Citrus Sinensis ID: 014285
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 427 | 2.2.26 [Sep-21-2011] | |||||||
| O34508 | 366 | L-Ala-D/L-Glu epimerase O | yes | no | 0.798 | 0.931 | 0.337 | 2e-43 | |
| Q9WXM1 | 345 | L-Ala-D/L-Glu epimerase O | yes | no | 0.751 | 0.930 | 0.315 | 9e-37 | |
| Q97MK4 | 358 | L-Ala-D/L-Glu epimerase O | yes | no | 0.761 | 0.907 | 0.320 | 3e-33 | |
| P42428 | 372 | Chloromuconate cycloisome | yes | no | 0.697 | 0.801 | 0.274 | 7e-13 | |
| O33949 | 385 | Muconate cycloisomerase 1 | N/A | no | 0.819 | 0.909 | 0.243 | 2e-12 | |
| P08310 | 375 | Muconate cycloisomerase 1 | yes | no | 0.711 | 0.810 | 0.268 | 3e-12 | |
| Q43931 | 370 | Muconate cycloisomerase 1 | yes | no | 0.716 | 0.827 | 0.24 | 3e-11 | |
| P51981 | 321 | L-Ala-D/L-Glu epimerase O | N/A | no | 0.573 | 0.763 | 0.271 | 8e-11 | |
| P95608 | 373 | Muconate cycloisomerase 1 | no | no | 0.725 | 0.831 | 0.252 | 3e-10 | |
| O34514 | 371 | o-succinylbenzoate syntha | no | no | 0.702 | 0.808 | 0.203 | 3e-09 |
| >sp|O34508|AEEP_BACSU L-Ala-D/L-Glu epimerase OS=Bacillus subtilis (strain 168) GN=ykfB PE=1 SV=1 | Back alignment and function desciption |
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Score = 177 bits (448), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 121/358 (33%), Positives = 181/358 (50%), Gaps = 17/358 (4%)
Query: 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVK 128
R E + V L+ P L +V E+V +R+ +G VGWGE ++TGD ++
Sbjct: 5 RIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGD---SMDS 61
Query: 129 VREACQFLRQSPPTTLNFA-----LDEIARILPGSEFASVRAGVEMALIDAVANSIDIPL 183
+ A + + + A L +I +L G+ S +A VEMAL D A +PL
Sbjct: 62 IESAIHHVLKPALLGKSLAGYEAILHDIQHLLTGN--MSAKAAVEMALYDGWAQMCGLPL 119
Query: 184 WRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIH 242
+++ GG ++L T T+ SP E + A Y K GF TLK+ VG+ +I D +Q I
Sbjct: 120 YQMLGGYRDTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIR 179
Query: 243 A-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARD 301
V LDAN+G+ +EAV + K+ D G+ L EQPVH+DD +GL V++ A D
Sbjct: 180 KRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKVTD-ATD 238
Query: 302 TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKS-GLHLMID 360
T ++ADES + +V+Q A ++NIKL K G + + I A ++ G+ M+
Sbjct: 239 T---PIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVG 295
Query: 361 GMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQG 418
MIET+L A H AA I + + P +L D F GG SG+ + G G
Sbjct: 296 SMIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLG 353
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Catalyzes the epimerization of L-Ala-D-Glu to L-Ala-L-Glu and has probably a role in the metabolism of the murein peptide, of which L-Ala-D-Glu is a component. Is also able to catalyze the reverse reaction and the epimerization of the other Ala-X dipeptides L-Ala-L-Asp, L-Ala-L-Leu, L-Ala-L-Met, and L-Ala-L-Ser. Is not able to epimerize other L-Ala-X dipeptides. Is also active with L-Ser-L-Glu and, oddly, L-Pro-L-Glu, but not with L-Glu-L-Glu, L-Lys-L-Glu, L-Lys-L-Ala, or D-Ala-D-Ala. Bacillus subtilis (strain 168) (taxid: 224308) EC: 5EC: .EC: 1EC: .EC: 1EC: .EC: nEC: 1 |
| >sp|Q9WXM1|AEEP_THEMA L-Ala-D/L-Glu epimerase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=TM_0006 PE=1 SV=1 | Back alignment and function description |
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Score = 154 bits (390), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 169/336 (50%), Gaps = 15/336 (4%)
Query: 73 RELNVALS-------APLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKA 125
R +NV LS P + S NV + + L +G G+GE + V G++ +A
Sbjct: 3 RIVNVKLSLKRYEYEKPFHITGSVSSESRNVEVEIVLESGVKGYGEASPSFRVNGERVEA 62
Query: 126 LVKVREACQFLRQSPPTTLNFA-LDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLW 184
L+ + A + + + N+A + EI L G F S++A V+ A +DA++ + +
Sbjct: 63 LLAIENAVREM-ITGIDVRNYARIFEITDRLFG--FPSLKAAVQFATLDALSQELGTQVC 119
Query: 185 RLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAV 244
L GG + + T T+ + + A K + GF +K+ VG N+ D + ++ I V
Sbjct: 120 YLLGGKRDEIETDKTVGIDTVENRVKEAKKIFEEGFRVIKIKVGENLKEDIEAVEEIAKV 179
Query: 245 HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG 304
+I+DAN GYT +EAVE + G+ ++EQPV R+D GL F R
Sbjct: 180 TRGAKYIVDANMGYTQKEAVEFARAVYQKGIDIAVYEQPVRREDIEGL----KFVRFHSP 235
Query: 305 ISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIE 364
V ADES R+ DV ++++E VNIKL K G+ L I++ SGL LMI M E
Sbjct: 236 FPVAADESARTKFDVMRLVKEEAVDYVNIKLMKSGISDALAIVEIAESSGLKLMIGCMGE 295
Query: 365 TRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVG 400
+ L ++H A G G ++ +L++ +L E+ F G
Sbjct: 296 SSLGINQSVHFALGTGAFEFHDLDSHLMLKEEVFRG 331
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Catalyzes the epimerization of L-Ala-D-Glu to L-Ala-L-Glu and has probably a role in the metabolism of the murein peptide, of which L-Ala-D-Glu is a component. Is also able to catalyze the reverse reaction and the epimerization of a broad range of other dipeptides; is most efficient with L-Ala-D/L-Phe, L-Ala-D/L-Tyr, and L-Ala-D/L-His. Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274) EC: 5 EC: . EC: 1 EC: . EC: 1 EC: . EC: n EC: 1 |
| >sp|Q97MK4|AEEP_CLOAB L-Ala-D/L-Glu epimerase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=CA_C0192 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 143 bits (360), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 111/346 (32%), Positives = 175/346 (50%), Gaps = 21/346 (6%)
Query: 75 LNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQ 134
L+V L P + SV +V +V +++ G VG+G A LVTGD T+++
Sbjct: 11 LSVPLKKPFKTAVRSVNSVNDVVVKIITDTGNVGFGSAASTGLVTGDITESIEGAIN--N 68
Query: 135 FLRQSPPTTLNFALDEIARILPGSEF-----ASVRAGVEMALIDAVANSIDIPLWRLFGG 189
++++S + +++ IL + S +A V++AL D PL++L GG
Sbjct: 69 YIKRS---IVGMDIEDFEAILIKLDNCIVGNTSAKAAVDIALYDLYGQRYGAPLYKLLGG 125
Query: 190 ASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIH-AVHPHC 248
N L T ITI SP E S + KLG+ TLK+ VG+N D ++ I A+
Sbjct: 126 FRNKLETDITISVNSPEEMSRDSVDAVKLGYKTLKIKVGKNPKLDIKRMREIRKAIGYEV 185
Query: 249 SFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVV 308
+ +DAN+G+ +EA+ L ++ + G+ L EQPV + GL V+ D I V+
Sbjct: 186 NLRIDANQGWQPKEAIRALNEIENEGLKIELVEQPVKAWNLEGLKMVT----DNVNIPVM 241
Query: 309 ADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGMIETRL 367
ADES S D +VM+ ++NIKL K G+ L+I G+ M+ M+E ++
Sbjct: 242 ADESVFSPKDAARVMEMRACDLINIKLMKTGGIHNALKICALAEVYGMECMLGCMLEGKV 301
Query: 368 ATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTN 413
+ A+HLAA I ++L+ P L S D VG GA+Y+ +N
Sbjct: 302 SVTAAVHLAAAKRIITKIDLDGPVLCSRDDVVG-----GAMYDNSN 342
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Catalyzes the epimerization of L-Ala-D-Glu to L-Ala-L-Glu and has probably a role in the metabolism of the murein peptide, of which L-Ala-D-Glu is a component. Is also able to catalyze the epimerization of L-Ala-D-Asp. Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (taxid: 272562) EC: 5 EC: . EC: 1 EC: . EC: 1 EC: . EC: n EC: 1 |
| >sp|P42428|TFDD2_CUPPJ Chloromuconate cycloisomerase OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) GN=tfdDII PE=3 SV=2 | Back alignment and function description |
|---|
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 148/331 (44%), Gaps = 33/331 (9%)
Query: 95 NVAIRVELSNGCVGWGE--VAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIA 152
+V IR+ G VG GE P +GD +A+ +A +P ALD +
Sbjct: 23 SVLIRLHTKGGIVGIGESITPCGPWWSGDSVEAI----QATINHYLAPLVVGEPALDA-S 77
Query: 153 RILP-------GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVS 204
RI+ G+ FA +AG+EMAL+DAV +D P+ L GG + LS A +
Sbjct: 78 RIMAKLHGRVAGNAFA--KAGIEMALLDAVGKIVDAPIHVLLGGRFRDRLSVAWPLATGD 135
Query: 205 PAEASELASKYCKLGFS-TLKLNVGR-NITADFDVLQAI-HAVHPHCSFILDANEGYTSE 261
+ + A + + G + KL +G + D AI + S +D NE +
Sbjct: 136 VNQEVDEAFRMLEAGKAGAFKLKMGALPLAQDLRRALAIAKELEGKASLRVDPNEAWDEP 195
Query: 262 EAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQK 321
+ L L GV + EQPV R + + + AR ++ DE +SL+D +
Sbjct: 196 TTMRALAPLEAAGV--EIIEQPVARWNLDAMARIHRQARSM----LLIDEGVQSLHDASE 249
Query: 322 VMQENLASVVNIKLAKFGVLGTLQ-IIKATRKSGLHLMIDGMIETRLATGFALHLAAGLG 380
V++ A +V++K+ K G + + + G+H+ + +ET + T + LAA +
Sbjct: 250 VVKRAAAGLVSLKIMKTGGMRPARAMADIANAGGMHVYMGTFLETSIGTAANMQLAASIE 309
Query: 381 CIKY-VNLNTPFLLSEDPFVGGCEVSGAIYN 410
+ Y + P L+ ED CEV A+Y
Sbjct: 310 SLPYGGEVIGPLLIEEDL----CEVP-AVYK 335
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Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (taxid: 264198) EC: 5 EC: . EC: 5 EC: . EC: 1 EC: . EC: 7 |
| >sp|O33949|CATB2_ACILW Muconate cycloisomerase 1-2 OS=Acinetobacter lwoffii GN=catB2 PE=3 SV=2 | Back alignment and function description |
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Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 90/370 (24%), Positives = 159/370 (42%), Gaps = 20/370 (5%)
Query: 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVP-LVTGDQT 123
V ++ E ++V P L ++++ V +R+ ++G VG GE + L G+++
Sbjct: 6 VKIESVETILVDVPTIRPHRLSVATMNCQTLVLVRIRCADGVVGVGEGTTIGGLAYGEES 65
Query: 124 KALVKVREACQF---LRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSID 180
+KV F L+ T A+ + + G+ FA R+ VE AL DA A +
Sbjct: 66 PESIKVNIDTYFAPLLKGLDATRPGAAMATLRGLFQGNRFA--RSAVETALFDAQAQRLG 123
Query: 181 IPLWRLFGGA-SNSLSTAITIPAVSPAEASELASK-YCKLGFSTLKLNVGRNITADFDVL 238
+PL LFGG +S+ A T+ + + A + + KL +G AD DV
Sbjct: 124 VPLSELFGGRIRDSVDVAWTLASGDTTRDIDEAERVFEAKRHRVFKLKIGSRALAD-DVA 182
Query: 239 QAI---HAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDV 295
+ A+ +D N+ +T EA+ + D V L EQP+ ++ +GL +
Sbjct: 183 HVVAIQKALQGRGEVRVDVNQAWTESEAIWAGKRFADASV--ALIEQPIAAENRAGLKRL 240
Query: 296 SNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVL-GTLQIIKATRKSG 354
++ A+ + ++ADE+ D + A V +K+A+ G L G + +
Sbjct: 241 TDLAQ----VPIMADEALHGPADAFALASARAADVFAVKIAQSGGLSGAANVAAIALAAN 296
Query: 355 LHLMIDGMIETRLATGFALHLAAGLGCIKY-VNLNTPFLLSEDPFVGGCEVSGAIYNFTN 413
+ L M+E + T + L + G +K+ L P LL+E+ + +
Sbjct: 297 IDLYGGTMLEGAVGTIASAQLFSTFGELKWGTELFGPLLLTEEILTEPLRYENFVLHLPQ 356
Query: 414 ARGQGGFLKW 423
G G L W
Sbjct: 357 GPGLGITLDW 366
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Catalyzes a syn cycloisomerization. Acinetobacter lwoffii (taxid: 28090) EC: 5 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 |
| >sp|P08310|CATB_PSEPU Muconate cycloisomerase 1 OS=Pseudomonas putida GN=catB PE=1 SV=4 | Back alignment and function description |
|---|
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 88/328 (26%), Positives = 149/328 (45%), Gaps = 24/328 (7%)
Query: 82 PLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVP-LVTGDQTKALVKVREACQF---LR 137
P L + +++ V IRV S+G G GE + L G ++ +K L
Sbjct: 23 PHKLAMHTMQTQTLVLIRVRCSDGVEGIGEATTIGGLAYGYESPEGIKANIDAHLAPALV 82
Query: 138 QSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG-ASNSLST 196
P +N A+ ++ ++ G+ FA ++G+E AL+DA + +P+ L GG +SL
Sbjct: 83 GLPADNINAAMLKLDKLAKGNTFA--KSGIESALLDAQGKRLGLPVSELLGGRVRDSLEV 140
Query: 197 AITIPAVSPAEASELASKYCKLG-FSTLKLNVGRN-ITADFDVLQAI-HAVHPHCSFILD 253
A T+ + A A ++ KL +G N + D + AI + S +D
Sbjct: 141 AWTLASGDTARDIAEAQHMLEIRRHRVFKLKIGANPLAQDLKHVVAIKRELGDSASVRVD 200
Query: 254 ANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESC 313
N+ + +A+ L D G+ L EQP+ R + SG ++ + ++ADES
Sbjct: 201 VNQYWDESQAIRACQVLGDNGI--DLIEQPISRINRSGQVRLNQRS----PAPIMADESI 254
Query: 314 RSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLMIDGMIETRLAT 369
S+ D + + AS+ +K+AK G VL T QI +A +G+ L M+E + T
Sbjct: 255 ESVEDAFSLAADGAASIFALKIAKNGGPRAVLRTAQIAEA---AGIALYGGTMLEGSIGT 311
Query: 370 GFALHLAAGLGCIKY-VNLNTPFLLSED 396
+ H L + + L P LL+E+
Sbjct: 312 LASAHAFLTLRQLTWGTELFGPLLLTEE 339
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Catalyzes a syn cycloisomerization. Pseudomonas putida (taxid: 303) EC: 5 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q43931|CATB_ACIAD Muconate cycloisomerase 1 OS=Acinetobacter sp. (strain ADP1) GN=catB PE=3 SV=2 | Back alignment and function description |
|---|
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/325 (24%), Positives = 154/325 (47%), Gaps = 19/325 (5%)
Query: 82 PLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV-PLVTGDQTKALVKVREACQF----L 136
P L +++++ V I++ +G VGWGE + L G+++ VK F L
Sbjct: 17 PHKLSVTTMQTQTLVLIKIITEDGIVGWGEATTIGGLNYGEESPESVKANIDTYFKPLLL 76
Query: 137 RQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLS 195
P + L I + + G+ FA + ++ AL++ A +++P+ L GG + L
Sbjct: 77 SIKAPLNVAQTLKLIRKSINGNRFA--KCAIQTALLEIQAKRLNVPVSELLGGRIRDRLP 134
Query: 196 TAITIPAVSPAEASELASKYCKLG-FSTLKLNVGRN-ITADFDVLQAI-HAVHPHCSFIL 252
T+ + + A K +L +T KL +G N + D D + AI A+ P S +
Sbjct: 135 VLWTLASGDTDKDIAEAKKMIELKRHNTFKLKIGSNPLQHDVDHVIAIKKALGPEISVRV 194
Query: 253 DANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADES 312
D N ++ E V+ + +L D G+ L EQP ++ L ++ AR + ++++ADE
Sbjct: 195 DVNRAWSELECVKGIQQLQDGGI--DLIEQPCAIENTDALARLT--AR--FDVAIMADEV 248
Query: 313 CRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGMIETRLATGF 371
+ ++ +++ A V +K+ + G++ ++ K R +G+ L M+E + +
Sbjct: 249 LTGPDSAYRIAKKSGADVFAVKVEQSGGLIEACEVAKIARLAGISLYGGTMLEGPVGSIA 308
Query: 372 ALHLAAGLGCIKY-VNLNTPFLLSE 395
+ H + +++ L P LL++
Sbjct: 309 SAHAFSTFETLEFGTELFGPLLLTQ 333
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Catalyzes a syn cycloisomerization. Acinetobacter sp. (strain ADP1) (taxid: 62977) EC: 5 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 |
| >sp|P51981|AEEP_ECOLI L-Ala-D/L-Glu epimerase OS=Escherichia coli (strain K12) GN=ycjG PE=1 SV=2 | Back alignment and function description |
|---|
Score = 68.6 bits (166), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 119/265 (44%), Gaps = 20/265 (7%)
Query: 134 QFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFG-GASN 192
Q + P +E+ +ILP + R ++ AL D A L L G
Sbjct: 61 QIMSVVPQLEKGLTREELQKILPA---GAARNALDCALWDLAARRQQQSLADLIGITLPE 117
Query: 193 SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFIL 252
++ TA T+ +P + + AS + G LK+ + ++ ++ V AI P + I+
Sbjct: 118 TVITAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDNHLISERMV--AIRTAVPDATLIV 175
Query: 253 DANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADES 312
DANE + +E L D+GV + EQP+ D + L NF + + + ADES
Sbjct: 176 DANESWRAEGLAARCQLLADLGV--AMLEQPLPAQDDAALE---NF---IHPLPICADES 227
Query: 313 CRSLNDVQKVMQENLASVVNIKLAKFGVLG-TLQIIKATRKSGLHLMIDGMIETRLATGF 371
C + ++++ + + +VNIKL K G L L + R G LM+ M+ T A
Sbjct: 228 CHTRSNLKAL--KGRYEMVNIKLDKTGGLTEALALATEARAQGFSLMLGCMLCTSRAISA 285
Query: 372 ALHLAAGLGCIKYVNLNTPFLLSED 396
AL L + + +L+ P L+ D
Sbjct: 286 ALPLVPQ---VSFADLDGPTWLAVD 307
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Catalyzes the epimerization of L-Ala-D-Glu to L-Ala-L-Glu and has a role in the recycling of the murein peptide, of which L-Ala-D-Glu is a component. Is also able to catalyze the reverse reaction and the epimerization of all the L-Ala-X dipeptides, except L-Ala-L-Arg, L-Ala-L-Lys and L-Ala-L-Pro. Is also active with L-Gly-L-Glu, L-Phe-L-Glu, and L-Ser-L-Glu, but not with L-Glu-L-Glu, L-Lys-L-Glu, L-Pro-L-Glu, L-Lys-L-Ala, or D-Ala-D-Ala. Escherichia coli (strain K12) (taxid: 83333) EC: 5 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|P95608|CATB_RHOOP Muconate cycloisomerase 1 OS=Rhodococcus opacus GN=catB PE=1 SV=1 | Back alignment and function description |
|---|
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 85/336 (25%), Positives = 141/336 (41%), Gaps = 26/336 (7%)
Query: 75 LNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTKALVKVREA 132
L+V L P +S+ + + V + G G+GE V P G+ + + + E
Sbjct: 14 LDVPLVRPHKFATTSMTAQPLLLVAVTTAGGVTGYGEGVVPGGPWWGGESVETMQAIVE- 72
Query: 133 CQFLRQSPPTTLNFALDEIARILPGSE--FASVR---AGVEMALIDAVANSIDIPLWRLF 187
R P L +DEI I+P E A+ R A V++AL DA A S+ +P+ L
Sbjct: 73 ----RYIVPVLLGRGVDEITGIMPDIERVVANARFAKAAVDVALHDAWARSLGVPVHTLL 128
Query: 188 GGASNSLSTAITIPAVSPA-----EASELASKYCKLGFSTLKLNVGRNITADFDVLQAIH 242
GGA +PA EA +L F LK+ V+Q
Sbjct: 129 GGAFRKSVDVTWALGAAPAEEIIEEALDLVESKRHFSFK-LKMGALDPAVDTARVVQIAQ 187
Query: 243 AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDT 302
A+ +D N + A++ + +L + GV L EQP + L +++
Sbjct: 188 ALQGKAGVRIDVNARWDRLTALKYVPRLVEGGV--ELIEQPTPGEQLEVLAELNRLVP-- 243
Query: 303 YGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVL-GTLQIIKATRKSGLHLMIDG 361
+ V+ADES ++ +D +V + A V+ +K K G L + +++ + +G+
Sbjct: 244 --VPVMADESVQTPHDALEVARRGAADVIALKTTKCGGLQKSREVVAIAKAAGIACHGAT 301
Query: 362 MIETRLATGFALHLAAGLGCIKY-VNLNTPFLLSED 396
IE + T ++H A I + L P L SE+
Sbjct: 302 SIEGPIGTAASIHFACAEPGIDFGTELFGPLLFSEE 337
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Rhodococcus opacus (taxid: 37919) EC: 5 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 |
| >sp|O34514|MENC_BACSU o-succinylbenzoate synthase OS=Bacillus subtilis (strain 168) GN=menC PE=1 SV=1 | Back alignment and function description |
|---|
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/319 (20%), Positives = 142/319 (44%), Gaps = 19/319 (5%)
Query: 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQ 122
+++++ L++ L P + +++ + + + ++G GWGEV+ P T +
Sbjct: 2 IEIEKITLYHLSMNLKKPFKNSIETLQERKFLIVEAIDTSGVTGWGEVSAFSSPWYTEET 61
Query: 123 TKALVKVREACQFLRQSPPTTLNF---ALDEIARILPGSEFASVRAGVEMALIDAVANSI 179
+ + + F+ N D +AR G+ A +AG+E A+ D A
Sbjct: 62 IGTCLHMLKDF-FIPNVVGREFNHPSEVPDSLAR-YKGNRMA--KAGLESAVWDIYAKKK 117
Query: 180 DIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQ 239
+ L GG + + + + + + Y K G+ +K+ + D ++++
Sbjct: 118 GVSLAEALGGTRDKVPAGVVVGLAPLDDMLKEIESYQKEGYQRIKIKI--QPGQDVELVK 175
Query: 240 AIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFA 299
AI + P + DAN Y ++ + L +L+D ++ + EQP+ DD +
Sbjct: 176 AIRSRFPTIPLMADANSSYELKD-ISRLKELDDYHLM--MIEQPLQADDIVDHRHLQKHL 232
Query: 300 RDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLG-TLQIIKATRKSGLHLM 358
+ ++ DES S++D ++ ++ ++NIK ++ G L L+I ++ + +
Sbjct: 233 K----TAICLDESICSVDDARRAIELGSCKIINIKPSRVGGLTEALKIHDLCKEHHMQVW 288
Query: 359 IDGMIETRLATGFALHLAA 377
GM+ET ++ + LA+
Sbjct: 289 CGGMLETGISRAQNVALAS 307
|
Converts SHCHC to OSB. Bacillus subtilis (strain 168) (taxid: 224308) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 427 | ||||||
| 225456012 | 420 | PREDICTED: l-Ala-D/L-Glu epimerase [Viti | 0.871 | 0.885 | 0.675 | 1e-145 | |
| 297734245 | 401 | unnamed protein product [Vitis vinifera] | 0.871 | 0.927 | 0.675 | 1e-144 | |
| 255574332 | 453 | muconate cycloisomerase, putative [Ricin | 1.0 | 0.942 | 0.579 | 1e-140 | |
| 356512290 | 387 | PREDICTED: l-Ala-D/L-Glu epimerase-like | 0.880 | 0.971 | 0.660 | 1e-139 | |
| 356525058 | 442 | PREDICTED: l-Ala-D/L-Glu epimerase-like | 0.899 | 0.868 | 0.651 | 1e-138 | |
| 449439093 | 432 | PREDICTED: l-Ala-D/L-Glu epimerase-like | 0.913 | 0.902 | 0.611 | 1e-137 | |
| 224118774 | 387 | predicted protein [Populus trichocarpa] | 0.871 | 0.961 | 0.630 | 1e-137 | |
| 449490070 | 438 | PREDICTED: l-Ala-D/L-Glu epimerase-like | 0.882 | 0.860 | 0.622 | 1e-132 | |
| 449441724 | 439 | PREDICTED: l-Ala-D/L-Glu epimerase-like | 0.882 | 0.858 | 0.622 | 1e-132 | |
| 357133316 | 442 | PREDICTED: l-Ala-D/L-Glu epimerase-like | 0.864 | 0.834 | 0.618 | 1e-130 |
| >gi|225456012|ref|XP_002277056.1| PREDICTED: l-Ala-D/L-Glu epimerase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust.
Identities = 252/373 (67%), Positives = 293/373 (78%), Gaps = 1/373 (0%)
Query: 52 TSLGFKNLTETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGE 111
T+ GFKNL ETF VDVQRAEGR LNV L AP ++ S +E VENVAIR+EL NGCVGWGE
Sbjct: 44 TTFGFKNLIETFTVDVQRAEGRPLNVPLIAPFTIASSRLERVENVAIRIELKNGCVGWGE 103
Query: 112 VAVVPLVTGD-QTKALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMA 170
++P VT + Q A+ K E C+ LR+ P TL L EI LPG EFASVRAGVEMA
Sbjct: 104 GPILPFVTAENQATAMAKAAEVCEVLRRRPAMTLGMLLGEIGEALPGHEFASVRAGVEMA 163
Query: 171 LIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRN 230
LIDAVANS+ IPLWRLFGG SN+++T ITIP VSPA+A+ELA+KY K GF TLKL VG+N
Sbjct: 164 LIDAVANSMGIPLWRLFGGVSNAITTDITIPIVSPADAAELATKYRKQGFKTLKLKVGKN 223
Query: 231 ITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWS 290
+ AD +VLQAI HP C FILDANEGYT +EA+EVL KL++MGV PVLFEQPVHRDDW
Sbjct: 224 LNADIEVLQAIRVAHPDCLFILDANEGYTPKEAIEVLEKLHEMGVTPVLFEQPVHRDDWE 283
Query: 291 GLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKAT 350
GL VS ARD YG+SV ADESCRSL DV+K+++ NLA+V+NIKLAK GVLG L+II A
Sbjct: 284 GLGHVSKVARDKYGVSVAADESCRSLVDVKKIVEGNLANVINIKLAKVGVLGALEIIDAA 343
Query: 351 RKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYN 410
R +GL LMI GM+ETRLA GFA HLAAGLGC K+++L+TP LLSEDP G +VSGA+Y
Sbjct: 344 RAAGLDLMIGGMVETRLAMGFAGHLAAGLGCFKFIDLDTPLLLSEDPVQEGYDVSGAVYK 403
Query: 411 FTNARGQGGFLKW 423
FTNARG GGFL W
Sbjct: 404 FTNARGHGGFLHW 416
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297734245|emb|CBI15492.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust.
Identities = 252/373 (67%), Positives = 293/373 (78%), Gaps = 1/373 (0%)
Query: 52 TSLGFKNLTETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGE 111
T+ GFKNL ETF VDVQRAEGR LNV L AP ++ S +E VENVAIR+EL NGCVGWGE
Sbjct: 7 TTFGFKNLIETFTVDVQRAEGRPLNVPLIAPFTIASSRLERVENVAIRIELKNGCVGWGE 66
Query: 112 VAVVPLVTGD-QTKALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMA 170
++P VT + Q A+ K E C+ LR+ P TL L EI LPG EFASVRAGVEMA
Sbjct: 67 GPILPFVTAENQATAMAKAAEVCEVLRRRPAMTLGMLLGEIGEALPGHEFASVRAGVEMA 126
Query: 171 LIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRN 230
LIDAVANS+ IPLWRLFGG SN+++T ITIP VSPA+A+ELA+KY K GF TLKL VG+N
Sbjct: 127 LIDAVANSMGIPLWRLFGGVSNAITTDITIPIVSPADAAELATKYRKQGFKTLKLKVGKN 186
Query: 231 ITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWS 290
+ AD +VLQAI HP C FILDANEGYT +EA+EVL KL++MGV PVLFEQPVHRDDW
Sbjct: 187 LNADIEVLQAIRVAHPDCLFILDANEGYTPKEAIEVLEKLHEMGVTPVLFEQPVHRDDWE 246
Query: 291 GLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKAT 350
GL VS ARD YG+SV ADESCRSL DV+K+++ NLA+V+NIKLAK GVLG L+II A
Sbjct: 247 GLGHVSKVARDKYGVSVAADESCRSLVDVKKIVEGNLANVINIKLAKVGVLGALEIIDAA 306
Query: 351 RKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYN 410
R +GL LMI GM+ETRLA GFA HLAAGLGC K+++L+TP LLSEDP G +VSGA+Y
Sbjct: 307 RAAGLDLMIGGMVETRLAMGFAGHLAAGLGCFKFIDLDTPLLLSEDPVQEGYDVSGAVYK 366
Query: 411 FTNARGQGGFLKW 423
FTNARG GGFL W
Sbjct: 367 FTNARGHGGFLHW 379
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255574332|ref|XP_002528080.1| muconate cycloisomerase, putative [Ricinus communis] gi|223532541|gb|EEF34330.1| muconate cycloisomerase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 262/452 (57%), Positives = 318/452 (70%), Gaps = 25/452 (5%)
Query: 1 MVPVGSALFSPTCNFFFSPCV-----------SRSLHRSQNVIKFCVSNVMAETTTVRTS 49
M P+G AL T FF S V ++ + ++ + + S +MA++T TS
Sbjct: 1 MAPIGFALCPKTSIFFPSSNVEERVSGNYLYANKHISKTGVIASYGGSKLMAQSTVTTTS 60
Query: 50 ERT-----------SLGFKNLTETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAI 98
+ + GFKNL ETFWVDVQRAEGR LN+ L APLS+G SVE VENVAI
Sbjct: 61 STSVSTSSRSSERTNFGFKNLAETFWVDVQRAEGRPLNLELIAPLSVGSKSVEEVENVAI 120
Query: 99 RVELSNGCVGWGEVAVVPLVTG-DQTKALVKVREACQFLRQSPPTTLNFALDEIARILPG 157
RVEL+NGCVGWGEV V P VT + T AL K EAC+FL S P L+ L EI ILPG
Sbjct: 121 RVELTNGCVGWGEVPVFPSVTAVNHTVALAKAMEACEFLSCSSPMVLSLVLSEIGGILPG 180
Query: 158 SEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEA-SELASKYC 216
E ASVRAGVEMALIDAVANSID+PLWRLFGG +N+L+T +T+P V PAEA S+ ASKYC
Sbjct: 181 PELASVRAGVEMALIDAVANSIDVPLWRLFGGVANTLTTGVTLPTVFPAEAYSQGASKYC 240
Query: 217 KLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVI 276
+ GF T KL +G+N +A+ LQAI A HP CS ILDANE YT +EA+E+L KL D G+
Sbjct: 241 QSGFRTFKLKIGKNTSAEIKALQAIQAAHPLCSLILDANEAYTCQEAIEILQKLYDSGIT 300
Query: 277 PVLFEQPVHRDDWSGLHDVSNFARDT-YGISVVADESCRSLNDVQKVMQENLASVVNIKL 335
P + EQPVHR DW GL +VSNFAR+ YGISV DE+C+SL +V++V++ENLA +NIKL
Sbjct: 301 PAVLEQPVHRSDWKGLGEVSNFAREKKYGISVAVDETCQSLIEVRRVIKENLADAINIKL 360
Query: 336 AKFGVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSE 395
AKFGV+G L+II+ R+SG+ LMI G +E+RLATGFA HLAAGLGC K V L+ PFLLSE
Sbjct: 361 AKFGVMGALEIIELARESGVKLMISGTVESRLATGFAAHLAAGLGCFKSVVLDMPFLLSE 420
Query: 396 DPFVGGCEVSGAIYNFTNARGQGGFLKWTIVS 427
DP + G E SG +Y F N RGQGGFLKW S
Sbjct: 421 DPVICGYEASGPVYKFLNVRGQGGFLKWDFSS 452
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356512290|ref|XP_003524853.1| PREDICTED: l-Ala-D/L-Glu epimerase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust.
Identities = 249/377 (66%), Positives = 293/377 (77%), Gaps = 1/377 (0%)
Query: 48 TSERTSLGFKNLTETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCV 107
T+ + GFKNL ETF VDV RAE R LNV L AP ++ S ++ VENVAIRVELSNG V
Sbjct: 7 TAAAITFGFKNLLETFTVDVHRAENRPLNVPLIAPFTIATSRLDKVENVAIRVELSNGAV 66
Query: 108 GWGEVAVVPLVTG-DQTKALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAG 166
GWGE ++P VT DQT A+VK EAC FLR+ P TL L EIA ILPG +FAS RAG
Sbjct: 67 GWGEAPILPFVTAEDQTTAMVKASEACAFLRKCPALTLGSMLGEIAGILPGHQFASARAG 126
Query: 167 VEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLN 226
+EMA+IDAVANSI +PLWRLFGGASN+++T ITIP VSPAEA+ELASKY K GF TLKL
Sbjct: 127 IEMAIIDAVANSIRVPLWRLFGGASNTITTDITIPIVSPAEAAELASKYYKEGFKTLKLK 186
Query: 227 VGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHR 286
VG+N+ AD +VLQAI HP C FILDANEGY SEEAV+VL KL+DMG+ PVLFEQPVHR
Sbjct: 187 VGKNLNADIEVLQAIRVAHPKCQFILDANEGYNSEEAVDVLEKLHDMGLTPVLFEQPVHR 246
Query: 287 DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQI 346
DDW GL V N AR+ YG+SV ADESCRS+ DV K+++ N+ V+NIKLAK GV+G L+I
Sbjct: 247 DDWDGLRYVGNIARERYGVSVAADESCRSIIDVYKIVEGNVLDVINIKLAKVGVMGALEI 306
Query: 347 IKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSG 406
I+ + +GL LMI GM+ETRLA GFA LAAGLGC K+++L+TP LLS+DP + G EVSG
Sbjct: 307 IEKAKAAGLDLMIGGMVETRLAMGFAGQLAAGLGCFKFIDLDTPLLLSDDPVLEGYEVSG 366
Query: 407 AIYNFTNARGQGGFLKW 423
A Y FTNARG GGFL W
Sbjct: 367 ATYKFTNARGHGGFLHW 383
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525058|ref|XP_003531144.1| PREDICTED: l-Ala-D/L-Glu epimerase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 252/387 (65%), Positives = 295/387 (76%), Gaps = 3/387 (0%)
Query: 38 NVMAETTTVRTSERTSLGFKNLTETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVA 97
+MA T T+ + GFKNL ETF VDV RAE R LNV L AP ++ S + VENVA
Sbjct: 54 KIMASATP--TAAPITFGFKNLLETFTVDVHRAENRPLNVPLIAPFTIATSRLAKVENVA 111
Query: 98 IRVELSNGCVGWGEVAVVPLVTG-DQTKALVKVREACQFLRQSPPTTLNFALDEIARILP 156
IRVELSNG VGWGE ++P VT DQT A+ K EAC FLR+ P TL L EIA ILP
Sbjct: 112 IRVELSNGSVGWGEAPILPFVTAEDQTTAMAKASEACAFLRRCPALTLGSMLGEIAGILP 171
Query: 157 GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYC 216
G +FASVRAG+EMA+IDAVANSI +PLWRLFGGASN+++T ITIP VSPAEA+ELASKY
Sbjct: 172 GHQFASVRAGMEMAIIDAVANSIRVPLWRLFGGASNTITTDITIPIVSPAEAAELASKYY 231
Query: 217 KLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVI 276
K GF TLKL VG+N+ AD +VLQAI HP C FILDANEGY SEEAVEVL KL+DM +
Sbjct: 232 KEGFKTLKLKVGKNLNADIEVLQAIRVAHPECQFILDANEGYNSEEAVEVLEKLHDMRLT 291
Query: 277 PVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLA 336
PVLFEQPVHRDDW GL V N AR+ YG+SV ADESCRS+ DV K+++ N+ V+NIKLA
Sbjct: 292 PVLFEQPVHRDDWDGLRYVGNIARERYGVSVAADESCRSIVDVYKIVEGNVLDVINIKLA 351
Query: 337 KFGVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSED 396
K GV+G L+II+ + +GL LMI GM+ETRLA GFA LAAGLGC K+++L+TP LLS+D
Sbjct: 352 KVGVMGALEIIEKAKAAGLDLMIGGMVETRLAMGFAGQLAAGLGCFKFIDLDTPLLLSDD 411
Query: 397 PFVGGCEVSGAIYNFTNARGQGGFLKW 423
P + G EVSGA Y FTNARG GGFL W
Sbjct: 412 PVLEGYEVSGATYKFTNARGHGGFLHW 438
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449439093|ref|XP_004137322.1| PREDICTED: l-Ala-D/L-Glu epimerase-like [Cucumis sativus] gi|449497562|ref|XP_004160436.1| PREDICTED: LOW QUALITY PROTEIN: l-Ala-D/L-Glu epimerase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 241/394 (61%), Positives = 306/394 (77%), Gaps = 4/394 (1%)
Query: 31 VIKFCVSNVMAETTTVRTSERTSLGFKNLTETFWVDVQRAEGRELNVALSAPLSLGLSSV 90
+++ CV +MA + R SLGFKNL ETF V+VQRAE R LNV L P ++ S +
Sbjct: 37 ILRLCV-KIMAAAAPADS--RNSLGFKNLMETFTVNVQRAENRTLNVPLIEPFTIASSRL 93
Query: 91 ENVENVAIRVELSNGCVGWGEVAVVPLVTG-DQTKALVKVREACQFLRQSPPTTLNFALD 149
E VENVAIR+ELSNGCVGWGE ++P VT DQ+ A+ K E C+ LRQ PP+TL A+
Sbjct: 94 EMVENVAIRIELSNGCVGWGEAPILPFVTAEDQSTAMAKAEEVCELLRQRPPSTLGSAMM 153
Query: 150 EIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEAS 209
+I+ LPG EFASVRAGVEMALIDAVANSI+IPLW+LFGG S+S++T ITIP S + A+
Sbjct: 154 QISETLPGHEFASVRAGVEMALIDAVANSINIPLWKLFGGVSDSITTDITIPITSASNAA 213
Query: 210 ELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGK 269
+LA+KY GF TLKL VG+++ +D +VL++I VHP C FILDANEGY +EEA++VL K
Sbjct: 214 KLAAKYRDQGFKTLKLKVGKDLKSDIEVLKSIRMVHPDCEFILDANEGYDTEEAIQVLEK 273
Query: 270 LNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLAS 329
L+++GV P LFEQPVHRD+W GL +VS ARD YG+SV ADESCRS++DV+++++ +LA
Sbjct: 274 LHELGVTPTLFEQPVHRDNWEGLGNVSRVARDKYGVSVAADESCRSVDDVKRIVEGDLAD 333
Query: 330 VVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNT 389
V+NIKLAK GVLG ++II+ R SGL LMI GM+ETRLA GF+ HLAAGLGC KY++L+T
Sbjct: 334 VINIKLAKVGVLGAIEIIEVARGSGLSLMIGGMVETRLAMGFSGHLAAGLGCFKYIDLDT 393
Query: 390 PFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKW 423
P LLSEDP GG EVSGA+Y FTN++G GG+L W
Sbjct: 394 PLLLSEDPVHGGYEVSGAVYKFTNSQGHGGYLHW 427
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224118774|ref|XP_002317902.1| predicted protein [Populus trichocarpa] gi|222858575|gb|EEE96122.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust.
Identities = 235/373 (63%), Positives = 291/373 (78%), Gaps = 1/373 (0%)
Query: 52 TSLGFKNLTETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGE 111
++ F++L ETF VDV+RAE R LNV L AP ++ S ++ VENVAIR+ELS+GCVGWGE
Sbjct: 10 STFEFRDLMETFAVDVKRAENRPLNVPLIAPFTIASSRLDKVENVAIRIELSDGCVGWGE 69
Query: 112 VAVVPLVTG-DQTKALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMA 170
++P VT DQ+ A++K REAC+ L+ S L L+ ++ ILPG EFASVRAGVEMA
Sbjct: 70 APILPFVTAEDQSTAMIKAREACELLKNSSSMKLGLVLERVSEILPGHEFASVRAGVEMA 129
Query: 171 LIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRN 230
LIDAVA SI++PLW LFGGAS+S++T ITIP VS AEA+ELASKY K GF TLKL VG+N
Sbjct: 130 LIDAVAKSINVPLWILFGGASDSITTDITIPIVSSAEAAELASKYRKQGFQTLKLKVGKN 189
Query: 231 ITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWS 290
+ D +VLQAI AVHP C FILDANEGY EEA+EVL +L+ MGV P+LFEQPVHRDDW
Sbjct: 190 LKEDIEVLQAIRAVHPDCLFILDANEGYKPEEAIEVLEELHKMGVTPILFEQPVHRDDWE 249
Query: 291 GLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKAT 350
GL V++ A+ YG+SV ADESCRSL D +++++ NLA V+NIKLAK GV+G L+II+
Sbjct: 250 GLGHVTHIAKGKYGVSVAADESCRSLVDAKRIIKGNLADVINIKLAKVGVVGGLEIIEEA 309
Query: 351 RKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYN 410
R SGL LMI GM+ETRLA GFA HLAAG GC K+++L+TP LLSEDP + G EVSGA+Y
Sbjct: 310 RTSGLDLMIGGMVETRLAMGFAGHLAAGFGCFKFIDLDTPLLLSEDPVLEGYEVSGAVYK 369
Query: 411 FTNARGQGGFLKW 423
FT+A+G GFL W
Sbjct: 370 FTDAQGHAGFLDW 382
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449490070|ref|XP_004158499.1| PREDICTED: l-Ala-D/L-Glu epimerase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 237/381 (62%), Positives = 291/381 (76%), Gaps = 4/381 (1%)
Query: 48 TSERTSLGFKNLTETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCV 107
+S+R S GF+N+ +TFWV+VQRAEGR L++ L++PL G S +E + NVAIRVELSNGCV
Sbjct: 53 SSQRLSFGFQNVADTFWVNVQRAEGRPLSIGLNSPLHFGNSKLETLNNVAIRVELSNGCV 112
Query: 108 GWGEVAVVPLVTGDQT--KALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRA 165
GWGEV V+P VT D T AL K +E C FL ++PP TL D++ +L EFA +RA
Sbjct: 113 GWGEVQVLPSVT-DVTLEMALAKAQEVCNFLLRTPPATLTSVFDDVTALLSPREFAPIRA 171
Query: 166 GVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKL 225
GVEMALIDAVANSI +PLWRLFGG +++L+T IT+P +SP EAS LASKY GF TLKL
Sbjct: 172 GVEMALIDAVANSISVPLWRLFGGVTSTLTTVITVPILSPEEASILASKYYNQGFETLKL 231
Query: 226 NVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVH 285
VG+N A+ ++AIHA P CSF+ DANEGYT +EA++ L KL D+G++P++FEQPV
Sbjct: 232 VVGKNFAAEIAAIEAIHAAQPCCSFMFDANEGYTPDEAIKFLEKLKDVGIVPLVFEQPVD 291
Query: 286 RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQ 345
RDDW GLH+VSN AR TYGI V DESCRSL DV K++ +NL +NIKL KFGVLG L+
Sbjct: 292 RDDWKGLHEVSNVAR-TYGIPVAVDESCRSLTDVWKIIDKNLVDAINIKLPKFGVLGALE 350
Query: 346 IIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVS 405
II RKSGL LM+D M ETRLATGFA HLAAG+GC KY+ L+TP LL+EDP VGG E S
Sbjct: 351 IINLARKSGLILMVDSMAETRLATGFAGHLAAGVGCFKYIVLDTPLLLAEDPVVGGYEAS 410
Query: 406 GAIYNFTNARGQGGFLKWTIV 426
GA+Y F NARGQGGFL W ++
Sbjct: 411 GAVYKFNNARGQGGFLNWNLL 431
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441724|ref|XP_004138632.1| PREDICTED: l-Ala-D/L-Glu epimerase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 237/381 (62%), Positives = 291/381 (76%), Gaps = 4/381 (1%)
Query: 48 TSERTSLGFKNLTETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCV 107
+S+R S GF+N+ +TFWV+VQRAEGR L++ L++PL G S +E + NVAIRVELSNGCV
Sbjct: 54 SSQRLSFGFQNVADTFWVNVQRAEGRPLSIGLNSPLHFGNSKLETLNNVAIRVELSNGCV 113
Query: 108 GWGEVAVVPLVTGDQT--KALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRA 165
GWGEV V+P VT D T AL K +E C FL ++PP TL D++ +L EFA +RA
Sbjct: 114 GWGEVQVLPSVT-DVTLEMALAKAQEVCNFLLRTPPATLTSVFDDVTALLSPREFAPIRA 172
Query: 166 GVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKL 225
GVEMALIDAVANSI +PLWRLFGG +++L+T IT+P +SP EAS LASKY GF TLKL
Sbjct: 173 GVEMALIDAVANSISVPLWRLFGGVTSTLTTVITVPILSPEEASILASKYYNQGFETLKL 232
Query: 226 NVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVH 285
VG+N A+ ++AIHA P CSF+ DANEGYT +EA++ L KL D+G++P++FEQPV
Sbjct: 233 VVGKNFAAEIAAIEAIHAAQPCCSFMFDANEGYTPDEAIKFLEKLKDVGIVPLVFEQPVD 292
Query: 286 RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQ 345
RDDW GLH+VSN AR TYGI V DESCRSL DV K++ +NL +NIKL KFGVLG L+
Sbjct: 293 RDDWKGLHEVSNVAR-TYGIPVAVDESCRSLTDVWKIIDKNLVDAINIKLPKFGVLGALE 351
Query: 346 IIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVS 405
II RKSGL LM+D M ETRLATGFA HLAAG+GC KY+ L+TP LL+EDP VGG E S
Sbjct: 352 IINLARKSGLILMVDSMAETRLATGFAGHLAAGVGCFKYIVLDTPLLLAEDPVVGGYEAS 411
Query: 406 GAIYNFTNARGQGGFLKWTIV 426
GA+Y F NARGQGGFL W ++
Sbjct: 412 GAVYKFNNARGQGGFLNWNLL 432
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357133316|ref|XP_003568272.1| PREDICTED: l-Ala-D/L-Glu epimerase-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/370 (61%), Positives = 280/370 (75%), Gaps = 1/370 (0%)
Query: 53 SLGFKNLTETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEV 112
+ GF+ L ETF VDV AE R L+V L+AP ++ S +E+V NVA+RVELS+G VGWGE
Sbjct: 64 TFGFEALKETFSVDVSAAEARPLDVPLAAPFTIASSRLESVSNVAVRVELSSGAVGWGEA 123
Query: 113 AVVPLVTG-DQTKALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMAL 171
V+P VT DQ AL V AC L +P L L+++A LPG FAS RAGVEMA+
Sbjct: 124 PVLPSVTAEDQPAALAAVGRACAKLAGAPSAPLGAVLEDVAAALPGHAFASARAGVEMAV 183
Query: 172 IDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNI 231
IDAVANSI +PLWRLFGGASNS++T ITIP V+P EA++LA+KY GF TLKL VG+N+
Sbjct: 184 IDAVANSIRVPLWRLFGGASNSVTTDITIPIVTPNEAAQLAAKYRGQGFQTLKLKVGKNL 243
Query: 232 TADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSG 291
+D +VL+AI VHP CSFILDANEGYT+ +A+EVL +LN+MGV PVLFEQPVHRDDW G
Sbjct: 244 NSDIEVLKAIRLVHPDCSFILDANEGYTANQAIEVLDRLNEMGVTPVLFEQPVHRDDWEG 303
Query: 292 LHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATR 351
L DVS A + Y ++V ADESCR L D QK++ NL+ V+NIKLAK GVLG L++I A R
Sbjct: 304 LRDVSTAAMEKYRVAVAADESCRGLLDAQKIINGNLSHVINIKLAKLGVLGALEVIDAAR 363
Query: 352 KSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNF 411
K+G+ LMI GM+ETR+A GFA HLAAGLGC +++L+TP LLSEDP GG E SG +Y F
Sbjct: 364 KAGIALMIGGMVETRIAMGFAGHLAAGLGCFSFIDLDTPLLLSEDPVYGGYEASGPLYKF 423
Query: 412 TNARGQGGFL 421
TNARG GGFL
Sbjct: 424 TNARGHGGFL 433
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 427 | ||||||
| UNIPROTKB|Q81PF7 | 350 | BAS2659 "Mandelate racemase/mu | 0.723 | 0.882 | 0.304 | 5.2e-33 | |
| TIGR_CMR|BA_2850 | 350 | BA_2850 "mandelate racemase/mu | 0.723 | 0.882 | 0.304 | 5.2e-33 | |
| TIGR_CMR|BA_0339 | 369 | BA_0339 "mandelate racemase/mu | 0.688 | 0.796 | 0.213 | 2.1e-17 | |
| UNIPROTKB|Q4K9X1 | 382 | catB "Muconate cycloisomerase" | 0.697 | 0.780 | 0.261 | 9.2e-14 | |
| UNIPROTKB|Q71WQ8 | 374 | LMOf2365_2493 "N-acylamino aci | 0.622 | 0.711 | 0.255 | 1.5e-13 | |
| UNIPROTKB|P27099 | 370 | tcbD "Chloromuconate cycloisom | 0.681 | 0.786 | 0.248 | 7e-13 | |
| TIGR_CMR|SPO_1594 | 368 | SPO_1594 "mandelate racemase/m | 0.634 | 0.736 | 0.262 | 4.4e-12 | |
| UNIPROTKB|P51981 | 321 | ycjG "L-Ala-D/L-Glu epimerase" | 0.639 | 0.850 | 0.27 | 1.3e-11 | |
| TIGR_CMR|SPO_1595 | 367 | SPO_1595 "mandelate racemase/m | 0.646 | 0.752 | 0.238 | 3.6e-11 | |
| UNIPROTKB|Q81K98 | 368 | BAS4746 "N-acylamino acid race | 0.637 | 0.739 | 0.244 | 3.9e-10 |
| UNIPROTKB|Q81PF7 BAS2659 "Mandelate racemase/muconate lactonizing enzyme family protein" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 100/328 (30%), Positives = 163/328 (49%)
Query: 90 VENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQF-LRQS--PPTTLNF 146
V +E++ + + G VG G A P++TGD + EA +R S + F
Sbjct: 26 VTEIESIDVYIHTDEGIVGKGAGAATPVITGDFANG---IEEAILGPMRSSLIGQDIIQF 82
Query: 147 A--LDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVS 204
L I G+ S +A V++AL D +IPL+ L GG + T IT+
Sbjct: 83 QQLLQHIQMSCIGNP--SAKAAVDIALYDVYCQYHNIPLYALLGG-KKEIHTDITLSVDE 139
Query: 205 PAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAI-HAVHPHCSFILDANEGYTSEEA 263
P ++ A ++ + GF TLK+ VG++ D + ++AI ++V + + LDAN+G+ +EA
Sbjct: 140 PFIMAKEAKQHVEKGFQTLKIKVGKSAHLDLERIEAIRNSVPKNTTLRLDANQGWNPKEA 199
Query: 264 VEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVM 323
V ++ ++ + + EQPVH DW GL + +D ++ADES S +D K++
Sbjct: 200 VSIIKEMENRNLNIEFIEQPVHAKDWDGL----KYVKDHVQTPIMADESIFSASDALKIV 255
Query: 324 QENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCI 382
Q ++NIKL K G+ +I +G+ M+ M+E+ L+ HLAA I
Sbjct: 256 QGRYVDLINIKLMKCSGIREAWRIADIAEAAGVKCMVGSMMESSLSVSAVAHLAAAHPNI 315
Query: 383 KYVNLNTPFLLSEDPFVGGCEVSGAIYN 410
Y +L+ P L E+P G SG+ N
Sbjct: 316 HYFDLDAPLWLMEEP--EGMTYSGSKVN 341
|
|
| TIGR_CMR|BA_2850 BA_2850 "mandelate racemase/muconate lactonizing enzyme family protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 100/328 (30%), Positives = 163/328 (49%)
Query: 90 VENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQF-LRQS--PPTTLNF 146
V +E++ + + G VG G A P++TGD + EA +R S + F
Sbjct: 26 VTEIESIDVYIHTDEGIVGKGAGAATPVITGDFANG---IEEAILGPMRSSLIGQDIIQF 82
Query: 147 A--LDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVS 204
L I G+ S +A V++AL D +IPL+ L GG + T IT+
Sbjct: 83 QQLLQHIQMSCIGNP--SAKAAVDIALYDVYCQYHNIPLYALLGG-KKEIHTDITLSVDE 139
Query: 205 PAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAI-HAVHPHCSFILDANEGYTSEEA 263
P ++ A ++ + GF TLK+ VG++ D + ++AI ++V + + LDAN+G+ +EA
Sbjct: 140 PFIMAKEAKQHVEKGFQTLKIKVGKSAHLDLERIEAIRNSVPKNTTLRLDANQGWNPKEA 199
Query: 264 VEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVM 323
V ++ ++ + + EQPVH DW GL + +D ++ADES S +D K++
Sbjct: 200 VSIIKEMENRNLNIEFIEQPVHAKDWDGL----KYVKDHVQTPIMADESIFSASDALKIV 255
Query: 324 QENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCI 382
Q ++NIKL K G+ +I +G+ M+ M+E+ L+ HLAA I
Sbjct: 256 QGRYVDLINIKLMKCSGIREAWRIADIAEAAGVKCMVGSMMESSLSVSAVAHLAAAHPNI 315
Query: 383 KYVNLNTPFLLSEDPFVGGCEVSGAIYN 410
Y +L+ P L E+P G SG+ N
Sbjct: 316 HYFDLDAPLWLMEEP--EGMTYSGSKVN 341
|
|
| TIGR_CMR|BA_0339 BA_0339 "mandelate racemase/muconate lactonizing enzyme family protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 233 (87.1 bits), Expect = 2.1e-17, P = 2.1e-17
Identities = 67/314 (21%), Positives = 153/314 (48%)
Query: 92 NVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKA---LVKVREACQFLRQSPPTTLNFAL 148
++ ++ +++E G +G+GE VTG+ ++ ++K A + Q+P +N +
Sbjct: 28 DMPSIIVKMETDEGIIGYGEGVADDHVTGESWESTFHILKHTLAPALIGQNP---MN--I 82
Query: 149 DEIARILPGSEFA--SVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVS-P 205
++I ++ + + + +A +++A D + ++ P+++L GG + + +++ P
Sbjct: 83 EKIHDMMDNTIYGVPTAKAAIDIACFDIMGKKLNQPVYQLIGGRYHEEFPITHVLSIADP 142
Query: 206 AEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAV 264
E +E A+ + G+ + K+ VG N+ D ++A+ V + +D N+G+ + +
Sbjct: 143 EEMAEEAASMIQKGYQSFKMKVGTNVKEDVKRIEAVRERVGNDIAIRVDVNQGW--KNSA 200
Query: 265 EVLGKLNDMGVIPV-LFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVM 323
L L +G + + EQPV DD + + R + ++ DE + ++++++
Sbjct: 201 NTLMALRSLGHLNIDWIEQPVIADDIDAMAHI----RSKTDLPLMIDEGLKGSREMRQII 256
Query: 324 QENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCI 382
+ A VNIKL K G + +++ +G+ + M+E+ +A+ H+A I
Sbjct: 257 NLDAADKVNIKLMKCGGIYPAVKLAHQAEMAGIECQVGSMVESSVASSAGFHVAFSKKII 316
Query: 383 KYVNLNTPFLLSED 396
V L P ++D
Sbjct: 317 TSVELTGPLKFTKD 330
|
|
| UNIPROTKB|Q4K9X1 catB "Muconate cycloisomerase" [Pseudomonas protegens Pf-5 (taxid:220664)] | Back alignment and assigned GO terms |
|---|
Score = 203 (76.5 bits), Expect = 9.2e-14, P = 9.2e-14
Identities = 83/318 (26%), Positives = 144/318 (45%)
Query: 90 VENVENVAIRVELSNGCVGWGEVAVVP-LVTGDQTKALVKV---REACQFLRQSPPTTLN 145
++N V IR+ ++G G GE + L G+++ +K R L + +N
Sbjct: 29 MQNQTLVLIRLRCADGIEGLGESTTIGGLAYGNESPDSIKTNIDRFVAPLLIGQDASNIN 88
Query: 146 FALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG-ASNSLSTAITIPAVS 204
A+ + + + G+ FA ++G+E AL+DA + +P+ L GG ++L A T+ +
Sbjct: 89 AAMLRLEQSIRGNTFA--KSGIESALLDAQGKRLGLPVSELLGGRVRDALPVAWTLASGD 146
Query: 205 PAEASELASKYCKLGFSTL-KLNVGRNITADFDVLQAI---HAVHPHCSFILDANEGYTS 260
A+ A K L + KL +G D D+ I A+ S +D N+ +
Sbjct: 147 TAKDIAEAQKMLDLRRHRIFKLKIGAG-EVDRDLAHVIAIKKALGDSASVRVDVNQAWDE 205
Query: 261 EEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQ 320
A+ L G+ L EQP+ R++ +G+ + N + ++ADES + D
Sbjct: 206 AVALRACRILGGNGID--LIEQPISRNNRAGMVRL-NASSPA---PIMADESIECVEDAF 259
Query: 321 KVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGL 379
+ +E ASV +K+AK G TL+ +G+ L M+E + T + H L
Sbjct: 260 NLAREGAASVFALKIAKNGGPRATLRTAAIAEAAGIGLYGGTMLEGGIGTLASAHAFLTL 319
Query: 380 GCIKY-VNLNTPFLLSED 396
+ + L P LL+ED
Sbjct: 320 NKLSWDTELFGPLLLTED 337
|
|
| UNIPROTKB|Q71WQ8 LMOf2365_2493 "N-acylamino acid racemase" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] | Back alignment and assigned GO terms |
|---|
Score = 201 (75.8 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 73/286 (25%), Positives = 134/286 (46%)
Query: 100 VELSN--GCVGWGEVAVVPL--VTGDQTKALVKV--REACQFLRQSPPTTLNFALDEIAR 153
+EL N G G+GE+ PL T + + + + L Q T ++++
Sbjct: 34 IELVNEEGIRGYGELEAFPLPDYTEETLGTAISIIKQHLLPILAQKEIRTPE-EVNQMFS 92
Query: 154 ILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEAS-ELA 212
+ G+E A +A VE+A+ DA A + + L ++ G +S++ ++I AEA +L
Sbjct: 93 WIQGNEMA--KAAVELAVWDAFAKNEKLSLAKMIGAKKDSIAVGVSIGVQHSAEALVQLV 150
Query: 213 SKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLND 272
S+Y G+ +KL + D ++A+ P+ S + DAN Y E+ + +L +L+
Sbjct: 151 SQYMDEGYERVKLKIAPK--KDIQFVKAVREKFPNLSLMADANSAYNREDFL-LLKELDH 207
Query: 273 MGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVN 332
+ + EQP D+ H + + + DE+ RSL+D+++ VN
Sbjct: 208 FNL--EMIEQPFGTKDFVE-HA---WLQKKLKTRICLDENIRSLDDLKQAHMLGSCQAVN 261
Query: 333 IKLAKFGVLG-TLQIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377
+KLA+ G + L+I + + L + GM+E + + LAA
Sbjct: 262 LKLARVGGMSEALKIARYCSDNNLLVWCGGMLEAGIGRAHNIALAA 307
|
|
| UNIPROTKB|P27099 tcbD "Chloromuconate cycloisomerase" [Pseudomonas sp. P51 (taxid:65067)] | Back alignment and assigned GO terms |
|---|
Score = 195 (73.7 bits), Expect = 7.0e-13, P = 7.0e-13
Identities = 77/310 (24%), Positives = 149/310 (48%)
Query: 96 VAIRVELSNGCVGWGEVAVVPLVT-GDQTKALVKV---REACQFLRQSPPTTLNFALDEI 151
V ++V+ + G VG GE V T G ++ +KV L + L+ A +
Sbjct: 32 VIVQVK-AGGLVGIGEGGSVGGPTWGSESAETIKVIIDNYLAPLLVGKDASNLSQARVLM 90
Query: 152 ARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASN-SLSTAITIPAVSPAEASE 210
R + G+ S +A +++AL D A ++++ + L GG S+ A T+ + A +
Sbjct: 91 DRAVTGN--LSAKAAIDIALHDLKARALNLSIADLIGGTMRTSIPIAWTLASGDTARDID 148
Query: 211 LASKYCKLG-FSTLKLNVGRNITA-DFDVLQAI-HAVHPHCSFILDANEGYTSEEAVEVL 267
A + + + K+ +G A D + +++I AV S +D N+G+ + A +
Sbjct: 149 SALEMIETRRHNRFKVKLGARTPAQDLEHIRSIVKAVGDRASVRVDVNQGWDEQTASIWI 208
Query: 268 GKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL 327
+L + GV L EQPV R ++ L ++ + G++++ADES SL+ ++ +++
Sbjct: 209 PRLEEAGV--ELVEQPVPRANFGALRRLT----EQNGVAILADESLSSLSSAFELARDHA 262
Query: 328 ASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKY-V 385
++KL G + TL++ +G+ M+++ + T ALH+ A L + Y
Sbjct: 263 VDAFSLKLCNMGGIANTLKVAAVAEAAGISSYGGTMLDSTVGTAAALHVYATLPSLPYGC 322
Query: 386 NLNTPFLLSE 395
L P++L +
Sbjct: 323 ELIGPWVLGD 332
|
|
| TIGR_CMR|SPO_1594 SPO_1594 "mandelate racemase/muconate lactonizing enzyme, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 188 (71.2 bits), Expect = 4.4e-12, P = 4.4e-12
Identities = 78/297 (26%), Positives = 134/297 (45%)
Query: 91 ENVENVAIRVELSNGCVGWGEVA-----VVPLVTGDQTKALVKVREACQFLRQSPPTTLN 145
E ++ +++E G GWGE VP G +A ++ A L P L+
Sbjct: 29 ELLDATLVKLETDAGITGWGEGTPWGHTYVP-AHGPGIRAGIETM-APFVLGLDPRRLLD 86
Query: 146 F--ALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNS-LSTAITIPA 202
A+D IA LPG +A ++ ++MA D + +P+ L GG S + A ++ A
Sbjct: 87 VERAMD-IA--LPGHLYA--KSPIDMACWDIAGQAAGLPIADLMGGGSRTPRPIASSVGA 141
Query: 203 VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFIL-DANEGYTSE 261
S E + +Y + G+ + +G ++ D ++ + + +L D N G+T +
Sbjct: 142 KSVEETRAVIDRYRQRGYVAHSVKIGGDVERDIARIRDVEDIRKPGEIVLYDVNRGWTRQ 201
Query: 262 EAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQK 321
+A+ V+ D+ V +FEQP L D++ R + V DE +L D +
Sbjct: 202 QALRVMRATEDLHV---MFEQPGET-----LDDIAAI-RPLHSAPVSVDECLVTLQDAAR 252
Query: 322 VMQENLASVVNIKLAKFGVLGTLQIIKATRKS-GLHLMIDGMIETRLATGFALHLAA 377
V ++ LA V IKL + G L ++ + G+ + + + LA ALHLAA
Sbjct: 253 VARDGLAEVFGIKLNRVGGLTRAARMRDIALAHGIDMFVMATGGSVLADAEALHLAA 309
|
|
| UNIPROTKB|P51981 ycjG "L-Ala-D/L-Glu epimerase" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 182 (69.1 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 81/300 (27%), Positives = 132/300 (44%)
Query: 100 VELSN-GCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARILPGS 158
VEL G G GE P G+ +++ Q + P +E+ +ILP
Sbjct: 32 VELEEEGIKGTGECTPYPRY-GESDASVM-----AQIMSVVPQLEKGLTREELQKILPAG 85
Query: 159 EFASVRAGVEMALIDAVANSIDIPLWRLFG-GASNSLSTAITIPAVSPAEASELASKYCK 217
+ R ++ AL D A L L G ++ TA T+ +P + + AS +
Sbjct: 86 ---AARNALDCALWDLAARRQQQSLADLIGITLPETVITAQTVVIGTPDQMANSASTLWQ 142
Query: 218 LGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIP 277
G LK+ + ++ ++ V AI P + I+DANE + +E L D+GV
Sbjct: 143 AGAKLLKVKLDNHLISERMV--AIRTAVPDATLIVDANESWRAEGLAARCQLLADLGV-- 198
Query: 278 VLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK 337
+ EQP+ D + L NF + + + ADESC + ++++ + + +VNIKL K
Sbjct: 199 AMLEQPLPAQDDAALE---NFI---HPLPICADESCHTRSNLKAL--KGRYEMVNIKLDK 250
Query: 338 FGVLG-TLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSED 396
G L L + R G LM+ M+ T A AL L + + +L+ P L+ D
Sbjct: 251 TGGLTEALALATEARAQGFSLMLGCMLCTSRAISAALPLVPQ---VSFADLDGPTWLAVD 307
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| TIGR_CMR|SPO_1595 SPO_1595 "mandelate racemase/muconate lactonizing enzyme" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 180 (68.4 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 70/293 (23%), Positives = 126/293 (43%)
Query: 91 ENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVK-VREACQFLRQSPPTTLNFALD 149
+ VE V I V+ G GWGEV +P + + + E + + P + ++
Sbjct: 28 DTVETVVIAVQTDTGITGWGEVCPIPHYLPAYARGVAPALTELAPVILGADPVGVGALME 87
Query: 150 EIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG-ASNSLSTAITIPAVSPAEA 208
+ +L G +A ++ +++AL D +PL L GG + + +I ++P +
Sbjct: 88 RVDAVLHGHPYA--KSALDIALWDITGQVAGLPLHALLGGWRAADMPLYHSITCIAPDDM 145
Query: 209 SELASKYCKLGFSTLKLNVGRNITADFDV--LQAIH-AVHPHCSFILDANEGYTSEEAVE 265
+ +A + G + ++ +G + DV L + AV P D N G TS EA+
Sbjct: 146 ARIAREAQAQGITQFQVKLGASGDWQTDVERLAKVREAVGPGPLVYGDWNCGATSLEAIR 205
Query: 266 VLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQE 325
V G+ + + ++ EQP + L D + R T G+ + DE + +
Sbjct: 206 V-GRA--VAQLDIMLEQPC-----ATLEDCARVQRAT-GLPMKIDELAHDTASLLTAHRL 256
Query: 326 NLASVVNIKLAKFGVLGTLQIIK-ATRKSGLHLMIDGMIETRLATGFALHLAA 377
+ V +KL+KFG L T + + G + I+ + + T LHL A
Sbjct: 257 GIMDAVALKLSKFGGLSTTRRARDLCLHLGARMCIEDTWGSDITTAALLHLGA 309
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| UNIPROTKB|Q81K98 BAS4746 "N-acylamino acid racemase" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 171 (65.3 bits), Expect = 3.9e-10, P = 3.9e-10
Identities = 72/295 (24%), Positives = 129/295 (43%)
Query: 91 ENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTKALVKVREACQFLRQSPPTTLNFAL 148
E E++ I +E +G +G+GEV P T + K + V + FL P L +
Sbjct: 27 EKRESIVIELEDEDGYIGFGEVVAFSEPWYTEETVKTALHVLQ--DFLL---PDLLKAEI 81
Query: 149 ---DEIARILPG-SEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVS 204
+E+ + +AG+E A+ D A L L GG + + + I +
Sbjct: 82 SHPNEVPSLFQHIKRNRMAKAGIEGAVWDLYAKRQKKSLATLLGGTKSEIEVGVVIGINT 141
Query: 205 -PAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEA 263
P ++ KY + G+ K+ + D+++L+ I PH + DAN YT +
Sbjct: 142 IPVMLKQI-EKYAEEGYERFKVKIKPG--HDYELLKEIRKEFPHIPLMADANSAYTLADT 198
Query: 264 VEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVM 323
E L +L++ ++ + EQP+ D+ L D + + + DES SL D + +
Sbjct: 199 -ESLKRLDEFQLM--MIEQPLA--DYDFL-DHAQLQKKIE-TPICLDESIHSLEDARVAI 251
Query: 324 QENLASVVNIKLAKFGVLG-TLQIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377
+VNIK + G L ++QI + + + GM+E ++ + LA+
Sbjct: 252 TLGSCQIVNIKPGRVGGLTESIQIHNYCMEHNIPVWCGGMVEMGISRAQNVALAS 306
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 4.2.1.11 | LOW CONFIDENCE prediction! |
| 3rd Layer | 4.2.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00017730001 | SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (420 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00025552001 | SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (647 aa) | • | 0.481 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 427 | |||
| cd03319 | 316 | cd03319, L-Ala-DL-Glu_epimerase, L-Ala-D/L-Glu epi | 6e-88 | |
| COG4948 | 372 | COG4948, COG4948, L-alanine-DL-glutamate epimerase | 3e-44 | |
| cd03315 | 265 | cd03315, MLE_like, Muconate lactonizing enzyme (ML | 5e-39 | |
| cd03318 | 365 | cd03318, MLE, Muconate Lactonizing Enzyme (MLE), a | 2e-30 | |
| TIGR02534 | 368 | TIGR02534, mucon_cyclo, muconate and chloromuconat | 6e-26 | |
| cd03317 | 354 | cd03317, NAAAR, N-acylamino acid racemase (NAAAR), | 7e-25 | |
| cd00308 | 229 | cd00308, enolase_like, Enolase-superfamily, charac | 1e-22 | |
| cd03320 | 263 | cd03320, OSBS, o-Succinylbenzoate synthase (OSBS) | 3e-22 | |
| cd03316 | 357 | cd03316, MR_like, Mandelate racemase (MR)-like sub | 1e-20 | |
| TIGR01928 | 324 | TIGR01928, menC_lowGC/arch, o-succinylbenzoate syn | 1e-17 | |
| smart00922 | 97 | smart00922, MR_MLE, Mandelate racemase / muconate | 1e-15 | |
| TIGR01927 | 307 | TIGR01927, menC_gamma/gm+, o-succinylbenzoate synt | 2e-14 | |
| PLN02980 | 1655 | PLN02980, PLN02980, 2-oxoglutarate decarboxylase/ | 2e-13 | |
| PRK15129 | 321 | PRK15129, PRK15129, L-Ala-D/L-Glu epimerase; Provi | 4e-12 | |
| cd03321 | 355 | cd03321, mandelate_racemase, Mandelate racemase (M | 6e-12 | |
| PRK02714 | 320 | PRK02714, PRK02714, O-succinylbenzoate synthase; P | 1e-11 | |
| pfam13378 | 111 | pfam13378, MR_MLE_C, Enolase C-terminal domain-lik | 2e-10 | |
| pfam01188 | 69 | pfam01188, MR_MLE, Mandelate racemase / muconate l | 3e-09 | |
| PRK02901 | 327 | PRK02901, PRK02901, O-succinylbenzoate synthase; P | 3e-07 | |
| cd03328 | 352 | cd03328, MR_like_3, Mandelate racemase (MR)-like s | 6e-07 | |
| cd03325 | 352 | cd03325, D-galactonate_dehydratase, D-galactonate | 6e-06 | |
| pfam02746 | 117 | pfam02746, MR_MLE_N, Mandelate racemase / muconate | 6e-06 | |
| cd03324 | 415 | cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS | 2e-05 | |
| PRK05105 | 322 | PRK05105, PRK05105, O-succinylbenzoate synthase; P | 0.004 |
| >gnl|CDD|239435 cd03319, L-Ala-DL-Glu_epimerase, L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides | Back alignment and domain information |
|---|
Score = 269 bits (691), Expect = 6e-88
Identities = 111/324 (34%), Positives = 166/324 (51%), Gaps = 15/324 (4%)
Query: 73 RELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGD-QTKALVKVRE 131
R + L P ++ S ENV + +EL G G+GE A P VTG+ L ++
Sbjct: 5 RPERLPLKRPFTIARGSRTEAENVIVEIELD-GITGYGEAAPTPRVTGETVESVLAALKS 63
Query: 132 ACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGAS 191
L P L L+ + +LPG + RA V++AL D A + +PL++L+GG +
Sbjct: 64 VRPALIGGDPR-LEKLLEALQELLPG--NGAARAAVDIALWDLEAKLLGLPLYQLWGGGA 120
Query: 192 -NSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSF 250
L T TI +P + A K K GF LK+ +G ++ D + ++AI P
Sbjct: 121 PRPLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIKLGGDLEDDIERIRAIREAAPDARL 180
Query: 251 ILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVAD 310
+DAN+G+T EEAVE+L +L ++GV L EQPV D GL + RD + ++AD
Sbjct: 181 RVDANQGWTPEEAVELLRELAELGV--ELIEQPVPAGDDDGLAYL----RDKSPLPIMAD 234
Query: 311 ESCRSLNDVQKVMQENLASVVNIKLAK-FGVLGTLQIIKATRKSGLHLMIDGMIETRLAT 369
ESC S D ++ +NIKL K G+ L+I R +GL +M+ M+E+ L+
Sbjct: 235 ESCFSAADAARLAGGGAYDGINIKLMKTGGLTEALRIADLARAAGLKVMVGCMVESSLSI 294
Query: 370 GFALHLAAGLGCIKYVNLNTPFLL 393
A HLAA +V+L+ P LL
Sbjct: 295 AAAAHLAA--AKADFVDLDGPLLL 316
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The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Length = 316 |
| >gnl|CDD|227284 COG4948, COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only] | Back alignment and domain information |
|---|
Score = 157 bits (400), Expect = 3e-44
Identities = 85/357 (23%), Positives = 142/357 (39%), Gaps = 21/357 (5%)
Query: 73 RELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREA 132
+ V LS P +V V + + +G VGWGE + V +
Sbjct: 9 IPVAVPLSPPFVTSGGTVRFFTRVIVEITTDDGIVGWGEAVPGGRARYGEEAEAVLLAPL 68
Query: 133 CQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASN 192
+ L G + + V++AL D ++ +P+++L GG
Sbjct: 69 LIGRDPFDIERIWQKLYRAGFARRGGITMAAISAVDIALWDLAGKALGVPVYKLLGGKVR 128
Query: 193 SLSTAITI---PAVSPAEASELASKYCKLGFSTLKLNVGRN-ITADFDVLQAI-HAVHPH 247
A A+E A +LGF LKL VG D + ++A+ AV
Sbjct: 129 DEVRAYASGGGGEDPEEMAAEAARALVELGFKALKLKVGVGDGDEDLERVRALREAVGDD 188
Query: 248 CSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISV 307
++DAN G+T EEA+ + L + G E+P+ DD GL ++ R +
Sbjct: 189 VRLMVDANGGWTLEEAIRLARALEEYG--LEWIEEPLPPDDLEGLREL----RAATSTPI 242
Query: 308 VADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGMIETR 366
A ES + D +++++ +V LA+ G+ L+I A G +M+ +E
Sbjct: 243 AAGESVYTRWDFRRLLEAGAVDIVQPDLARVGGITEALKI--AALAEGFGVMVGPHVEGP 300
Query: 367 LATGFALHLAAGLGCIKYVNLNTPFLLSEDP-----FVGGCEVSGAIYNFTNARGQG 418
++ ALHLAA L + +L P L++D V G + + + G G
Sbjct: 301 ISLAAALHLAAALP--NFGDLEGPLALADDDWYDDLVEEPLIVRGGLVHVPDGPGLG 355
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Length = 372 |
| >gnl|CDD|239431 cd03315, MLE_like, Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 5e-39
Identities = 84/301 (27%), Positives = 127/301 (42%), Gaps = 58/301 (19%)
Query: 79 LSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQ 138
L PL ++ ++V +R+ +G VGW E
Sbjct: 10 LKRPLKWASGTLTTADHVLLRLHTDDGLVGWAEAT------------------------- 44
Query: 139 SPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAI 198
+A V+MAL D + +P++ L GG + + A
Sbjct: 45 -------------------------KAAVDMALWDLWGKRLGVPVYLLLGGYRDRVRVAH 79
Query: 199 TIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAI-HAVHPHCSFILDANEG 257
+ PAE +E A + + GF T KL VGR+ D V+ A+ AV +DAN G
Sbjct: 80 MLGLGEPAEVAEEARRALEAGFRTFKLKVGRDPARDVAVVAALREAVGDDAELRVDANRG 139
Query: 258 YTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLN 317
+T ++A+ L L D+G+ EQP+ DD L + AR T ++ADES + +
Sbjct: 140 WTPKQAIRALRALEDLGLD--YVEQPLPADD---LEGRAALARAT-DTPIMADESAFTPH 193
Query: 318 DVQKVMQENLASVVNIKLAKFGVL-GTLQIIKATRKSGLHLMIDGMIETRLATGFALHLA 376
D + + A VNIK AK G L +++ GL +M+ MIE+ L T HLA
Sbjct: 194 DAFRELALGAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIESGLGTLANAHLA 253
Query: 377 A 377
A
Sbjct: 254 A 254
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Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions. Length = 265 |
| >gnl|CDD|239434 cd03318, MLE, Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 2e-30
Identities = 86/317 (27%), Positives = 142/317 (44%), Gaps = 28/317 (8%)
Query: 96 VAIRVELSNGCVGWGEVAVV--PLVTGDQT---KALVKVREACQFLRQ----SPPTTLNF 146
V +R+ S+G VG GE P G+ KA++ ++L T +
Sbjct: 31 VLVRLTTSDGVVGIGEATTPGGPAWGGESPETIKAIID-----RYLAPLLIGRDATNIGA 85
Query: 147 ALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSP 205
A+ + R + G+ FA +A +EMAL+DA + +P+ L GG +SL A T+ +
Sbjct: 86 AMALLDRAVAGNLFA--KAAIEMALLDAQGRRLGLPVSELLGGRVRDSLPVAWTLASGDT 143
Query: 206 AEASELASKYCKLG-FSTLKLNVGRNITA-DFDVLQAIHAVHP-HCSFILDANEGYTSEE 262
A + + G KL +G A D ++AI S +D N+ +
Sbjct: 144 ERDIAEAEEMLEAGRHRRFKLKMGARPPADDLAHVEAIAKALGDRASVRVDVNQAWDEST 203
Query: 263 AVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKV 322
A+ L +L GV L EQPV R++ GL + R + ++ADES D ++
Sbjct: 204 AIRALPRLEAAGV--ELIEQPVPRENLDGLARL----RSRNRVPIMADESVSGPADAFEL 257
Query: 323 MQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGC 381
+ A V ++K+AK G+ ++ +G+ L M+E+ + T + HL A L
Sbjct: 258 ARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLESSIGTAASAHLFATLPS 317
Query: 382 IKY-VNLNTPFLLSEDP 397
+ + L P LL+ED
Sbjct: 318 LPFGCELFGPLLLAEDL 334
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This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. Length = 365 |
| >gnl|CDD|162905 TIGR02534, mucon_cyclo, muconate and chloromuconate cycloisomerases | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 6e-26
Identities = 78/342 (22%), Positives = 143/342 (41%), Gaps = 22/342 (6%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVP--LVTGDQTK 124
+Q E ++V P L +++ V +R+ +G +G+GE L G ++
Sbjct: 1 IQSVETILVDVPTIRPHKLATTTMTEQTLVLVRIRTEDGVIGYGE-GTTIGGLWWGGESP 59
Query: 125 ALVKVREACQF---LRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDI 181
+K L T + + ++ +++ G+ FA +A V+ AL DA A + +
Sbjct: 60 ETIKANIDTYLAPVLVGRDATEIAAIMADLEKVVAGNRFA--KAAVDTALHDAQARRLGV 117
Query: 182 PLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKL-GFSTLKLNVGRNITADFDVLQ 239
P+ L GG +S+ T+ + A + + + KL +G AD DV
Sbjct: 118 PVSELLGGRVRDSVDVTWTLASGDTDRDIAEAEERIEEKRHRSFKLKIGARDPAD-DVAH 176
Query: 240 AI---HAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVS 296
+ A+ S +D N + A+ L +L D GV L EQP ++ L ++
Sbjct: 177 VVAIAKALGDRASVRVDVNAAWDERTALHYLPQLADAGV--ELIEQPTPAENREALARLT 234
Query: 297 NFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGL 355
+ + ++ADES D + + + A V +K K G+L + +I +G+
Sbjct: 235 ----RRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAGI 290
Query: 356 HLMIDGMIETRLATGFALHLAAGLGCIKY-VNLNTPFLLSED 396
L M+E + T + H A + + L P LL ++
Sbjct: 291 ALYGGTMLEGPIGTIASAHFFATFPALSFGTELFGPLLLKDE 332
|
This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2). Length = 368 |
| >gnl|CDD|239433 cd03317, NAAAR, N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 7e-25
Identities = 67/289 (23%), Positives = 124/289 (42%), Gaps = 24/289 (8%)
Query: 98 IRVELSNGCVGWGEVAVV--PLVTG-DQTKALVKVREACQFLRQSPPTTLN--FALDEIA 152
+ + G G+GEV P T A +++ L + + E
Sbjct: 29 VELTDEEGITGYGEVVAFEGPFYTEETNATAWHILKD--YLLPLLLGREFSHPEEVSERL 86
Query: 153 RILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEAS-EL 211
+ G+ A +AG+EMA+ D A + L + GG +S+ ++I E +
Sbjct: 87 APIKGNNMA--KAGLEMAVWDLYAKAQGQSLAQYLGGTRDSIPVGVSIGIQDDVEQLLKQ 144
Query: 212 ASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLN 271
+Y + G+ +KL + D + L+A+ P + DAN YT + +L +L+
Sbjct: 145 IERYLEEGYKRIKLKIKPGW--DVEPLKAVRERFPDIPLMADANSAYTLADI-PLLKRLD 201
Query: 272 DMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGIS--VVADESCRSLNDVQKVMQENLAS 329
+ G+ ++ EQP+ DD H A + + DES +S D +K ++
Sbjct: 202 EYGL--LMIEQPLAADDLID-H-----AELQKLLKTPICLDESIQSAEDARKAIELGACK 253
Query: 330 VVNIKLAKFGVLG-TLQIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377
++NIK + G L L+I ++ G+ + GM+E+ + + LA+
Sbjct: 254 IINIKPGRVGGLTEALKIHDLCQEHGIPVWCGGMLESGIGRAHNVALAS 302
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NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Length = 354 |
| >gnl|CDD|238188 cd00308, enolase_like, Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 1e-22
Identities = 54/219 (24%), Positives = 92/219 (42%), Gaps = 40/219 (18%)
Query: 163 VRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFST 222
V +G++MAL D A ++ +PL L GG S V PA S + +
Sbjct: 43 VISGIDMALWDLAAKALGVPLAELLGGGSR--------DRV-PAYGSI---ERVRA---- 86
Query: 223 LKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQ 282
++ G + +DAN +T +EA+ ++ L G E+
Sbjct: 87 VREAFGPDA-----------------RLAVDANGAWTPKEAIRLIRALEKYG--LAWIEE 127
Query: 283 PVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VL 341
P DD G + R GI + ADES +++D + ++ ++ IK + G +
Sbjct: 128 PCAPDDLEGYAAL----RRRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLT 183
Query: 342 GTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLG 380
+ + G+ +M+ G +E+ + T ALHLAA L
Sbjct: 184 ESRRAADLAEAFGIRVMVHGTLESSIGTAAALHLAAALP 222
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Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase. Length = 229 |
| >gnl|CDD|239436 cd03320, OSBS, o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 3e-22
Identities = 74/305 (24%), Positives = 112/305 (36%), Gaps = 64/305 (20%)
Query: 79 LSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQ 138
LS PL + + +R+E G VGWGE+A PL
Sbjct: 10 LSRPLGTSRGRLTRRRGLLLRLEDLTGPVGWGEIA--PL--------------------- 46
Query: 139 SPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAI 198
+ G+E AL + A + R N +
Sbjct: 47 -----------------------PLAFGIESALANLEALLVGFTRPR------NRIPVNA 77
Query: 199 TIPAVSPAEASELASKYCKLGFSTLKLNVG-RNITADFDVLQAIHAVHP-HCSFILDANE 256
+PA A E + Y G+ T+KL VG + D L+A+ P LDAN
Sbjct: 78 LLPAGDAAALGEAKAAY-GGGYRTVKLKVGATSFEEDLARLRALREALPADAKLRLDANG 136
Query: 257 GYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSL 316
G++ EEA+ L L + EQP+ DD + L R G+ + DES R L
Sbjct: 137 GWSLEEALAFLEALAAGRI--EYIEQPLPPDDLAELR------RLAAGVPIALDESLRRL 188
Query: 317 NDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHL 375
+D + + +K A G L++ + R G+ ++ +E+ + G HL
Sbjct: 189 DDPLALAAAGALGALVLKPALLGGPRALLELAEEARARGIPAVVSSALESSIGLGALAHL 248
Query: 376 AAGLG 380
AA L
Sbjct: 249 AAALP 253
|
Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Length = 263 |
| >gnl|CDD|239432 cd03316, MR_like, Mandelate racemase (MR)-like subfamily of the enolase superfamily | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 1e-20
Identities = 67/327 (20%), Positives = 121/327 (37%), Gaps = 51/327 (15%)
Query: 79 LSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQ 138
L PL +V V +RV +G GWGE P A ++ A + +
Sbjct: 10 LRVPLPEPGGAVTWRNLVLVRVTTDDGITGWGEA--YPGGRPSAVAAAIEDLLAPLLIGR 67
Query: 139 SPPTTLNFALDEIARIL--------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA 190
P ++ + L G + + V++AL D + +P+++L GG
Sbjct: 68 DP-----LDIERLWEKLYRRLFWRGRGGVAMAAISAVDIALWDIKGKAAGVPVYKLLGGK 122
Query: 191 SNSLSTAITIPA--------VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIH 242
+ SP E +E A + GF+ +KL VG + D+ + +
Sbjct: 123 VRD-----RVRVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLA 177
Query: 243 AVH-------PHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDV 295
V P ++DAN + EA+ + L + + FE+PV DD GL +
Sbjct: 178 RVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYDLF--WFEEPVPPDDLEGLARL 235
Query: 296 SNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSG 354
R + + A E+ + + + +++ ++ + K G+ +I G
Sbjct: 236 ----RQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAEAHG 291
Query: 355 L----HLMIDGMIETRLATGFALHLAA 377
+ H + +LHLAA
Sbjct: 292 VRVAPHGAGGP-----IGLAASLHLAA 313
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD). Length = 357 |
| >gnl|CDD|213667 TIGR01928, menC_lowGC/arch, o-succinylbenzoate synthase | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 1e-17
Identities = 63/285 (22%), Positives = 113/285 (39%), Gaps = 18/285 (6%)
Query: 98 IRVELSNGCVGWGEVAV--VPLVTGDQTKALVKVRE--ACQFLRQSPPTTLNFALDEIAR 153
I + G G+GEV P T + + + E + + E+ R
Sbjct: 26 IELIDDKGNAGFGEVVAFQTPWYTHETIATVKHIIEDFFEPNINKEFEHP--SEALELVR 83
Query: 154 ILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELAS 213
L G+ A +AG+EMAL D L G + + + +
Sbjct: 84 SLKGTPMA--KAGLEMALWDMYHKLPSFSLAYGQGKLRDKAPAGAVSGLANDEQMLKQIE 141
Query: 214 KYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDM 273
G+ +KL + I +++ P ++DANE Y ++ L +L+
Sbjct: 142 SLKATGYKRIKLKITPQI--MHQLVKLRRLRFPQIPLVIDANESYDLQD-FPRLKELDRY 198
Query: 274 GVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333
++ E+P DD S L +++ + DES SL+D + +++ V+NI
Sbjct: 199 QLL--YIEEPFKIDDISMLDELA----KGTITPICLDESITSLDDARNLIELGNVKVINI 252
Query: 334 KLAKFGVLG-TLQIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377
K + G L + I ++ G + I GM+ET ++ F + LA+
