccCCCcccCCCCCCCccccccccccCCCCCc-cccCCCccc------HhhhcCc
Confidence            999999999999999999999999999999999999999899999999999999999 777777777      8999999


Q ss_pred             HHHHhhcCCHHHHHHHHHHhhChHHHHHhhcCHHHHHHHHHHHHHCCCCC
Q 014282          375 PEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPGVT  424 (427)
Q Consensus       375 PEI~aamQDPeV~aALqDI~sNPaai~KYmsNPkVm~~IqKL~a~FgG~~  424 (427)
                      |||+++||||+|+++|+||++||+|++||++|||||++|.||+.+|+|+.
T Consensus       328 pev~aAfqdp~v~aal~d~~~np~n~~kyq~n~kv~~~i~kl~~kf~g~~  377 (377)
T KOG1308|consen  328 PEVAAAFQDPEVQAALMDVSQNPANMMKYQNNPKVMDVISKLSQKFPGMT  377 (377)
T ss_pred             hHHHHhhcChHHHhhhhhcccChHHHHHhccChHHHHHHHHHHhhcCCCC
Confidence            99999999999999999999999999999999999999999999999974

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=1.3e-08  Score=106.80  Aligned_cols=75  Identities=25%  Similarity=0.377  Sum_probs=68.7

Q ss_pred             hcCCCChHHHHHHH-----H-hcCCChHHHHHHhcCCHHHHhhcCCHHHHHHHHHHhhChHHHHHhhcCHHHHHHHHHHH
Q 014282          344 KNFDLNSAEVKQQF-----E-QIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIA  417 (427)
Q Consensus       344 ~e~D~Nn~Ev~q~f-----~-~~G~tpEE~~skaM~DPEI~aamQDPeV~aALqDI~sNPaai~KYmsNPkVm~~IqKL~  417 (427)
                      .++|+++.|+.+++     . +...+++++.+++|.||||++||+||.++.+|.++++|| +.++|+.||.|+++|+||+
T Consensus       453 le~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r~~~dpev~~il~d~~m~~~l~q~q~~p-a~~~~~~n~~v~~ki~~l~  531 (539)
T KOG0548|consen  453 LELDPSNAEAIDGYRRCVEAQRGDETPEETKRRAMADPEVQAILQDPAMRQILEQMQENP-ALQEHLKNPMVMQKIEKLI  531 (539)
T ss_pred             HhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHhhccCHHHHHHHcCHHHHHHHHHHHhCH-HHHHHHhccHHHHHHHHHH
Confidence            45779999999888     2 457999999999999999999999999999999999999 8899999999999999998


Q ss_pred             HH
Q 014282          418 EL  419 (427)
Q Consensus       418 a~  419 (427)
                      +.
T Consensus       532 ~~  533 (539)
T KOG0548|consen  532 SA  533 (539)
T ss_pred             Hh
Confidence            73

>smart00727 STI1 Heat shock chaperonin-binding motif

Probab=98.52  E-value=1.1e-07  Score=67.55  Aligned_cols=40  Identities=30%  Similarity=0.592  Sum_probs=38.3

Q ss_pred             CHHHHhhcCCHHHHHHHHHHhhChHHHHHhhc-CHHHHHHH
Q 014282          374 NPEIALGFQSPRVQAAIMECSQNPMNIIKYQN-DKEVMSVI  413 (427)
Q Consensus       374 DPEI~aamQDPeV~aALqDI~sNPaai~KYms-NPkVm~~I  413 (427)
                      |||++.+++||.|+.+++++++||..+.+|+. ||+++++|
T Consensus         1 dP~~~~~l~~P~~~~~l~~~~~nP~~~~~~~~~nP~~~~~i   41 (41)
T smart00727        1 DPEMALRLQNPQVQSLLQDMQQNPDMLAQMLQENPQLLQLI   41 (41)
T ss_pred             CHHHHHHHcCHHHHHHHHHHHHCHHHHHHHHHhCHHhHhhC
Confidence            89999999999999999999999999999999 99998764

>smart00727 STI1 Heat shock chaperonin-binding motif

Probab=97.01  E-value=0.00056  Score=48.55  Aligned_cols=38  Identities=29%  Similarity=0.497  Sum_probs=31.6