Sbjct: 253 KPGRLGGLTEVQKAIDTCKEHGAKVWIGGMLETGISRAFNVALAS 297
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 324 |
| >gnl|CDD|214914 smart00922, MR_MLE, Mandelate racemase / muconate lactonizing enzyme, C-terminal domain | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 1e-15
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 205 PAEASELASKYCK-LGFSTLKLNVGRNITADFDVLQAIH-AVHPHCSFILDANEGYTSEE 262
P E +E A + GF +K+ VG D + A+ AV P ++DAN +T+EE
Sbjct: 1 PEELAEAARRAVAEAGFRAVKVKVGGGPLEDLARVAAVREAVGPDADLMVDANGAWTAEE 60
Query: 263 AVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVS 296
A+ L L+++G E+PV DD GL ++
Sbjct: 61 AIRALEALDELG--LEWIEEPVPPDDLEGLAELR 92
|
Mandelate racemase (MR) and muconate lactonizing enzyme (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyze mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures.. This entry represents the C-terminal region of these proteins. Length = 97 |
| >gnl|CDD|233641 TIGR01927, menC_gamma/gm+, o-succinylbenzoate synthase | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 2e-14
Identities = 70/289 (24%), Positives = 110/289 (38%), Gaps = 35/289 (12%)
Query: 97 AIRVEL-SNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARIL 155
+ V L G GWGE+A +P G T+ L EA F R ++ I L
Sbjct: 23 GLIVRLTDEGRTGWGEIAPLP---GFGTETL---AEALDFCRALIEEITRGDIEAIDDQL 76
Query: 156 PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKY 215
P SV G E A L L G ++ + + + + L +
Sbjct: 77 P-----SVAFGFESA------------LIELESGDELPPASNYYVALLPAGDPALLLLRS 119
Query: 216 CKL-GFSTLKLNVGR-NITADFDVLQAIHAVHP-HCSFILDANEGYTSEEAVEVLGKLN- 271
K GF T K VG + + ++ + P LDAN G + +EA + L L+
Sbjct: 120 AKAEGFRTFKWKVGVGELAREGMLVNLLLEALPDKAELRLDANGGLSPDEAQQFLKALDP 179
Query: 272 DMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVV 331
++ E+P+ D ++S F+ T G ++ DES L + +
Sbjct: 180 NLRGRIAFLEEPLPDAD-----EMSAFSEAT-GTAIALDESLWELPQLADEYGPGWRGAL 233
Query: 332 NIKLAKFGVLGTL-QIIKATRKSGLHLMIDGMIETRLATGFALHLAAGL 379
IK A G L + + + GL + + E+ +A G LAA L
Sbjct: 234 VIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFESSIALGQLARLAAKL 282
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 307 |
| >gnl|CDD|215530 PLN02980, PLN02980, 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 2e-13
Identities = 75/263 (28%), Positives = 117/263 (44%), Gaps = 39/263 (14%)
Query: 77 VALSAPLSLGLSSVENV--ENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQ 134
+ L AP + E + + L +G VG+GEVA + + D L+ V E +
Sbjct: 943 IQLCAPPTSASVDFSQFHREGFILSLSLEDGSVGFGEVAPLEIHEED----LLDVEEQLR 998
Query: 135 FLRQS-PPTTLNFALDEIAR-----------ILPGSEFASVRAGVEMALIDAVANSIDIP 182
FL ++F L + I P S F SVR G+EMA+++A+A
Sbjct: 999 FLLHVIKGAKISFMLPLLKGSFSSWIWSELGIPPSSIFPSVRCGLEMAILNAIAVRHGSS 1058
Query: 183 LWRL---FGGASNSL--STAITIPAV-----SPAEASELASKYCKLGFSTLKLNVGRNIT 232
L + + N S ++ I A+ SP E + +A K + GFS +KL VGR ++
Sbjct: 1059 LLNILDPYQKDENGSEQSHSVQICALLDSNGSPLEVAYVARKLVEEGFSAIKLKVGRRVS 1118
Query: 233 A--DFDVLQAIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW 289
D V+Q + AV DAN +T EEA+E + + + E+PV +D
Sbjct: 1119 PIQDAAVIQEVRKAVGYQIELRADANRNWTYEEAIEFGSLVKSCNLKYI--EEPVQDED- 1175
Query: 290 SGLHDVSNFARDTYGISVVADES 312
D+ F +T G+ V DE+
Sbjct: 1176 ----DLIKFCEET-GLPVALDET 1193
|
Length = 1655 |
| >gnl|CDD|185083 PRK15129, PRK15129, L-Ala-D/L-Glu epimerase; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 4e-12
Identities = 69/256 (26%), Positives = 117/256 (45%), Gaps = 32/256 (12%)
Query: 149 DEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFG-GASNSLSTAITIPAVSPAE 207
+ + ++LP + R V+ AL D A L +L G +++TA T+ +P +
Sbjct: 76 EALQKLLPA---GAARNAVDCALWDLAARQQQQSLAQLIGITLPETVTTAQTVVIGTPEQ 132
Query: 208 ASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVL 267
+ AS + G LK+ + ++ ++ + AI + P + I+DANE + +E
Sbjct: 133 MANSASALWQAGAKLLKVKLDNHLISE--RMVAIRSAVPDATLIVDANESWRAEGLAARC 190
Query: 268 GKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL 327
L D+GV + EQP+ D + L NF + + + ADESC + + +L
Sbjct: 191 QLLADLGV--AMLEQPLPAQDDAAL---ENF---IHPLPICADESCHT--------RSSL 234
Query: 328 ASV------VNIKLAKFGVL-GTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLG 380
++ VNIKL K G L L + R G LM+ M+ T A AL L
Sbjct: 235 KALKGRYEMVNIKLDKTGGLTEALALATEARAQGFALMLGCMLCTSRAISAALPLVPQ-- 292
Query: 381 CIKYVNLNTPFLLSED 396
+++ +L+ P L+ D
Sbjct: 293 -VRFADLDGPTWLAVD 307
|
Length = 321 |
| >gnl|CDD|239437 cd03321, mandelate_racemase, Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 6e-12
Identities = 56/236 (23%), Positives = 95/236 (40%), Gaps = 17/236 (7%)
Query: 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTK 124
V + R +NV + P+ + +V V I + G G + K
Sbjct: 1 VLITGLRARAVNVPMQYPVHTSVGTVATAPLVLIDLATDEGVTGHSYLFTYTPAALKSLK 60
Query: 125 ALVKVREACQFLRQSP--PTTLNFALDEIARILPGSEFASV-RAGVEMALIDAVANSIDI 181
L+ + L P P L AL + R+L + + AG++MA DA+A +
Sbjct: 61 QLL--DDMAALLVGEPLAPAELERALAKRFRLLGYTGLVRMAAAGIDMAAWDALAKVHGL 118
Query: 182 PLWRLFGGASNSL----STAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITA-DFD 236
PL +L GG + S + ++ A A + GF +K +G D
Sbjct: 119 PLAKLLGGNPRPVQAYDSHGLDGAKLATERAVTAA----EEGFHAVKTKIGYPTADEDLA 174
Query: 237 VLQAI-HAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSG 291
V+++I AV ++D N+ T EA+E L+ G+ + E+P + D+ G
Sbjct: 175 VVRSIRQAVGDGVGLMVDYNQSLTVPEAIERGQALDQEGLTWI--EEPTLQHDYEG 228
|
MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Length = 355 |
| >gnl|CDD|235061 PRK02714, PRK02714, O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 73/295 (24%), Positives = 121/295 (41%), Gaps = 40/295 (13%)
Query: 94 ENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIAR 153
E + +R+ G +GWGE+A +P G +T + EA F +Q P ++I
Sbjct: 29 EGIILRLTDETGKIGWGEIAPLPWF-GSET-----LEEALAFCQQLPG---EITPEQIFS 79
Query: 154 I---LPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASE 210
I LP +F G E AL + + ++ L N LS + +PA A +
Sbjct: 80 IPDALPACQF-----GFESALENESGSRSNVTL--------NPLSYSALLPAGEAAL--Q 124
Query: 211 LASKYCKLGFSTLKLNVGRNITAD-FDVLQAIHAVHP-HCSFILDANEGYTSEEA---VE 265
+ G+ T K +G + + + + P LDAN G + EEA ++
Sbjct: 125 QWQTLWQQGYRTFKWKIGVDPLEQELKIFEQLLERLPAGAKLRLDANGGLSLEEAKRWLQ 184
Query: 266 VLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQE 325
+ + G I EQP+ D + + +S Y + DES +L +Q+ Q+
Sbjct: 185 LCDRR-LSGKIE-FIEQPLPPDQFDEMLQLSQ----DYQTPIALDESVANLAQLQQCYQQ 238
Query: 326 NLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLG 380
+ IK A G L+ + ++ L + + ET + AL LAA L
Sbjct: 239 GWRGIFVIKPAIAGSPSRLR--QFCQQHPLDAVFSSVFETAIGRKAALALAAELS 291
|
Length = 320 |
| >gnl|CDD|222086 pfam13378, MR_MLE_C, Enolase C-terminal domain-like | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 2e-10
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 310 DESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGMIETRLA 368
ES SL D +++++ ++ + + G+ L+I G+ + GM E +
Sbjct: 1 GESLYSLADFRRLLEAGAVDIIQPDVTRVGGITEALKIAALAEAFGVPVAPHGM-EGGIG 59
Query: 369 TGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEV 404
+LHLAA L + P+LL +D G V
Sbjct: 60 LAASLHLAAALPNFDILEYV-PYLLPDDLLTGPPPV 94
|
This domain appears at the C-terminus of many of the proteins that carry the MR_MLE, pfam01188 and MR_MLE_N pfam02746 domains. EC:4.2.1.40. Length = 111 |
| >gnl|CDD|201648 pfam01188, MR_MLE, Mandelate racemase / muconate lactonizing enzyme, C-terminal domain | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 3e-09
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 237 VLQAIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDV 295
+ A+ AV P +DAN +T EEA+ + L G+ + E+P+ DD GL ++
Sbjct: 1 RVAAVREAVGPDVDLRVDANGAWTPEEAIRLARALEPYGL--LWIEEPLPPDDLEGLAEL 58
Query: 296 S 296
Sbjct: 59 R 59
|
C-terminal domain is TIM barrel fold, dehydratase-like domain. Manganese is associated with this domain. Length = 69 |
| >gnl|CDD|235084 PRK02901, PRK02901, O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 3e-07
Identities = 57/207 (27%), Positives = 93/207 (44%), Gaps = 24/207 (11%)
Query: 199 TIPAVSPAEASELASKY--CKLGFSTLKLNV---GRNITADFDVLQAIH-AVHPHCSFIL 252
T+PAV A+ E+ +++ C+ T K+ V G+ + D + A+ A+ P +
Sbjct: 84 TVPAVDAAQVPEVLARFPGCR----TAKVKVAEPGQTLADDVARVNAVRDALGPDGRVRV 139
Query: 253 DANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFA--RDTYGISVVAD 310
DAN G++ +EAV L+ G + + EQP V A R G+ + AD
Sbjct: 140 DANGGWSVDEAVAAARALDADGPLEYV-EQPC--------ATVEELAELRRRVGVPIAAD 190
Query: 311 ESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIETRLATG 370
ES R D +V + A V +K+A G G + + GL +++ ++T +
Sbjct: 191 ESIRRAEDPLRVARAGAADVAVLKVAPLG--GVRAALDIAEQIGLPVVVSSALDTSVGIA 248
Query: 371 FALHLAAGLGCIKY-VNLNTPFLLSED 396
L LAA L + + L T L ED
Sbjct: 249 AGLALAAALPELDHACGLATGGLFEED 275
|
Length = 327 |
| >gnl|CDD|239444 cd03328, MR_like_3, Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3 | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 6e-07
Identities = 72/257 (28%), Positives = 111/257 (43%), Gaps = 28/257 (10%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVG----WGEVAVVPLVTGDQ 122
V+R E R V AP + G + + V + V + G G + + A LV G
Sbjct: 2 VERVEARAYTVPTDAPEADGTLAWDATTLVLVEVR-AGGRTGLGYTYADAAAAALVDG-L 59
Query: 123 TKALVKVREACQFLRQSPPT---TLNFALDEIARILPGSEFASVRAGVEMALIDAVANSI 179
+V+ R+A PP + A+ R PG ++ A V++AL D A +
Sbjct: 60 LAPVVEGRDAL-----DPPAAWEAMQRAVRNAGR--PGVAAMAISA-VDIALWDLKARLL 111
Query: 180 DIPLWRLFGGASNSL----STAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADF 235
+PL RL G A +S+ S T + E S + G +K+ +GR+ D
Sbjct: 112 GLPLARLLGRAHDSVPVYGSGGFT--SYDDDRLREQLSGWVAQGIPRVKMKIGRDPRRDP 169
Query: 236 DVLQAIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHD 294
D + A A+ P +DAN Y+ ++A+ + D GV FE+PV DD +GL
Sbjct: 170 DRVAAARRAIGPDAELFVDANGAYSRKQALALARAFADEGV--TWFEEPVSSDDLAGLRL 227
Query: 295 VSNFARDTYGISVVADE 311
V R G+ + A E
Sbjct: 228 VR--ERGPAGMDIAAGE 242
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. Length = 352 |
| >gnl|CDD|239441 cd03325, D-galactonate_dehydratase, D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 6e-06
Identities = 71/353 (20%), Positives = 133/353 (37%), Gaps = 58/353 (16%)
Query: 96 VAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARIL 155
+ +++E G VGWGE P V G V+E +L P ++ +++
Sbjct: 15 LFVKIETDEGVVGWGE----PTVEGKARTVEAAVQELEDYLIGKDPM----NIEHHWQVM 66
Query: 156 -------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGAS-NSLSTAITIPAVSPAE 207
G S +G++ AL D + +P+ +L GG + + I P++
Sbjct: 67 YRGGFYRGGPVLMSAISGIDQALWDIKGKVLGVPVHQLLGGQVRDRVRVYSWIGGDRPSD 126
Query: 208 ASELASKYCKLGFSTLKLN---------VGRNITADFDVLQAI-HAVHPHCSFILDANEG 257
+E A + GF+ +K+N + + A + + A+ AV P +D + G
Sbjct: 127 VAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREAVGPDIDIGVDFH-G 185
Query: 258 YTSEEAVEVLGK-LNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSL 316
S+ + L K L + E+PV ++ L +++ I + E S
Sbjct: 186 RVSKPMAKDLAKELEPYR--LLFIEEPVLPENVEALAEIAARTT----IPIATGERLFSR 239
Query: 317 NDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIET---RLATGFAL 373
D ++++++ ++ ++ G G I +K I M E LA L
Sbjct: 240 WDFKELLEDGAVDIIQPDISHAG--G----ITELKK------IAAMAEAYDVALAPHCPL 287
Query: 374 HLAAGLGCIKYVNLNTP-FLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTI 425
A + +V+ +TP FL+ E + G YN +
Sbjct: 288 GPIALAASL-HVDASTPNFLIQE-------QSLGIHYNEGDDLLDYLVDPEVF 332
|
D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Length = 352 |
| >gnl|CDD|217212 pfam02746, MR_MLE_N, Mandelate racemase / muconate lactonizing enzyme, N-terminal domain | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 6e-06
Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 6/110 (5%)
Query: 80 SAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREA-CQFLRQ 138
P+ + +V+ V +R+E S G VG GE G + + L
Sbjct: 13 LRPIQMAFGTVQQQSLVIVRIETSEGVVGIGEAT---SYGGRAETIKAILDDHLAPLLIG 69
Query: 139 SPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFG 188
++ + R G+ A +A ++MAL D A +++PL L G
Sbjct: 70 RDAANISDLWQLMYRAALGNMSA--KAAIDMALWDLKAKVLNLPLADLLG 117
|
SCOP reports fold similarity with enolase N-terminal domain. Length = 117 |
| >gnl|CDD|239440 cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 4/131 (3%)
Query: 210 ELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLG 268
L + GF+ KL VG ++ D + V P ++DAN+ + EA+E +
Sbjct: 202 RLCKEALAQGFTHFKLKVGADLEDDIRRCRLAREVIGPDNKLMIDANQRWDVPEAIEWVK 261
Query: 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLA 328
+L + P E+P DD G + A I V E C++ ++++Q
Sbjct: 262 QLAEFK--PWWIEEPTSPDDILGHAAIRK-ALAPLPIGVATGEHCQNRVVFKQLLQAGAI 318
Query: 329 SVVNIKLAKFG 339
VV I + G
Sbjct: 319 DVVQIDSCRLG 329
|
rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Length = 415 |
| >gnl|CDD|235345 PRK05105, PRK05105, O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.004
Identities = 48/146 (32%), Positives = 66/146 (45%), Gaps = 16/146 (10%)
Query: 237 VLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF-EQPVHRDDWSGLHDV 295
+L+AI P LDAN G+T E+A + + + F E+P D D
Sbjct: 151 LLEAI----PDLKLRLDANRGWTLEKAQQFAKYVPPDYRHRIAFLEEPCKTPD-----DS 201
Query: 296 SNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQ-IIKATRKSG 354
FAR T GI++ DES R D Q + + ++V IK G L Q +I+ G
Sbjct: 202 RAFARAT-GIAIAWDESLRE-PDFQFEAEPGVRAIV-IKPTLTGSLEKCQELIEQAHALG 258
Query: 355 LHLMIDGMIETRLA-TGFALHLAAGL 379
L +I IE+ L T A LAA L
Sbjct: 259 LRAVISSSIESSLGLTQLA-RLAAWL 283
|
Length = 322 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 427 | |||
| cd03318 | 365 | MLE Muconate Lactonizing Enzyme (MLE), an homoocta | 100.0 | |
| TIGR02534 | 368 | mucon_cyclo muconate and chloromuconate cycloisome | 100.0 | |
| cd03317 | 354 | NAAAR N-acylamino acid racemase (NAAAR), an octame | 100.0 | |
| cd03323 | 395 | D-glucarate_dehydratase D-Glucarate dehydratase (G | 100.0 | |
| cd03328 | 352 | MR_like_3 Mandelate racemase (MR)-like subfamily o | 100.0 | |
| cd03321 | 355 | mandelate_racemase Mandelate racemase (MR) catalyz | 100.0 | |
| PRK15072 | 404 | bifunctional D-altronate/D-mannonate dehydratase; | 100.0 | |
| cd03329 | 368 | MR_like_4 Mandelate racemase (MR)-like subfamily o | 100.0 | |
| cd03325 | 352 | D-galactonate_dehydratase D-galactonate dehydratas | 100.0 | |
| PRK14017 | 382 | galactonate dehydratase; Provisional | 100.0 | |
| cd03316 | 357 | MR_like Mandelate racemase (MR)-like subfamily of | 100.0 | |
| cd03326 | 385 | MR_like_1 Mandelate racemase (MR)-like subfamily o | 100.0 | |
| cd03322 | 361 | rpsA The starvation sensing protein RpsA from E.co | 100.0 | |
| cd03327 | 341 | MR_like_2 Mandelate racemase (MR)-like subfamily o | 100.0 | |
| cd03324 | 415 | rTSbeta_L-fuconate_dehydratase Human rTS beta is e | 100.0 | |
| TIGR03247 | 441 | glucar-dehydr glucarate dehydratase. Glucarate deh | 100.0 | |
| COG4948 | 372 | L-alanine-DL-glutamate epimerase and related enzym | 100.0 | |
| TIGR01928 | 324 | menC_lowGC/arch o-succinylbenzoic acid (OSB) synth | 100.0 | |
| PRK15129 | 321 | L-Ala-D/L-Glu epimerase; Provisional | 100.0 | |
| cd03319 | 316 | L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat | 100.0 | |
| PRK15440 | 394 | L-rhamnonate dehydratase; Provisional | 100.0 | |
| cd03315 | 265 | MLE_like Muconate lactonizing enzyme (MLE) like su | 100.0 | |
| TIGR01927 | 307 | menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthe | 100.0 | |
| cd03320 | 263 | OSBS o-Succinylbenzoate synthase (OSBS) catalyzes | 100.0 | |
| PRK05105 | 322 | O-succinylbenzoate synthase; Provisional | 100.0 | |
| PRK02714 | 320 | O-succinylbenzoate synthase; Provisional | 100.0 | |
| TIGR01502 | 408 | B_methylAsp_ase methylaspartate ammonia-lyase. Thi | 100.0 | |
| cd03314 | 369 | MAL Methylaspartate ammonia lyase (3-methylasparta | 100.0 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 100.0 | |
| cd00308 | 229 | enolase_like Enolase-superfamily, characterized by | 100.0 | |
| PRK02901 | 327 | O-succinylbenzoate synthase; Provisional | 100.0 | |
| PRK00077 | 425 | eno enolase; Provisional | 100.0 | |
| cd03313 | 408 | enolase Enolase: Enolases are homodimeric enzymes | 100.0 | |
| TIGR01060 | 425 | eno phosphopyruvate hydratase. Alternate name: eno | 100.0 | |
| PLN00191 | 457 | enolase | 100.0 | |
| PTZ00081 | 439 | enolase; Provisional | 99.97 | |
| COG1441 | 321 | MenC O-succinylbenzoate synthase [Coenzyme metabol | 99.96 | |
| PF02746 | 117 | MR_MLE_N: Mandelate racemase / muconate lactonizin | 99.88 | |
| PF13378 | 111 | MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FC | 99.85 | |
| COG0148 | 423 | Eno Enolase [Carbohydrate transport and metabolism | 99.82 | |
| PRK08350 | 341 | hypothetical protein; Provisional | 99.8 | |
| PF01188 | 67 | MR_MLE: Mandelate racemase / muconate lactonizing | 99.67 | |
| PTZ00378 | 518 | hypothetical protein; Provisional | 99.67 | |
| KOG2670 | 433 | consensus Enolase [Carbohydrate transport and meta | 99.56 | |
| PF00113 | 295 | Enolase_C: Enolase, C-terminal TIM barrel domain; | 99.21 | |
| COG3799 | 410 | Mal Methylaspartate ammonia-lyase [Amino acid tran | 99.2 | |
| PF07476 | 248 | MAAL_C: Methylaspartate ammonia-lyase C-terminus; | 99.2 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 99.04 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 98.99 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 98.66 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 98.58 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 98.49 | |
| PF03952 | 132 | Enolase_N: Enolase, N-terminal domain; InterPro: I | 98.27 | |
| PF05034 | 159 | MAAL_N: Methylaspartate ammonia-lyase N-terminus; | 97.29 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 97.17 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 97.05 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 96.79 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 96.7 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 96.65 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 96.6 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 96.51 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 96.35 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 96.34 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 96.21 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 96.08 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 96.07 | |
| PRK10605 | 362 | N-ethylmaleimide reductase; Provisional | 96.06 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 95.96 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 95.78 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 95.73 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 95.63 | |
| COG1902 | 363 | NemA NADH:flavin oxidoreductases, Old Yellow Enzym | 95.42 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 95.41 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 95.21 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 94.96 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 94.8 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 94.52 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 94.45 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) | 94.35 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 94.06 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 93.74 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 93.49 | |
| PF00724 | 341 | Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox | 93.37 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 93.17 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 92.62 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 92.13 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 92.05 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 92.03 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 91.74 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 91.68 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 91.37 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 91.27 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 91.23 | |
| TIGR02321 | 290 | Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f | 90.96 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 90.92 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 90.84 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 90.45 | |
| cd06660 | 285 | Aldo_ket_red Aldo-keto reductases (AKRs) are a sup | 90.25 | |
| COG0821 | 361 | gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat | 90.1 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 89.78 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 89.59 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 89.53 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 89.34 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 88.99 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 88.83 | |
| PLN02411 | 391 | 12-oxophytodienoate reductase | 88.58 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 88.47 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 88.3 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 88.26 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 88.26 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 88.14 | |
| TIGR00612 | 346 | ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho | 88.11 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 88.03 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 87.74 | |
| PRK00366 | 360 | ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s | 87.67 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 87.54 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 87.52 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 87.36 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 87.0 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 86.89 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 86.86 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 86.8 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 86.36 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 86.08 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 85.79 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 85.71 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 85.63 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 85.63 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 85.6 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 85.47 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 85.39 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 85.22 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 84.73 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 84.56 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 84.47 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 84.29 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 83.71 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 83.69 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 83.51 | |
| PRK07535 | 261 | methyltetrahydrofolate:corrinoid/iron-sulfur prote | 83.38 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 83.33 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 82.92 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 82.82 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 82.6 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 82.21 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 81.89 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 81.81 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 81.78 | |
| cd00956 | 211 | Transaldolase_FSA Transaldolase-like fructose-6-ph | 81.69 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 81.54 | |
| KOG2335 | 358 | consensus tRNA-dihydrouridine synthase [Translatio | 81.51 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 81.49 | |
| PRK09234 | 843 | fbiC FO synthase; Reviewed | 80.96 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 80.71 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 80.46 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 80.14 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 80.07 |
| >cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-68 Score=540.09 Aligned_cols=353 Identities=24% Similarity=0.356 Sum_probs=318.4
Q ss_pred eEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCC--CCCcchHH-HHHHHH-HHhhHhcCCCC
Q 014285 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVP--LVTGDQTK-ALVKVR-EACQFLRQSPP 141 (427)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~--~~s~~~~~-~~~~~~-~~~~~l~g~~~ 141 (427)
+|++++++.+++|++.|+.++.++.+.++.++|||+|++|.+|||||.+.+ .++++..+ ....++ .+.|.+.|+++
T Consensus 1 ~I~~i~~~~~~lpl~~~~~~~~~~~~~~~~~~V~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~G~~~ 80 (365)
T cd03318 1 KIEAIETTIVDLPTRRPHQFAGTTMHTQSLVLVRLTTSDGVVGIGEATTPGGPAWGGESPETIKAIIDRYLAPLLIGRDA 80 (365)
T ss_pred CeEEEEEEEEeccccCceEEeeeeEeecceEEEEEEECCCCeEEEecCCCCCCccCCCCHHHHHHHHHHhhHHHHcCCCh
Confidence 589999999999999999999999999999999999999999999998764 35443332 233444 47899999999
Q ss_pred CCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhhcC-
Q 014285 142 TTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLG- 219 (427)
Q Consensus 142 ~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~G- 219 (427)
.+++.+|+.|++...+. +++++||||||||+.||..|+|+|+||||. ++++|+|++++..+++++.+++++++++|
T Consensus 81 ~~~~~~~~~l~~~~~~~--~~a~said~AlwDl~gK~~g~Pl~~LLGg~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~ 158 (365)
T cd03318 81 TNIGAAMALLDRAVAGN--LFAKAAIEMALLDAQGRRLGLPVSELLGGRVRDSLPVAWTLASGDTERDIAEAEEMLEAGR 158 (365)
T ss_pred HHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHhHcCCCHHHHcCCCcCCceEEEEEEeCCCHHHHHHHHHHHHhCCC
Confidence 99999999987754443 458999999999999999999999999997 78999999988778888888888889999
Q ss_pred CcEEEEeccC-CchhhHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHH
Q 014285 220 FSTLKLNVGR-NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSN 297 (427)
Q Consensus 220 f~~iKlKiG~-~~~~d~~~l~~ir~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~ 297 (427)
|++||+|+|. ++++|+++++++|+. ++++.|++|||++|++++|++++++|+++++. |||||++++|++++++|++
T Consensus 159 f~~~KiKvg~~~~~~d~~~v~avr~~~g~~~~l~iDaN~~~~~~~A~~~~~~l~~~~~~--~iEeP~~~~~~~~~~~l~~ 236 (365)
T cd03318 159 HRRFKLKMGARPPADDLAHVEAIAKALGDRASVRVDVNQAWDESTAIRALPRLEAAGVE--LIEQPVPRENLDGLARLRS 236 (365)
T ss_pred ceEEEEEeCCCChHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHhcCcc--eeeCCCCcccHHHHHHHHh
Confidence 9999999996 788999999999995 67999999999999999999999999999974 9999999999999999986
Q ss_pred hhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHH
Q 014285 298 FARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLA 376 (427)
Q Consensus 298 ~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla 376 (427)
++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.||+|++++++|++
T Consensus 237 ----~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~s~i~~aa~~hla 312 (365)
T cd03318 237 ----RNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLESSIGTAASAHLF 312 (365)
T ss_pred ----hcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcchhHHHHHHHHHHH
Confidence 68999999999999999999999999999999999997 9999999999999999999999999999999999999
Q ss_pred hhcCCcce-eccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 377 AGLGCIKY-VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 377 aal~~~~~-~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+++++..+ .|+++++.+.++++..++.++||++.+|++||||+++|++.|
T Consensus 313 aa~~~~~~~~e~~~~~~~~~~~~~~~~~~~~G~~~~p~~pGlGv~~d~~~l 363 (365)
T cd03318 313 ATLPSLPFGCELFGPLLLAEDLLEEPLAYRDGELHVPTGPGLGVRLDEDKV 363 (365)
T ss_pred HhCCCCcccccccchHhhhcccccCCceeECCEEeCCCCCcCCcccCHHHh
Confidence 99998666 577766666677777888999999999999999999999976
|
This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. |
| >TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-68 Score=540.31 Aligned_cols=352 Identities=21% Similarity=0.336 Sum_probs=314.9
Q ss_pred EEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecC--CCCCcchHHH-HHHHH-HHhhHhcCCCCC
Q 014285 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTKA-LVKVR-EACQFLRQSPPT 142 (427)
Q Consensus 67 I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~--~~~s~~~~~~-~~~~~-~~~~~l~g~~~~ 142 (427)
|++++++++++|++.|++++.++.+.++.++|||+|++|++||||+.+. |.++++..+. ...++ .++|.|.|+++.
T Consensus 1 I~~i~~~~~~~pl~~~~~~~~~~~~~~~~~~V~v~t~~G~~G~Ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~ 80 (368)
T TIGR02534 1 IQSVETILVDVPTIRPHKLATTTMTEQTLVLVRIRTEDGVIGYGEGTTIGGLWWGGESPETIKANIDTYLAPVLVGRDAT 80 (368)
T ss_pred CeEEEEEEEeccccCceEEeeEEEeeccEEEEEEEECCCCeEEEecCCCCCCccCCCCHHHHHHHHHHhhHHHHcCCChh
Confidence 6899999999999999999999999999999999999999999999875 4455533332 33344 589999999999
Q ss_pred CHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHh-hcCC
Q 014285 143 TLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYC-KLGF 220 (427)
Q Consensus 143 ~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~-~~Gf 220 (427)
+++.+|+.+.+.+.+. +.+++|||+||||+.||..|+|||+||||. ++++|+|++++..+++++.++++++. ++||
T Consensus 81 ~~~~~~~~~~~~~~~~--~~a~said~AlwDl~gK~~g~Pv~~LLGg~~r~~v~~~~~~~~~~~~~~~~~~~~~~~~~Gf 158 (368)
T TIGR02534 81 EIAAIMADLEKVVAGN--RFAKAAVDTALHDAQARRLGVPVSELLGGRVRDSVDVTWTLASGDTDRDIAEAEERIEEKRH 158 (368)
T ss_pred hHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCceEEEEEEeCCCHHHHHHHHHHHHHhcCc
Confidence 9999999887654333 357999999999999999999999999997 88999999888777776666666655 5899
Q ss_pred cEEEEeccC-CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHh
Q 014285 221 STLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNF 298 (427)
Q Consensus 221 ~~iKlKiG~-~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~ 298 (427)
++||+|+|. ++++|+++++++|+ .++++.|++|||++|++++|++++++|+++++ .|||||++++|++++++|++
T Consensus 159 ~~~KiKvg~~~~~~d~~~v~~~re~~g~~~~l~~DaN~~~~~~~A~~~~~~l~~~~~--~~iEeP~~~~d~~~~~~l~~- 235 (368)
T TIGR02534 159 RSFKLKIGARDPADDVAHVVAIAKALGDRASVRVDVNAAWDERTALHYLPQLADAGV--ELIEQPTPAENREALARLTR- 235 (368)
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHHhcCh--hheECCCCcccHHHHHHHHH-
Confidence 999999986 78999999999999 57999999999999999999999999999987 59999999999999999986
Q ss_pred hccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHh
Q 014285 299 ARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377 (427)
Q Consensus 299 ~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaa 377 (427)
++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++||++||+|++++++|+++
T Consensus 236 ---~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s~i~~aa~~h~~a 312 (368)
T TIGR02534 236 ---RFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEGPIGTIASAHFFA 312 (368)
T ss_pred ---hCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhhHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred hcCCcce-eccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 378 GLGCIKY-VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 378 al~~~~~-~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
++++..+ .|+++++.+.++++.+++.++||++.+|++||||+++|++++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~pGlGv~~d~~~~ 362 (368)
T TIGR02534 313 TFPALSFGTELFGPLLLKDEILTEPLQYEDFQLHLPQGPGLGVEVDEDKV 362 (368)
T ss_pred hCCCCccccccccHHHhhhccccCCceeeCCEEecCCCCcCCcccCHHHH
Confidence 9998766 467677666677888888999999999999999999999875
|
This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2). |
| >cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-65 Score=515.97 Aligned_cols=344 Identities=22% Similarity=0.371 Sum_probs=304.2
Q ss_pred EEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecC--CCCCcchHH-HHHHHHH-HhhHhcCCCCCCHH
Q 014285 70 AEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTK-ALVKVRE-ACQFLRQSPPTTLN 145 (427)
Q Consensus 70 i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~--~~~s~~~~~-~~~~~~~-~~~~l~g~~~~~~~ 145 (427)
++++.+++|+++|+.++.++.+.++.++|||+|++|++||||+.+. |.++++..+ ....+++ +.|.|+|+++.+++
T Consensus 1 ~~~~~~~~pl~~p~~~~~~~~~~~~~~~Vrv~t~~G~~G~GE~~~~~~~~~~~~~~~~~~~~i~~~~~p~l~g~~~~~~~ 80 (354)
T cd03317 1 IELFHVRMPLKFPFETSFGTLNEREFLIVELTDEEGITGYGEVVAFEGPFYTEETNATAWHILKDYLLPLLLGREFSHPE 80 (354)
T ss_pred CEEEEEEecccCceEccceEEEeeeEEEEEEEECCCCeEEEecCCCCCCcccCCCHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 4678999999999999999999999999999999999999999865 556554333 2333443 78999999999999
Q ss_pred HHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecCCCH-HHHHHHHHHHhhcCCcEEE
Q 014285 146 FALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSP-AEASELASKYCKLGFSTLK 224 (427)
Q Consensus 146 ~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~-~~~~~~~~~~~~~Gf~~iK 224 (427)
.+|+.+.+ +.+. +++++||||||||++||.+|+|+|+||||.++++|+|++++..++ +++.+++++++++||++||
T Consensus 81 ~~~~~~~~-~~~~--~~a~aaid~AlwDl~gk~~g~Pv~~LLGg~~~~v~~~~s~~~~~~~~~~~~~~~~~~~~Gf~~~K 157 (354)
T cd03317 81 EVSERLAP-IKGN--NMAKAGLEMAVWDLYAKAQGQSLAQYLGGTRDSIPVGVSIGIQDDVEQLLKQIERYLEEGYKRIK 157 (354)
T ss_pred HHHHHHHH-hcCC--hHHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCeEEeeEEEeCCCcHHHHHHHHHHHHHcCCcEEE
Confidence 99999876 3443 568999999999999999999999999998899999999877765 8889999999999999999
Q ss_pred EeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccC
Q 014285 225 LNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG 304 (427)
Q Consensus 225 lKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~ 304 (427)
+|+|. +.|++++++||+..+++.|++|||++|++++|. ++++|+++++ .|||||++++|++++++|++ +++
T Consensus 158 iKv~~--~~d~~~l~~vr~~~g~~~l~lDaN~~~~~~~a~-~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~ 228 (354)
T cd03317 158 LKIKP--GWDVEPLKAVRERFPDIPLMADANSAYTLADIP-LLKRLDEYGL--LMIEQPLAADDLIDHAELQK----LLK 228 (354)
T ss_pred EecCh--HHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHH-HHHHhhcCCc--cEEECCCChhHHHHHHHHHh----hcC
Confidence 99974 689999999999756999999999999999985 8999999987 49999999999999999986 789
Q ss_pred CeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcc
Q 014285 305 ISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIK 383 (427)
Q Consensus 305 iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~ 383 (427)
+||++||++.+.++++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.||+++.++++|++ ++++..
T Consensus 229 ~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~A~~~gi~~~~g~~~es~l~~~a~~hla-~~~~~~ 307 (354)
T cd03317 229 TPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHDLCQEHGIPVWCGGMLESGIGRAHNVALA-SLPNFT 307 (354)
T ss_pred CCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEecCcccchHHHHHHHHHH-hCCCCC
Confidence 99999999999999999999999999999999998 9999999999999999999999999999999999996 566655
Q ss_pred ee-ccCCC-cccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 384 YV-NLNTP-FLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 384 ~~-e~~~p-~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+. +++.. ..+.++++.+++.++||++.+|++||||+++|++.|
T Consensus 308 ~~~~~~~~~~~~~~dl~~~~~~~~~G~~~~p~~pGlG~~~d~~~l 352 (354)
T cd03317 308 YPGDISASSRYFEEDIITPPFELENGIISVPTGPGIGVTVDREAL 352 (354)
T ss_pred CccccCcchhhhhhccccCCeEeeCCEEECCCCCcCceecCHHHh
Confidence 43 44432 235567777788999999999999999999999976
|
NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-65 Score=518.12 Aligned_cols=345 Identities=17% Similarity=0.219 Sum_probs=298.8
Q ss_pred eEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCC-CCH
Q 014285 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPP-TTL 144 (427)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~-~~~ 144 (427)
||++++++++++|+++|++++.++...++.++|||+||+|++||||+... .+ ....+..+++.++|.++ .+.
T Consensus 1 ~I~~i~~~~~~~p~~~p~~~~~~~~~~~~~~~Vrv~td~G~~G~Ge~~~~----~~---~~~~~~~~~~~llg~~~~~~~ 73 (395)
T cd03323 1 KITEMRVTPVAGHDSPLLNLSGAHEPFFTRNIVELTDDNGNTGVGESPGG----AE---ALEALLEAARSLVGGDVFGAY 73 (395)
T ss_pred CeEEEEEEEEeccCCccccccccCCCcceEEEEEEEECCCCeeccccCCC----HH---HHHHHHHHhHHHhCCCcchhh
Confidence 69999999999999999999887777789999999999999999997531 11 22234567888888877 577
Q ss_pred HHHHHHHHHHCC----C---------ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeec---------
Q 014285 145 NFALDEIARILP----G---------SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIP--------- 201 (427)
Q Consensus 145 ~~~~~~l~~~~~----g---------~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~--------- 201 (427)
+.+|+.|++... | ...+++++||||||||++||.+|+|||+||||. ++++|+|.++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pl~~LLGG~~r~~v~~ya~~~~~~~~~~~~ 153 (395)
T cd03323 74 LAVLESVRVAFADRDAGGRGLQTFDLRTTVHVVTAFEVALLDLLGQALGVPVADLLGGGQRDSVPFLAYLFYKGDRHKTD 153 (395)
T ss_pred HHHHHHHHHHHhcccccccCccccchhHHHHHHHHHHHHHHHHhhhhcCCCHHHHhCCCccCeEEEEEEeeecccccccc
Confidence 889999976531 1 134678999999999999999999999999996 88999998642
Q ss_pred ------------CCCHHHHHHHHHHHhh-cCCcEEEEeccC-CchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHH
Q 014285 202 ------------AVSPAEASELASKYCK-LGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVL 267 (427)
Q Consensus 202 ------------~~~~~~~~~~~~~~~~-~Gf~~iKlKiG~-~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l 267 (427)
..+++++.++++++++ +||++||+|+|. ++++|+++++++|+..|++.||||||++|++++|++++
T Consensus 154 ~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KiKvG~~~~~~di~~v~avRea~~~~~l~vDaN~~w~~~~A~~~~ 233 (395)
T cd03323 154 LPYPWFRDRWGEALTPEGVVRLARAAIDRYGFKSFKLKGGVLPGEEEIEAVKALAEAFPGARLRLDPNGAWSLETAIRLA 233 (395)
T ss_pred ccccccccccccCCCHHHHHHHHHHHHHhcCCcEEEEecCCCCHHHHHHHHHHHHHhCCCCcEEEeCCCCcCHHHHHHHH
Confidence 2478889889988875 699999999996 67899999999999778999999999999999999999
Q ss_pred HHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHH
Q 014285 268 GKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQI 346 (427)
Q Consensus 268 ~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~ 346 (427)
++|++ ++ .|||||++ |+++|++|++ ++++||++||++++..+++++++.+++|++|+|++++| +++++++
T Consensus 234 ~~l~~-~l--~~iEeP~~--d~~~~~~L~~----~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~ki 304 (395)
T cd03323 234 KELEG-VL--AYLEDPCG--GREGMAEFRR----ATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSVRV 304 (395)
T ss_pred HhcCc-CC--CEEECCCC--CHHHHHHHHH----hcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHHHHH
Confidence 99999 87 49999998 8999999986 78999999999999999999999999999999999997 9999999
Q ss_pred HHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcce-eccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCc
Q 014285 347 IKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKY-VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTI 425 (427)
Q Consensus 347 ~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~-~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~ 425 (427)
+++|+++|+++++|++.|++|++++++|++++++|..+ .|...++...++++.+++.++||++.+|++||||+++|+++
T Consensus 305 a~~A~~~gi~~~~h~~~e~~i~~aa~~hlaaa~~~~~~~~d~~~~~~~~~~~~~~~~~~~~G~~~vp~~PGLGv~~d~~~ 384 (395)
T cd03323 305 AQVCETWGLGWGMHSNNHLGISLAMMTHVAAAAPGLITACDTHWIWQDGQVITGEPLRIKDGKVAVPDKPGLGVELDRDK 384 (395)
T ss_pred HHHHHHcCCeEEEecCcccHHHHHHHHHHHHhCCCcccccccchhhhccccccCCCceeeCCEEECCCCCcCCccCCHHH
Confidence 99999999999999999999999999999999998765 23222322223445567889999999999999999999987
Q ss_pred C
Q 014285 426 V 426 (427)
Q Consensus 426 v 426 (427)
|
T Consensus 385 l 385 (395)
T cd03323 385 L 385 (395)
T ss_pred H
Confidence 5
|
GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. |
| >cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-65 Score=511.20 Aligned_cols=338 Identities=22% Similarity=0.297 Sum_probs=294.2
Q ss_pred eEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHH-HHHhhHhcCCCCCCH
Q 014285 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKV-REACQFLRQSPPTTL 144 (427)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~-~~~~~~l~g~~~~~~ 144 (427)
||++++++.+++|+++|+..+..++..+..++|+|+| +|++||||+. ++... ...+ +.+.|.|+|+++.++
T Consensus 1 ~I~~i~~~~~~~pl~~p~~~~~~~~~~~~~v~V~v~~-~G~~G~Ge~~-----~~~~~--~~~i~~~~~p~liG~d~~~~ 72 (352)
T cd03328 1 AVERVEARAYTVPTDAPEADGTLAWDATTLVLVEVRA-GGRTGLGYTY-----ADAAA--AALVDGLLAPVVEGRDALDP 72 (352)
T ss_pred CeeEEEEEEEEccCCCcccCCccceeeeeEEEEEEEc-CCcEEEeCCC-----ChHHH--HHHHHHHHHHHhcCCCcccH
Confidence 6899999999999999997666666778899999998 7999999863 22111 1123 357899999999999
Q ss_pred HHHHHHHHHHC--C--CChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecC--CCHHHHHHHHHHHhhc
Q 014285 145 NFALDEIARIL--P--GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPA--VSPAEASELASKYCKL 218 (427)
Q Consensus 145 ~~~~~~l~~~~--~--g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~--~~~~~~~~~~~~~~~~ 218 (427)
+.+|+.|++.. . +....++++||||||||++||.+|+|||+||||.++++|+|++++. .+++++.+++++++++
T Consensus 73 ~~l~~~~~~~~~~~~~~g~~~~a~aaiD~AlwDl~gK~~g~Pv~~LLGg~~~~v~~y~s~~~~~~~~e~~~~~a~~~~~~ 152 (352)
T cd03328 73 PAAWEAMQRAVRNAGRPGVAAMAISAVDIALWDLKARLLGLPLARLLGRAHDSVPVYGSGGFTSYDDDRLREQLSGWVAQ 152 (352)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhcCCCCCeEEEEecCCCCCCHHHHHHHHHHHHHC
Confidence 99999997742 1 1223468999999999999999999999999998899999988653 3678899999999999
Q ss_pred CCcEEEEeccCCchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHH
Q 014285 219 GFSTLKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSN 297 (427)
Q Consensus 219 Gf~~iKlKiG~~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~ 297 (427)
||+++|+|+|.+.++|+++++++|+ .++++.|+||||++|++++|+++++.|+++++ .|+|||++++|+++|++|++
T Consensus 153 Gf~~~Kikvg~~~~~d~~~v~~vRe~~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~--~~~EeP~~~~d~~~~~~l~~ 230 (352)
T cd03328 153 GIPRVKMKIGRDPRRDPDRVAAARRAIGPDAELFVDANGAYSRKQALALARAFADEGV--TWFEEPVSSDDLAGLRLVRE 230 (352)
T ss_pred CCCEEEeecCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHhCc--chhhCCCChhhHHHHHHHHh
Confidence 9999999999888999999999999 57899999999999999999999999999997 49999999999999999986
Q ss_pred hhccc--cCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHH
Q 014285 298 FARDT--YGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALH 374 (427)
Q Consensus 298 ~~r~~--~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~h 374 (427)
+ +++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++ .++++|
T Consensus 231 ----~~~~~iPIa~gE~~~~~~~~~~li~~~a~div~~d~~~~GGit~~~~ia~~A~a~gi~~~~h~~------~~a~~h 300 (352)
T cd03328 231 ----RGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQADVTRCGGVTGFLQAAALAAAHHVDLSAHCA------PALHAH 300 (352)
T ss_pred ----hCCCCCCEEecccccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeccCch------HHHHHH
Confidence 6 7799999999999999999999999999999999997 99999999999999999999974 357899
Q ss_pred HHhhcCCcceeccCCC-cccccCCCCCceeeeCcEEecCC-CCCcccccCC
Q 014285 375 LAAGLGCIKYVNLNTP-FLLSEDPFVGGCEVSGAIYNFTN-ARGQGGFLKW 423 (427)
Q Consensus 375 laaal~~~~~~e~~~p-~~~~~~~~~~~~~~~~G~i~~p~-~pGlGve~d~ 423 (427)
++++++|..+.|+..+ ..+.++++.+++.++||++.+|+ +||||+++|+
T Consensus 301 l~aa~~n~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~PGLGv~~d~ 351 (352)
T cd03328 301 VACAVPRLRHLEWFHDHVRIERMLFDGAPDPSGGALRPDLSRPGLGLELRA 351 (352)
T ss_pred HHHhCCCCccceecccchhhhHHhccCCCcccCCEEeCCCCCCccceecCC
Confidence 9999999877775432 23334566677888999999987 7999999997
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-65 Score=511.13 Aligned_cols=343 Identities=20% Similarity=0.250 Sum_probs=298.4
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHH-HHHHHHHHhhHhcCCCCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTK-ALVKVREACQFLRQSPPTT 143 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~-~~~~~~~~~~~l~g~~~~~ 143 (427)
|+|++++++++++|+++|+.++.++.+..+.++|||+|++|++||||+.. ++++..+ ....++.+.|.|+|++. +
T Consensus 1 ~~I~~v~~~~~~~pl~~~~~~~~~~~~~~~~v~V~v~t~~G~~G~Ge~~~---~~~~~~~~~~~~~~~l~p~LiG~~~-~ 76 (355)
T cd03321 1 VLITGLRARAVNVPMQYPVHTSVGTVATAPLVLIDLATDEGVTGHSYLFT---YTPAALKSLKQLLDDMAALLVGEPL-A 76 (355)
T ss_pred CeeEEEEEEEEEccCCCccccccceeccCcEEEEEEEECCCCeEEEeeec---CCCCcHHHHHHHHHHHHHHhCCCCC-C
Confidence 68999999999999999999999999999999999999999999999643 2333322 22234568899999975 5
Q ss_pred HHHHHHHHHHHC--CC--ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecCCCHHHHHHHHHHHhhcC
Q 014285 144 LNFALDEIARIL--PG--SEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLG 219 (427)
Q Consensus 144 ~~~~~~~l~~~~--~g--~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~G 219 (427)
.+.+++.+.+.. .+ .....+++||||||||++||.+|+|||+||||.++++|+|++++..+++++.+++++++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~a~aaid~AlwDl~gk~~g~Pv~~LlGg~~~~v~~y~s~~~~~~~~~~~~a~~~~~~G 156 (355)
T cd03321 77 PAELERALAKRFRLLGYTGLVRMAAAGIDMAAWDALAKVHGLPLAKLLGGNPRPVQAYDSHGLDGAKLATERAVTAAEEG 156 (355)
T ss_pred hHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeeEEEeCCCChHHHHHHHHHHHHHhh
Confidence 666776665432 12 22357899999999999999999999999999988999999988888899999999999999
Q ss_pred CcEEEEeccC-CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHH
Q 014285 220 FSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSN 297 (427)
Q Consensus 220 f~~iKlKiG~-~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~ 297 (427)
|++||+|+|. ++++|++++++||+ .+|++.|++|||++|++++|++++++|+++++ .|||||++++|+++|++|++
T Consensus 157 f~~~KiKvg~~~~~~d~~~v~air~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~ 234 (355)
T cd03321 157 FHAVKTKIGYPTADEDLAVVRSIRQAVGDGVGLMVDYNQSLTVPEAIERGQALDQEGL--TWIEEPTLQHDYEGHARIAS 234 (355)
T ss_pred hHHHhhhcCCCChHhHHHHHHHHHHhhCCCCEEEEeCCCCcCHHHHHHHHHHHHcCCC--CEEECCCCCcCHHHHHHHHH
Confidence 9999999986 68899999999999 47999999999999999999999999999987 49999999999999999986
Q ss_pred hhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHH
Q 014285 298 FARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLA 376 (427)
Q Consensus 298 ~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla 376 (427)
++++||++||++.++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. + +++|++
T Consensus 235 ----~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ia~~A~~~gi~~~~h~~~--~----~~~h~~ 304 (355)
T cd03321 235 ----ALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRASALAEQAGIPMSSHLFQ--E----ISAHLL 304 (355)
T ss_pred ----hcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHHHHHHHHcCCeecccchH--H----HHHHHH
Confidence 78999999999999999999999999999999999997 999999999999999999999842 2 468999
Q ss_pred hhcCCcceeccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 377 AGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 377 aal~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+++++..++|+. .+..+++.+++.++||++.+|++||||+++|+++|
T Consensus 305 aa~~~~~~~e~~---~~~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 351 (355)
T cd03321 305 AVTPTAHWLEYV---DWAGAILEPPLKFEDGNAVIPDEPGNGIIWREKAV 351 (355)
T ss_pred HhCCCcceeecc---chHHHHhcCCcEEECCEEECCCCCcCCcccCHHHH
Confidence 999987776632 12234455678899999999999999999999876
|
MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-63 Score=508.45 Aligned_cols=338 Identities=15% Similarity=0.186 Sum_probs=289.5
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHH-HHHhhHhcCCCCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKV-REACQFLRQSPPTT 143 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~-~~~~~~l~g~~~~~ 143 (427)
|||++|+++.+ . ..++.++|||+|++|++||||+.+. ++.......+ +.++|.|+|+++.+
T Consensus 1 mkI~~v~~~~~-~-------------~~~~~vlVri~td~G~~G~GE~~~~----~~~~~~~~~~~~~l~p~l~G~d~~~ 62 (404)
T PRK15072 1 MKIVDAEVIVT-C-------------PGRNFVTLKITTDDGVTGLGDATLN----GRELAVASYLQDHVCPLLIGRDAHR 62 (404)
T ss_pred CeeEEEEEEEE-C-------------CCCcEEEEEEEeCCCCeEEEecccC----CchHHHHHHHHHHHHHHcCCCChhH
Confidence 79999999643 1 1134689999999999999998532 1112222233 45899999999999
Q ss_pred HHHHHHHHHHHC---CCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhhcC
Q 014285 144 LNFALDEIARIL---PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLG 219 (427)
Q Consensus 144 ~~~~~~~l~~~~---~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~G 219 (427)
++.+|+.|.+.. .|...+.+++||||||||++||.+|+|||+||||. ++++|+|.+....+++++.+++++++++|
T Consensus 63 ~e~~~~~l~~~~~~~~~~~~~~a~aaID~AlwDl~gK~~g~Pl~~LLGG~~r~~v~~y~~~~~~~~~~~~~~a~~~~~~G 142 (404)
T PRK15072 63 IEDIWQYLYRGAYWRRGPVTMSAIAAVDMALWDIKAKAAGMPLYQLLGGASREGVMVYGHANGRDIDELLDDVARHLELG 142 (404)
T ss_pred HHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHhhhhcCCcHHHHcCCCccCceEEEEeCCCCCHHHHHHHHHHHHHcC
Confidence 999999997631 23234568999999999999999999999999996 78999997655567888888999999999
Q ss_pred CcEEEEeccCC-----------------------------------chhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHH
Q 014285 220 FSTLKLNVGRN-----------------------------------ITADFDVLQAIHA-VHPHCSFILDANEGYTSEEA 263 (427)
Q Consensus 220 f~~iKlKiG~~-----------------------------------~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A 263 (427)
|++||+|+|.+ ++.|+++|++||+ .+|++.|++|||++||+++|
T Consensus 143 f~~~KiKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~~G~~~~l~vDaN~~w~~~~A 222 (404)
T PRK15072 143 YKAIRVQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNKFGFDLHLLHDVHHRLTPIEA 222 (404)
T ss_pred CCEEEEecCCCCcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhhhCCCceEEEECCCCCCHHHH
Confidence 99999999731 1345789999999 57999999999999999999
Q ss_pred HHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHH
Q 014285 264 VEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLG 342 (427)
Q Consensus 264 ~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~ 342 (427)
++++++|+++++ .|||||++++|+++|++|++ .+++||++||++.+..+++++++.+++|++|+|++++| +++
T Consensus 223 ~~~~~~l~~~~l--~~iEeP~~~~d~~~~~~L~~----~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~ 296 (404)
T PRK15072 223 ARLGKSLEPYRL--FWLEDPTPAENQEAFRLIRQ----HTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITH 296 (404)
T ss_pred HHHHHhccccCC--cEEECCCCccCHHHHHHHHh----cCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHH
Confidence 999999999997 49999999999999999986 78999999999999999999999999999999999997 999
Q ss_pred HHHHHHHHHHcCCcEEEcccC-chhHHHHHHHHHHhhcCCcceeccCCCcccccCCCCCceeeeCcEEecCCCCCccccc
Q 014285 343 TLQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFL 421 (427)
Q Consensus 343 ~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hlaaal~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~ 421 (427)
+++++++|+++|+++++|++. +|+++.++++|++++++|+.+.|++.+....++++..++.++||++.+|++||||+++
T Consensus 297 ~~kia~lA~~~gi~~~~h~~~~~s~l~~aa~~hlaaa~~~~~~~e~~~~~~~~~~~~~~~~~~~~G~l~vpd~PGLGi~~ 376 (404)
T PRK15072 297 LRRIADFAALYQVRTGSHGPTDLSPVCMAAALHFDLWVPNFGIQEYMGHSEETLEVFPHSYTFEDGYLHPGDAPGLGVDF 376 (404)
T ss_pred HHHHHHHHHHcCCceeeccCcccchHHHHHHHHHHHhccccceeeecccchhhHhhcCCCCeEECCEEECCCCCCCCeeE
Confidence 999999999999999999765 7999999999999999998777766543334566767888999999999999999999
Q ss_pred CCCcC
Q 014285 422 KWTIV 426 (427)
Q Consensus 422 d~~~v 426 (427)
|+++|
T Consensus 377 d~~~l 381 (404)
T PRK15072 377 DEKLA 381 (404)
T ss_pred CHHHH
Confidence 99875
|
|
| >cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-63 Score=503.37 Aligned_cols=342 Identities=17% Similarity=0.236 Sum_probs=295.2
Q ss_pred eEEEEEEEEEEeeccccccc----cceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCC
Q 014285 66 DVQRAEGRELNVALSAPLSL----GLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPP 141 (427)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~----a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~ 141 (427)
||++++++.+++|+++|+.+ +.++.+.++.++|||+|++|++||||+.+. . .......+.+.|.|+|+++
T Consensus 1 ~I~~i~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~Vri~td~G~~G~G~~~~~--~----~~~~~~~~~l~p~liG~d~ 74 (368)
T cd03329 1 KITDVEVTVFEYPTQPVSFDGGHHHPGPAGTRKLALLTIETDEGAKGHAFGGRP--V----TDPALVDRFLKKVLIGQDP 74 (368)
T ss_pred CeEEEEEEEEEeecCcccccccccCCCCCccceEEEEEEEECCCCeEEEecCCc--h----hHHHHHHHHHHHhcCCCCh
Confidence 58999999999999998766 577888899999999999999999996431 1 1111123458899999999
Q ss_pred CCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecC-------CCHHHHHHHHHH
Q 014285 142 TTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPA-------VSPAEASELASK 214 (427)
Q Consensus 142 ~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~-------~~~~~~~~~~~~ 214 (427)
.+++++|+.|.+...+. ..++++||||||||+.||.+|+|||+||||.++++|+|++++. .+++++.+.+++
T Consensus 75 ~~~~~~~~~~~~~~~~~-~~~A~said~AlwDl~gk~~g~Pl~~LLGg~~~~v~~y~s~~~~~~~~~~~~~~~~~~~a~~ 153 (368)
T cd03329 75 LDRERLWQDLWRLQRGL-TDRGLGLVDIALWDLAGKYLGLPVHRLLGGYREKIPAYASTMVGDDLEGLESPEAYADFAEE 153 (368)
T ss_pred hHHHHHHHHHHHHhcCc-chhHHHHHHHHHHHHhhhhcCCcHHHHhhccccceeEEEecCCCcccccCCCHHHHHHHHHH
Confidence 99999999998765553 2358999999999999999999999999998899999987632 378999999999
Q ss_pred HhhcCCcEEEEeccCC--chhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhh
Q 014285 215 YCKLGFSTLKLNVGRN--ITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSG 291 (427)
Q Consensus 215 ~~~~Gf~~iKlKiG~~--~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~ 291 (427)
++++||+.||+|+|.+ +++|++++++||+ .|+++.|+||||++|++++|++++++|+++++. |+|||++++|+++
T Consensus 154 ~~~~Gf~~~Kik~~~~~~~~~di~~i~~vR~~~G~~~~l~vDan~~~~~~~A~~~~~~l~~~~l~--~iEeP~~~~d~~~ 231 (368)
T cd03329 154 CKALGYRAIKLHPWGPGVVRRDLKACLAVREAVGPDMRLMHDGAHWYSRADALRLGRALEELGFF--WYEDPLREASISS 231 (368)
T ss_pred HHHcCCCEEEEecCCchhHHHHHHHHHHHHHHhCCCCeEEEECCCCcCHHHHHHHHHHhhhcCCC--eEeCCCCchhHHH
Confidence 9999999999999753 6889999999999 589999999999999999999999999999874 9999999999999
Q ss_pred HHHHHHhhccccCCeEEecCCCCC-HHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHH
Q 014285 292 LHDVSNFARDTYGISVVADESCRS-LNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLAT 369 (427)
Q Consensus 292 ~~~L~~~~r~~~~iPIa~dE~~~~-~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~ 369 (427)
+++|++ ++++||++||++.+ +.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++ .
T Consensus 232 ~~~l~~----~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~~ia~~a~~~gi~~~~h~~------~ 301 (368)
T cd03329 232 YRWLAE----KLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGITGAMKTAHLAEAFGLDVELHGN------G 301 (368)
T ss_pred HHHHHh----cCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEEEECh------H
Confidence 999986 78999999999999 999999999999999999999997 99999999999999999999984 4
Q ss_pred HHHHHHHhhcCCcceec--cCCCcccccCC-----CCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 370 GFALHLAAGLGCIKYVN--LNTPFLLSEDP-----FVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 370 ~a~~hlaaal~~~~~~e--~~~p~~~~~~~-----~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
++++|++++++|..+.| ++.|.....++ ..+++..+||++.+|++|||||++|+++|
T Consensus 302 ~a~~hlaaa~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 365 (368)
T cd03329 302 AANLHVIAAIRNTRYYERGLLHPSQKYDVYAGYLSVLDDPVDSDGFVHVPKGPGLGVEIDFDYI 365 (368)
T ss_pred HHHHHHHhcCCCceeEEEecccccccccccccchhccCCCcCCCCeEECCCCCcCCccCCHHHH
Confidence 68899999999988776 33443221111 12344568999999999999999999876
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-63 Score=497.12 Aligned_cols=330 Identities=17% Similarity=0.269 Sum_probs=282.3
Q ss_pred eEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCCCHH
Q 014285 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLN 145 (427)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~~~~ 145 (427)
||++|+++.+. ++.++|+|+|++|++||||+.+.. +.+ .....++.+.|.|.|+++.+++
T Consensus 1 ~I~~i~~~~~~----------------~~~~~V~i~~~~G~~G~GE~~~~~--~~~--~~~~~~~~l~p~l~G~d~~~~~ 60 (352)
T cd03325 1 KITKIETFVVP----------------PRWLFVKIETDEGVVGWGEPTVEG--KAR--TVEAAVQELEDYLIGKDPMNIE 60 (352)
T ss_pred CeEEEEEEEEC----------------CCEEEEEEEECCCCEEEeccccCC--cch--HHHHHHHHHHHHhCCCCHHHHH
Confidence 57888886541 235899999999999999997521 111 1223345689999999999999
Q ss_pred HHHHHHHHH--CCC-ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhhcCCc
Q 014285 146 FALDEIARI--LPG-SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGFS 221 (427)
Q Consensus 146 ~~~~~l~~~--~~g-~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~ 221 (427)
.+|+.|... ..+ ...+++++||||||||++||.+|+|||+||||. ++++|+|.+++..+++++.+++++++++||+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~a~aaid~Al~Dl~gk~~g~pv~~LLGg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gf~ 140 (352)
T cd03325 61 HHWQVMYRGGFYRGGPVLMSAISGIDQALWDIKGKVLGVPVHQLLGGQVRDRVRVYSWIGGDRPSDVAEAARARREAGFT 140 (352)
T ss_pred HHHHHHHHhcCcCCcchhhhHHHHHHHHHHHHhhhhcCCcHHHHcCCCccceeEEEEeCCCCCHHHHHHHHHHHHHcCCC
Confidence 999999653 222 224568999999999999999999999999996 7899999988778899898899999999999
Q ss_pred EEEEeccC---------CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhh
Q 014285 222 TLKLNVGR---------NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSG 291 (427)
Q Consensus 222 ~iKlKiG~---------~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~ 291 (427)
+||+|+|. ++++|+++++++|+ .+|++.||||||++||+++|+++++.|+++++. |||||++++|+++
T Consensus 141 ~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~--~iEeP~~~~d~~~ 218 (352)
T cd03325 141 AVKMNATEELQWIDTSKKVDAAVERVAALREAVGPDIDIGVDFHGRVSKPMAKDLAKELEPYRLL--FIEEPVLPENVEA 218 (352)
T ss_pred EEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHhccccCCc--EEECCCCccCHHH
Confidence 99999984 46789999999999 579999999999999999999999999999974 9999999999999
Q ss_pred HHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHH
Q 014285 292 LHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATG 370 (427)
Q Consensus 292 ~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~ 370 (427)
|++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++ +|+++++
T Consensus 219 ~~~L~~----~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~~-~s~i~~~ 293 (352)
T cd03325 219 LAEIAA----RTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAGGITELKKIAAMAEAYDVALAPHCP-LGPIALA 293 (352)
T ss_pred HHHHHH----hCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCcEeccCC-CChHHHH
Confidence 999986 78999999999999999999999999999999999997 99999999999999999999996 8999999
Q ss_pred HHHHHHhhcCCcceec--cCCCccccc----CCCC-CceeeeCcEEecCCCCCcccccC
Q 014285 371 FALHLAAGLGCIKYVN--LNTPFLLSE----DPFV-GGCEVSGAIYNFTNARGQGGFLK 422 (427)
Q Consensus 371 a~~hlaaal~~~~~~e--~~~p~~~~~----~~~~-~~~~~~~G~i~~p~~pGlGve~d 422 (427)
+++|+++++++..+.| ++.++...+ +.+. .+++++||++.+|++||||+++|
T Consensus 294 a~~hlaa~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~G~l~vp~~pGLGi~~d 352 (352)
T cd03325 294 ASLHVDASTPNFLIQEQSLGIHYNEGDDLLDYLVDPEVFDMENGYVKLPTGPGLGIEID 352 (352)
T ss_pred HHHHHHHhcccHHhhhcccccCcccchhhhhhhccCCCCeeeCCEEECCCCCccCeeeC
Confidence 9999999998865543 222222111 1233 57889999999999999999987
|
D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK14017 galactonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-63 Score=503.28 Aligned_cols=335 Identities=19% Similarity=0.245 Sum_probs=284.8
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCCCH
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTL 144 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~~~ 144 (427)
|||++++++.+. + ..++|||+|++|++||||+...+ + .......++.+.|.|+|+++.++
T Consensus 1 mkI~~i~~~~~~-----~-----------~~vlV~v~t~dG~~G~GE~~~~~--~--~~~~~~~~~~~~p~l~G~d~~~~ 60 (382)
T PRK14017 1 MKITKLETFRVP-----P-----------RWLFLKIETDEGIVGWGEPVVEG--R--ARTVEAAVHELADYLIGKDPRRI 60 (382)
T ss_pred CeEEEEEEEEEC-----C-----------CEEEEEEEECCCCeEEeccccCC--c--hHHHHHHHHHHHHHhCCCCHHHH
Confidence 799999997652 1 13889999999999999986421 1 11222234568999999999999
Q ss_pred HHHHHHHHHH--CCC-ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhhcCC
Q 014285 145 NFALDEIARI--LPG-SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGF 220 (427)
Q Consensus 145 ~~~~~~l~~~--~~g-~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf 220 (427)
+.+|+.|+.. ..+ ...+++++|||||||||+||.+|+|||+||||. ++++|+|.+++..+++++.+++++++++||
T Consensus 61 ~~~~~~l~~~~~~~~~~~~~~A~aaid~AlwDl~gK~~g~Pv~~LLGg~~r~~i~~~~~~~~~~~~~~~~~a~~~~~~Gf 140 (382)
T PRK14017 61 EDHWQVMYRGGFYRGGPILMSAIAGIDQALWDIKGKALGVPVHELLGGLVRDRIRVYSWIGGDRPADVAEAARARVERGF 140 (382)
T ss_pred HHHHHHHHHhcccCCchHHhhHHHHHHHHHHHHhhhhcCCcHHHHcCCCccceeeEeEeCCCCCHHHHHHHHHHHHHcCC
Confidence 9999999653 222 223568999999999999999999999999996 889999988777789999999999999999
Q ss_pred cEEEEeccC---------CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChh
Q 014285 221 STLKLNVGR---------NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWS 290 (427)
Q Consensus 221 ~~iKlKiG~---------~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~ 290 (427)
+.||+|+|. ++++|+++++++|+ .+|++.|+||||++|+.++|++++++|+++++. |||||++++|++
T Consensus 141 ~~~KiKv~~~~~~~~~~~~~~~d~~~i~avr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~--~iEeP~~~~d~~ 218 (382)
T PRK14017 141 TAVKMNGTEELQYIDSPRKVDAAVARVAAVREAVGPEIGIGVDFHGRVHKPMAKVLAKELEPYRPM--FIEEPVLPENAE 218 (382)
T ss_pred CEEEEcCcCCccccccHHHHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHhhcccCCC--eEECCCCcCCHH
Confidence 999999963 35789999999999 579999999999999999999999999999974 999999999999
Q ss_pred hHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHH
Q 014285 291 GLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLAT 369 (427)
Q Consensus 291 ~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~ 369 (427)
+|++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.+ +|++
T Consensus 219 ~~~~L~~----~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~~-~i~~ 293 (382)
T PRK14017 219 ALPEIAA----QTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCPLG-PIAL 293 (382)
T ss_pred HHHHHHh----cCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCCCC-HHHH
Confidence 9999986 78999999999999999999999999999999999997 9999999999999999999999865 8999
Q ss_pred HHHHHHHhhcCCcceecc--CCCccccc---CCCC--CceeeeCcEEecCCCCCcccccCCCcC
Q 014285 370 GFALHLAAGLGCIKYVNL--NTPFLLSE---DPFV--GGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 370 ~a~~hlaaal~~~~~~e~--~~p~~~~~---~~~~--~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
++++|+++++++..+.+. +..+...+ +.+. .++.++||++.+|++|||||++|+++|
T Consensus 294 aa~~hl~aa~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~dG~~~vp~~PGLGv~~d~~~l 357 (382)
T PRK14017 294 AACLQVDAVSPNAFIQEQSLGIHYNQGADLLDYVKNKEVFAYEDGFVAIPTGPGLGIEIDEAKV 357 (382)
T ss_pred HHHHHHHHhCccceeeeecccccccchhhHHHhcccCCCCcccCCeEECCCCCcCCcCCCHHHH
Confidence 999999999988655442 12111111 1122 467889999999999999999999876
|
|
| >cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=495.60 Aligned_cols=340 Identities=22% Similarity=0.340 Sum_probs=302.0
Q ss_pred eEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHH-HhhHhcCCCCCCH
Q 014285 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVRE-ACQFLRQSPPTTL 144 (427)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~-~~~~l~g~~~~~~ 144 (427)
||++++++.+++|++.| .++.+.++.++|||+|++|++||||+.+.+. . ......+++ ++|.|.|+++.++
T Consensus 1 kI~~i~~~~~~~p~~~~----~~~~~~~~~~~V~v~~~~G~~G~GE~~~~~~--~--~~~~~~l~~~~~p~l~G~~~~~~ 72 (357)
T cd03316 1 KITDVETFVLRVPLPEP----GGAVTWRNLVLVRVTTDDGITGWGEAYPGGR--P--SAVAAAIEDLLAPLLIGRDPLDI 72 (357)
T ss_pred CeeEEEEEEEecCCccc----ccccccceEEEEEEEeCCCCEEEEeccCCCC--c--hHHHHHHHHHHHHHccCCChHHH
Confidence 58999999999999998 5667788999999999999999999987542 1 122333454 8999999999999
Q ss_pred HHHHHHHHHHCCCC----hhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCC--CHHHHHHHHHHHhh
Q 014285 145 NFALDEIARILPGS----EFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAV--SPAEASELASKYCK 217 (427)
Q Consensus 145 ~~~~~~l~~~~~g~----~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~--~~~~~~~~~~~~~~ 217 (427)
+.+|+.|.+...++ ..+++++|||+||||+.||..|+|||+||||. ++++|+|.+++.. +++++.+.++++++
T Consensus 73 ~~~~~~l~~~~~~~~~~~~~~~a~~aid~Al~Dl~gk~~g~pl~~llGg~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~ 152 (357)
T cd03316 73 ERLWEKLYRRLFWRGRGGVAMAAISAVDIALWDIKGKAAGVPVYKLLGGKVRDRVRVYASGGGYDDSPEELAEEAKRAVA 152 (357)
T ss_pred HHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHhcccccCCcHhhccCCccCCceeeEEecCCCCCCHHHHHHHHHHHHH
Confidence 99999998754322 34678999999999999999999999999998 8999999987655 68889999999999
Q ss_pred cCCcEEEEeccCC------chhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChh
Q 014285 218 LGFSTLKLNVGRN------ITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWS 290 (427)
Q Consensus 218 ~Gf~~iKlKiG~~------~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~ 290 (427)
+||+.||+|+|.+ ++.|++++++||+ .++++.|++|+|++|++++|+++++.|+++++ .|||||+++++++
T Consensus 153 ~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~~~~ 230 (357)
T cd03316 153 EGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYDL--FWFEEPVPPDDLE 230 (357)
T ss_pred cCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhCccCC--CeEcCCCCccCHH
Confidence 9999999999974 6899999999999 57899999999999999999999999999987 4999999999999
Q ss_pred hHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHH
Q 014285 291 GLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLAT 369 (427)
Q Consensus 291 ~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~ 369 (427)
++++|++ ++++||++||++.++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.+ +|+.
T Consensus 231 ~~~~l~~----~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~~~~-~i~~ 305 (357)
T cd03316 231 GLARLRQ----ATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHGAGG-PIGL 305 (357)
T ss_pred HHHHHHH----hCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEeccCCCC-HHHH
Confidence 9999986 68999999999999999999999999999999999997 9999999999999999999999866 9999
Q ss_pred HHHHHHHhhcCCcceeccCCCc-ccccCCCCCceeeeCcEEecCCCCCcccc
Q 014285 370 GFALHLAAGLGCIKYVNLNTPF-LLSEDPFVGGCEVSGAIYNFTNARGQGGF 420 (427)
Q Consensus 370 ~a~~hlaaal~~~~~~e~~~p~-~~~~~~~~~~~~~~~G~i~~p~~pGlGve 420 (427)
++++|+++++++..+.|++.+. ....+++..++.++||++.+|++||||+|
T Consensus 306 aa~~hla~a~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ 357 (357)
T cd03316 306 AASLHLAAALPNFGILEYHLDDLPLREDLFKNPPEIEDGYVTVPDRPGLGVE 357 (357)
T ss_pred HHHHHHHHhCcChheEEeecccchhhHhhccCCCeeeCCEEECCCCCCCCCC
Confidence 9999999999998888876553 23445667788999999999999999986
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD). |
| >cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-62 Score=494.08 Aligned_cols=334 Identities=21% Similarity=0.290 Sum_probs=284.1
Q ss_pred EEEEEEEeeccccccccceeEEeeeEEEEEEEEcC---C--ceEEEEeecCCCCCcchHHHHHHH-HHHhhHhcCCCCC-
Q 014285 70 AEGRELNVALSAPLSLGLSSVENVENVAIRVELSN---G--CVGWGEVAVVPLVTGDQTKALVKV-REACQFLRQSPPT- 142 (427)
Q Consensus 70 i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~---G--~~G~GE~~~~~~~s~~~~~~~~~~-~~~~~~l~g~~~~- 142 (427)
++++.+++|+++||.++.++++.++.++|+|+||+ | ++||||+.. +. .... ..+ +.+.|.|+|++|.
T Consensus 3 ~~~~~~~~Pl~~p~~~a~~~~~~~~~~lV~v~td~~~~G~~~~G~Ge~~~-~~----~~~~-~~i~~~~~p~LiG~dp~~ 76 (385)
T cd03326 3 VAIREKAIPLSSPIANAYVDFSGLTTSLVAVVTDVVRDGRPVVGYGFDSI-GR----YAQG-GLLRERFIPRLLAAAPDS 76 (385)
T ss_pred eeeEEEecCCCCCccCceeeeeccEEEEEEEEeccccCCCceeEEEeccC-Cc----hhHH-HHHHHHHHHHhcCCChHH
Confidence 35678889999999999999999999999999998 9 999999862 11 1111 113 3478999999998
Q ss_pred ---------CHHHHHHHHHHHC--CCC-hhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC------CCceeeeeeec---
Q 014285 143 ---------TLNFALDEIARIL--PGS-EFASVRAGVEMALIDAVANSIDIPLWRLFGGA------SNSLSTAITIP--- 201 (427)
Q Consensus 143 ---------~~~~~~~~l~~~~--~g~-~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~------~~~ip~~~~i~--- 201 (427)
+++.+|+.|.... .+. ....+++||||||||++||.+|+|||+||||. ++++|+|.+.+
T Consensus 77 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~saID~ALwDl~gK~~g~Pv~~LLGG~~~~~~~~~~v~~y~~~~~~~ 156 (385)
T cd03326 77 LLDDAGGNLDPARAWAAMMRNEKPGGHGERAVAVGALDMAVWDAVAKIAGLPLYRLLARRYGRGQADPRVPVYAAGGYYY 156 (385)
T ss_pred hhhcccccCCHHHHHHHHHhcCccCCCCHHHHHHHHHHHHHHHHhHHHcCCcHHHHcCCcccCCCCCCeEEEEEecCCCC
Confidence 4499999997631 122 23468999999999999999999999999985 47899998754
Q ss_pred -CCCHHHHHHHHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCc
Q 014285 202 -AVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPV 278 (427)
Q Consensus 202 -~~~~~~~~~~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~ 278 (427)
..+++++.+++++++++||+.||+|+|. ++++|+++++++|+ ++|++.|+||||++||+++|+++++.|+++++ .
T Consensus 157 ~~~~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~di~~v~avRe~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~--~ 234 (385)
T cd03326 157 PGDDLGRLRDEMRRYLDRGYTVVKIKIGGAPLDEDLRRIEAALDVLGDGARLAVDANGRFDLETAIAYAKALAPYGL--R 234 (385)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhCcCC--C
Confidence 3467888899999999999999999986 67899999999999 58999999999999999999999999999997 4
Q ss_pred eEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCC----cEEEeCCCCcc-HHHHHHHHHHHHHc
Q 014285 279 LFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLA----SVVNIKLAKFG-VLGTLQIIKATRKS 353 (427)
Q Consensus 279 ~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~----~~i~lk~~~~G-i~~~~~~~~~A~~~ 353 (427)
|||||++++|++++++|++ ++++||++||++++..+++++++.+++ |++|+|++++| ++++++++++|+++
T Consensus 235 ~iEeP~~~~d~~~~~~L~~----~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~d~~~~GGit~~~kia~lA~a~ 310 (385)
T cd03326 235 WYEEPGDPLDYALQAELAD----HYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQFDPGLSYGLPEYLRMLDVLEAH 310 (385)
T ss_pred EEECCCCccCHHHHHHHHh----hCCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEeCchhhCCHHHHHHHHHHHHHc
Confidence 9999999999999999986 789999999999999999999999887 99999999997 99999999999999
Q ss_pred CCc---EEEcccCchhHHHHHHHHHHhhcCCcceec----cCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 354 GLH---LMIDGMIETRLATGFALHLAAGLGCIKYVN----LNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 354 gi~---~~~~s~~es~ig~~a~~hlaaal~~~~~~e----~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
|++ +++|+ +..+++|+++++++. +++ ++.+. +.+.+++.++||++.+|++||||+|+|+++|
T Consensus 311 gi~~~~~~pH~------~~~a~lhl~aa~~~~-~~e~~~~~~~~~----~~~~~~~~~~~G~i~~p~~PGlGield~~~~ 379 (385)
T cd03326 311 GWSRRRFFPHG------GHLMSLHIAAGLGLG-GNESYPDVFQPF----GGFADGCKVENGYVRLPDAPGIGFEGKAELA 379 (385)
T ss_pred CCCCceeecch------HHHHHHHHHhcCCCc-eeEEeccccchh----hhcCCCCceeCCEEECCCCCCCCcccCHHHH
Confidence 998 77775 346788999988752 222 22222 2234567789999999999999999999875
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >cd03322 rpsA The starvation sensing protein RpsA from E | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-62 Score=489.32 Aligned_cols=330 Identities=15% Similarity=0.179 Sum_probs=281.7
Q ss_pred eEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHH-HHhhHhcCCCCCCH
Q 014285 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVR-EACQFLRQSPPTTL 144 (427)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~-~~~~~l~g~~~~~~ 144 (427)
||++|+.+.. .| . ++.++|||+|++|++||||+.+. +........++ .+.|.|+|+++.++
T Consensus 1 kI~~ie~~~~-~~----~---------~~~vlV~v~td~G~~G~GE~~~~----~~~~~~~~~i~~~l~p~l~G~d~~~~ 62 (361)
T cd03322 1 KITAIEVIVT-CP----G---------RNFVTLKITTDQGVTGLGDATLN----GRELAVKAYLREHLKPLLIGRDANRI 62 (361)
T ss_pred CeEEEEEEEE-CC----C---------CCEEEEEEEeCCCCeEEEecccC----CCHHHHHHHHHHHHHHHcCCCChhHH
Confidence 6889998544 22 1 34689999999999999998632 11112222343 48899999999999
Q ss_pred HHHHHHHHHH--CC-CChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhhcCC
Q 014285 145 NFALDEIARI--LP-GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGF 220 (427)
Q Consensus 145 ~~~~~~l~~~--~~-g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf 220 (427)
+.+|+.|+.. +. +....++++||||||||++||.+|+|||+||||. ++++|+|.+.+..+++++.+++++++++||
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~a~aaid~AlwDl~gk~~g~Pl~~LLGg~~r~~v~~ya~~~~~~~~~~~~~a~~~~~~Gf 142 (361)
T cd03322 63 EDIWQYLYRGAYWRRGPVTMNAIAAVDMALWDIKGKAAGMPLYQLLGGKSRDGIMVYSHASGRDIPELLEAVERHLAQGY 142 (361)
T ss_pred HHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHhHhhcCCcHHHHcCCCccCeeeEEEeCCCCCHHHHHHHHHHHHHcCC
Confidence 9999999763 11 2223468999999999999999999999999996 789999987666678888899999999999
Q ss_pred cEEEEeccCCchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhh
Q 014285 221 STLKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFA 299 (427)
Q Consensus 221 ~~iKlKiG~~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~ 299 (427)
+.||+|+ +++++++|+ .++++.|++|||++|++++|++++++|+++++. |+|||++++|+++|++|++
T Consensus 143 ~~~KiKv-------~~~v~avre~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~l~--~iEeP~~~~d~~~~~~L~~-- 211 (361)
T cd03322 143 RAIRVQL-------PKLFEAVREKFGFEFHLLHDVHHRLTPNQAARFGKDVEPYRLF--WMEDPTPAENQEAFRLIRQ-- 211 (361)
T ss_pred CeEeeCH-------HHHHHHHHhccCCCceEEEECCCCCCHHHHHHHHHHhhhcCCC--EEECCCCcccHHHHHHHHh--
Confidence 9999998 789999999 578999999999999999999999999999974 9999999999999999986
Q ss_pred ccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccC-chhHHHHHHHHHHh
Q 014285 300 RDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAA 377 (427)
Q Consensus 300 r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hlaa 377 (427)
++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. +|++++++++|+++
T Consensus 212 --~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~~~s~i~~aa~~~laa 289 (361)
T cd03322 212 --HTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGPTDLSPVGMAAALHLDL 289 (361)
T ss_pred --cCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCCCCcchHHHHHHHHHHh
Confidence 78999999999999999999999999999999999997 999999999999999999999887 69999999999999
Q ss_pred hcCCcceeccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 378 GLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 378 al~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
++++..+.++........+++..++.++||++.+|++||||+++|++++
T Consensus 290 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~dG~i~~p~~PGlGi~~d~~~l 338 (361)
T cd03322 290 WVPNFGIQEYMRHAEETLEVFPHSVRFEDGYLHPGEEPGLGVEIDEKAA 338 (361)
T ss_pred hcCcceEEEeccccchHHHhcCCCCeecCCeEeCCCCCccCceECHHHH
Confidence 9888665554321112235666778899999999999999999999875
|
coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad. |
| >cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-61 Score=484.36 Aligned_cols=309 Identities=17% Similarity=0.263 Sum_probs=266.5
Q ss_pred EEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHH-HHHhhHhcCCCCCCHHHHHHHHHHHC--C--CChhhhHHHHHHH
Q 014285 95 NVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKV-REACQFLRQSPPTTLNFALDEIARIL--P--GSEFASVRAGVEM 169 (427)
Q Consensus 95 ~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~-~~~~~~l~g~~~~~~~~~~~~l~~~~--~--g~~~~~a~~aie~ 169 (427)
.++|||+||+|++||||+.+. . .....+ +.+.|.|+|+++.+++.+|+.|++.. . +....++++||||
T Consensus 11 ~v~V~i~td~Gi~G~GE~~~~----~---~~~~~i~~~l~p~liG~dp~~~~~~~~~l~~~~~~~~~~~~~~~a~said~ 83 (341)
T cd03327 11 WLFVEIETDDGTVGYANTTGG----P---VACWIVDQHLARFLIGKDPSDIEKLWDQMYRATLAYGRKGIAMAAISAVDL 83 (341)
T ss_pred EEEEEEEECCCCeEEecCCCc----h---HHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhccccCCccHHHhHHHHHHH
Confidence 589999999999999998531 1 112223 45889999999999999999997642 1 1223468999999
Q ss_pred HHHHHHHhhCCCChhhhhCCC-CCceeeeeee-cCCCHHHHHHHHHHHhhcCCcEEEEeccC-------CchhhHHHHHH
Q 014285 170 ALIDAVANSIDIPLWRLFGGA-SNSLSTAITI-PAVSPAEASELASKYCKLGFSTLKLNVGR-------NITADFDVLQA 240 (427)
Q Consensus 170 Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i-~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~-------~~~~d~~~l~~ 240 (427)
||||++||.+|+|||+||||. ++++|+|++. +..+++++.+++++++++||++||+|+|. ++++|++++++
T Consensus 84 AlwDl~gK~~g~Pv~~LLGG~~r~~i~~y~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v~a 163 (341)
T cd03327 84 ALWDLLGKIRGEPVYKLLGGRTRDKIPAYASGLYPTDLDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELVRA 163 (341)
T ss_pred HHHHhcccccCCCHHHHcCCCcCCceEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHHHH
Confidence 999999999999999999996 7899999874 35688889999999999999999999973 35789999999
Q ss_pred HHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHH
Q 014285 241 IHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDV 319 (427)
Q Consensus 241 ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~ 319 (427)
||+ .+|++.|++|||++|++++|++++++|+++++ .|||||++++|+++|++|++ ++++||++||++.+..++
T Consensus 164 vr~~~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~~--~~iEeP~~~~d~~~~~~l~~----~~~~pIa~gE~~~~~~~~ 237 (341)
T cd03327 164 IREAVGYDVDLMLDCYMSWNLNYAIKMARALEKYEL--RWIEEPLIPDDIEGYAELKK----ATGIPISTGEHEYTVYGF 237 (341)
T ss_pred HHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhhcCC--ccccCCCCccCHHHHHHHHh----cCCCCeEeccCccCHHHH
Confidence 999 58999999999999999999999999999997 49999999999999999986 799999999999999999
Q ss_pred HHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcceeccCC--Ccc----
Q 014285 320 QKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNT--PFL---- 392 (427)
Q Consensus 320 ~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~~~--p~~---- 392 (427)
+++++.+++|++|+|++++| ++++++++++|+++|+++++|+. .++++|++++++|..+.|+.. +..
T Consensus 238 ~~~i~~~a~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h~~------~~a~~hlaaa~~~~~~~e~~~~~~~~~~~~ 311 (341)
T cd03327 238 KRLLEGRAVDILQPDVNWVGGITELKKIAALAEAYGVPVVPHAS------QIYNYHFIMSEPNSPFAEYLPNSPDEVGNP 311 (341)
T ss_pred HHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeccccH------HHHHHHHHHhCcCceeEEecccccccccch
Confidence 99999999999999999997 99999999999999999999972 458899999999977766432 111
Q ss_pred cccCCCCCceeeeCcEEecCCCCCcccccC
Q 014285 393 LSEDPFVGGCEVSGAIYNFTNARGQGGFLK 422 (427)
Q Consensus 393 ~~~~~~~~~~~~~~G~i~~p~~pGlGve~d 422 (427)
+..+++.+++.++||++.+|++||||+|+|
T Consensus 312 ~~~~~~~~~~~~~~G~~~~p~~PGLGve~d 341 (341)
T cd03327 312 LFYYIFLNEPVPVNGYFDLSDKPGFGLELN 341 (341)
T ss_pred hHHHhccCCCcccCCeEECCCCCccCeecC
Confidence 124555667788999999999999999987
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-61 Score=489.99 Aligned_cols=343 Identities=18% Similarity=0.241 Sum_probs=278.2
Q ss_pred eeEEEEEEEEEEeeccccccccce--eEEeeeEEEEEEEEcC-CceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLS--SVENVENVAIRVELSN-GCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPP 141 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~--~~~~~~~vlV~v~t~~-G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~ 141 (427)
+||++++++.+++|+++|+..+.+ +....+.++|||+||+ |++||||+.+... +.+. ....++.+.|.|+|+++
T Consensus 1 ~kI~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~V~i~td~~G~~G~Ge~~~~~~-~~~~--~~~~~~~lap~liG~d~ 77 (415)
T cd03324 1 IKITALEVRDVRFPTSLELDGSDAMNPDPDYSAAYVVLRTDAAGLKGHGLTFTIGR-GNEI--VCAAIEALAHLVVGRDL 77 (415)
T ss_pred CeEEEEEEEEEEeecCccCCCcccccCCCCceEEEEEEEecCCCCEEEEEeccCCC-chHH--HHHHHHHHHHHhCCCCH
Confidence 589999999999999999865433 3344578999999999 9999999864211 1111 11223568999999999
Q ss_pred CCHHHHHHHHHHHCC--------C---ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-C------------------
Q 014285 142 TTLNFALDEIARILP--------G---SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-S------------------ 191 (427)
Q Consensus 142 ~~~~~~~~~l~~~~~--------g---~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~------------------ 191 (427)
.+++.+++.+.+.+. + .....+++||||||||++||.+|+|||+||||. +
T Consensus 78 ~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~saiD~AlwDl~gK~~g~Pv~~LLGg~~~~~~~~~~~~~~~~~~~~~ 157 (415)
T cd03324 78 ESIVADMGKFWRRLTSDSQLRWIGPEKGVIHLATAAVVNAVWDLWAKAEGKPLWKLLVDMTPEELVSCIDFRYITDALTP 157 (415)
T ss_pred HHHHHHHHHHHHHhhccccceecCCcccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhcCCCHHHhhhcccceeeccccCH
Confidence 988554444433221 1 122468999999999999999999999999993 2
Q ss_pred -----------------------Cceeeeeee-c--CCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHH-h
Q 014285 192 -----------------------NSLSTAITI-P--AVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHA-V 244 (427)
Q Consensus 192 -----------------------~~ip~~~~i-~--~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~-~ 244 (427)
+++|+|.+. + ..+++++.+++++++++||++||+|+|.++++|+++++++|+ +
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~d~~~v~avRe~v 237 (415)
T cd03324 158 EEALEILRRGQPGKAAREADLLAEGYPAYTTSAGWLGYSDEKLRRLCKEALAQGFTHFKLKVGADLEDDIRRCRLAREVI 237 (415)
T ss_pred HHHHHHhhhcccchhhhhhhhhccCCceeecCCcccCCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHHhc
Confidence 578888642 2 247788999999999999999999999989999999999999 5
Q ss_pred CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhcccc---CCeEEecCCCCCHHHHHH
Q 014285 245 HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTY---GISVVADESCRSLNDVQK 321 (427)
Q Consensus 245 ~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~---~iPIa~dE~~~~~~~~~~ 321 (427)
+|++.|+||||++|++++|++++++|+++++ .|||||++++|+++|++|++ ++ ++||++||++.+.+++++
T Consensus 238 G~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l--~~iEEP~~~~d~~~~~~L~~----~~~~~~iPIa~gEs~~~~~~~~~ 311 (415)
T cd03324 238 GPDNKLMIDANQRWDVPEAIEWVKQLAEFKP--WWIEEPTSPDDILGHAAIRK----ALAPLPIGVATGEHCQNRVVFKQ 311 (415)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHhhccCC--CEEECCCCCCcHHHHHHHHH----hcccCCCceecCCccCCHHHHHH
Confidence 8999999999999999999999999999997 49999999999999999986 45 699999999999999999
Q ss_pred HHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCc--------ceeccCCCcc
Q 014285 322 VMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCI--------KYVNLNTPFL 392 (427)
Q Consensus 322 ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~--------~~~e~~~p~~ 392 (427)
+++.+++|++|+|++++| ++++++++++|+++|+++++|+ ++++.++++|.++.+... .+.|+.. .
T Consensus 312 ll~~~a~dil~~d~~~~GGit~~~kia~lA~a~gi~~~pH~---s~~~~~a~~~~~~~~~~~~~~~~~~~~~~e~~~--~ 386 (415)
T cd03324 312 LLQAGAIDVVQIDSCRLGGVNENLAVLLMAAKFGVPVCPHA---GGVGLCELVQHLSMIDYICVSGSKEGRVIEYVD--H 386 (415)
T ss_pred HHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEcC---CHHHHHHHHHHhhcccccccCCccccchhhhHH--H
Confidence 999999999999999997 9999999999999999999996 677777776644331110 1222211 1
Q ss_pred cccCCCCCceeeeCcEEecCCCCCcccccC
Q 014285 393 LSEDPFVGGCEVSGAIYNFTNARGQGGFLK 422 (427)
Q Consensus 393 ~~~~~~~~~~~~~~G~i~~p~~pGlGve~d 422 (427)
..+++.+++.++||++.+|++||||+|++
T Consensus 387 -~~~~~~~~~~~~dG~l~lp~~PGLGve~~ 415 (415)
T cd03324 387 -LHEHFVYPVVIQNGAYMPPTDPGYSIEMK 415 (415)
T ss_pred -HHhhccCCCeeeCCEEECCCCCccCeeeC
Confidence 13345677889999999999999999974
|
rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >TIGR03247 glucar-dehydr glucarate dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-60 Score=486.54 Aligned_cols=346 Identities=16% Similarity=0.220 Sum_probs=285.6
Q ss_pred eeEEEEEEEEEEeeccccccccceeE-EeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSV-ENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTT 143 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~-~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~~ 143 (427)
..||++++.++... ..|+....|.+ +..+.++|+|+||+|++||||+.+ ++.. ...++.++|.|+|+++.+
T Consensus 4 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iV~v~Td~Gi~G~GEa~~-----~~~~--~~~l~~lap~LiG~dp~~ 75 (441)
T TIGR03247 4 PVVTEMRVIPVAGH-DSMLLNLSGAHAPFFTRNIVILTDSSGNTGVGEVPG-----GEKI--RATLEDARPLVVGKPLGE 75 (441)
T ss_pred CEEeEEEEEeeccc-cchhccccccCCCcceEEEEEEEECCCCeEEEeCCC-----cHHH--HHHHHHHHHHhcCCCHHH
Confidence 56788887776332 22333333322 367889999999999999999853 1111 122356899999999999
Q ss_pred HHHHHHHHHHHCC-------CCh------hhhHHHHHHHHHHHHHHhhCCCChhhhhC-CC-CCceeeeeee---c----
Q 014285 144 LNFALDEIARILP-------GSE------FASVRAGVEMALIDAVANSIDIPLWRLFG-GA-SNSLSTAITI---P---- 201 (427)
Q Consensus 144 ~~~~~~~l~~~~~-------g~~------~~~a~~aie~Al~Dl~gk~~g~Pl~~Llg-g~-~~~ip~~~~i---~---- 201 (427)
++.+|+.|.+... +.. ..++++||||||||++||.+|+|||+||| |. ++++|+|.+. +
T Consensus 76 ~e~i~~~m~~~~~~~~~~~~g~~~~~~~~~~~A~aAIDiALWDl~gK~~g~Pl~~LLGgg~~r~~vp~y~~~~~ig~~~~ 155 (441)
T TIGR03247 76 YQNVLNDVRATFADRDAGGRGLQTFDLRTTIHAVTAIESALLDLLGQHLGVPVAALLGEGQQRDEVEMLGYLFFIGDRKR 155 (441)
T ss_pred HHHHHHHHHHHhhcccccccCcccccchhHHHHHHHHHHHHHHHhhhHcCCCHHHHhCCCCccceEEEeeeeeecccccc
Confidence 9999999976431 211 24689999999999999999999999999 64 7899998541 1
Q ss_pred ----------------------CCCHHHHHHHHHHHhh-cCCcEEEEeccC-CchhhHHHHHHHHHhCCCcEEEEeCCCC
Q 014285 202 ----------------------AVSPAEASELASKYCK-LGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEG 257 (427)
Q Consensus 202 ----------------------~~~~~~~~~~~~~~~~-~Gf~~iKlKiG~-~~~~d~~~l~~ir~~~~~~~L~vDAN~~ 257 (427)
..+++++.++++++++ +||++||+|+|. +.++|+++++++|+..+++.|+||||++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~a~KiKvG~~~~~~Di~~v~avRea~~d~~L~vDAN~~ 235 (441)
T TIGR03247 156 TSLPYRSGPQDDDDWFRLRHEEALTPEAVVRLAEAAYDRYGFRDFKLKGGVLRGEEEIEAVTALAKRFPQARITLDPNGA 235 (441)
T ss_pred ccccccccccccccccccccccCCCHHHHHHHHHHHHHhcCCCEEEEecCCCChHHHHHHHHHHHHhCCCCeEEEECCCC
Confidence 1367888888888776 599999999996 5689999999999976999999999999
Q ss_pred CCHHHHHHHHHHhhhCCCCCceEeCCCCCCC----hhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEe
Q 014285 258 YTSEEAVEVLGKLNDMGVIPVLFEQPVHRDD----WSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (427)
Q Consensus 258 ~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d----~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~l 333 (427)
|++++|++++++|+++ + .|||||++++| +++|++|++ ++++||++||++++..+++++++.+++|++|+
T Consensus 236 wt~~~Ai~~~~~Le~~-~--~~iEePv~~~d~~~~~~~la~Lr~----~~~iPIa~dEs~~~~~~~~~li~~~avdi~~~ 308 (441)
T TIGR03247 236 WSLDEAIALCKDLKGV-L--AYAEDPCGAEQGYSGREVMAEFRR----ATGLPTATNMIATDWRQMGHALQLQAVDIPLA 308 (441)
T ss_pred CCHHHHHHHHHHhhhh-h--ceEeCCCCcccccchHHHHHHHHH----hCCCCEEcCCccCCHHHHHHHHHhCCCCEEec
Confidence 9999999999999998 7 49999999998 899999986 79999999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcceeccCCCcccc--cCCCCCceeeeCcEEec
Q 014285 334 KLAKFGVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLS--EDPFVGGCEVSGAIYNF 411 (427)
Q Consensus 334 k~~~~Gi~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~~~p~~~~--~~~~~~~~~~~~G~i~~ 411 (427)
|+.+.|++++++++++|+++|+++++|+..+++|+.++++|+++++++.. .+++.++... ++++.+++.++||++.+
T Consensus 309 d~~~gGIt~~~kIa~lA~a~Gi~v~~h~~~~~~i~~aa~~hlaaa~p~~~-~~~d~~~~~~~~~~l~~~p~~~~dG~i~v 387 (441)
T TIGR03247 309 DPHFWTMQGSVRVAQMCHDWGLTWGSHSNNHFDISLAMFTHVAAAAPGKI-TAIDTHWIWQDGQRLTKEPLEIKGGKIQV 387 (441)
T ss_pred cCCcchHHHHHHHHHHHHHcCCEEEEeCCccCHHHHHHHHHHHHhCCCCc-cccCcchhhhcccccccCCceeECCEEec
Confidence 99765799999999999999999999998889999999999999988632 2344443222 35566778899999999
Q ss_pred CCCCCcccccCCCcC
Q 014285 412 TNARGQGGFLKWTIV 426 (427)
Q Consensus 412 p~~pGlGve~d~~~v 426 (427)
|++|||||++|+++|
T Consensus 388 p~~PGLGve~d~~~l 402 (441)
T TIGR03247 388 PDKPGLGVEIDMDAV 402 (441)
T ss_pred CCCCCCCceeCHHHH
Confidence 999999999999875
|
Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized. |
| >COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-60 Score=481.23 Aligned_cols=349 Identities=23% Similarity=0.357 Sum_probs=297.0
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCCCH
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTL 144 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~~~ 144 (427)
|+|.+|+.+++.+|+..|+.++.++.+.+..++|+++|++|++|||||.+...... ...... ..+.+.+.|.++.++
T Consensus 1 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~v~i~~d~G~~G~GE~~~~~~~~~-~~~~~~--~~~~~~l~g~d~~~i 77 (372)
T COG4948 1 MKIMKITVIPVAVPLSPPFVTSGGTVRFFTRVIVEITTDDGIVGWGEAVPGGRARY-GEEAEA--VLLAPLLIGRDPFDI 77 (372)
T ss_pred CCceeEEEEEeeeecCCcccccccccccceEEEEEEEECCCceeeccccCcccccc-hhhhhH--HHHHHHhcCCCHHHH
Confidence 57888999999999999999999888899999999999999999999997532111 111111 257899999999999
Q ss_pred HHHHHHHHHHC---CCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecC-C-CHHHHHHHHHHHhhc
Q 014285 145 NFALDEIARIL---PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPA-V-SPAEASELASKYCKL 218 (427)
Q Consensus 145 ~~~~~~l~~~~---~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~-~-~~~~~~~~~~~~~~~ 218 (427)
+.+|+.+.... .|....++++|||+||||++||.+|+|||+||||. ++++++|.+... . +++...+.++.+.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~a~sAvd~ALwDl~gK~~g~Pv~~LLGg~~r~~v~~y~~~~~~~~~~e~~~~~~~~~~~~ 157 (372)
T COG4948 78 ERIWQKLYRAGFARRGGITMAAISAVDIALWDLAGKALGVPVYKLLGGKVRDEVRAYASGGGGEDPEEMAAEAARALVEL 157 (372)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHhHcCCcHHHHcCCceeeeEEEEEecCCCCCCHHHHHHHHHHHHhc
Confidence 99999998642 23334579999999999999999999999999998 578999988765 2 444445666666669
Q ss_pred CCcEEEEeccC-CchhhHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHH
Q 014285 219 GFSTLKLNVGR-NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVS 296 (427)
Q Consensus 219 Gf~~iKlKiG~-~~~~d~~~l~~ir~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~ 296 (427)
||+.+|+|+|. +.+.|+++++++|++ +++++|++|||++||+++|++++++|+++++ .|||||++++|.+++++|+
T Consensus 158 G~~~~Klk~g~~~~~~d~~~v~avRe~~g~~~~l~iDan~~~~~~~A~~~~~~l~~~~l--~~iEeP~~~~d~~~~~~l~ 235 (372)
T COG4948 158 GFKALKLKVGVGDGDEDLERVRALREAVGDDVRLMVDANGGWTLEEAIRLARALEEYGL--EWIEEPLPPDDLEGLRELR 235 (372)
T ss_pred CCceEEecCCCCchHHHHHHHHHHHHHhCCCceEEEeCCCCcCHHHHHHHHHHhcccCc--ceEECCCCccCHHHHHHHH
Confidence 99999999997 466999999999996 5699999999999999999999999999996 5999999999999999998
Q ss_pred HhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHH
Q 014285 297 NFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHL 375 (427)
Q Consensus 297 ~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hl 375 (427)
+ .+++|||+||++++..+++++++.+++|++|+|++++| ++++++++++|+.+++.+.+|. ++++++++++|+
T Consensus 236 ~----~~~~PIa~gEs~~~~~~~~~l~~~~a~div~~d~~~~GGite~~kia~~A~~~~~~v~~h~--~~~i~~aa~~hl 309 (372)
T COG4948 236 A----ATSTPIAAGESVYTRWDFRRLLEAGAVDIVQPDLARVGGITEALKIAALAEGFGVMVGPHV--EGPISLAAALHL 309 (372)
T ss_pred h----cCCCCEecCcccccHHHHHHHHHcCCCCeecCCccccCCHHHHHHHHHHHHHhCCceeccC--chHHHHHHHHHH
Confidence 6 56799999999999999999999999999999999997 9999999999997777777765 599999999999
Q ss_pred HhhcCCcceeccCCCcccccC-----CCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 376 AAGLGCIKYVNLNTPFLLSED-----PFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 376 aaal~~~~~~e~~~p~~~~~~-----~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+++.++ +.+++.+..+..+ ++.+++..+||++.+|++||||+|+|++.+
T Consensus 310 a~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~PGlGv~~~~~~~ 363 (372)
T COG4948 310 AAALPN--FGDLEGPLALADDDWYDDLVEEPLIVRGGLVHVPDGPGLGVELDEDAL 363 (372)
T ss_pred hhccch--hhhccccccccccchhhhhccCCccccCCeEeCCCCCCCCccccHHHH
Confidence 998744 3455555544333 566677889999999999999999998864
|
|
| >TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-59 Score=463.55 Aligned_cols=317 Identities=20% Similarity=0.290 Sum_probs=276.2
Q ss_pred EEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecC--CCCCcchHHH-HHHHHH-HhhHhcCCCCCCHHHHH
Q 014285 73 RELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTKA-LVKVRE-ACQFLRQSPPTTLNFAL 148 (427)
Q Consensus 73 ~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~--~~~s~~~~~~-~~~~~~-~~~~l~g~~~~~~~~~~ 148 (427)
|.+++|++.|+.++.+++++++.++|||+|++|++||||+.+. |.++++..+. ...+.+ +.|.+.| ++.+++.++
T Consensus 1 ~~~~lp~~~p~~~a~~~~~~~~~~lV~v~~~~G~~G~GE~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~g-~~~~~~~~~ 79 (324)
T TIGR01928 1 YHVSEPFKSPFKTSKGTLNHRDCLIIELIDDKGNAGFGEVVAFQTPWYTHETIATVKHIIEDFFEPNINK-EFEHPSEAL 79 (324)
T ss_pred CeecccCcCCEEcCCeeEecCcEEEEEEEECCCCeEEEeccccCCCCcCcccHHHHHHHHHHHHHHHhcC-CCCCHHHHH
Confidence 3578999999999999999999999999999999999999864 5555543332 333444 6789999 999999999
Q ss_pred HHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEecc
Q 014285 149 DEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVG 228 (427)
Q Consensus 149 ~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG 228 (427)
+.+.. ..+. +.+++||||||||++||..|+|+|+|||+.++++|+|.+++..+++++.+++++++++||++||+|+|
T Consensus 80 ~~~~~-~~~~--~~a~said~AlwDl~gk~~g~Pl~~llGg~~~~i~~y~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~ 156 (324)
T TIGR01928 80 ELVRS-LKGT--PMAKAGLEMALWDMYHKLPSFSLAYGQGKLRDKAPAGAVSGLANDEQMLKQIESLKATGYKRIKLKIT 156 (324)
T ss_pred HHHHH-ccCC--cHHHHHHHHHHHHHHHhhhCCcHHHHhCCCCCeEEEeEEcCCCCHHHHHHHHHHHHHcCCcEEEEEeC
Confidence 98865 3333 46899999999999999999999999999889999999988889999999999999999999999997
Q ss_pred CCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEE
Q 014285 229 RNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVV 308 (427)
Q Consensus 229 ~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa 308 (427)
. +.|+++++++|+.+|++.|++|||++|++++| +.+++|+++++ .|||||++++|++++++|++ ++++||+
T Consensus 157 ~--~~d~~~v~~vr~~~~~~~l~vDaN~~~~~~~a-~~~~~l~~~~~--~~iEeP~~~~~~~~~~~l~~----~~~~pia 227 (324)
T TIGR01928 157 P--QIMHQLVKLRRLRFPQIPLVIDANESYDLQDF-PRLKELDRYQL--LYIEEPFKIDDLSMLDELAK----GTITPIC 227 (324)
T ss_pred C--chhHHHHHHHHHhCCCCcEEEECCCCCCHHHH-HHHHHHhhCCC--cEEECCCChhHHHHHHHHHh----hcCCCEe
Confidence 4 67899999999977999999999999999986 57899999987 49999999999999999986 7899999
Q ss_pred ecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcceecc
Q 014285 309 ADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNL 387 (427)
Q Consensus 309 ~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~ 387 (427)
+||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++||++||+|+++|++|+++..++....|.
T Consensus 228 ~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~~es~i~~aa~~hla~~~~~~~~~~~ 307 (324)
T TIGR01928 228 LDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIETCREHGAKVWIGGMLETGISRAFNVALASLGGNDYPGDV 307 (324)
T ss_pred eCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEcceEcccHHHHHHHHHHhCCCCCCCCCC
Confidence 9999999999999999999999999999998 999999999999999999999999999999999999887765432343
Q ss_pred C-CCcccccCCCCCce
Q 014285 388 N-TPFLLSEDPFVGGC 402 (427)
Q Consensus 388 ~-~p~~~~~~~~~~~~ 402 (427)
. +..++..|++.+++
T Consensus 308 ~~~~~~~~~d~~~~~~ 323 (324)
T TIGR01928 308 SPSGYYFDQDIVAPSI 323 (324)
T ss_pred CCccccccccccCCCC
Confidence 2 33445556655443
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase. |
| >PRK15129 L-Ala-D/L-Glu epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-58 Score=453.74 Aligned_cols=316 Identities=24% Similarity=0.336 Sum_probs=273.3
Q ss_pred EEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhc-CCCCCCHHHH
Q 014285 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLR-QSPPTTLNFA 147 (427)
Q Consensus 69 ~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~-g~~~~~~~~~ 147 (427)
+++++++++|+++||.++.++.+.++.++|+|+ ++|.+||||++|.+.|+.........+..+.|.|. +. +.+.+
T Consensus 3 ~i~~~~~~lpl~~p~~~a~g~~~~~~~~lv~l~-~~G~~G~GE~~p~~~~~~~~~~~~~~l~~~~~~l~~~~---~~~~~ 78 (321)
T PRK15129 3 TVKVYEEAWPLHTPFVIARGSRSEARVVVVELE-EEGIKGTGECTPYPRYGESDASVMAQIMSVVPQLEKGL---TREAL 78 (321)
T ss_pred eEEEEEEEeeccCCEEccCceEEeeeEEEEEEE-eCCeEEEEeeCCcCCCCCCHHHHHHHHHHHHHHHhCCC---CHHHH
Confidence 789999999999999999999999999999998 68999999999988765322333344566788886 22 22222
Q ss_pred HHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEe
Q 014285 148 LDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLN 226 (427)
Q Consensus 148 ~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlK 226 (427)
+. .+ + .+++++||||||||+.||..|+|+|+||||. ++++|+|++++..+++++.+++++++++||++||+|
T Consensus 79 -~~---~~-~--~~~a~~aid~AlwDl~gk~~~~pl~~llGg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KlK 151 (321)
T PRK15129 79 -QK---LL-P--AGAARNAVDCALWDLAARQQQQSLAQLIGITLPETVTTAQTVVIGTPEQMANSASALWQAGAKLLKVK 151 (321)
T ss_pred -Hh---hc-c--ChHHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCceeEEEEecCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 11 12 2 2578999999999999999999999999996 678999999988899999999999999999999999
Q ss_pred ccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCe
Q 014285 227 VGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGIS 306 (427)
Q Consensus 227 iG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iP 306 (427)
+|. +.|+++++++|+..+++.||+|||++|++++|+++++.|+++++ .|||||++++|+++++++ .+++|
T Consensus 152 v~~--~~d~~~v~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i--~~iEqP~~~~~~~~l~~~------~~~~p 221 (321)
T PRK15129 152 LDN--HLISERMVAIRSAVPDATLIVDANESWRAEGLAARCQLLADLGV--AMLEQPLPAQDDAALENF------IHPLP 221 (321)
T ss_pred CCC--chHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCc--eEEECCCCCCcHHHHHHh------ccCCC
Confidence 975 46899999999976899999999999999999999999999997 499999999999888765 36899
Q ss_pred EEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCccee
Q 014285 307 VVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYV 385 (427)
Q Consensus 307 Ia~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~ 385 (427)
|++||++++..+++++. +++|++|+|++++| ++++++++++|+++|+++|+|||+||+++.++++|+ .++..+.
T Consensus 222 ia~dEs~~~~~d~~~~~--~~~d~v~~k~~~~GGi~~a~~i~~~a~~~gi~~~~g~~~es~i~~~a~~~l---~~~~~~~ 296 (321)
T PRK15129 222 ICADESCHTRSSLKALK--GRYEMVNIKLDKTGGLTEALALATEARAQGFALMLGCMLCTSRAISAALPL---VPQVRFA 296 (321)
T ss_pred EecCCCCCCHHHHHHHH--hhCCEEEeCchhhCCHHHHHHHHHHHHHcCCcEEEecchHHHHHHHHHHHH---hcCCcEe
Confidence 99999999999998884 68999999999998 999999999999999999999999999999999999 3566777
Q ss_pred ccCCCcccccCCCCCceeeeCcEEec
Q 014285 386 NLNTPFLLSEDPFVGGCEVSGAIYNF 411 (427)
Q Consensus 386 e~~~p~~~~~~~~~~~~~~~~G~i~~ 411 (427)
|+++++.+.+|+. +++.+++|++.+
T Consensus 297 dl~~~~~~~~d~~-~~~~~~~G~~~~ 321 (321)
T PRK15129 297 DLDGPTWLAVDVE-PALQFTTGELHL 321 (321)
T ss_pred cCCCchhhcccCC-CCeEEeCCEEeC
Confidence 9998888777864 568889998753
|
|
| >cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-57 Score=449.67 Aligned_cols=310 Identities=35% Similarity=0.563 Sum_probs=277.6
Q ss_pred EEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcch-HHHHHHHHHHhhHhcCCCCCCHHHH
Q 014285 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQ-TKALVKVREACQFLRQSPPTTLNFA 147 (427)
Q Consensus 69 ~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~-~~~~~~~~~~~~~l~g~~~~~~~~~ 147 (427)
+++++.+++|++.|+.++.++...++.++|||+|+ |++|||||.+++.++++. ......++.++|.|.|+++. ++.+
T Consensus 1 ~i~~~~~~~p~~~p~~~~~~~~~~~~~~~v~v~t~-G~~G~GE~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~-~~~~ 78 (316)
T cd03319 1 KISLRPERLPLKRPFTIARGSRTEAENVIVEIELD-GITGYGEAAPTPRVTGETVESVLAALKSVRPALIGGDPR-LEKL 78 (316)
T ss_pred CeEEEEEEeeccccEEeeCceEEeeeEEEEEEEEC-CEEEEEeecCCCCCCCCCHHHHHHHHHHHHHHhcCCCch-HHHH
Confidence 36788999999999999999999999999999999 999999999887655533 22333455679999999999 9999
Q ss_pred HHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhh-CCCCCceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEe
Q 014285 148 LDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLF-GGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLN 226 (427)
Q Consensus 148 ~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Ll-gg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlK 226 (427)
++.|.....+ .+++++||||||||++||..|+|+|+|| |+.++++|+|++++..+++++.+.+++++++||+.||+|
T Consensus 79 ~~~l~~~~~~--~~~a~~aid~AlwDl~gk~~g~pv~~ll~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~iKik 156 (316)
T cd03319 79 LEALQELLPG--NGAARAAVDIALWDLEAKLLGLPLYQLWGGGAPRPLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIK 156 (316)
T ss_pred HHHHHHhccC--ChHHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCCceeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 9999775443 3568999999999999999999999995 555789999988888889999999999999999999999
Q ss_pred ccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCe
Q 014285 227 VGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGIS 306 (427)
Q Consensus 227 iG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iP 306 (427)
+|.+.+.|+++++++|+..++++|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|++ .+++|
T Consensus 157 ~g~~~~~d~~~v~~lr~~~g~~~l~vD~n~~~~~~~A~~~~~~l~~~~l--~~iEeP~~~~d~~~~~~L~~----~~~ip 230 (316)
T cd03319 157 LGGDLEDDIERIRAIREAAPDARLRVDANQGWTPEEAVELLRELAELGV--ELIEQPVPAGDDDGLAYLRD----KSPLP 230 (316)
T ss_pred eCCChhhHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHHhcCC--CEEECCCCCCCHHHHHHHHh----cCCCC
Confidence 9988899999999999953399999999999999999999999999987 49999999999999999986 78999
Q ss_pred EEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCccee
Q 014285 307 VVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYV 385 (427)
Q Consensus 307 Ia~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~ 385 (427)
|++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+++|++|++++++|+++++ ..+.
T Consensus 231 Ia~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~~~i~~~a~~hl~a~~--~~~~ 308 (316)
T cd03319 231 IMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEALRIADLARAAGLKVMVGCMVESSLSIAAAAHLAAAK--ADFV 308 (316)
T ss_pred EEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCCEEEECchhhHHHHHHHHHHHhhc--CcEE
Confidence 999999999999999999999999999999997 9999999999999999999999999999999999999987 3444
Q ss_pred ccCCC
Q 014285 386 NLNTP 390 (427)
Q Consensus 386 e~~~p 390 (427)
|++.+
T Consensus 309 ~~~~~ 313 (316)
T cd03319 309 DLDGP 313 (316)
T ss_pred eccCc
Confidence 55443
|
The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK15440 L-rhamnonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-57 Score=459.19 Aligned_cols=343 Identities=15% Similarity=0.203 Sum_probs=272.4
Q ss_pred ccccccccC--CcceeeEEEEEEEEEEeeccc--ccccccee--EEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHH
Q 014285 52 TSLGFKNLT--ETFWVDVQRAEGRELNVALSA--PLSLGLSS--VENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKA 125 (427)
Q Consensus 52 ts~g~~~~~--~~~~~~I~~i~~~~~~~pl~~--p~~~a~~~--~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~ 125 (427)
.+.|.|+.. .+|.+. .+..|+.. .++.+..+ .+..+.++|||+|++|++||||+.+. +. ..
T Consensus 16 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~s~~~~~~~~vlVrI~td~G~~G~Ge~~~~-----~~-~~ 82 (394)
T PRK15440 16 GGGADYHDQGANHWIDD-------HIATPMSKYPEYRQSRQSFGINVLGTLVVEVEAENGQVGFAVSTAG-----EM-GA 82 (394)
T ss_pred CCCcccccCCCCccccc-------cccCchhcccccccCCCcceeeccceEEEEEEECCCCEEEEeCCCc-----HH-HH
Confidence 456888765 477764 22344432 23333333 35678899999999999999996431 11 11
Q ss_pred HHHHHHHhhHhcCCCCCCHHHHHHHHHHHC--CC--ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeee
Q 014285 126 LVKVREACQFLRQSPPTTLNFALDEIARIL--PG--SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITI 200 (427)
Q Consensus 126 ~~~~~~~~~~l~g~~~~~~~~~~~~l~~~~--~g--~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i 200 (427)
....+.+.|.|+|+++.+++.+|+.|++.. .+ ....++++|||+|||||+||.+|+|||+||||. ++++|+|.+.
T Consensus 83 ~~v~~~l~p~LiG~dp~~~e~l~~~m~~~~~~~g~~g~~~~A~saIDiALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~ 162 (394)
T PRK15440 83 FIVEKHLNRFIEGKCVSDIELIWDQMLNATLYYGRKGLVMNTISCVDLALWDLLGKVRGLPVYKLLGGAVRDELQFYATG 162 (394)
T ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHhhccccCCccHhhhHHHHHHHHHHHHhhhHcCCcHHHHcCCCCCCeeEEEecC
Confidence 112245889999999999999999997642 22 223468999999999999999999999999996 7899998753
Q ss_pred cCCCHHHHHHHHHHHhhcCCcEEEEecc--C-----CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhh
Q 014285 201 PAVSPAEASELASKYCKLGFSTLKLNVG--R-----NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLND 272 (427)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~Gf~~iKlKiG--~-----~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~ 272 (427)
. .++ + ..++||+++|+|+| + ++++|+++++++|+ ++|++.|+||||++|++++|++++++|++
T Consensus 163 ~--~~~-~------a~~~Gf~~~Kik~~~g~~~g~~~~~~di~~v~avReavG~d~~l~vDaN~~~~~~~Ai~~~~~le~ 233 (394)
T PRK15440 163 A--RPD-L------AKEMGFIGGKMPLHHGPADGDAGLRKNAAMVADMREKVGDDFWLMLDCWMSLDVNYATKLAHACAP 233 (394)
T ss_pred C--ChH-H------HHhCCCCEEEEcCCcCcccchHHHHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 2 222 1 13689999999994 2 35889999999999 58999999999999999999999999999
Q ss_pred CCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHH
Q 014285 273 MGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATR 351 (427)
Q Consensus 273 ~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~ 351 (427)
+++. |+|||++++|+++|++|++.. .+++||+.||++.+..+++++++.+++|++|+|++++| ++++++++++|+
T Consensus 234 ~~l~--wiEEPl~~~d~~~~~~L~~~~--~~~i~ia~gE~~~~~~~~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~ 309 (394)
T PRK15440 234 YGLK--WIEECLPPDDYWGYRELKRNA--PAGMMVTSGEHEATLQGFRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAK 309 (394)
T ss_pred cCCc--ceeCCCCcccHHHHHHHHHhC--CCCCceecCCCccCHHHHHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHH
Confidence 9974 999999999999999998621 24589999999999999999999999999999999997 999999999999
Q ss_pred HcCCcEEEcccCchhHHHHHHHHHHhhcCCcceeccC--CCc-----ccccCCCCCceeeeCcEEecC--CCCCcccccC
Q 014285 352 KSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLN--TPF-----LLSEDPFVGGCEVSGAIYNFT--NARGQGGFLK 422 (427)
Q Consensus 352 ~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~~--~p~-----~~~~~~~~~~~~~~~G~i~~p--~~pGlGve~d 422 (427)
++|+++++|+. .++++|++++++|..+.|+. .|. ....+.+...+.++||++.+| ++||||+|+|
T Consensus 310 a~gi~~~pH~~------~~~~~hl~aa~~n~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~vp~~~~PGlGveld 383 (394)
T PRK15440 310 ARGQLVVPHGS------SVYSHHFVITRTNSPFSEFLMMSPDADTVVPQFDPILLDEPVPVNGRIHKSVLDKPGFGVELN 383 (394)
T ss_pred HcCCeecccCH------HHHHHHHHhhCcCceeEEecccCccccccccchhhhhcCCCeeeCCEEECCCCCCCccCcccC
Confidence 99999999962 35788999999998877752 111 111122223366789999999 9999999999
Q ss_pred CCcC
Q 014285 423 WTIV 426 (427)
Q Consensus 423 ~~~v 426 (427)
++++
T Consensus 384 ~~~~ 387 (394)
T PRK15440 384 RDCN 387 (394)
T ss_pred HHHH
Confidence 9864
|
|
| >cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-55 Score=424.53 Aligned_cols=257 Identities=31% Similarity=0.501 Sum_probs=244.1
Q ss_pred EEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCCCHHHHHH
Q 014285 70 AEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALD 149 (427)
Q Consensus 70 i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 149 (427)
|+++++++|+++||.++.++.+.++.++|+|+|++|.+||||++
T Consensus 1 i~~~~~~lpl~~~~~~~~~~~~~~~~~~v~l~~~~G~~G~GE~~------------------------------------ 44 (265)
T cd03315 1 VEAIPVRLPLKRPLKWASGTLTTADHVLLRLHTDDGLVGWAEAT------------------------------------ 44 (265)
T ss_pred CEEEEEeecccCceEecceeEeccceEEEEEEECCCCEEEeccH------------------------------------
Confidence 46789999999999999999999999999999999999999985
Q ss_pred HHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC
Q 014285 150 EIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR 229 (427)
Q Consensus 150 ~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~ 229 (427)
++|||+||||+.||..|+|+++|+|+.++++|+|++++..+++++.+++++++++||++||+|+|.
T Consensus 45 --------------~~aid~Al~Dl~gk~~g~pv~~llG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg~ 110 (265)
T cd03315 45 --------------KAAVDMALWDLWGKRLGVPVYLLLGGYRDRVRVAHMLGLGEPAEVAEEARRALEAGFRTFKLKVGR 110 (265)
T ss_pred --------------HHHHHHHHHHHHHHHcCCcHHHHcCCCCCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEEecCC
Confidence 589999999999999999999999998899999999888889999999999999999999999998
Q ss_pred CchhhHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEE
Q 014285 230 NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVV 308 (427)
Q Consensus 230 ~~~~d~~~l~~ir~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa 308 (427)
+.++|++++++||+. ++++.|++|+|++|++++|+++++.|+++++ .|||||++.+|++++++|++ .+++||+
T Consensus 111 ~~~~d~~~v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~ipia 184 (265)
T cd03315 111 DPARDVAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALEDLGL--DYVEQPLPADDLEGRAALAR----ATDTPIM 184 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHHhcCC--CEEECCCCcccHHHHHHHHh----hCCCCEE
Confidence 888999999999995 6899999999999999999999999999987 49999999999999999986 7899999
Q ss_pred ecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCc
Q 014285 309 ADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCI 382 (427)
Q Consensus 309 ~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~ 382 (427)
+||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++||++||+|+++|++|++++++..
T Consensus 185 ~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s~i~~~a~~hlaa~~~~~ 259 (265)
T cd03315 185 ADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIESGLGTLANAHLAAALRAV 259 (265)
T ss_pred ECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHHHHHHHHHcCCcEEecCccchHHHHHHHHHHHHhCCcc
Confidence 9999999999999999999999999999998 9999999999999999999999999999999999999998643
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions. |
| >TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-52 Score=411.73 Aligned_cols=288 Identities=23% Similarity=0.299 Sum_probs=245.8
Q ss_pred EEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHH-HHHHHHHHhhHhcCCCCCCHHHHHHHH
Q 014285 73 RELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTK-ALVKVREACQFLRQSPPTTLNFALDEI 151 (427)
Q Consensus 73 ~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~l 151 (427)
|.+++|++.||.++.++.+.++.++|+|+ ++|.+|||||.|+|.|++++.+ ....+..+.+.+.++++.++..
T Consensus 1 ~~~~lpl~~p~~~a~g~~~~~~~~iv~l~-~~G~~G~GE~~p~~~~~~et~~~~~~~l~~l~~~l~~~~~~~~~~----- 74 (307)
T TIGR01927 1 YRYQMPFDAPVVTRHGLLARREGLIVRLT-DEGRTGWGEIAPLPGFGTETLAEALDFCRALIEEITRGDIEAIDD----- 74 (307)
T ss_pred CcEeccCCCCcCcCceeEEeeeEEEEEEE-ECCcEEEEEeecCCCCCcccHHHHHHHHHHHHHHhcccchhhccc-----
Confidence 46789999999999999999999999999 5699999999999988886554 3345567888888776543321
Q ss_pred HHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC-C
Q 014285 152 ARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-N 230 (427)
Q Consensus 152 ~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~-~ 230 (427)
..+++++||||||||+.||. +.|. ...+...++++.+++++.+++.+ ++||++||+|+|. +
T Consensus 75 -------~~~~~~~aie~Al~Dl~~k~-~~~~--------~~~~~~~~l~~~~~~~~~~~~~~--~~Gf~~~KiKvG~~~ 136 (307)
T TIGR01927 75 -------QLPSVAFGFESALIELESGD-ELPP--------ASNYYVALLPAGDPALLLLRSAK--AEGFRTFKWKVGVGE 136 (307)
T ss_pred -------cCcHHHHHHHHHHHHHhcCC-CCCc--------ccccceeeccCCCHHHHHHHHHH--hCCCCEEEEEeCCCC
Confidence 12578999999999999987 2211 22233456667888888776665 7899999999996 6
Q ss_pred chhhHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHhhh---CCCCCceEeCCCCCCChhhHHHHHHhhccccCCe
Q 014285 231 ITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLND---MGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGIS 306 (427)
Q Consensus 231 ~~~d~~~l~~ir~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~---~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iP 306 (427)
+++|++++++||+. ++++.||||||++|+.++|++++++|++ +++ .|||||++.+ +++++|++ ++++|
T Consensus 137 ~~~d~~~v~~vr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~i--~~iEqP~~~~--~~~~~l~~----~~~~P 208 (307)
T TIGR01927 137 LAREGMLVNLLLEALPDKAELRLDANGGLSPDEAQQFLKALDPNLRGRI--AFLEEPLPDA--DEMSAFSE----ATGTA 208 (307)
T ss_pred hHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHhcccccCCCc--eEEeCCCCCH--HHHHHHHH----hCCCC
Confidence 88999999999995 6779999999999999999999999997 776 5999999865 89999976 68999
Q ss_pred EEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCccee
Q 014285 307 VVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYV 385 (427)
Q Consensus 307 Ia~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~ 385 (427)
|++||++.+..++.++++.+++|++|+|++++| ++++++++++|+++|+++++||++||+|++++++|+++++++....
T Consensus 209 ia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~es~i~~aa~~hlaa~~~~~~~~ 288 (307)
T TIGR01927 209 IALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFESSIALGQLARLAAKLSPDPAA 288 (307)
T ss_pred EEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECccchHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999999999999999999998 9999999999999999999999999999999999999999877666
Q ss_pred ccCCCcc
Q 014285 386 NLNTPFL 392 (427)
Q Consensus 386 e~~~p~~ 392 (427)
.++++..
T Consensus 289 ~~~~~~~ 295 (307)
T TIGR01927 289 VGFTTAL 295 (307)
T ss_pred CCccHHH
Confidence 6666543
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error. |
| >cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-53 Score=406.08 Aligned_cols=250 Identities=28% Similarity=0.398 Sum_probs=231.2
Q ss_pred EEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCCCHHHHHHH
Q 014285 71 EGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDE 150 (427)
Q Consensus 71 ~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 150 (427)
+++++++|+++||.++.++++.++.++|+|+|++|.+||||+.|.+
T Consensus 2 ~~~~~~lpl~~~~~~~~~~~~~~~~~~v~l~~~~G~~G~GE~~p~~---------------------------------- 47 (263)
T cd03320 2 RLYPYSLPLSRPLGTSRGRLTRRRGLLLRLEDLTGPVGWGEIAPLP---------------------------------- 47 (263)
T ss_pred ccEEEEeecCCcccccCceEEEEeEEEEEEecCCCCeeEEeccchH----------------------------------
Confidence 4678999999999999999999999999999999999999998642
Q ss_pred HHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC
Q 014285 151 IARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR 229 (427)
Q Consensus 151 l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~ 229 (427)
+++||||||||+.||..| ||. ++++|+|.+++..++ ++.+.+++++++||++||+|+|.
T Consensus 48 ------------a~aaid~AlwDl~gk~~g-------gg~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~Gf~~~KiKvg~ 107 (263)
T cd03320 48 ------------LAFGIESALANLEALLVG-------FTRPRNRIPVNALLPAGDA-AALGEAKAAYGGGYRTVKLKVGA 107 (263)
T ss_pred ------------HHHHHHHHHhcccccccC-------CCCCccCcceeEEecCCCH-HHHHHHHHHHhCCCCEEEEEECC
Confidence 479999999999999998 665 789999999888777 55567888889999999999996
Q ss_pred -CchhhHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeE
Q 014285 230 -NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISV 307 (427)
Q Consensus 230 -~~~~d~~~l~~ir~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPI 307 (427)
++++|++++++||+. ++++.|++|||++|++++|+++++.|+++++ .|||||++++|++++++|+ +++||
T Consensus 108 ~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~------~~~PI 179 (263)
T cd03320 108 TSFEEDLARLRALREALPADAKLRLDANGGWSLEEALAFLEALAAGRI--EYIEQPLPPDDLAELRRLA------AGVPI 179 (263)
T ss_pred CChHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHhhcccCC--ceEECCCChHHHHHHHHhh------cCCCe
Confidence 578999999999995 6799999999999999999999999999987 4999999999999999884 68999
Q ss_pred EecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCc
Q 014285 308 VADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCI 382 (427)
Q Consensus 308 a~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~ 382 (427)
++||++.+..++.++++.+++|++|+|++++| ++++++++++|+++|+++++||++||+|+++|++|+++++++.
T Consensus 180 a~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~es~ig~aa~~hlaa~~~~~ 255 (263)
T cd03320 180 ALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARGIPAVVSSALESSIGLGALAHLAAALPPL 255 (263)
T ss_pred eeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCCEEEEcchhhHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999997 9999999999999999999999999999999999999998873
|
Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK05105 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-50 Score=400.16 Aligned_cols=295 Identities=20% Similarity=0.209 Sum_probs=247.7
Q ss_pred EEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHH-HHHHHHhhHhcCCCCCCHHH
Q 014285 68 QRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL-VKVREACQFLRQSPPTTLNF 146 (427)
Q Consensus 68 ~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~-~~~~~~~~~l~g~~~~~~~~ 146 (427)
++++++++++|++.||.++.++.+.++.++|+|+ ++|.+|||||+|.|.|++++.+.. ..+.+..+.+.+.+..+.
T Consensus 2 ~~i~~~~~~lpl~~p~~~a~g~~~~~~~viV~l~-d~G~~G~GE~~p~~~~~~et~~~~~~~l~~~~~~~~~~~~~~~-- 78 (322)
T PRK05105 2 RSAQLYRYQIPMDAGVPLRKQRLKTRDGLVVQLR-EGEREGWGEIAPLPGFSQETLEEAQEALLAWLNNWLAGDCDDE-- 78 (322)
T ss_pred cceEEEEEEEecCCCceecceEEEEeeeEEEEEE-ECCcEEEEEeCCCCCCCccCHHHHHHHHHHHHHHhhcCccccc--
Confidence 4789999999999999999999999999999997 789999999999999988655433 345553333444433321
Q ss_pred HHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEe
Q 014285 147 ALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLN 226 (427)
Q Consensus 147 ~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlK 226 (427)
...++++++++++|+||+.||..|.|++.. .+++..+++++.++++++ +||++||+|
T Consensus 79 ----------~~~~~~a~~~i~~Al~dl~gk~~~~~~~~~-----------~~l~~~~~~~~~~~a~~~--~Gf~~~KvK 135 (322)
T PRK05105 79 ----------LSQYPSVAFGLSCALAELAGTLPQAANYRT-----------APLCYGDPDELILKLADM--PGEKVAKVK 135 (322)
T ss_pred ----------cccCcHHHHHHHHHHHHhcCCCCCCCCcce-----------eeeecCCHHHHHHHHHHc--CCCCEEEEE
Confidence 123467899999999999999999988621 224456888888888876 899999999
Q ss_pred ccC-CchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhh---CCCCCceEeCCCCCCChhhHHHHHHhhccc
Q 014285 227 VGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLND---MGVIPVLFEQPVHRDDWSGLHDVSNFARDT 302 (427)
Q Consensus 227 iG~-~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~---~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~ 302 (427)
+|. ++++|++++++||+..+++.||+|||++|++++|++++++|++ +++ .|||||++. .+++++|++ +
T Consensus 136 vG~~~~~~d~~~i~~vr~~~~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~i--~~iEqP~~~--~~~~~~l~~----~ 207 (322)
T PRK05105 136 VGLYEAVRDGMLVNLLLEAIPDLKLRLDANRGWTLEKAQQFAKYVPPDYRHRI--AFLEEPCKT--PDDSRAFAR----A 207 (322)
T ss_pred ECCCCHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCc--cEEECCCCC--HHHHHHHHH----h
Confidence 995 7889999999999966899999999999999999999999998 876 599999964 567888875 7
Q ss_pred cCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCC
Q 014285 303 YGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGC 381 (427)
Q Consensus 303 ~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~ 381 (427)
+++||++||++.+.. ....+ .++++++|+|++++| ++++++++++|+++|+++++||++||+|+.++++|+++++++
T Consensus 208 ~~~PIa~DEs~~~~~-~~~~~-~~~~d~i~ik~~k~GGi~~a~~i~~~A~~~gi~~~~~~~~es~i~~aa~~hla~~~~~ 285 (322)
T PRK05105 208 TGIAIAWDESLREPD-FQFEA-EPGVRAIVIKPTLTGSLEKCQELIEQAHALGLRAVISSSIESSLGLTQLARLAAWLTP 285 (322)
T ss_pred CCCCEEECCCCCchh-hhhhh-cCCCCEEEECccccCCHHHHHHHHHHHHHcCCcEEEECchhHHHHHHHHHHHHHhcCC
Confidence 899999999999975 44444 567999999999998 999999999999999999999999999999999999999966
Q ss_pred cceeccCCCcccccCCC
Q 014285 382 IKYVNLNTPFLLSEDPF 398 (427)
Q Consensus 382 ~~~~e~~~p~~~~~~~~ 398 (427)
..+++++++.++.+|+.
T Consensus 286 ~~~~~l~t~~~~~~d~~ 302 (322)
T PRK05105 286 DTIPGLDTLDLMQAQLV 302 (322)
T ss_pred CCCCCCChHHHHhhccc
Confidence 56777887777766643
|
|
| >PRK02714 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-50 Score=396.98 Aligned_cols=282 Identities=21% Similarity=0.284 Sum_probs=234.3
Q ss_pred EEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHH-HHHHHHhhHhcCCCCCCHHHH
Q 014285 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL-VKVREACQFLRQSPPTTLNFA 147 (427)
Q Consensus 69 ~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~-~~~~~~~~~l~g~~~~~~~~~ 147 (427)
+++++++++|++.||.++.++.+.++.++|+|+|++|++||||++|.|.|++++.+.. ..++.+.|.+.++ .+
T Consensus 4 ~~~~~~~~lpl~~p~~~a~g~~~~~~~~iV~l~~~~G~~G~GE~~p~p~~~~et~~~~~~~l~~l~~~l~~~------~~ 77 (320)
T PRK02714 4 RFAFRPYQRPFRQPLQTAHGLWRIREGIILRLTDETGKIGWGEIAPLPWFGSETLEEALAFCQQLPGEITPE------QI 77 (320)
T ss_pred EEEEEEEEEecCCceEeccceEEEeEEEEEEEEeCCCCeEEEEecCCCCCCcccHHHHHHHHHhccccCCHH------HH
Confidence 5779999999999999999999999999999999999999999999998887654433 2233344444321 11
Q ss_pred HHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEec
Q 014285 148 LDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNV 227 (427)
Q Consensus 148 ~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKi 227 (427)
..+. ..++++++|+|+|+.|+.++..+. ....+|++.++ .+++++.+++++++++||++||+|+
T Consensus 78 -~~~~-----~~~~~~~~aie~A~d~~~~~~~~~--------~~~~~~~~~~i--~~~~~~~~~a~~~~~~G~~~~KvKv 141 (320)
T PRK02714 78 -FSIP-----DALPACQFGFESALENESGSRSNV--------TLNPLSYSALL--PAGEAALQQWQTLWQQGYRTFKWKI 141 (320)
T ss_pred -Hhhh-----hcCCHHHHHHHHHHHHHhcccccC--------CcCCCceeeec--CCCHHHHHHHHHHHHcCCCEEEEEE
Confidence 1111 123578999999933455554221 12345555444 4567888899999999999999999
Q ss_pred cC-CchhhHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHhhh---CCCCCceEeCCCCCCChhhHHHHHHhhccc
Q 014285 228 GR-NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLND---MGVIPVLFEQPVHRDDWSGLHDVSNFARDT 302 (427)
Q Consensus 228 G~-~~~~d~~~l~~ir~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~---~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~ 302 (427)
|. ++++|++++++||+. ++++.|++|||++|++++|+++++.|++ +++ .|||||++.+|++++++|++ +
T Consensus 142 G~~~~~~d~~~v~air~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~l~~~~i--~~iEqP~~~~~~~~~~~l~~----~ 215 (320)
T PRK02714 142 GVDPLEQELKIFEQLLERLPAGAKLRLDANGGLSLEEAKRWLQLCDRRLSGKI--EFIEQPLPPDQFDEMLQLSQ----D 215 (320)
T ss_pred CCCChHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhhccCCCc--cEEECCCCcccHHHHHHHHH----h
Confidence 97 578899999999995 7899999999999999999999999998 676 59999999999999999986 7
Q ss_pred cCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCC
Q 014285 303 YGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGC 381 (427)
Q Consensus 303 ~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~ 381 (427)
+++||++||++.+..+++++++.+++|++|+|++++| ++++ .++|+++|+++++||++||+||++|++|+++++++
T Consensus 216 ~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~ik~~k~GGi~~~---~~~a~~~gi~~~~~~~~es~ig~aa~~hlaa~~~~ 292 (320)
T PRK02714 216 YQTPIALDESVANLAQLQQCYQQGWRGIFVIKPAIAGSPSRL---RQFCQQHPLDAVFSSVFETAIGRKAALALAAELSR 292 (320)
T ss_pred CCCCEEECCccCCHHHHHHHHHcCCCCEEEEcchhcCCHHHH---HHHHHHhCCCEEEEechhhHHHHHHHHHHHHhCCC
Confidence 8999999999999999999999999999999999997 9854 46799999999999999999999999999999876
|
|
| >TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-49 Score=398.55 Aligned_cols=286 Identities=17% Similarity=0.224 Sum_probs=242.9
Q ss_pred eeeEEEEEEEEcCCceEEEEeecCCCCCcch-------HH-HHHHHH-HHhhHhcCCCCCCHHHHHHHHHHHC-CCChhh
Q 014285 92 NVENVAIRVELSNGCVGWGEVAVVPLVTGDQ-------TK-ALVKVR-EACQFLRQSPPTTLNFALDEIARIL-PGSEFA 161 (427)
Q Consensus 92 ~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~-------~~-~~~~~~-~~~~~l~g~~~~~~~~~~~~l~~~~-~g~~~~ 161 (427)
..+.++|+|+|++|.+|||||+|. .|+++. .+ ....++ .+.|.|+|+++.+++.+++.|.... .+...+
T Consensus 48 ~~~~vlV~i~tddG~~G~GE~~~~-~ysg~~g~~~~~~~~~~~~~i~~~laP~LiG~d~~~~~~l~~~~~~~~~~~~~~~ 126 (408)
T TIGR01502 48 PGESLSVLLVLEDGQVVHGDCAAV-QYSGAGGRDPLFLAKDFIPVIEKEVAPKLIGRDITNFKDMAEVFEKMTVNRNLHT 126 (408)
T ss_pred cCcEEEEEEEECCCCEEEEEeecc-eeccCccccccccHHHHHHHHHHHhhHHHcCCCccCHHHHHHHHHHHhhcCcchh
Confidence 468899999999999999999974 566632 23 233444 4899999999999999999998753 121234
Q ss_pred hHHHHHHHHHHHHHHhhCCCChhhhhC------CCCCceeeeeeecC---CCHHHHHHHHHHHhhcC-CcEEEEeccCCc
Q 014285 162 SVRAGVEMALIDAVANSIDIPLWRLFG------GASNSLSTAITIPA---VSPAEASELASKYCKLG-FSTLKLNVGRNI 231 (427)
Q Consensus 162 ~a~~aie~Al~Dl~gk~~g~Pl~~Llg------g~~~~ip~~~~i~~---~~~~~~~~~~~~~~~~G-f~~iKlKiG~~~ 231 (427)
++++|||+||||++||..|+|+|+||| +.++++|+|++++. .++++|...+++++++| |+.+| |+|.+.
T Consensus 127 a~kaavd~AL~D~~ak~~g~pl~~LLG~~~~~~~~~~~vp~~~s~g~~~~~~~d~m~~~a~~~~~~G~~~~~K-kvG~~~ 205 (408)
T TIGR01502 127 AIRYGVSQALLDAAAKTRKTTMAEVIRDEYNPGAETNAVPVFAQSGDDRYDNVDKMILKEVDVLPHGLINSVE-ELGLDG 205 (408)
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHhCcccccCCcCCceeEEEEeeccCCCCHHHHHHHHHHHHhccCcccee-eecCCH
Confidence 678999999999999999999999998 55789999999874 57899999999999998 99999 899865
Q ss_pred hhhH-------HHHHHHHHhCCCcEEEEeCCC------CCCHHHHHHHHHHhhh----CCCCCceEeCCCCCCC----hh
Q 014285 232 TADF-------DVLQAIHAVHPHCSFILDANE------GYTSEEAVEVLGKLND----MGVIPVLFEQPVHRDD----WS 290 (427)
Q Consensus 232 ~~d~-------~~l~~ir~~~~~~~L~vDAN~------~~s~~~A~~~l~~L~~----~~l~~~~iEqP~~~~d----~~ 290 (427)
.+|. ++++++|+.+++..|+||+|+ +|++++|+++++.|++ +++ |||||++.+| ++
T Consensus 206 ~k~~~~~~~~~~ri~~lr~~g~~~~l~vDaN~~~~~~~~~~~~~ai~~l~~l~~~~~~~~~---~iEqPv~~~d~~~~~e 282 (408)
T TIGR01502 206 EKLLEYVKWLRDRIIKLGREGYAPIFHIDVYGTIGEAFGVDIKAMADYIQTLAEAAKPFHL---RIEGPMDVGSRQAQIE 282 (408)
T ss_pred HHhhhhHHHHHHHHHHhhccCCCCeEEEEcCCCcccccCCCHHHHHHHHHHHHHhCccCCe---EEecCCCCCcchhhHH
Confidence 4444 566666644568899999998 9999999999999986 553 9999999865 99
Q ss_pred hHHHHHHhhc-cccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccC-chhH
Q 014285 291 GLHDVSNFAR-DTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRL 367 (427)
Q Consensus 291 ~~~~L~~~~r-~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~i 367 (427)
++++|++.++ +.+++||++||++.++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. ||+|
T Consensus 283 ~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~~es~I 362 (408)
T TIGR01502 283 AMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGTCNETNR 362 (408)
T ss_pred HHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCCCCCCHH
Confidence 9999986321 126999999999999999999999999999999999997 999999999999999999999986 9999
Q ss_pred HHHHHHHHHhhcCCc
Q 014285 368 ATGFALHLAAGLGCI 382 (427)
Q Consensus 368 g~~a~~hlaaal~~~ 382 (427)
+.++++|++++++..
T Consensus 363 ~~aa~~Hlaaa~~~~ 377 (408)
T TIGR01502 363 SAEVTTHVGMATGAR 377 (408)
T ss_pred HHHHHHHHHHhcCCC
Confidence 999999999987653
|
This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation. |
| >cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-49 Score=395.30 Aligned_cols=288 Identities=18% Similarity=0.238 Sum_probs=233.5
Q ss_pred eeEEEEEEEEcCCceEEEEeecCCCC---Ccch-----HHHHHHHH-HHhhHhcCCCCCCHHHHHHHHHHHC-CCCh-hh
Q 014285 93 VENVAIRVELSNGCVGWGEVAVVPLV---TGDQ-----TKALVKVR-EACQFLRQSPPTTLNFALDEIARIL-PGSE-FA 161 (427)
Q Consensus 93 ~~~vlV~v~t~~G~~G~GE~~~~~~~---s~~~-----~~~~~~~~-~~~~~l~g~~~~~~~~~~~~l~~~~-~g~~-~~ 161 (427)
.+.++|||+||+|++||||+.+. .+ +++. ......++ .+.|.|+|+|+.+++.+|+.|++.. .|+. ..
T Consensus 12 ~~~vlV~I~tddG~~G~GEa~~~-~~~~~~g~~~~~~~~~~~~~i~~~lap~LiG~d~~~i~~i~~~m~~~~~~g~~~~~ 90 (369)
T cd03314 12 GEAISVMLVLEDGQVAVGDCAAV-QYSGAGGRDPLFLAADFIPVIEKVIAPALVGRDVANFRPAAAVLDKMRLDGNRLHT 90 (369)
T ss_pred CcEEEEEEEECCCCEEEEecccc-cccCcCCcccccchHHHHHHHHHhhhhHhcCCCHHHHHHHHHHHHHHhhcCCcchh
Confidence 46899999999999999999753 22 2221 12222343 4889999999999999999997643 2332 24
Q ss_pred hHHHHHHHHHHHHHHhhCCCChhhhhC-----CC-CCceeeeeeecCC---CHHHHHHHHHHHhhc---------CCcEE
Q 014285 162 SVRAGVEMALIDAVANSIDIPLWRLFG-----GA-SNSLSTAITIPAV---SPAEASELASKYCKL---------GFSTL 223 (427)
Q Consensus 162 ~a~~aie~Al~Dl~gk~~g~Pl~~Llg-----g~-~~~ip~~~~i~~~---~~~~~~~~~~~~~~~---------Gf~~i 223 (427)
++++|||+||||+.||.+|+|||+||| |. ++++|+|.+++.. ..+++.+++++++++ ||+.+
T Consensus 91 aaksAIDiALwDl~gK~~g~Pv~~LLGg~~~~g~~r~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~kG~~~~ 170 (369)
T cd03314 91 AIRYGVSQALLDAVALAQRRTMAEVLCDEYGLPLADEPVPIFAQSGDDRYINVDKMILKGADVLPHALINNVEEKGPKGE 170 (369)
T ss_pred hHHHHHHHHHHHHHHHHhCCcHHHHcCCcccCCCcccceEEEEEecCcccccHHHHHHHHHhhhhhhhhhhHhhcCccHH
Confidence 578999999999999999999999999 43 6899999876542 356666666555533 55555
Q ss_pred EEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCC----C--CHHHHHHHHHHhhhC-C-CCCceEeCCCCCCC----hhh
Q 014285 224 KLNVGRNITADFDVLQAIHAVHPHCSFILDANEG----Y--TSEEAVEVLGKLNDM-G-VIPVLFEQPVHRDD----WSG 291 (427)
Q Consensus 224 KlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~----~--s~~~A~~~l~~L~~~-~-l~~~~iEqP~~~~d----~~~ 291 (427)
|+|. +.++|.++++++|..++++.|+||+|++ | |+++|+++++.|+++ + + +.|||||++++| +++
T Consensus 171 K~~~--~~~~~~~~v~avr~~G~~~~l~vDaN~~w~~~~~~~~~~A~~~~~~Le~~~~~~-~~~iEqP~~~~d~~~~~~~ 247 (369)
T cd03314 171 KLLE--YVKWLSDRIRKLGRPGYHPILHIDVYGTIGQAFDPDPDRAADYLATLEEAAAPF-PLRIEGPMDAGSREAQIER 247 (369)
T ss_pred HHHH--hHHHHHHHHHHHhhcCCCCEEEEEcCCccccccCCCHHHHHHHHHHHHHhcCCC-cEEEecCCCCCcchhhHHH
Confidence 5554 3567889999999668999999999986 6 999999999999976 2 2 359999999865 899
Q ss_pred HHHHHHhhc-cccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccC-chhHH
Q 014285 292 LHDVSNFAR-DTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRLA 368 (427)
Q Consensus 292 ~~~L~~~~r-~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~ig 368 (427)
|++|++..+ +.+++||++||++.++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. ||+|+
T Consensus 248 ~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA~a~Gi~~~~h~~~~es~I~ 327 (369)
T cd03314 248 MAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYCKEHGVGAYLGGSCNETDIS 327 (369)
T ss_pred HHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHHHHcCCcEEEeCCCCCchHH
Confidence 999986210 115899999999999999999999999999999999998 999999999999999999999874 99999
Q ss_pred HHHHHHHHhhcCCcce
Q 014285 369 TGFALHLAAGLGCIKY 384 (427)
Q Consensus 369 ~~a~~hlaaal~~~~~ 384 (427)
.++++|+++++++...