Q ss_pred             HHHHhhcCHHHHHhhcCCCccccCCHHHHHHHhh-ChHHHHHH
Q 014282          281 TLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQ-NPEYRKQL  322 (427)
Q Consensus       281 ~l~~Mm~nPq~QqM~ypyLPe~MRNp~tfk~Mlq-NPq~rqqL  322 (427)
                      .+..+|+||.+++++--    .++||+.++.|++ ||++++++
T Consensus         3 ~~~~~l~~P~~~~~l~~----~~~nP~~~~~~~~~nP~~~~~i   41 (41)
T smart00727        3 EMALRLQNPQVQSLLQD----MQQNPDMLAQMLQENPQLLQLI   41 (41)
T ss_pred             HHHHHHcCHHHHHHHHH----HHHCHHHHHHHHHhCHHhHhhC
Confidence            45678889999987764    8889999999999 99997653

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=94.12  E-value=0.089  Score=56.16  Aligned_cols=72  Identities=26%  Similarity=0.406  Sum_probs=51.3

Q ss_pred             CccccHHHHHHhhcCHH-HHHhhcCCCccccCCHHHHHHHhhChHHHHHHHHHHHhccCCCCCchhHhhhhhcCCCChHH
Q 014282          274 GRFLTVDTLEKLMEDPQ-VQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAE  352 (427)
Q Consensus       274 ~~~~~~~~l~~Mm~nPq-~QqM~ypyLPe~MRNp~tfk~MlqNPq~rqqL~~Ml~~mgg~g~~~~~m~d~l~e~D~Nn~E  352 (427)
                      ++-..-..++.+..||+ +|+|+.||.+      +.|.-|.+||.+..+                               
T Consensus       329 ~~~~~~a~lq~i~~n~~~~~~l~s~~~~------~m~~~~s~~P~~a~~-------------------------------  371 (493)
T KOG0010|consen  329 GSPGMQAGLQMITENPSLLQQLLSPYIR------SMFQSASQNPLQAAQ-------------------------------  371 (493)
T ss_pred             CCcchhhhhhccccChhhhhhccchhhH------HHHhhhccCchhhhc-------------------------------
Confidence            33344567888888884 4556665544      556667888877444                               


Q ss_pred             HHHHHHhcCCChHHHHHHhcCCHHHHhhcCCHHHHHHHHHHhhChH
Q 014282          353 VKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPM  398 (427)
Q Consensus       353 v~q~f~~~G~tpEE~~skaM~DPEI~aamQDPeV~aALqDI~sNPa  398 (427)
                                     +.. |.||+++.+|.+|+++++|+.|++.-.
T Consensus       372 ---------------~~~-mq~p~~~~~~~np~a~~ai~qiqq~~~  401 (493)
T KOG0010|consen  372 ---------------LRQ-MQNPDVLRAMSNPRAMQAIRQIQQGLQ  401 (493)
T ss_pred             ---------------ccc-ccCchHhhhhcChHHHHHHHHHHHHHH
Confidence                           003 779999999999999999999987544

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=93.35  E-value=0.14  Score=54.66  Aligned_cols=89  Identities=21%  Similarity=0.445  Sum_probs=49.8

Q ss_pred             cHHHHHHhhcCHHHHHhhcCCCccccCCHHHHH-HHhhChHHHHHHHHHHHhccCCCCCchhHhhhhhcCCCChHHHHHH
Q 014282          278 TVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFK-LMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQ  356 (427)
Q Consensus       278 ~~~~l~~Mm~nPq~QqM~ypyLPe~MRNp~tfk-~MlqNPq~rqqL~~Ml~~mgg~g~~~~~m~d~l~e~D~Nn~Ev~q~  356 (427)
                      +-|.+..||+||-+|.|        |+|||.+. .++.||+|++.|+    +                     ++|    
T Consensus       155 npe~~~~~m~nP~vq~l--------l~Npd~mrq~I~anPqmq~lm~----~---------------------npe----  197 (493)
T KOG0010|consen  155 NPEALRQMMENPIVQSL--------LNNPDLMRQLIMANPQMQDLMQ----R---------------------NPE----  197 (493)
T ss_pred             CHHHHHHhhhChHHHHH--------hcChHHHHHHHhcCHHHHHHHh----h---------------------CCc----
Confidence            35677778888877743        45666666 4566676633332    1                     222    


Q ss_pred             HHhcCCChHHHHHHhcCCHHHH----hhcCCHHHHHHHHHHhhChHHHHHhhcCHHHHHHHHHH
Q 014282          357 FEQIGLTPEEVITKMMANPEIA----LGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKI  416 (427)
Q Consensus       357 f~~~G~tpEE~~skaM~DPEI~----aamQDPeV~aALqDI~sNPaai~KYmsNPkVm~~IqKL  416 (427)
                                 +.++++||+|+    +...||++++-+....+  .++..+.+.|.-.+++..+
T Consensus       198 -----------i~h~ln~p~i~rQtle~arNP~m~qemmrn~d--~a~SnlesiPgG~n~l~~m  248 (493)
T KOG0010|consen  198 -----------IGHLLNNPLILRQTLESARNPEMMQEMMRNQD--RAMSNLESIPGGYNALRRM  248 (493)
T ss_pred             -----------chhhhcChHHHHHHHHhccCHHHHHHHHhhcc--ccccChhcCccHHHHHHHH
Confidence                       23555555554    33466766655544444  4455556666666666555

>KOG3037 consensus Cell membrane glycoprotein [General function prediction only]

Probab=92.90  E-value=0.28  Score=50.17  Aligned_cols=56  Identities=20%  Similarity=0.490  Sum_probs=49.5

Q ss_pred             CccccHHHHHHhhcCHHHHHhhcCCCccccCCHHHHHHHhhChHHHHHHHHHHHhc
Q 014282          274 GRFLTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGM  329 (427)
Q Consensus       274 ~~~~~~~~l~~Mm~nPq~QqM~ypyLPe~MRNp~tfk~MlqNPq~rqqL~~Ml~~m  329 (427)
                      +..+.-+.+..++.||-+|+=++||||+---+.+-+.-++++|||+|+|.-+....
T Consensus       226 a~vL~~e~v~~vl~~~~v~erL~phlP~d~~~~~~i~e~l~spqF~qal~sfs~aL  281 (330)
T KOG3037|consen  226 ATVLKPEAVAPVLANPGVQERLMPHLPSDHDRAEGILELLTSPQFRQALDSFSQAL  281 (330)
T ss_pred             hhhcChHHHHHHhhCcchhhhhcccCCCCCcchHHHHHhhcCHHHHHHHHHHHHHH
Confidence            34467899999999999999999999998888888899999999999998776654

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=91.30  E-value=0.51  Score=51.11  Aligned_cols=74  Identities=18%  Similarity=0.208  Sum_probs=61.6

Q ss_pred             cCCCChHHHHHHHHhcC---------CChHHHHHHhcCCHHHHhhcCCHHHHHHHHHHhhChHHHHHhhcCHHHHHHHHH
Q 014282          345 NFDLNSAEVKQQFEQIG---------LTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITK  415 (427)
Q Consensus       345 e~D~Nn~Ev~q~f~~~G---------~tpEE~~skaM~DPEI~aamQDPeV~aALqDI~sNPaai~KYmsNPkVm~~IqK  415 (427)
                      ++|++|..+..++.+.-         .+.-.+++++-+||.....++||.+..+|+.++.||.++.-|++||-+|..+--
T Consensus        98 ~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~  177 (539)
T KOG0548|consen   98 EKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQ  177 (539)
T ss_pred             hcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHH
Confidence            46788888888773211         122356888999999999999999999999999999999999999999999887


Q ss_pred             HHH
Q 014282          416 IAE  418 (427)
Q Consensus       416 L~a  418 (427)
                      |..
T Consensus       178 l~~  180 (539)
T KOG0548|consen  178 LKG  180 (539)
T ss_pred             Hhc
Confidence            755

>PRK00523 hypothetical protein; Provisional

Probab=89.77  E-value=0.9  Score=37.79  Aligned_cols=40  Identities=18%  Similarity=0.336  Sum_probs=26.0