T Consensus 328 ~aa~lHlaaa~~~~~~ 343 (369)
T cd03314 328 ARVTVHVALATRADQM 343 (369)
T ss_pred HHHHHHHHHhcCCcce
Confidence 9999999999887643
|
This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-49 Score=457.20 Aligned_cols=313 Identities=25% Similarity=0.315 Sum_probs=257.8
Q ss_pred cccccccccccCCcceeeEEEEEEEEEEeecccccccccee--EEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHH
Q 014285 49 SERTSLGFKNLTETFWVDVQRAEGRELNVALSAPLSLGLSS--VENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL 126 (427)
Q Consensus 49 ~~~ts~g~~~~~~~~~~~I~~i~~~~~~~pl~~p~~~a~~~--~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~ 126 (427)
+..-+.|++. |||++++++++++|++.|+.++.++ ...++.++|+|+|++|.+|||||+|++.++.+..+..
T Consensus 921 ~~~~~~~~~~------~~I~~i~~~~~~lpl~~p~~~a~g~~~~~~r~~~lV~l~~ddG~~G~GEa~pl~~~~et~~~~~ 994 (1655)
T PLN02980 921 LHSIIDGVFL------CKISGMEYSLYRIQLCAPPTSASVDFSQFHREGFILSLSLEDGSVGFGEVAPLEIHEEDLLDVE 994 (1655)
T ss_pred cccccccccc------ceEeEEEEEEEEeeccCCcEeeccccccceeeEEEEEEEECCCCEEEEecCCCCCCccccccHH
Confidence 4444555544 9999999999999999999999875 3468999999999999999999999865432211111
Q ss_pred HHH------------HHHhhHhcCCCCCCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCC---
Q 014285 127 VKV------------REACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGAS--- 191 (427)
Q Consensus 127 ~~~------------~~~~~~l~g~~~~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~--- 191 (427)
..+ ..+.|.|.|.+. +.+|+.+.. ..+..++++++||||||||+.||..|+|+|+||||.+
T Consensus 995 ~~l~~~~~~l~~~~~~~l~p~l~G~~~---~~~~~~l~~-~~~~~~psa~~ald~ALwDl~gk~~g~Pl~~LLGg~~~~~ 1070 (1655)
T PLN02980 995 EQLRFLLHVIKGAKISFMLPLLKGSFS---SWIWSELGI-PPSSIFPSVRCGLEMAILNAIAVRHGSSLLNILDPYQKDE 1070 (1655)
T ss_pred HHHHHHHHHHhhhhhhhhhHhhcCcch---HHHHHHhhc-cccccchHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCc
Confidence 111 123577777733 333444421 1123468899999999999999999999999998743
Q ss_pred ------Cceeeeeee-cCCCHHHHHHHHHHHhhcCCcEEEEeccC--CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHH
Q 014285 192 ------NSLSTAITI-PAVSPAEASELASKYCKLGFSTLKLNVGR--NITADFDVLQAIHA-VHPHCSFILDANEGYTSE 261 (427)
Q Consensus 192 ------~~ip~~~~i-~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~--~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~ 261 (427)
.++|+|..+ +..+++++.+++++++++||+++|+|+|. ++++|++++++||+ .+++++||+|||++|+++
T Consensus 1071 ~~~~~~~~v~v~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KlKvG~~~~~~~D~~~i~alRe~~G~~~~LrlDAN~~ws~~ 1150 (1655)
T PLN02980 1071 NGSEQSHSVQICALLDSNGSPLEVAYVARKLVEEGFSAIKLKVGRRVSPIQDAAVIQEVRKAVGYQIELRADANRNWTYE 1150 (1655)
T ss_pred ceeccccceeeeeccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHH
Confidence 346666655 45689999999999999999999999995 57899999999999 578999999999999999
Q ss_pred HHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHH-----HHHHHHcCCCcEEEeCCC
Q 014285 262 EAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLND-----VQKVMQENLASVVNIKLA 336 (427)
Q Consensus 262 ~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~-----~~~ll~~~a~~~i~lk~~ 336 (427)
+|++++++|+++++. |||||++ +++++++|++ ++++|||+||++.+..+ ++++++.+ ++++++|++
T Consensus 1151 ~A~~~~~~L~~~~i~--~iEqPl~--~~~~l~~l~~----~~~iPIA~DEs~~~~~~~~~~~~~~~i~~~-~~~i~iK~~ 1221 (1655)
T PLN02980 1151 EAIEFGSLVKSCNLK--YIEEPVQ--DEDDLIKFCE----ETGLPVALDETIDKFEECPLRMLTKYTHPG-IVAVVIKPS 1221 (1655)
T ss_pred HHHHHHHHHhhcCCC--EEECCCC--CHHHHHHHHH----hCCCCEEeCCCcCCcccchHHHHHHHHHCC-CeEEEeChh
Confidence 999999999999874 9999997 5789999986 78999999999998754 66777665 557899999
Q ss_pred Ccc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcC
Q 014285 337 KFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLG 380 (427)
Q Consensus 337 ~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~ 380 (427)
++| ++++++++++|+++|+++++||++||+||++|++|+++.++
T Consensus 1222 ~~GGit~~~~ia~~A~~~gi~~~~~s~~es~Ig~aA~~hlaa~~~ 1266 (1655)
T PLN02980 1222 VVGGFENAALIARWAQQHGKMAVISAAYESGLGLSAYIQFASYLE 1266 (1655)
T ss_pred hhCCHHHHHHHHHHHHHcCCeEEecCcccCHHHHHHHHHHHHhch
Confidence 998 99999999999999999999999999999999999998873
|
|
| >cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-48 Score=368.36 Aligned_cols=225 Identities=27% Similarity=0.504 Sum_probs=211.5
Q ss_pred EEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCCCHHHHHH
Q 014285 70 AEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALD 149 (427)
Q Consensus 70 i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 149 (427)
++++.+++|++.||.++.++.+.++.++|+|+|++|.+||||+
T Consensus 1 i~~~~~~~p~~~~~~~~~~~~~~~~~~iv~l~~~~G~~G~Ge~------------------------------------- 43 (229)
T cd00308 1 VEVYAVRLPTSRPFYLAGGTADTNDTVLVKLTTDSGVVGWGEV------------------------------------- 43 (229)
T ss_pred CEEEEEEeecCCceEecCceEeeceeEEEEEEECCCCcchhhH-------------------------------------
Confidence 4678899999999999999999999999999999999999999
Q ss_pred HHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEecc
Q 014285 150 EIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVG 228 (427)
Q Consensus 150 ~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG 228 (427)
++||||||||+.||.+|+|||+|+||. ++++|+|.+
T Consensus 44 --------------~~aid~Al~Dl~gk~~~~pl~~llgg~~~~~v~~~~~----------------------------- 80 (229)
T cd00308 44 --------------ISGIDMALWDLAAKALGVPLAELLGGGSRDRVPAYGS----------------------------- 80 (229)
T ss_pred --------------HHHHHHHHHHHhHhHcCCcHHHHcCCCCCCceeccHH-----------------------------
Confidence 689999999999999999999999996 788998765
Q ss_pred CCchhhHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeE
Q 014285 229 RNITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISV 307 (427)
Q Consensus 229 ~~~~~d~~~l~~ir~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPI 307 (427)
+++++++|+. ++++.|++|||++|++++|+++++.|+++++ .|||||++++|++++++|++ .+++||
T Consensus 81 ------~~~i~~lr~~~g~~~~l~lDaN~~~~~~~a~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~L~~----~~~~pI 148 (229)
T cd00308 81 ------IERVRAVREAFGPDARLAVDANGAWTPKEAIRLIRALEKYGL--AWIEEPCAPDDLEGYAALRR----RTGIPI 148 (229)
T ss_pred ------HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCC--CeEECCCCccCHHHHHHHHh----hCCCCE
Confidence 7889999995 6899999999999999999999999999987 59999999999999999986 689999
Q ss_pred EecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcceec
Q 014285 308 VADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVN 386 (427)
Q Consensus 308 a~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e 386 (427)
++||++.+..++.++++.+++|++|+|++++| ++++++++++|+++|+++++|+++||+++.++++|++++++|..+.|
T Consensus 149 a~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~~s~i~~~a~~hlaa~~~~~~~~e 228 (229)
T cd00308 149 AADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLESSIGTAAALHLAAALPNDRAIE 228 (229)
T ss_pred EeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEeecCCCCCHHHHHHHHHHHHhCCCchhhc
Confidence 99999999999999999999999999999997 99999999999999999999999999999999999999999876543
|
Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase. |
| >PRK02901 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-43 Score=344.20 Aligned_cols=280 Identities=24% Similarity=0.326 Sum_probs=230.4
Q ss_pred EEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCCCHHHHHHH
Q 014285 71 EGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDE 150 (427)
Q Consensus 71 ~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 150 (427)
+...|++||+ .....++.|+.++++ |-.||||.+|++.|+.+ ++ ..+
T Consensus 13 ~~~~~~~p~~----~~~~~~~~r~~~~~~-----~~~~w~e~~p~~~~~~~--~~---~~~------------------- 59 (327)
T PRK02901 13 RAHVVALPMR----VRFRGITVREAVLIE-----GPAGWGEFSPFLEYDPA--EA---AAW------------------- 59 (327)
T ss_pred cCeEEecccc----cccCCcceeEEEEEe-----cCCceEEecCCCCCCHH--HH---HHH-------------------
Confidence 3456778887 344567889999988 88899999999887652 11 111
Q ss_pred HHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC-
Q 014285 151 IARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR- 229 (427)
Q Consensus 151 l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~- 229 (427)
..+++|.|- .|-| ...+++||+|.+++..+++++.+.++++ .||+++|+|+|.
T Consensus 60 ------------~~~~~~~~~-------~~~~-----~~~r~~vp~~~tv~~~~~e~~~~~~~~~--~G~~~~KvKVg~~ 113 (327)
T PRK02901 60 ------------LASAIEAAY-------GGPP-----PPVRDRVPVNATVPAVDAAQVPEVLARF--PGCRTAKVKVAEP 113 (327)
T ss_pred ------------HHHHHHhhh-------ccCC-----cccCCeEEeeEEeCCCCHHHHHHHHHHh--CCCCEEEEEECCC
Confidence 123444431 0111 1336889999998888888877666554 699999999974
Q ss_pred --CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHh-hhCCCCCceEeCCCCCCChhhHHHHHHhhccccCC
Q 014285 230 --NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKL-NDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGI 305 (427)
Q Consensus 230 --~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L-~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~i 305 (427)
++++|++++++||+ .||++.||||||++||+++|+++++.| +++++ .||||||+. +++|++|++ ++++
T Consensus 114 ~~~~~~Di~rv~avRe~lGpd~~LrvDAN~~ws~~~Ai~~~~~L~e~~~l--~~iEqP~~~--~~~la~Lr~----~~~v 185 (327)
T PRK02901 114 GQTLADDVARVNAVRDALGPDGRVRVDANGGWSVDEAVAAARALDADGPL--EYVEQPCAT--VEELAELRR----RVGV 185 (327)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHhhhccCc--eEEecCCCC--HHHHHHHHH----hCCC
Confidence 68899999999999 579999999999999999999999999 77887 599999974 899999986 7899
Q ss_pred eEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcce
Q 014285 306 SVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKY 384 (427)
Q Consensus 306 PIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~ 384 (427)
|||+||++.+..++.++++.+++|++|+|++++| ++++++ +|+++|+++++||++||+||+++++|+++++++..+
T Consensus 186 PIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GGit~~lk---iA~~~gi~v~v~s~~es~ig~aA~lhlaaalp~~~~ 262 (327)
T PRK02901 186 PIAADESIRRAEDPLRVARAGAADVAVLKVAPLGGVRAALD---IAEQIGLPVVVSSALDTSVGIAAGLALAAALPELDH 262 (327)
T ss_pred CEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCCHHHHHH---HHHHcCCcEEEeCCcccHHHHHHHHHHHHhCCCCCc
Confidence 9999999999999999999999999999999998 998887 579999999999999999999999999999998765
Q ss_pred -eccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 385 -VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 385 -~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+++++..++..++ .+++.++||++.+|+ +++|++.+
T Consensus 263 ~~gl~t~~~~~~dl-~~~l~~~dG~i~vp~-----v~~d~~~l 299 (327)
T PRK02901 263 ACGLATGGLFEEDV-ADPLLPVDGFLPVRR-----VTPDPARL 299 (327)
T ss_pred ccccCchhhhhhcc-CCCceeeCCEEeCCC-----CCCCHHHH
Confidence 4666544455666 677889999999998 89998765
|
|
| >PRK00077 eno enolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=323.32 Aligned_cols=297 Identities=23% Similarity=0.292 Sum_probs=226.7
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCC----------------CCCc-chHHHHH
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVP----------------LVTG-DQTKALV 127 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~----------------~~s~-~~~~~~~ 127 (427)
|+|++|..+.+- .+. .+++|.|+|+|++|.+|+|++.... .|.+ ....++.
T Consensus 2 ~~I~~v~~r~i~--------dsr----g~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~ 69 (425)
T PRK00077 2 SKIEDIIAREIL--------DSR----GNPTVEVEVTLEDGAFGRAAVPSGASTGEREAVELRDGDKSRYLGKGVLKAVE 69 (425)
T ss_pred CeEEEEEEEEEE--------cCC----CCeEEEEEEEECCCCEEEEEEeccCCCCcceeeecCCCCccccCCcCHHHHHH
Confidence 478988886642 122 2678999999999999999985321 1223 2233444
Q ss_pred HHH-HHhhHhcCCCCCCHHHHHHHHHHHC----CCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CC--ceeeeee
Q 014285 128 KVR-EACQFLRQSPPTTLNFALDEIARIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SN--SLSTAIT 199 (427)
Q Consensus 128 ~~~-~~~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~--~ip~~~~ 199 (427)
.++ .+.|.|+|+++.+++.+|+.|.+.. .+....++++|||||+||+.||..|+|||+||||. ++ ++|.|..
T Consensus 70 ~v~~~iap~LiG~d~~d~~~id~~l~~ldgt~~~~~~G~nAi~avsiAl~da~ak~~g~PLy~lLGG~~~~~~pvp~~n~ 149 (425)
T PRK00077 70 NVNEEIAPALIGLDALDQRAIDKAMIELDGTPNKSKLGANAILGVSLAVAKAAADSLGLPLYRYLGGPNAKVLPVPMMNI 149 (425)
T ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHhhCccccCccchHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCcccccceeEEE
Confidence 454 4899999999999999999997631 11122478999999999999999999999999996 33 4555443
Q ss_pred ecC----CC---HHH-H--------HHHHHHHhhcCCcEEEE---------ecc------CCchhhHHHHHHHHHh----
Q 014285 200 IPA----VS---PAE-A--------SELASKYCKLGFSTLKL---------NVG------RNITADFDVLQAIHAV---- 244 (427)
Q Consensus 200 i~~----~~---~~~-~--------~~~~~~~~~~Gf~~iKl---------KiG------~~~~~d~~~l~~ir~~---- 244 (427)
++. .. ..+ | .+++.++..+||+.+|. ++| ++++.|.++|+.||+.
T Consensus 150 i~GG~ha~~~~~~qe~~i~p~~~~~~~ea~~~~~~~~~~lK~~l~~~g~~~~vGdeGg~~p~~~~~~e~l~~lreAi~~a 229 (425)
T PRK00077 150 INGGAHADNNVDIQEFMIMPVGAPSFKEALRMGAEVFHTLKKVLKEKGLSTAVGDEGGFAPNLKSNEEALDLILEAIEKA 229 (425)
T ss_pred EcccccccCchhhhHhhcCCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCcCCcCCCccchHHHHHHHHHHHHHh
Confidence 321 11 111 1 13333444566888886 355 3567899999999984
Q ss_pred ----CCCcEEEEeCC-------CC-------CCHHHHHHHHHHh-hhCCCCCceEeCCCCCCChhhHHHHHHhhcccc--
Q 014285 245 ----HPHCSFILDAN-------EG-------YTSEEAVEVLGKL-NDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTY-- 303 (427)
Q Consensus 245 ----~~~~~L~vDAN-------~~-------~s~~~A~~~l~~L-~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~-- 303 (427)
|+++.|+||+| +. |+++++.+++..+ ++|++ .|||||++++|++++++|++ ++
T Consensus 230 g~~~G~di~l~lD~aas~~~~~~~y~~~~~~~s~~e~~~~~~~l~e~y~i--~~iEdPl~~~D~~g~~~L~~----~~~~ 303 (425)
T PRK00077 230 GYKPGEDIALALDCAASEFYKDGKYVLEGEGLTSEEMIDYLAELVDKYPI--VSIEDGLDENDWEGWKLLTE----KLGD 303 (425)
T ss_pred cCCCCCceEEEEehhhhhcccCCeeeccCCcCCHHHHHHHHHHHHhhCCc--EEEEcCCCCccHHHHHHHHH----hcCC
Confidence 68899999993 43 5778888776665 56886 59999999999999999986 55
Q ss_pred CCeEEecCC-CCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEE-cccCchhHHHHHHHHHHhhc
Q 014285 304 GISVVADES-CRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMI-DGMIETRLATGFALHLAAGL 379 (427)
Q Consensus 304 ~iPIa~dE~-~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~-~s~~es~ig~~a~~hlaaal 379 (427)
.+||++||. +.++.+++++++.+++|++++|++++| ++++++++++|+++|+.+++ |++.|++.+..+.+|++.+.
T Consensus 304 ~ipI~gdE~~~t~~~~~~~~i~~~a~d~v~ik~~~~GGitea~~ia~lA~~~gi~~~vsh~sgEt~d~~~a~lava~~~ 382 (425)
T PRK00077 304 KVQLVGDDLFVTNTKRLKKGIEKGAANSILIKVNQIGTLTETLDAIELAKRAGYTAVVSHRSGETEDTTIADLAVATNA 382 (425)
T ss_pred CCeEEcCCCccCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEeCCCCcchHHHHHHHHHHhCC
Confidence 699999997 467999999999999999999999998 99999999999999998766 88889999887777776654
|
|
| >cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=316.38 Aligned_cols=281 Identities=25% Similarity=0.335 Sum_probs=219.9
Q ss_pred eeEEEEEEEEcCCceEEEEeecCC----------------CCCcc-hHHHHHHHH-HHhhHhcCCCCCCHHHHHHHHHHH
Q 014285 93 VENVAIRVELSNGCVGWGEVAVVP----------------LVTGD-QTKALVKVR-EACQFLRQSPPTTLNFALDEIARI 154 (427)
Q Consensus 93 ~~~vlV~v~t~~G~~G~GE~~~~~----------------~~s~~-~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~l~~~ 154 (427)
.++|.|+|+|++|.+|+|++.... .|+++ ...++..++ .+.|.|+|+++.+++.+++.|.+.
T Consensus 13 ~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d~~dq~~id~~l~~~ 92 (408)
T cd03313 13 NPTVEVEVTTEDGGVGRAAVPSGASTGEHEAVELRDGDKSRYLGKGVLKAVKNVNEIIAPALIGMDVTDQRAIDKLLIEL 92 (408)
T ss_pred CceEEEEEEECCCCEEEEeecCCCCCCcceeeecCCCCcccccCCcHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHh
Confidence 578999999999999999986421 13442 233444454 488999999999999999999753
Q ss_pred C----CCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCC-Cceeeee--eecC-----C--C-------H--HHHHHH
Q 014285 155 L----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGAS-NSLSTAI--TIPA-----V--S-------P--AEASEL 211 (427)
Q Consensus 155 ~----~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~-~~ip~~~--~i~~-----~--~-------~--~~~~~~ 211 (427)
. .+....++++|||||+||+.||..|+|||++|||.. .++|++. .++. + + | ..+.++
T Consensus 93 dgt~~~~~~G~nAi~avsiAl~da~A~~~g~PLy~~Lgg~~~~~lpvp~~nvi~GG~ha~~~~~iqe~~i~p~~~~~~~e 172 (408)
T cd03313 93 DGTPNKSKLGANAILGVSLAVAKAAAAALGLPLYRYLGGLAAYVLPVPMFNVINGGAHAGNKLDFQEFMIVPVGAPSFSE 172 (408)
T ss_pred cCCCcccccchHHHHHHHHHHHHHHHHHcCCcHHHHhcCCCCcccceeeEEEecCcccccCccccccccccccCccCHHH
Confidence 1 122235789999999999999999999999999964 4555543 2221 0 1 1 122345
Q ss_pred HHHHhhcCCcEEE-----------Eecc------CCchhhHHHHHHHHH-h-------CCCcEEEEeC------------
Q 014285 212 ASKYCKLGFSTLK-----------LNVG------RNITADFDVLQAIHA-V-------HPHCSFILDA------------ 254 (427)
Q Consensus 212 ~~~~~~~Gf~~iK-----------lKiG------~~~~~d~~~l~~ir~-~-------~~~~~L~vDA------------ 254 (427)
+.++..+||+.+| +++| ++++.|.++|+.+|+ + |+++.|++|+
T Consensus 173 a~~~~~~~~~~lK~~l~~~~g~~~~~vgdeGg~~p~~~~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~ 252 (408)
T cd03313 173 ALRMGAEVYHTLKKVLKKKGGLLATNVGDEGGFAPNLSSNEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYV 252 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhcCccccccccccCcCCCCCChHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcce
Confidence 5666778898888 3333 356789999988887 4 5689999999
Q ss_pred -----CCCCCHHHHHHHHHHh-hhCCCCCceEeCCCCCCChhhHHHHHHhhcccc--CCeEEecCC-CCCHHHHHHHHHc
Q 014285 255 -----NEGYTSEEAVEVLGKL-NDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTY--GISVVADES-CRSLNDVQKVMQE 325 (427)
Q Consensus 255 -----N~~~s~~~A~~~l~~L-~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~--~iPIa~dE~-~~~~~~~~~ll~~ 325 (427)
|+.||+++|+++++.| ++|++ .|||||++++|++++++|++ ++ ++||++||. +.++.+++++++.
T Consensus 253 ~~~~~~~~~t~~eai~~~~~l~e~~~i--~~iEdPl~~~D~eg~~~L~~----~~g~~ipi~gdE~~~~~~~~~~~~i~~ 326 (408)
T cd03313 253 YDSDEGKKLTSEELIDYYKELVKKYPI--VSIEDPFDEDDWEGWAKLTA----KLGDKIQIVGDDLFVTNPERLKKGIEK 326 (408)
T ss_pred eccCCCcccCHHHHHHHHHHHHHhCCc--EEEEeCCCCcCHHHHHHHHH----hcCCCCeEEcCCcccCCHHHHHHHHHh
Confidence 4558889999999887 46886 59999999999999999986 44 899999995 5789999999999
Q ss_pred CCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEE-cccCchhHHHHHHHHHHhhcCC
Q 014285 326 NLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMI-DGMIETRLATGFALHLAAGLGC 381 (427)
Q Consensus 326 ~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~-~s~~es~ig~~a~~hlaaal~~ 381 (427)
++++++++|++++| ++++++++++|+++|+++++ |++.|+..... +|++.++++
T Consensus 327 ~a~d~v~ik~~~iGGite~~~ia~lA~~~G~~~~~sh~sget~d~~~--adlava~~~ 382 (408)
T cd03313 327 KAANALLIKVNQIGTLTETIEAIKLAKKNGYGVVVSHRSGETEDTFI--ADLAVALGA 382 (408)
T ss_pred CCCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEccCCCchhHHHHH--HHHHHHhCc
Confidence 99999999999998 99999999999999999987 77778877544 466655554
|
The reaction is facilitated by the presence of metal ions. |
| >TIGR01060 eno phosphopyruvate hydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=315.53 Aligned_cols=282 Identities=23% Similarity=0.301 Sum_probs=215.6
Q ss_pred eeEEEEEEEEcCCceEEEEeecCCC----------------CCc-chHHHHHHHH-HHhhHhcCCCCCCHHHHHHHHHHH
Q 014285 93 VENVAIRVELSNGCVGWGEVAVVPL----------------VTG-DQTKALVKVR-EACQFLRQSPPTTLNFALDEIARI 154 (427)
Q Consensus 93 ~~~vlV~v~t~~G~~G~GE~~~~~~----------------~s~-~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~l~~~ 154 (427)
.++|.|+|+|++|.+|++++..... |.+ ....++..++ .+.|.|+|+++.+++.+|+.|.+.
T Consensus 15 ~ptvev~v~~~~g~~g~~~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d~~d~~~id~~l~~~ 94 (425)
T TIGR01060 15 NPTVEVEVILEDGTFGRAAVPSGASTGEREALELRDGDKKRYLGKGVLKAVENVNDIIAPALIGMDAFDQREIDQIMIEL 94 (425)
T ss_pred CceEEEEEEECCCCEEEEeccCCCCCCcceeeeccCCCccccCCcCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 5789999999999999999854211 112 1223444454 478999999999999999999763
Q ss_pred --CCC--ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeee----cC--C---CHHHHH---------HH
Q 014285 155 --LPG--SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITI----PA--V---SPAEAS---------EL 211 (427)
Q Consensus 155 --~~g--~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i----~~--~---~~~~~~---------~~ 211 (427)
.++ ....++++|||||+||+.||..|+|||+||||. ++++|++... +. . +.+++. ++
T Consensus 95 d~t~~~~~~G~nAi~avs~Al~da~ak~~g~Ply~lLGG~~~~~lPvp~~n~i~GG~~a~~~~~~qe~~i~p~~a~~~~e 174 (425)
T TIGR01060 95 DGTPNKSKLGANAILGVSMAVAKAAAKSLGLPLYRYLGGKNAYVLPVPMMNIINGGAHADNNLDFQEFMIMPVGAKSFRE 174 (425)
T ss_pred CCcCCcchHHHHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCCceeeEEEEeecccccccCccCHHHHhccccchHHHHH
Confidence 111 122468999999999999999999999999996 5677776442 11 1 334321 22
Q ss_pred HHHHhhcCCcEEE--Ee-------cc------CCch---hhHHHH-HHHHH----hCCCcEEEEeCCCC-----------
Q 014285 212 ASKYCKLGFSTLK--LN-------VG------RNIT---ADFDVL-QAIHA----VHPHCSFILDANEG----------- 257 (427)
Q Consensus 212 ~~~~~~~Gf~~iK--lK-------iG------~~~~---~d~~~l-~~ir~----~~~~~~L~vDAN~~----------- 257 (427)
+.+...+||+.+| +| +| ++++ ++++++ +++++ .++++.|++|+|.+
T Consensus 175 ~~~~~~~g~~~lK~~l~~~~~~~~vGdeGg~~p~~~~~~~~l~~~~~ai~~~~~~~G~di~l~lD~aas~~~~~~~~~y~ 254 (425)
T TIGR01060 175 ALRMGAEVFHALKKLLKEKGLATGVGDEGGFAPNLASNEEALEIISEAIEKAGYKPGEDVALALDCAASEFYDEEDGKYV 254 (425)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcccccCCCccccHHHHHHHHHHHHHHhhccCCceEEEEEccccccccccCceee
Confidence 3333347899999 44 45 2222 334433 44444 35789999999732
Q ss_pred -------CCHHHHHHHHHH-hhhCCCCCceEeCCCCCCChhhHHHHHHhhcccc--CCeEEecCCC-CCHHHHHHHHHcC
Q 014285 258 -------YTSEEAVEVLGK-LNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTY--GISVVADESC-RSLNDVQKVMQEN 326 (427)
Q Consensus 258 -------~s~~~A~~~l~~-L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~--~iPIa~dE~~-~~~~~~~~ll~~~ 326 (427)
||+++|+++++. +++|++ .|||||++++|++++++|++ ++ ++||++||++ .++.+++++++.+
T Consensus 255 ~~~~~~~~s~~eai~~~~~lle~~~i--~~iEdPl~~~D~~~~~~L~~----~~~~~ipI~gDE~~~t~~~~~~~~i~~~ 328 (425)
T TIGR01060 255 YKGENKQLTSEEMIEYYKELVEKYPI--VSIEDGLSEEDWEGWAELTK----ELGDKVQIVGDDLFVTNTEILREGIEMG 328 (425)
T ss_pred ecCcccccCHHHHHHHHHHHHhcCCc--EEEEcCCCcccHHHHHHHHH----hcCCCCeEEeCCCcccCHHHHHHHHHhC
Confidence 467799999995 678886 59999999999999999986 56 7999999985 4699999999999
Q ss_pred CCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEE-EcccCchhHHHHHHHHHHhhcC
Q 014285 327 LASVVNIKLAKFG-VLGTLQIIKATRKSGLHLM-IDGMIETRLATGFALHLAAGLG 380 (427)
Q Consensus 327 a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~-~~s~~es~ig~~a~~hlaaal~ 380 (427)
++|++++|++++| ++++++++++|+++|++++ .|++.|++++..|.+|++.+.+
T Consensus 329 a~d~v~ik~~~iGGItea~~ia~lA~~~Gi~~vv~h~sgEt~d~~~a~lava~~~~ 384 (425)
T TIGR01060 329 VANSILIKPNQIGTLTETLDAVELAKKAGYTAVISHRSGETEDTTIADLAVALNAG 384 (425)
T ss_pred CCCEEEecccccCCHHHHHHHHHHHHHcCCcEEEecCCcccHHHHHHHHHHHhCcC
Confidence 9999999999998 9999999999999999955 5888899999988888877654
|
Alternate name: enolase |
| >PLN00191 enolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-31 Score=270.39 Aligned_cols=297 Identities=20% Similarity=0.252 Sum_probs=225.4
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCc----------eEEEEeecCCC----CCc-chHHHHHHH
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGC----------VGWGEVAVVPL----VTG-DQTKALVKV 129 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~----------~G~GE~~~~~~----~s~-~~~~~~~~~ 129 (427)
++|++|+.+.+- .+. ..++|.|+|+|++|. +|++|+..++. |.+ ....++..+
T Consensus 26 ~~I~~v~~r~il--------dsr----G~PtVeveV~~~~G~~~a~~psgastG~~Ea~elrd~~~~~~g~gv~~Av~~v 93 (457)
T PLN00191 26 ATITKVKARQII--------DSR----GNPTVEVDLHTSKGMFRAAVPSGASTGIYEALELRDGDKDYLGKGVLKAVKNV 93 (457)
T ss_pred CeeeEEEEEEEE--------cCC----CCeEEEEEEEECCCCEEEEeccCCCCCcceeeeccCCCcccCCccHHHHHHHH
Confidence 579999887642 222 267899999999998 78888865422 333 344455555
Q ss_pred HH-HhhHhcCCCCCCHHHHHHHHHHHC----CCChhhhHHHHHHHHHHHHHHhhCCCChhhhh---CCC-CCceeeeee-
Q 014285 130 RE-ACQFLRQSPPTTLNFALDEIARIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLF---GGA-SNSLSTAIT- 199 (427)
Q Consensus 130 ~~-~~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Ll---gg~-~~~ip~~~~- 199 (427)
++ +.|.|+|.++.+++.+++.|.+.. .+....++..|++||+|++.|+..|+|||++| ||. ...+|++..
T Consensus 94 ~~~ia~~LiG~~~~dq~~iD~~l~~ldgt~nk~~lGanailavS~A~a~AaA~~~~~PLy~~l~~~gg~~~~~lP~p~~n 173 (457)
T PLN00191 94 NEIIAPALIGMDPTDQTQIDNFMLELDGTPNKGKLGANAILAVSLAVCKAGAAEKGVPLYKHIADLAGNKKLVLPVPAFN 173 (457)
T ss_pred HHHHHHHHcCCChhhHHHHHHHHHHccCCCCccccchhHHHHHHHHHHHHHHHHcCCcHHHHHHhhCCCCCccccceeEE
Confidence 44 899999999999999998887542 12234678999999999999999999999999 764 456776541
Q ss_pred ---ec----------------C--CCHHHHHHH-------HHHHhhc--CCcEEEEecc------CCchhhHHHHHHHHH
Q 014285 200 ---IP----------------A--VSPAEASEL-------ASKYCKL--GFSTLKLNVG------RNITADFDVLQAIHA 243 (427)
Q Consensus 200 ---i~----------------~--~~~~~~~~~-------~~~~~~~--Gf~~iKlKiG------~~~~~d~~~l~~ir~ 243 (427)
.+ . .+..+..+. ..+.++. |... ..+| ++++.+.+.|+.|++
T Consensus 174 iinGG~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~--~~vgdeGg~ap~~~~~~eal~ll~e 251 (457)
T PLN00191 174 VINGGSHAGNKLAMQEFMILPVGASSFKEAMQMGSEVYHHLKAVIKKKYGQDA--CNVGDEGGFAPNIQDNKEGLELLKE 251 (457)
T ss_pred eecCccccccccchheeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCc--CccCCCCCcCCCCCCHHHHHHHHHH
Confidence 11 1 133332221 1121121 4321 1233 245666676766665
Q ss_pred ----hC--CCcEEEEeCCCC--------C---------------CHHHHHHHHHHhhh-CCCCCceEeCCCCCCChhhHH
Q 014285 244 ----VH--PHCSFILDANEG--------Y---------------TSEEAVEVLGKLND-MGVIPVLFEQPVHRDDWSGLH 293 (427)
Q Consensus 244 ----~~--~~~~L~vDAN~~--------~---------------s~~~A~~~l~~L~~-~~l~~~~iEqP~~~~d~~~~~ 293 (427)
++ +++.|.+|+..+ | |.++++++++.|.+ |++ .|||||++.+||++++
T Consensus 252 Ai~~ag~~~~i~i~lD~Aase~~~~~~~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y~I--~~IEDPl~~~D~eg~~ 329 (457)
T PLN00191 252 AIEKAGYTGKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYPI--VSIEDPFDQDDWEHWA 329 (457)
T ss_pred HHHHcCCCCceEEEeehhhhhhcccCCceEeeccccCCCcccccCHHHHHHHHHHHhhcCCc--EEEECCCCcccHHHHH
Confidence 22 579999998433 4 88999999999755 876 5999999999999999
Q ss_pred HHHHhhccccCCeEEecCCC-CCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcc-cCchhHHHH
Q 014285 294 DVSNFARDTYGISVVADESC-RSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDG-MIETRLATG 370 (427)
Q Consensus 294 ~L~~~~r~~~~iPIa~dE~~-~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s-~~es~ig~~ 370 (427)
+|++ ++.+||++||++ .++.+++++++.++++++++|++++| ++++++++++|+++|+++|+++ +.||+++..
T Consensus 330 ~Lt~----~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGITea~~~a~lA~~~G~~~~ishrsgET~d~~~ 405 (457)
T PLN00191 330 KLTS----LEDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESIEAVKMSKAAGWGVMTSHRSGETEDSFI 405 (457)
T ss_pred HHHc----cCCCcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHCCCEEEeCCCCccchHHHH
Confidence 9986 688999999986 88999999999999999999999998 9999999999999999999965 889999999
Q ss_pred HHHHHHhhcCC
Q 014285 371 FALHLAAGLGC 381 (427)
Q Consensus 371 a~~hlaaal~~ 381 (427)
|.+|++++.+.
T Consensus 406 Adlava~~~~~ 416 (457)
T PLN00191 406 ADLAVGLATGQ 416 (457)
T ss_pred HHHHHHhCCCc
Confidence 99999987653
|
|
| >PTZ00081 enolase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=251.34 Aligned_cols=296 Identities=22% Similarity=0.292 Sum_probs=215.6
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCc----------eEEEEeecCCC-----CCc-chHHHHHH
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGC----------VGWGEVAVVPL-----VTG-DQTKALVK 128 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~----------~G~GE~~~~~~-----~s~-~~~~~~~~ 128 (427)
|+|++|+.+.+- .+.| +++|.|+|+|++|. +|++|+..++. |.+ ....++..
T Consensus 2 ~~I~~v~~r~i~--------dSrg----~ptvev~v~~~~G~~~a~~psgastG~~Ea~elrd~~~~~y~g~gv~~Av~~ 69 (439)
T PTZ00081 2 STIKSIKAREIL--------DSRG----NPTVEVDLTTEKGVFRAAVPSGASTGIYEALELRDGDKSRYLGKGVLKAVEN 69 (439)
T ss_pred cEEEEEEEEEEe--------cCCC----CceEEEEEEECCCCEEEecccCCCCceeeEeeccCCCccccCCccHHHHHHH
Confidence 689999886642 2222 57899999999998 99999865432 333 34455555
Q ss_pred HHH-HhhHhcCCCCCCHHHHHHHHHHHCCC----------ChhhhHHHHHHHHHHHHHHhhCCCChhhhh---CCC---C
Q 014285 129 VRE-ACQFLRQSPPTTLNFALDEIARILPG----------SEFASVRAGVEMALIDAVANSIDIPLWRLF---GGA---S 191 (427)
Q Consensus 129 ~~~-~~~~l~g~~~~~~~~~~~~l~~~~~g----------~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Ll---gg~---~ 191 (427)
+++ +.|.|+|+++.+++.+++.|.+.+.| ....++..|++||+|++.|+..|+|||++| |+. .
T Consensus 70 v~~~i~~~LiG~d~~dq~~iD~~l~~~ldgt~n~~~~~ks~lGanailavS~A~a~AaA~~~~~PLy~yL~~~~g~~~~~ 149 (439)
T PTZ00081 70 VNEIIAPALIGKDVTDQKKLDKLMVEQLDGTKNEWGWCKSKLGANAILAVSMAVARAAAAAKGVPLYKYLAQLAGKPTDK 149 (439)
T ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHhccCCcccccccccccchHHHHHHHHHHHHHHHHHcCCcHHHHHHHhcCCccCC
Confidence 544 79999999999999999988773222 223678999999999999999999999999 554 1
Q ss_pred Cce--eeeeeec------------------C--CCHHHHHHH-------HHHHhhc--CCcEEEEecc------CCchhh
Q 014285 192 NSL--STAITIP------------------A--VSPAEASEL-------ASKYCKL--GFSTLKLNVG------RNITAD 234 (427)
Q Consensus 192 ~~i--p~~~~i~------------------~--~~~~~~~~~-------~~~~~~~--Gf~~iKlKiG------~~~~~d 234 (427)
..+ |.+..+. . .+..+..+. .++.++. |... .-+| ++++.+
T Consensus 150 ~~lP~P~~niinGG~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~--~~vgdeGgfap~~~~~ 227 (439)
T PTZ00081 150 FVLPVPCFNVINGGKHAGNKLAFQEFMIAPVGAPSFKEALRMGAEVYHSLKSVIKKKYGLDA--TNVGDEGGFAPNIKDP 227 (439)
T ss_pred ccccceeEEeccCcccccccccceEEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCc--cccccCCCcCCCCCCH
Confidence 233 4443211 1 133332221 1122221 4321 1233 234445
Q ss_pred HHHHHHHHH----hC--CCcEEEEeCCC------------------------CCCHHHHHHHH-HHhhhCCCCCceEeCC
Q 014285 235 FDVLQAIHA----VH--PHCSFILDANE------------------------GYTSEEAVEVL-GKLNDMGVIPVLFEQP 283 (427)
Q Consensus 235 ~~~l~~ir~----~~--~~~~L~vDAN~------------------------~~s~~~A~~~l-~~L~~~~l~~~~iEqP 283 (427)
.+.++.+++ ++ +++.|.+|+.. .+|.+|.++++ +.+++|++ .|||||
T Consensus 228 eeal~ll~eAi~~ag~~~~v~i~lD~Aase~~~~~~~~Y~~~f~~~~~~~~~~~s~~eli~~~~~~l~~y~I--~~IEDP 305 (439)
T PTZ00081 228 EEALDLLVEAIKKAGYEGKVKICMDVAASEFYDKEKKVYDLDFKNPNNDKSNKLTGEELVELYLDLVKKYPI--VSIEDP 305 (439)
T ss_pred HHHHHHHHHHHHHcCCcCceEEEEehhhhhhhhccCCceeeeeccccCccccccCHHHHHHHHHHHHhcCCc--EEEEcC
Confidence 555555544 33 46888888732 35777777755 57789986 599999
Q ss_pred CCCCChhhHHHHHHhhcccc--CCeEEecCC-CCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEE
Q 014285 284 VHRDDWSGLHDVSNFARDTY--GISVVADES-CRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMI 359 (427)
Q Consensus 284 ~~~~d~~~~~~L~~~~r~~~--~iPIa~dE~-~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~ 359 (427)
++.+||+++++|++ ++ ++||++||. ++++.+++++++.++++++++|++++| ++++++++++|+++|+++++
T Consensus 306 l~~~D~eg~~~Lt~----~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~i~iKvnqiGGITe~l~~a~lA~~~Gi~~ii 381 (439)
T PTZ00081 306 FDQDDWEAYAKLTA----AIGQKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKVNQIGTVTEAIEAAKLAQKNGWGVMV 381 (439)
T ss_pred CCcccHHHHHHHHH----hhCCCceEEcCCcccCCHHHHHHHHHhCCCCEEEeccccccCHHHHHHHHHHHHHcCCcEEE
Confidence 99999999999987 56 899999997 577999999999999999999999998 99999999999999999999
Q ss_pred cccC-chhHHHHHHHHHHhhcCCc
Q 014285 360 DGMI-ETRLATGFALHLAAGLGCI 382 (427)
Q Consensus 360 ~s~~-es~ig~~a~~hlaaal~~~ 382 (427)
++.. |+. ..+++|||.++++.
T Consensus 382 shrsgETe--d~~iadLAVa~~~~ 403 (439)
T PTZ00081 382 SHRSGETE--DTFIADLVVGLGTG 403 (439)
T ss_pred eCCCchhH--HHHHHHHHHHcCCC
Confidence 6655 664 56788999998775
|
|
| >COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-28 Score=219.42 Aligned_cols=275 Identities=20% Similarity=0.222 Sum_probs=211.7
Q ss_pred EEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHH-H-HHHHHHHhhHhcCCCCCCHHH
Q 014285 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTK-A-LVKVREACQFLRQSPPTTLNF 146 (427)
Q Consensus 69 ~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~-~-~~~~~~~~~~l~g~~~~~~~~ 146 (427)
+..+|+|++|+...+..-...+..|++++|++.. ++..||||.+|+|++|.++.+ + ...+.++-..+.|..+.+
T Consensus 3 sa~lYry~iPmdsgviLR~r~Lk~RdGl~V~l~~-~~r~gwGEIaPLPgFSqETleqAq~~a~~wl~~W~~g~~~~d--- 78 (321)
T COG1441 3 SAQLYRYQIPMDAGVILRDRRLKTRDGLYVCLRE-GEREGWGEIAPLPGFSQETLEQAQEQALAWLNNWLAGHDPLD--- 78 (321)
T ss_pred ccceEEEecccccceeeehhhhcccccEEEEEee-CCcccccccCCCCCcCHHHHHHHHHHHHHHHHHHHccCCccc---
Confidence 4578999999999888888888999999999985 678999999999999875432 1 122334455566654432
Q ss_pred HHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEe
Q 014285 147 ALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLN 226 (427)
Q Consensus 147 ~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlK 226 (427)
..+||+.||+.||+..+++-... .+....-| +..+||+++......+ .|-+.-|+|
T Consensus 79 -----------~~~PSVAFGlScA~aEl~~~Lp~-------~~nY~~AP----LC~GDPDeL~~~L~~m--pGeKvAKvK 134 (321)
T COG1441 79 -----------PQMPSVAFGLSCALAELKGTLPE-------AANYRVAP----LCTGDPDELYLKLADM--PGEKVAKVK 134 (321)
T ss_pred -----------ccCchhHHHHHHHHHHHhhhchh-------hcCccccc----CcCCCHHHHHHHHhcC--Ccceeeeee
Confidence 34689999999999988774421 11112222 3457899986655443 689999999
Q ss_pred ccC-CchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhh-CCCCCceEeCCCCCCChhhHHHHHHhhccccC
Q 014285 227 VGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLND-MGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG 304 (427)
Q Consensus 227 iG~-~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~-~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~ 304 (427)
+|. ..-.|=-.+..+.+.-||..||+|||.+||+..|..|++-... +.-+|.|+||||+.. ++-+++++ .++
T Consensus 135 VGlYEa~RDGmivnllLEaiPDL~LRLDANRaWtp~Ka~~FAkyV~p~~R~RIaFLEEPCkt~--aeSr~Fa~----eTg 208 (321)
T COG1441 135 VGLYEAVRDGMIVNLLLEAIPDLHLRLDANRAWTPLKAQQFAKYVNPDYRSRIAFLEEPCKTR--AESRAFAR----ETG 208 (321)
T ss_pred eeeeeccccchHHHHHHHhCccceeeecccccCChHHHHHHHHhcCHHHHHHHHHHhcccCCh--HHHHHHHH----hcC
Confidence 995 3345555677777888999999999999999999999998763 333457999999853 34455664 799
Q ss_pred CeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhc
Q 014285 305 ISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGL 379 (427)
Q Consensus 305 iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal 379 (427)
|.||.||++... ||.-- ....+..|++||+.+| +..+.+.++.|+++|+..+++|.+||++|+...+.+|+-+
T Consensus 209 IAIAWDEs~rea-dF~~e-~e~gv~avVIKPTL~GSl~r~~eli~qAh~lGl~AVISSSiESSLGLtQLARiA~~l 282 (321)
T COG1441 209 IAIAWDESLREA-DFAFE-AEPGVRAVVIKPTLTGSLQRVRELVQQAHALGLTAVISSSIESSLGLTQLARIAAWL 282 (321)
T ss_pred eeEeecchhccc-ccccc-cCCCceEEEecccchhhHHHHHHHHHHHHhcCceeEeechhhhhcCHHHHHHHHHHh
Confidence 999999999874 44221 2346889999999999 9999999999999999999999999999999999888764
|
|
| >PF02746 MR_MLE_N: Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; InterPro: IPR013341 Mandelate racemase 5 | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=166.21 Aligned_cols=115 Identities=26% Similarity=0.463 Sum_probs=98.8
Q ss_pred EEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHH-HhhHhcCCCCCCHHH
Q 014285 68 QRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVRE-ACQFLRQSPPTTLNF 146 (427)
Q Consensus 68 ~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~-~~~~l~g~~~~~~~~ 146 (427)
.+++++.+++|++ ||++|.++.+.++.++|||+|++|++||||+.+.+. +. ......+.+ +.|.+.|+++.+++.
T Consensus 2 ~ev~v~~v~~~l~-Pf~~a~~t~~~~~~v~V~l~t~~G~~G~Ge~~~~~~-~~--~~~~~~~~~~l~~~l~g~~~~~~~~ 77 (117)
T PF02746_consen 2 IEVRVRHVPLPLK-PFKTARGTVSEREFVLVRLETDDGVVGWGEAFPSPG-TA--ETVASALEDYLAPLLIGQDPDDIED 77 (117)
T ss_dssp EEEEEEEEEEEEE-EEEETTEEEEEEEEEEEEEEETTSEEEEEEEESSSS-SH--HHHHHHHHHTHHHHHTTSBTTGHHH
T ss_pred EEEEEEEeccCcC-CEEeeCEEEEEeEEEEEEEEECCCCEEEEEeeCCcc-hh--HHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4678889999999 999999999999999999999999999999998654 22 122223344 789999999999999
Q ss_pred HHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhC
Q 014285 147 ALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFG 188 (427)
Q Consensus 147 ~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llg 188 (427)
+++.+++...+ .+.+++|||+||||+.||..|+|||+|||
T Consensus 78 ~~~~~~~~~~~--~~~a~aaid~AlwDl~gK~~g~Pl~~LlG 117 (117)
T PF02746_consen 78 IWQELYRLIKG--NPAAKAAIDMALWDLLGKIAGQPLYQLLG 117 (117)
T ss_dssp HHHHHHHHTSS--HHHHHHHHHHHHHHHHHHHHTSBHHHHTT
T ss_pred HHHHHHHhccc--hHHHHHHHHHHHHHHHHHHcCCCHHHHcC
Confidence 99999876554 46789999999999999999999999997
|
1.2.2 from EC (MR) and muconate lactonizing enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the N-terminal region of these proteins.; PDB: 2OX4_F 3T9P_A 2QQ6_A 3CYJ_C 3GY1_A 3S47_B 3RRA_B 3RR1_A 3STP_A 3T8Q_A .... |
| >PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.5e-21 Score=161.13 Aligned_cols=106 Identities=24% Similarity=0.366 Sum_probs=95.6
Q ss_pred cCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcceeccC
Q 014285 310 DESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLN 388 (427)
Q Consensus 310 dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~~ 388 (427)
||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++ +++|++++++|++++++++.+.|+
T Consensus 1 gE~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~i~~aa~~hlaaa~~~~~~~e~- 78 (111)
T PF13378_consen 1 GESLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESGIGLAASLHLAAALPNCDWLEY- 78 (111)
T ss_dssp STTSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSHHHHHHHHHHHHTSTTBSEEEE-
T ss_pred CCCCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCcHHHHHHHHHHHhcCCCCcccc-
Confidence 799999999999999999999999999997 99999999999999999999999 999999999999999999888887
Q ss_pred CCcccccCCCC---CceeeeCcEEecCC-CCCcccc
Q 014285 389 TPFLLSEDPFV---GGCEVSGAIYNFTN-ARGQGGF 420 (427)
Q Consensus 389 ~p~~~~~~~~~---~~~~~~~G~i~~p~-~pGlGve 420 (427)
|++. .+++. +++. +||++.+|+ +||||||
T Consensus 79 -~~~~-~dl~~~~~~p~~-~~G~v~vp~~~PGlGve 111 (111)
T PF13378_consen 79 -PYFE-EDLVTGPPEPLV-ENGRVTVPDDGPGLGVE 111 (111)
T ss_dssp -GGGT-HHSBSSSSSSEE-ETTEEEGGSSSSBTSBE
T ss_pred -cchh-hhhcCCCCCcee-ECCEEECCCCCCcccCC
Confidence 4432 45555 3556 999999999 9999997
|
... |
| >COG0148 Eno Enolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9e-18 Score=164.06 Aligned_cols=285 Identities=25% Similarity=0.301 Sum_probs=198.8
Q ss_pred eeEEEEEEEEcCCceEEEEeecCCC---------------CCc-chHHHHHHHHH-HhhHhcCCCCCCHHHHHHHHHHHC
Q 014285 93 VENVAIRVELSNGCVGWGEVAVVPL---------------VTG-DQTKALVKVRE-ACQFLRQSPPTTLNFALDEIARIL 155 (427)
Q Consensus 93 ~~~vlV~v~t~~G~~G~GE~~~~~~---------------~s~-~~~~~~~~~~~-~~~~l~g~~~~~~~~~~~~l~~~~ 155 (427)
.++|-|+|.|++|..|++-+...-. |.+ ....++..+++ +.|.|+|.+..++..+.+.|...-
T Consensus 18 npTVEveV~~~~g~~g~a~vPSGAStG~~EavElrdgd~ry~gkGV~~AV~nVn~~Iap~LiG~da~dQ~~ID~~lielD 97 (423)
T COG0148 18 NPTVEVEVTLEDGFGGRAAVPSGASTGEHEAVELRDGDSRYLGKGVLKAVANVNEIIAPALIGLDATDQALIDSLLIELD 97 (423)
T ss_pred CceEEEEEEEcCCCcceeecCCCCCCCCceeEEecCCccccccccHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHcc
Confidence 5789999999999988875432211 111 12234555554 789999999999988888776531
Q ss_pred ----CCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCC-Cc--eeeeeeec------------------C--CCHHHH
Q 014285 156 ----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGAS-NS--LSTAITIP------------------A--VSPAEA 208 (427)
Q Consensus 156 ----~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~-~~--ip~~~~i~------------------~--~~~~~~ 208 (427)
..+.-+++.-|+.||.--+.|..+|+|||+++||.+ .. +|+...+. . .+..+.
T Consensus 98 GT~Nks~lGaNailgVSlAvAkAAA~~l~~PLy~YlGG~~a~~lPvPm~NvinGG~HA~n~~d~QEFmI~p~ga~sf~ea 177 (423)
T COG0148 98 GTENKSKLGANAILGVSLAVAKAAAASLGIPLYRYLGGLNALVLPVPMMNVINGGAHADNNLDIQEFMIMPVGAESFKEA 177 (423)
T ss_pred CCCcccccccHHHHHHHHHHHHHHHHhcCCcHHHHhcCccccccccceeeeecccccCCCCccceeEEEeecChHHHHHH
Confidence 112346789999999999999999999999999974 33 44322221 1 122222
Q ss_pred HHH-------HHHH-hhcCCcEEEEecc---CCch---hhHHH-HHHHHHhC----CCcEEEEeCC-------C------
Q 014285 209 SEL-------ASKY-CKLGFSTLKLNVG---RNIT---ADFDV-LQAIHAVH----PHCSFILDAN-------E------ 256 (427)
Q Consensus 209 ~~~-------~~~~-~~~Gf~~iKlKiG---~~~~---~d~~~-l~~ir~~~----~~~~L~vDAN-------~------ 256 (427)
.+. ..++ .+.|..+-+=.-| ++++ +-++. ++++++++ .++.|.+|+- +
T Consensus 178 lr~~~ev~h~lk~~l~~~g~~t~vGDEGgfAP~l~~~eeald~i~~Aie~agy~~g~~i~~alD~Aasefy~~~~Y~~~~ 257 (423)
T COG0148 178 LRAGAEVFHHLKKLLKEKGLSTGVGDEGGFAPNLKSNEEALDILVEAIEEAGYEPGEDIALALDVAASEFYKDGKYVLEG 257 (423)
T ss_pred HHHHHHHHHHHHHHHhhcCccccccCCcccCCCCCccHHHHHHHHHHHHHhCCCCCcceeeeehhhhhhhccCCeeeecC
Confidence 111 1111 2334444311112 2333 33443 35677764 3589999983 2
Q ss_pred -CCCHHHHHHHHHHh-hhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecC-CCCCHHHHHHHHHcCCCcEEEe
Q 014285 257 -GYTSEEAVEVLGKL-NDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLASVVNI 333 (427)
Q Consensus 257 -~~s~~~A~~~l~~L-~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~l 333 (427)
.++.+|-++++..| ++|.+ .+||+|+.++||+++++|.+.+ ...+.|..|. -++++..+++-++.+..+.+.+
T Consensus 258 ~~~~~~e~i~~~~~Lv~~Ypi--vsiEDpl~E~Dweg~~~lt~~~--g~kvqivGDDLfvTN~~~l~~gi~~g~aNaiLI 333 (423)
T COG0148 258 ESLTSEELIEYYLELVKKYPI--VSIEDPLSEDDWEGFAELTKRL--GDKVQIVGDDLFVTNPKRLKKGIEKGAANAILI 333 (423)
T ss_pred cccCHHHHHHHHHHHHHhCCE--EEEcCCCCchhHHHHHHHHHhh--CCeEEEECCcceecCHHHHHHHHHhccCceEEE
Confidence 45777888887766 67875 5999999999999999999732 1237788887 5678888999999999999999
Q ss_pred CCCCcc-HHHHHHHHHHHHHcCCcEEEcccC-chhHHHHHHHHHHhhcCCcc
Q 014285 334 KLAKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAAGLGCIK 383 (427)
Q Consensus 334 k~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hlaaal~~~~ 383 (427)
||.++| +|++++.+++|+++|+..++++.. |+. -...+|+|.+++++.
T Consensus 334 K~NQIGTLTEt~~ai~~A~~~gy~~viSHRSGETe--D~tIAdLAVa~~agq 383 (423)
T COG0148 334 KPNQIGTLTETLEAINLAKDAGYTAVISHRSGETE--DTTIADLAVATNAGQ 383 (423)
T ss_pred echhcccHHHHHHHHHHHHHCCCeEEEecCCCCcc--cchHHHHHHHhCCCe
Confidence 999999 999999999999999999998754 432 235779998887653
|
|
| >PRK08350 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.9e-18 Score=162.74 Aligned_cols=272 Identities=16% Similarity=0.178 Sum_probs=190.6
Q ss_pred eeEEEEEEEEcCCceEEEEeecCC---CCCcchHHHHHHHHH-HhhHhcCCCCCCHHHHHHHHHHHCCC-----ChhhhH
Q 014285 93 VENVAIRVELSNGCVGWGEVAVVP---LVTGDQTKALVKVRE-ACQFLRQSPPTTLNFALDEIARILPG-----SEFASV 163 (427)
Q Consensus 93 ~~~vlV~v~t~~G~~G~GE~~~~~---~~s~~~~~~~~~~~~-~~~~l~g~~~~~~~~~~~~l~~~~~g-----~~~~~a 163 (427)
.++|-|+|+|++| .|.+-+..-. .|......++..+++ +.|.|+|.++.+...+.+.|.+. .| ...+++
T Consensus 18 nPTVEveV~~~~g-~gra~vPSD~d~~ry~~gV~~AV~nVn~~Iap~LiG~d~~dQ~~ID~~miel-DGT~nKs~lGaNA 95 (341)
T PRK08350 18 KYSVEVDVITDSG-FGRFAAPIDENPSLYIAEAHRAVSEVDEIIGPELIGFDASEQELIDSYLWEI-DGTEDFSHIGANT 95 (341)
T ss_pred CceEEEEEEECCc-EEEEEecCCCCcccccchHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-cCCccccccCchh
Confidence 5788999999998 7776665411 122223345566655 88999999999999888888652 22 233678
Q ss_pred HHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeee--eeecCCCHHHHH--HHHHHHhhcCCcEEEEeccCCchhhHHHH
Q 014285 164 RAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTA--ITIPAVSPAEAS--ELASKYCKLGFSTLKLNVGRNITADFDVL 238 (427)
Q Consensus 164 ~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~--~~i~~~~~~~~~--~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l 238 (427)
..|+.||..-+.|...|+|||++|||. ...+|+. .-+..++.+.|. .++-+. .+=|+.+|--+-.+.++-++.+
T Consensus 96 iLavS~A~akAaA~~~~~PLy~ylgg~~~~~lPvP~~NiiNGG~~EFmI~p~ea~~~-~ev~~~lk~il~~~~eeaL~ll 174 (341)
T PRK08350 96 ALAVSVAVAKAAANSKNMPLYSYIGGTFTTELPVPILEFAEDENFEYYVLVRDLMEI-TDVVDAVNKILENSKEVSLEGL 174 (341)
T ss_pred hHHHHHHHHHHHHHHcCCcHHHHhcCCCCCccCccceeeecCCceEEEECchHhhhh-HHHHHHHHHHHhhChHHHHHHH
Confidence 999999999999999999999999884 3345442 223222322221 000000 1112222211111445556654
Q ss_pred -HHHHHhC----CCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCC
Q 014285 239 -QAIHAVH----PHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESC 313 (427)
Q Consensus 239 -~~ir~~~----~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~ 313 (427)
++|.++| .|+.+.+|+...+|.+|-+ +.+++|.+ .+|| |+..+ +++++|++. ...+.|..|.-.
T Consensus 175 ~eAi~~aGy~~g~dv~~~lD~~~~~t~~eli---~l~~kYPI--vsIE-p~~E~--~gw~~lt~~---g~~iqiVGDDLf 243 (341)
T PRK08350 175 SKASEKAGDELGLEVALGIAQKREMETEKVL---NLVEDNNI--AYIK-PIGDE--ELFLELIAG---THGVFIDGEYLF 243 (341)
T ss_pred HHHHHHhCCCccccEEEeeccCCCCCHHHHH---HHHHHCCE--EEEE-cCCcc--hHHHHHHhc---CCceEEEccccc
Confidence 6777764 2699999998668988866 77788986 5999 99965 999999972 346889998866
Q ss_pred CCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccC-chhHHHHHHHHHHhhcCCcce
Q 014285 314 RSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAAGLGCIKY 384 (427)
Q Consensus 314 ~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hlaaal~~~~~ 384 (427)
.|-... +.++++.+.+||.++| +|++++.+++|+++|+.+++++.. |+ .-...+|||.+++++..
T Consensus 244 vTN~~~----~~~~~NaiLiK~NQIGTltEt~~ai~~A~~~g~~~vvSHRSGET--eD~~IAdLaVa~~agqI 310 (341)
T PRK08350 244 RTRNIL----DRRYYNALSIKPINLGTLTDLYNLVNDVKSERITPILAEAKYES--ADEALPHLAVGLRCPAM 310 (341)
T ss_pred ccChhH----hhCccceEEEeeccceeHHHHHHHHHHHHHcCCeEEeecCCCCC--cchhHHHHHHHhCCCcc
Confidence 554333 7889999999999999 999999999999999999998755 44 34568899999887643
|
|
| >PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5 | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-16 Score=120.64 Aligned_cols=66 Identities=29% Similarity=0.544 Sum_probs=61.0
Q ss_pred HHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEec
Q 014285 237 VLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVAD 310 (427)
Q Consensus 237 ~l~~ir~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~d 310 (427)
||++||+. ||++.|++|+|++||+++|+++++.|+++ .|||||++++|++++++|++ ++++||++|
T Consensus 1 ri~avr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~----~~iEeP~~~~d~~~~~~l~~----~~~~pia~d 67 (67)
T PF01188_consen 1 RIRAVREAVGPDIDLMVDANQAWTLEEAIRLARALEDY----EWIEEPLPPDDLDGLAELRQ----QTSVPIAAD 67 (67)
T ss_dssp HHHHHHHHHSTTSEEEEE-TTBBSHHHHHHHHHHHGGG----SEEESSSSTTSHHHHHHHHH----HCSSEEEES
T ss_pred CHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHcChh----heeecCCCCCCHHHHHHHHH----hCCCCEEeC
Confidence 68999995 99999999999999999999999999996 39999999999999999986 799999987
|
1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C .... |
| >PTZ00378 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.8e-14 Score=142.84 Aligned_cols=294 Identities=16% Similarity=0.146 Sum_probs=195.6
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCce-----EEEEeecCCC------C-Cc-chHHHHHHHHH
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCV-----GWGEVAVVPL------V-TG-DQTKALVKVRE 131 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~-----G~GE~~~~~~------~-s~-~~~~~~~~~~~ 131 (427)
+.|++|..+.+- .+. ..++|-|+|++++|.. -.||+.-++. | .+ ....++. +.
T Consensus 49 ~~I~~i~areIl--------DSr----GnPTVev~v~l~~G~~vPSGAStGEA~elRDgd~~~~~g~gkgV~~Av~--~~ 114 (518)
T PTZ00378 49 DEIRALVHNEVL--------SPA----GETVLRFTLELLNGMEVSSGALLSPSHGERDGEADATLDPAEYTTEALQ--NS 114 (518)
T ss_pred CeeeEEEEEEEE--------cCC----CCeeEEEEEEECCCCEECCCCcccceeeeecCCcccccCCCccHHHHHH--hh
Confidence 457888765531 122 2567888899988843 0125543321 2 11 1222222 45
Q ss_pred HhhHhcCCCCCCHHHHHHHHHHHC----CCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC--------CCceeeeee
Q 014285 132 ACQFLRQSPPTTLNFALDEIARIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA--------SNSLSTAIT 199 (427)
Q Consensus 132 ~~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~--------~~~ip~~~~ 199 (427)
+.|.|+|.++.+...+.+.|.+.. ......++..|+.||..-+.|+..++|||++|++. ...+|+...
T Consensus 115 i~p~Lig~~~~dQ~~iD~~Li~lDGT~nks~lGaNailavS~A~akAAA~~~~~PLy~yL~~~~~~~~~~~~~~lP~P~~ 194 (518)
T PTZ00378 115 YFPRLLQLGARDQREFDSTLRAALSTSPLANVGSAVQWALSIVASLAAARCRSVPLFQYLRALFGSLTSVETFSMPQLCI 194 (518)
T ss_pred hHHHHcCCChHhHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHHHHHHHHcCCCHHHHhhccccccccCCCcccCccce
Confidence 899999999999888888876532 11234688999999999999999999999999873 123443210
Q ss_pred --------------------ecC----CCHHHHHHHH-HHH--hhcCCcEEEEecc-------C---CchhhHHHH-HHH
Q 014285 200 --------------------IPA----VSPAEASELA-SKY--CKLGFSTLKLNVG-------R---NITADFDVL-QAI 241 (427)
Q Consensus 200 --------------------i~~----~~~~~~~~~~-~~~--~~~Gf~~iKlKiG-------~---~~~~d~~~l-~~i 241 (427)
+|. .+..+..+.. +-+ +..|+. .-+| + +.++-++++ ++|
T Consensus 195 NiinGG~HA~n~l~iQEFmI~P~ga~g~s~~ealr~~~evyh~L~~~~~---t~vGDEGGfaap~~~~~eeAL~li~eAi 271 (518)
T PTZ00378 195 TFFGPGNPSTARLALKSVLFSPVMPSGTVLRERMQKIFAAFHHFCQSHN---SSVRSDGSLHWDGFANLTDAVKLATEAL 271 (518)
T ss_pred EeecCccCCCCCCCceEEEEeeCCCCCCCHHHHHHHHHHHHHHHhhccc---CccCCCcCcCCCCCCCHHHHHHHHHHHH
Confidence 122 2333332221 111 112322 1122 1 123344443 566
Q ss_pred HHhC--C--CcEEEEeCCC----------------------------------CCCHHHHHHHHHHh-hhCC--CCCceE
Q 014285 242 HAVH--P--HCSFILDANE----------------------------------GYTSEEAVEVLGKL-NDMG--VIPVLF 280 (427)
Q Consensus 242 r~~~--~--~~~L~vDAN~----------------------------------~~s~~~A~~~l~~L-~~~~--l~~~~i 280 (427)
++++ | ++.|.+|+-. .+|.+|.+++.+.| ++|. + .+|
T Consensus 272 ~~aGy~pG~dI~iglD~AASef~~~~~~~~~~~~y~~~k~~~e~~Y~l~~~~~~~t~~elieyy~~li~kYP~iI--vsI 349 (518)
T PTZ00378 272 RAVQLTPGTDVCLGLRMAASTTRVPATAVADGGAWKEAKDDCEVLYSLFPGEPDVTGDQLSEYVREQLQAVPDIV--VYV 349 (518)
T ss_pred HHhCCCCCCeEEEEEecccccccccccccccchhhccccCCCceeeeecCCCCCCCHHHHHHHHHHHHHHCCCce--EEE
Confidence 6654 3 5777777521 14577888877665 6775 4 589
Q ss_pred eCCCCCCChhhHHHHHHhhccccCCeEEecCCC-C-CHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcE
Q 014285 281 EQPVHRDDWSGLHDVSNFARDTYGISVVADESC-R-SLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHL 357 (427)
Q Consensus 281 EqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~-~-~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~ 357 (427)
|+|+..+||+++++|++.+ ...+.|..|.-. + +...+++.++.+.++.+.+||+++| ++++++.+++|+++|..+
T Consensus 350 EDp~~E~D~~gw~~lt~~l--G~~iqivGDDL~vT~n~~ri~~gi~~~~~NaiLIK~NQIGTlSEtieav~lA~~~g~~~ 427 (518)
T PTZ00378 350 EDTHCDEDTFGLQRLQAAL--GDSIVLSGVDVYARSEYKKVESGLRGLWTSNIVLNPCAIGTLSDVVEIVRAVGEDEGRA 427 (518)
T ss_pred ecCCCchHHHHHHHHHHHh--CCeEEEECCCcCcCCCHHHHHHHHhcCCCceEEEccccceeHHHHHHHHHHHHHcCCcE
Confidence 9999999999999999743 245788888744 4 4888999999999999999999999 999999999999999999
Q ss_pred E---EcccCchhHHHHHHHHHHhhcCCc
Q 014285 358 M---IDGMIETRLATGFALHLAAGLGCI 382 (427)
Q Consensus 358 ~---~~s~~es~ig~~a~~hlaaal~~~ 382 (427)
+ +++. || .-..++|||.+++..
T Consensus 428 v~v~vShR--SG-eD~~IAdLAVa~ga~ 452 (518)
T PTZ00378 428 VTVLVQTL--AG-NAATAAHLAVAMGAR 452 (518)
T ss_pred EccccCCC--cC-CccHHHHHHHHcCCC
Confidence 7 6654 33 456788999988764
|
|
| >KOG2670 consensus Enolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=5e-13 Score=127.21 Aligned_cols=250 Identities=22% Similarity=0.328 Sum_probs=169.4
Q ss_pred HHHHHHH-HhhHhcCC--CCCCHHHHHHHHHHHCCC-----ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCC---CCC-
Q 014285 125 ALVKVRE-ACQFLRQS--PPTTLNFALDEIARILPG-----SEFASVRAGVEMALIDAVANSIDIPLWRLFGG---ASN- 192 (427)
Q Consensus 125 ~~~~~~~-~~~~l~g~--~~~~~~~~~~~l~~~~~g-----~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg---~~~- 192 (427)
++..+++ +.|.|++. ++.+...+.+.|... .| ...++++.|+.+|+--+-|-..|+|||+.+.. ...
T Consensus 65 aV~niN~~i~pali~~~~dv~~Q~~iD~~mi~L-DGTeNKsklGaNaIlgvSlavckagAa~k~vplykhia~lag~~~~ 143 (433)
T KOG2670|consen 65 AVGNINNTIAPALIKKNLDVTDQKAIDNFMIEL-DGTENKSKLGANAILGVSLAVCKAGAAEKGVPLYKHIADLAGNKQP 143 (433)
T ss_pred HHHHHHHHHHHHHHccCCChhhHHHHHHHHHhc-cCCcccccccchhhHHHHHHHHhhhhhhcCCcHHHHHHHhcCCCCc
Confidence 4444544 68999877 777777777777542 22 22357899999999999999999999997643 222
Q ss_pred -ceeeee--eec--------------------CCCHHHHHHH-------HHHHhhcCCcEEEEecc------CCc---hh
Q 014285 193 -SLSTAI--TIP--------------------AVSPAEASEL-------ASKYCKLGFSTLKLNVG------RNI---TA 233 (427)
Q Consensus 193 -~ip~~~--~i~--------------------~~~~~~~~~~-------~~~~~~~Gf~~iKlKiG------~~~---~~ 233 (427)
-+|+.+ .+. ..++++..+. .+..++.-|-.---.+| +++ ++
T Consensus 144 ~vlPVPaFNVlNGGsHAGn~lAmQEfMIlP~ga~sf~eamr~GsevYh~LK~vik~kyG~~a~nVGDEGGfAPnI~~~~E 223 (433)
T KOG2670|consen 144 YVLPVPAFNVLNGGSHAGNKLAMQEFMILPVGADSFAEAMRMGSEVYHHLKSVIKEKYGADATNVGDEGGFAPNIQTNEE 223 (433)
T ss_pred eEecccceeeecCCccccchhhhhhheecccCchhHHHHHHHhHHHHHHHHHHHHHHhCccccccccccCcCCCccchHH
Confidence 234322 111 1122222111 11111111111112222 122 34
Q ss_pred hHHHH-HHHHHhC--CCcEEEEeCCC----------------------CCCHHHHHHHHHH-hhhCCCCCceEeCCCCCC
Q 014285 234 DFDVL-QAIHAVH--PHCSFILDANE----------------------GYTSEEAVEVLGK-LNDMGVIPVLFEQPVHRD 287 (427)
Q Consensus 234 d~~~l-~~ir~~~--~~~~L~vDAN~----------------------~~s~~~A~~~l~~-L~~~~l~~~~iEqP~~~~ 287 (427)
-++++ .+|++.+ .++.+.+|... .+|.++..++.+. +.+|.+ ..||+|+.++
T Consensus 224 ~L~Li~~Ai~kagyt~kikIgmDvAaseF~~dgkYDLdfk~~~~d~s~~~s~~~L~dlY~~~~k~yPi--vSiEDPFdqd 301 (433)
T KOG2670|consen 224 ALDLIKEAINKAGYTGKVKIGMDVAASEFYKDGKYDLDFKSPNSDPSRWLSGDQLADLYKSFIKDYPI--VSIEDPFDQD 301 (433)
T ss_pred HHHHHHHHHHhcCCCCceEEEEeechhhhhcCCcccccCcCCCCCcccccCHHHHHHHHHHHHhcCCe--eeecCCcchh
Confidence 45554 5666664 47889888731 1366666555544 577875 6999999999
Q ss_pred ChhhHHHHHHhhccccCCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccC-c
Q 014285 288 DWSGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMI-E 364 (427)
Q Consensus 288 d~~~~~~L~~~~r~~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-e 364 (427)
||+.+..+.. .+++.|..|. .++++..++++++..+++.+.+|+.++| +|++.+.+.+|+++|.++|++... |
T Consensus 302 Dw~~w~~~~~----~~~iqiVgDDLtvTnpkri~~Ai~~k~cN~LLlKvNQIGtvtEsiea~~~a~~~gwgvmvSHRSGE 377 (433)
T KOG2670|consen 302 DWEAWSKFFK----EVGIQIVGDDLTVTNPKRIATAIEEKACNALLLKVNQIGTVTESIEAAKLARSAGWGVMVSHRSGE 377 (433)
T ss_pred hHHHHHHHhh----ccceEEecCcccccCHHHHHHHHHHhhccceEeeccccccHHHHHHHHHHHHhcCceEEEeccCCC
Confidence 9999999875 5889999887 7788999999999999999999999999 999999999999999999998753 3
Q ss_pred hhHHHHHHHHHHhhcCCcc
Q 014285 365 TRLATGFALHLAAGLGCIK 383 (427)
Q Consensus 365 s~ig~~a~~hlaaal~~~~ 383 (427)
+ .-..+++|..++.++.
T Consensus 378 T--eDtFIaDL~VGl~tgq 394 (433)
T KOG2670|consen 378 T--EDTFIADLVVGLGTGQ 394 (433)
T ss_pred c--ccchHHHhhhhhccce
Confidence 3 2235677887776653
|
|
| >PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.6e-10 Score=112.61 Aligned_cols=166 Identities=21% Similarity=0.346 Sum_probs=109.2
Q ss_pred CCCHHHHHHHHHHH-hhcCCcEEEEeccCCchhhHHHHHHHHHhC--CCcEEEEeCCC-------CCCHHHHHHHHHHh-
Q 014285 202 AVSPAEASELASKY-CKLGFSTLKLNVGRNITADFDVLQAIHAVH--PHCSFILDANE-------GYTSEEAVEVLGKL- 270 (427)
Q Consensus 202 ~~~~~~~~~~~~~~-~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~--~~~~L~vDAN~-------~~s~~~A~~~l~~L- 270 (427)
+.++++..+.+.+. .+.||.. ++++|.|+... +.+ .+-.-.++... ..|.+|-+++...|
T Consensus 76 ~~~~eeaL~ll~~Ai~~aGy~~-~v~ialD~AAs--------efyd~~~gkY~~~~~~~~~~~~~~~s~delid~y~~li 146 (295)
T PF00113_consen 76 IDDNEEALDLLMEAIKEAGYEP-DVAIALDVAAS--------EFYDEEDGKYDLEFKSKEKDPSRYKSSDELIDYYKDLI 146 (295)
T ss_dssp BSSHHHHHHHHHHHHHHTT-TT-TBEEEEE--GG--------GGEETETTEEETTTTSSSSTGGGEEEHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHccccc-eeeeeccccHH--------HhhhccCCeEEEeecccccccccccCHHHHHHHHHHHH
Confidence 34666665554433 3467776 66666543210 112 11222333222 36889988877765
Q ss_pred hhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHH
Q 014285 271 NDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIK 348 (427)
Q Consensus 271 ~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~ 348 (427)
++|.+ .+||+|+.++||+++++|++.+ .-.+-|..|. .++++..+++.++.++++.+.+|++++| +|++++.++
T Consensus 147 ~~YPI--vsIEDpf~edD~e~w~~lt~~~--g~~~~iVGDDl~vTn~~ri~~~i~~~~~na~llK~NQigTvte~lea~~ 222 (295)
T PF00113_consen 147 KKYPI--VSIEDPFDEDDWEGWAKLTKRL--GDKIQIVGDDLFVTNPKRIKKGIEKKACNALLLKPNQIGTVTETLEAVK 222 (295)
T ss_dssp HHS-E--EEEESSS-TT-HHHHHHHHHHH--TTTSEEEESTTTTT-HHHHHHHHHCT--SEEEE-HHHHSSHHHHHHHHH
T ss_pred HhcCe--EEEEccccccchHHHHHHHHhh--hcceeeecccccccchhhhhccchhhhccchhhhhhhhHHHHHHHHHHH
Confidence 77875 6999999999999999999743 1238899887 6677888999999999999999999999 999999999
Q ss_pred HHHHcCCcEEEcccC-chhHHHHHHHHHHhhcCCc
Q 014285 349 ATRKSGLHLMIDGMI-ETRLATGFALHLAAGLGCI 382 (427)
Q Consensus 349 ~A~~~gi~~~~~s~~-es~ig~~a~~hlaaal~~~ 382 (427)
+|+++|..+++++.. |+ --...+|||.++++.
T Consensus 223 ~a~~~g~~~vvS~rsgEt--eD~~iadLaVg~~a~ 255 (295)
T PF00113_consen 223 LAKSAGWGVVVSHRSGET--EDTFIADLAVGLGAG 255 (295)
T ss_dssp HHHHTT-EEEEE--SS----S--HHHHHHHHTT-S
T ss_pred HHHHCCceeeccCCCCCc--CchhHHHHHhccCcC
Confidence 999999999998754 43 234688999998775
|
In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E .... |
| >COG3799 Mal Methylaspartate ammonia-lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.1e-10 Score=103.99 Aligned_cols=281 Identities=17% Similarity=0.226 Sum_probs=183.2
Q ss_pred eeEEEEEEEEcCCceEEEEeecCCCCCc---chH-----HHHHHHH-HHhhHhcCCCCCCH---HHHHHHHHHHCCCCh-
Q 014285 93 VENVAIRVELSNGCVGWGEVAVVPLVTG---DQT-----KALVKVR-EACQFLRQSPPTTL---NFALDEIARILPGSE- 159 (427)
Q Consensus 93 ~~~vlV~v~t~~G~~G~GE~~~~~~~s~---~~~-----~~~~~~~-~~~~~l~g~~~~~~---~~~~~~l~~~~~g~~- 159 (427)
.+.+-|.+..++|.+-||.|+... ||+ ..+ .....++ .+.|.|+|+|.... .+..+.+ ..++.
T Consensus 50 ge~lsv~lvLsdg~vv~GdcaaVQ-YSGAGgRDpLF~a~~~~~~~~~~v~p~LvgrDv~~~ldnA~vfe~l---~d~~~L 125 (410)
T COG3799 50 GECLSVQLVLSDGAVVVGDCAAVQ-YSGAGGRDPLFLAEHFIPFLNDHVKPLLVGRDVDAFLDNARVFEKL---IDGNLL 125 (410)
T ss_pred cceeeEEEEEecCceeeccceeeE-ecCCCCCCchhhhhhhHHHHhhhhhhhhhCccHHhhcchhHHhHhh---ccCCcc
Confidence 345667777889999999998653 333 111 1111222 36799999876433 2223333 23332
Q ss_pred hhhHHHHHHHHHHHHHHhhCCCChhh----hhCCC--CCceeeeeeecCC---CHHHHHHHHHHHhhcC-CcEEEEeccC
Q 014285 160 FASVRAGVEMALIDAVANSIDIPLWR----LFGGA--SNSLSTAITIPAV---SPAEASELASKYCKLG-FSTLKLNVGR 229 (427)
Q Consensus 160 ~~~a~~aie~Al~Dl~gk~~g~Pl~~----Llgg~--~~~ip~~~~i~~~---~~~~~~~~~~~~~~~G-f~~iKlKiG~ 229 (427)
-.+++.|+..||.|+.+...+.---+ -|+-. .+++|++...+-. ..+.|.-.....+-.| |+.+ =|+|.