Q ss_pred             hhHHHHHHHH---HHH--HHHHHHHHHHHHH------HHHHHHHHhhcCCC
Q 014282          102 LFWVGVGVGL---SAL--FSFVASRLKQYAM------QQALKGMMNQMNTQ  141 (427)
Q Consensus       102 l~wiGvGVgL---sal--fs~va~~vK~yaM------qqa~KsMm~qm~~~  141 (427)
                      ++||+++|+.   +++  |-..-.+++||--      |++++.||.|||--
T Consensus         5 ~l~I~l~i~~li~G~~~Gffiark~~~k~l~~NPpine~mir~M~~QMGqK   55 (72)
T PRK00523          5 GLALGLGIPLLIVGGIIGYFVSKKMFKKQIRENPPITENMIRAMYMQMGRK   55 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHhCCC
Confidence            6777755432   223  3333445677766      89999999999943

>PRK01844 hypothetical protein; Provisional

Probab=89.68  E-value=0.94  Score=37.71  Aligned_cols=41  Identities=27%  Similarity=0.272  Sum_probs=25.4

Q ss_pred             chhHHHHHH---HHHHHHH--HHHHHHHHHHH------HHHHHHHHhhcCCC
Q 014282          101 PLFWVGVGV---GLSALFS--FVASRLKQYAM------QQALKGMMNQMNTQ  141 (427)
Q Consensus       101 Pl~wiGvGV---gLsalfs--~va~~vK~yaM------qqa~KsMm~qm~~~  141 (427)
                      -|+||+++|   +++++.+  ..-.+++||--      |++++.||.|||--
T Consensus         3 ~~~~I~l~I~~li~G~~~Gff~ark~~~k~lk~NPpine~mir~Mm~QMGqk   54 (72)
T PRK01844          3 IWLGILVGVVALVAGVALGFFIARKYMMNYLQKNPPINEQMLKMMMMQMGQK   54 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCC
Confidence            367776544   2233333  33345666665      78999999999943

>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised

Probab=80.45  E-value=5  Score=32.75  Aligned_cols=38  Identities=16%  Similarity=0.280  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHH--HHHHHHHHHHHHH------HHHHHHHHhhcCCC
Q 014282          104 WVGVGVGLSAL--FSFVASRLKQYAM------QQALKGMMNQMNTQ  141 (427)
Q Consensus       104 wiGvGVgLsal--fs~va~~vK~yaM------qqa~KsMm~qm~~~  141 (427)
                      ||-|+.+++++  |-..--+++||-.      |.+++.||.|||--
T Consensus         2 ~iilali~G~~~Gff~ar~~~~k~l~~NPpine~mir~M~~QMG~k   47 (64)
T PF03672_consen    2 LIILALIVGAVIGFFIARKYMEKQLKENPPINEKMIRAMMMQMGRK   47 (64)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCC
Confidence            44444444444  4444556777776      68999999999943

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	427
2lnm_A	62	Solution Structure Of The C-Terminal Np-Repeat Doma		6e-23

>pdb|2LNM|A Chain A, Solution Structure Of The C-Terminal Np-Repeat Domain Of Tic40, A Co- Chaperone During Protein Import Into Chloroplasts Length = 62

Iteration: 1
 Score =  105 bits (261), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 45/62 (72%), Positives = 57/62 (91%)
Query: 364 PEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPGV 423
           PEEVI+K+M NP++A+ FQ+PRVQAA+MECS+NPMNI+KYQNDKEVM V  KI++LFPG+
Sbjct: 1   PEEVISKIMENPDVAMAFQNPRVQAALMECSENPMNIMKYQNDKEVMDVFNKISQLFPGM 60
Query: 424 TG 425
           TG
Sbjct: 61  TG 62

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	427
2llw_A	71	Heat shock protein STI1; DP domain, alpha helix, c	6e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05

>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae} Length = 71

 Score = 59.8 bits (145), Expect = 6e-12
 Identities = 18/63 (28%), Positives = 30/63 (47%)

Query: 356 QFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITK 415
           Q      TPEE   + M +PE+A   Q P +Q+ + +  QNP  + ++  + EV   I  
Sbjct: 1   QPGTSNETPEETYQRAMKDPEVAAIMQDPVMQSILQQAQQNPAALQEHMKNPEVFKKIQT 60

Query: 416 IAE 418
           +  
Sbjct: 61  LIA 63

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.3 bits (158), Expect = 2e-11
 Identities = 52/359 (14%), Positives = 107/359 (29%), Gaps = 128/359 (35%)