T Consensus 126 htAvrYGvSQALl~Aaa~a~~tt~tevvcde~~lp~~te~vP~fgQSGd~R~~~vdkMiLK~vdVLPHgLiNsv-e~~G~ 204 (410)
T COG3799 126 HTAVRYGVSQALLDAAALATGTTKTEVVCDEWQLPRVTESVPLFGQSGDDRYIAVDKMILKGVDVLPHGLINSV-EELGF 204 (410)
T ss_pred hHHHHhhHHHHHHHHHHHhhccchheeehhhhCCCCccccccccccCcchhhhhHHHHHHhhcCccchhhhhhH-HHhCC
Confidence 24679999999999998776644333 33333 3578877654321 2233321111111111 1111 12333
Q ss_pred CchhhHHHHH----HHHHh---CCCcEEEEeCCCC------CCHHHHHHHHHHhhh--CCCCCceEeCCCCCC----Chh
Q 014285 230 NITADFDVLQ----AIHAV---HPHCSFILDANEG------YTSEEAVEVLGKLND--MGVIPVLFEQPVHRD----DWS 290 (427)
Q Consensus 230 ~~~~d~~~l~----~ir~~---~~~~~L~vDAN~~------~s~~~A~~~l~~L~~--~~l~~~~iEqP~~~~----d~~ 290 (427)
|-+.=.+-++ .++.. +..-.|-+|..|. +++....+++..|++ -++ +.+||-|...+ +++
T Consensus 205 dG~~l~Eyv~Wls~R~~~~g~~gYhP~lH~DVYG~iGe~fg~dp~r~a~yi~~l~~~a~~~-pL~IEgP~DaGs~~aQI~ 283 (410)
T COG3799 205 DGEKLREYVRWLSDRILSKGTSGYHPTLHIDVYGTIGEIFGMDPLRCAQYIASLEKEAQGL-PLYIEGPVDAGSKPAQIR 283 (410)
T ss_pred chHHHHHHHHHHHHHHHhcCCCCCCccEEEeehhhhHHHhCCCHHHHHHHHHHHHhhCCCC-ceeeeccccCCCCHHHHH
Confidence 3222233332 23333 2346899999875 577777788888864 234 35999999754 567
Q ss_pred hHHHHHHhhc-cccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcc-cCchhH
Q 014285 291 GLHDVSNFAR-DTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDG-MIETRL 367 (427)
Q Consensus 291 ~~~~L~~~~r-~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s-~~es~i 367 (427)
.|+++++.+. .-+++.|..||.+.+..|+....++.+++.+|+|..-+| |.+..+.+.+|..+.+...+++ ..|+.+
T Consensus 284 ~~a~i~~~L~~~Gs~v~IVaDEwCnt~~Di~~F~dA~a~h~VQiKTPDvGsi~~~~rAvlyC~~~~~~AYvGGtCnETdv 363 (410)
T COG3799 284 LLAAITKELTRLGSGVKIVADEWCNTYQDIVDFTDAAACHMVQIKTPDVGSIHNIVRAVLYCNSHSMEAYVGGTCNETDV 363 (410)
T ss_pred HHHHHHHHHhhcCCcceEeehhhcccHHHHHHHHhhccccEEEecCCCcchHHHHHHHHhhhccCccceeecccccccch
Confidence 7777765433 357899999999999999999999999999999999999 9999999999999999999876 449999
Q ss_pred HHHHHHHHHhhc
Q 014285 368 ATGFALHLAAGL 379 (427)
Q Consensus 368 g~~a~~hlaaal 379 (427)
+..+++|++.+.
T Consensus 364 SAr~cvHValAt 375 (410)
T COG3799 364 SARTCVHVALAT 375 (410)
T ss_pred hhhhhhhhhhhh
Confidence 999999988764
|
|
| >PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4 | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.6e-10 Score=103.16 Aligned_cols=159 Identities=16% Similarity=0.299 Sum_probs=109.4
Q ss_pred CcEEEEeccCCchhhHHHHHHHH----HhC-C--CcEEEEeCCCCC------CHHHHHHHHHHhhh----CCCCCceEeC
Q 014285 220 FSTLKLNVGRNITADFDVLQAIH----AVH-P--HCSFILDANEGY------TSEEAVEVLGKLND----MGVIPVLFEQ 282 (427)
Q Consensus 220 f~~iKlKiG~~~~~d~~~l~~ir----~~~-~--~~~L~vDAN~~~------s~~~A~~~l~~L~~----~~l~~~~iEq 282 (427)
|..+. |+|.+-+.=.+-++-++ +++ + .-.|.+|..|.. +++...+|+.+|++ |.+ .||-
T Consensus 36 innve-klG~~Ge~L~eYv~Wl~~Ri~~lg~~~Y~P~lHiDVYGtiG~~f~~d~~~~adYl~~l~~aA~P~~L---~iEg 111 (248)
T PF07476_consen 36 INNVE-KLGPDGEKLLEYVKWLKDRIRELGDEDYRPVLHIDVYGTIGLAFDNDPDRMADYLAELEEAAAPFKL---RIEG 111 (248)
T ss_dssp ---CC-CC-TTSHHHHHHHHHHHHHHHHHSSTT---EEEEE-TTHHHHHTTT-HHHHHHHHHHHHHHHTTS-E---EEE-
T ss_pred hhCHH-HhCcchHHHHHHHHHHHHHHHHhcCCCCCccEEEEccchHHHHhCCCHHHHHHHHHHHHHhcCCCee---eeeC
Confidence 78888 99986555444444443 333 2 468999998753 57777788888764 544 8999
Q ss_pred CCCCC----ChhhHHHHHHhhcc-ccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCc
Q 014285 283 PVHRD----DWSGLHDVSNFARD-TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLH 356 (427)
Q Consensus 283 P~~~~----d~~~~~~L~~~~r~-~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~ 356 (427)
|+..+ |++.|++|++.+++ .+++.|.+||-+.+++|++...++++.|++|+|..-+| +..+.+.+-+|+++|++
T Consensus 112 P~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~da~A~dmVQIKtPDLGgi~ntieAvlyCk~~gvg 191 (248)
T PF07476_consen 112 PMDAGSREAQIEALAELREELDRRGINVEIVADEWCNTLEDIREFADAKAADMVQIKTPDLGGINNTIEAVLYCKEHGVG 191 (248)
T ss_dssp SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHHTT-SSEEEE-GGGGSSTHHHHHHHHHHHHTT-E
T ss_pred CcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHhcCCcCEEEecCCCccchhhHHHHHHHHHhcCCc
Confidence 99865 56778888876653 46889999999999999999999999999999999998 99999999999999999
Q ss_pred EEEcc-cCchhHHHHHHHHHHhhcCCc
Q 014285 357 LMIDG-MIETRLATGFALHLAAGLGCI 382 (427)
Q Consensus 357 ~~~~s-~~es~ig~~a~~hlaaal~~~ 382 (427)
.+.++ ..|+..+.-+++|+|.|.+..
T Consensus 192 aY~GGtCNETd~SArv~~hvalAt~p~ 218 (248)
T PF07476_consen 192 AYLGGTCNETDRSARVCVHVALATRPD 218 (248)
T ss_dssp EEE---TTS-HHHHHHHHHHHHHCT-S
T ss_pred eeecccccccchhHHHHHHHHHhcCHH
Confidence 99987 449999999999999886543
|
3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A. |
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.04 E-value=7e-09 Score=98.05 Aligned_cols=143 Identities=22% Similarity=0.336 Sum_probs=119.2
Q ss_pred hhhCCCCCceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC----------------CchhhHHHHHHHHHhCCCc
Q 014285 185 RLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAVHPHC 248 (427)
Q Consensus 185 ~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~----------------~~~~d~~~l~~ir~~~~~~ 248 (427)
.+++......|+..++...+++++.+.++.+.+.||..|+++.|. +++...+.++++|+..+ +
T Consensus 46 ~~~~~~~~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~-~ 124 (231)
T cd02801 46 RLLTRNPEERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVP-I 124 (231)
T ss_pred HhhccCccCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC-C
Confidence 445555677888888888899999988888888899999999874 34556788899988544 7
Q ss_pred EEEEeCCCCCCHH-HHHHHHHHhhhCCCCCceE-------eC-CCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHH
Q 014285 249 SFILDANEGYTSE-EAVEVLGKLNDMGVIPVLF-------EQ-PVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDV 319 (427)
Q Consensus 249 ~L~vDAN~~~s~~-~A~~~l~~L~~~~l~~~~i-------Eq-P~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~ 319 (427)
.+.++.|.+|+.+ ++.++++.|++.++. +| +| +..+.+++.++++++ ..++||.++..+.+..++
T Consensus 125 ~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd--~i~v~~~~~~~~~~~~~~~~~~~~i~~----~~~ipvi~~Ggi~~~~d~ 198 (231)
T cd02801 125 PVTVKIRLGWDDEEETLELAKALEDAGAS--ALTVHGRTREQRYSGPADWDYIAEIKE----AVSIPVIANGDIFSLEDA 198 (231)
T ss_pred CEEEEEeeccCCchHHHHHHHHHHHhCCC--EEEECCCCHHHcCCCCCCHHHHHHHHh----CCCCeEEEeCCCCCHHHH
Confidence 7899999999876 899999999999875 78 76 776778888888875 688999999999999999
Q ss_pred HHHHHcCCCcEEEeC
Q 014285 320 QKVMQENLASVVNIK 334 (427)
Q Consensus 320 ~~ll~~~a~~~i~lk 334 (427)
.++++.+.+|.+++=
T Consensus 199 ~~~l~~~gad~V~ig 213 (231)
T cd02801 199 LRCLEQTGVDGVMIG 213 (231)
T ss_pred HHHHHhcCCCEEEEc
Confidence 999998778988764
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.2e-09 Score=103.79 Aligned_cols=120 Identities=20% Similarity=0.338 Sum_probs=97.7
Q ss_pred HHHHHHHHhhcCCcEEEEeccC------------Cchhh-------------HHHHHHHHH-hCCCcEEEEeCC------
Q 014285 208 ASELASKYCKLGFSTLKLNVGR------------NITAD-------------FDVLQAIHA-VHPHCSFILDAN------ 255 (427)
Q Consensus 208 ~~~~~~~~~~~Gf~~iKlKiG~------------~~~~d-------------~~~l~~ir~-~~~~~~L~vDAN------ 255 (427)
+.+.++.+++.||..|+++.|. +...| .+.+++||+ +++++.|.+|.|
T Consensus 156 ~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~ 235 (336)
T cd02932 156 FVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVE 235 (336)
T ss_pred HHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCC
Confidence 4455777788999999999852 22233 789999998 578989999855
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCceEe-----------CCC-CCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHH
Q 014285 256 EGYTSEEAVEVLGKLNDMGVIPVLFE-----------QPV-HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVM 323 (427)
Q Consensus 256 ~~~s~~~A~~~l~~L~~~~l~~~~iE-----------qP~-~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll 323 (427)
++|+.++++++++.|+++++ .||| .|+ +..+++.++++++ .+++||+.++.+.+..++++++
T Consensus 236 ~g~~~~e~~~ia~~Le~~gv--d~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~----~~~iPVi~~G~i~t~~~a~~~l 309 (336)
T cd02932 236 GGWDLEDSVELAKALKELGV--DLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQ----EAGIPVIAVGLITDPEQAEAIL 309 (336)
T ss_pred CCCCHHHHHHHHHHHHHcCC--CEEEECCCCCCcccccCCCccccHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHHH
Confidence 89999999999999999987 4999 466 3345566677765 6789999999999999999999
Q ss_pred HcCCCcEEEe
Q 014285 324 QENLASVVNI 333 (427)
Q Consensus 324 ~~~a~~~i~l 333 (427)
+.+.+|+|.+
T Consensus 310 ~~g~aD~V~~ 319 (336)
T cd02932 310 ESGRADLVAL 319 (336)
T ss_pred HcCCCCeehh
Confidence 9998998765
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.3e-07 Score=90.42 Aligned_cols=120 Identities=18% Similarity=0.287 Sum_probs=94.8
Q ss_pred HHHHHHHHhhcCCcEEEEeccC---------------------C----chhhHHHHHHHHH-hCCCcEEEEeCC------
Q 014285 208 ASELASKYCKLGFSTLKLNVGR---------------------N----ITADFDVLQAIHA-VHPHCSFILDAN------ 255 (427)
Q Consensus 208 ~~~~~~~~~~~Gf~~iKlKiG~---------------------~----~~~d~~~l~~ir~-~~~~~~L~vDAN------ 255 (427)
..+.++..++.||..|-+..|. + .+-.++.|++||+ +++++.|.+|.|
T Consensus 151 ~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~ 230 (338)
T cd04733 151 FAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQR 230 (338)
T ss_pred HHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCC
Confidence 3455667778999999998762 1 1224678999998 578999999998
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCceEe-------CCCCC---C---------ChhhHHHHHHhhccccCCeEEecCCCCCH
Q 014285 256 EGYTSEEAVEVLGKLNDMGVIPVLFE-------QPVHR---D---------DWSGLHDVSNFARDTYGISVVADESCRSL 316 (427)
Q Consensus 256 ~~~s~~~A~~~l~~L~~~~l~~~~iE-------qP~~~---~---------d~~~~~~L~~~~r~~~~iPIa~dE~~~~~ 316 (427)
++|+.++++++++.|++.++ .||| +|... . .++..++++ +.+++||+.++.+.++
T Consensus 231 ~g~~~eea~~ia~~Le~~Gv--d~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik----~~v~iPVi~~G~i~t~ 304 (338)
T cd04733 231 GGFTEEDALEVVEALEEAGV--DLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIR----KVTKTPLMVTGGFRTR 304 (338)
T ss_pred CCCCHHHHHHHHHHHHHcCC--CEEEecCCCCCCccccccccCCccccchhhHHHHHHHH----HHcCCCEEEeCCCCCH
Confidence 68999999999999999987 4999 66632 1 123334554 3689999999999999
Q ss_pred HHHHHHHHcCCCcEEEe
Q 014285 317 NDVQKVMQENLASVVNI 333 (427)
Q Consensus 317 ~~~~~ll~~~a~~~i~l 333 (427)
++++++++.+.+|+|.+
T Consensus 305 ~~a~~~l~~g~aD~V~l 321 (338)
T cd04733 305 AAMEQALASGAVDGIGL 321 (338)
T ss_pred HHHHHHHHcCCCCeeee
Confidence 99999999999999876
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.1e-06 Score=87.64 Aligned_cols=119 Identities=20% Similarity=0.281 Sum_probs=93.1
Q ss_pred HHHHHHHhhcCCcEEEEeccC------------Cchh-------------hHHHHHHHHH-hCCCcEEEEeCC------C
Q 014285 209 SELASKYCKLGFSTLKLNVGR------------NITA-------------DFDVLQAIHA-VHPHCSFILDAN------E 256 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG~------------~~~~-------------d~~~l~~ir~-~~~~~~L~vDAN------~ 256 (427)
.+.++.+.+.||..|+++.+. +... ..+.+++||+ .++++.|.|+.| +
T Consensus 144 ~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~ 223 (327)
T cd02803 144 AAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPG 223 (327)
T ss_pred HHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCC
Confidence 445677788999999999862 1112 2678999998 478888888877 4
Q ss_pred CCCHHHHHHHHHHhhhCCCCCceEe-------CCCC---------CCChhhHHHHHHhhccccCCeEEecCCCCCHHHHH
Q 014285 257 GYTSEEAVEVLGKLNDMGVIPVLFE-------QPVH---------RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQ 320 (427)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~~~iE-------qP~~---------~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~ 320 (427)
+|+.++++++++.|+++++. ||+ +|.. ..+++..+++++ .+++||+..+.+.+..+++
T Consensus 224 g~~~~e~~~la~~l~~~G~d--~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~----~~~iPVi~~Ggi~t~~~a~ 297 (327)
T cd02803 224 GLTLEEAIEIAKALEEAGVD--ALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKK----AVKIPVIAVGGIRDPEVAE 297 (327)
T ss_pred CCCHHHHHHHHHHHHHcCCC--EEEeCCCCCcccccccCCCCCCcchhHHHHHHHHH----HCCCCEEEeCCCCCHHHHH
Confidence 58999999999999999974 884 6654 233455555654 6789999999999999999
Q ss_pred HHHHcCCCcEEEe
Q 014285 321 KVMQENLASVVNI 333 (427)
Q Consensus 321 ~ll~~~a~~~i~l 333 (427)
++++.+.+|.|.+
T Consensus 298 ~~l~~g~aD~V~i 310 (327)
T cd02803 298 EILAEGKADLVAL 310 (327)
T ss_pred HHHHCCCCCeeee
Confidence 9999988998775
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.49 E-value=2e-06 Score=86.73 Aligned_cols=122 Identities=19% Similarity=0.205 Sum_probs=90.8
Q ss_pred HHHHHHHHhhcCCcEEEEeccC------------C-------------chhhHHHHHHHHH-hCCCcEEE-----EeCC-
Q 014285 208 ASELASKYCKLGFSTLKLNVGR------------N-------------ITADFDVLQAIHA-VHPHCSFI-----LDAN- 255 (427)
Q Consensus 208 ~~~~~~~~~~~Gf~~iKlKiG~------------~-------------~~~d~~~l~~ir~-~~~~~~L~-----vDAN- 255 (427)
+.+.|+.+++.||..|++..+. + .+..++.+++||+ +++++.+. .|.+
T Consensus 139 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~ 218 (353)
T cd02930 139 FARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVE 218 (353)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCC
Confidence 3445666778999999998731 1 2345778999999 47776554 4654
Q ss_pred CCCCHHHHHHHHHHhhhCCCC-----CceEeCCCCCCC--------hhhHHHHHHhhccccCCeEEecCCCCCHHHHHHH
Q 014285 256 EGYTSEEAVEVLGKLNDMGVI-----PVLFEQPVHRDD--------WSGLHDVSNFARDTYGISVVADESCRSLNDVQKV 322 (427)
Q Consensus 256 ~~~s~~~A~~~l~~L~~~~l~-----~~~iEqP~~~~d--------~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~l 322 (427)
++|+.++++++++.|+++++. ..|.|+|++..+ .+.+++++ +.+++||+..+.+.++.+++++
T Consensus 219 ~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik----~~v~iPVi~~G~i~~~~~a~~~ 294 (353)
T cd02930 219 GGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLK----RAVDIPVIASNRINTPEVAERL 294 (353)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHH----HhCCCCEEEcCCCCCHHHHHHH
Confidence 678999999999999998742 125688876431 22334554 3789999999999999999999
Q ss_pred HHcCCCcEEEe
Q 014285 323 MQENLASVVNI 333 (427)
Q Consensus 323 l~~~a~~~i~l 333 (427)
++.+.+|++.+
T Consensus 295 i~~g~~D~V~~ 305 (353)
T cd02930 295 LADGDADMVSM 305 (353)
T ss_pred HHCCCCChhHh
Confidence 99999998765
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >PF03952 Enolase_N: Enolase, N-terminal domain; InterPro: IPR020811 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ] | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.8e-05 Score=67.13 Aligned_cols=95 Identities=26% Similarity=0.233 Sum_probs=66.5
Q ss_pred eeEEEEEEEEcCCceEEEEeecCCC----------------CCc-chHHHHHHHHH-HhhHhcCCCCCCHHHHHHHHHHH
Q 014285 93 VENVAIRVELSNGCVGWGEVAVVPL----------------VTG-DQTKALVKVRE-ACQFLRQSPPTTLNFALDEIARI 154 (427)
Q Consensus 93 ~~~vlV~v~t~~G~~G~GE~~~~~~----------------~s~-~~~~~~~~~~~-~~~~l~g~~~~~~~~~~~~l~~~ 154 (427)
.+++-|+|.+++|..|.+-+..... |.+ ....++..+++ +.|.|+|.++.+...+.+.|.+.
T Consensus 16 ~PTVEveV~~~~g~~~ra~~PsGaStG~~Ea~elrD~~~~~~~gkgV~~Av~~vn~~i~~~L~g~~~~dQ~~iD~~L~~l 95 (132)
T PF03952_consen 16 NPTVEVEVFTSNGNVGRASVPSGASTGSHEAVELRDGDPERYGGKGVSKAVENVNEIIAPALIGLDPTDQEEIDQILIEL 95 (132)
T ss_dssp -EEEEEEEEETTEEEEEEE--B-SSSSSSS-B---B-STTSGGGTBHHHHHHHHHHTHHHHHTTSBTT-HHHHHHHHHHH
T ss_pred CceEEEEEEECCcccceeccccccCCCccccccccCCCcceecCcccchhhhhHHHHHHHHHHhcchhhHHHhCccceec
Confidence 5789999999999888887754311 111 12345555554 78999999999999888887654
Q ss_pred C----CCChhhhHHHHHHHHHHHHHHhhCCCChhhhh
Q 014285 155 L----PGSEFASVRAGVEMALIDAVANSIDIPLWRLF 187 (427)
Q Consensus 155 ~----~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Ll 187 (427)
- ......++..|+.+|++-+.|+..|+|||++|
T Consensus 96 DgT~nk~~lGaNa~lavS~A~a~AaA~~~~~pL~~~l 132 (132)
T PF03952_consen 96 DGTPNKSRLGANAILAVSLAVAKAAAAAKGIPLYRYL 132 (132)
T ss_dssp HTSTTSTTT-HHHHHHHHHHHHHHHHHHHTS-HHHHH
T ss_pred cCChhhhcccchHHHHHHHHHHHHHHHHcCCChhhcC
Confidence 1 11233578999999999999999999999975
|
In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3OTR_F 3QTP_A 1PDY_A 1PDZ_A 3TQP_B 2PTZ_A 2PTW_A .... |
| >PF05034 MAAL_N: Methylaspartate ammonia-lyase N-terminus; InterPro: IPR022665 Methylaspartate ammonia-lyase 4 | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0032 Score=54.85 Aligned_cols=94 Identities=20% Similarity=0.333 Sum_probs=60.4
Q ss_pred eeeEEEEEEEEcCCceEEEEeecCC--CCCcch-----HHHHHHH-HHHhhHhcCCCCCCHHHHHHHHHHHCCCCh-hhh
Q 014285 92 NVENVAIRVELSNGCVGWGEVAVVP--LVTGDQ-----TKALVKV-REACQFLRQSPPTTLNFALDEIARILPGSE-FAS 162 (427)
Q Consensus 92 ~~~~vlV~v~t~~G~~G~GE~~~~~--~~s~~~-----~~~~~~~-~~~~~~l~g~~~~~~~~~~~~l~~~~~g~~-~~~ 162 (427)
..+.+.|.+..+||.+.||.|+..- +.++.. .+.+..+ ..+.|.|.|++.......-+.+.....|.. -.+
T Consensus 49 ~gesisV~l~L~dG~va~GDCaaVQYSGagGRDPLF~a~~~ip~ie~~v~p~L~g~d~~~Fr~~a~~~d~~~~g~rlhtA 128 (159)
T PF05034_consen 49 AGESISVMLVLEDGQVAYGDCAAVQYSGAGGRDPLFLAEDFIPVIEKEVAPRLVGRDLSSFRENAEKFDELVDGKRLHTA 128 (159)
T ss_dssp EEEEEEEEEEETTS-EEEEEE---TTTTSTTS-S---HHHHHHHHHHHTHHHHTT-B-S-CHHHHHHHHH-ETTEE--HH
T ss_pred cCcEEEEEEEeCCCCEEEeeehheeecccCCCCCcccHHHHHHHHHhhccHHHcCCcHHHHHHHHHHHHhcccCCcchhH
Confidence 3567889999999999999998752 222211 2233333 348899999999988888877776644432 256
Q ss_pred HHHHHHHHHHHHHHhhCCCChhh
Q 014285 163 VRAGVEMALIDAVANSIDIPLWR 185 (427)
Q Consensus 163 a~~aie~Al~Dl~gk~~g~Pl~~ 185 (427)
++.||.+||+|+.++..+.-..+
T Consensus 129 iRYGvsQALL~A~A~a~~~tmae 151 (159)
T PF05034_consen 129 IRYGVSQALLDAAAKAQRTTMAE 151 (159)
T ss_dssp HHHHHHHHHHHHHHHHCTS-HHH
T ss_pred HHHhHHHHHHHHHHHHcCCcHHH
Confidence 89999999999999998654443
|
3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the N-terminal region of methylaspartate ammonia-lyase. This domain is structurally related to PF03952 from PFAM []. This domain is associated with the catalytic domain PF07476 from PFAM. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A. |
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.011 Score=58.65 Aligned_cols=144 Identities=17% Similarity=0.219 Sum_probs=102.3
Q ss_pred CceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC----------------CchhhHHHHHHHHHhC-CCcEEEEeC
Q 014285 192 NSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAVH-PHCSFILDA 254 (427)
Q Consensus 192 ~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~----------------~~~~d~~~l~~ir~~~-~~~~L~vDA 254 (427)
...|+...+...+++++.+.++...+.||..|-+..|. +++.-.+.++++|+.. +++.+.|=-
T Consensus 61 ~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKi 140 (312)
T PRK10550 61 SGTLVRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKV 140 (312)
T ss_pred CCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEE
Confidence 34577778888899999888888888999999998873 1233345677778753 344444444
Q ss_pred CCCCC-HHHHHHHHHHhhhCCCC-----CceEeCCCCC--CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcC
Q 014285 255 NEGYT-SEEAVEVLGKLNDMGVI-----PVLFEQPVHR--DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQEN 326 (427)
Q Consensus 255 N~~~s-~~~A~~~l~~L~~~~l~-----~~~iEqP~~~--~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~ 326 (427)
.-+|+ .+++.++++.+++.|+. ...-+|.... -+|+..+++.+ ..++||...=.+.+..++.++++..
T Consensus 141 R~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~----~~~iPVi~nGdI~t~~da~~~l~~~ 216 (312)
T PRK10550 141 RLGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQ----RLTIPVIANGEIWDWQSAQQCMAIT 216 (312)
T ss_pred ECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHh----hcCCcEEEeCCcCCHHHHHHHHhcc
Confidence 34564 45678999999886643 2223443322 26877888875 6789999988999999999999888
Q ss_pred CCcEEEeCCCCcc
Q 014285 327 LASVVNIKLAKFG 339 (427)
Q Consensus 327 a~~~i~lk~~~~G 339 (427)
.+|.|.+==..+|
T Consensus 217 g~DgVmiGRg~l~ 229 (312)
T PRK10550 217 GCDAVMIGRGALN 229 (312)
T ss_pred CCCEEEEcHHhHh
Confidence 8999887554444
|
|
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.018 Score=57.38 Aligned_cols=139 Identities=17% Similarity=0.229 Sum_probs=98.1
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCC----------------chhhHHHHHHHHHhCCCcEEEEeCCCC
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRN----------------ITADFDVLQAIHAVHPHCSFILDANEG 257 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~----------------~~~d~~~l~~ir~~~~~~~L~vDAN~~ 257 (427)
.|+...+...+++++.+.++...+.||..|-+..|.. ++.-.+.++++|+.. ++.+.+=-+.+
T Consensus 65 ~~~~vQl~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~-d~pv~vKiR~G 143 (321)
T PRK10415 65 GIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAV-DVPVTLKIRTG 143 (321)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhc-CCceEEEEEcc
Confidence 4555667778999998888777778999999998832 333455667777642 22233322345
Q ss_pred CCH--HHHHHHHHHhhhCCCCCceE-------eCCCC-CCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCC
Q 014285 258 YTS--EEAVEVLGKLNDMGVIPVLF-------EQPVH-RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL 327 (427)
Q Consensus 258 ~s~--~~A~~~l~~L~~~~l~~~~i-------EqP~~-~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a 327 (427)
|+. .++.++++.+++.|+. +| +|... ..+|+..+++++ .+++||...=.+.+..+++++++...
T Consensus 144 ~~~~~~~~~~~a~~le~~G~d--~i~vh~rt~~~~~~G~a~~~~i~~ik~----~~~iPVI~nGgI~s~~da~~~l~~~g 217 (321)
T PRK10415 144 WAPEHRNCVEIAQLAEDCGIQ--ALTIHGRTRACLFNGEAEYDSIRAVKQ----KVSIPVIANGDITDPLKARAVLDYTG 217 (321)
T ss_pred ccCCcchHHHHHHHHHHhCCC--EEEEecCccccccCCCcChHHHHHHHH----hcCCcEEEeCCCCCHHHHHHHHhccC
Confidence 653 3678899999988864 55 33332 246777777765 68899999989999999999998777
Q ss_pred CcEEEeCCCCcc
Q 014285 328 ASVVNIKLAKFG 339 (427)
Q Consensus 328 ~~~i~lk~~~~G 339 (427)
+|.+++=-..+|
T Consensus 218 adgVmiGR~~l~ 229 (321)
T PRK10415 218 ADALMIGRAAQG 229 (321)
T ss_pred CCEEEEChHhhc
Confidence 999988554444
|
|
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.016 Score=57.54 Aligned_cols=143 Identities=23% Similarity=0.366 Sum_probs=94.6
Q ss_pred hhhCCCCCceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC----------------CchhhHHHHHHHHHhCCCc
Q 014285 185 RLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAVHPHC 248 (427)
Q Consensus 185 ~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~----------------~~~~d~~~l~~ir~~~~~~ 248 (427)
.++......-|+...+...+++.+.+.++...+.||..|-+..|- +++.-.+.|+++++..+ +
T Consensus 45 ~~~~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~-~ 123 (309)
T PF01207_consen 45 RLLPFLPNERPLIVQLFGNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVP-I 123 (309)
T ss_dssp HHS-GCC-T-TEEEEEE-S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-S-S
T ss_pred ecccccccccceeEEEeeccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccc-c
Confidence 444444445677778888899999888887766799999999982 34445667788887543 4
Q ss_pred EEEEeCCCCCC--HHHHHHHHHHhhhCCCCCceE-------eCCCC-CCChhhHHHHHHhhccccCCeEEecCCCCCHHH
Q 014285 249 SFILDANEGYT--SEEAVEVLGKLNDMGVIPVLF-------EQPVH-RDDWSGLHDVSNFARDTYGISVVADESCRSLND 318 (427)
Q Consensus 249 ~L~vDAN~~~s--~~~A~~~l~~L~~~~l~~~~i-------EqP~~-~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~ 318 (427)
.+.|-.--+|+ .++.+++++.|++.|+. +| +|--. +-||+.++++++ ..++||.+.=.+.+..|
T Consensus 124 pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~--~i~vH~Rt~~q~~~~~a~w~~i~~i~~----~~~ipvi~NGdI~s~~d 197 (309)
T PF01207_consen 124 PVSVKIRLGWDDSPEETIEFARILEDAGVS--AITVHGRTRKQRYKGPADWEAIAEIKE----ALPIPVIANGDIFSPED 197 (309)
T ss_dssp EEEEEEESECT--CHHHHHHHHHHHHTT----EEEEECS-TTCCCTS---HHHHHHCHH----C-TSEEEEESS--SHHH
T ss_pred ceEEecccccccchhHHHHHHHHhhhcccc--eEEEecCchhhcCCcccchHHHHHHhh----cccceeEEcCccCCHHH
Confidence 55555555555 78889999999998864 54 34433 568999999986 67899999999999999
Q ss_pred HHHHHHcCCCcEEEeC
Q 014285 319 VQKVMQENLASVVNIK 334 (427)
Q Consensus 319 ~~~ll~~~a~~~i~lk 334 (427)
+.++++.-.+|.+.+=
T Consensus 198 ~~~~~~~tg~dgvMig 213 (309)
T PF01207_consen 198 AERMLEQTGADGVMIG 213 (309)
T ss_dssp HHHHCCCH-SSEEEES
T ss_pred HHHHHHhcCCcEEEEc
Confidence 9999987678888763
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.049 Score=55.63 Aligned_cols=122 Identities=13% Similarity=0.187 Sum_probs=80.5
Q ss_pred HHHHHHhhcCCcEEEEec---cC-------------------Cchh----hHHHHHHHHH-hCCC--cEEEEeC------
Q 014285 210 ELASKYCKLGFSTLKLNV---GR-------------------NITA----DFDVLQAIHA-VHPH--CSFILDA------ 254 (427)
Q Consensus 210 ~~~~~~~~~Gf~~iKlKi---G~-------------------~~~~----d~~~l~~ir~-~~~~--~~L~vDA------ 254 (427)
+.|+...++||..|.+.. |- +++. -++.+++||+ ++++ +.+++.+
T Consensus 154 ~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~ 233 (382)
T cd02931 154 ESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKD 233 (382)
T ss_pred HHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhccc
Confidence 445666789999999997 41 1111 2567899998 4666 3444432
Q ss_pred ------------CCCCCHHHHHHHHHHhhhCCCCCceEe-------CCC---CCCC-hh-hHHHHHHhhccccCCeEEec
Q 014285 255 ------------NEGYTSEEAVEVLGKLNDMGVIPVLFE-------QPV---HRDD-WS-GLHDVSNFARDTYGISVVAD 310 (427)
Q Consensus 255 ------------N~~~s~~~A~~~l~~L~~~~l~~~~iE-------qP~---~~~d-~~-~~~~L~~~~r~~~~iPIa~d 310 (427)
+++++.++++++++.|++.++. |++ ++. +... -. .+..+++.+++..++||.+-
T Consensus 234 ~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD--~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~ 311 (382)
T cd02931 234 LRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYD--ALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIMA 311 (382)
T ss_pred cccccccccccccCCCCHHHHHHHHHHHHHhCCC--EEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEEe
Confidence 4578999999999999987764 553 111 0000 00 01122222334678999988
Q ss_pred CCCCCHHHHHHHHHcCCCcEEEe
Q 014285 311 ESCRSLNDVQKVMQENLASVVNI 333 (427)
Q Consensus 311 E~~~~~~~~~~ll~~~a~~~i~l 333 (427)
=.+.++.+..++++.+.+|.|.+
T Consensus 312 G~i~~~~~~~~~l~~g~~D~V~~ 334 (382)
T cd02931 312 GRMEDPELASEAINEGIADMISL 334 (382)
T ss_pred CCCCCHHHHHHHHHcCCCCeeee
Confidence 88899999999999998998765
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.061 Score=53.65 Aligned_cols=141 Identities=21% Similarity=0.323 Sum_probs=105.9
Q ss_pred CceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC----------------CchhhHHHHHHHHHhCCCcEEEEeCC
Q 014285 192 NSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAVHPHCSFILDAN 255 (427)
Q Consensus 192 ~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~----------------~~~~d~~~l~~ir~~~~~~~L~vDAN 255 (427)
...|+...+...+|+.+.+.++...+.||..|-+..|. +++.=.+.|+++++..+++.+.|=--
T Consensus 65 ~e~p~~vQl~gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiR 144 (323)
T COG0042 65 EERPVAVQLGGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIR 144 (323)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEe
Confidence 34566677888899888888888888999999999983 23445667888888654677777777
Q ss_pred CCCCHHH--HHHHHHHhhhCCCCCceE---------eCCCCCCChhhHHHHHHhhccccC-CeEEecCCCCCHHHHHHHH
Q 014285 256 EGYTSEE--AVEVLGKLNDMGVIPVLF---------EQPVHRDDWSGLHDVSNFARDTYG-ISVVADESCRSLNDVQKVM 323 (427)
Q Consensus 256 ~~~s~~~--A~~~l~~L~~~~l~~~~i---------EqP~~~~d~~~~~~L~~~~r~~~~-iPIa~dE~~~~~~~~~~ll 323 (427)
-+|+..+ +.++++.+++.+....++ ..| -||+..+++.+ ..+ +||...-.+.+.++.++.+
T Consensus 145 lG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~---ad~~~I~~vk~----~~~~ipvi~NGdI~s~~~a~~~l 217 (323)
T COG0042 145 LGWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGP---ADWDYIKELKE----AVPSIPVIANGDIKSLEDAKEML 217 (323)
T ss_pred cccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCc---cCHHHHHHHHH----hCCCCeEEeCCCcCCHHHHHHHH
Confidence 7886555 677888887765431121 223 47999999976 456 9999999999999999999
Q ss_pred HcCCCcEEEeCCCCcc
Q 014285 324 QENLASVVNIKLAKFG 339 (427)
Q Consensus 324 ~~~a~~~i~lk~~~~G 339 (427)
+...+|.+.+-=...|
T Consensus 218 ~~tg~DgVMigRga~~ 233 (323)
T COG0042 218 EYTGADGVMIGRGALG 233 (323)
T ss_pred HhhCCCEEEEcHHHcc
Confidence 9888999887554444
|
|
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.15 Score=51.16 Aligned_cols=143 Identities=16% Similarity=0.234 Sum_probs=99.0
Q ss_pred hhCCCCCceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC----------------CchhhHHHHHHHHHh--CC-
Q 014285 186 LFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAV--HP- 246 (427)
Q Consensus 186 Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~----------------~~~~d~~~l~~ir~~--~~- 246 (427)
++.-....-|+...+...+|+++.+.++...+.||..|-+..|. +++.-.+.++++|+. .|
T Consensus 57 ~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pV 136 (333)
T PRK11815 57 LLAFDPEEHPVALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPV 136 (333)
T ss_pred HhccCCCCCcEEEEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCce
Confidence 44333445577788888899999888888878899999988773 223335677888874 23
Q ss_pred CcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEe--------CC--------CCCCChhhHHHHHHhhccc-cCCeEEe
Q 014285 247 HCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFE--------QP--------VHRDDWSGLHDVSNFARDT-YGISVVA 309 (427)
Q Consensus 247 ~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iE--------qP--------~~~~d~~~~~~L~~~~r~~-~~iPIa~ 309 (427)
.+++|+-..+.-+.+++.++++.+++.|+. +|. |- +++-+|+..+++++ . ..+||.+
T Consensus 137 svKiR~g~~~~~t~~~~~~~~~~l~~aG~d--~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~----~~~~iPVI~ 210 (333)
T PRK11815 137 TVKHRIGIDDQDSYEFLCDFVDTVAEAGCD--TFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKR----DFPHLTIEI 210 (333)
T ss_pred EEEEEeeeCCCcCHHHHHHHHHHHHHhCCC--EEEEcCCchhhcCCCccccccCCCcCHHHHHHHHH----hCCCCeEEE
Confidence 455555333333567788999999887764 342 11 13346777778864 4 4799998
Q ss_pred cCCCCCHHHHHHHHHcCCCcEEEeCCC
Q 014285 310 DESCRSLNDVQKVMQENLASVVNIKLA 336 (427)
Q Consensus 310 dE~~~~~~~~~~ll~~~a~~~i~lk~~ 336 (427)
.=.+.+..++.++++. +|.+++==.
T Consensus 211 nGgI~s~eda~~~l~~--aDgVmIGRa 235 (333)
T PRK11815 211 NGGIKTLEEAKEHLQH--VDGVMIGRA 235 (333)
T ss_pred ECCcCCHHHHHHHHhc--CCEEEEcHH
Confidence 8889999999999973 888776433
|
|
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.094 Score=52.79 Aligned_cols=120 Identities=16% Similarity=0.273 Sum_probs=82.8
Q ss_pred HHHHHHHhhcCCcEEEEeccC---------------------Cchh----hHHHHHHHHHh-CCC--cEEEEeC----CC
Q 014285 209 SELASKYCKLGFSTLKLNVGR---------------------NITA----DFDVLQAIHAV-HPH--CSFILDA----NE 256 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG~---------------------~~~~----d~~~l~~ir~~-~~~--~~L~vDA----N~ 256 (427)
.+.|+...+.||..|-+..+. +++. -++.+++||+. +++ +.+|+-+ .+
T Consensus 144 ~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~ 223 (343)
T cd04734 144 ADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEG 223 (343)
T ss_pred HHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCC
Confidence 344566678999999999831 1121 24678999984 666 4566655 35
Q ss_pred CCCHHHHHHHHHHhhhCC-CCCceEe-------CC------CC-----CC-ChhhHHHHHHhhccccCCeEEecCCCCCH
Q 014285 257 GYTSEEAVEVLGKLNDMG-VIPVLFE-------QP------VH-----RD-DWSGLHDVSNFARDTYGISVVADESCRSL 316 (427)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~-l~~~~iE-------qP------~~-----~~-d~~~~~~L~~~~r~~~~iPIa~dE~~~~~ 316 (427)
+++.++++++++.|++.+ +. ||+ ++ .+ .. +++..+++. +..++||...=.+.++
T Consensus 224 G~~~~e~~~~~~~l~~~G~vd--~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik----~~~~ipvi~~G~i~~~ 297 (343)
T cd04734 224 GLSPDEALEIAARLAAEGLID--YVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIK----QAVDLPVFHAGRIRDP 297 (343)
T ss_pred CCCHHHHHHHHHHHHhcCCCC--EEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHH----HHcCCCEEeeCCCCCH
Confidence 689999999999999876 43 554 11 11 11 233334443 3678999998888999
Q ss_pred HHHHHHHHcCCCcEEEeC
Q 014285 317 NDVQKVMQENLASVVNIK 334 (427)
Q Consensus 317 ~~~~~ll~~~a~~~i~lk 334 (427)
++..++++.+.+|.|.+=
T Consensus 298 ~~~~~~l~~~~~D~V~~g 315 (343)
T cd04734 298 AEAEQALAAGHADMVGMT 315 (343)
T ss_pred HHHHHHHHcCCCCeeeec
Confidence 999999998889987653
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.065 Score=52.35 Aligned_cols=133 Identities=18% Similarity=0.200 Sum_probs=92.4
Q ss_pred ceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC-----------CchhhHHHHHHHHHhCCCcEEEEeCCCCCCHH
Q 014285 193 SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-----------NITADFDVLQAIHAVHPHCSFILDANEGYTSE 261 (427)
Q Consensus 193 ~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~-----------~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~ 261 (427)
..|+..++...+++++.+.++.+.+.|+..|-+.++. +++.-.+.++++|+.. ++.+.+-.+..++.+
T Consensus 98 ~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~ 176 (289)
T cd02810 98 GQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV-DIPLLVKLSPYFDLE 176 (289)
T ss_pred CCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc-CCCEEEEeCCCCCHH
Confidence 3566667766788888888888888899999998873 1122235677788744 667888888889999
Q ss_pred HHHHHHHHhhhCCCCCceEeCC---------------CCCC-------------ChhhHHHHHHhhcccc--CCeEEecC
Q 014285 262 EAVEVLGKLNDMGVIPVLFEQP---------------VHRD-------------DWSGLHDVSNFARDTY--GISVVADE 311 (427)
Q Consensus 262 ~A~~~l~~L~~~~l~~~~iEqP---------------~~~~-------------d~~~~~~L~~~~r~~~--~iPIa~dE 311 (427)
+..+.++.+.+.+.. +|.=+ .... .++..+++++ .. ++||...=
T Consensus 177 ~~~~~a~~l~~~Gad--~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~----~~~~~ipiia~G 250 (289)
T cd02810 177 DIVELAKAAERAGAD--GLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAA----RLQLDIPIIGVG 250 (289)
T ss_pred HHHHHHHHHHHcCCC--EEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHH----hcCCCCCEEEEC
Confidence 999999999988764 55421 1000 1222344443 45 68888877
Q ss_pred CCCCHHHHHHHHHcCCCcEEEe
Q 014285 312 SCRSLNDVQKVMQENLASVVNI 333 (427)
Q Consensus 312 ~~~~~~~~~~ll~~~a~~~i~l 333 (427)
-+.+..++.+++..+ +|.+++
T Consensus 251 GI~~~~da~~~l~~G-Ad~V~v 271 (289)
T cd02810 251 GIDSGEDVLEMLMAG-ASAVQV 271 (289)
T ss_pred CCCCHHHHHHHHHcC-ccHheE
Confidence 888888888888866 666655
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.13 Score=51.06 Aligned_cols=138 Identities=17% Similarity=0.201 Sum_probs=93.6
Q ss_pred CCceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCC----------------chhhHHHHHHHHHhCCCcEEEEeC
Q 014285 191 SNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRN----------------ITADFDVLQAIHAVHPHCSFILDA 254 (427)
Q Consensus 191 ~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~----------------~~~d~~~l~~ir~~~~~~~L~vDA 254 (427)
....|+...+...+++++.+.++.+.+.||..|-+..|.. ++.-.+.+++||+..+ +.+.|-.
T Consensus 60 ~~~~p~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~-~pv~vKi 138 (319)
T TIGR00737 60 EDETPISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVD-IPVTVKI 138 (319)
T ss_pred CccceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcC-CCEEEEE
Confidence 3456777788888999999888888888999999988731 1223456677777421 2333333
Q ss_pred CCCCC--HHHHHHHHHHhhhCCCCCceEe-------CCCC-CCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHH
Q 014285 255 NEGYT--SEEAVEVLGKLNDMGVIPVLFE-------QPVH-RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQ 324 (427)
Q Consensus 255 N~~~s--~~~A~~~l~~L~~~~l~~~~iE-------qP~~-~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~ 324 (427)
..+|+ ..+..++++.|++.++. +|- +-.. +.+|+..+++++ ..++||...=.+.+..++.++++
T Consensus 139 r~g~~~~~~~~~~~a~~l~~~G~d--~i~vh~r~~~~~~~~~~~~~~i~~i~~----~~~ipvi~nGgI~~~~da~~~l~ 212 (319)
T TIGR00737 139 RIGWDDAHINAVEAARIAEDAGAQ--AVTLHGRTRAQGYSGEANWDIIARVKQ----AVRIPVIGNGDIFSPEDAKAMLE 212 (319)
T ss_pred EcccCCCcchHHHHHHHHHHhCCC--EEEEEcccccccCCCchhHHHHHHHHH----cCCCcEEEeCCCCCHHHHHHHHH
Confidence 33443 23456788888887753 331 1111 235666667764 67899999999999999999997
Q ss_pred cCCCcEEEeCC
Q 014285 325 ENLASVVNIKL 335 (427)
Q Consensus 325 ~~a~~~i~lk~ 335 (427)
...+|.+++=-
T Consensus 213 ~~gad~VmigR 223 (319)
T TIGR00737 213 TTGCDGVMIGR 223 (319)
T ss_pred hhCCCEEEECh
Confidence 77799888743
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.24 Score=49.31 Aligned_cols=145 Identities=12% Similarity=0.191 Sum_probs=99.0
Q ss_pred hhCCCCCceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC----------------CchhhHHHHHHHHHhC--C-
Q 014285 186 LFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAVH--P- 246 (427)
Q Consensus 186 Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~----------------~~~~d~~~l~~ir~~~--~- 246 (427)
++.-.....|+...+...+++++.+.++...+.||..|-+..|. +++.-.+.++++++.. |
T Consensus 47 ~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PV 126 (318)
T TIGR00742 47 ILKFSPEESPVALQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPV 126 (318)
T ss_pred HcccCCCCCcEEEEEccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCe
Confidence 44433445677778888899999888888777899999998873 2333456678888742 3
Q ss_pred CcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceE--------eCCCC--------CCChhhHHHHHHhhcccc-CCeEEe
Q 014285 247 HCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF--------EQPVH--------RDDWSGLHDVSNFARDTY-GISVVA 309 (427)
Q Consensus 247 ~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~i--------EqP~~--------~~d~~~~~~L~~~~r~~~-~iPIa~ 309 (427)
.+++|+-.+..=+.+++.++++.+++.++. +| .|-.. +-+|+..+++++ .. .+||.+
T Consensus 127 svKiR~g~~~~~~~~~~~~~~~~l~~~G~~--~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~----~~~~ipVi~ 200 (318)
T TIGR00742 127 TVKHRIGIDPLDSYEFLCDFVEIVSGKGCQ--NFIVHARKAWLSGLSPKENREIPPLRYERVYQLKK----DFPHLTIEI 200 (318)
T ss_pred EEEEecCCCCcchHHHHHHHHHHHHHcCCC--EEEEeCCchhhcCCCccccccCCchhHHHHHHHHH----hCCCCcEEE
Confidence 456665221111457788999999887764 44 23322 126777777764 34 799998
Q ss_pred cCCCCCHHHHHHHHHcCCCcEEEeCCCCc
Q 014285 310 DESCRSLNDVQKVMQENLASVVNIKLAKF 338 (427)
Q Consensus 310 dE~~~~~~~~~~ll~~~a~~~i~lk~~~~ 338 (427)
.=.+.+..|+.+++. .+|.+++==..+
T Consensus 201 NGdI~s~~da~~~l~--g~dgVMigRgal 227 (318)
T TIGR00742 201 NGGIKNSEQIKQHLS--HVDGVMVGREAY 227 (318)
T ss_pred ECCcCCHHHHHHHHh--CCCEEEECHHHH
Confidence 889999999999885 588887744433
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.21 Score=49.21 Aligned_cols=132 Identities=17% Similarity=0.247 Sum_probs=89.9
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcC-CcEEEEecc--------C----CchhhHHHHHHHHHhCCCcEEEEeCCCCCCH
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLG-FSTLKLNVG--------R----NITADFDVLQAIHAVHPHCSFILDANEGYTS 260 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~G-f~~iKlKiG--------~----~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~ 260 (427)
.|+..++...++++..+.++.+.+.| |..|-+.++ . +.+.-.+.+++||+.. ++.+.|--+. +.
T Consensus 92 ~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~--~~ 168 (301)
T PRK07259 92 TPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTP--NV 168 (301)
T ss_pred CcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcCC--Cc
Confidence 45667777778999988888888888 999998653 1 2344456678888754 5556665553 34
Q ss_pred HHHHHHHHHhhhCCCCCceEe---------------CCC-------------CCCChhhHHHHHHhhccccCCeEEecCC
Q 014285 261 EEAVEVLGKLNDMGVIPVLFE---------------QPV-------------HRDDWSGLHDVSNFARDTYGISVVADES 312 (427)
Q Consensus 261 ~~A~~~l~~L~~~~l~~~~iE---------------qP~-------------~~~d~~~~~~L~~~~r~~~~iPIa~dE~ 312 (427)
++..++++.+++.++. .|. +|. .+-.++..+++++ .+++||...=.
T Consensus 169 ~~~~~~a~~l~~~G~d--~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~----~~~ipvi~~GG 242 (301)
T PRK07259 169 TDIVEIAKAAEEAGAD--GLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQ----AVDIPIIGMGG 242 (301)
T ss_pred hhHHHHHHHHHHcCCC--EEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHH----hCCCCEEEECC
Confidence 5777888888876653 221 111 1112344455543 57899999889
Q ss_pred CCCHHHHHHHHHcCCCcEEEeCC
Q 014285 313 CRSLNDVQKVMQENLASVVNIKL 335 (427)
Q Consensus 313 ~~~~~~~~~ll~~~a~~~i~lk~ 335 (427)
+.+.+++.+++..+ +|.+++=-
T Consensus 243 I~~~~da~~~l~aG-Ad~V~igr 264 (301)
T PRK07259 243 ISSAEDAIEFIMAG-ASAVQVGT 264 (301)
T ss_pred CCCHHHHHHHHHcC-CCceeEcH
Confidence 99999999999877 68887643
|
|
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.26 Score=46.76 Aligned_cols=131 Identities=12% Similarity=0.124 Sum_probs=92.0
Q ss_pred ceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC----------------CchhhHHHHHHHHHhC-C-CcEEEEeC
Q 014285 193 SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAVH-P-HCSFILDA 254 (427)
Q Consensus 193 ~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~----------------~~~~d~~~l~~ir~~~-~-~~~L~vDA 254 (427)
++|+..+++..+++++.+.++.. +.++..|-+..|. +++.-.+.++++++.. | -+++|++
T Consensus 67 ~~~vivnv~~~~~ee~~~~a~~v-~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~- 144 (231)
T TIGR00736 67 RALVSVNVRFVDLEEAYDVLLTI-AEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGN- 144 (231)
T ss_pred cCCEEEEEecCCHHHHHHHHHHH-hcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCC-
Confidence 34666778888999988777665 6689999988763 3344455566666532 2 3445543
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCC---ChhhHHHHHHhhcccc-CCeEEecCCCCCHHHHHHHHHcCCCcE
Q 014285 255 NEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRD---DWSGLHDVSNFARDTY-GISVVADESCRSLNDVQKVMQENLASV 330 (427)
Q Consensus 255 N~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~---d~~~~~~L~~~~r~~~-~iPIa~dE~~~~~~~~~~ll~~~a~~~ 330 (427)
|+..+.+++++.+++.+....-|.+=.+.. +|+.++++++ .. ++||.+.=.+.+.+|+.++++. .+|.
T Consensus 145 ---~~~~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~----~~~~ipIIgNGgI~s~eda~e~l~~-GAd~ 216 (231)
T TIGR00736 145 ---CIPLDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSE----EFNDKIIIGNNSIDDIESAKEMLKA-GADF 216 (231)
T ss_pred ---CCcchHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHH----hcCCCcEEEECCcCCHHHHHHHHHh-CCCe
Confidence 455667889999998876534566544332 5777888875 45 4999999999999999999986 4777
Q ss_pred EEe
Q 014285 331 VNI 333 (427)
Q Consensus 331 i~l 333 (427)
+++
T Consensus 217 Vmv 219 (231)
T TIGR00736 217 VSV 219 (231)
T ss_pred EEE
Confidence 775
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >PRK10605 N-ethylmaleimide reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.13 Score=52.16 Aligned_cols=121 Identities=12% Similarity=0.180 Sum_probs=78.4
Q ss_pred HHHHHHhhcCCcEEEEeccC------------Cchh-------------hHHHHHHHHH-hCCC-cEEEEe-------CC
Q 014285 210 ELASKYCKLGFSTLKLNVGR------------NITA-------------DFDVLQAIHA-VHPH-CSFILD-------AN 255 (427)
Q Consensus 210 ~~~~~~~~~Gf~~iKlKiG~------------~~~~-------------d~~~l~~ir~-~~~~-~~L~vD-------AN 255 (427)
+.|+..+++||..+-+..+. +-.. =++.+++||+ ++++ +-+|+- ..
T Consensus 163 ~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~ 242 (362)
T PRK10605 163 QAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNVD 242 (362)
T ss_pred HHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccccCC
Confidence 44666778999999999762 1111 2567899998 4655 444552 24
Q ss_pred CCCCHHH-HHHHHHHhhhCCCCCceEeCCCCC--CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEE
Q 014285 256 EGYTSEE-AVEVLGKLNDMGVIPVLFEQPVHR--DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVN 332 (427)
Q Consensus 256 ~~~s~~~-A~~~l~~L~~~~l~~~~iEqP~~~--~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~ 332 (427)
++++.+| ++++++.|++.++. +|+=-... +...-...+++.+++.+++||...-. .++...+++++.+.+|.|-
T Consensus 243 ~G~~~~e~~~~~~~~L~~~giD--~i~vs~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~-~~~~~ae~~i~~G~~D~V~ 319 (362)
T PRK10605 243 NGPNEEADALYLIEQLGKRGIA--YLHMSEPDWAGGEPYSDAFREKVRARFHGVIIGAGA-YTAEKAETLIGKGLIDAVA 319 (362)
T ss_pred CCCCHHHHHHHHHHHHHHcCCC--EEEeccccccCCccccHHHHHHHHHHCCCCEEEeCC-CCHHHHHHHHHcCCCCEEE
Confidence 5689888 89999999987763 56522110 00000122333333467888887655 4888899999999888865
Q ss_pred e
Q 014285 333 I 333 (427)
Q Consensus 333 l 333 (427)
+
T Consensus 320 ~ 320 (362)
T PRK10605 320 F 320 (362)
T ss_pred E
Confidence 4
|
|
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.19 Score=50.88 Aligned_cols=119 Identities=21% Similarity=0.299 Sum_probs=76.8
Q ss_pred HHHHHHHhhcCCcEEEEeccC---------------------Cch----hhHHHHHHHHH-hCCCc--EEEEeC------
Q 014285 209 SELASKYCKLGFSTLKLNVGR---------------------NIT----ADFDVLQAIHA-VHPHC--SFILDA------ 254 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG~---------------------~~~----~d~~~l~~ir~-~~~~~--~L~vDA------ 254 (427)
.+.|+..++.||..|-+..+. +++ --++.+++||+ ++++. .+|+-+
T Consensus 147 ~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~ 226 (361)
T cd04747 147 ARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDY 226 (361)
T ss_pred HHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECccccccc
Confidence 344566678899999999753 111 12567899999 47774 344432
Q ss_pred --CCCCCHHHHHHHHHHhhhCCCCCceEe-------CCC-CCCChhhHHHHHHhhccccCCeEEecCCC-----------
Q 014285 255 --NEGYTSEEAVEVLGKLNDMGVIPVLFE-------QPV-HRDDWSGLHDVSNFARDTYGISVVADESC----------- 313 (427)
Q Consensus 255 --N~~~s~~~A~~~l~~L~~~~l~~~~iE-------qP~-~~~d~~~~~~L~~~~r~~~~iPIa~dE~~----------- 313 (427)
.++.+++++.++++.|++.++. +|+ +|. ...++..-+++. +..++||..-=.+
T Consensus 227 ~~~~g~~~~e~~~~~~~l~~~gvd--~i~vs~g~~~~~~~~~~~~~~~~~~k----~~~~~pv~~~G~i~~~~~~~~~~~ 300 (361)
T cd04747 227 TARLADTPDELEALLAPLVDAGVD--IFHCSTRRFWEPEFEGSELNLAGWTK----KLTGLPTITVGSVGLDGDFIGAFA 300 (361)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCC--EEEecCCCccCCCcCccchhHHHHHH----HHcCCCEEEECCcccccccccccc
Confidence 1257899999999999887753 443 232 111222222233 3578888775554
Q ss_pred -------CCHHHHHHHHHcCCCcEEEe
Q 014285 314 -------RSLNDVQKVMQENLASVVNI 333 (427)
Q Consensus 314 -------~~~~~~~~ll~~~a~~~i~l 333 (427)
.++.+.+++++.+.+|.|.+
T Consensus 301 ~~~~~~~~~~~~a~~~l~~g~~D~V~~ 327 (361)
T cd04747 301 GDEGASPASLDRLLERLERGEFDLVAV 327 (361)
T ss_pred cccccccCCHHHHHHHHHCCCCCeehh
Confidence 58888999999888888554
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.2 Score=50.34 Aligned_cols=118 Identities=15% Similarity=0.174 Sum_probs=78.9
Q ss_pred HHHHHHhhcCCcEEEEeccC---------------------Cchh----hHHHHHHHHHhCC-CcEEEEe----CCCCCC
Q 014285 210 ELASKYCKLGFSTLKLNVGR---------------------NITA----DFDVLQAIHAVHP-HCSFILD----ANEGYT 259 (427)
Q Consensus 210 ~~~~~~~~~Gf~~iKlKiG~---------------------~~~~----d~~~l~~ir~~~~-~~~L~vD----AN~~~s 259 (427)
+.|+...++||..+-+..|. +++. -.+.+++||+.-+ -+.+++- .+++++
T Consensus 146 ~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~ 225 (337)
T PRK13523 146 QAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGLT 225 (337)
T ss_pred HHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCC
Confidence 44566678999999999872 1111 2456788888422 2334433 356889
Q ss_pred HHHHHHHHHHhhhCCCCCceEeC--------CCC--C-CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCC
Q 014285 260 SEEAVEVLGKLNDMGVIPVLFEQ--------PVH--R-DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLA 328 (427)
Q Consensus 260 ~~~A~~~l~~L~~~~l~~~~iEq--------P~~--~-~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~ 328 (427)
+++++++++.|++.++. ||+= +.. + .+++..++++ +..++||..-=.+.+..+.+++|+.+.+
T Consensus 226 ~~e~~~i~~~l~~~gvD--~i~vs~g~~~~~~~~~~~~~~~~~~~~ik----~~~~ipVi~~G~i~~~~~a~~~l~~g~~ 299 (337)
T PRK13523 226 VQDYVQYAKWMKEQGVD--LIDVSSGAVVPARIDVYPGYQVPFAEHIR----EHANIATGAVGLITSGAQAEEILQNNRA 299 (337)
T ss_pred HHHHHHHHHHHHHcCCC--EEEeCCCCCCCCCCCCCccccHHHHHHHH----hhcCCcEEEeCCCCCHHHHHHHHHcCCC
Confidence 99999999999987763 5531 111 1 1233333443 4678998877788899999999999888
Q ss_pred cEEEe
Q 014285 329 SVVNI 333 (427)
Q Consensus 329 ~~i~l 333 (427)
|.|.+
T Consensus 300 D~V~~ 304 (337)
T PRK13523 300 DLIFI 304 (337)
T ss_pred ChHHh
Confidence 87543
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.21 Score=55.79 Aligned_cols=122 Identities=20% Similarity=0.309 Sum_probs=81.8
Q ss_pred HHHHHHhhcCCcEEEEeccC---------------------Cch----hhHHHHHHHHHh-CCC--cEEEEeC----CCC
Q 014285 210 ELASKYCKLGFSTLKLNVGR---------------------NIT----ADFDVLQAIHAV-HPH--CSFILDA----NEG 257 (427)
Q Consensus 210 ~~~~~~~~~Gf~~iKlKiG~---------------------~~~----~d~~~l~~ir~~-~~~--~~L~vDA----N~~ 257 (427)
+.++..++.||..|-+..|. +++ --++.+++||+. +++ +.+++-+ +++
T Consensus 555 ~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g 634 (765)
T PRK08255 555 AAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGG 634 (765)
T ss_pred HHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCCC
Confidence 44566678999999999871 111 125678999995 666 3444443 468
Q ss_pred CCHHHHHHHHHHhhhCCCCCceEeC--CCCCC----Ch-hhH-HHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCc
Q 014285 258 YTSEEAVEVLGKLNDMGVIPVLFEQ--PVHRD----DW-SGL-HDVSNFARDTYGISVVADESCRSLNDVQKVMQENLAS 329 (427)
Q Consensus 258 ~s~~~A~~~l~~L~~~~l~~~~iEq--P~~~~----d~-~~~-~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~ 329 (427)
|+.++++++++.|++.++. ||+= +.... .+ ..+ ..+++.+++..++||..-=.+.+..+.+++++.+.+|
T Consensus 635 ~~~~~~~~~~~~l~~~g~d--~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~D 712 (765)
T PRK08255 635 NTPDDAVEIARAFKAAGAD--LIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAISEADHVNSIIAAGRAD 712 (765)
T ss_pred CCHHHHHHHHHHHHhcCCc--EEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcCCcc
Confidence 9999999999999988764 5541 10000 00 011 1222333346789999888889999999999999999
Q ss_pred EEEe
Q 014285 330 VVNI 333 (427)
Q Consensus 330 ~i~l 333 (427)
.|.+
T Consensus 713 ~v~~ 716 (765)
T PRK08255 713 LCAL 716 (765)
T ss_pred eeeE
Confidence 8766
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.26 Score=47.38 Aligned_cols=153 Identities=12% Similarity=0.119 Sum_probs=104.2
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCC--CcEEEEeCCCC--------------
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHP--HCSFILDANEG-------------- 257 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~--~~~L~vDAN~~-------------- 257 (427)
+|+-...++.+.+++.+ +.+.|... +=+|...-++.+.++.+.+.++ .+.+.+|+++.
T Consensus 75 ~pv~~~GGi~s~~d~~~----~~~~Ga~~--vivgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~g 148 (254)
T TIGR00735 75 IPLTVGGGIKSIEDVDK----LLRAGADK--VSINTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYG 148 (254)
T ss_pred CCEEEECCCCCHHHHHH----HHHcCCCE--EEEChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeC
Confidence 55556667778776543 44567554 4567655567888888888764 58899997533
Q ss_pred C---CHHHHHHHHHHhhhCCCCCceEeCCCCC------CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCC
Q 014285 258 Y---TSEEAVEVLGKLNDMGVIPVLFEQPVHR------DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLA 328 (427)
Q Consensus 258 ~---s~~~A~~~l~~L~~~~l~~~~iEqP~~~------~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~ 328 (427)
| +..+..++++.+.+.++.-.-+ ..+.. -|++.++++++ .+++||.+-=-+.+.+++.++++.+.+
T Consensus 149 w~~~~~~~~~~~~~~l~~~G~~~iiv-t~i~~~g~~~g~~~~~~~~i~~----~~~ipvia~GGi~s~~di~~~~~~g~~ 223 (254)
T TIGR00735 149 GRESTGLDAVEWAKEVEKLGAGEILL-TSMDKDGTKSGYDLELTKAVSE----AVKIPVIASGGAGKPEHFYEAFTKGKA 223 (254)
T ss_pred CcccCCCCHHHHHHHHHHcCCCEEEE-eCcCcccCCCCCCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcCCc
Confidence 2 2455678888888877641111 12222 25666677765 578999888888999999999998878
Q ss_pred cEEEeCCCCc-cHHHHHHHHHHHHHcCCcE
Q 014285 329 SVVNIKLAKF-GVLGTLQIIKATRKSGLHL 357 (427)
Q Consensus 329 ~~i~lk~~~~-Gi~~~~~~~~~A~~~gi~~ 357 (427)
+.+.+--... |-....++.+.++++|+++
T Consensus 224 dgv~~g~a~~~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 224 DAALAASVFHYREITIGEVKEYLAERGIPV 253 (254)
T ss_pred ceeeEhHHHhCCCCCHHHHHHHHHHCCCcc
Confidence 8877755444 5223567778888888875
|
|
| >COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.33 Score=49.17 Aligned_cols=125 Identities=19% Similarity=0.230 Sum_probs=81.0
Q ss_pred HHHHHHHhhcCCcEEEEeccC---------------------Cch----hhHHHHHHHHH-hCCC--cEEEEeC----C-
Q 014285 209 SELASKYCKLGFSTLKLNVGR---------------------NIT----ADFDVLQAIHA-VHPH--CSFILDA----N- 255 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG~---------------------~~~----~d~~~l~~ir~-~~~~--~~L~vDA----N- 255 (427)
.+.++..+++||..+-|.-.. +++ --++.+++||+ ++++ +-+|+=+ +
T Consensus 152 ~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~ 231 (363)
T COG1902 152 ARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDG 231 (363)
T ss_pred HHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCC
Confidence 344666778999999999742 111 13667899998 4766 4555533 2
Q ss_pred CCCCHHHHHHHHHHhhhCC-CCCc----eEeCCCCCCChh--h-HHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCC
Q 014285 256 EGYTSEEAVEVLGKLNDMG-VIPV----LFEQPVHRDDWS--G-LHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL 327 (427)
Q Consensus 256 ~~~s~~~A~~~l~~L~~~~-l~~~----~iEqP~~~~d~~--~-~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a 327 (427)
++|+.+++.++++.|++.+ +... |-..+-..-... + ...+++.++....+|+.+--...+++...++++.+.
T Consensus 232 ~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~ 311 (363)
T COG1902 232 GGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASGR 311 (363)
T ss_pred CCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCC
Confidence 3789999999999999988 3311 112221111111 1 112222223356799998888999999999999988
Q ss_pred CcEEEe
Q 014285 328 ASVVNI 333 (427)
Q Consensus 328 ~~~i~l 333 (427)
+|.|-+
T Consensus 312 aDlVa~ 317 (363)
T COG1902 312 ADLVAM 317 (363)
T ss_pred CCEEEe
Confidence 887654
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.58 Score=45.89 Aligned_cols=135 Identities=19% Similarity=0.249 Sum_probs=88.1
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC------------CchhhHHHHHHHHHhCCCcEEEEeCCCCCCHH
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR------------NITADFDVLQAIHAVHPHCSFILDANEGYTSE 261 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~------------~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~ 261 (427)
.|+..++...+++++.+.++...+.|+..|-+.++- +++.-.+.++++|+.. ++.+.+--+. +.+
T Consensus 90 ~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~-~~Pv~vKl~~--~~~ 166 (296)
T cd04740 90 TPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT-DVPVIVKLTP--NVT 166 (296)
T ss_pred CcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc-CCCEEEEeCC--Cch
Confidence 455566666788888888888888899999997752 2333456778888753 3444444332 334
Q ss_pred HHHHHHHHhhhCCCCCceE-------------e--CCC-------------CCCChhhHHHHHHhhccccCCeEEecCCC
Q 014285 262 EAVEVLGKLNDMGVIPVLF-------------E--QPV-------------HRDDWSGLHDVSNFARDTYGISVVADESC 313 (427)
Q Consensus 262 ~A~~~l~~L~~~~l~~~~i-------------E--qP~-------------~~~d~~~~~~L~~~~r~~~~iPIa~dE~~ 313 (427)
+..++++.+.+.+.. .| + .|. .+-.++..+++++ .+++||...=.+
T Consensus 167 ~~~~~a~~~~~~G~d--~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~----~~~ipii~~GGI 240 (296)
T cd04740 167 DIVEIARAAEEAGAD--GLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYK----AVEIPIIGVGGI 240 (296)
T ss_pred hHHHHHHHHHHcCCC--EEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHH----hcCCCEEEECCC
Confidence 667777777776542 22 1 121 1112344445543 578999998899
Q ss_pred CCHHHHHHHHHcCCCcEEEeCCCCc
Q 014285 314 RSLNDVQKVMQENLASVVNIKLAKF 338 (427)
Q Consensus 314 ~~~~~~~~ll~~~a~~~i~lk~~~~ 338 (427)
.+..++.++++.+ +|.+++=-..+
T Consensus 241 ~~~~da~~~l~~G-Ad~V~igra~l 264 (296)
T cd04740 241 ASGEDALEFLMAG-ASAVQVGTANF 264 (296)
T ss_pred CCHHHHHHHHHcC-CCEEEEchhhh
Confidence 9999999999987 69888755443
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.2 Score=47.91 Aligned_cols=103 Identities=13% Similarity=0.107 Sum_probs=78.3
Q ss_pred cCCCHHHHHHHHHHHhhcCCcEEEEe-------cc-------CCchhhHHHHHHHHHh--C-CCcE--EEEeCCCC--CC
Q 014285 201 PAVSPAEASELASKYCKLGFSTLKLN-------VG-------RNITADFDVLQAIHAV--H-PHCS--FILDANEG--YT 259 (427)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~Gf~~iKlK-------iG-------~~~~~d~~~l~~ir~~--~-~~~~--L~vDAN~~--~s 259 (427)
+..+++.+.+.++++.+.|...+|+- .| .+.++-.++++++++. . +++. -|.|+-.. .+
T Consensus 79 G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~ 158 (243)
T cd00377 79 GYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEG 158 (243)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCC
Confidence 34577778888889999999999992 22 1566778889999884 3 3543 46777544 78
Q ss_pred HHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEec
Q 014285 260 SEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVAD 310 (427)
Q Consensus 260 ~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~d 310 (427)
.++|++.+++..+.|-...|+|-|. +.+.++++++ ..+.|+..-
T Consensus 159 ~~eai~Ra~ay~~AGAD~v~v~~~~---~~~~~~~~~~----~~~~Pl~~~ 202 (243)
T cd00377 159 LDEAIERAKAYAEAGADGIFVEGLK---DPEEIRAFAE----APDVPLNVN 202 (243)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCC---CHHHHHHHHh----cCCCCEEEE
Confidence 9999999999999876667999887 5688888886 577888764
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=94.96 E-value=1.1 Score=42.50 Aligned_cols=130 Identities=11% Similarity=0.176 Sum_probs=85.5
Q ss_pred eeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC----------------CchhhHHHHHHHHHhCCCcEEEEeCCCCC
Q 014285 195 STAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAVHPHCSFILDANEGY 258 (427)
Q Consensus 195 p~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~----------------~~~~d~~~l~~ir~~~~~~~L~vDAN~~~ 258 (427)
|+..++...+++++.+.++...+ +...|-+..|. +++.-.+.++++|+. ++.+.|=-..+|
T Consensus 74 p~~vqi~g~~~~~~~~aa~~~~~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~--~~pVsvKir~g~ 150 (233)
T cd02911 74 LVGVNVRSSSLEPLLNAAALVAK-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKET--GVPVSVKIRAGV 150 (233)
T ss_pred eEEEEecCCCHHHHHHHHHHHhh-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhc--CCCEEEEEcCCc
Confidence 55567777789998877776644 45888887772 233345667788874 344444444457
Q ss_pred CHHHHHHHHHHhhhCCCCCceEeCCC--CCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCC
Q 014285 259 TSEEAVEVLGKLNDMGVIPVLFEQPV--HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKL 335 (427)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqP~--~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~ 335 (427)
+ ++..++++.+++.+....-+.+-. ..-||+..+++ ..++||.+.=.+.+.+++.++++.+ +|.+++--
T Consensus 151 ~-~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i------~~~ipVIgnGgI~s~eda~~~l~~G-aD~VmiGR 221 (233)
T cd02911 151 D-VDDEELARLIEKAGADIIHVDAMDPGNHADLKKIRDI------STELFIIGNNSVTTIESAKEMFSYG-ADMVSVAR 221 (233)
T ss_pred C-cCHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHh------cCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEcC
Confidence 6 677888888988765411222211 12245444444 2579999999999999999999865 88888743
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.92 Score=45.56 Aligned_cols=118 Identities=14% Similarity=0.189 Sum_probs=79.0
Q ss_pred HHHHHHHhhcCCcEEEEeccC------------C---------ch----hhHHHHHHHHH-hCCC-cEEEEeCC------
Q 014285 209 SELASKYCKLGFSTLKLNVGR------------N---------IT----ADFDVLQAIHA-VHPH-CSFILDAN------ 255 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG~------------~---------~~----~d~~~l~~ir~-~~~~-~~L~vDAN------ 255 (427)
.+.++.+++.||..|-+..+. + ++ --++.+++||+ ++++ +.+++-+.
T Consensus 155 ~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~ 234 (338)
T cd02933 155 RQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDM 234 (338)
T ss_pred HHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCC
Confidence 344666778999999999763 1 11 12567899998 4653 55566443
Q ss_pred -CCCCHHHHHHHHHHhhhCCCCCceEeC--CC-----CCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCC
Q 014285 256 -EGYTSEEAVEVLGKLNDMGVIPVLFEQ--PV-----HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL 327 (427)
Q Consensus 256 -~~~s~~~A~~~l~~L~~~~l~~~~iEq--P~-----~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a 327 (427)
.+.+.++++++++.|++.++. +|+= .. ...+++..++++ +.+++||..-=.+. ..+..++++.+.
T Consensus 235 ~~~~~~ee~~~~~~~l~~~g~d--~i~vs~g~~~~~~~~~~~~~~~~ik----~~~~ipvi~~G~i~-~~~a~~~l~~g~ 307 (338)
T cd02933 235 GDSDPEATFSYLAKELNKRGLA--YLHLVEPRVAGNPEDQPPDFLDFLR----KAFKGPLIAAGGYD-AESAEAALADGK 307 (338)
T ss_pred CCCCCHHHHHHHHHHHHHcCCc--EEEEecCCCCCcccccchHHHHHHH----HHcCCCEEEECCCC-HHHHHHHHHcCC
Confidence 245889999999999887653 4442 11 112333344444 36789998776665 888999999988
Q ss_pred CcEEEe
Q 014285 328 ASVVNI 333 (427)
Q Consensus 328 ~~~i~l 333 (427)
+|.|.+
T Consensus 308 ~D~V~~ 313 (338)
T cd02933 308 ADLVAF 313 (338)
T ss_pred CCEEEe
Confidence 998765
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.58 Score=47.27 Aligned_cols=117 Identities=15% Similarity=0.282 Sum_probs=74.9
Q ss_pred HHHHHHHhhcCCcEEEEeccC---------------------Cchh----hHHHHHHHHH-hC----CCcE--EEEeC--
Q 014285 209 SELASKYCKLGFSTLKLNVGR---------------------NITA----DFDVLQAIHA-VH----PHCS--FILDA-- 254 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG~---------------------~~~~----d~~~l~~ir~-~~----~~~~--L~vDA-- 254 (427)
.+.|+..++.||..|-+..+. +++. -.+.+++||+ ++ +++. +|+.+
T Consensus 147 ~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~ 226 (353)
T cd04735 147 GEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEE 226 (353)
T ss_pred HHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECccc
Confidence 344666678999999998741 1221 2457889998 46 5644 44433
Q ss_pred --CCCCCHHHHHHHHHHhhhCCCCCceEe-------CCCC---CCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHH
Q 014285 255 --NEGYTSEEAVEVLGKLNDMGVIPVLFE-------QPVH---RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKV 322 (427)
Q Consensus 255 --N~~~s~~~A~~~l~~L~~~~l~~~~iE-------qP~~---~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~l 322 (427)
.++++.++++++++.|++.++. ||+ .+.. ...+...+.+.+.. ..++||..-=.+.++++..++
T Consensus 227 ~~~~g~~~ee~~~i~~~L~~~GvD--~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~--~~~iPVi~~Ggi~t~e~ae~~ 302 (353)
T cd04735 227 PEEPGIRMEDTLALVDKLADKGLD--YLHISLWDFDRKSRRGRDDNQTIMELVKERI--AGRLPLIAVGSINTPDDALEA 302 (353)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCC--EEEeccCccccccccCCcchHHHHHHHHHHh--CCCCCEEEECCCCCHHHHHHH
Confidence 4578999999999999998864 665 1111 11223334444311 136888877778888888888
Q ss_pred HHcCCCcE
Q 014285 323 MQENLASV 330 (427)
Q Consensus 323 l~~~a~~~ 330 (427)
++.+ +|.
T Consensus 303 l~~g-aD~ 309 (353)
T cd04735 303 LETG-ADL 309 (353)
T ss_pred HHcC-CCh
Confidence 8873 665
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.94 Score=44.51 Aligned_cols=153 Identities=17% Similarity=0.199 Sum_probs=96.2
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhc--CCcEEEEeccC------------CchhhHHHHHHHHHhCCCcEEEEeCCCCCC
Q 014285 194 LSTAITIPAVSPAEASELASKYCKL--GFSTLKLNVGR------------NITADFDVLQAIHAVHPHCSFILDANEGYT 259 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~--Gf~~iKlKiG~------------~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s 259 (427)
.|+..++...+++++.+.++.+.+. ++..|-+.+|. +++.-.+.++++|+.. ++.+.|.-+. +
T Consensus 91 ~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~-~~pv~vKi~~--~ 167 (300)
T TIGR01037 91 TPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKT-DVPVFAKLSP--N 167 (300)
T ss_pred CcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEECCC--C
Confidence 4555667667889988878777654 38899998872 2333455678888753 3455555553 4
Q ss_pred HHHHHHHHHHhhhCCCCCceEe---------------CCCCCC---------C----hhhHHHHHHhhccccCCeEEecC
Q 014285 260 SEEAVEVLGKLNDMGVIPVLFE---------------QPVHRD---------D----WSGLHDVSNFARDTYGISVVADE 311 (427)
Q Consensus 260 ~~~A~~~l~~L~~~~l~~~~iE---------------qP~~~~---------d----~~~~~~L~~~~r~~~~iPIa~dE 311 (427)
.++..++++.+++.++. .|. +|.... . ++...+++ +..++||...=
T Consensus 168 ~~~~~~~a~~l~~~G~d--~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~----~~~~ipvi~~G 241 (300)
T TIGR01037 168 VTDITEIAKAAEEAGAD--GLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVY----KMVDIPIIGVG 241 (300)
T ss_pred hhhHHHHHHHHHHcCCC--EEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHH----hcCCCCEEEEC
Confidence 46778888888887764 442 111000 0 12233343 36789999988
Q ss_pred CCCCHHHHHHHHHcCCCcEEEeCCCCc--c--HHH-HHHHHHHHHHcCCc
Q 014285 312 SCRSLNDVQKVMQENLASVVNIKLAKF--G--VLG-TLQIIKATRKSGLH 356 (427)
Q Consensus 312 ~~~~~~~~~~ll~~~a~~~i~lk~~~~--G--i~~-~~~~~~~A~~~gi~ 356 (427)
.+.+.+++.+++..+ +|.+++=-..+ | +.. ..++.++.+++|..