Query: 175 QPRFTMDIPATKVEAATATDVEGKKEVKGETEVKEEPKK----YAFVDV---SPEETLQK 227
           +  F  +     V+    + +  K+E+     +                     EE +QK
Sbjct: 26  EDAFVDNFDCKDVQDMPKS-ILSKEEID---HIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81

Query: 228 SSF------DNFEDVKETSSSKDAQPPKDSQNGAAFN------YNAGSPF---------- 265
             F       N++ +     ++  QP   S     +       YN    F          
Sbjct: 82  --FVEEVLRINYKFLMSPIKTEQRQP---SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136

Query: 266 ----------------------GG-----------QSAKKEGRF------LTV---DTLE 283
                                  G            S K + +       L +   ++ E
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196

Query: 284 KLMEDPQVQKMVY------PSLPEEMRNP--------ASFKLMLQNPEYRKQLQEMLDGM 329
            ++E   +QK++Y       S  +   N         A  + +L++  Y   L  +L  +
Sbjct: 197 TVLE--MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-VLLNV 253

Query: 330 CESGE---FDG--RVL---------DSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMAN- 374
             +     F+   ++L         D L      +  +      + LTP+EV + ++   
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSA--ATTTHISLDHHSMTLTPDEVKS-LLLKY 310

Query: 375 --------PEIALGFQSPRVQAAIMECSQNPMNII---KYQNDKEVMSVI-TKIAELFP 421
                   P   L   +PR  + I E  ++ +      K+ N  ++ ++I + +  L P
Sbjct: 311 LDCRPQDLPREVLTT-NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 1e-08
 Identities = 55/403 (13%), Positives = 105/403 (26%), Gaps = 136/403 (33%)

Query: 16  LVLNY----TNFKHPTRGITGPRRSSSLAL--------PF-KLSTSRIS--ASVRAG--- 57
           L +NY    +  K   R  +   R               F K + SR+     +R     
Sbjct: 87  LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146

Query: 58  --PHQNGQV-GAGGF--ASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLS 112
             P +N  + G  G     +                             +FW+ +     
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF------------KIFWLNLK---- 190

Query: 113 ALFSFVASRLKQYAMQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTTPYPA 172
                           + +  M+ ++  Q  P             + +            
Sbjct: 191 -----------NCNSPETVLEMLQKLLYQIDP------------NWTSRSDHSSNIKLRI 227

Query: 173 ASQPRFTMDIPATKVEAATATDVEGKKEVKGETEVKEEPKKYAFV---DVSPEETLQKSS 229
                                    + E++    +K +P +   +   +V   +     +
Sbjct: 228 ----------------------HSIQAELR--RLLKSKPYENCLLVLLNVQNAKAWN--A 261

Query: 230 FDNFEDVKE--TSSSKDAQPPKDSQNGAAFNYNAGSPFGGQSAKKEGRFLTVDTLEKLME 287
           F+     K   T+        +  Q     +    +     S       LT D ++ L+ 
Sbjct: 262 FNL--SCKILLTT--------RFKQVTDFLSAATTTHI---SLDHHSMTLTPDEVKSLLL 308

Query: 288 DPQVQKMVYPSLPEEMR--NP-------ASFKLMLQNPEYRKQLQ-EMLDGMCESGEFDG 337
             +        LP E+   NP        S +  L   +  K +  + L  + ES     
Sbjct: 309 --KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES----- 361

Query: 338 RVLDSLKNFDLNSAEVKQQFEQIGLTPEEV-ITKMMANPEIAL 379
               SL    L  AE ++ F+++ + P    I      P I L
Sbjct: 362 ----SLNV--LEPAEYRKMFDRLSVFPPSAHI------PTILL 392

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 7e-05
 Identities = 39/312 (12%), Positives = 92/312 (29%), Gaps = 92/312 (29%)

Query: 93  PPSSNVGSPLFWVGVGVGLSALFSFVASRLKQY------AMQQALKGMMNQMNTQN--KP 144
           P      +P     + + ++       +    +       +   ++  +N +      K 
Sbjct: 319 PREVLTTNPRR---LSI-IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374