T Consensus 242 GI~s~~da~~~l~~G-Ad~V~igr~~l~~p~~~~~i~~~l~~~~~~~g~~ 290 (300)
T TIGR01037 242 GITSFEDALEFLMAG-ASAVQVGTAVYYRGFAFKKIIEGLIAFLKAEGFT 290 (300)
T ss_pred CCCCHHHHHHHHHcC-CCceeecHHHhcCchHHHHHHHHHHHHHHHcCCC
Confidence 999999999999876 88887644333 3 222 23445555666643
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.99 Score=45.91 Aligned_cols=123 Identities=11% Similarity=0.112 Sum_probs=78.0
Q ss_pred HHHHHHHhhcCCcEEEEeccC---------------------Cch----hhHHHHHHHHHh-CCC--cEEEEeCC-----
Q 014285 209 SELASKYCKLGFSTLKLNVGR---------------------NIT----ADFDVLQAIHAV-HPH--CSFILDAN----- 255 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG~---------------------~~~----~d~~~l~~ir~~-~~~--~~L~vDAN----- 255 (427)
.+.|+..++.||..|-+..+. +++ --++.+++||+. +++ +.+|+-+.
T Consensus 153 ~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~ 232 (370)
T cd02929 153 VDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIGP 232 (370)
T ss_pred HHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCC
Confidence 345666778999999999863 011 125678999994 666 45555432
Q ss_pred -CCCCHHHHHHHHHHhhhCCCC-----CceEeCC-CC----CCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHH
Q 014285 256 -EGYTSEEAVEVLGKLNDMGVI-----PVLFEQP-VH----RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQ 324 (427)
Q Consensus 256 -~~~s~~~A~~~l~~L~~~~l~-----~~~iEqP-~~----~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~ 324 (427)
++++.++++++++.|++. +. .-+.+.. .. ++.+ ...+++.+++.+++||..-=.+.++.+..++++
T Consensus 233 ~g~~~~~e~~~~~~~l~~~-~D~i~vs~g~~~~~~~~~~~~~~~~--~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~ 309 (370)
T cd02929 233 GGIESEGEGVEFVEMLDEL-PDLWDVNVGDWANDGEDSRFYPEGH--QEPYIKFVKQVTSKPVVGVGRFTSPDKMVEVVK 309 (370)
T ss_pred CCCCCHHHHHHHHHHHHhh-CCEEEecCCCccccccccccCCccc--cHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHH
Confidence 237899999999999873 11 0011111 10 1111 112222233468899988778889999999999
Q ss_pred cCCCcEEEeC
Q 014285 325 ENLASVVNIK 334 (427)
Q Consensus 325 ~~a~~~i~lk 334 (427)
.+.+|.|.+=
T Consensus 310 ~g~~D~V~~g 319 (370)
T cd02929 310 SGILDLIGAA 319 (370)
T ss_pred cCCCCeeeec
Confidence 9989987653
|
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=94.06 E-value=1.2 Score=42.54 Aligned_cols=153 Identities=14% Similarity=0.152 Sum_probs=97.6
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhC--CCcEEEEeCCC------------CCC
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH--PHCSFILDANE------------GYT 259 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~--~~~~L~vDAN~------------~~s 259 (427)
+|+....++.+.+++.+ +.+.|... +-+|...-.+.+.++.+.+.+ ..+.+.+|+.. +|.
T Consensus 75 ipv~~~GGi~s~~~~~~----~l~~Ga~~--Viigt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~ 148 (253)
T PRK02083 75 IPLTVGGGIRSVEDARR----LLRAGADK--VSINSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGR 148 (253)
T ss_pred CCEEeeCCCCCHHHHHH----HHHcCCCE--EEEChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCc
Confidence 56556667777776544 34557555 455654456677888888865 34778889753 121
Q ss_pred ---HHHHHHHHHHhhhCCCCCceEeCCCC------CCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcE
Q 014285 260 ---SEEAVEVLGKLNDMGVIPVLFEQPVH------RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASV 330 (427)
Q Consensus 260 ---~~~A~~~l~~L~~~~l~~~~iEqP~~------~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~ 330 (427)
.....++++.+.+.++. ..+=.++. --|++.++++++ .+++||...=-+.+..|+.++++...++.
T Consensus 149 ~~~~~~~~~~~~~~~~~g~~-~ii~~~i~~~g~~~g~d~~~i~~~~~----~~~ipvia~GGv~s~~d~~~~~~~~G~~g 223 (253)
T PRK02083 149 KPTGLDAVEWAKEVEELGAG-EILLTSMDRDGTKNGYDLELTRAVSD----AVNVPVIASGGAGNLEHFVEAFTEGGADA 223 (253)
T ss_pred eecCCCHHHHHHHHHHcCCC-EEEEcCCcCCCCCCCcCHHHHHHHHh----hCCCCEEEECCCCCHHHHHHHHHhCCccE
Confidence 12345666777766653 22222222 235777788875 57899988778889999999987655777
Q ss_pred EEeCCCCc-cHHHHHHHHHHHHHcCCcE
Q 014285 331 VNIKLAKF-GVLGTLQIIKATRKSGLHL 357 (427)
Q Consensus 331 i~lk~~~~-Gi~~~~~~~~~A~~~gi~~ 357 (427)
+.+--... |-....++.+.+++.|+++
T Consensus 224 vivg~al~~~~~~~~~~~~~~~~~~~~~ 251 (253)
T PRK02083 224 ALAASIFHFGEITIGELKAYLAEQGIPV 251 (253)
T ss_pred EeEhHHHHcCCCCHHHHHHHHHHCCCcc
Confidence 66644443 5333456667778888875
|
|
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=93.74 E-value=1.1 Score=41.55 Aligned_cols=96 Identities=9% Similarity=0.148 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHhhhCCCCCceEeCCCCCCCh-hhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCC
Q 014285 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW-SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK 337 (427)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~-~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~ 337 (427)
+++++++.++.|-+.+++ .+|=++...+. +.++++++. ...+.|-.+ ++.+.++++++++.+ .+++ +-|+.
T Consensus 18 ~~e~a~~~~~al~~~Gi~--~iEit~~t~~a~~~i~~l~~~---~~~~~vGAG-TVl~~~~a~~a~~aG-A~Fi-vsP~~ 89 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLR--VLEVTLRTPVALDAIRLLRKE---VPDALIGAG-TVLNPEQLRQAVDAG-AQFI-VSPGL 89 (204)
T ss_pred CHHHHHHHHHHHHHcCCC--EEEEeCCCccHHHHHHHHHHH---CCCCEEEEE-eCCCHHHHHHHHHcC-CCEE-ECCCC
Confidence 789999999999999986 89999986554 446677652 224656555 788999999999987 5655 44433
Q ss_pred ccHHHHHHHHHHHHHcCCcEEEcccCchhH
Q 014285 338 FGVLGTLQIIKATRKSGLHLMIDGMIETRL 367 (427)
Q Consensus 338 ~Gi~~~~~~~~~A~~~gi~~~~~s~~es~i 367 (427)
..++++.|+++|++++++++.-|-+
T Consensus 90 -----~~~v~~~~~~~~i~~iPG~~TptEi 114 (204)
T TIGR01182 90 -----TPELAKHAQDHGIPIIPGVATPSEI 114 (204)
T ss_pred -----CHHHHHHHHHcCCcEECCCCCHHHH
Confidence 3588999999999999999875543
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=93.49 E-value=5.2 Score=37.21 Aligned_cols=144 Identities=14% Similarity=0.230 Sum_probs=95.6
Q ss_pred ecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCce
Q 014285 200 IPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVL 279 (427)
Q Consensus 200 i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~ 279 (427)
+...++++..+.++.+.+.|++.+.+..-. ....+.++.+++.+++ .+.|=|..-.+.+++...++.=.+ +
T Consensus 16 ~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~--~~~~~~i~~l~~~~~~-~~~iGaGTV~~~~~~~~a~~aGA~------f 86 (206)
T PRK09140 16 LRGITPDEALAHVGALIEAGFRAIEIPLNS--PDPFDSIAALVKALGD-RALIGAGTVLSPEQVDRLADAGGR------L 86 (206)
T ss_pred EeCCCHHHHHHHHHHHHHCCCCEEEEeCCC--ccHHHHHHHHHHHcCC-CcEEeEEecCCHHHHHHHHHcCCC------E
Confidence 344578899999999999999999998643 2455688888887764 366777777888886555443333 4
Q ss_pred EeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCC-ccHHHHHHHHHHHHHcCCcEE
Q 014285 280 FEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK-FGVLGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 280 iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~-~Gi~~~~~~~~~A~~~gi~~~ 358 (427)
+=-|.. | ....+.++ ..++++..+ +.+..++.++.+.+ +||+.+=|+. .|+....++..... .+++++
T Consensus 87 ivsp~~--~-~~v~~~~~----~~~~~~~~G--~~t~~E~~~A~~~G-ad~vk~Fpa~~~G~~~l~~l~~~~~-~~ipvv 155 (206)
T PRK09140 87 IVTPNT--D-PEVIRRAV----ALGMVVMPG--VATPTEAFAALRAG-AQALKLFPASQLGPAGIKALRAVLP-PDVPVF 155 (206)
T ss_pred EECCCC--C-HHHHHHHH----HCCCcEEcc--cCCHHHHHHHHHcC-CCEEEECCCCCCCHHHHHHHHhhcC-CCCeEE
Confidence 444543 3 33444443 468888887 88999998888765 7999875533 46444444332221 258888
Q ss_pred EcccC
Q 014285 359 IDGMI 363 (427)
Q Consensus 359 ~~s~~ 363 (427)
..+-+
T Consensus 156 aiGGI 160 (206)
T PRK09140 156 AVGGV 160 (206)
T ss_pred EECCC
Confidence 76533
|
|
| >PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside [] | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.48 Score=47.61 Aligned_cols=124 Identities=23% Similarity=0.395 Sum_probs=76.6
Q ss_pred HHHHHHhhcCCcEEEEeccC------------Cchh-------------hHHHHHHHHH-hCCC--cEEEEeCCC----C
Q 014285 210 ELASKYCKLGFSTLKLNVGR------------NITA-------------DFDVLQAIHA-VHPH--CSFILDANE----G 257 (427)
Q Consensus 210 ~~~~~~~~~Gf~~iKlKiG~------------~~~~-------------d~~~l~~ir~-~~~~--~~L~vDAN~----~ 257 (427)
+.|+..+++||..+-+..+. +... -++.+++||+ ++++ +-+|+-+.. +
T Consensus 153 ~AA~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g 232 (341)
T PF00724_consen 153 QAARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVEGG 232 (341)
T ss_dssp HHHHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSSTTS
T ss_pred HHHHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccCCC
Confidence 44666778999999999863 1111 2667899998 5777 477887754 4
Q ss_pred CCHHHHHHHHHHhhhCCCCC--------ceEeCCCC--CCChh-h-HHHHHHhhccccCCeEEecCCCCCHHHHHHHHHc
Q 014285 258 YTSEEAVEVLGKLNDMGVIP--------VLFEQPVH--RDDWS-G-LHDVSNFARDTYGISVVADESCRSLNDVQKVMQE 325 (427)
Q Consensus 258 ~s~~~A~~~l~~L~~~~l~~--------~~iEqP~~--~~d~~-~-~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~ 325 (427)
++.++..++++.+++.++.. .-...|.. +.+.. + ...+++.+++.+.+||..--.+.+.....++++.
T Consensus 233 ~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~~~pvi~~G~i~~~~~ae~~l~~ 312 (341)
T PF00724_consen 233 ITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAVKIPVIGVGGIRTPEQAEKALEE 312 (341)
T ss_dssp HHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHHSSEEEEESSTTHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhcCceEEEEeeecchhhhHHHHhc
Confidence 56777766666665533210 01122322 11111 1 1122333334678999988888888878999999
Q ss_pred CCCcEEEe
Q 014285 326 NLASVVNI 333 (427)
Q Consensus 326 ~a~~~i~l 333 (427)
+.+|.|-+
T Consensus 313 g~~DlV~~ 320 (341)
T PF00724_consen 313 GKADLVAM 320 (341)
T ss_dssp TSTSEEEE
T ss_pred CCceEeec
Confidence 99998765
|
It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A .... |
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.17 E-value=4.8 Score=37.67 Aligned_cols=143 Identities=13% Similarity=0.208 Sum_probs=102.0
Q ss_pred ecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCC-cEEEEeCCCCCCHHHHHHHHHHhhhCCCCCc
Q 014285 200 IPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPH-CSFILDANEGYTSEEAVEVLGKLNDMGVIPV 278 (427)
Q Consensus 200 i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~-~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~ 278 (427)
+...+.++..+.++.+.+.|++++-+-.-. ..-++.++++++.+++ -++.|=|-.-.|++++.+.++. |-.
T Consensus 19 ir~~~~~~a~~~~~al~~~Gi~~iEit~~~--~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~a----GA~-- 90 (213)
T PRK06552 19 VRGESKEEALKISLAVIKGGIKAIEVTYTN--PFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILA----GAQ-- 90 (213)
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEECCC--ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHc----CCC--
Confidence 345688999999999999999999998853 3457788899887654 2688889999999987666553 432
Q ss_pred eEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCc-cHHHHHHHHHHHHHc-CCc
Q 014285 279 LFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKS-GLH 356 (427)
Q Consensus 279 ~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~-Gi~~~~~~~~~A~~~-gi~ 356 (427)
|+=-|.-. .++.+.|+ +.++|+.-| +.|+.++.++++.+ +|++.+=|.-. |+.....+ .... +++
T Consensus 91 FivsP~~~---~~v~~~~~----~~~i~~iPG--~~T~~E~~~A~~~G-ad~vklFPa~~~G~~~ik~l---~~~~p~ip 157 (213)
T PRK06552 91 FIVSPSFN---RETAKICN----LYQIPYLPG--CMTVTEIVTALEAG-SEIVKLFPGSTLGPSFIKAI---KGPLPQVN 157 (213)
T ss_pred EEECCCCC---HHHHHHHH----HcCCCEECC--cCCHHHHHHHHHcC-CCEEEECCcccCCHHHHHHH---hhhCCCCE
Confidence 66667653 44555554 578999885 66889998888765 89999976443 64443333 2233 488
Q ss_pred EEEcccC
Q 014285 357 LMIDGMI 363 (427)
Q Consensus 357 ~~~~s~~ 363 (427)
+++.+-+
T Consensus 158 ~~atGGI 164 (213)
T PRK06552 158 VMVTGGV 164 (213)
T ss_pred EEEECCC
Confidence 8887644
|
|
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=92.62 E-value=2 Score=45.81 Aligned_cols=159 Identities=14% Similarity=0.145 Sum_probs=100.9
Q ss_pred eeeeeeecCCCHHH-------HHHHHHHHhhcCCcEEEEeccC--Cc--------hhhHHHHHHHHHhC-CC-cEEEEeC
Q 014285 194 LSTAITIPAVSPAE-------ASELASKYCKLGFSTLKLNVGR--NI--------TADFDVLQAIHAVH-PH-CSFILDA 254 (427)
Q Consensus 194 ip~~~~i~~~~~~~-------~~~~~~~~~~~Gf~~iKlKiG~--~~--------~~d~~~l~~ir~~~-~~-~~L~vDA 254 (427)
+|+-...++.+.++ ..+.++++.+.|...+-+--.. ++ ..+-+.++.+-+.+ .+ +.+.||+
T Consensus 315 ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~ 394 (538)
T PLN02617 315 VPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSIDP 394 (538)
T ss_pred CCEEEcCCccccccccccccchHHHHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEec
Confidence 55555555556543 3577888888887655443211 22 12457888888864 56 8999998
Q ss_pred CCCC-------------------------------------CHHHHHHHHHHhhhCCCCCceEeCCCCCC------Chhh
Q 014285 255 NEGY-------------------------------------TSEEAVEVLGKLNDMGVIPVLFEQPVHRD------DWSG 291 (427)
Q Consensus 255 N~~~-------------------------------------s~~~A~~~l~~L~~~~l~~~~iEqP~~~~------d~~~ 291 (427)
...+ +.-++.++++++++++.. +.+=-=+..| |++.
T Consensus 395 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gag-eil~t~id~DGt~~G~d~~l 473 (538)
T PLN02617 395 RRVYVKDPSDVPFKTVKVTNPGPNGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAG-EILLNCIDCDGQGKGFDIEL 473 (538)
T ss_pred CcCcccCccccccccccccccCcCcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCC-EEEEeeccccccccCcCHHH
Confidence 6432 233578899999988764 3444444433 5667
Q ss_pred HHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCc-cHHHHHHHHHHHHHcCCcE
Q 014285 292 LHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHL 357 (427)
Q Consensus 292 ~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~-Gi~~~~~~~~~A~~~gi~~ 357 (427)
++++++ .+.+||.+-=-.-++.++.+++....++....--..+ +-....++-+..++.|+++
T Consensus 474 ~~~v~~----~~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k~~l~~~gi~v 536 (538)
T PLN02617 474 VKLVSD----AVTIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRKEVPISSVKEHLLEEGIET 536 (538)
T ss_pred HHHHHh----hCCCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccCCCCHHHHHHHHHHCCCcc
Confidence 777775 6899998877888999999999865555544322222 3223344555666777765
|
|
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=92.13 E-value=18 Score=38.28 Aligned_cols=165 Identities=10% Similarity=0.117 Sum_probs=105.1
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCCc--------hhhHHHHHHHHHhCCCcEEEEeCCCC----CC--HHHH-HHHHH
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRNI--------TADFDVLQAIHAVHPHCSFILDANEG----YT--SEEA-VEVLG 268 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~~--------~~d~~~l~~ir~~~~~~~L~vDAN~~----~s--~~~A-~~~l~ 268 (427)
+.+++...++.+-+.||..+-+--|..+ +.+.++|+++|+..++..|..=..|. |. +++. ..+++
T Consensus 25 ~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~ 104 (499)
T PRK12330 25 AMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFVE 104 (499)
T ss_pred CHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHHHH
Confidence 6788888899998899999999756433 46899999999988877776444322 32 3333 45777
Q ss_pred HhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCC---eEEe-cCCCCCHHHH----HHHHHcCCCcEEEeCCCC-cc
Q 014285 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGI---SVVA-DESCRSLNDV----QKVMQENLASVVNIKLAK-FG 339 (427)
Q Consensus 269 ~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~i---PIa~-dE~~~~~~~~----~~ll~~~a~~~i~lk~~~-~G 339 (427)
...+.++.+.-|=.|+. |.+.+....+.+++.-.. -|+- .-..++.+.+ +++.+.+ ++.|.++=+- +.
T Consensus 105 ~a~~~Gidi~RIfd~ln--dv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~G-ad~I~IkDtaGll 181 (499)
T PRK12330 105 KSAENGMDVFRVFDALN--DPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMG-ADSICIKDMAALL 181 (499)
T ss_pred HHHHcCCCEEEEEecCC--hHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcC-CCEEEeCCCccCC
Confidence 77777877667888886 455555444333322221 2211 1134566554 4455554 7888886554 23
Q ss_pred -HHHHHHHHHHHHHc---CCcEEEcccCchhHHHHH
Q 014285 340 -VLGTLQIIKATRKS---GLHLMIDGMIETRLATGF 371 (427)
Q Consensus 340 -i~~~~~~~~~A~~~---gi~~~~~s~~es~ig~~a 371 (427)
...+.+++...++. ++++.+|+-...|++.+.
T Consensus 182 ~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An 217 (499)
T PRK12330 182 KPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVS 217 (499)
T ss_pred CHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHH
Confidence 45566776666554 699999987666665554
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=92.05 E-value=3.1 Score=40.08 Aligned_cols=129 Identities=14% Similarity=0.170 Sum_probs=82.2
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCC--CcEEEEeCCCC-----------C--
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHP--HCSFILDANEG-----------Y-- 258 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~--~~~L~vDAN~~-----------~-- 258 (427)
+|+....++.+.+++ +++.+.|+..+ -+|...-++.+.++.+.+.++ .+.+.+|+..+ |
T Consensus 75 ~pv~~gGGi~s~~d~----~~l~~~G~~~v--vigs~~~~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~ 148 (258)
T PRK01033 75 MPLCYGGGIKTLEQA----KKIFSLGVEKV--SINTAALEDPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTK 148 (258)
T ss_pred CCEEECCCCCCHHHH----HHHHHCCCCEE--EEChHHhcCHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCee
Confidence 344344455566553 34456687754 455434456677888877653 47888997543 2
Q ss_pred -CHHHHHHHHHHhhhCCCCCceE------eCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEE
Q 014285 259 -TSEEAVEVLGKLNDMGVIPVLF------EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVV 331 (427)
Q Consensus 259 -s~~~A~~~l~~L~~~~l~~~~i------EqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i 331 (427)
+.....++++.++++++. ..+ ++...--|++.++++++ .+++||.+.=-+.+..|+.++++...++.+
T Consensus 149 ~~~~~~~e~~~~~~~~g~~-~ii~~~i~~~G~~~G~d~~~i~~~~~----~~~ipvIasGGv~s~eD~~~l~~~~GvdgV 223 (258)
T PRK01033 149 KLKKDPLELAKEYEALGAG-EILLNSIDRDGTMKGYDLELLKSFRN----ALKIPLIALGGAGSLDDIVEAILNLGADAA 223 (258)
T ss_pred cCCCCHHHHHHHHHHcCCC-EEEEEccCCCCCcCCCCHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHHHHHCCCCEE
Confidence 122345666777666543 222 34444447888888875 588999888889999999999954456665
Q ss_pred Ee
Q 014285 332 NI 333 (427)
Q Consensus 332 ~l 333 (427)
.+
T Consensus 224 iv 225 (258)
T PRK01033 224 AA 225 (258)
T ss_pred EE
Confidence 54
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=92.03 E-value=4.4 Score=38.41 Aligned_cols=147 Identities=15% Similarity=0.165 Sum_probs=92.4
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCC--CcEEEEeCCC-----------CC--
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHP--HCSFILDANE-----------GY-- 258 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~--~~~L~vDAN~-----------~~-- 258 (427)
+|+....++.+.+++.+ +.+.|...+ -+|...-++.+.+..+.+.++ .+.+.+|+.. +|
T Consensus 72 ~pv~~~GGI~s~~d~~~----~l~~G~~~v--~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~ 145 (243)
T cd04731 72 IPLTVGGGIRSLEDARR----LLRAGADKV--SINSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRK 145 (243)
T ss_pred CCEEEeCCCCCHHHHHH----HHHcCCceE--EECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCce
Confidence 56666677778776644 344676654 456544556677777766543 4888999751 23
Q ss_pred -CHHHHHHHHHHhhhCCCCCce---EeC--CCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEE
Q 014285 259 -TSEEAVEVLGKLNDMGVIPVL---FEQ--PVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVN 332 (427)
Q Consensus 259 -s~~~A~~~l~~L~~~~l~~~~---iEq--P~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~ 332 (427)
+..++.++++.+.+.++.-.- +.. ....-+++.++++++ .+++||.+.=.+.+..++.++++...++.+.
T Consensus 146 ~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~----~~~~pvia~GGi~~~~di~~~l~~~g~dgv~ 221 (243)
T cd04731 146 PTGLDAVEWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSS----AVNIPVIASGGAGKPEHFVEAFEEGGADAAL 221 (243)
T ss_pred ecCCCHHHHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHHHHhCCCCEEE
Confidence 345567888888877654111 111 122235777777765 5789998888888999999999876687777
Q ss_pred eCCCCc-c-HHHHHHHHHHHH
Q 014285 333 IKLAKF-G-VLGTLQIIKATR 351 (427)
Q Consensus 333 lk~~~~-G-i~~~~~~~~~A~ 351 (427)
+--... | ++ ..++.+.++
T Consensus 222 vg~al~~~~~~-~~~~~~~~~ 241 (243)
T cd04731 222 AASIFHFGEYT-IAELKEYLA 241 (243)
T ss_pred EeHHHHcCCCC-HHHHHHHHh
Confidence 644333 5 42 344444444
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.74 E-value=8 Score=38.03 Aligned_cols=110 Identities=14% Similarity=0.119 Sum_probs=79.5
Q ss_pred ceeeeeee--cCCCHHHHHHHHHHHhhcCCcEEEEec-------c-------CCchhhHHHHHHHHHh--CCCcEE--EE
Q 014285 193 SLSTAITI--PAVSPAEASELASKYCKLGFSTLKLNV-------G-------RNITADFDVLQAIHAV--HPHCSF--IL 252 (427)
Q Consensus 193 ~ip~~~~i--~~~~~~~~~~~~~~~~~~Gf~~iKlKi-------G-------~~~~~d~~~l~~ir~~--~~~~~L--~v 252 (427)
.+|+..-+ +.+++..+.+.++++.+.|-..+-|-= | .+.++-+++|+++++. .+++-| |-
T Consensus 78 ~iPviaD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART 157 (292)
T PRK11320 78 DLPLLVDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMART 157 (292)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEec
Confidence 45654432 445888888889999999988877732 2 1445667788888874 455444 67
Q ss_pred eCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEe
Q 014285 253 DANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA 309 (427)
Q Consensus 253 DAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~ 309 (427)
|+-.....++|++.+++..+.|-...|+|-|- +.+.++++++ ..+.|+..
T Consensus 158 Da~~~~g~deAI~Ra~aY~eAGAD~ifi~~~~---~~~~i~~~~~----~~~~Pl~~ 207 (292)
T PRK11320 158 DALAVEGLDAAIERAQAYVEAGADMIFPEAMT---ELEMYRRFAD----AVKVPILA 207 (292)
T ss_pred CcccccCHHHHHHHHHHHHHcCCCEEEecCCC---CHHHHHHHHH----hcCCCEEE
Confidence 88766679999999999998876667998764 4777888886 45677744
|
|
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=91.68 E-value=11 Score=34.97 Aligned_cols=142 Identities=14% Similarity=0.192 Sum_probs=103.6
Q ss_pred ecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCce
Q 014285 200 IPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVL 279 (427)
Q Consensus 200 i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~ 279 (427)
+...++++..+.++.+.+.|++++-+-... ..-.+.++.+++.+|+ +.|=|-.-.|++++.+.++ .|-+ |
T Consensus 14 lr~~~~e~a~~~~~al~~~Gi~~iEit~~t--~~a~~~i~~l~~~~~~--~~vGAGTVl~~~~a~~a~~----aGA~--F 83 (204)
T TIGR01182 14 IRIDDVDDALPLAKALIEGGLRVLEVTLRT--PVALDAIRLLRKEVPD--ALIGAGTVLNPEQLRQAVD----AGAQ--F 83 (204)
T ss_pred EecCCHHHHHHHHHHHHHcCCCEEEEeCCC--ccHHHHHHHHHHHCCC--CEEEEEeCCCHHHHHHHHH----cCCC--E
Confidence 344688999999999999999999998853 4556788899988885 7788888899998776655 3432 6
Q ss_pred EeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCC-cc-HHHHHHHHHHHHHcCCcE
Q 014285 280 FEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK-FG-VLGTLQIIKATRKSGLHL 357 (427)
Q Consensus 280 iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~-~G-i~~~~~~~~~A~~~gi~~ 357 (427)
|=-|.- -.+..+.|+ +.++|..-| +.|+.++..+++.+ ++++-+=|.- .| ..-...+..-- -++++
T Consensus 84 ivsP~~---~~~v~~~~~----~~~i~~iPG--~~TptEi~~A~~~G-a~~vKlFPA~~~GG~~yikal~~pl--p~i~~ 151 (204)
T TIGR01182 84 IVSPGL---TPELAKHAQ----DHGIPIIPG--VATPSEIMLALELG-ITALKLFPAEVSGGVKMLKALAGPF--PQVRF 151 (204)
T ss_pred EECCCC---CHHHHHHHH----HcCCcEECC--CCCHHHHHHHHHCC-CCEEEECCchhcCCHHHHHHHhccC--CCCcE
Confidence 756654 245555564 578888884 77999999999886 6888888865 45 44433333322 48999
Q ss_pred EEcccC
Q 014285 358 MIDGMI 363 (427)
Q Consensus 358 ~~~s~~ 363 (427)
++++-.
T Consensus 152 ~ptGGV 157 (204)
T TIGR01182 152 CPTGGI 157 (204)
T ss_pred EecCCC
Confidence 988744
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=91.37 E-value=11 Score=35.98 Aligned_cols=157 Identities=18% Similarity=0.199 Sum_probs=90.1
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCCc------hhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCC
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRNI------TADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIP 277 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~~------~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~ 277 (427)
+.++..+.++.+.+.|+..|-+-.+... +.+.+.++.+++.+++.++.+.+..+ .+.++.+.+.++.
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~------~~~i~~a~~~g~~- 89 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNR------EKGIERALEAGVD- 89 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCc------hhhHHHHHhCCcC-
Confidence 6788888888888899988887777655 67888999999988777776666443 3344444444443
Q ss_pred ceEeCCCCCC--------------ChhhHHHHHHhhccccCCeEEecC-CCC----CHHH---HHHHHHcCCCcEEEeCC
Q 014285 278 VLFEQPVHRD--------------DWSGLHDVSNFARDTYGISVVADE-SCR----SLND---VQKVMQENLASVVNIKL 335 (427)
Q Consensus 278 ~~iEqP~~~~--------------d~~~~~~L~~~~r~~~~iPIa~dE-~~~----~~~~---~~~ll~~~a~~~i~lk~ 335 (427)
++-=+++.. +++...+..+.++ +.++++...= ... +... +.+.+....++.|.+..
T Consensus 90 -~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~-~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~D 167 (265)
T cd03174 90 -EVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAK-EAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKD 167 (265)
T ss_pred -EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHH-HCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEech
Confidence 333333322 2333322222222 3566665543 223 3333 33333334588888765
Q ss_pred CCcc---HHHHHHHHHHHHH-cC-CcEEEcccCchhHHHH
Q 014285 336 AKFG---VLGTLQIIKATRK-SG-LHLMIDGMIETRLATG 370 (427)
Q Consensus 336 ~~~G---i~~~~~~~~~A~~-~g-i~~~~~s~~es~ig~~ 370 (427)
+. | .....++++..++ .+ +++-+|+-...+++.+
T Consensus 168 t~-G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~a 206 (265)
T cd03174 168 TV-GLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVA 206 (265)
T ss_pred hc-CCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHH
Confidence 53 5 3445666655444 34 7788887544444433
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=91.27 E-value=8.9 Score=37.57 Aligned_cols=109 Identities=10% Similarity=0.071 Sum_probs=78.8
Q ss_pred ceeeeeee--cCCCHHHHHHHHHHHhhcCCcEEEEec-------c-------CCchhhHHHHHHHHHh--CCCcEE--EE
Q 014285 193 SLSTAITI--PAVSPAEASELASKYCKLGFSTLKLNV-------G-------RNITADFDVLQAIHAV--HPHCSF--IL 252 (427)
Q Consensus 193 ~ip~~~~i--~~~~~~~~~~~~~~~~~~Gf~~iKlKi-------G-------~~~~~d~~~l~~ir~~--~~~~~L--~v 252 (427)
.+|+..-+ +.+++..+.+.++++.+.|-..+-|-= | .+.++=+++|+++++. .+++-| |-
T Consensus 73 ~iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART 152 (285)
T TIGR02317 73 DLPLLVDADTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIART 152 (285)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEc
Confidence 45654432 445788888889999999988877732 2 1445667788888884 345433 67
Q ss_pred eCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEE
Q 014285 253 DANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVV 308 (427)
Q Consensus 253 DAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa 308 (427)
|+-.....++|++.+++..+.|-...|+|-|- +.+.++++++ ..+.|+.
T Consensus 153 Da~~~~g~deAI~Ra~ay~~AGAD~vfi~g~~---~~e~i~~~~~----~i~~Pl~ 201 (285)
T TIGR02317 153 DARAVEGLDAAIERAKAYVEAGADMIFPEALT---SLEEFRQFAK----AVKVPLL 201 (285)
T ss_pred CcccccCHHHHHHHHHHHHHcCCCEEEeCCCC---CHHHHHHHHH----hcCCCEE
Confidence 99877789999999999998876667998765 4667788886 4567774
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=91.23 E-value=2.2 Score=39.58 Aligned_cols=96 Identities=13% Similarity=0.137 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHhhhCCCCCceEeCCCCCCCh-hhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCC
Q 014285 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW-SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK 337 (427)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~-~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~ 337 (427)
+++++.+.++.|.+-+++ .||=++...+. +.+++|++. .-.+-|-.+ ++.+.++++++++.+ .+++ +-|..
T Consensus 14 ~~~~a~~ia~al~~gGi~--~iEit~~tp~a~~~I~~l~~~---~~~~~vGAG-TVl~~e~a~~ai~aG-A~Fi-vSP~~ 85 (201)
T PRK06015 14 DVEHAVPLARALAAGGLP--AIEITLRTPAALDAIRAVAAE---VEEAIVGAG-TILNAKQFEDAAKAG-SRFI-VSPGT 85 (201)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCCccHHHHHHHHHHH---CCCCEEeeE-eCcCHHHHHHHHHcC-CCEE-ECCCC
Confidence 789999999999999986 89999986554 446666642 223445444 888999999999987 5543 34443
Q ss_pred ccHHHHHHHHHHHHHcCCcEEEcccCchhH
Q 014285 338 FGVLGTLQIIKATRKSGLHLMIDGMIETRL 367 (427)
Q Consensus 338 ~Gi~~~~~~~~~A~~~gi~~~~~s~~es~i 367 (427)
. .++++.|+++|++++++.+.-|-+
T Consensus 86 ~-----~~vi~~a~~~~i~~iPG~~TptEi 110 (201)
T PRK06015 86 T-----QELLAAANDSDVPLLPGAATPSEV 110 (201)
T ss_pred C-----HHHHHHHHHcCCCEeCCCCCHHHH
Confidence 2 588999999999999999875544
|
|
| >TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase | Back alignment and domain information |
|---|
Probab=90.96 E-value=12 Score=36.81 Aligned_cols=113 Identities=14% Similarity=0.082 Sum_probs=75.8
Q ss_pred ceeeeeee--cCCCHHHHHHHHHHHhhcCCcEEEEecc----------------CCchhhHHHHHHHHHh--CCCcEE--
Q 014285 193 SLSTAITI--PAVSPAEASELASKYCKLGFSTLKLNVG----------------RNITADFDVLQAIHAV--HPHCSF-- 250 (427)
Q Consensus 193 ~ip~~~~i--~~~~~~~~~~~~~~~~~~Gf~~iKlKiG----------------~~~~~d~~~l~~ir~~--~~~~~L-- 250 (427)
.+|+..-+ +.+++..+.+-++++.+.|-..+-|-=+ .+.++-.++|+++++. .+++-|
T Consensus 75 ~lPv~aD~d~GyG~~~~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~A 154 (290)
T TIGR02321 75 SIPLIADIDTGFGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIA 154 (290)
T ss_pred CCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 45654432 3345556777788898899887777322 1334446788888873 455444
Q ss_pred EEeCC-CCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEe
Q 014285 251 ILDAN-EGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA 309 (427)
Q Consensus 251 ~vDAN-~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~ 309 (427)
|-|+- .....++|++.+++..+.|-...|+|-|.. +.++++++++.+ ..++|+..
T Consensus 155 RTDa~~~~~g~deAI~Ra~aY~eAGAD~ifv~~~~~--~~~ei~~~~~~~--~~p~pv~~ 210 (290)
T TIGR02321 155 RVEALIAGLGQQEAVRRGQAYEEAGADAILIHSRQK--TPDEILAFVKSW--PGKVPLVL 210 (290)
T ss_pred EeccccccCCHHHHHHHHHHHHHcCCCEEEecCCCC--CHHHHHHHHHhc--CCCCCeEE
Confidence 67886 456789999999999998866568977643 567888888632 23467754
|
This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2. |
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=90.92 E-value=9.7 Score=37.48 Aligned_cols=151 Identities=12% Similarity=0.129 Sum_probs=93.1
Q ss_pred ceeeeeee--cCCCHHHHHHHHHHHhhcCCcEEEEec-------c----C---CchhhHHHHHHHHHh--CCCcE--EEE
Q 014285 193 SLSTAITI--PAVSPAEASELASKYCKLGFSTLKLNV-------G----R---NITADFDVLQAIHAV--HPHCS--FIL 252 (427)
Q Consensus 193 ~ip~~~~i--~~~~~~~~~~~~~~~~~~Gf~~iKlKi-------G----~---~~~~d~~~l~~ir~~--~~~~~--L~v 252 (427)
.+|+..-+ +.+++.++.+.++++.+.|...+-|-= | . +.++-.++|+++++. .+++- -|-
T Consensus 77 ~lPv~aD~dtGyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ART 156 (294)
T TIGR02319 77 DVPVIMDADAGYGNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIART 156 (294)
T ss_pred CCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence 45654432 344555677778889889988877732 2 1 345557788888874 34543 478
Q ss_pred eCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEe--cC----CCCCHHHHHHHHHcC
Q 014285 253 DANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA--DE----SCRSLNDVQKVMQEN 326 (427)
Q Consensus 253 DAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~--dE----~~~~~~~~~~ll~~~ 326 (427)
|+......++|++.+++..+.|-...|+|-|. +.++++++++ ..+.|+.. -+ ...+. +++-+.
T Consensus 157 Da~~~~g~deaI~Ra~aY~eAGAD~ifi~~~~---~~~ei~~~~~----~~~~P~~~nv~~~~~~p~~s~---~eL~~l- 225 (294)
T TIGR02319 157 DARESFGLDEAIRRSREYVAAGADCIFLEAML---DVEEMKRVRD----EIDAPLLANMVEGGKTPWLTT---KELESI- 225 (294)
T ss_pred cccccCCHHHHHHHHHHHHHhCCCEEEecCCC---CHHHHHHHHH----hcCCCeeEEEEecCCCCCCCH---HHHHHc-
Confidence 99877889999999999998876667998754 4677888886 45556522 11 12233 333333
Q ss_pred CCcEEEeCCCCcc--HHHHHHHHHHHHHcC
Q 014285 327 LASVVNIKLAKFG--VLGTLQIIKATRKSG 354 (427)
Q Consensus 327 a~~~i~lk~~~~G--i~~~~~~~~~A~~~g 354 (427)
.++.+..-++... .....+.++.-.+.|
T Consensus 226 G~~~v~~~~~~~~aa~~a~~~~~~~l~~~G 255 (294)
T TIGR02319 226 GYNLAIYPLSGWMAAASVLRKLFTELREAG 255 (294)
T ss_pred CCcEEEEcHHHHHHHHHHHHHHHHHHHHcC
Confidence 3666655554432 334444444444444
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.84 E-value=6.3 Score=37.49 Aligned_cols=141 Identities=15% Similarity=0.236 Sum_probs=93.5
Q ss_pred eeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhC-CCcEEEEeCCC------CCCH---HHHH
Q 014285 195 STAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH-PHCSFILDANE------GYTS---EEAV 264 (427)
Q Consensus 195 p~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~-~~~~L~vDAN~------~~s~---~~A~ 264 (427)
|+-...++.|.+. ++++++.|...+-+ |.-.-+|-++++.+.+.+ ..+-+.+|++. +|.. -++.
T Consensus 77 ~vQvGGGIRs~~~----v~~ll~~G~~rVii--Gt~av~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~ 150 (241)
T COG0106 77 PVQVGGGIRSLED----VEALLDAGVARVII--GTAAVKNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELE 150 (241)
T ss_pred CEEeeCCcCCHHH----HHHHHHCCCCEEEE--ecceecCHHHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHH
Confidence 3333445566544 55677889877554 322246778888888865 56899999986 4632 2456
Q ss_pred HHHHHhhhCCCCCceE------eCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHc-CCCcEEEeCCCC
Q 014285 265 EVLGKLNDMGVIPVLF------EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQE-NLASVVNIKLAK 337 (427)
Q Consensus 265 ~~l~~L~~~~l~~~~i------EqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~-~a~~~i~lk~~~ 337 (427)
++++++++.++. .+| |==+.--|++.+++|++ .+.+|+-.-=-+.+.+|++.+-+. +...+|+=+.-.
T Consensus 151 ~l~~~~~~~g~~-~ii~TdI~~DGtl~G~n~~l~~~l~~----~~~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy 225 (241)
T COG0106 151 ELAKRLEEVGLA-HILYTDISRDGTLSGPNVDLVKELAE----AVDIPVIASGGVSSLDDIKALKELSGVEGVIVGRALY 225 (241)
T ss_pred HHHHHHHhcCCC-eEEEEecccccccCCCCHHHHHHHHH----HhCcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHh
Confidence 677777777653 222 33444458889999997 679999887788999999988887 455555556555
Q ss_pred cc-H--HHHHHH
Q 014285 338 FG-V--LGTLQI 346 (427)
Q Consensus 338 ~G-i--~~~~~~ 346 (427)
.| + .++++.
T Consensus 226 ~g~~~l~ea~~~ 237 (241)
T COG0106 226 EGKFTLEEALAC 237 (241)
T ss_pred cCCCCHHHHHHH
Confidence 56 5 344443
|
|
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=90.45 E-value=14 Score=34.35 Aligned_cols=142 Identities=15% Similarity=0.180 Sum_probs=102.9
Q ss_pred ecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCce
Q 014285 200 IPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVL 279 (427)
Q Consensus 200 i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~ 279 (427)
+...++++..+.++.+.+.|++++-+-... ..-++.++.+++.+|+ +.|=|-.-.|.+++.+.++ .|-+ |
T Consensus 10 ir~~~~~~a~~ia~al~~gGi~~iEit~~t--p~a~~~I~~l~~~~~~--~~vGAGTVl~~e~a~~ai~----aGA~--F 79 (201)
T PRK06015 10 LLIDDVEHAVPLARALAAGGLPAIEITLRT--PAALDAIRAVAAEVEE--AIVGAGTILNAKQFEDAAK----AGSR--F 79 (201)
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEeCCC--ccHHHHHHHHHHHCCC--CEEeeEeCcCHHHHHHHHH----cCCC--E
Confidence 344688999999999999999999998853 3456778888887875 7788888899998766655 3443 6
Q ss_pred EeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCC-Ccc-HHHHHHHHHHHHHcCCcE
Q 014285 280 FEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLA-KFG-VLGTLQIIKATRKSGLHL 357 (427)
Q Consensus 280 iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~-~~G-i~~~~~~~~~A~~~gi~~ 357 (427)
|=-|.-. .++.+.|+ +.++|..-| +.|+.++..+++.+ ++++-+=|. .+| ..-...+..-- -++++
T Consensus 80 ivSP~~~---~~vi~~a~----~~~i~~iPG--~~TptEi~~A~~~G-a~~vK~FPa~~~GG~~yikal~~pl--p~~~l 147 (201)
T PRK06015 80 IVSPGTT---QELLAAAN----DSDVPLLPG--AATPSEVMALREEG-YTVLKFFPAEQAGGAAFLKALSSPL--AGTFF 147 (201)
T ss_pred EECCCCC---HHHHHHHH----HcCCCEeCC--CCCHHHHHHHHHCC-CCEEEECCchhhCCHHHHHHHHhhC--CCCcE
Confidence 7777653 34455554 578888876 67899999999986 688888885 454 44433332222 48999
Q ss_pred EEcccC
Q 014285 358 MIDGMI 363 (427)
Q Consensus 358 ~~~s~~ 363 (427)
++++-+
T Consensus 148 ~ptGGV 153 (201)
T PRK06015 148 CPTGGI 153 (201)
T ss_pred EecCCC
Confidence 998744
|
|
| >cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols | Back alignment and domain information |
|---|
Probab=90.25 E-value=12 Score=35.89 Aligned_cols=158 Identities=11% Similarity=0.113 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHH-HHHHHhC--CCcEEEEeC--C----CCCCHHHHHHHHH-HhhhC
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRNITADFDVL-QAIHAVH--PHCSFILDA--N----EGYTSEEAVEVLG-KLNDM 273 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l-~~ir~~~--~~~~L~vDA--N----~~~s~~~A~~~l~-~L~~~ 273 (427)
+.++..+.++...+.|++.|-.--.-......+.+ +++++.. .++.|.-=. . ..++.+...+.++ .|+.+
T Consensus 27 ~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L 106 (285)
T cd06660 27 DEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIATKVGPRPGDGRDLSPEHIRRAVEESLKRL 106 (285)
T ss_pred CHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEEeeecCCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 45667777888889999997543221111123333 4555543 233322111 1 1256666554443 24443
Q ss_pred C---CCCceEeCCCCC-----CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHc--CCCcEEEeCCCCccHHHH
Q 014285 274 G---VIPVLFEQPVHR-----DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQE--NLASVVNIKLAKFGVLGT 343 (427)
Q Consensus 274 ~---l~~~~iEqP~~~-----~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~--~a~~~i~lk~~~~Gi~~~ 343 (427)
+ +.+.++-.|-.. +-|+.|.++.+ .+.==+.|=+.++...+.++++. ..++++|+..+.+--...
T Consensus 107 ~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~-----~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~ 181 (285)
T cd06660 107 GTDYIDLYLLHWPDPDTPDIEETLRALEELVK-----EGKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAE 181 (285)
T ss_pred CCCceeEEEecCCCCCCCCHHHHHHHHHHHHH-----cCCccEEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCchH
Confidence 3 223455566443 23455555543 23223445567778888888887 789999998877631112
Q ss_pred HHHHHHHHHcCCcEEEcccCchh
Q 014285 344 LQIIKATRKSGLHLMIDGMIETR 366 (427)
Q Consensus 344 ~~~~~~A~~~gi~~~~~s~~es~ 366 (427)
..+.+.|+++||+++..+.+..+
T Consensus 182 ~~~~~~~~~~gi~v~~~~~l~~g 204 (285)
T cd06660 182 EELLPYCREHGIGVIAYSPLAGG 204 (285)
T ss_pred HHHHHHHHHcCcEEEEeccccCc
Confidence 27899999999999988876544
|
AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others. |
| >COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=90.10 E-value=2.6 Score=41.74 Aligned_cols=70 Identities=14% Similarity=0.178 Sum_probs=53.4
Q ss_pred hhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCc
Q 014285 289 WSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIE 364 (427)
Q Consensus 289 ~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~e 364 (427)
-+.+.++++ ++++|+.+|=+.. ..-+.+..+. +++-+.+.|..+| -....++++.|+++|+++-++-.+.
T Consensus 63 A~A~~~Ik~----~~~vPLVaDiHf~-~rla~~~~~~-g~~k~RINPGNig~~~~v~~vVe~Ak~~g~piRIGVN~G 133 (361)
T COG0821 63 AEALKEIKQ----RLNVPLVADIHFD-YRLALEAAEC-GVDKVRINPGNIGFKDRVREVVEAAKDKGIPIRIGVNAG 133 (361)
T ss_pred HHHHHHHHH----hCCCCEEEEeecc-HHHHHHhhhc-CcceEEECCcccCcHHHHHHHHHHHHHcCCCEEEecccC
Confidence 345566654 7899999997765 3333444444 4899999999999 6779999999999999998876543
|
|
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=89.78 E-value=3 Score=39.00 Aligned_cols=99 Identities=11% Similarity=0.049 Sum_probs=73.0
Q ss_pred CHHHHHHHHHHhhhCCCCCceEeCCCCCCC-hhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCC
Q 014285 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDD-WSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK 337 (427)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d-~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~ 337 (427)
+.++|++.++.|.+-|++ .+|=++...+ .+.+++|++.....-++-|..| .+.+.++++++++.+ .++++ -|+.
T Consensus 23 ~~~~a~~~~~al~~~Gi~--~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaG-TV~~~~~~~~a~~aG-A~Fiv-sP~~ 97 (213)
T PRK06552 23 SKEEALKISLAVIKGGIK--AIEVTYTNPFASEVIKELVELYKDDPEVLIGAG-TVLDAVTARLAILAG-AQFIV-SPSF 97 (213)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEECCCccHHHHHHHHHHHcCCCCCeEEeee-eCCCHHHHHHHHHcC-CCEEE-CCCC
Confidence 789999999999999986 8999998655 3456777652100012445444 889999999999987 55544 4444
Q ss_pred ccHHHHHHHHHHHHHcCCcEEEcccCchhH
Q 014285 338 FGVLGTLQIIKATRKSGLHLMIDGMIETRL 367 (427)
Q Consensus 338 ~Gi~~~~~~~~~A~~~gi~~~~~s~~es~i 367 (427)
. .++++.|+++|++++++++..+-+
T Consensus 98 ~-----~~v~~~~~~~~i~~iPG~~T~~E~ 122 (213)
T PRK06552 98 N-----RETAKICNLYQIPYLPGCMTVTEI 122 (213)
T ss_pred C-----HHHHHHHHHcCCCEECCcCCHHHH
Confidence 3 578889999999999999765543
|
|
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=89.59 E-value=12 Score=36.77 Aligned_cols=105 Identities=12% Similarity=0.109 Sum_probs=72.0
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEE------e----cc-------CCchhhHHHHHHHHHh--CCCcEE--EEeCC-CCCCH
Q 014285 203 VSPAEASELASKYCKLGFSTLKL------N----VG-------RNITADFDVLQAIHAV--HPHCSF--ILDAN-EGYTS 260 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKl------K----iG-------~~~~~d~~~l~~ir~~--~~~~~L--~vDAN-~~~s~ 260 (427)
.++..+.+.++++.+.|...+-+ | .| .+.++=.++|+++++. .+++.| |-|+- .....
T Consensus 89 g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~ 168 (285)
T TIGR02320 89 GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGM 168 (285)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCH
Confidence 58888888899999999988888 1 11 1345557778888774 455444 67774 35679
Q ss_pred HHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccc-cCCeEEe
Q 014285 261 EEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDT-YGISVVA 309 (427)
Q Consensus 261 ~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~-~~iPIa~ 309 (427)
++|++.+++..+.|-...|+|-+. .+.++++++++.++.. -++|+..
T Consensus 169 ~eAi~Ra~ay~eAGAD~ifv~~~~--~~~~ei~~~~~~~~~~~p~~pl~~ 216 (285)
T TIGR02320 169 EDALKRAEAYAEAGADGIMIHSRK--KDPDEILEFARRFRNHYPRTPLVI 216 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCC--CCHHHHHHHHHHhhhhCCCCCEEE
Confidence 999999999999886666888432 2567777877633210 1457654
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.53 E-value=3.3 Score=38.57 Aligned_cols=94 Identities=12% Similarity=0.092 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHhhhCCCCCceEeCCCCCCCh-hhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCC
Q 014285 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW-SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK 337 (427)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~-~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~ 337 (427)
++++|+...++|-+-|++ -||=|+...++ +..+++++. .-..-|.+| .+.+..+++++++.++ + +++-|+.
T Consensus 23 ~~e~a~~~a~Ali~gGi~--~IEITl~sp~a~e~I~~l~~~---~p~~lIGAG-TVL~~~q~~~a~~aGa-~-fiVsP~~ 94 (211)
T COG0800 23 DVEEALPLAKALIEGGIP--AIEITLRTPAALEAIRALAKE---FPEALIGAG-TVLNPEQARQAIAAGA-Q-FIVSPGL 94 (211)
T ss_pred CHHHHHHHHHHHHHcCCC--eEEEecCCCCHHHHHHHHHHh---CcccEEccc-cccCHHHHHHHHHcCC-C-EEECCCC
Confidence 689999999999999986 89999987664 456777752 223445444 7889999999999874 4 3444544
Q ss_pred ccHHHHHHHHHHHHHcCCcEEEcccCch
Q 014285 338 FGVLGTLQIIKATRKSGLHLMIDGMIET 365 (427)
Q Consensus 338 ~Gi~~~~~~~~~A~~~gi~~~~~s~~es 365 (427)
. .++++.|..+|++++++++.-|
T Consensus 95 ~-----~ev~~~a~~~~ip~~PG~~Tpt 117 (211)
T COG0800 95 N-----PEVAKAANRYGIPYIPGVATPT 117 (211)
T ss_pred C-----HHHHHHHHhCCCcccCCCCCHH
Confidence 2 5889999999999999997644
|
|
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=89.34 E-value=9 Score=35.88 Aligned_cols=130 Identities=15% Similarity=0.238 Sum_probs=80.5
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCC-CcEEEEeCC------CCC---CHHHH
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHP-HCSFILDAN------EGY---TSEEA 263 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~-~~~L~vDAN------~~~---s~~~A 263 (427)
+|+....++.+.+++. ++.+.|... +=+|...-++.+.++.+.+.++ .+.+.+|.. .+| +....
T Consensus 75 ~pv~~~GGI~~~ed~~----~~~~~Ga~~--vilg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~ 148 (233)
T PRK00748 75 IPVQVGGGIRSLETVE----ALLDAGVSR--VIIGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTA 148 (233)
T ss_pred CCEEEcCCcCCHHHHH----HHHHcCCCE--EEECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCH
Confidence 4544555666766653 445567553 4466544445556666666544 478888973 233 11223
Q ss_pred HHHHHHhhhCCCCCceE------eCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeC
Q 014285 264 VEVLGKLNDMGVIPVLF------EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (427)
Q Consensus 264 ~~~l~~L~~~~l~~~~i------EqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk 334 (427)
.++++.+++.+.. ..+ ++....-|++.++++++ .+++||...=-+.+..|++++++.+.++.+.+=
T Consensus 149 ~e~~~~~~~~g~~-~ii~~~~~~~g~~~G~d~~~i~~l~~----~~~ipvia~GGi~~~~di~~~~~~g~~~gv~vg 220 (233)
T PRK00748 149 EDLAKRFEDAGVK-AIIYTDISRDGTLSGPNVEATRELAA----AVPIPVIASGGVSSLDDIKALKGLGAVEGVIVG 220 (233)
T ss_pred HHHHHHHHhcCCC-EEEEeeecCcCCcCCCCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcCCccEEEEE
Confidence 4556666665432 112 22333346888888875 578999888889999999999998767776653
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=88.99 E-value=8.8 Score=36.48 Aligned_cols=133 Identities=18% Similarity=0.193 Sum_probs=85.3
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhC-CCcEEEEeCCC------CCC--HHHHH
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH-PHCSFILDANE------GYT--SEEAV 264 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~-~~~~L~vDAN~------~~s--~~~A~ 264 (427)
+|+....++.+.+++ +++.+.|.. |+-+|...-+|.+.++.+-+.+ ..+.+.+|... +|. ..+..
T Consensus 76 ~pv~vgGGirs~edv----~~~l~~Ga~--kvviGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~ 149 (241)
T PRK14024 76 VKVELSGGIRDDESL----EAALATGCA--RVNIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLW 149 (241)
T ss_pred CCEEEcCCCCCHHHH----HHHHHCCCC--EEEECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHH
Confidence 344444566676654 455677876 4455654456777777776654 45667778732 453 33456
Q ss_pred HHHHHhhhCCCC-----CceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHc--CCCcEEEeCCC
Q 014285 265 EVLGKLNDMGVI-----PVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQE--NLASVVNIKLA 336 (427)
Q Consensus 265 ~~l~~L~~~~l~-----~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~--~a~~~i~lk~~ 336 (427)
++++.+++.++. ..--++-...-||+.++++++ .+++||...=.+.+..|+.++.+. ..++.+.+--.
T Consensus 150 ~~~~~l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~----~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra 224 (241)
T PRK14024 150 EVLERLDSAGCSRYVVTDVTKDGTLTGPNLELLREVCA----RTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKA 224 (241)
T ss_pred HHHHHHHhcCCCEEEEEeecCCCCccCCCHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHH
Confidence 778888877653 111244444457888899886 578999888889999999888642 35776666433
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=88.83 E-value=9.8 Score=35.72 Aligned_cols=130 Identities=19% Similarity=0.219 Sum_probs=81.1
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCC-C-cEEEEeCCCC------------C-
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHP-H-CSFILDANEG------------Y- 258 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~-~-~~L~vDAN~~------------~- 258 (427)
+|+....+..+.+++.+ +.+.|+..+ -+|...-++.+.++.+.+.++ + +.+.+|+... |
T Consensus 75 ~pv~~~ggi~~~~d~~~----~~~~G~~~v--ilg~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~ 148 (232)
T TIGR03572 75 MPLTVGGGIRSLEDAKK----LLSLGADKV--SINTAALENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGR 148 (232)
T ss_pred CCEEEECCCCCHHHHHH----HHHcCCCEE--EEChhHhcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCc
Confidence 34444555666665543 445687754 445444456678888877643 3 6678886542 2
Q ss_pred --CHHHHHHHHHHhhhCCCCCceE-----eCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEE
Q 014285 259 --TSEEAVEVLGKLNDMGVIPVLF-----EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVV 331 (427)
Q Consensus 259 --s~~~A~~~l~~L~~~~l~~~~i-----EqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i 331 (427)
+..++.++++.+++.++.-.-+ +.-...-+++.++++++ .+++||.+.=-+.+..++.+.+....++.+
T Consensus 149 ~~~~~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~----~~~ipvia~GGi~s~~di~~~l~~~gadgV 224 (232)
T TIGR03572 149 RATGRDPVEWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSD----AVSIPVIALGGAGSLDDLVEVALEAGASAV 224 (232)
T ss_pred ccCCCCHHHHHHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHh----hCCCCEEEECCCCCHHHHHHHHHHcCCCEE
Confidence 2345677888888776541111 11122235777888875 578999888888899999985555567776
Q ss_pred Ee
Q 014285 332 NI 333 (427)
Q Consensus 332 ~l 333 (427)
.+
T Consensus 225 ~v 226 (232)
T TIGR03572 225 AA 226 (232)
T ss_pred EE
Confidence 54
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >PLN02411 12-oxophytodienoate reductase | Back alignment and domain information |
|---|
Probab=88.58 E-value=8.6 Score=39.45 Aligned_cols=122 Identities=13% Similarity=0.167 Sum_probs=69.1
Q ss_pred HHHHHHHhhcCCcEEEEeccC------------Cchh-------------hHHHHHHHHH-hCCC-cEEEEeC----C--
Q 014285 209 SELASKYCKLGFSTLKLNVGR------------NITA-------------DFDVLQAIHA-VHPH-CSFILDA----N-- 255 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG~------------~~~~-------------d~~~l~~ir~-~~~~-~~L~vDA----N-- 255 (427)
.+.|+..+++||..|-|+.+. +-.. =++.|++||+ ++++ +-+|+-+ +
T Consensus 168 ~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~ 247 (391)
T PLN02411 168 RQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHLDA 247 (391)
T ss_pred HHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccccCC
Confidence 344666778999999999752 1111 2577899998 4665 4455543 1
Q ss_pred -CCCCHHHHHHHHHHhhhC------CCCCceEeC--C--------C--CCCChhhHHHHHHhhccccCCeEEecCCCCCH
Q 014285 256 -EGYTSEEAVEVLGKLNDM------GVIPVLFEQ--P--------V--HRDDWSGLHDVSNFARDTYGISVVADESCRSL 316 (427)
Q Consensus 256 -~~~s~~~A~~~l~~L~~~------~l~~~~iEq--P--------~--~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~ 316 (427)
..-+.++++.+.+.|+.. ++ .+|+= + . .......+..+++.+++..++||..-=.+ +.
T Consensus 248 ~~~~~~~~~~~~~~~l~~~~~~~g~~v--d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v~~pvi~~G~i-~~ 324 (391)
T PLN02411 248 TDSDPLNLGLAVVERLNKLQLQNGSKL--AYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAYQGTFMCSGGF-TR 324 (391)
T ss_pred CCCcchhhHHHHHHHHHHHHhhcCCCe--EEEEecCCcccccCCCcccccCCccchhHHHHHHHHHcCCCEEEECCC-CH
Confidence 122356677777776642 12 13321 1 0 00000011123233334567888766665 56
Q ss_pred HHHHHHHHcCCCcEEEe
Q 014285 317 NDVQKVMQENLASVVNI 333 (427)
Q Consensus 317 ~~~~~ll~~~a~~~i~l 333 (427)
....++++.+.+|.|-+
T Consensus 325 ~~a~~~l~~g~aDlV~~ 341 (391)
T PLN02411 325 ELGMQAVQQGDADLVSY 341 (391)
T ss_pred HHHHHHHHcCCCCEEEE
Confidence 77888998888887654
|
|
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=88.47 E-value=2.8 Score=38.69 Aligned_cols=97 Identities=13% Similarity=0.154 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHhhhCCCCCceEeCCCCCCCh-hhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCC
Q 014285 258 YTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW-SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLA 336 (427)
Q Consensus 258 ~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~-~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~ 336 (427)
-+.++|.+.+++|.+-+++ .+|=++...+. +.++++++. .-.+-|-.+ ++.+.++++++++.++ ++++ -|.
T Consensus 17 ~~~~~a~~~~~al~~gGi~--~iEiT~~t~~a~~~I~~l~~~---~p~~~vGAG-TV~~~e~a~~a~~aGA-~Fiv-SP~ 88 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIR--AIEITLRTPNALEAIEALRKE---FPDLLVGAG-TVLTAEQAEAAIAAGA-QFIV-SPG 88 (196)
T ss_dssp SSGGGHHHHHHHHHHTT----EEEEETTSTTHHHHHHHHHHH---HTTSEEEEE-S--SHHHHHHHHHHT--SEEE-ESS
T ss_pred CCHHHHHHHHHHHHHCCCC--EEEEecCCccHHHHHHHHHHH---CCCCeeEEE-eccCHHHHHHHHHcCC-CEEE-CCC
Confidence 3578999999999999986 89999986654 445556652 234556555 7899999999999874 4433 333
Q ss_pred CccHHHHHHHHHHHHHcCCcEEEcccCchhH
Q 014285 337 KFGVLGTLQIIKATRKSGLHLMIDGMIETRL 367 (427)
Q Consensus 337 ~~Gi~~~~~~~~~A~~~gi~~~~~s~~es~i 367 (427)
. ..++++.|+++|++++++.+.-|-+
T Consensus 89 ~-----~~~v~~~~~~~~i~~iPG~~TptEi 114 (196)
T PF01081_consen 89 F-----DPEVIEYAREYGIPYIPGVMTPTEI 114 (196)
T ss_dssp -------HHHHHHHHHHTSEEEEEESSHHHH
T ss_pred C-----CHHHHHHHHHcCCcccCCcCCHHHH
Confidence 2 3588999999999999999875544
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=88.30 E-value=9.7 Score=35.62 Aligned_cols=129 Identities=16% Similarity=0.268 Sum_probs=82.0
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhC-C-CcEEEEeCCCC------C---CHHH
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH-P-HCSFILDANEG------Y---TSEE 262 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~-~-~~~L~vDAN~~------~---s~~~ 262 (427)
+|+-...++.+++++ +++.+.|... +=+|...-.|.+.++.+.+.+ . .+.+.+|...+ | +..+
T Consensus 74 ~pv~~~GgI~~~e~~----~~~~~~Gad~--vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~ 147 (234)
T cd04732 74 IPVQVGGGIRSLEDI----ERLLDLGVSR--VIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVS 147 (234)
T ss_pred CCEEEeCCcCCHHHH----HHHHHcCCCE--EEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCC
Confidence 444444556676654 4455678554 446655456777888888764 3 57778886431 2 2234
Q ss_pred HHHHHHHhhhCCCCCceE------eCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeC
Q 014285 263 AVEVLGKLNDMGVIPVLF------EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (427)
Q Consensus 263 A~~~l~~L~~~~l~~~~i------EqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk 334 (427)
..++++.+++.+.. .++ ++.....+++.++++++ .+++||...=-+.+.++++++++. .++.+.+-
T Consensus 148 ~~~~~~~~~~~ga~-~iii~~~~~~g~~~g~~~~~i~~i~~----~~~ipvi~~GGi~~~~di~~~~~~-Ga~gv~vg 219 (234)
T cd04732 148 LEELAKRFEELGVK-AIIYTDISRDGTLSGPNFELYKELAA----ATGIPVIASGGVSSLDDIKALKEL-GVAGVIVG 219 (234)
T ss_pred HHHHHHHHHHcCCC-EEEEEeecCCCccCCCCHHHHHHHHH----hcCCCEEEecCCCCHHHHHHHHHC-CCCEEEEe
Confidence 45667777665543 222 22333346788888875 578999998899999999999886 46666653
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=88.26 E-value=6.1 Score=38.05 Aligned_cols=101 Identities=18% Similarity=0.077 Sum_probs=71.0
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCceEeC--------------CCCCCChhhHHHHHHhhccccCCeEE--ecCCCCCHHH
Q 014285 255 NEGYTSEEAVEVLGKLNDMGVIPVLFEQ--------------PVHRDDWSGLHDVSNFARDTYGISVV--ADESCRSLND 318 (427)
Q Consensus 255 N~~~s~~~A~~~l~~L~~~~l~~~~iEq--------------P~~~~d~~~~~~L~~~~r~~~~iPIa--~dE~~~~~~~ 318 (427)
|..|+.++.+++++.|.+.|++ +||= |...++++.++++.+. ..+..++ ..-......+
T Consensus 16 ~~~~~~~~k~~i~~~L~~~Gv~--~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~---~~~~~~~~~~~~~~~~~~~ 90 (263)
T cd07943 16 RHQFTLEQVRAIARALDAAGVP--LIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEA---LKQAKLGVLLLPGIGTVDD 90 (263)
T ss_pred CeecCHHHHHHHHHHHHHcCCC--EEEeecCCCCCCcccccCCCCCChHHHHHHHHHh---ccCCEEEEEecCCccCHHH
Confidence 3457899999999999999985 8987 5556677777777542 1234443 2333456778
Q ss_pred HHHHHHcCCCcEEEeCCCCccHHHHHHHHHHHHHcCCcEEEcc
Q 014285 319 VQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDG 361 (427)
Q Consensus 319 ~~~ll~~~a~~~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~~~s 361 (427)
++++++. .++.+.+-.+..=.....+.++.|+++|+.+.+.-
T Consensus 91 i~~a~~~-g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~ 132 (263)
T cd07943 91 LKMAADL-GVDVVRVATHCTEADVSEQHIGAARKLGMDVVGFL 132 (263)
T ss_pred HHHHHHc-CCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEE
Confidence 8888876 48888774433225677889999999999886543
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=88.26 E-value=13 Score=35.18 Aligned_cols=128 Identities=15% Similarity=0.168 Sum_probs=82.5
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhC-CCcEEEEeCCCC------CC---HHHH
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH-PHCSFILDANEG------YT---SEEA 263 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~-~~~~L~vDAN~~------~s---~~~A 263 (427)
+|+....++.+.+++ +++.+.|...+ =+|...-+|.+.++.+.+.+ .++-+.+|+... |. .-+.
T Consensus 77 ~pi~vGGGIrs~e~v----~~~l~~Ga~kv--vigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~ 150 (234)
T PRK13587 77 KDIEVGGGIRTKSQI----MDYFAAGINYC--IVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNL 150 (234)
T ss_pred CeEEEcCCcCCHHHH----HHHHHCCCCEE--EECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCH
Confidence 444444566676654 45667776654 45654456788899998876 468899998433 42 1223
Q ss_pred HHHHHHhhhCCCCCceEeCCCCC------CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEe
Q 014285 264 VEVLGKLNDMGVIPVLFEQPVHR------DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (427)
Q Consensus 264 ~~~l~~L~~~~l~~~~iEqP~~~------~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~l 333 (427)
.++++.+.++++. ..|=-.+.. -|++-+.++++ .+++||-..=-+.+.+|+.++++.+ ++.+.+
T Consensus 151 ~~~~~~~~~~g~~-~ii~tdi~~dGt~~G~~~~li~~l~~----~~~ipvi~~GGi~s~edi~~l~~~G-~~~viv 220 (234)
T PRK13587 151 FSFVRQLSDIPLG-GIIYTDIAKDGKMSGPNFELTGQLVK----ATTIPVIASGGIRHQQDIQRLASLN-VHAAII 220 (234)
T ss_pred HHHHHHHHHcCCC-EEEEecccCcCCCCccCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcC-CCEEEE
Confidence 5666777666643 233333332 25677777775 5788998888889999999998764 555444
|
|
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=88.14 E-value=19 Score=32.23 Aligned_cols=130 Identities=8% Similarity=0.064 Sum_probs=81.1
Q ss_pred ceeeeeeecCCC----HHHHHHHHHHHhhcCCcEEEEeccC----C--chhhHHHHHHHHHhC-CCcEEEEeCCCCC--C
Q 014285 193 SLSTAITIPAVS----PAEASELASKYCKLGFSTLKLNVGR----N--ITADFDVLQAIHAVH-PHCSFILDANEGY--T 259 (427)
Q Consensus 193 ~ip~~~~i~~~~----~~~~~~~~~~~~~~Gf~~iKlKiG~----~--~~~d~~~l~~ir~~~-~~~~L~vDAN~~~--s 259 (427)
++|+...++..+ .++..+.++.+.+.|...+.+-.-. + .+.-.+.++++++.. .++.+++..+-.+ +
T Consensus 48 ~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~ 127 (201)
T cd00945 48 DVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKT 127 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCC
Confidence 456555555555 7788888999999999999986432 1 233355666777653 5688888776443 5
Q ss_pred HHHHHHHHHHhhhCCCCCceEeCCCCC----CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcC
Q 014285 260 SEEAVEVLGKLNDMGVIPVLFEQPVHR----DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQEN 326 (427)
Q Consensus 260 ~~~A~~~l~~L~~~~l~~~~iEqP~~~----~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~ 326 (427)
+++..+..+.+.+.++. .|-..... .+++.++++.+.. ..++||..--...+...+.+.+..+
T Consensus 128 ~~~~~~~~~~~~~~g~~--~iK~~~~~~~~~~~~~~~~~i~~~~--~~~~~v~~~gg~~~~~~~~~~~~~G 194 (201)
T cd00945 128 ADEIAKAARIAAEAGAD--FIKTSTGFGGGGATVEDVKLMKEAV--GGRVGVKAAGGIKTLEDALAAIEAG 194 (201)
T ss_pred HHHHHHHHHHHHHhCCC--EEEeCCCCCCCCCCHHHHHHHHHhc--ccCCcEEEECCCCCHHHHHHHHHhc
Confidence 77666666666666764 67655432 2677777776521 1144553332233566677777765
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase | Back alignment and domain information |
|---|
Probab=88.11 E-value=4.7 Score=40.12 Aligned_cols=96 Identities=15% Similarity=0.165 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhhCCCCCceEeCCCCC-CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCc
Q 014285 260 SEEAVEVLGKLNDMGVIPVLFEQPVHR-DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF 338 (427)
Q Consensus 260 ~~~A~~~l~~L~~~~l~~~~iEqP~~~-~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~ 338 (427)
.+..++-+++|++.|-. .+==-++. ++-+.+.++++ .+++|+.+|=+..-. -....++ ..+|-+.+.|..+
T Consensus 33 v~atv~QI~~L~~aGce--iVRvavp~~~~A~al~~I~~----~~~iPlVADIHFd~~-lAl~a~~-~g~dkiRINPGNi 104 (346)
T TIGR00612 33 IDSTVAQIRALEEAGCD--IVRVTVPDRESAAAFEAIKE----GTNVPLVADIHFDYR-LAALAMA-KGVAKVRINPGNI 104 (346)
T ss_pred HHHHHHHHHHHHHcCCC--EEEEcCCCHHHHHhHHHHHh----CCCCCEEEeeCCCcH-HHHHHHH-hccCeEEECCCCC
Confidence 34445555556555543 22222221 12334455543 789999999665422 2233344 3589999999999
Q ss_pred c-HHHHHHHHHHHHHcCCcEEEcccC
Q 014285 339 G-VLGTLQIIKATRKSGLHLMIDGMI 363 (427)
Q Consensus 339 G-i~~~~~~~~~A~~~gi~~~~~s~~ 363 (427)
| -....++++.|+++|+++-++-..
T Consensus 105 g~~e~v~~vv~~ak~~~ipIRIGVN~ 130 (346)
T TIGR00612 105 GFRERVRDVVEKARDHGKAMRIGVNH 130 (346)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEecCC
Confidence 9 778999999999999999887543
|
Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins. |
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=88.03 E-value=21 Score=32.54 Aligned_cols=139 Identities=16% Similarity=0.213 Sum_probs=85.7
Q ss_pred cCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceE
Q 014285 201 PAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF 280 (427)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~i 280 (427)
...+++++.+.++.+.+.|++.+-+..-. ....+.++.+++.+|++.+- +-.-.+.+++...+ .+ +.. ++
T Consensus 11 r~~~~~~~~~~~~~l~~~G~~~vev~~~~--~~~~~~i~~l~~~~~~~~iG--ag~v~~~~~~~~a~-~~---Ga~--~i 80 (190)
T cd00452 11 RGDDAEDALALAEALIEGGIRAIEITLRT--PGALEAIRALRKEFPEALIG--AGTVLTPEQADAAI-AA---GAQ--FI 80 (190)
T ss_pred EcCCHHHHHHHHHHHHHCCCCEEEEeCCC--hhHHHHHHHHHHHCCCCEEE--EEeCCCHHHHHHHH-Hc---CCC--EE
Confidence 34578888899999999999999998754 23666888888888764433 33334455533222 22 221 33
Q ss_pred eCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCc-cHHHHHHHHHHHHHc-CCcEE
Q 014285 281 EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKS-GLHLM 358 (427)
Q Consensus 281 EqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~-Gi~~~~~~~~~A~~~-gi~~~ 358 (427)
==| ..+ ....+.++ ..++|+..| +.|..++.++++. .+|++.+.|... |..-...+ .... +++++
T Consensus 81 ~~p--~~~-~~~~~~~~----~~~~~~i~g--v~t~~e~~~A~~~-Gad~i~~~p~~~~g~~~~~~l---~~~~~~~p~~ 147 (190)
T cd00452 81 VSP--GLD-PEVVKAAN----RAGIPLLPG--VATPTEIMQALEL-GADIVKLFPAEAVGPAYIKAL---KGPFPQVRFM 147 (190)
T ss_pred EcC--CCC-HHHHHHHH----HcCCcEECC--cCCHHHHHHHHHC-CCCEEEEcCCcccCHHHHHHH---HhhCCCCeEE
Confidence 223 223 34444443 467888774 3488999888876 489999987543 43322222 2233 57887
Q ss_pred Eccc
Q 014285 359 IDGM 362 (427)
Q Consensus 359 ~~s~ 362 (427)
..+-
T Consensus 148 a~GG 151 (190)
T cd00452 148 PTGG 151 (190)
T ss_pred EeCC
Confidence 7653
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=87.74 E-value=5.9 Score=37.36 Aligned_cols=99 Identities=15% Similarity=0.095 Sum_probs=72.3
Q ss_pred CHHHHHHHHHHhhhCCCCCceEeCCCCCCC-hhhHHHHHHhhcccc-CCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCC
Q 014285 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDD-WSGLHDVSNFARDTY-GISVVADESCRSLNDVQKVMQENLASVVNIKLA 336 (427)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d-~~~~~~L~~~~r~~~-~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~ 336 (427)
++++|.+.++.|-+-|++ .+|=++...+ .+.+++|++..+++. .+-|-.+ ++.+.++++.+++.+ .+++ +-|.
T Consensus 25 ~~~~a~~~~~al~~gGi~--~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaG-TVl~~e~a~~a~~aG-A~Fi-VsP~ 99 (222)
T PRK07114 25 DVEVAKKVIKACYDGGAR--VFEFTNRGDFAHEVFAELVKYAAKELPGMILGVG-SIVDAATAALYIQLG-ANFI-VTPL 99 (222)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeE-eCcCHHHHHHHHHcC-CCEE-ECCC
Confidence 789999999999999986 8999997544 455666753221222 2444444 889999999999987 5544 3343
Q ss_pred CccHHHHHHHHHHHHHcCCcEEEcccCchhH
Q 014285 337 KFGVLGTLQIIKATRKSGLHLMIDGMIETRL 367 (427)
Q Consensus 337 ~~Gi~~~~~~~~~A~~~gi~~~~~s~~es~i 367 (427)
.. .++++.|+++|++++++.+.-|-+
T Consensus 100 ~~-----~~v~~~~~~~~i~~iPG~~TpsEi 125 (222)
T PRK07114 100 FN-----PDIAKVCNRRKVPYSPGCGSLSEI 125 (222)
T ss_pred CC-----HHHHHHHHHcCCCEeCCCCCHHHH
Confidence 32 578899999999999999875544
|
|
| >PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=87.67 E-value=5.7 Score=39.83 Aligned_cols=96 Identities=16% Similarity=0.211 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhhCCCCCceEeCCCCC-CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCc
Q 014285 260 SEEAVEVLGKLNDMGVIPVLFEQPVHR-DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF 338 (427)
Q Consensus 260 ~~~A~~~l~~L~~~~l~~~~iEqP~~~-~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~ 338 (427)
.+..++-+++|++.|-. .+==-++. ++-+.+.++++ ++++|+.+|=+. +..-....++. .+|-+.+.|..+
T Consensus 41 v~atv~Qi~~L~~aGce--iVRvav~~~~~a~al~~I~~----~~~iPlvADIHF-d~~lAl~a~~~-G~~~iRINPGNi 112 (360)
T PRK00366 41 VEATVAQIKRLARAGCE--IVRVAVPDMEAAAALPEIKK----QLPVPLVADIHF-DYRLALAAAEA-GADALRINPGNI 112 (360)
T ss_pred HHHHHHHHHHHHHcCCC--EEEEccCCHHHHHhHHHHHH----cCCCCEEEecCC-CHHHHHHHHHh-CCCEEEECCCCC
Confidence 34445555555555543 23222321 12344555654 789999999553 33333445554 489999999999
Q ss_pred c-HH-HHHHHHHHHHHcCCcEEEcccC
Q 014285 339 G-VL-GTLQIIKATRKSGLHLMIDGMI 363 (427)
Q Consensus 339 G-i~-~~~~~~~~A~~~gi~~~~~s~~ 363 (427)
| +. ...++++.|+++|+++-++...
T Consensus 113 g~~~~~v~~vv~~ak~~~ipIRIGvN~ 139 (360)
T PRK00366 113 GKRDERVREVVEAAKDYGIPIRIGVNA 139 (360)
T ss_pred CchHHHHHHHHHHHHHCCCCEEEecCC
Confidence 8 45 6889999999999999887543
|
|
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=87.54 E-value=41 Score=35.40 Aligned_cols=163 Identities=13% Similarity=0.201 Sum_probs=101.5
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCCc--------hhhHHHHHHHHHhCCCcEEEEeCCC----CCCH--HH-HHHHHH
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRNI--------TADFDVLQAIHAVHPHCSFILDANE----GYTS--EE-AVEVLG 268 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~~--------~~d~~~l~~ir~~~~~~~L~vDAN~----~~s~--~~-A~~~l~ 268 (427)
+.++|...++.+-+.||..+-+--|..+ +.+.++++++|+..|+..|..=..| +|.. ++ ...+++
T Consensus 33 ~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~ 112 (468)
T PRK12581 33 SIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFIS 112 (468)
T ss_pred CHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHHH
Confidence 5788888888888899999999866533 4789999999998776554322222 3442 34 445778
Q ss_pred HhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCe----E-EecCCCCCHHH----HHHHHHcCCCcEEEeCCCCcc
Q 014285 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGIS----V-VADESCRSLND----VQKVMQENLASVVNIKLAKFG 339 (427)
Q Consensus 269 ~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iP----I-a~dE~~~~~~~----~~~ll~~~a~~~i~lk~~~~G 339 (427)
...+.|+++..+=+.+. |.+.+....+.+++ .+.- | ..+...++.+- ++++.+. .++.|.++=+- |
T Consensus 113 ~a~~~Gidi~Rifd~ln--d~~n~~~ai~~ak~-~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~-Gad~I~IkDta-G 187 (468)
T PRK12581 113 LSAQNGIDVFRIFDALN--DPRNIQQALRAVKK-TGKEAQLCIAYTTSPVHTLNYYLSLVKELVEM-GADSICIKDMA-G 187 (468)
T ss_pred HHHHCCCCEEEEcccCC--CHHHHHHHHHHHHH-cCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHc-CCCEEEECCCC-C
Confidence 88888888767777775 45555544443332 2221 2 12223334333 2455555 47888886654 5
Q ss_pred ---HHHHHHHHHHHHH-cCCcEEEcccCchhHHHHH
Q 014285 340 ---VLGTLQIIKATRK-SGLHLMIDGMIETRLATGF 371 (427)
Q Consensus 340 ---i~~~~~~~~~A~~-~gi~~~~~s~~es~ig~~a 371 (427)
...+.+++...++ -++++.+|+-...|++.+.