Query: 145 FGN-AAFPQGSPFPFPNPPASGPTTPYPAASQPRFTMDIPATKV-----EAATATDVEG- 197
           F   + FP  +                           IP T +          +DV   
Sbjct: 375 FDRLSVFPPSAH--------------------------IP-TILLSLIWFDVIKSDVMVV 407

Query: 198 KKEVKGETEVKEEPKKYAF----------VDVSPEETLQKSSFDNFEDVKETSSSKDAQP 247
             ++   + V+++PK+             V +  E  L +S  D++   K   S     P
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467

Query: 248 PKDSQNGAAFNYNAGSPFG--GQSAKKEGRFLTVDTLEKL------MEDPQVQKMVYPSL 299
             D      +++      G   ++ +   R         +      +E    QK+ + S 
Sbjct: 468 YLD---QYFYSH-----IGHHLKNIEHPERM---TLFRMVFLDFRFLE----QKIRHDST 512

Query: 300 PEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAE--VKQQF 357
                       + Q   Y+         +C++     R+++++ +F     E  +  ++
Sbjct: 513 AWNASGS-ILNTLQQLKFYKPY-------ICDNDPKYERLVNAILDFLPKIEENLICSKY 564

Query: 358 E---QIGLTPEE 366
               +I L  E+
Sbjct: 565 TDLLRIALMAED 576

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	427
2lnm_A	62	Protein TIC 40, chloroplastic; translocon, import,	99.8
2llw_A	71	Heat shock protein STI1; DP domain, alpha helix, c	99.75
2llv_A	71	Heat shock protein STI1; DP domain, alpha helix, c	99.29
2lnm_A	62	Protein TIC 40, chloroplastic; translocon, import,	97.14
2llw_A	71	Heat shock protein STI1; DP domain, alpha helix, c	96.5
2kqz_A	155	Proteasomal ubiquitin receptor ADRM1; proteasome,	95.36
2kr0_A	411	Proteasomal ubiquitin receptor ADRM1; proteasome,	93.96
2qsf_X	171	RAD23, UV excision repair protein RAD23; alpha-bet	92.27
2llv_A	71	Heat shock protein STI1; DP domain, alpha helix, c	85.41

>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}

Probab=99.80  E-value=8.3e-20  Score=140.18  Aligned_cols=62  Identities=73%  Similarity=1.238  Sum_probs=60.1

Q ss_pred             hHHHHHHhcCCHHHHhhcCCHHHHHHHHHHhhChHHHHHhhcCHHHHHHHHHHHHHCCCCCC
Q 014282          364 PEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPGVTG  425 (427)
Q Consensus       364 pEE~~skaM~DPEI~aamQDPeV~aALqDI~sNPaai~KYmsNPkVm~~IqKL~a~FgG~~~  425 (427)
                      ||++++|+++|||++++|+||+|+++|+||++||+++++|++||+|+.+|+||.++|||.+|
T Consensus         1 ~~e~~~kl~~dPe~~~~m~dP~~~~~lq~i~~NP~~~~~~~~dP~v~~~~~~L~~~~~g~~~   62 (62)
T 2lnm_A            1 PEEVISKIMENPDVAMAFQNPRVQAALMECSENPMNIMKYQNDKEVMDVFNKISQLFPGMTG   62 (62)
T ss_dssp             CHHHHHHHTTSHHHHHHTTSHHHHHHHHHHTTCGGGHHHHTTCHHHHHHHHHHHHHSSSCCC
T ss_pred             CHHHHHHHHcChHHHHHcCCHHHHHHHHHHHHCHHHHHHHHhChHHHHHHHHHHHHhCCCCC
Confidence            57899999999999999999999999999999999999999999999999999999999876

>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=99.75  E-value=1.1e-18  Score=138.54  Aligned_cols=60  Identities=28%  Similarity=0.436  Sum_probs=58.0

Q ss_pred             hcCCChHHHHHHhcCCHHHHhhcCCHHHHHHHHHHhhChHHHHHhhcCHHHHHHHHHHHH
Q 014282          359 QIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAE  418 (427)
Q Consensus       359 ~~G~tpEE~~skaM~DPEI~aamQDPeV~aALqDI~sNPaai~KYmsNPkVm~~IqKL~a  418 (427)
                      ..|+++||++.++|+||||+++|+||+|+++|+||++||++++||++||+|+++|+||++
T Consensus         4 ~~~e~~ee~~~~~m~dPEi~~im~DP~~~~~lq~~~~NP~~~~k~~~nP~v~~~i~kl~~   63 (71)
T 2llw_A            4 TSNETPEETYQRAMKDPEVAAIMQDPVMQSILQQAQQNPAALQEHMKNPEVFKKIQTLIA   63 (71)
T ss_dssp             TCCSCHHHHHHHHHHSHHHHHHHTCTHHHHHHHHHHHCHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHhcCHHHHHHhCCHHHHHHHHHHHHCHHHHHHHHhCHHHHHHHHHHHH
Confidence            468999999999999999999999999999999999999999999999999999999976

>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=99.29  E-value=4.9e-13  Score=105.26  Aligned_cols=53  Identities=21%  Similarity=0.414  Sum_probs=50.1

Q ss_pred             HHHHHhcCCHHHHhhcCCHHHHHHHHHHhhChHHHHH-hhcCHHHHHHHHHHHH
Q 014282          366 EVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIK-YQNDKEVMSVITKIAE  418 (427)
Q Consensus       366 E~~skaM~DPEI~aamQDPeV~aALqDI~sNPaai~K-YmsNPkVm~~IqKL~a  418 (427)
                      +.++++++|||++++|+||+|+++|+||++||++|++ |++||+|+++|.||..
T Consensus        14 ~~~~kl~~dP~t~~~~~DP~~~~~lq~i~~NP~~i~~~~~~dPrv~~~l~~L~g   67 (71)
T 2llv_A           14 NLIENLKKNPKTSEMMKDPQLVAKLIGYKQNPQAIGQDLFTDPRLMTIMATLMG   67 (71)
T ss_dssp             SCHHHHHHSSTTHHHHHSCTHHHHHHHHHHSCTTHHHHTTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHcChHHHHHhcCHHHHHHHHHHHHCHHHHHHHHhhCcHHHHHHHHHHc
Confidence            3478999999999999999999999999999999999 9999999999999964

>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}

Probab=97.14  E-value=0.00051  Score=52.45  Aligned_cols=48  Identities=13%  Similarity=0.150  Sum_probs=40.9

Q ss_pred             HHHhhcCHHHHHhhcCCCccccCCHHHHHHHhhChHHHHHHHHHHHhccCCC
Q 014282          282 LEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESG  333 (427)
Q Consensus       282 l~~Mm~nPq~QqM~ypyLPe~MRNp~tfk~MlqNPq~rqqL~~Ml~~mgg~g  333 (427)
                      +..+|+||+|++++.-    .++||..+..+++||.+++.|+.+++-+||-+
T Consensus        14 ~~~~m~dP~~~~~lq~----i~~NP~~~~~~~~dP~v~~~~~~L~~~~~g~~   61 (62)
T 2lnm_A           14 VAMAFQNPRVQAALME----CSENPMNIMKYQNDKEVMDVFNKISQLFPGMT   61 (62)
T ss_dssp             HHHHTTSHHHHHHHHH----HTTCGGGHHHHTTCHHHHHHHHHHHHHSSSCC
T ss_pred             HHHHcCCHHHHHHHHH----HHHCHHHHHHHHhChHHHHHHHHHHHHhCCCC
Confidence            5566777777777665    88999999999999999999999999998854

>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=96.50  E-value=0.0019  Score=51.21  Aligned_cols=43  Identities=28%  Similarity=0.570  Sum_probs=34.1

Q ss_pred             HHHhhcCHHHHHhhcCCCccccCCHHHHHHHhhChHHHHHHHHHHHh
Q 014282          282 LEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDG  328 (427)
Q Consensus       282 l~~Mm~nPq~QqM~ypyLPe~MRNp~tfk~MlqNPq~rqqL~~Ml~~  328 (427)
                      |..+|+||+|++++.-    .|+||+.+..+|+||.+++.|+.+.+.
T Consensus        22 i~~im~DP~~~~~lq~----~~~NP~~~~k~~~nP~v~~~i~kl~~a   64 (71)
T 2llw_A           22 VAAIMQDPVMQSILQQ----AQQNPAALQEHMKNPEVFKKIQTLIAA   64 (71)
T ss_dssp             HHHHHTCTHHHHHHHH----HHHCHHHHHHHHHSHHHHHHHHHHHHT
T ss_pred             HHHHhCCHHHHHHHHH----HHHCHHHHHHHHhCHHHHHHHHHHHHc
Confidence            4456667777766665    788999999999999999999988764