T Consensus 188 ~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~An 223 (468)
T PRK12581 188 ILTPKAAKELVSGIKAMTNLPLIVHTHATSGISQMT 223 (468)
T ss_pred CcCHHHHHHHHHHHHhccCCeEEEEeCCCCccHHHH
Confidence 4456666655554 4688889886656555443
|
|
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=87.52 E-value=8.7 Score=36.25 Aligned_cols=129 Identities=17% Similarity=0.302 Sum_probs=79.2
Q ss_pred eeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhC-C-CcEEEEeCC------CCCCHH---HH
Q 014285 195 STAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH-P-HCSFILDAN------EGYTSE---EA 263 (427)
Q Consensus 195 p~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~-~-~~~L~vDAN------~~~s~~---~A 263 (427)
|+....++.+.+++ +.+.+.|... +-+|.....+.+.++.+++.+ + .+-+.+|+. .+|..+ +.
T Consensus 78 ~l~v~GGi~~~~~~----~~~~~~Ga~~--v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~ 151 (241)
T PRK13585 78 PVQLGGGIRSAEDA----ASLLDLGVDR--VILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTP 151 (241)
T ss_pred cEEEcCCcCCHHHH----HHHHHcCCCE--EEEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCH
Confidence 33344456676654 3445678764 466754445667888888864 3 466788875 344211 23
Q ss_pred HHHHHHhhhCCCCCce---E--eCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeC
Q 014285 264 VEVLGKLNDMGVIPVL---F--EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (427)
Q Consensus 264 ~~~l~~L~~~~l~~~~---i--EqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk 334 (427)
.++++.+.+.++.... + +.....-+++.++++++ .+.+||...=.+.+..++.++.+.+ ++.+.+-
T Consensus 152 ~~~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~----~~~iPvia~GGI~~~~di~~~~~~G-a~gv~vg 222 (241)
T PRK13585 152 VEAAKRFEELGAGSILFTNVDVEGLLEGVNTEPVKELVD----SVDIPVIASGGVTTLDDLRALKEAG-AAGVVVG 222 (241)
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcC-CCEEEEE
Confidence 4566666666543111 2 22223346788888876 5789998888889999999877664 5665553
|
|
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=87.36 E-value=8.8 Score=37.14 Aligned_cols=104 Identities=15% Similarity=0.192 Sum_probs=69.7
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCC------------ChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHH
Q 014285 255 NEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRD------------DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKV 322 (427)
Q Consensus 255 N~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~------------d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~l 322 (427)
|-.|+.++.+++++.|++.|++ +||==++.. +.+.++++.+..+.++.+-....-......+++.+
T Consensus 14 ~~~f~~~~~~~ia~~L~~~GVd--~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a 91 (266)
T cd07944 14 NWDFGDEFVKAIYRALAAAGID--YVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPA 91 (266)
T ss_pred CccCCHHHHHHHHHHHHHCCCC--EEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHH
Confidence 4468999999999999999986 999876533 14556666542111233333333333455666666
Q ss_pred HHcCCCcEEEeCCCCccHHHHHHHHHHHHHcCCcEEEcc
Q 014285 323 MQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDG 361 (427)
Q Consensus 323 l~~~a~~~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~~~s 361 (427)
.+. .++.+.+-....-+..+++.++.|+++|+.+.++-
T Consensus 92 ~~~-gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~ 129 (266)
T cd07944 92 SGS-VVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNL 129 (266)
T ss_pred hcC-CcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEE
Confidence 554 47876665433348889999999999999988763
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=87.00 E-value=8.5 Score=36.68 Aligned_cols=135 Identities=9% Similarity=0.043 Sum_probs=91.0
Q ss_pred ceeeeeee--cCCC-HHHHHHHHHHHhhcCCcEEEEecc---------CCchhhHHHHHHHHHh--CCCc--EEEEeCCC
Q 014285 193 SLSTAITI--PAVS-PAEASELASKYCKLGFSTLKLNVG---------RNITADFDVLQAIHAV--HPHC--SFILDANE 256 (427)
Q Consensus 193 ~ip~~~~i--~~~~-~~~~~~~~~~~~~~Gf~~iKlKiG---------~~~~~d~~~l~~ir~~--~~~~--~L~vDAN~ 256 (427)
.+|+..-+ ++++ +..+.+.++++.+.|...+-|-=. .+.++-.++|+++++. .+++ --|-|+-.
T Consensus 69 ~iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~ 148 (238)
T PF13714_consen 69 SIPVIVDADTGYGNDPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFL 148 (238)
T ss_dssp SSEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHC
T ss_pred cCcEEEEcccccCchhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccc
Confidence 35654433 3345 889989999999999988877533 1456678889999884 3454 44788854
Q ss_pred --CCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeC
Q 014285 257 --GYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (427)
Q Consensus 257 --~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk 334 (427)
....++|++.+++..+.|-...|+|-+. +.++++++++ ..+.|+..-.. .+..+++++-+.+ +..+..-
T Consensus 149 ~~~~~~deaI~R~~aY~eAGAD~ifi~~~~---~~~~i~~~~~----~~~~Pl~v~~~-~~~~~~~eL~~lG-v~~v~~~ 219 (238)
T PF13714_consen 149 RAEEGLDEAIERAKAYAEAGADMIFIPGLQ---SEEEIERIVK----AVDGPLNVNPG-PGTLSAEELAELG-VKRVSYG 219 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-SEEEETTSS---SHHHHHHHHH----HHSSEEEEETT-SSSS-HHHHHHTT-ESEEEET
T ss_pred cCCCCHHHHHHHHHHHHHcCCCEEEeCCCC---CHHHHHHHHH----hcCCCEEEEcC-CCCCCHHHHHHCC-CcEEEEc
Confidence 6678999999999999887666888884 3566888886 45788876553 3224556666554 6666655
Q ss_pred CC
Q 014285 335 LA 336 (427)
Q Consensus 335 ~~ 336 (427)
++
T Consensus 220 ~~ 221 (238)
T PF13714_consen 220 NS 221 (238)
T ss_dssp SH
T ss_pred HH
Confidence 43
|
... |
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.89 E-value=10 Score=35.32 Aligned_cols=143 Identities=16% Similarity=0.241 Sum_probs=98.4
Q ss_pred ecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCce
Q 014285 200 IPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVL 279 (427)
Q Consensus 200 i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~ 279 (427)
+-..++++..+.++.+++.|++++-+-.-. ..-.+.++++++.+| +..+=|.--.+++|+.+..+.=.+ |
T Consensus 19 lr~~~~e~a~~~a~Ali~gGi~~IEITl~s--p~a~e~I~~l~~~~p--~~lIGAGTVL~~~q~~~a~~aGa~------f 88 (211)
T COG0800 19 IRGDDVEEALPLAKALIEGGIPAIEITLRT--PAALEAIRALAKEFP--EALIGAGTVLNPEQARQAIAAGAQ------F 88 (211)
T ss_pred EEeCCHHHHHHHHHHHHHcCCCeEEEecCC--CCHHHHHHHHHHhCc--ccEEccccccCHHHHHHHHHcCCC------E
Confidence 445789999999999999999999998864 234667888888888 778888888999987776554344 4
Q ss_pred EeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCC-ccHHHHHHHHHHHHHcCCcEE
Q 014285 280 FEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK-FGVLGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 280 iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~-~Gi~~~~~~~~~A~~~gi~~~ 358 (427)
+=-|-- ..+..+.|. ..++|+.-| +.|+.++..+++.+ ++.+-+=|.. +|-...++...- =--+++++
T Consensus 89 iVsP~~---~~ev~~~a~----~~~ip~~PG--~~TptEi~~Ale~G-~~~lK~FPa~~~Gg~~~~ka~~g-P~~~v~~~ 157 (211)
T COG0800 89 IVSPGL---NPEVAKAAN----RYGIPYIPG--VATPTEIMAALELG-ASALKFFPAEVVGGPAMLKALAG-PFPQVRFC 157 (211)
T ss_pred EECCCC---CHHHHHHHH----hCCCcccCC--CCCHHHHHHHHHcC-hhheeecCccccCcHHHHHHHcC-CCCCCeEe
Confidence 545543 345666665 688999886 67888998899876 5665555544 352222222111 11247788
Q ss_pred EcccC
Q 014285 359 IDGMI 363 (427)
Q Consensus 359 ~~s~~ 363 (427)
+++-.
T Consensus 158 pTGGV 162 (211)
T COG0800 158 PTGGV 162 (211)
T ss_pred ecCCC
Confidence 87644
|
|
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=86.86 E-value=8.5 Score=36.74 Aligned_cols=95 Identities=17% Similarity=0.193 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCC-------CCC--------CHHHHHHHHH
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDAN-------EGY--------TSEEAVEVLG 268 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN-------~~~--------s~~~A~~~l~ 268 (427)
++++..+.++++.+.|-..+|+--+. +-+++++++++.+=-+-=|.|+. ++| ..+++++.++
T Consensus 87 ~~~~~~~~~~~l~~aGa~gv~iED~~---~~~~~i~ai~~a~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ 163 (240)
T cd06556 87 APTAAFELAKTFMRAGAAGVKIEGGE---WHIETLQMLTAAAVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADAL 163 (240)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEcCcH---HHHHHHHHHHHcCCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHH
Confidence 56788888999999999999998653 34567888887542233477872 111 3678899999
Q ss_pred HhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEe
Q 014285 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA 309 (427)
Q Consensus 269 ~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~ 309 (427)
++++.|....|+|-+ +.+..+++++ ..++|+..
T Consensus 164 ay~~AGAd~i~~e~~----~~e~~~~i~~----~~~~P~~~ 196 (240)
T cd06556 164 AYAPAGADLIVMECV----PVELAKQITE----ALAIPLAG 196 (240)
T ss_pred HHHHcCCCEEEEcCC----CHHHHHHHHH----hCCCCEEE
Confidence 999988666699966 4677788886 57889865
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=86.80 E-value=51 Score=35.80 Aligned_cols=164 Identities=15% Similarity=0.193 Sum_probs=102.0
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCC--------chhhHHHHHHHHHhCCCcEEEEeCCC----CCC--HHHH-HHHHH
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRN--------ITADFDVLQAIHAVHPHCSFILDANE----GYT--SEEA-VEVLG 268 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~--------~~~d~~~l~~ir~~~~~~~L~vDAN~----~~s--~~~A-~~~l~ 268 (427)
+.+++.+.+..+.+.||..+-+--|.. -+++.++++.+|+..|+..+..=.++ +|+ +++. ..+++
T Consensus 24 ~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v~ 103 (592)
T PRK09282 24 RTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFVE 103 (592)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHHH
Confidence 577888888888889999999864432 24678999999998888877765443 343 3443 35666
Q ss_pred HhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEec-----CCCCCHHHH----HHHHHcCCCcEEEeCCCCc-
Q 014285 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVAD-----ESCRSLNDV----QKVMQENLASVVNIKLAKF- 338 (427)
Q Consensus 269 ~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~d-----E~~~~~~~~----~~ll~~~a~~~i~lk~~~~- 338 (427)
...+.++....|=.++. |...+....+.++ +.+.-+... ...++...+ +++.+. .+|.|.++=+-=
T Consensus 104 ~A~~~Gvd~irif~~ln--d~~n~~~~i~~ak-~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~-Gad~I~i~Dt~G~ 179 (592)
T PRK09282 104 KAAENGIDIFRIFDALN--DVRNMEVAIKAAK-KAGAHVQGTISYTTSPVHTIEKYVELAKELEEM-GCDSICIKDMAGL 179 (592)
T ss_pred HHHHCCCCEEEEEEecC--hHHHHHHHHHHHH-HcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHc-CCCEEEECCcCCC
Confidence 66676776445666664 4555554443333 234434322 223444443 455555 478888876552
Q ss_pred c-HHHHHHHHHHHH-HcCCcEEEcccCchhHHHHH
Q 014285 339 G-VLGTLQIIKATR-KSGLHLMIDGMIETRLATGF 371 (427)
Q Consensus 339 G-i~~~~~~~~~A~-~~gi~~~~~s~~es~ig~~a 371 (427)
. ...+.++++..+ +.++++-+|+-..+|++.+.
T Consensus 180 ~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla~An 214 (592)
T PRK09282 180 LTPYAAYELVKALKEEVDLPVQLHSHCTSGLAPMT 214 (592)
T ss_pred cCHHHHHHHHHHHHHhCCCeEEEEEcCCCCcHHHH
Confidence 2 455666666654 45888999887666665554
|
|
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=86.36 E-value=54 Score=35.63 Aligned_cols=163 Identities=14% Similarity=0.201 Sum_probs=101.5
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCC--------chhhHHHHHHHHHhCCCcEEEEeCCC----CCC--HHHHH-HHHH
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRN--------ITADFDVLQAIHAVHPHCSFILDANE----GYT--SEEAV-EVLG 268 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~--------~~~d~~~l~~ir~~~~~~~L~vDAN~----~~s--~~~A~-~~l~ 268 (427)
+.++|...+..+-+.||..+-+--|.. -+.+.++++.+|+..|+..|..=..| +|. +++.+ .+++
T Consensus 24 ~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~ 103 (596)
T PRK14042 24 RTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFVK 103 (596)
T ss_pred CHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHHH
Confidence 467788888888889999999988752 25789999999998887776543321 232 34444 5788
Q ss_pred HhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCC-e---EEe-cCCCCCHHHH----HHHHHcCCCcEEEeCCCCcc
Q 014285 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGI-S---VVA-DESCRSLNDV----QKVMQENLASVVNIKLAKFG 339 (427)
Q Consensus 269 ~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~i-P---Ia~-dE~~~~~~~~----~~ll~~~a~~~i~lk~~~~G 339 (427)
...+.|+.+..|=+++. |.+.+..-.+.+++ .+. - |+. .-..++++.+ +++.+. .++.|.+|=+- |
T Consensus 104 ~a~~~Gidv~Rifd~ln--d~~n~~~~i~~~k~-~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~-Gad~I~IkDta-G 178 (596)
T PRK14042 104 LAVNNGVDVFRVFDALN--DARNLKVAIDAIKS-HKKHAQGAICYTTSPVHTLDNFLELGKKLAEM-GCDSIAIKDMA-G 178 (596)
T ss_pred HHHHcCCCEEEEcccCc--chHHHHHHHHHHHH-cCCEEEEEEEecCCCCCCHHHHHHHHHHHHHc-CCCEEEeCCcc-c
Confidence 88888877666666664 33434332222222 222 1 111 2345676654 444444 47888886554 5
Q ss_pred ---HHHHHHHHHHHH-HcCCcEEEcccCchhHHHHH
Q 014285 340 ---VLGTLQIIKATR-KSGLHLMIDGMIETRLATGF 371 (427)
Q Consensus 340 ---i~~~~~~~~~A~-~~gi~~~~~s~~es~ig~~a 371 (427)
...+.+++...+ +.++++.+|+-...|++.+.
T Consensus 179 ~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~an 214 (596)
T PRK14042 179 LLTPTVTVELYAGLKQATGLPVHLHSHSTSGLASIC 214 (596)
T ss_pred CCCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcHHHH
Confidence 344556655544 45899999987666665544
|
|
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=86.08 E-value=56 Score=35.52 Aligned_cols=163 Identities=14% Similarity=0.177 Sum_probs=102.6
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCC--------chhhHHHHHHHHHhCCCcEEEEeCCC----CCC--HHHH-HHHHH
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRN--------ITADFDVLQAIHAVHPHCSFILDANE----GYT--SEEA-VEVLG 268 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~--------~~~d~~~l~~ir~~~~~~~L~vDAN~----~~s--~~~A-~~~l~ 268 (427)
+.+++...++.+.+.||..+-+--|.. -+.+.++++.+|+..|+..|..=+.| +|+ ++++ ..+++
T Consensus 25 ~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~ 104 (593)
T PRK14040 25 RLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVE 104 (593)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHH
Confidence 678888889899889999999855531 25789999999998888777543343 354 4555 35667
Q ss_pred HhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCe----EEe-cCCCCCHHHH----HHHHHcCCCcEEEeCCCCcc
Q 014285 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGIS----VVA-DESCRSLNDV----QKVMQENLASVVNIKLAKFG 339 (427)
Q Consensus 269 ~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iP----Ia~-dE~~~~~~~~----~~ll~~~a~~~i~lk~~~~G 339 (427)
...+.++...-|=.++. |.+.+....+.++ +.+.- |+. +...++...+ +.+.+. .+|.|.++=+. |
T Consensus 105 ~a~~~Gid~~rifd~ln--d~~~~~~ai~~ak-~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~-Gad~i~i~Dt~-G 179 (593)
T PRK14040 105 RAVKNGMDVFRVFDAMN--DPRNLETALKAVR-KVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDM-GVDSLCIKDMA-G 179 (593)
T ss_pred HHHhcCCCEEEEeeeCC--cHHHHHHHHHHHH-HcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHc-CCCEEEECCCC-C
Confidence 77777766556667765 4454444333333 23432 332 2334454443 344444 57888887655 4
Q ss_pred ---HHHHHHHHHHHH-HcCCcEEEcccCchhHHHHH
Q 014285 340 ---VLGTLQIIKATR-KSGLHLMIDGMIETRLATGF 371 (427)
Q Consensus 340 ---i~~~~~~~~~A~-~~gi~~~~~s~~es~ig~~a 371 (427)
...+.++++..+ +.++++-+|+-..+|++.+.
T Consensus 180 ~l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~An 215 (593)
T PRK14040 180 LLKPYAAYELVSRIKKRVDVPLHLHCHATTGLSTAT 215 (593)
T ss_pred CcCHHHHHHHHHHHHHhcCCeEEEEECCCCchHHHH
Confidence 445566655544 45899999987666666554
|
|
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=85.79 E-value=26 Score=34.37 Aligned_cols=132 Identities=15% Similarity=0.131 Sum_probs=82.1
Q ss_pred eeeeeeecCC-CHHHHHHHHHHHhhcCCcEEEEeccC-C--------------chhhHHHHHHHHHhC--C-CcEEEEeC
Q 014285 194 LSTAITIPAV-SPAEASELASKYCKLGFSTLKLNVGR-N--------------ITADFDVLQAIHAVH--P-HCSFILDA 254 (427)
Q Consensus 194 ip~~~~i~~~-~~~~~~~~~~~~~~~Gf~~iKlKiG~-~--------------~~~d~~~l~~ir~~~--~-~~~L~vDA 254 (427)
.|+..++... +++++.+.+++..+.|+..|-+.+|. + ++.=.+.++++|+.. | -++|+.|
T Consensus 100 ~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~- 178 (299)
T cd02940 100 KILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTPN- 178 (299)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCCC-
Confidence 3444555444 88888888877766799999998873 1 122234556666632 3 2444432
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCceE----------------eCCCC-----------------CCChhhHHHHHHhhcc
Q 014285 255 NEGYTSEEAVEVLGKLNDMGVIPVLF----------------EQPVH-----------------RDDWSGLHDVSNFARD 301 (427)
Q Consensus 255 N~~~s~~~A~~~l~~L~~~~l~~~~i----------------EqP~~-----------------~~d~~~~~~L~~~~r~ 301 (427)
.++..++++.+.+.+.. .| +.|.. +-.|+..+++++
T Consensus 179 -----~~~~~~~a~~~~~~Gad--gi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~---- 247 (299)
T cd02940 179 -----ITDIREIARAAKEGGAD--GVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIAR---- 247 (299)
T ss_pred -----chhHHHHHHHHHHcCCC--EEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHH----
Confidence 23456677777766543 22 22321 111455556654
Q ss_pred cc--CCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCc
Q 014285 302 TY--GISVVADESCRSLNDVQKVMQENLASVVNIKLAKF 338 (427)
Q Consensus 302 ~~--~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~ 338 (427)
.. .+||...=-+.+.+|+.+++..+ ++.+|+=-..+
T Consensus 248 ~~~~~ipIig~GGI~~~~da~~~l~aG-A~~V~i~ta~~ 285 (299)
T cd02940 248 APEPGLPISGIGGIESWEDAAEFLLLG-ASVVQVCTAVM 285 (299)
T ss_pred hcCCCCcEEEECCCCCHHHHHHHHHcC-CChheEceeec
Confidence 56 79999999999999999999865 77888755433
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=85.71 E-value=20 Score=35.91 Aligned_cols=141 Identities=10% Similarity=0.006 Sum_probs=69.3
Q ss_pred HHHhhcCCcEEEEeccC-CchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhh
Q 014285 213 SKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSG 291 (427)
Q Consensus 213 ~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~ 291 (427)
+...+.|.+.+.+-... +.+.-.+.++.+|+.|.++...+=.-..+++++..+.++.+.+++....+|-+..-.-..+.
T Consensus 94 ~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~ 173 (333)
T TIGR03217 94 KAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVDSAGAMLPDD 173 (333)
T ss_pred HHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEccCCCCCCHHH
Confidence 44455666665554443 12223344555555555443332222345666666777777666655446666665444455
Q ss_pred HHHHHHhhccccC--CeEEecCCC-CC--HHHHHHHHHcCCCcEEEeCCCCccH------HHHHHHHHHHHHcCCc
Q 014285 292 LHDVSNFARDTYG--ISVVADESC-RS--LNDVQKVMQENLASVVNIKLAKFGV------LGTLQIIKATRKSGLH 356 (427)
Q Consensus 292 ~~~L~~~~r~~~~--iPIa~dE~~-~~--~~~~~~ll~~~a~~~i~lk~~~~Gi------~~~~~~~~~A~~~gi~ 356 (427)
+.++.+.+++..+ +||...=+- .+ ......+++.+ ++. +|.+..|+ ..+..++...+..|+.
T Consensus 174 v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aG-a~~--iD~Sl~G~G~~aGN~~~E~lv~~l~~~g~~ 246 (333)
T TIGR03217 174 VRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAG-ATR--IDASLRGLGAGAGNAPLEVFVAVLDRLGWN 246 (333)
T ss_pred HHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhC-CCE--EEeecccccccccCccHHHHHHHHHhcCCC
Confidence 5554444444443 566442110 11 11123445544 443 66666542 2345556666665544
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=85.63 E-value=36 Score=32.98 Aligned_cols=163 Identities=16% Similarity=0.195 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCC--------chhhHHHHHHHHHhCCCcEEEEeCC----CCCC--HHH-HHHHHH
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRN--------ITADFDVLQAIHAVHPHCSFILDAN----EGYT--SEE-AVEVLG 268 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~--------~~~d~~~l~~ir~~~~~~~L~vDAN----~~~s--~~~-A~~~l~ 268 (427)
+.++..+.+..+.+.||..|-+-.+.. -+.|.+.++.+++..++.+|..=++ -+|. |.+ -...++
T Consensus 19 ~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di~ 98 (275)
T cd07937 19 RTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVE 98 (275)
T ss_pred cHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHHHH
Confidence 567777788888899999988876531 3567899999999776655542222 1221 222 234566
Q ss_pred HhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEe-----cCCCCCHHHH----HHHHHcCCCcEEEeCCCC-c
Q 014285 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA-----DESCRSLNDV----QKVMQENLASVVNIKLAK-F 338 (427)
Q Consensus 269 ~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~-----dE~~~~~~~~----~~ll~~~a~~~i~lk~~~-~ 338 (427)
...+.++....|--|+. +++.+.+..+.++ ..+.-+.. +-+..+...+ +++.+. .++.|.+.=+. .
T Consensus 99 ~~~~~g~~~iri~~~~~--~~~~~~~~i~~ak-~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~-Ga~~i~l~DT~G~ 174 (275)
T cd07937 99 KAAKNGIDIFRIFDALN--DVRNLEVAIKAVK-KAGKHVEGAICYTGSPVHTLEYYVKLAKELEDM-GADSICIKDMAGL 174 (275)
T ss_pred HHHHcCCCEEEEeecCC--hHHHHHHHHHHHH-HCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHc-CCCEEEEcCCCCC
Confidence 66666655334555654 5665655544443 23443332 2244555544 334444 47777775443 3
Q ss_pred c-HHHHHHHHHHHHH-cCCcEEEcccCchhHHHH
Q 014285 339 G-VLGTLQIIKATRK-SGLHLMIDGMIETRLATG 370 (427)
Q Consensus 339 G-i~~~~~~~~~A~~-~gi~~~~~s~~es~ig~~ 370 (427)
+ .....++++..++ .++++-+|+-...|++.+
T Consensus 175 ~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~a 208 (275)
T cd07937 175 LTPYAAYELVKALKKEVGLPIHLHTHDTSGLAVA 208 (275)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEecCCCChHHH
Confidence 3 4556666666554 478888887554444443
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=85.63 E-value=35 Score=34.73 Aligned_cols=89 Identities=10% Similarity=0.063 Sum_probs=57.7
Q ss_pred hhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceE-----eCCC--CCCChhhHHHHHHhhccccC
Q 014285 232 TADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF-----EQPV--HRDDWSGLHDVSNFARDTYG 304 (427)
Q Consensus 232 ~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~i-----EqP~--~~~d~~~~~~L~~~~r~~~~ 304 (427)
+.-.++++++|+.+--+.+++ ++..+.++++.+.+.+.....+ +|=- ...+|..+.++.+ ..+
T Consensus 119 ~l~~~ii~~vr~a~VtvkiRl------~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~----~~~ 188 (369)
T TIGR01304 119 ELLGERIAEVRDSGVITAVRV------SPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIG----ELD 188 (369)
T ss_pred HHHHHHHHHHHhcceEEEEec------CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHH----HCC
Confidence 444567777777542344444 3346677888887777652121 1100 1346778888875 578
Q ss_pred CeEEecCCCCCHHHHHHHHHcCCCcEEE
Q 014285 305 ISVVADESCRSLNDVQKVMQENLASVVN 332 (427)
Q Consensus 305 iPIa~dE~~~~~~~~~~ll~~~a~~~i~ 332 (427)
+||..+. +.+..+.+++++. .+|.|+
T Consensus 189 IPVI~G~-V~t~e~A~~~~~a-GaDgV~ 214 (369)
T TIGR01304 189 VPVIAGG-VNDYTTALHLMRT-GAAGVI 214 (369)
T ss_pred CCEEEeC-CCCHHHHHHHHHc-CCCEEE
Confidence 9998743 8899999999986 488877
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=85.60 E-value=20 Score=34.07 Aligned_cols=99 Identities=12% Similarity=0.103 Sum_probs=54.0
Q ss_pred HHHHHhhcCCcEEEEeccCC---------------chhhHHHHHHHHHhCCCcEEEE-eCCC-CCCHHHHHHHHHHhhhC
Q 014285 211 LASKYCKLGFSTLKLNVGRN---------------ITADFDVLQAIHAVHPHCSFIL-DANE-GYTSEEAVEVLGKLNDM 273 (427)
Q Consensus 211 ~~~~~~~~Gf~~iKlKiG~~---------------~~~d~~~l~~ir~~~~~~~L~v-DAN~-~~s~~~A~~~l~~L~~~ 273 (427)
.++.+.+.|+..+-+-+..+ ++.-.+.++.+++.+-++.+.+ |+.. ..++++..++++.+.++
T Consensus 79 ~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~ 158 (265)
T cd03174 79 GIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEA 158 (265)
T ss_pred hHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHc
Confidence 45555667777777666432 2223334455555565666666 5554 37888888888888888
Q ss_pred CCCCceEeCCCCCCChhhHHHHHHhhccccC-CeEEe
Q 014285 274 GVIPVLFEQPVHRDDWSGLHDVSNFARDTYG-ISVVA 309 (427)
Q Consensus 274 ~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~-iPIa~ 309 (427)
+....++-+-.-.-..+.+.++-+.+++..+ +||..
T Consensus 159 g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~ 195 (265)
T cd03174 159 GADEISLKDTVGLATPEEVAELVKALREALPDVPLGL 195 (265)
T ss_pred CCCEEEechhcCCcCHHHHHHHHHHHHHhCCCCeEEE
Confidence 7653233332222223344444333333444 55543
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=85.47 E-value=14 Score=37.14 Aligned_cols=103 Identities=15% Similarity=0.130 Sum_probs=71.3
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCceEeC--------------CCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHH
Q 014285 255 NEGYTSEEAVEVLGKLNDMGVIPVLFEQ--------------PVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQ 320 (427)
Q Consensus 255 N~~~s~~~A~~~l~~L~~~~l~~~~iEq--------------P~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~ 320 (427)
|..|+.++.+++++.|.+.|+. +||= |....+++.++++.+.++ ++.+-..+.=...+..+++
T Consensus 18 ~~~f~~~~~~~ia~~Ld~aGV~--~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~-~~~~~~ll~pg~~~~~dl~ 94 (333)
T TIGR03217 18 RHQFTIEQVRAIAAALDEAGVD--AIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVK-RAKVAVLLLPGIGTVHDLK 94 (333)
T ss_pred CCcCCHHHHHHHHHHHHHcCCC--EEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCC-CCEEEEEeccCccCHHHHH
Confidence 4457999999999999999985 8998 444567787877765322 2333323322234678888
Q ss_pred HHHHcCCCcEEEeCCCCccHHHHHHHHHHHHHcCCcEEEcc
Q 014285 321 KVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDG 361 (427)
Q Consensus 321 ~ll~~~a~~~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~~~s 361 (427)
.+.+.+ ++.|.+-....=...+.+.++.|++.|..+...-
T Consensus 95 ~a~~~g-vd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l 134 (333)
T TIGR03217 95 AAYDAG-ARTVRVATHCTEADVSEQHIGMARELGMDTVGFL 134 (333)
T ss_pred HHHHCC-CCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEE
Confidence 888764 7887764332215567899999999999886543
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=85.39 E-value=7.7 Score=36.28 Aligned_cols=96 Identities=13% Similarity=0.120 Sum_probs=70.3
Q ss_pred CCCHHHHHHHHHHhhhCCCCCceEeCCCCCCCh-hhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCC
Q 014285 257 GYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW-SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKL 335 (427)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~-~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~ 335 (427)
.-++++|++.++.|.+.+++ .||=++...+. +.+++|++. ...+-|-.| .+.+.++++.+++.+ .+++.- |
T Consensus 23 ~~~~~~a~~i~~al~~~Gi~--~iEitl~~~~~~~~I~~l~~~---~p~~~IGAG-TVl~~~~a~~a~~aG-A~Fivs-P 94 (212)
T PRK05718 23 INKLEDAVPLAKALVAGGLP--VLEVTLRTPAALEAIRLIAKE---VPEALIGAG-TVLNPEQLAQAIEAG-AQFIVS-P 94 (212)
T ss_pred cCCHHHHHHHHHHHHHcCCC--EEEEecCCccHHHHHHHHHHH---CCCCEEEEe-eccCHHHHHHHHHcC-CCEEEC-C
Confidence 34789999999999999986 89999875543 345666542 234556555 778889999999987 565443 2
Q ss_pred CCccHHHHHHHHHHHHHcCCcEEEcccCch
Q 014285 336 AKFGVLGTLQIIKATRKSGLHLMIDGMIET 365 (427)
Q Consensus 336 ~~~Gi~~~~~~~~~A~~~gi~~~~~s~~es 365 (427)
|+.+ ++++.|++++++++++++.-+
T Consensus 95 ---~~~~--~vi~~a~~~~i~~iPG~~Tpt 119 (212)
T PRK05718 95 ---GLTP--PLLKAAQEGPIPLIPGVSTPS 119 (212)
T ss_pred ---CCCH--HHHHHHHHcCCCEeCCCCCHH
Confidence 2222 788889999999999987533
|
|
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=85.22 E-value=9.3 Score=36.44 Aligned_cols=131 Identities=21% Similarity=0.247 Sum_probs=82.0
Q ss_pred eeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCC------CCCH---HHHHHHHH
Q 014285 198 ITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANE------GYTS---EEAVEVLG 268 (427)
Q Consensus 198 ~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~------~~s~---~~A~~~l~ 268 (427)
...++.+.+++ +++.+.|...+ =+|.-.-+|.+.++.+.+.+.++.+.+|+.. +|.. -+..++++
T Consensus 78 vGGGIrs~e~~----~~~l~~Ga~rv--vigT~a~~~p~~l~~~~~~~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~ 151 (241)
T PRK14114 78 IGGGIRSLDYA----EKLRKLGYRRQ--IVSSKVLEDPSFLKFLKEIDVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLK 151 (241)
T ss_pred EecCCCCHHHH----HHHHHCCCCEE--EECchhhCCHHHHHHHHHhCCCEEEEEEccCCEEeeCCCeecCCCCHHHHHH
Confidence 34455666554 45667787643 4564333566778888544567899999843 3421 23466777
Q ss_pred HhhhCCCCCceEeCCCCC------CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHc-----CCCcEEEeCCCC
Q 014285 269 KLNDMGVIPVLFEQPVHR------DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQE-----NLASVVNIKLAK 337 (427)
Q Consensus 269 ~L~~~~l~~~~iEqP~~~------~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~-----~a~~~i~lk~~~ 337 (427)
.++++++. ..|=--+.. -|++.++++++ .+++||.+.=-+.+..|+.++.+. +.++.+.+=-+.
T Consensus 152 ~~~~~g~~-~ii~tdI~rdGt~~G~d~el~~~l~~----~~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al 226 (241)
T PRK14114 152 RLKEYGLE-EIVHTEIEKDGTLQEHDFSLTRKIAI----EAEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAF 226 (241)
T ss_pred HHHhcCCC-EEEEEeechhhcCCCcCHHHHHHHHH----HCCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHH
Confidence 77777653 333333322 36777888875 578999888888999999988875 225655543333
Q ss_pred -cc
Q 014285 338 -FG 339 (427)
Q Consensus 338 -~G 339 (427)
-|
T Consensus 227 ~~g 229 (241)
T PRK14114 227 LEG 229 (241)
T ss_pred HCC
Confidence 36
|
|
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=84.73 E-value=32 Score=34.37 Aligned_cols=122 Identities=18% Similarity=0.293 Sum_probs=83.1
Q ss_pred HHHHHHHHHhhcCC--cEEEEeccC-CchhhHHHHHHHHHhCCCcEEEE-eCCCCCCHHHHHHHHHHhhh---CCCCC--
Q 014285 207 EASELASKYCKLGF--STLKLNVGR-NITADFDVLQAIHAVHPHCSFIL-DANEGYTSEEAVEVLGKLND---MGVIP-- 277 (427)
Q Consensus 207 ~~~~~~~~~~~~Gf--~~iKlKiG~-~~~~d~~~l~~ir~~~~~~~L~v-DAN~~~s~~~A~~~l~~L~~---~~l~~-- 277 (427)
+..+++++++++|. ..+-+.+-. +.+.-.+.++.||+.+|++.+++ |.- |.++|....+.=.+ .+.+.
T Consensus 97 ~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~---t~e~a~~l~~aGad~i~vg~~~G~ 173 (326)
T PRK05458 97 DEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVG---TPEAVRELENAGADATKVGIGPGK 173 (326)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecC---CHHHHHHHHHcCcCEEEECCCCCc
Confidence 34577888889966 898887753 34556677999999999988888 766 78887666553111 01000
Q ss_pred ceEeCCC---CCCChh--hHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCC
Q 014285 278 VLFEQPV---HRDDWS--GLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLA 336 (427)
Q Consensus 278 ~~iEqP~---~~~d~~--~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~ 336 (427)
..+|++. ...+|. .++++++ ...+||.+|--+.+..|+.+++..+ ++.+.+--.
T Consensus 174 ~~~t~~~~g~~~~~w~l~ai~~~~~----~~~ipVIAdGGI~~~~Di~KaLa~G-A~aV~vG~~ 232 (326)
T PRK05458 174 VCITKIKTGFGTGGWQLAALRWCAK----AARKPIIADGGIRTHGDIAKSIRFG-ATMVMIGSL 232 (326)
T ss_pred ccccccccCCCCCccHHHHHHHHHH----HcCCCEEEeCCCCCHHHHHHHHHhC-CCEEEechh
Confidence 1246544 233443 3566654 4579999999999999999999885 677766533
|
|
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=84.56 E-value=16 Score=36.35 Aligned_cols=133 Identities=14% Similarity=0.081 Sum_probs=77.2
Q ss_pred eeeeeeecCCC-------HHHHHHHHHHHhhcCCcEEEEeccC----------CchhhHHHHHHHHHhCC----CcEEEE
Q 014285 194 LSTAITIPAVS-------PAEASELASKYCKLGFSTLKLNVGR----------NITADFDVLQAIHAVHP----HCSFIL 252 (427)
Q Consensus 194 ip~~~~i~~~~-------~~~~~~~~~~~~~~Gf~~iKlKiG~----------~~~~d~~~l~~ir~~~~----~~~L~v 252 (427)
+|+..++...+ .++..+.+++. ..+...+-+.++. +.+.-.+.++++|+... ++.+.|
T Consensus 129 ~plivsi~g~~~~~~~~~~~d~~~~~~~~-~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~v 207 (327)
T cd04738 129 GPLGVNIGKNKDTPLEDAVEDYVIGVRKL-GPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLV 207 (327)
T ss_pred CeEEEEEeCCCCCcccccHHHHHHHHHHH-HhhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEE
Confidence 45555554432 45555555554 2346677777752 22334466788887421 333443
Q ss_pred eCCCCCCHHHHHHHHHHhhhCCCCCceEe--C----------CCCCC-------------ChhhHHHHHHhhcccc--CC
Q 014285 253 DANEGYTSEEAVEVLGKLNDMGVIPVLFE--Q----------PVHRD-------------DWSGLHDVSNFARDTY--GI 305 (427)
Q Consensus 253 DAN~~~s~~~A~~~l~~L~~~~l~~~~iE--q----------P~~~~-------------d~~~~~~L~~~~r~~~--~i 305 (427)
=-.-.++.++..++++.+++.++. +|. - |.... .++..+++++ .. .+
T Consensus 208 Kl~~~~~~~~~~~ia~~l~~aGad--~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~----~~~~~i 281 (327)
T cd04738 208 KIAPDLSDEELEDIADVALEHGVD--GIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYK----LTGGKI 281 (327)
T ss_pred EeCCCCCHHHHHHHHHHHHHcCCc--EEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHH----HhCCCC
Confidence 334446777888888999887764 443 1 11100 1233344443 34 68
Q ss_pred eEEecCCCCCHHHHHHHHHcCCCcEEEeC
Q 014285 306 SVVADESCRSLNDVQKVMQENLASVVNIK 334 (427)
Q Consensus 306 PIa~dE~~~~~~~~~~ll~~~a~~~i~lk 334 (427)
||..-=-+.+..|+.+++..+ +|.+++=
T Consensus 282 pIi~~GGI~t~~da~e~l~aG-Ad~V~vg 309 (327)
T cd04738 282 PIIGVGGISSGEDAYEKIRAG-ASLVQLY 309 (327)
T ss_pred cEEEECCCCCHHHHHHHHHcC-CCHHhcc
Confidence 888877888888988888755 7776654
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=84.47 E-value=11 Score=36.40 Aligned_cols=103 Identities=14% Similarity=0.235 Sum_probs=70.1
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCceEeC--CC-CCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCC---Cc
Q 014285 256 EGYTSEEAVEVLGKLNDMGVIPVLFEQ--PV-HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL---AS 329 (427)
Q Consensus 256 ~~~s~~~A~~~l~~L~~~~l~~~~iEq--P~-~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a---~~ 329 (427)
..|+.++.+++++.|.+.|+. .||= |. .+++++.++.+.+. ..+..+..= .-.+..+++.+++.+. ++
T Consensus 15 ~~~~~~~k~~i~~~L~~~Gv~--~iEvg~~~~~~~~~~~~~~l~~~---~~~~~~~~l-~r~~~~~v~~a~~~~~~~~~~ 88 (268)
T cd07940 15 VSLTPEEKLEIARQLDELGVD--VIEAGFPAASPGDFEAVKRIARE---VLNAEICGL-ARAVKKDIDAAAEALKPAKVD 88 (268)
T ss_pred CCCCHHHHHHHHHHHHHcCCC--EEEEeCCCCCHHHHHHHHHHHHh---CCCCEEEEE-ccCCHhhHHHHHHhCCCCCCC
Confidence 357899999999999999986 8997 54 45667777777642 234554421 0135677888877653 66
Q ss_pred EEEeCCCC----------c---c-HHHHHHHHHHHHHcCCcEEEcccCc
Q 014285 330 VVNIKLAK----------F---G-VLGTLQIIKATRKSGLHLMIDGMIE 364 (427)
Q Consensus 330 ~i~lk~~~----------~---G-i~~~~~~~~~A~~~gi~~~~~s~~e 364 (427)
.|.+=.+. . - +....+.++.|++.|+.+.++++..
T Consensus 89 ~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~ 137 (268)
T cd07940 89 RIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDA 137 (268)
T ss_pred EEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecC
Confidence 66653221 1 1 4557789999999999999887643
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=84.29 E-value=57 Score=34.13 Aligned_cols=164 Identities=13% Similarity=0.179 Sum_probs=97.2
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCCc--------hhhHHHHHHHHHhCCCcEEEEeC---C-CCCC--HHHH-HHHHH
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRNI--------TADFDVLQAIHAVHPHCSFILDA---N-EGYT--SEEA-VEVLG 268 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~~--------~~d~~~l~~ir~~~~~~~L~vDA---N-~~~s--~~~A-~~~l~ 268 (427)
+.+++.+.++.+.+.||..|-+--|..+ +.+.++++.+++..++..+..=+ | -+|+ ++++ .++++
T Consensus 24 ~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v~ 103 (448)
T PRK12331 24 TTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFVQ 103 (448)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHHH
Confidence 5788888899998999999999544322 34788999999987877765322 2 2442 3443 35666
Q ss_pred HhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCe----EE-ecCCCCCHHHH----HHHHHcCCCcEEEeCCCC-c
Q 014285 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGIS----VV-ADESCRSLNDV----QKVMQENLASVVNIKLAK-F 338 (427)
Q Consensus 269 ~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iP----Ia-~dE~~~~~~~~----~~ll~~~a~~~i~lk~~~-~ 338 (427)
+..+.++...-|=.++. +...+.+..+.++ +.+.- |+ .+...++...+ +++.+.+ +|.|.++=+- +
T Consensus 104 ~A~~~Gvd~irif~~ln--d~~n~~~~v~~ak-~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~G-ad~I~i~Dt~G~ 179 (448)
T PRK12331 104 KSVENGIDIIRIFDALN--DVRNLETAVKATK-KAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMG-ADSICIKDMAGI 179 (448)
T ss_pred HHHHCCCCEEEEEEecC--cHHHHHHHHHHHH-HcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcC-CCEEEEcCCCCC
Confidence 66666765344555553 3333443333332 23432 21 12234454433 4555554 7788776544 2
Q ss_pred c-HHHHHHHHHHHH-HcCCcEEEcccCchhHHHHH
Q 014285 339 G-VLGTLQIIKATR-KSGLHLMIDGMIETRLATGF 371 (427)
Q Consensus 339 G-i~~~~~~~~~A~-~~gi~~~~~s~~es~ig~~a 371 (427)
. ...+.+++...+ +.++++.+|+-...|++.+.
T Consensus 180 l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN 214 (448)
T PRK12331 180 LTPYVAYELVKRIKEAVTVPLEVHTHATSGIAEMT 214 (448)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEecCCCCcHHHH
Confidence 3 455666666554 45899999986666655543
|
|
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=83.71 E-value=21 Score=33.01 Aligned_cols=142 Identities=15% Similarity=0.257 Sum_probs=95.7
Q ss_pred ecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCce
Q 014285 200 IPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVL 279 (427)
Q Consensus 200 i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~ 279 (427)
+...++++..+.++.+.+.|++.+-+-.-. ..-.+.++.+++.+|+ +.|=|-.-.|.++|.+.++.=.+ |
T Consensus 14 ir~~~~~~a~~~~~al~~gGi~~iEiT~~t--~~a~~~I~~l~~~~p~--~~vGAGTV~~~e~a~~a~~aGA~------F 83 (196)
T PF01081_consen 14 IRGDDPEDAVPIAEALIEGGIRAIEITLRT--PNALEAIEALRKEFPD--LLVGAGTVLTAEQAEAAIAAGAQ------F 83 (196)
T ss_dssp ETTSSGGGHHHHHHHHHHTT--EEEEETTS--TTHHHHHHHHHHHHTT--SEEEEES--SHHHHHHHHHHT-S------E
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEecCC--ccHHHHHHHHHHHCCC--CeeEEEeccCHHHHHHHHHcCCC------E
Confidence 445678888999999999999999988854 3446778888888887 55677777888887776664333 6
Q ss_pred EeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCc-c-HHHHHHHHHHHHHcCCcE
Q 014285 280 FEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-G-VLGTLQIIKATRKSGLHL 357 (427)
Q Consensus 280 iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~-G-i~~~~~~~~~A~~~gi~~ 357 (427)
+=-|.- -+++.+.|+ +.++|..-| +.|+.++.++++.+ ++++-+=|... | ..-...+..- --++++
T Consensus 84 ivSP~~---~~~v~~~~~----~~~i~~iPG--~~TptEi~~A~~~G-~~~vK~FPA~~~GG~~~ik~l~~p--~p~~~~ 151 (196)
T PF01081_consen 84 IVSPGF---DPEVIEYAR----EYGIPYIPG--VMTPTEIMQALEAG-ADIVKLFPAGALGGPSYIKALRGP--FPDLPF 151 (196)
T ss_dssp EEESS-----HHHHHHHH----HHTSEEEEE--ESSHHHHHHHHHTT--SEEEETTTTTTTHHHHHHHHHTT--TTT-EE
T ss_pred EECCCC---CHHHHHHHH----HcCCcccCC--cCCHHHHHHHHHCC-CCEEEEecchhcCcHHHHHHHhcc--CCCCeE
Confidence 666654 245566665 578888875 67999999999876 78988888664 7 4443333322 237899
Q ss_pred EEcccC
Q 014285 358 MIDGMI 363 (427)
Q Consensus 358 ~~~s~~ 363 (427)
++++-+
T Consensus 152 ~ptGGV 157 (196)
T PF01081_consen 152 MPTGGV 157 (196)
T ss_dssp EEBSS-
T ss_pred EEcCCC
Confidence 988744
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=83.69 E-value=25 Score=35.79 Aligned_cols=78 Identities=19% Similarity=0.248 Sum_probs=47.5
Q ss_pred ChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCC---------Cc--cH---HHHHHHHHHHHHc
Q 014285 288 DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLA---------KF--GV---LGTLQIIKATRKS 353 (427)
Q Consensus 288 d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~---------~~--Gi---~~~~~~~~~A~~~ 353 (427)
++..+.++.+ +.++||..+. +.+.++.+++++. .+|+|.+-.. .. |+ +...++++.++++
T Consensus 175 ~~~~i~~~ik----~~~ipVIaG~-V~t~e~A~~l~~a-GAD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~ 248 (368)
T PRK08649 175 EPLNLKEFIY----ELDVPVIVGG-CVTYTTALHLMRT-GAAGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDY 248 (368)
T ss_pred CHHHHHHHHH----HCCCCEEEeC-CCCHHHHHHHHHc-CCCEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHh
Confidence 5667777765 4689988744 8899999999985 5888765411 11 21 1223333333433
Q ss_pred -------CCcEEEcccCchhHHHHH
Q 014285 354 -------GLHLMIDGMIETRLATGF 371 (427)
Q Consensus 354 -------gi~~~~~s~~es~ig~~a 371 (427)
+++++-.+-+.++-..+.
T Consensus 249 l~~~~~~~vpVIAdGGI~~~~diak 273 (368)
T PRK08649 249 LDETGGRYVHVIADGGIGTSGDIAK 273 (368)
T ss_pred hhhhcCCCCeEEEeCCCCCHHHHHH
Confidence 689988776655433333
|
|
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=83.51 E-value=13 Score=36.47 Aligned_cols=118 Identities=12% Similarity=0.222 Sum_probs=77.4
Q ss_pred HHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHh----CC--CcEEE-E----e----CCCCC-CHHHHHHHHHHhhh--
Q 014285 212 ASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV----HP--HCSFI-L----D----ANEGY-TSEEAVEVLGKLND-- 272 (427)
Q Consensus 212 ~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~----~~--~~~L~-v----D----AN~~~-s~~~A~~~l~~L~~-- 272 (427)
+.+.++.||+.+-+.... ++++.+++.+.+.+. += +.+|- | | ...-| +|++|.+|.++..-
T Consensus 93 i~~ai~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~ 172 (285)
T PRK07709 93 CKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDC 172 (285)
T ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCE
Confidence 345678999999999775 788999988887762 21 22221 1 1 11126 59999999987531
Q ss_pred ----C-CCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCC
Q 014285 273 ----M-GVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLA 336 (427)
Q Consensus 273 ----~-~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~ 336 (427)
. ..|=.|-.+| .-|++-++++++ .+++|+.+.= |-...++++++++.+ +.=||+...
T Consensus 173 LAvaiGt~HG~Y~~~p--~L~~~~L~~I~~----~~~iPLVLHGgSG~~~e~~~~ai~~G-i~KiNi~T~ 235 (285)
T PRK07709 173 LAPALGSVHGPYKGEP--NLGFAEMEQVRD----FTGVPLVLHGGTGIPTADIEKAISLG-TSKINVNTE 235 (285)
T ss_pred EEEeecccccCcCCCC--ccCHHHHHHHHH----HHCCCEEEeCCCCCCHHHHHHHHHcC-CeEEEeChH
Confidence 1 0121244445 457888888875 6789997754 667778899999876 444666654
|
|
| >PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=83.38 E-value=14 Score=35.71 Aligned_cols=146 Identities=16% Similarity=0.178 Sum_probs=83.8
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHH----HHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCC-CCC
Q 014285 203 VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQ----AIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMG-VIP 277 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~----~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~-l~~ 277 (427)
.+++.+.+.+++.+++|-..+-+-.+...+++.+++. .+++. -++.|.||....=..+.|++. ..... +.+
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~-~~~plsIDT~~~~v~eaaL~~---~~G~~iINs 97 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQEV-VDVPLCIDSPNPAAIEAGLKV---AKGPPLINS 97 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHHh-CCCCEEEeCCCHHHHHHHHHh---CCCCCEEEe
Confidence 4678888899999999999998888766566666543 33332 268899997554344444443 22211 111
Q ss_pred ceEeCCCCCCChhhHHHHHHhhccccCCeEE---ecCC-CC-CH----HHHH----HHHHcCCC--cEEEeCCCCc--c-
Q 014285 278 VLFEQPVHRDDWSGLHDVSNFARDTYGISVV---ADES-CR-SL----NDVQ----KVMQENLA--SVVNIKLAKF--G- 339 (427)
Q Consensus 278 ~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa---~dE~-~~-~~----~~~~----~ll~~~a~--~~i~lk~~~~--G- 339 (427)
.+-|+ +..+.+..+++ +.+.|+. .|+. .. +. ..++ .+.+.+ + +=+.+||... |
T Consensus 98 Is~~~----~~~~~~~~l~~----~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~G-I~~~~IilDPgi~~~~~ 168 (261)
T PRK07535 98 VSAEG----EKLEVVLPLVK----KYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYG-IPPEDIYIDPLVLPLSA 168 (261)
T ss_pred CCCCC----ccCHHHHHHHH----HhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcC-CCHhHEEEeCCCCcccC
Confidence 13332 22456667665 4666665 3321 11 11 2222 233333 3 4588999664 3
Q ss_pred ----HHHHHHHHHHHHHc--CCcEEEcc
Q 014285 340 ----VLGTLQIIKATRKS--GLHLMIDG 361 (427)
Q Consensus 340 ----i~~~~~~~~~A~~~--gi~~~~~s 361 (427)
....++.++..++. |.++.++-
T Consensus 169 ~~~~~~~~l~~i~~l~~~~pg~p~l~G~ 196 (261)
T PRK07535 169 AQDAGPEVLETIRRIKELYPKVHTTCGL 196 (261)
T ss_pred ChHHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 22346666766665 89998764
|
|
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=83.33 E-value=39 Score=31.41 Aligned_cols=116 Identities=16% Similarity=0.194 Sum_probs=73.8
Q ss_pred HHHHHHhhcCCcEEEEeccC--Cc--hhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCC-----ceE
Q 014285 210 ELASKYCKLGFSTLKLNVGR--NI--TADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIP-----VLF 280 (427)
Q Consensus 210 ~~~~~~~~~Gf~~iKlKiG~--~~--~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~-----~~i 280 (427)
+++++..+.|-..+-+-... .+ ++..+.++.+++. +++.+.++.+ +.+++.+ +.+.+... ...
T Consensus 79 ~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi~~v~---t~ee~~~----a~~~G~d~i~~~~~g~ 150 (221)
T PRK01130 79 KEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY-PGQLLMADCS---TLEEGLA----AQKLGFDFIGTTLSGY 150 (221)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEEEeCC---CHHHHHH----HHHcCCCEEEcCCcee
Confidence 34566778898876665432 12 4455677888876 7888998876 6777643 33333320 012
Q ss_pred eCC---CCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCc
Q 014285 281 EQP---VHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF 338 (427)
Q Consensus 281 EqP---~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~ 338 (427)
+.. ....+++.++++++ ..++||...=-+.+..++.++++.+ +|.+.+=-..+
T Consensus 151 t~~~~~~~~~~~~~i~~i~~----~~~iPvia~GGI~t~~~~~~~l~~G-adgV~iGsai~ 206 (221)
T PRK01130 151 TEETKKPEEPDFALLKELLK----AVGCPVIAEGRINTPEQAKKALELG-AHAVVVGGAIT 206 (221)
T ss_pred ecCCCCCCCcCHHHHHHHHH----hCCCCEEEECCCCCHHHHHHHHHCC-CCEEEEchHhc
Confidence 211 12234566666664 5689999888888999999999876 78877654333
|
|
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=82.92 E-value=10 Score=37.11 Aligned_cols=56 Identities=14% Similarity=0.208 Sum_probs=47.3
Q ss_pred ccCCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCCCcc----HHHHHHHHHHHHHcCCcEE
Q 014285 302 TYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 302 ~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (427)
+.++||++.= ...+...+++.++.+ ++.|.+|-|..- +..+++++++|+++|+.+-
T Consensus 72 ~~~VPValHLDHg~~~e~i~~ai~~G-FtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VE 132 (286)
T PRK12738 72 TYNMPLALHLDHHESLDDIRRKVHAG-VRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVE 132 (286)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHcC-CCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 6789999874 556788889999885 899999999873 7789999999999999884
|
|
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=82.82 E-value=13 Score=36.46 Aligned_cols=115 Identities=15% Similarity=0.241 Sum_probs=76.9
Q ss_pred HHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHh----CC--CcEEE-E---------eCC-CCC-CHHHHHHHHHHhh
Q 014285 211 LASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV----HP--HCSFI-L---------DAN-EGY-TSEEAVEVLGKLN 271 (427)
Q Consensus 211 ~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~----~~--~~~L~-v---------DAN-~~~-s~~~A~~~l~~L~ 271 (427)
.+++.++.||+.+-+.-.. ++++.++.-+.+.+. += +.+|- | +.+ ..| +|++|.+|+++..
T Consensus 89 ~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~Tg 168 (284)
T PRK09195 89 DIAQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATG 168 (284)
T ss_pred HHHHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHC
Confidence 3555678999999999764 788888888777662 21 12221 1 111 225 5999999998632
Q ss_pred ----------hCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCC
Q 014285 272 ----------DMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKL 335 (427)
Q Consensus 272 ----------~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~ 335 (427)
-.|+ |-.+| .-|++-++++++ .+++|+.+.= |-...++++++++.+ +.=||+..
T Consensus 169 vD~LAvaiGt~HG~---y~~~p--~Ld~~~L~~I~~----~~~vPLVLHGgSG~~~e~~~~ai~~G-i~KiNi~T 233 (284)
T PRK09195 169 IDSLAVAIGTAHGM---YKGEP--KLDFDRLENIRQ----WVNIPLVLHGASGLPTKDIQQTIKLG-ICKVNVAT 233 (284)
T ss_pred cCEEeeccCccccc---cCCCC--cCCHHHHHHHHH----HhCCCeEEecCCCCCHHHHHHHHHcC-CeEEEeCc
Confidence 1332 55555 568899999976 5789987754 667778889998876 44456654
|
|
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=82.60 E-value=32 Score=34.56 Aligned_cols=141 Identities=9% Similarity=0.005 Sum_probs=67.6
Q ss_pred HHHhhcCCcEEEEeccC-CchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhh
Q 014285 213 SKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSG 291 (427)
Q Consensus 213 ~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~ 291 (427)
+...+.|.+.+.+-... +.+.-.+.++.+|+.|.++...+=--..+++++..+.++.+.+++....+|-+-.-.-..+.
T Consensus 95 ~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~ 174 (337)
T PRK08195 95 KMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVVDSAGALLPED 174 (337)
T ss_pred HHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHH
Confidence 34445666665555443 12223344555555554444322222455666666666666666654445555554444444
Q ss_pred HHHHHHhhcccc--CCeEEecCCC-CC--HHHHHHHHHcCCCcEEEeCCCCccH------HHHHHHHHHHHHcCCc
Q 014285 292 LHDVSNFARDTY--GISVVADESC-RS--LNDVQKVMQENLASVVNIKLAKFGV------LGTLQIIKATRKSGLH 356 (427)
Q Consensus 292 ~~~L~~~~r~~~--~iPIa~dE~~-~~--~~~~~~ll~~~a~~~i~lk~~~~Gi------~~~~~~~~~A~~~gi~ 356 (427)
..++-+.+++.. ++||...=+- .+ ......+++.+ ++ ++|.+..|+ ..+..++...+..|+.
T Consensus 175 v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aG-a~--~iD~Sl~GlG~~aGN~~tE~lv~~L~~~g~~ 247 (337)
T PRK08195 175 VRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAG-AT--RIDGSLAGLGAGAGNTPLEVLVAVLDRMGWE 247 (337)
T ss_pred HHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhC-CC--EEEecChhhcccccCccHHHHHHHHHhcCCC
Confidence 444444444344 4566442110 11 11124445544 34 466666542 2245555566655544
|
|
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=82.21 E-value=29 Score=36.26 Aligned_cols=101 Identities=8% Similarity=0.060 Sum_probs=57.9
Q ss_pred HHHHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHhCCCcEEEEeCC--CCCCHHHHHHHHHHhhhCCCCCceEeCCCC
Q 014285 209 SELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDAN--EGYTSEEAVEVLGKLNDMGVIPVLFEQPVH 285 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~~~~~~L~vDAN--~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~ 285 (427)
.+.+++..+.|.+.|.+-... +.+.=.+.++.+++.|..+...+-.- ..++++...++++.+.+.+.+...|=+..-
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G 178 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIKDMAG 178 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 445566667777776666654 22222223455555554433333221 245667777777777777766556666665
Q ss_pred CCChhhHHHHHHhhccccCCeEEe
Q 014285 286 RDDWSGLHDVSNFARDTYGISVVA 309 (427)
Q Consensus 286 ~~d~~~~~~L~~~~r~~~~iPIa~ 309 (427)
--......+|.+.+++..++||..
T Consensus 179 ~l~P~~v~~lv~alk~~~~~pi~~ 202 (448)
T PRK12331 179 ILTPYVAYELVKRIKEAVTVPLEV 202 (448)
T ss_pred CCCHHHHHHHHHHHHHhcCCeEEE
Confidence 555566666665555556677755
|
|
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=81.89 E-value=15 Score=36.00 Aligned_cols=119 Identities=15% Similarity=0.301 Sum_probs=77.4
Q ss_pred HHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHh----CC--CcEE----------EEeCCCC-C-CHHHHHHHHHHhh
Q 014285 211 LASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV----HP--HCSF----------ILDANEG-Y-TSEEAVEVLGKLN 271 (427)
Q Consensus 211 ~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~----~~--~~~L----------~vDAN~~-~-s~~~A~~~l~~L~ 271 (427)
.+.+.++.||+.+-+.-.. ++++.++..+.+.+. += +.+| ..|.+.. | +|++|.+|.++..
T Consensus 89 ~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~Tg 168 (284)
T PRK12737 89 DIKKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTG 168 (284)
T ss_pred HHHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhC
Confidence 3455678899999998764 788888887777662 21 2222 1122222 6 5999999998642
Q ss_pred h------CC-CCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCC
Q 014285 272 D------MG-VIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLA 336 (427)
Q Consensus 272 ~------~~-l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~ 336 (427)
- .| .|=.|-.+| .-|++-++++++ .+++|+.+.= |-...++++++++.+ +.=||+.-.
T Consensus 169 vD~LAvaiGt~HG~y~~~p--~Ld~~~L~~I~~----~~~iPLVlHGgSG~~~e~~~kai~~G-i~KiNi~T~ 234 (284)
T PRK12737 169 IDSLAVAIGTAHGLYKGEP--KLDFERLAEIRE----KVSIPLVLHGASGVPDEDVKKAISLG-ICKVNVATE 234 (284)
T ss_pred CCEEeeccCccccccCCCC--cCCHHHHHHHHH----HhCCCEEEeCCCCCCHHHHHHHHHCC-CeEEEeCcH
Confidence 1 11 121244555 458888999976 5789987754 667778899998876 444666543
|
|
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.81 E-value=21 Score=33.85 Aligned_cols=153 Identities=16% Similarity=0.182 Sum_probs=94.9
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhC-CC-cEEEEeCCC-------CC------
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH-PH-CSFILDANE-------GY------ 258 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~-~~-~~L~vDAN~-------~~------ 258 (427)
||.....++.+.+++. ++...|-. |+-|+..-=.|-++++.+.+.| .+ +.+.+|+-. .|
T Consensus 75 iPltVGGGI~s~eD~~----~ll~aGAD--KVSINsaAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~g 148 (256)
T COG0107 75 IPLTVGGGIRSVEDAR----KLLRAGAD--KVSINSAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHG 148 (256)
T ss_pred eeeEecCCcCCHHHHH----HHHHcCCC--eeeeChhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecC
Confidence 5655556677877764 44556644 5555433335667888888764 44 677888743 33
Q ss_pred ----CHHHHHHHHHHhhhCCCCCceEeCCCCC------CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCC
Q 014285 259 ----TSEEAVEVLGKLNDMGVIPVLFEQPVHR------DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLA 328 (427)
Q Consensus 259 ----s~~~A~~~l~~L~~~~l~~~~iEqP~~~------~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~ 328 (427)
+--++++|+++.++.+-- +-+=--+.. -|++..+.++. ...+|+.+.=-.-++.++.+++....+
T Consensus 149 Gr~~t~~d~~~Wa~~~e~~GAG-EIlLtsmD~DGtk~GyDl~l~~~v~~----~v~iPvIASGGaG~~ehf~eaf~~~~a 223 (256)
T COG0107 149 GREDTGLDAVEWAKEVEELGAG-EILLTSMDRDGTKAGYDLELTRAVRE----AVNIPVIASGGAGKPEHFVEAFTEGKA 223 (256)
T ss_pred CCcCCCcCHHHHHHHHHHcCCc-eEEEeeecccccccCcCHHHHHHHHH----hCCCCEEecCCCCcHHHHHHHHHhcCc
Confidence 235688999999987642 222222222 25566666664 789999988888899999888877766
Q ss_pred cEEEeCCCCc-cHHHHHHHHHHHHHcCCcE
Q 014285 329 SVVNIKLAKF-GVLGTLQIIKATRKSGLHL 357 (427)
Q Consensus 329 ~~i~lk~~~~-Gi~~~~~~~~~A~~~gi~~ 357 (427)
|...----.+ |.....++-++..++|+++
T Consensus 224 dAaLAAsiFH~~~~~i~evK~yL~~~gi~V 253 (256)
T COG0107 224 DAALAASIFHFGEITIGEVKEYLAEQGIEV 253 (256)
T ss_pred cHHHhhhhhhcCcccHHHHHHHHHHcCCCc
Confidence 6533222222 4333455566677788775
|
|
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=81.78 E-value=22 Score=34.74 Aligned_cols=117 Identities=11% Similarity=0.114 Sum_probs=75.3
Q ss_pred HHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHh----CC--CcEEE-E-eC-------CCCC-CHHHHHHHHHHhhh--
Q 014285 212 ASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV----HP--HCSFI-L-DA-------NEGY-TSEEAVEVLGKLND-- 272 (427)
Q Consensus 212 ~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~----~~--~~~L~-v-DA-------N~~~-s~~~A~~~l~~L~~-- 272 (427)
+++.++.||+.+-+.-.. ++++.++..+.+.+. += +.+|. | .. ...| +|++|.+|++...-
T Consensus 90 i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~ 169 (283)
T PRK07998 90 VKQAVRAGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDM 169 (283)
T ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCe
Confidence 334568899999997654 678888888877762 21 22321 1 11 1124 69999999986531
Q ss_pred ----CC-CCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCC
Q 014285 273 ----MG-VIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLA 336 (427)
Q Consensus 273 ----~~-l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~ 336 (427)
+| .|=.|-. +.-|++.++++++ .+++|+.+.= |-.+.++++++++.+ +.=||+.-.
T Consensus 170 LAvaiGt~HG~Y~~---p~l~~~~l~~I~~----~~~vPLVlHGgSG~~~e~~~~ai~~G-i~KiNi~Te 231 (283)
T PRK07998 170 LAVSIGNVHGLEDI---PRIDIPLLKRIAE----VSPVPLVIHGGSGIPPEILRSFVNYK-VAKVNIASD 231 (283)
T ss_pred eehhccccccCCCC---CCcCHHHHHHHHh----hCCCCEEEeCCCCCCHHHHHHHHHcC-CcEEEECHH
Confidence 11 1211322 5568899999976 6799987754 667778899999877 444666544
|
|
| >cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases | Back alignment and domain information |
|---|
Probab=81.69 E-value=40 Score=31.40 Aligned_cols=110 Identities=20% Similarity=0.192 Sum_probs=79.4
Q ss_pred HHHHHHHHhC-CCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCC
Q 014285 236 DVLQAIHAVH-PHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCR 314 (427)
Q Consensus 236 ~~l~~ir~~~-~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~ 314 (427)
+.++.+++.. ..+.+-|+ +.+.++.++.++.|.+..-. .+||=|....-++.+++|.+ .++++... .++
T Consensus 41 ~~~~~i~~~~~~~v~~qv~---~~~~e~~i~~a~~l~~~~~~-~~iKIP~T~~gl~ai~~L~~-----~gi~v~~T-~V~ 110 (211)
T cd00956 41 AVLKEICEIIDGPVSAQVV---STDAEGMVAEARKLASLGGN-VVVKIPVTEDGLKAIKKLSE-----EGIKTNVT-AIF 110 (211)
T ss_pred HHHHHHHHhcCCCEEEEEE---eCCHHHHHHHHHHHHHhCCC-EEEEEcCcHhHHHHHHHHHH-----cCCceeeE-Eec
Confidence 4567777743 34555565 46788888888888766212 48999998655556666653 47777654 478
Q ss_pred CHHHHHHHHHcCCCcEEEeCCCCc------cHHHHHHHHHHHHHcCCc
Q 014285 315 SLNDVQKVMQENLASVVNIKLAKF------GVLGTLQIIKATRKSGLH 356 (427)
Q Consensus 315 ~~~~~~~ll~~~a~~~i~lk~~~~------Gi~~~~~~~~~A~~~gi~ 356 (427)
+..+.....+.+ ++|+.|-.+++ |+.-..++.++++++|++
T Consensus 111 s~~Qa~~Aa~AG-A~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~ 157 (211)
T cd00956 111 SAAQALLAAKAG-ATYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFD 157 (211)
T ss_pred CHHHHHHHHHcC-CCEEEEecChHhhcCCCHHHHHHHHHHHHHHcCCC
Confidence 888888888876 78999988773 366678999999999987
|
FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase. |
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=81.54 E-value=13 Score=36.30 Aligned_cols=57 Identities=14% Similarity=0.222 Sum_probs=47.5
Q ss_pred cccCCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCCCcc----HHHHHHHHHHHHHcCCcEE
Q 014285 301 DTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 301 ~~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (427)
++.++||++.= ...+.+.+.+.++.+ ++.|.+|-|..= +..+++++++|+++|+.+-
T Consensus 69 ~~~~VPValHLDHg~~~e~i~~ai~~G-FtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VE 130 (282)
T TIGR01858 69 TTYNMPLALHLDHHESLDDIRQKVHAG-VRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVE 130 (282)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 36789999874 456778889999986 899999999873 7779999999999999873
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=81.51 E-value=59 Score=32.75 Aligned_cols=152 Identities=23% Similarity=0.264 Sum_probs=99.3
Q ss_pred ceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC----------------CchhhHHHHHHHHHh-C-C-CcEEEEe
Q 014285 193 SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAV-H-P-HCSFILD 253 (427)
Q Consensus 193 ~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~----------------~~~~d~~~l~~ir~~-~-~-~~~L~vD 253 (427)
.-|+-..++.+|++.+.+.++-....+ +.|-+..|- +++---+.++++++. . | .+++|+=
T Consensus 73 D~PLIvQf~~ndp~~ll~Aa~lv~~y~-D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~ 151 (358)
T KOG2335|consen 73 DRPLIVQFGGNDPENLLKAARLVQPYC-DGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIF 151 (358)
T ss_pred CCceEEEEcCCCHHHHHHHHHHhhhhc-CcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEec
Confidence 345556778889999877665554445 667776662 122224456777763 2 3 3444442
Q ss_pred CCCCCCHHHHHHHHHHhhhCCCCCceE-------eCC---CCCCChhhHHHHHHhhccccC-CeEEecCCCCCHHHHHHH
Q 014285 254 ANEGYTSEEAVEVLGKLNDMGVIPVLF-------EQP---VHRDDWSGLHDVSNFARDTYG-ISVVADESCRSLNDVQKV 322 (427)
Q Consensus 254 AN~~~s~~~A~~~l~~L~~~~l~~~~i-------EqP---~~~~d~~~~~~L~~~~r~~~~-iPIa~dE~~~~~~~~~~l 322 (427)
-+.++..++++.+++.+.. |+ ||= ..+-||+.++.+.+ ..+ +||.+.=++.++.|..+.
T Consensus 152 ----~d~~kTvd~ak~~e~aG~~--~ltVHGRtr~~kg~~~~pad~~~i~~v~~----~~~~ipviaNGnI~~~~d~~~~ 221 (358)
T KOG2335|consen 152 ----VDLEKTVDYAKMLEDAGVS--LLTVHGRTREQKGLKTGPADWEAIKAVRE----NVPDIPVIANGNILSLEDVERC 221 (358)
T ss_pred ----CcHHHHHHHHHHHHhCCCc--EEEEecccHHhcCCCCCCcCHHHHHHHHH----hCcCCcEEeeCCcCcHHHHHHH
Confidence 3467778888888887754 33 222 45568999999976 455 999999999999999999
Q ss_pred HHcCCCcEEEe------CCCCc-----cH--H-HHHHHHHHHHHcCC
Q 014285 323 MQENLASVVNI------KLAKF-----GV--L-GTLQIIKATRKSGL 355 (427)
Q Consensus 323 l~~~a~~~i~l------k~~~~-----Gi--~-~~~~~~~~A~~~gi 355 (427)
++.-.+|.|.. .|... +. . -..++..+|++++-
T Consensus 222 ~~~tG~dGVM~arglL~NPa~F~~~~~~~~~~~~~~~~l~~~~e~~g 268 (358)
T KOG2335|consen 222 LKYTGADGVMSARGLLYNPALFLTAGYGPTPWGCVEEYLDIAREFGG 268 (358)
T ss_pred HHHhCCceEEecchhhcCchhhccCCCCCCHHHHHHHHHHHHHHcCC
Confidence 98556776653 22221 21 1 24678889999883
|
|
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=81.49 E-value=14 Score=36.32 Aligned_cols=56 Identities=18% Similarity=0.184 Sum_probs=45.9
Q ss_pred cccCCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCCCcc----HHHHHHHHHHHHHcCCcE
Q 014285 301 DTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHL 357 (427)
Q Consensus 301 ~~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~~~G----i~~~~~~~~~A~~~gi~~ 357 (427)
++.++||++.= ...+...++++++.+ ++.|++|-+..- +..++++.++|+.+|+.+
T Consensus 71 ~~~~vpV~lHlDH~~~~e~i~~Ai~~G-ftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~V 131 (286)
T PRK06801 71 ARHDIPVVLNLDHGLHFEAVVRALRLG-FSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSV 131 (286)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHhC-CcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 36788998864 455777789999875 899999998762 667899999999999987
|
|
| >PRK09234 fbiC FO synthase; Reviewed | Back alignment and domain information |
|---|
Probab=80.96 E-value=9.8 Score=42.98 Aligned_cols=126 Identities=15% Similarity=0.129 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCCchhh----HHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCce
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRNITAD----FDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVL 279 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d----~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~ 279 (427)
+++++.+.+++..+.|.+.|-+--|.+++.+ .+.+++|++.+|++.+- +||+.|-... ....++.
T Consensus 558 s~eeI~~~a~ea~~~G~tev~i~gG~~p~~~~~~y~~lir~IK~~~p~i~i~-----afsp~Ei~~~---a~~~Gl~--- 626 (843)
T PRK09234 558 SLDEVADRAWEAWVAGATEVCMQGGIHPELPGTGYADLVRAVKARVPSMHVH-----AFSPMEIVNG---AARLGLS--- 626 (843)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCcCHHHHHHHHHHHHHhCCCeeEE-----ecChHHHHHH---HHHcCCC---
Confidence 7889999999999999999999877654333 34578888888877663 4666553322 2222321
Q ss_pred EeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCccHHHHHHHHHHHHHcCCcEEE
Q 014285 280 FEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMI 359 (427)
Q Consensus 280 iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~~ 359 (427)
+ -+.+++|++. .-..+|-. .+++.+. +++ -++.|.++....++++++.|++.|+++.-
T Consensus 627 ~--------~e~l~~LkeA--GLds~pgt-~aeil~d-~vr----------~~i~p~k~~~~~wle~i~~Ah~lGi~~~s 684 (843)
T PRK09234 627 I--------REWLTALREA--GLDTIPGT-AAEILDD-EVR----------WVLTKGKLPTAEWIEVVTTAHEVGLRSSS 684 (843)
T ss_pred H--------HHHHHHHHHh--CcCccCCC-chhhCCH-HHH----------hhcCCCCCCHHHHHHHHHHHHHcCCCccc
Confidence 1 1344555431 11234421 2222221 222 12445565555778999999999999865
Q ss_pred ccc
Q 014285 360 DGM 362 (427)
Q Consensus 360 ~s~ 362 (427)
+.+
T Consensus 685 tmm 687 (843)
T PRK09234 685 TMM 687 (843)
T ss_pred ceE
Confidence 543
|
|
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=80.71 E-value=30 Score=33.42 Aligned_cols=134 Identities=15% Similarity=0.012 Sum_probs=80.9
Q ss_pred HHHHHHhhcCCcEEEEeccC--CchhhHHHHHHHHHhC-C-CcEEEEeCC---C-------CCC---HHHHHHHHHHhhh
Q 014285 210 ELASKYCKLGFSTLKLNVGR--NITADFDVLQAIHAVH-P-HCSFILDAN---E-------GYT---SEEAVEVLGKLND 272 (427)
Q Consensus 210 ~~~~~~~~~Gf~~iKlKiG~--~~~~d~~~l~~ir~~~-~-~~~L~vDAN---~-------~~s---~~~A~~~l~~L~~ 272 (427)
+.++++.+.|...+=+---. +.+-|.+.++.+-+.+ + .+.+.+|+. + +|. .-++.+++.++.+
T Consensus 95 e~i~~~l~~Ga~rViigT~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~ 174 (262)
T PLN02446 95 ENAMSYLDAGASHVIVTSYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLA 174 (262)
T ss_pred HHHHHHHHcCCCEEEEchHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHH
Confidence 45677889998766553211 2223478888888764 5 488899985 4 231 1233444444444
Q ss_pred CCCCCceEeCC------CCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcC--CCcEEEeCCC--Ccc---
Q 014285 273 MGVIPVLFEQP------VHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQEN--LASVVNIKLA--KFG--- 339 (427)
Q Consensus 273 ~~l~~~~iEqP------~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~--a~~~i~lk~~--~~G--- 339 (427)
.++. ..|=.= +.--|++.++++++ .+.+||.+.=-+.+..|++++.+.+ ...++.=|.- .-|
T Consensus 175 ~g~~-eii~TdI~rDGtl~G~d~el~~~l~~----~~~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl~~y~g~~~ 249 (262)
T PLN02446 175 AYCD-EFLVHGVDVEGKRLGIDEELVALLGE----HSPIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSALDIFGGNLP 249 (262)
T ss_pred hCCC-EEEEEEEcCCCcccCCCHHHHHHHHh----hCCCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeHHHhCCCcc
Confidence 3332 222222 22336778888886 6889998887889999999888764 3444444544 346
Q ss_pred HHHHHHHHH
Q 014285 340 VLGTLQIIK 348 (427)
Q Consensus 340 i~~~~~~~~ 348 (427)
+.++++|-+
T Consensus 250 l~ea~~~~~ 258 (262)
T PLN02446 250 YDDVVAWHK 258 (262)
T ss_pred HHHHHHHHh
Confidence 445666643
|
|
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=80.46 E-value=52 Score=30.99 Aligned_cols=142 Identities=13% Similarity=0.154 Sum_probs=98.5
Q ss_pred ecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHH----hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCC
Q 014285 200 IPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHA----VHPHCSFILDANEGYTSEEAVEVLGKLNDMGV 275 (427)
Q Consensus 200 i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~----~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l 275 (427)
+...++++..+.++.+.+.|++++-+-.-. ..-.+.++.+++ .+| ++.|=|-.-.|++++.+.++ .|.