>2kqz_A Proteasomal ubiquitin receptor ADRM1; proteasome, UCH37-binding domain, protein binding; NMR {Homo sapiens} PDB: 2l5v_A

Probab=95.36  E-value=0.0045  Score=55.39  Aligned_cols=51  Identities=20%  Similarity=0.420  Sum_probs=44.5

Q ss_pred             ccccHHHHHHhhcCHHHHHhhcCCCccccC---CHHHHHHHhhChHHHHHHHHH
Q 014282          275 RFLTVDTLEKLMEDPQVQKMVYPSLPEEMR---NPASFKLMLQNPEYRKQLQEM  325 (427)
Q Consensus       275 ~~~~~~~l~~Mm~nPq~QqM~ypyLPe~MR---Np~tfk~MlqNPq~rqqL~~M  325 (427)
                      ..++.+.|..+++||.+++-+++|||+.-+   +.+-++..++.|||+|.|.-+
T Consensus        38 dvLt~e~l~~ll~d~~~~~~L~~~LP~~~~~~~~~e~L~~~l~SPQF~Qal~~f   91 (155)
T 2kqz_A           38 SVLTPEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMF   91 (155)
T ss_dssp             HHTCTTTSHHHHHSHHHHHHHHHHSCSSCCCCSSHHHHHSSCCSHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHcCHHHHHHHHhhCCCCCCCCCCHHHHHHHHcCHHHHHHHHHH
Confidence            346677888999999999999999999865   889999999999999998654

>2kr0_A Proteasomal ubiquitin receptor ADRM1; proteasome, 19S regulator, protein binding; NMR {Homo sapiens}

Probab=93.96  E-value=0.037  Score=56.30  Aligned_cols=55  Identities=18%  Similarity=0.392  Sum_probs=45.8

Q ss_pred             CccccHHHHHHhhcCHHHHHhhcCCCcccc---CCHHHHHHHhhChHHHHHHHHHHHh
Q 014282          274 GRFLTVDTLEKLMEDPQVQKMVYPSLPEEM---RNPASFKLMLQNPEYRKQLQEMLDG  328 (427)
Q Consensus       274 ~~~~~~~~l~~Mm~nPq~QqM~ypyLPe~M---RNp~tfk~MlqNPq~rqqL~~Ml~~  328 (427)
                      ...|+.|.|..+++||++++-+.+||||.=   +..+-++..|+.|||+|.|+-+=..
T Consensus       293 ~dvLt~e~l~pll~d~e~~erL~~~LP~~~~~~~t~e~L~e~l~SPQF~QaL~~fs~A  350 (411)
T 2kr0_A          293 ASVLTPEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAA  350 (411)
T ss_dssp             GGTSCHHHHHHHHTSHHHHHHHGGGCCSSCCCCCSHHHHTTSCCSHHHHHHHHHHHHH
T ss_pred             HHhhCHHHHHHHhcCHHHHHHHHhhCCCCcCcCCCHHHHHHHhcCHHHHHHHHHHHHH
Confidence            345778999999999999999999999853   3778888889999999999655433

>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=85.41  E-value=0.2  Score=39.06  Aligned_cols=23  Identities=17%  Similarity=0.420  Sum_probs=13.5

Q ss_pred             CHHHHHHHhhChHHHHHHHHHHHh
Q 014282          305 NPASFKLMLQNPEYRKQLQEMLDG  328 (427)
Q Consensus       305 Np~tfk~MlqNPq~rqqL~~Ml~~  328 (427)
                      ||+|.++ |++|+|++.|+++.++
T Consensus        22 dP~t~~~-~~DP~~~~~lq~i~~N   44 (71)
T 2llv_A           22 NPKTSEM-MKDPQLVAKLIGYKQN   44 (71)
T ss_dssp             SSTTHHH-HHSCTHHHHHHHHHHS
T ss_pred             ChHHHHH-hcCHHHHHHHHHHHHC
Confidence            4444443 3667777666666655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00