T Consensus 21 vr~~~~~~a~~~~~al~~gGi~~iEiT~~t--p~a~~~i~~l~~~~~~~~p--~~~vGaGTVl~~e~a~~a~~----aGA 92 (222)
T PRK07114 21 FYHADVEVAKKVIKACYDGGARVFEFTNRG--DFAHEVFAELVKYAAKELP--GMILGVGSIVDAATAALYIQ----LGA 92 (222)
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEeCCC--CcHHHHHHHHHHHHHhhCC--CeEEeeEeCcCHHHHHHHHH----cCC
Confidence 334688999999999999999999998853 234455666653 345 47788888899998766544 454
Q ss_pred CCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCc-cHHHHHHHHHHHHHcC
Q 014285 276 IPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSG 354 (427)
Q Consensus 276 ~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~-Gi~~~~~~~~~A~~~g 354 (427)
. ||=-|.-. .++.+.|+ +.++|+.-| +.|+.++.++++.+ ++++-+=|.-. |..-...+..-- -+
T Consensus 93 ~--FiVsP~~~---~~v~~~~~----~~~i~~iPG--~~TpsEi~~A~~~G-a~~vKlFPA~~~G~~~ikal~~p~--p~ 158 (222)
T PRK07114 93 N--FIVTPLFN---PDIAKVCN----RRKVPYSPG--CGSLSEIGYAEELG-CEIVKLFPGSVYGPGFVKAIKGPM--PW 158 (222)
T ss_pred C--EEECCCCC---HHHHHHHH----HcCCCEeCC--CCCHHHHHHHHHCC-CCEEEECcccccCHHHHHHHhccC--CC
Confidence 3 77777653 34455554 578888876 67999999999986 68888888655 544333322222 47
Q ss_pred CcEEEcccC
Q 014285 355 LHLMIDGMI 363 (427)
Q Consensus 355 i~~~~~s~~ 363 (427)
+++++++-+
T Consensus 159 i~~~ptGGV 167 (222)
T PRK07114 159 TKIMPTGGV 167 (222)
T ss_pred CeEEeCCCC
Confidence 889998744
|
|
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=80.14 E-value=31 Score=32.58 Aligned_cols=126 Identities=21% Similarity=0.176 Sum_probs=78.9
Q ss_pred eeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCC--CcEEEEeCCCC--------CCHHHHH
Q 014285 195 STAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHP--HCSFILDANEG--------YTSEEAV 264 (427)
Q Consensus 195 p~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~--~~~L~vDAN~~--------~s~~~A~ 264 (427)
|+-...++.+.++ ++++.+.|.. |+=+|...-.+ +.++.+-+.++ .+-+.+|+... .++.+.+
T Consensus 80 ~v~vgGGir~~ed----v~~~l~~Ga~--~viigt~~~~~-~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~ 152 (233)
T cd04723 80 GLWVDGGIRSLEN----AQEWLKRGAS--RVIVGTETLPS-DDDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELL 152 (233)
T ss_pred CEEEecCcCCHHH----HHHHHHcCCC--eEEEcceeccc-hHHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHH
Confidence 3334445566554 4456677743 44456544456 77877777654 58899999665 4577766
Q ss_pred HHHHHhhhCCCCCceEeC--CCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEe
Q 014285 265 EVLGKLNDMGVIPVLFEQ--PVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (427)
Q Consensus 265 ~~l~~L~~~~l~~~~iEq--P~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~l 333 (427)
+.++.. --.++..-+.. -....|++.++++++ .+.+||..+=-+.+..+++++++.+ ++.+.+
T Consensus 153 ~~~~~~-~~~li~~di~~~G~~~g~~~~~~~~i~~----~~~ipvi~~GGi~s~edi~~l~~~G-~~~viv 217 (233)
T cd04723 153 RRLAKW-PEELIVLDIDRVGSGQGPDLELLERLAA----RADIPVIAAGGVRSVEDLELLKKLG-ASGALV 217 (233)
T ss_pred HHHHHh-CCeEEEEEcCccccCCCcCHHHHHHHHH----hcCCCEEEeCCCCCHHHHHHHHHcC-CCEEEE
Confidence 666655 22222112211 112335677788875 5789998888899999999999876 555554
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=80.07 E-value=84 Score=33.11 Aligned_cols=164 Identities=16% Similarity=0.238 Sum_probs=98.9
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCCc--------hhhHHHHHHHHHhCCCcEEEE--eC-C-CCC--CHHHHH-HHHH
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRNI--------TADFDVLQAIHAVHPHCSFIL--DA-N-EGY--TSEEAV-EVLG 268 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~~--------~~d~~~l~~ir~~~~~~~L~v--DA-N-~~~--s~~~A~-~~l~ 268 (427)
+.+++.+.++.+.+.||..|-+--|..+ +.+.++++.+++..++..+.. =+ | -+| -+++.+ .+++
T Consensus 23 ~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~fv~ 102 (467)
T PRK14041 23 RTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELFVK 102 (467)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHHHH
Confidence 5788888899998999999999544322 357889999999877777754 22 3 244 245533 4566
Q ss_pred HhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCC-----CCCHHHH----HHHHHcCCCcEEEeCCCC-c
Q 014285 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADES-----CRSLNDV----QKVMQENLASVVNIKLAK-F 338 (427)
Q Consensus 269 ~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~-----~~~~~~~----~~ll~~~a~~~i~lk~~~-~ 338 (427)
...+.++...-|=.|+. |.+.+....+.++ +.+.-+...++ .++...+ +++.+.+ +|.|.++=+- +
T Consensus 103 ~A~~~Gvd~irif~~ln--d~~n~~~~i~~ak-~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~G-ad~I~i~Dt~G~ 178 (467)
T PRK14041 103 KVAEYGLDIIRIFDALN--DIRNLEKSIEVAK-KHGAHVQGAISYTVSPVHTLEYYLEFARELVDMG-VDSICIKDMAGL 178 (467)
T ss_pred HHHHCCcCEEEEEEeCC--HHHHHHHHHHHHH-HCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC-CCEEEECCccCC
Confidence 66666765445555554 4555544433332 34555543332 2333333 4455554 7888876554 2
Q ss_pred c-HHHHHHHHHHHH-HcCCcEEEcccCchhHHHHH
Q 014285 339 G-VLGTLQIIKATR-KSGLHLMIDGMIETRLATGF 371 (427)
Q Consensus 339 G-i~~~~~~~~~A~-~~gi~~~~~s~~es~ig~~a 371 (427)
. ...+.+++...+ +.++++.+|+-...|++.+.
T Consensus 179 l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN 213 (467)
T PRK14041 179 LTPKRAYELVKALKKKFGVPVEVHSHCTTGLASLA 213 (467)
T ss_pred cCHHHHHHHHHHHHHhcCCceEEEecCCCCcHHHH
Confidence 2 445666665554 45899999986666655543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 427 | ||||
| 3u9i_A | 393 | The Crystal Structure Of Mandelate RacemaseMUCONATE | 8e-46 | ||
| 3ik4_A | 365 | Crystal Structure Of Mandelate RacemaseMUCONATE LAC | 1e-45 | ||
| 3s5s_A | 389 | Crystal Structure Of Putative Mandelate RacemaseMUC | 3e-45 | ||
| 1jpm_A | 366 | L-ala-d/l-glu Epimerase Length = 366 | 1e-41 | ||
| 3dfy_A | 345 | Crystal Structure Of Apo Dipeptide Epimerase From T | 1e-37 | ||
| 2zad_A | 345 | Crystal Structure Of Muconate Cycloisomerase From T | 2e-35 | ||
| 3jva_A | 354 | Crystal Structure Of Dipeptide Epimerase From Enter | 2e-25 | ||
| 3q45_A | 368 | Crystal Structure Of Dipeptide Epimerase From Cytop | 2e-22 | ||
| 3r0k_A | 379 | Crystal Structure Of Nysgrc Enolase Target 200555, | 7e-18 | ||
| 2p88_A | 369 | Crystal Structure Of N-succinyl Arg/lys Racemase Fr | 3e-16 | ||
| 3iji_A | 338 | Structure Of Dipeptide Epimerase From Bacteroides T | 4e-15 | ||
| 2zc8_A | 369 | Crystal Structure Of N-Acylamino Acid Racemase From | 2e-14 | ||
| 3eez_A | 378 | Crystal Structure Of A Putative Mandelate RacemaseM | 1e-12 | ||
| 3rit_A | 356 | Crystal Structure Of Dipeptide Epimerase From Methy | 3e-12 | ||
| 1jpd_X | 324 | L-Ala-DL-Glu Epimerase Length = 324 | 5e-12 | ||
| 1wuf_A | 393 | Crystal Structure Of Protein Gi:16801725, Member Of | 1e-11 | ||
| 2ggg_A | 375 | The Mutant A68c-D72c Of Deinococcus Radiodurans N-A | 1e-11 | ||
| 2fkp_A | 375 | The Mutant G127c-T313c Of Deinococcus Radiodurans N | 1e-11 | ||
| 3i4k_A | 383 | Crystal Structure Of Muconate Lactonizing Enzyme Fr | 2e-11 | ||
| 1r0m_A | 375 | Structure Of Deinococcus Radiodurans N-Acylamino Ac | 2e-11 | ||
| 3dg3_A | 367 | Crystal Structure Of Muconate Lactonizing Enzyme Fr | 3e-11 | ||
| 2ggj_A | 375 | The Mutant Y218c Of Deinococcus Radiodurans N-Acyla | 4e-11 | ||
| 2ggi_A | 375 | The Mutant E149c-A182c Of Deinococcus Radiodurans N | 6e-11 | ||
| 3ct2_A | 382 | Crystal Structure Of Muconate Cycloisomerase From P | 1e-10 | ||
| 3fcp_A | 381 | Crystal Structure Of Muconate Lactonizing Enzyme Fr | 2e-10 | ||
| 3muc_A | 369 | Muconate Cycloisomerase Variant I54v Length = 369 | 2e-10 | ||
| 1muc_A | 373 | Structure Of Muconate Lactonizing Enzyme At 1.85 An | 3e-10 | ||
| 2muc_A | 373 | Muconate Cycloisomerase Variant F329i Length = 373 | 3e-10 | ||
| 1bkh_A | 369 | Muconate Lactonizing Enzyme From Pseudomonas Putida | 3e-10 | ||
| 1nu5_A | 370 | Crystal Structure Of Pseudomonas Sp. P51 Chloromuco | 4e-10 | ||
| 3qld_A | 388 | Structure Of Probable Mandelate Racemase (Aalaa1dra | 7e-10 | ||
| 3i6t_A | 381 | Crystal Structure Of Muconate Cycloisomerase From J | 9e-10 | ||
| 3ugv_A | 390 | Crystal Structure Of An Enolase From Alpha Pretobac | 1e-09 | ||
| 2chr_A | 370 | A Re-Evaluation Of The Crystal Structure Of Chlorom | 2e-09 | ||
| 2qde_A | 397 | Crystal Structure Of Mandelate RacemaseMUCONATE LAC | 2e-09 | ||
| 1f9c_A | 372 | Crystal Structure Of Mle D178n Variant Length = 372 | 3e-09 | ||
| 2qdd_A | 378 | Crystal Structure Of A Member Of Enolase Superfamil | 7e-09 | ||
| 2pgw_A | 384 | Crystal Structure Of A Putative Muconate Cycloisome | 7e-09 | ||
| 4gfi_A | 329 | Crystal Structure Of Efi-502318, An Enolase Family | 1e-08 | ||
| 3i6e_A | 385 | Crystal Structure Of Muconate Lactonizing Enzyme Fr | 2e-08 | ||
| 3my9_A | 377 | Crystal Structure Of A Muconate Cycloisomerase From | 3e-08 | ||
| 4h2h_A | 376 | Crystal Structure Of An Enolase (Mandalate Racemase | 4e-08 | ||
| 4h1z_A | 412 | Crystal Structure Of Putative Isomerase From Sinorh | 4e-08 | ||
| 3t8q_A | 370 | Crystal Structure Of Mandelate RacemaseMUCONATE LAC | 8e-08 | ||
| 3ddm_A | 392 | Crystal Structure Of Mandelate RacemaseMUCONATE Lac | 2e-07 | ||
| 2ppg_A | 399 | Crystal Structure Of Putative Isomerase From Sinorh | 3e-07 | ||
| 3bjs_A | 428 | Crystal Structure Of A Member Of Enolase Superfamil | 5e-07 | ||
| 2pmq_A | 377 | Crystal Structure Of A Mandelate RacemaseMUCONATE L | 1e-06 | ||
| 4h83_A | 388 | Crystal Structure Of Mandelate RacemaseMUCONATE LAC | 2e-06 | ||
| 2rdx_A | 379 | Crystal Structure Of Mandelate RacemaseMUCONATE LAC | 2e-06 | ||
| 3tcs_A | 388 | Crystal Structure Of A Putative Racemase From Roseo | 2e-06 | ||
| 3ozm_A | 389 | Crystal Structure Of Enolase Superfamily Member Fro | 2e-06 | ||
| 3h12_A | 397 | Crystal Structure Of Putative Mandelate Racemase Fr | 2e-06 | ||
| 3msy_A | 379 | Crystal Structure Of Mandelate RacemaseMUCONATE LAC | 3e-06 | ||
| 3no1_A | 398 | Crystal Structure Of Mandelate Racemase/muconate La | 4e-06 | ||
| 4ggb_A | 378 | Crystal Structure Of A Proposed Galactarolactone Cy | 5e-06 | ||
| 2nql_A | 388 | Crystal Structure Of A Member Of The Enolase Superf | 1e-05 | ||
| 4a35_A | 441 | Crystal Structure Of Human Mitochondrial Enolase Su | 1e-05 | ||
| 4dn1_A | 408 | Crystal Structure Of An Enolase (Mandelate Racemase | 1e-05 | ||
| 3op2_A | 397 | Crystal Structure Of Putative Mandelate Racemase Fr | 1e-05 | ||
| 2hzg_A | 401 | Crystal Stucture Of Predicted Mandelate Racemase Fr | 2e-05 | ||
| 3t9p_A | 388 | Crystal Structure Of A Putative Mandelate RacemaseM | 3e-05 | ||
| 2opj_A | 327 | Crystal Structure Of O-Succinylbenzoate Synthase Le | 7e-05 | ||
| 2oz8_A | 389 | Crystal Structure Of Putative Mandelate Racemase Fr | 8e-05 | ||
| 1wue_A | 386 | Crystal Structure Of Protein Gi:29375081, Unknown M | 1e-04 | ||
| 2ovl_A | 371 | Crystal Structure Of A Racemase From Streptomyces C | 1e-04 | ||
| 3rr1_A | 405 | Crystal Structure Of Enolase Prk14017 (Target Efi-5 | 3e-04 |
| >pdb|3U9I|A Chain A, The Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING Enzyme From Roseiflexus Sp. Length = 393 | Back alignment and structure |
|
| >pdb|3IK4|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING PROTEIN From Herpetosiphon Aurantiacus Length = 365 | Back alignment and structure |
|
| >pdb|3S5S|A Chain A, Crystal Structure Of Putative Mandelate RacemaseMUCONATE LACTONIZING Enzyme (PsiCOM TARGET 200551) FROM SORANGIUM CELLULOSUM Length = 389 | Back alignment and structure |
|
| >pdb|1JPM|A Chain A, L-ala-d/l-glu Epimerase Length = 366 | Back alignment and structure |
|
| >pdb|3DFY|A Chain A, Crystal Structure Of Apo Dipeptide Epimerase From Thermotoga Maritima Length = 345 | Back alignment and structure |
|
| >pdb|2ZAD|A Chain A, Crystal Structure Of Muconate Cycloisomerase From Thermotoga Maritima Msb8 Length = 345 | Back alignment and structure |
|
| >pdb|3JVA|A Chain A, Crystal Structure Of Dipeptide Epimerase From Enterococcus Faecalis V583 Length = 354 | Back alignment and structure |
|
| >pdb|3Q45|A Chain A, Crystal Structure Of Dipeptide Epimerase From Cytophaga Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val Length = 368 | Back alignment and structure |
|
| >pdb|3R0K|A Chain A, Crystal Structure Of Nysgrc Enolase Target 200555, A Putative Dipeptide Epimerase From Francisella Philomiragia : Tartrate Bound, No Mg Length = 379 | Back alignment and structure |
|
| >pdb|2P88|A Chain A, Crystal Structure Of N-succinyl Arg/lys Racemase From Bacillus Cereus Atcc 14579 Length = 369 | Back alignment and structure |
|
| >pdb|3IJI|A Chain A, Structure Of Dipeptide Epimerase From Bacteroides Thetaiotaomicron Complexed With L-Ala-D-Glu; Nonproductive Substrate Binding. Length = 338 | Back alignment and structure |
|
| >pdb|2ZC8|A Chain A, Crystal Structure Of N-Acylamino Acid Racemase From Thermus Thermophilus Hb8 Length = 369 | Back alignment and structure |
|
| >pdb|3EEZ|A Chain A, Crystal Structure Of A Putative Mandelate RacemaseMUCONATE Lactonizing Enzyme From Silicibacter Pomeroyi Length = 378 | Back alignment and structure |
|
| >pdb|3RIT|A Chain A, Crystal Structure Of Dipeptide Epimerase From Methylococcus Capsulatus Complexed With Mg And Dipeptide L-Arg-D-Lys Length = 356 | Back alignment and structure |
|
| >pdb|1JPD|X Chain X, L-Ala-DL-Glu Epimerase Length = 324 | Back alignment and structure |
|
| >pdb|1WUF|A Chain A, Crystal Structure Of Protein Gi:16801725, Member Of Enolase Superfamily From Listeria Innocua Clip11262 Length = 393 | Back alignment and structure |
|
| >pdb|2GGG|A Chain A, The Mutant A68c-D72c Of Deinococcus Radiodurans N-Acylamino Acid Racemase Length = 375 | Back alignment and structure |
|
| >pdb|2FKP|A Chain A, The Mutant G127c-T313c Of Deinococcus Radiodurans N- Acylamino Acid Racemase Length = 375 | Back alignment and structure |
|
| >pdb|3I4K|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From Corynebacterium Glutamicum Length = 383 | Back alignment and structure |
|
| >pdb|1R0M|A Chain A, Structure Of Deinococcus Radiodurans N-Acylamino Acid Racemase At 1.3 : Insights Into A Flexible Binding Pocket And Evolution Of Enzymatic Activity Length = 375 | Back alignment and structure |
|
| >pdb|3DG3|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From Mucobacterium Smegmatis Length = 367 | Back alignment and structure |
|
| >pdb|2GGJ|A Chain A, The Mutant Y218c Of Deinococcus Radiodurans N-Acylamino Acid Racemase Length = 375 | Back alignment and structure |
|
| >pdb|2GGI|A Chain A, The Mutant E149c-A182c Of Deinococcus Radiodurans N- Acylamino Acid Racemase Length = 375 | Back alignment and structure |
|
| >pdb|3CT2|A Chain A, Crystal Structure Of Muconate Cycloisomerase From Pseudomonas Fluorescens Length = 382 | Back alignment and structure |
|
| >pdb|3FCP|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From Klebsiella Pneumoniae Length = 381 | Back alignment and structure |
|
| >pdb|3MUC|A Chain A, Muconate Cycloisomerase Variant I54v Length = 369 | Back alignment and structure |
|
| >pdb|1MUC|A Chain A, Structure Of Muconate Lactonizing Enzyme At 1.85 Angstroms Resolution Length = 373 | Back alignment and structure |
|
| >pdb|2MUC|A Chain A, Muconate Cycloisomerase Variant F329i Length = 373 | Back alignment and structure |
|
| >pdb|1BKH|A Chain A, Muconate Lactonizing Enzyme From Pseudomonas Putida Length = 369 | Back alignment and structure |
|
| >pdb|1NU5|A Chain A, Crystal Structure Of Pseudomonas Sp. P51 Chloromuconate Lactonizing Enzyme Length = 370 | Back alignment and structure |
|
| >pdb|3QLD|A Chain A, Structure Of Probable Mandelate Racemase (Aalaa1draft_2112) From Alicyclobacillus Acidocaldarius Length = 388 | Back alignment and structure |
|
| >pdb|3I6T|A Chain A, Crystal Structure Of Muconate Cycloisomerase From Jannaschia Sp. Length = 381 | Back alignment and structure |
|
| >pdb|3UGV|A Chain A, Crystal Structure Of An Enolase From Alpha Pretobacterium Bal199 (Efi Target Efi-501650) With Bound Mg Length = 390 | Back alignment and structure |
|
| >pdb|2CHR|A Chain A, A Re-Evaluation Of The Crystal Structure Of Chloromuconate Cycloisomerase Length = 370 | Back alignment and structure |
|
| >pdb|2QDE|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1 Length = 397 | Back alignment and structure |
|
| >pdb|1F9C|A Chain A, Crystal Structure Of Mle D178n Variant Length = 372 | Back alignment and structure |
|
| >pdb|2QDD|A Chain A, Crystal Structure Of A Member Of Enolase Superfamily From Roseovarius Nubinhibens Ism Length = 378 | Back alignment and structure |
|
| >pdb|2PGW|A Chain A, Crystal Structure Of A Putative Muconate Cycloisomerase From Sinorhizobium Meliloti 1021 Length = 384 | Back alignment and structure |
|
| >pdb|4GFI|A Chain A, Crystal Structure Of Efi-502318, An Enolase Family Member From Agrobacterium Tumefaciens With Homology To Dipeptide Epimerases (Bound Sodium, L-Ala-L-Glu With Ordered Loop) Length = 329 | Back alignment and structure |
|
| >pdb|3I6E|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From Ruegeria Pomeroyi. Length = 385 | Back alignment and structure |
|
| >pdb|3MY9|A Chain A, Crystal Structure Of A Muconate Cycloisomerase From Azorhizobium Caulinodans Length = 377 | Back alignment and structure |
|
| >pdb|4H2H|A Chain A, Crystal Structure Of An Enolase (Mandalate Racemase Subgroup, Target Efi-502101) From Pelagibaca Bermudensis Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine (Betonicine) Length = 376 | Back alignment and structure |
|
| >pdb|4H1Z|A Chain A, Crystal Structure Of Putative Isomerase From Sinorhizobium Meliloti, Open Loop Conformation (Target Efi-502104) Length = 412 | Back alignment and structure |
|
| >pdb|3T8Q|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING ENZYME Family Protein From Hoeflea Phototrophica Length = 370 | Back alignment and structure |
|
| >pdb|3DDM|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE Lactonizing Enzyme From Bordetella Bronchiseptica Rb50 Length = 392 | Back alignment and structure |
|
| >pdb|2PPG|A Chain A, Crystal Structure Of Putative Isomerase From Sinorhizobium Meliloti Length = 399 | Back alignment and structure |
|
| >pdb|3BJS|A Chain A, Crystal Structure Of A Member Of Enolase Superfamily From Polaromonas Sp. Js666 Length = 428 | Back alignment and structure |
|
| >pdb|2PMQ|A Chain A, Crystal Structure Of A Mandelate RacemaseMUCONATE LACTONIZING ENZYME From Roseovarius Sp. Htcc2601 Length = 377 | Back alignment and structure |
|
| >pdb|4H83|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING ENZYME (Efi Target:502127) Length = 388 | Back alignment and structure |
|
| >pdb|2RDX|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING ENZYME From Roseovarius Nubinhibens Ism Length = 379 | Back alignment and structure |
|
| >pdb|3TCS|A Chain A, Crystal Structure Of A Putative Racemase From Roseobacter Denitrificans Length = 388 | Back alignment and structure |
|
| >pdb|3OZM|A Chain A, Crystal Structure Of Enolase Superfamily Member From Bordetella Bronchiseptica Complexed With Mg, M-Xylarate And L-Lyxarate Length = 389 | Back alignment and structure |
|
| >pdb|3H12|A Chain A, Crystal Structure Of Putative Mandelate Racemase From Bordetella Bronchiseptica Rb50 Length = 397 | Back alignment and structure |
|
| >pdb|3MSY|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING ENZYME From A Marine Actinobacterium Length = 379 | Back alignment and structure |
|
| >pdb|3NO1|A Chain A, Crystal Structure Of Mandelate Racemase/muconate Lactonizing Enzyme From A Marine Actinobacterium In Complex With Magnesium Length = 398 | Back alignment and structure |
|
| >pdb|4GGB|A Chain A, Crystal Structure Of A Proposed Galactarolactone Cycloisomerase From Agrobacterium Tumefaciens, Target Efi-500704, With Bound Ca, Disordered Loops Length = 378 | Back alignment and structure |
|
| >pdb|2NQL|A Chain A, Crystal Structure Of A Member Of The Enolase Superfamily From Agrobacterium Tumefaciens Length = 388 | Back alignment and structure |
|
| >pdb|4A35|A Chain A, Crystal Structure Of Human Mitochondrial Enolase Superfamily Member 1 (Enosf1) Length = 441 | Back alignment and structure |
|
| >pdb|4DN1|A Chain A, Crystal Structure Of An Enolase (Mandelate Racemase Subgroup Member) From Agrobacterium Tumefaciens (Target Efi-502088) With Bound Mg And Formate Length = 408 | Back alignment and structure |
|
| >pdb|3OP2|A Chain A, Crystal Structure Of Putative Mandelate Racemase From Bordetella Bronchiseptica Rb50 Complexed With 2-OxoglutaratePHOSPHATE Length = 397 | Back alignment and structure |
|
| >pdb|2HZG|A Chain A, Crystal Stucture Of Predicted Mandelate Racemase From Rhodobacter Sphaeroides Length = 401 | Back alignment and structure |
|
| >pdb|3T9P|A Chain A, Crystal Structure Of A Putative Mandelate RacemaseMUCONATE Lactonizing Enzyme Family Protein From Roseovarius Length = 388 | Back alignment and structure |
|
| >pdb|2OPJ|A Chain A, Crystal Structure Of O-Succinylbenzoate Synthase Length = 327 | Back alignment and structure |
|
| >pdb|2OZ8|A Chain A, Crystal Structure Of Putative Mandelate Racemase From Mesorhizobium Loti Length = 389 | Back alignment and structure |
|
| >pdb|1WUE|A Chain A, Crystal Structure Of Protein Gi:29375081, Unknown Member Of Enolase Superfamily From Enterococcus Faecalis V583 Length = 386 | Back alignment and structure |
|
| >pdb|2OVL|A Chain A, Crystal Structure Of A Racemase From Streptomyces Coelicolor A3(2) Length = 371 | Back alignment and structure |
|
| >pdb|3RR1|A Chain A, Crystal Structure Of Enolase Prk14017 (Target Efi-500653) From Ralstonia Pickettii 12j Length = 405 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779} Length = 365 | Back alignment and structure |
|---|
Score = 300 bits (771), Expect = 1e-99
Identities = 116/354 (32%), Positives = 178/354 (50%), Gaps = 8/354 (2%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGD-QTKA 125
+Q +N+ L+ P ++ + NV ++V+L++G +G GE A P V+G+ QT
Sbjct: 7 IQAISAEAINLPLTEPFAIASGAQAVAANVLVKVQLADGTLGLGEAAPFPAVSGETQTGT 66
Query: 126 LVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWR 185
+ L + + + A R G+EMA++DA+ +PL
Sbjct: 67 SAAIERLQSHLLGADVRGWRKLAAMLDHAEHEAAAA--RCGLEMAMLDALTRHYHMPLHV 124
Query: 186 LFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVG-RNITADFDVLQAIHAV 244
FGG S L T +TI A A+ A G ++K+ ++ D L+AIH
Sbjct: 125 FFGGVSKQLETDMTITAGDEVHAAASAKAILARGIKSIKVKTAGVDVAYDLARLRAIHQA 184
Query: 245 HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG 304
P I+D N GY E A+ + VLFEQP+ R+DW+G+ V G
Sbjct: 185 APTAPLIVDGNCGYDVERALAFCAACKAESIPMVLFEQPLPREDWAGMAQV----TAQSG 240
Query: 305 ISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIE 364
+V ADES RS +DV ++ +E ASV+NIKL K GV L++I + +GL LMI GM+E
Sbjct: 241 FAVAADESARSAHDVLRIAREGTASVINIKLMKAGVAEGLKMIAIAQAAGLGLMIGGMVE 300
Query: 365 TRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQG 418
+ LA F+ +LAAG G +++L+TP ++E PF+GG +G + G G
Sbjct: 301 SILAMSFSANLAAGNGGFDFIDLDTPLFIAEHPFIGGFAQTGGTLQLADVAGHG 354
|
| >2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A Length = 345 | Back alignment and structure |
|---|
Score = 297 bits (763), Expect = 1e-98
Identities = 97/348 (27%), Positives = 161/348 (46%), Gaps = 8/348 (2%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL 126
+ + P + S NV + + L +G G+GE + V G++ +AL
Sbjct: 4 IVNVKLSLKRYEYEKPFHITGSVSSESRNVEVEIVLESGVKGYGEASPSFRVNGERVEAL 63
Query: 127 VKVREA-CQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWR 185
+ + A + + + R+ F S++A V+ A +DA++ + +
Sbjct: 64 LAIENAVREMITGIDVRNYARIFEITDRLFG---FPSLKAAVQFATLDALSQELGTQVCY 120
Query: 186 LFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH 245
L GG + + T T+ + + A K + GF +K+ VG N+ D + ++ I V
Sbjct: 121 LLGGKRDEIETDKTVGIDTVENRVKEAKKIFEEGFRVIKIKVGENLKEDIEAVEEIAKVT 180
Query: 246 PHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGI 305
+I+DAN GYT +EAVE + G+ ++EQPV R+D GL V R
Sbjct: 181 RGAKYIVDANMGYTQKEAVEFARAVYQKGIDIAVYEQPVRREDIEGLKFV----RFHSPF 236
Query: 306 SVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIET 365
V ADES R+ DV ++++E VNIKL K G+ L I++ SGL LMI M E+
Sbjct: 237 PVAADESARTKFDVMRLVKEEAVDYVNIKLMKSGISDALAIVEIAESSGLKLMIGCMGES 296
Query: 366 RLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTN 413
L ++H A G G ++ +L++ +L E+ F G G +
Sbjct: 297 SLGINQSVHFALGTGAFEFHDLDSHLMLKEEVFRGKFIQDGPRMRVKD 344
|
| >3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium; 2.40A {Sorangium cellulosum} Length = 389 | Back alignment and structure |
|---|
Score = 298 bits (766), Expect = 1e-98
Identities = 125/355 (35%), Positives = 179/355 (50%), Gaps = 8/355 (2%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGD-QTKA 125
++R L++ L P + + E N+ + VEL++G +G+GE A +P G+ Q +
Sbjct: 7 IRRVSIEALDIPLHEPFGIAGGAQERAANLLVTVELADGTLGFGEAAPLPAFNGETQDGS 66
Query: 126 LVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWR 185
+ + S + G + R +E A++DA+ +PLW
Sbjct: 67 RAAAVSLREAVVGSDARAWRAVARALREASGGG-AGAARCAIETAILDALTKRAGMPLWA 125
Query: 186 LFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRN-ITADFDVLQAIHAV 244
FGG+ +L+T ITI SP A E A + +GF LK+ VG +D ++AIHA
Sbjct: 126 FFGGSGTALTTDITITTGSPERAEEAARRAAAMGFRALKVKVGGRLAASDPARIEAIHAA 185
Query: 245 HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG 304
P S ILD N G T+ EA+ ++ +G L EQPV RDDW G+ +V G
Sbjct: 186 APGASLILDGNGGLTAGEALALVAHARRLGADVALLEQPVPRDDWDGMKEV----TRRAG 241
Query: 305 ISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIE 364
+ V ADES S DV +V E A+VVNIKL K G+ L I R +GL LMI GM+E
Sbjct: 242 VDVAADESAASAEDVLRVAAERAATVVNIKLMKGGIAEALDIAAVARAAGLGLMIGGMVE 301
Query: 365 TRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNAR-GQG 418
+ LA + AAGLG +V+L+TP L+E+PF GG G + R G G
Sbjct: 302 SVLAMTASACFAAGLGGFSFVDLDTPLFLAENPFDGGFVQRGPALSLEGIRAGHG 356
|
| >3u9i_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, PSI-biology; 2.90A {Roseiflexus SP} Length = 393 | Back alignment and structure |
|---|
Score = 296 bits (759), Expect = 2e-97
Identities = 121/379 (31%), Positives = 183/379 (48%), Gaps = 19/379 (5%)
Query: 51 RTSLGFKNLTETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWG 110
+L F+++T ++ L++ L P + + E N+ + VEL++G G+G
Sbjct: 15 TENLYFQSMTAP--TTIRALTVAPLDIPLHEPFGIASGAQEVARNLLVAVELTDGTRGYG 72
Query: 111 EVAVVPLVTGD-QTKALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEM 169
E A P G+ Q A + A + + + + + A R +E
Sbjct: 73 EAAPFPAFNGETQDMAHAAILAARSLVEGADVREWRRIALALPALPGMTGSA--RCAIET 130
Query: 170 ALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVG- 228
A++DA+ +PLW FGGA+ SL T +TI S A+ A G +T+K+ +G
Sbjct: 131 AILDALTRRARLPLWAFFGGAATSLETDVTITTGSVTAAARAAQAIVARGVTTIKIKIGA 190
Query: 229 --------RNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF 280
R + D + AI V P ILD N GYT+ +A+ +L L G++P LF
Sbjct: 191 GDPDATTIRTMEHDLARIVAIRDVAPTARLILDGNCGYTAPDALRLLDMLGVHGIVPALF 250
Query: 281 EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGV 340
EQPV +DD GL + T + V ADES S D ++ + V+NIKL K G+
Sbjct: 251 EQPVAKDDEEGLRRL----TATRRVPVAADESVASATDAARLARNAAVDVLNIKLMKCGI 306
Query: 341 LGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVG 400
+ L I R +GLHLMI GM+E+ LA + AAG G ++V+L+TP L+E+PF G
Sbjct: 307 VEALDIAAIARTAGLHLMIGGMVESLLAMTVSACFAAGQGGFRFVDLDTPLFLAENPFDG 366
Query: 401 GCEVSGAIYNFTNAR-GQG 418
G G + T G G
Sbjct: 367 GMTYHGGTIDLTLIEAGHG 385
|
| >3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A Length = 356 | Back alignment and structure |
|---|
Score = 281 bits (720), Expect = 5e-92
Identities = 90/357 (25%), Positives = 154/357 (43%), Gaps = 13/357 (3%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL 126
+ + R + L+ P + S+E ++N+ + + ++G +G G + VTG+ +A
Sbjct: 3 IADIQVRTEHFPLTRPYRIAFRSIEEIDNLIVEIRTADGLLGLGAASPERHVTGETLEAC 62
Query: 127 VKV--REACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLW 184
+ +L TL E+A LP + A RA ++MAL D VA + +PL
Sbjct: 63 HAALDHDRLGWLMGRDIRTLPRLCRELAERLPAAPAA--RAALDMALHDLVAQCLGLPLV 120
Query: 185 RLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIH-A 243
+ G A +SL T++TI E A ++ LGF LK+ + + DF+ L+ +H
Sbjct: 121 EILGRAHDSLPTSVTIGIKPVEETLAEAREHLALGFRVLKVKLCGDEEQDFERLRRLHET 180
Query: 244 VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTY 303
+ +D N+ Y + + + + ++G+ EQP L +
Sbjct: 181 LAGRAVVRVDPNQSYDRDGLLRLDRLVQELGI--EFIEQPFPAGRTDWLRAL----PKAI 234
Query: 304 GISVVADESCRSLNDVQKVMQENLA-SVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDG 361
+ ADES D + A + NIKL K G+ +I +G+ LM
Sbjct: 235 RRRIAADESLLGPADAFALAAPPAACGIFNIKLMKCGGLAPARRIATIAETAGIDLMWGC 294
Query: 362 MIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQG 418
M E+R++ ALH A +Y++L+ F L+ D GG + T G G
Sbjct: 295 MDESRISIAAALHAALACPATRYLDLDGSFDLARDVAEGGFILEDGRLRVTERPGLG 351
|
| >1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A Length = 366 | Back alignment and structure |
|---|
Score = 278 bits (712), Expect = 1e-90
Identities = 118/357 (33%), Positives = 171/357 (47%), Gaps = 11/357 (3%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL 126
+ R E + V L+ P L +V E+V +R+ +G VGWGE ++TGD ++
Sbjct: 3 IIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSI 62
Query: 127 VKV--REACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLW 184
L L +I +L G+ A +A VEMAL D A +PL+
Sbjct: 63 ESAIHHVLKPALLGKSLAGYEAILHDIQHLLTGNMSA--KAAVEMALYDGWAQMCGLPLY 120
Query: 185 RLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIH- 242
++ GG ++L T T+ SP E + A Y K GF TLK+ VG+ +I D +Q I
Sbjct: 121 QMLGGYRDTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIRK 180
Query: 243 AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDT 302
V LDAN+G+ +EAV + K+ D G+ L EQPVH+DD +GL V D
Sbjct: 181 RVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKV----TDA 236
Query: 303 YGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDG 361
++ADES + +V+Q A ++NIKL K G+ G +I G+ M+
Sbjct: 237 TDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVGS 296
Query: 362 MIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQG 418
MIET+L A H AA I + + P +L D F GG SG+ + G G
Sbjct: 297 MIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLG 353
|
| >3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A* Length = 354 | Back alignment and structure |
|---|
Score = 276 bits (707), Expect = 4e-90
Identities = 99/344 (28%), Positives = 163/344 (47%), Gaps = 12/344 (3%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGD-QTKA 125
+++ R + L ++ L ++E+ ++ + +E G VG+GE +TG+
Sbjct: 3 IKQVHVRASKIKLKETFTIALGTIESADSAIVEIETEEGLVGYGEGGPGIFITGETLAGT 62
Query: 126 LVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWR 185
L + Q + P + + + +I + A +A +++A D + +PL++
Sbjct: 63 LETIELFGQAIIGLNPFNIEKIHEVMDKISAFAPAA--KAAIDIACYDLMGQKAQLPLYQ 120
Query: 186 LFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIH-AV 244
L GG N + T IT+ P ++ A + KLGF TLK+ VG I AD ++AI AV
Sbjct: 121 LLGGYDNQVITDITLGIDEPNVMAQKAVEKVKLGFDTLKIKVGTGIEADIARVKAIREAV 180
Query: 245 HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG 304
LDAN+ +T ++AV+ + L D + L EQPV R D GL V
Sbjct: 181 GFDIKLRLDANQAWTPKDAVKAIQALADYQI--ELVEQPVKRRDLEGLKYV----TSQVN 234
Query: 305 ISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGMI 363
+++ADESC D +++++ V+NIKL K G+ L+I + +G+ MI M
Sbjct: 235 TTIMADESCFDAQDALELVKKGTVDVINIKLMKCGGIHEALKINQICETAGIECMIGCMA 294
Query: 364 -ETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSG 406
ET + A HLAA I +L+ F L P GG +
Sbjct: 295 EETTIGITAAAHLAAAQKNITRADLDATFGLETAPVTGGVSLEA 338
|
| >3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A Length = 368 | Back alignment and structure |
|---|
Score = 273 bits (701), Expect = 5e-89
Identities = 84/344 (24%), Positives = 158/344 (45%), Gaps = 12/344 (3%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGD-QTKA 125
+ + E + V L P + L + + NV +R+ ++G +G+GE + + G+ A
Sbjct: 3 ITQVELYKSPVKLKEPFKISLGILTHANNVIVRIHTASGHIGYGECSPFMTIHGESMDTA 62
Query: 126 LVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWR 185
+ + + L + + + I+ G+ ++ +AL D A +PL+
Sbjct: 63 FIVGQYLAKGLIGTSCLDIVSNSLLMDAIIYGNSCI--KSAFNIALYDLAAQHAGLPLYA 120
Query: 186 LFGGASN-SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIH-A 243
GG + + T T+ P + + A + K GF +K+ VG + D + ++ I A
Sbjct: 121 FLGGKKDKIIQTDYTVSIDEPHKMAADAVQIKKNGFEIIKVKVGGSKELDVERIRMIREA 180
Query: 244 VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTY 303
+ +DAN+G++ E A+E L L + E+PV R+ ++ L + R
Sbjct: 181 AGDSITLRIDANQGWSVETAIETLTLLEPYNI--QHCEEPVSRNLYTALPKI----RQAC 234
Query: 304 GISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGM 362
I ++ADESC + D ++++Q N+KL+K G+ L II+ ++ + + + G
Sbjct: 235 RIPIMADESCCNSFDAERLIQIQACDSFNLKLSKSAGITNALNIIRLAEQAHMPVQVGGF 294
Query: 363 IETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSG 406
+E+RL A H+A I Y + +TP + DP GG
Sbjct: 295 LESRLGFTAAAHVALVSKTICYYDFDTPLMFEADPVRGGIVYQQ 338
|
| >3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A* Length = 379 | Back alignment and structure |
|---|
Score = 273 bits (699), Expect = 1e-88
Identities = 72/344 (20%), Positives = 149/344 (43%), Gaps = 11/344 (3%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL 126
+ + + + L + S +++++A+ + L NG G+G +TGD + +
Sbjct: 5 IIDIKTSIIKIPLKRTFITAVRSTNHIDSLAVELTLDNGVKGYGVAPATTAITGDTLQGM 64
Query: 127 VKVREAC--QFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLW 184
+ + S + L+ + + + A + +++A D +A DI +
Sbjct: 65 QYIIREIFAPVILGSDLSDYKQTLELAFKKVMFNSAA--KMAIDLAYHDLLAKEQDISVA 122
Query: 185 RLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIH-A 243
+L G +NS+ T ++I + AE + + F+ +K+ G + D +L+A+
Sbjct: 123 KLLGAKANSIVTDVSISCGNVAETIQNIQNGVEANFTAIKVKTGADFNRDIQLLKALDNE 182
Query: 244 VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTY 303
+ F DAN+G+ + + + ++N + + EQPV D + ++
Sbjct: 183 FSKNIKFRFDANQGWNLAQTKQFIEEINKYSLNVEIIEQPVKYYDIKAMAEI----TKFS 238
Query: 304 GISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGM 362
I VVADES D ++V+ E +++NIKLAK G+L +I K +G+ M+ M
Sbjct: 239 NIPVVADESVFDAKDAERVIDEQACNMINIKLAKTGGILEAQKIKKLADSAGISCMVGCM 298
Query: 363 IETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSG 406
+E+ A I +L+ +++D + +
Sbjct: 299 MESPAGILATASFALAED-ITVADLDPLDWVAKDLYSDYITFNE 341
|
| >1jpd_X L-Ala-D/L-Glu epimerase; enolase superfamily, muconate lactonizing enzyme subgroup, alpha/beta barrel, structural genomics, isomerase; 2.60A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 Length = 324 | Back alignment and structure |
|---|
Score = 240 bits (616), Expect = 6e-77
Identities = 79/335 (23%), Positives = 131/335 (39%), Gaps = 27/335 (8%)
Query: 68 QRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALV 127
+ + E L P + S V + +E G G GE P +
Sbjct: 5 RTVKVFEEAWPLHTPFVIARGSRSEARVVVVELE-EEGIKGTGECTPYPRYGESDASVMA 63
Query: 128 KVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLF 187
Q + P +E+ +ILP + R ++ AL D A L L
Sbjct: 64 ------QIMSVVPQLEKGLTREELQKILPAG---AARNALDCALWDLAARRQQQSLADLI 114
Query: 188 GG-ASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHP 246
G ++ TA T+ +P + + AS + G LK+ + + + + AI P
Sbjct: 115 GITLPETVITAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDNH--LISERMVAIRTAVP 172
Query: 247 HCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGIS 306
+ I+DANE + +E L D+GV + EQP+ D + L + +
Sbjct: 173 DATLIVDANESWRAEGLAARCQLLADLGV--AMLEQPLPAQDDAAL------ENFIHPLP 224
Query: 307 VVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGMIET 365
+ ADESC + ++++ + +VNIKL K G+ L + R G LM+ M+ T
Sbjct: 225 ICADESCHTRSNLKALK--GRYEMVNIKLDKTGGLTEALALATEARAQGFSLMLGCMLCT 282
Query: 366 RLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVG 400
A AL L + + +L+ P L+ D
Sbjct: 283 SRAISAALPLVPQ---VSFADLDGPTWLAVDVEPA 314
|
| >3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A* Length = 367 | Back alignment and structure |
|---|
Score = 239 bits (612), Expect = 9e-76
Identities = 70/347 (20%), Positives = 141/347 (40%), Gaps = 16/347 (4%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL 126
+ ++ + PL V E+V +RV +G VG E P G+ +
Sbjct: 3 IVAIGAIPFSIPYTKPLRFASGEVHAAEHVLVRVHTDDGIVGVAEAPPRPFTYGETQTGI 62
Query: 127 VKVREAC--QFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLW 184
V V E L T A +AR G+ A +A ++MA+ DA+ S+ + +
Sbjct: 63 VAVIEQYFAPALIGLTLTEREVAHTRMART-VGNPTA--KAAIDMAMWDALGQSLRLSVS 119
Query: 185 RLFGGASNSLSTAITIPAVSPAE-ASELASKYCKLGFSTLKLNVGRN-ITADFDVLQAIH 242
+ GG ++ + + + P + +E G +T K+ VGR + D V++A+
Sbjct: 120 EMLGGYTDRMRVSHMLGFDDPVKMVAEAERIRETYGINTFKVKVGRRPVQLDTAVVRALR 179
Query: 243 -AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARD 301
+D N G+++ E++ + ++ D+ + + E+ DD +
Sbjct: 180 ERFGDAIELYVDGNRGWSAAESLRAMREMADLDL--LFAEELCPADDVLSRRRL----VG 233
Query: 302 TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDG 361
+ +ADES + DV + + A+ ++IK A+ G G+ ++ GL +++
Sbjct: 234 QLDMPFIADESVPTPADVTREVLGGSATAISIKTARTGFTGSTRVHHLAEGLGLDMVMGN 293
Query: 362 MIETRLATGFALHLAAGLGCIKY--VNLNTPFLLSEDPFVGGCEVSG 406
I+ ++ T + L+ +S+D ++S
Sbjct: 294 QIDGQIGTACTVSFGTAFERTSRHAGELSNFLDMSDDLLTVPLQISD 340
|
| >3ijl_A Muconate cycloisomerase; enolase superfamily, dipeptide epimerase, L-Pro-D-Glu, nonpr binding; HET: DGL; 1.50A {Bacteroides thetaiotaomicron} PDB: 3iji_A* 3ijq_A* Length = 338 | Back alignment and structure |
|---|
Score = 236 bits (605), Expect = 5e-75
Identities = 81/344 (23%), Positives = 152/344 (44%), Gaps = 22/344 (6%)
Query: 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVK 128
+ + L ++ S +V + +E G G+GE A +P G+ ++++
Sbjct: 2 KMTFFPYELKLRHVFTVATYSRTTTPDVQVEIE-YEGVTGYGE-ASMPPYLGETVESVMN 59
Query: 129 VREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFG 188
+ + S P L L + + P A +A V++AL D V + P ++++G
Sbjct: 60 FLKKVNLEQFSDPFQLEDILSYVDSLSPKDTAA--KAAVDIALHDLVGKLLGAPWYKIWG 117
Query: 189 GASN-SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPH 247
+ ST TI +P K C F+ LK+ +GR+ D ++++ I +
Sbjct: 118 LNKEKTPSTTFTIGIDTPDVVRAKT-KECAGLFNILKVKLGRD--NDKEMIETIRS-VTD 173
Query: 248 CSFILDANEGYTSEE-AVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGIS 306
+DAN+G+ + A++++ L + G+ V+ EQP+ ++ + V +
Sbjct: 174 LPIAVDANQGWKDRQYALDMIHWLKEKGI--VMIEQPMPKEQLDDIAWV----TQQSPLP 227
Query: 307 VVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGMIET 365
V ADES + L DV + + +NIKL K G+ +++ G+ +M+ M ET
Sbjct: 228 VFADESLQRLGDVAALK--GAFTGINIKLMKCTGMREAWKMVTLAHALGMRVMVGCMTET 285
Query: 366 RLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIY 409
A A + + + +L+ L+S D F G V+G I
Sbjct: 286 SCAISAASQFSPA---VDFADLDGNLLISNDRFKGVEVVNGKIT 326
|
| >1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1 Length = 393 | Back alignment and structure |
|---|
Score = 236 bits (605), Expect = 3e-74
Identities = 75/348 (21%), Positives = 143/348 (41%), Gaps = 21/348 (6%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLV-----TGD 121
Q+A + L AP +++ + I + G G+GE+ PL T
Sbjct: 22 FQKARLIHAELPLLAPFKTSYGELKSKDFYIIELINEEGIHGYGELEAFPLPDYTEETLS 81
Query: 122 QTKALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDI 181
++K + L Q + E+ + G+E A +A VE+A+ DA A
Sbjct: 82 SAILIIK-EQLLPLLAQRKIRKPE-EIQELFSWIQGNEMA--KAAVELAVWDAFAKMEKR 137
Query: 182 PLWRLFGGASNSLSTAITIPAVSPAEA-SELASKYCKLGFSTLKLNVGRNITADFDVLQA 240
L ++ G S+ ++I E +L ++Y G+ +KL + N D ++A
Sbjct: 138 SLAKMIGATKESIKVGVSIGLQQNVETLLQLVNQYVDQGYERVKLKIAPN--KDIQFVEA 195
Query: 241 IHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFAR 300
+ P S + DAN Y E+ + L +L+ + + EQP D+ + +
Sbjct: 196 VRKSFPKLSLMADANSAYNREDFLL-LKELDQYDL--EMIEQPFGTKDFVDHAWL----Q 248
Query: 301 DTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMI 359
+ DE+ RS+ DV++ +N+KLA+ G+ L+I + + + +
Sbjct: 249 KQLKTRICLDENIRSVKDVEQAHSIGSCRAINLKLARVGGMSSALKIAEYCALNEILVWC 308
Query: 360 DGMIETRLATGFALHLAAGLGCIKYVNLN-TPFLLSEDPFVGGCEVSG 406
GM+E + + LAA + +++ + +ED E++
Sbjct: 309 GGMLEAGVGRAHNIALAARNEFVFPGDISASNRFFAEDIVTPAFELNQ 356
|
| >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* Length = 369 | Back alignment and structure |
|---|
Score = 234 bits (598), Expect = 1e-73
Identities = 68/335 (20%), Positives = 142/335 (42%), Gaps = 14/335 (4%)
Query: 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVK 128
+ + L P + S ++ ++ +++E G +G+GE VTG+ ++
Sbjct: 5 AIHLYAIRLPLRNPFVISYGSYSDMPSIIVKMETDEGIIGYGEGVADDHVTGESWESTFH 64
Query: 129 V--REACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRL 186
L P + D + + G A +A +++A D + ++ P+++L
Sbjct: 65 TLKHTLTPALIGQNPMNIEKIHDMMDNTIYGVPTA--KAAIDIACFDIMGKKLNQPVYQL 122
Query: 187 FGGAS-NSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIH-AV 244
GG + P +E A+ + G+ + K+ VG N+ D ++A+ V
Sbjct: 123 IGGRYHEEFPVTHVLSIADPENMAEEAASMIQKGYQSFKMKVGTNVKEDVKRIEAVRERV 182
Query: 245 HPHCSFILDANEGYTS-EEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTY 303
+ +D N+G+ + + L L + + EQPV DD + + R
Sbjct: 183 GNDIAIRVDVNQGWKNSANTLTALRSLGHLNI--DWIEQPVIADDIDAMAHI----RSKT 236
Query: 304 GISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGM 362
+ ++ DE +S +++++++ A VNIKL K G+ +++ +G+ + M
Sbjct: 237 DLPLMIDEGLKSSREMRQIIKLEAADKVNIKLMKCGGIYPAVKLAHQAEMAGIECQVGSM 296
Query: 363 IETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDP 397
+E+ +A+ H+A I V L P ++D
Sbjct: 297 VESSVASSAGFHVAFSKKIITSVELTGPLKFTKDI 331
|
| >2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure initiative; 1.60A {Desulfotalea psychrophila LSV54} Length = 377 | Back alignment and structure |
|---|
Score = 231 bits (591), Expect = 2e-72
Identities = 62/360 (17%), Positives = 120/360 (33%), Gaps = 35/360 (9%)
Query: 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGD-QTKALV 127
R ++ P + + +R++ +G G GEV+++P ++ D + +
Sbjct: 6 ELSYRRSDLIFKRPAGTSRGVLTSKPTWFVRLD-IDGHGGQGEVSLIPGLSLDPEEQIGR 64
Query: 128 KVREACQFLRQSPPTTLNFALDEI---------------------ARILPGSEFASVRAG 166
++ + LR P L L E ++ F ++R
Sbjct: 65 ELDLLARRLRAEEPIRLRQFLAERGGADFSDYRSVLTDIAGILDSWQVSTDGRFPALRFA 124
Query: 167 VEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLN 226
+EMAL+D ++ F + I A E G+ LKL
Sbjct: 125 LEMALLDLLSGGRQEWFASDFTRGEKRIPVNGLIWMGEAAFMQEQIEAKLAEGYGCLKLK 184
Query: 227 VG-RNITADFDVLQAIHAVHP--HCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQP 283
+G + + +L I +DAN ++ A + L +L+ + EQP
Sbjct: 185 IGAIDFDKECALLAGIRESFSPQQLEIRVDANGAFSPANAPQRLKRLSQFHL--HSIEQP 242
Query: 284 VHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKV--MQENLASVVNIKLAKF-GV 340
+ + WS + + +++ DE L Q+ + + +K + G
Sbjct: 243 IRQHQWSEMAAL----CANSPLAIALDEELIGLGAEQRSAMLDAIRPQYIILKPSLLGGF 298
Query: 341 LGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVG 400
Q I+ R+ G+ I +E+ L A L T L + +
Sbjct: 299 HYAGQWIELARERGIGFWITSALESNLGLAAIAQWTALYQPTMPQGLGTGQLYTNNLPSN 358
|
| >2ozt_A TLR1174 protein; structural genomics, O-succinylbenzoate synthase, PSI, protein structure initiative; 1.42A {Synechococcus elongatus} PDB: 3h7v_A Length = 332 | Back alignment and structure |
|---|
Score = 223 bits (571), Expect = 4e-70
Identities = 69/352 (19%), Positives = 117/352 (33%), Gaps = 31/352 (8%)
Query: 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVK 128
R + R L PL+ + + +R+E G VG+GE+A +P +
Sbjct: 4 RWQWRIYEEPLQEPLTTAQGVWRSRSGIYLRLEDEQGQVGYGEIAPLPGWGSETLN---- 59
Query: 129 VREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFG 188
+Q P + I LP ++F A ++ P+ L G
Sbjct: 60 --ADIALCQQLPGHLTPEIMATIPEALPAAQFG--FATAWQSVGRLPYRVRPWPICALLG 115
Query: 189 GASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVG-RNITADFDVLQAIH-AVHP 246
S A E + + G +T K VG + + +L+A+ A+ P
Sbjct: 116 ---------------SGQAALEQWQQSWQRGQTTFKWKVGVMSPEEEQAILKALLAALPP 160
Query: 247 HCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF-EQPVHRDDWSGLHDVSNFARDTYGI 305
LDAN + A L+ G + + EQP+ D W L + T
Sbjct: 161 GAKLRLDANGSWDRATANRWFAWLDRHGNGKIEYVEQPLPPDQWQALLSL----AQTVTT 216
Query: 306 SVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIET 365
++ DES S +VQ+ + IK A FG +L ++ L+ +E
Sbjct: 217 AIALDESVVSAAEVQRWVDRGWPGFFVIKTALFGDPDSLSLLLRRGLEPQRLVFSSALEG 276
Query: 366 RLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQ 417
+A HL + P + ++ + G
Sbjct: 277 AIARTAIFHLLETWQPCHALGFGVDRWR-SAPLLTTLTAYERLWERLDQEGH 327
|
| >3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A Length = 385 | Back alignment and structure |
|---|
Score = 224 bits (573), Expect = 1e-69
Identities = 74/345 (21%), Positives = 126/345 (36%), Gaps = 15/345 (4%)
Query: 69 RAEGRELNVALSAPLSLGLSSVEN-VENVAIRVELSNGCVGWGEVAVVPLVTGD-QTKAL 126
+ L + + + G+ VE E V +R+ G G+GE + + TG +
Sbjct: 12 AMDLWHLALPVVSARDHGIGRVEGSCEIVVLRLVAEGGAEGFGEASPWAVFTGTPEASYA 71
Query: 127 VKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRL 186
R + +DE AR + A +A ++ AL+D ++P+W L
Sbjct: 72 ALDRYLRPLVIGRRVGDRVAIMDEAARAVAHCTEA--KAALDSALLDLAGRISNLPVWAL 129
Query: 187 FGGAS-NSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVG-RNITADFDVLQAIHAV 244
GG +++ + +I L + G +KL G R+ D L+ I
Sbjct: 130 LGGKCRDTIPLSCSIANPDFDADIALMERLRADGVGLIKLKTGFRDHAFDIMRLELIARD 189
Query: 245 HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG 304
P +D N+G +EAV + + EQPV + + + R
Sbjct: 190 FPEFRVRVDYNQGLEIDEAVPRVLDVAQFQP--DFIEQPVRAHHFELMARL----RGLTD 243
Query: 305 ISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGMI 363
+ ++ADES D+ + E + V+IK+ K G+ + + GL M
Sbjct: 244 VPLLADESVYGPEDMVRAAHEGICDGVSIKIMKSGGLTRAQTVARIAAAHGLMAYGGDMF 303
Query: 364 ETRLATGFALHLAAGLGCIKYVN--LNTPFLLSEDPFVGGCEVSG 406
E LA H+ A I + L+ED V
Sbjct: 304 EAGLAHLAGTHMIAATPEITLGCEFYQASYFLNEDILETPFRVEA 348
|
| >2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus} Length = 369 | Back alignment and structure |
|---|
Score = 223 bits (571), Expect = 1e-69
Identities = 72/347 (20%), Positives = 137/347 (39%), Gaps = 20/347 (5%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAV--VPLVTGD-QT 123
++ AE R L + L + +R+ G G GE + +PL +
Sbjct: 3 IEAAELRILELPLKFRFETSFGVQTKRTILLLRLF-GEGLEGLGEGVMERLPLYREETVA 61
Query: 124 KALVKVREACQ-FLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIP 182
A + E + + +A G+ A +A +EMA D A ++ P
Sbjct: 62 GARYLLEEVFLPRVLGRDLPNPEALREALAPF-RGNPMA--KAVLEMAFFDLWAKALGRP 118
Query: 183 LWRLFGGASNSLSTAITIP-AVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAI 241
LW++ GG ++ +++ S + + ++ + G+ +KL + D++VL+A+
Sbjct: 119 LWQVLGGVRQAVEVGVSLGIQPSVEDTLRVVERHLEEGYRRIKLKIKPG--WDYEVLKAV 176
Query: 242 HAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARD 301
P + DAN Y+ + L +L+++ + EQP+ DD + +
Sbjct: 177 REAFPEATLTADANSAYSLANLAQ-LKRLDELRL--DYIEQPLAYDDLLDHAKL----QR 229
Query: 302 TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMID 360
+ DES +K ++ V N+K A+ G +L++ +G+ L +
Sbjct: 230 ELSTPICLDESLTGAEKARKAIELGAGRVFNVKPARLGGHGESLRVHALAESAGIPLWMG 289
Query: 361 GMIETRLATGFALHLAAGLGCIKYVNL-NTPFLLSEDPFVGGCEVSG 406
GM+E + LHLA G K ++ + ED E
Sbjct: 290 GMLEAGVGRAHNLHLATLPGFTKPGDVSSASRYWEEDIVEEALEAKD 336
|
| >3qld_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, isomerase; HET: MSE; 1.85A {Alicyclobacillus acidocaldarius LAA1} Length = 388 | Back alignment and structure |
|---|
Score = 223 bits (570), Expect = 3e-69
Identities = 76/349 (21%), Positives = 139/349 (39%), Gaps = 26/349 (7%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAV--VPLVTG---D 121
+Q L++ L P+ + + + +++ ++G GW E P T D
Sbjct: 3 LQTCVLHRLSLPLKFPMRTAHGHIREKQAILVQLVDADGIEGWSECVALAEPTYTEECTD 62
Query: 122 QTKALVKVREACQFLRQSPPTTLN-----FALDEIARILPGSEFASVRAGVEMALIDAVA 176
++ +F R + + + E R + G+ + A +EMA+ D A
Sbjct: 63 TAWVMLVHHLVPRFARWLRAASQDQDVDPRTVCEALRDVRGNRMS--VAAIEMAVWDWYA 120
Query: 177 NSIDIPLWRLFGGASNSLSTAITIPAVSPAEA-SELASKYCKLGFSTLKLNVGRNITADF 235
PL L GG + + + T+ + + + GF +KL + D
Sbjct: 121 ARTGQPLVGLLGGGRDRVEVSATLGMSESLDVLIQSVDAAVEQGFRRVKLKIAPG--RDR 178
Query: 236 DVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDV 295
++A+ +P + DAN Y E+A VL +L+ + EQP+ DDW L +
Sbjct: 179 AAIKAVRLRYPDLAIAADANGSYRPEDA-PVLRQLDAYDL--QFIEQPLPEDDWFDLAKL 235
Query: 296 SNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSG 354
+ + V DES RS+ +++ + A V+N+K + G TL+ + ++G
Sbjct: 236 ----QASLRTPVCLDESVRSVRELKLTARLGAARVLNVKPGRLGGFGATLRALDVAGEAG 291
Query: 355 LHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPF--LLSEDPFVGG 401
+ + GM ET + L AA L ++Y P +D
Sbjct: 292 MAAWVGGMYETGVGRVHGLIAAA-LPLMRYATDLGPSDRYFEQDVLKEP 339
|
| >1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1 Length = 386 | Back alignment and structure |
|---|
Score = 222 bits (569), Expect = 4e-69
Identities = 61/348 (17%), Positives = 121/348 (34%), Gaps = 21/348 (6%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLV-----TGD 121
+Q E ++ + L P +E + G G+GE+ T
Sbjct: 22 IQSIETYQVRLPLKTPFVTSYGRLEEKAFDLFVITDEQGNQGFGELVAFEQPDYVQETLV 81
Query: 122 QTKALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDI 181
+ +++ + L + I + G +A +E A+ D A
Sbjct: 82 TERFIIQ-QHLIPLLLTEAIEQPQ-EVSTIFEEVKGHWMG--KAALETAIWDLYAKRQQK 137
Query: 182 PLWRLFGGASNSLSTAITIPAVSPAEA-SELASKYCKLGFSTLKLNVGRNITADFDVLQA 240
L FG + I++ + + G+ +KL + D + +
Sbjct: 138 SLTEFFGPTRRKIPVGISLGIQEDLPQLLKQVQLAVEKGYQRVKLKIRPG--YDVEPVAL 195
Query: 241 IHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFAR 300
I P+ ++DAN YT + + L +L+ + + EQP DD+ + +
Sbjct: 196 IRQHFPNLPLMVDANSAYTLADLPQ-LQRLDHYQL--AMIEQPFAADDFLDHAQL----Q 248
Query: 301 DTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMI 359
+ DE+ RSL D Q + +N+K+ + G+ L+I +++ L + +
Sbjct: 249 RELKTRICLDENIRSLKDCQVALALGSCRSINLKIPRVGGIHEALKIAAFCQENDLLVWL 308
Query: 360 DGMIETRLATGFALHLAAGLGCIKYVNL-NTPFLLSEDPFVGGCEVSG 406
GM E+ + L A+ ++ T ED +
Sbjct: 309 GGMFESGVGRALNLQFASQPTFSFPGDISATERYFYEDIITEPFILEQ 356
|
| >3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp} Length = 381 | Back alignment and structure |
|---|
Score = 222 bits (567), Expect = 8e-69
Identities = 77/350 (22%), Positives = 146/350 (41%), Gaps = 19/350 (5%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTG-----D 121
V++ E ++V P L ++++ V +R+ S+G G GE + ++ +
Sbjct: 7 VEQIESWIVDVPTIRPHKLSMTTMGCQSLVIVRLTRSDGICGIGEATTIGGLSYGVESPE 66
Query: 122 QTKALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDI 181
+ + L+ P LN + + G+ FA ++ +E AL+DA ++ +
Sbjct: 67 AISSAIT-HYLTPLLKGQPADNLNALTARMNGAIKGNTFA--KSAIETALLDAQGKALGL 123
Query: 182 PLWRLFGGAS-NSLSTAITIPAVSPAE-ASELASKYCKLGFSTLKLNVG-RNITADFDVL 238
P+ L GGA +L T+ + A+ +E + KL +G R + D
Sbjct: 124 PVSALLGGALQTALPVLWTLASGDTAKDIAEGEKLLAEGRHRAFKLKIGARELATDLRHT 183
Query: 239 QAIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSN 297
+AI A+ S +D N+ + + + +L MGV L EQPV D + L +
Sbjct: 184 RAIVEALGDRASIRVDVNQAWDAATGAKGCRELAAMGV--DLIEQPVSAHDNAALVRL-- 239
Query: 298 FARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLH 356
+++ADE+ + D ++ Q+ +K+AK G L + + + +G+
Sbjct: 240 --SQQIETAILADEAVATAYDGYQLAQQGFTGAYALKIAKAGGPNSVLALARVAQAAGIG 297
Query: 357 LMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSG 406
L M+E + T +LH + L + P LL +D +
Sbjct: 298 LYGGTMLEGTVGTVASLHAWSTLPLQWGTEMFGPLLLKDDIVSVPLTFAD 347
|
| >3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A Length = 382 | Back alignment and structure |
|---|
Score = 215 bits (551), Expect = 2e-66
Identities = 82/351 (23%), Positives = 150/351 (42%), Gaps = 20/351 (5%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLV-----TGD 121
++ E +++ P L + +++N V IR+ ++G G GE + + + D
Sbjct: 8 IESIETIIVDLPTIRPHKLAMHTMQNQTLVLIRLRCADGIEGLGESTTIGGLAYGNESPD 67
Query: 122 QTKALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDI 181
K + R L + +N A+ + + + G+ FA ++G+E AL+DA + +
Sbjct: 68 SIKTNID-RFVAPLLIGQDASNINAAMLRLEQSIRGNTFA--KSGIESALLDAQGKRLGL 124
Query: 182 PLWRLFGGAS-NSLSTAITIPAVSPAE-ASELASKYCKLGFSTLKLNVGR-NITADFDVL 238
P+ L GG ++L A T+ + A+ +E KL +G + D +
Sbjct: 125 PVSELLGGRVRDALPVAWTLASGDTAKDIAEAQKMLDLRRHRIFKLKIGAGEVDRDLAHV 184
Query: 239 QAIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSN 297
AI A+ S +D N+ + A+ L G+ L EQP+ R++ +G+ +
Sbjct: 185 IAIKKALGDSASVRVDVNQAWDEAVALRACRILGGNGI--DLIEQPISRNNRAGMVRL-- 240
Query: 298 FARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLH 356
+ ++ADES + D + +E ASV +K+AK G TL+ +G+
Sbjct: 241 --NASSPAPIMADESIECVEDAFNLAREGAASVFALKIAKNGGPRATLRTAAIAEAAGIG 298
Query: 357 LMIDGMIETRLATGFALHLAAGLGCIKY-VNLNTPFLLSEDPFVGGCEVSG 406
L M+E + T + H L + + L P LL+ED
Sbjct: 299 LYGGTMLEGGIGTLASAHAFLTLNKLSWDTELFGPLLLTEDILAEPPVYRD 349
|
| >1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1 Length = 370 | Back alignment and structure |
|---|
Score = 213 bits (544), Expect = 2e-65
Identities = 79/349 (22%), Positives = 154/349 (44%), Gaps = 21/349 (6%)
Query: 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLV-----TGDQT 123
++V PL + ++V V ++V+ + G VG GE V + +
Sbjct: 5 AISTTIVDVPTRRPLQMSFTTVHKQSYVIVQVK-AGGLVGIGEGGSVGGPTWGSESAETI 63
Query: 124 KALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPL 183
K ++ A L + L+ A + R + G+ A +A +++AL D A ++++ +
Sbjct: 64 KVIIDNYLA-PLLVGKDASNLSQARVLMDRAVTGNLSA--KAAIDIALHDLKARALNLSI 120
Query: 184 WRLFGGAS-NSLSTAITIPAVSPAE-ASELASKYCKLGFSTLKLNVG-RNITADFDVLQA 240
L GG S+ A T+ + A + K+ +G R D + +++
Sbjct: 121 ADLIGGTMRTSIPIAWTLASGDTARDIDSALEMIETRRHNRFKVKLGARTPAQDLEHIRS 180
Query: 241 IH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFA 299
I AV S +D N+G+ + A + +L + GV L EQPV R ++ L +
Sbjct: 181 IVKAVGDRASVRVDVNQGWDEQTASIWIPRLEEAGV--ELVEQPVPRANFGALRRL---- 234
Query: 300 RDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLM 358
+ G++++ADES SL+ ++ +++ ++KL G+ TL++ +G+
Sbjct: 235 TEQNGVAILADESLSSLSSAFELARDHAVDAFSLKLCNMGGIANTLKVAAVAEAAGISSY 294
Query: 359 IDGMIETRLATGFALHLAAGLGCIKYVN-LNTPFLLSEDPFVGGCEVSG 406
M+++ + T ALH+ A L + Y L P++L + E+
Sbjct: 295 GGTMLDSTVGTAAALHVYATLPSLPYGCELIGPWVLGDRLTQQDLEIKD 343
|
| >1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A* Length = 368 | Back alignment and structure |
|---|
Score = 210 bits (538), Expect = 1e-64
Identities = 68/347 (19%), Positives = 129/347 (37%), Gaps = 20/347 (5%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTK 124
+ E R + + L AP + E + +R G GWGE + PL + +
Sbjct: 3 LSGVELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAG-EGWGECVTMAGPLYSSEYND 61
Query: 125 ALVKV--REACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIP 182
V L + T + + G A + +EMA++DA + +
Sbjct: 62 GAEHVLRHYLIPALLAAEDITAA-KVTPLLAKFKGHRMA--KGALEMAVLDAELRAHERS 118
Query: 183 LWRLFGGASNSLSTAITIPAV-SPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAI 241
G +S+ +++ + + + ++ Y G+ +KL + D + ++A+
Sbjct: 119 FAAELGSVRDSVPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIEPG--WDVEPVRAV 176
Query: 242 H-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFAR 300
+DAN YT +A + L +L+ G+ +L EQP+ +D G ++
Sbjct: 177 RERFGDDVLLQVDANTAYTLGDAPQ-LARLDPFGL--LLIEQPLEEEDVLGHAEL----A 229
Query: 301 DTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMI 359
+ DES S ++ +VNIK + G L ++ G+ +
Sbjct: 230 RRIQTPICLDESIVSARAAADAIKLGAVQIVNIKPGRVGGYLEARRVHDVCAAHGIPVWC 289
Query: 360 DGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSG 406
GMIET L + LA+ + + + +SG
Sbjct: 290 GGMIETGLGRAANVALASLPNFTLPGDTSASDRFYKTDITEPFVLSG 336
|
| >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} Length = 383 | Back alignment and structure |
|---|
Score = 210 bits (538), Expect = 1e-64
Identities = 84/350 (24%), Positives = 148/350 (42%), Gaps = 18/350 (5%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTK 124
+Q+ E R L+V L P ++ + + V L NG +G+GE V P G+ +
Sbjct: 8 IQKVESRILDVPLIRPHGFATTTSTEQHILLVSVHLENGVIGYGEGVVPGGPWWGGESVE 67
Query: 125 ALVKVREAC--QFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIP 182
+ + + L + L + ++ R++ + +A +A V++A+ DA A S+++P
Sbjct: 68 TMKALVDGYLAPVLIGRAVSELAGIMADLERVVARARYA--KAAVDVAMHDAWARSLNVP 125
Query: 183 LWRLFGGAS-NSLSTAITIPAVSPAE-ASELASKYCKLGFSTLKLNVG-RNITADFDVLQ 239
+ L GG + + + + +E+ + + G + KL +G + D +
Sbjct: 126 VRDLLGGTVRDKVDVTWALGVLPLDVAVAEIEERIEEFGNRSFKLKMGAGDPAEDTRRVA 185
Query: 240 AIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNF 298
+ V S +D N + A+ L L + GV LFEQP DD L ++
Sbjct: 186 ELAREVGDRVSLRIDINARWDRRTALHYLPILAEAGV--ELFEQPTPADDLETLREI--- 240
Query: 299 ARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHL 357
+SV+ADES + + V++ A V+ +K K G+L + +I GL
Sbjct: 241 -TRRTNVSVMADESVWTPAEALAVVKAQAADVIALKTTKHGGLLESKKIAAIAEAGGLAC 299
Query: 358 MIDGMIETRLATGFALHLAAGLGCIKYVN-LNTPFLLSEDPFVGGCEVSG 406
+E + T +L AA I Y L P LL + V E
Sbjct: 300 HGATSLEGPIGTAASLQFAASTKAISYGTELFGPQLLKDTYIVQEFEYKD 349
|
| >3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} Length = 378 | Back alignment and structure |
|---|
Score = 209 bits (535), Expect = 3e-64
Identities = 75/341 (21%), Positives = 136/341 (39%), Gaps = 19/341 (5%)
Query: 69 RAEGRELNVALSAP--LSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL 126
R ++++ L P LS G E ++ +++E G GWGE
Sbjct: 7 RITVYQVDLPLEHPYWLSGGRLKFELLDATLVKLETDAGITGWGEGTPWGHTYVPAHGPG 66
Query: 127 VK--VREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLW 184
++ + F+ P L + LPG +A ++ ++MA D + +P+
Sbjct: 67 IRAGIETMAPFVLGLDPRRLLDVERAMDIALPGHLYA--KSPIDMACWDIAGQAAGLPIA 124
Query: 185 RLFGGAS-NSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIH- 242
L GG S A ++ A S E + +Y + G+ + +G ++ D ++ +
Sbjct: 125 DLMGGGSRTPRPIASSVGAKSVEETRAVIDRYRQRGYVAHSVKIGGDVERDIARIRDVED 184
Query: 243 AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDT 302
P + D N G+T ++A+ V+ D+ V+FEQP + + R
Sbjct: 185 IREPGEIVLYDVNRGWTRQQALRVMRATEDLH---VMFEQPGE--TLDDIAAI----RPL 235
Query: 303 YGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDG 361
+ V DE +L D +V ++ LA V IKL + G+ ++ G+ + +
Sbjct: 236 HSAPVSVDECLVTLQDAARVARDGLAEVFGIKLNRVGGLTRAARMRDIALTHGIDMFVMA 295
Query: 362 MIETRLATGFALHLAAGLGCIKYVN-LNTPFLLSEDPFVGG 401
+ LA ALHLAA + +L+ D G
Sbjct: 296 TGGSVLADAEALHLAATIPDHACHAVWACQDMLTVDIAGGR 336
|
| >2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP} Length = 397 | Back alignment and structure |
|---|
Score = 209 bits (535), Expect = 6e-64
Identities = 69/356 (19%), Positives = 138/356 (38%), Gaps = 26/356 (7%)
Query: 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVA-VVPLVTG---DQTK 124
+ E ++ + + +++ ++ V +++ G VG + G D
Sbjct: 7 KVEVIPISTPMKRAQLMRGATLARIDGVLLKLHSDEGLVGIADAGDTSSWYRGETQDSIT 66
Query: 125 ALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLW 184
+++ A + L PT + + + + + A +A V+ AL D V +P++
Sbjct: 67 SMICDFFAPKVLLGEDPTKIEKIVGRMDILTRDNNQA--KATVDFALHDLVGKRFGVPVY 124
Query: 185 RLFGGASN-SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIH- 242
+L GG + + + + A P +E A + GF +KL G + AD ++ +
Sbjct: 125 QLLGGKTIERIPLGLVLGAGEPEAVAEEALAVLREGFHFVKLKAGGPLKADIAMVAEVRR 184
Query: 243 AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDT 302
AV +D N +T ++A+ + L EQP+ D G+ + R
Sbjct: 185 AVGDDVDLFIDINGAWTYDQALTTIRALEKYN--LSKIEQPLPAWDLDGMARL----RGK 238
Query: 303 YGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDG 361
+ ADES + L+D+ ++ + A + IK K G+L + + R + L ++
Sbjct: 239 VATPIYADESAQELHDLLAIINKGAADGLMIKTQKAGGLLKAQRWLTLARLANLPVICGC 298
Query: 362 MIETRLATGFALHLAAGL-----------GCIKYVNLNTPFLLSEDPFVGGCEVSG 406
M+ + L A HL A G + + + D + G
Sbjct: 299 MVGSGLEASPAAHLLAANDWIAQFPQENAGPLHIHDCLNSRDIDNDIALNVPRFEG 354
|
| >1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} SCOP: c.1.11.2 d.54.1.1 PDB: 2chr_A Length = 370 | Back alignment and structure |
|---|
Score = 205 bits (525), Expect = 9e-63
Identities = 79/348 (22%), Positives = 154/348 (44%), Gaps = 19/348 (5%)
Query: 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTKAL 126
E ++V P+ + +++V V +RV S G VG GE V P+ + + + +
Sbjct: 5 AIEAVIVDVPTKRPIQMSITTVHQQSYVIVRVY-SEGLVGVGEGGSVGGPVWSAECAETI 63
Query: 127 VKVREAC--QFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLW 184
+ E L + ++ AL +AR + G+ A +A VEMAL+D A ++ + +
Sbjct: 64 KIIVERYLAPHLLGTDAFNVSGALQTMARAVTGNASA--KAAVEMALLDLKARALGVSIA 121
Query: 185 RLFGGAS-NSLSTAITIPAVSPAE-ASELASKYCKLGFSTLKLNVG-RNITADFDVLQAI 241
L GG +++ A T+ + + + K+ +G R+ D ++A+
Sbjct: 122 ELLGGPLRSAIPIAWTLASGDTKRDLDSAVEMIERRRHNRFKVKLGFRSPQDDLIHMEAL 181
Query: 242 H-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFAR 300
++ +D N+ + + A + +L +GV L EQPV R++ L +
Sbjct: 182 SNSLGSKAYLRVDVNQAWDEQVASVYIPELEALGV--ELIEQPVGRENTQALRRL----S 235
Query: 301 DTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMI 359
D ++++ADES +L + ++ V ++KL GV T +I SG+
Sbjct: 236 DNNRVAIMADESLSTLASAFDLARDRSVDVFSLKLCNMGGVSATQKIAAVAEASGIASYG 295
Query: 360 DGMIETRLATGFALHLAAGLGCIKY-VNLNTPFLLSEDPFVGGCEVSG 406
M+++ + T AL L + + + + L PF+L++ E+
Sbjct: 296 GTMLDSTIGTSVALQLYSTVPSLPFGCELIGPFVLADTLSHEPLEIRD 343
|
| >1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A Length = 375 | Back alignment and structure |
|---|
Score = 200 bits (511), Expect = 1e-60
Identities = 65/347 (18%), Positives = 126/347 (36%), Gaps = 20/347 (5%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTK 124
++ AE + L V+ + V + + G G E + P+ +
Sbjct: 10 IEAAEIVVARLPLKFRFETSFG-VQTHKVVPLLILHGEGVQGVAEGTMEARPMYREETIA 68
Query: 125 ALVKVREAC--QFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIP 182
+ + + D + G+ A RA VEMA D A ++ +P
Sbjct: 69 GALDLLRGTFLPAILGQTFANPEAVSDALGSY-RGNRMA--RAMVEMAAWDLWARTLGVP 125
Query: 183 LWRLFGGASNSLSTAITIPAVSPAEA-SELASKYCKLGFSTLKLNVGRNITADFDVLQAI 241
L L GG + +++ + +A +L ++ + G+ +KL + D ++A
Sbjct: 126 LGTLLGGHKEQVEVGVSLGIQADEQATVDLVRRHVEQGYRRIKLKIKPG--WDVQPVRAT 183
Query: 242 HAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARD 301
P +DAN YT +A L +L++ + EQP+ DD ++
Sbjct: 184 REAFPDIRLTVDANSAYTLADAGR-LRQLDEYDL--TYIEQPLAWDDLVDHAEL----AR 236
Query: 302 TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMID 360
+ DES S +D +K + V+N+K+A+ G + ++ + G +
Sbjct: 237 RIRTPLCLDESVASASDARKALALGAGGVINLKVARVGGHAESRRVHDVAQSFGAPVWCG 296
Query: 361 GMIETRLATGFALHLAAGLGCIKYV-NLNTPFLLSEDPFVGGCEVSG 406
GM+E+ + +HL+ + D E
Sbjct: 297 GMLESGIGRAHNIHLSTLSNFRLPGDTSSASRYWERDLIQEPLEAVD 343
|
| >2pmq_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, isomerase, PSI-2; HET: MSE; 1.72A {Roseovarius SP} Length = 377 | Back alignment and structure |
|---|
Score = 200 bits (512), Expect = 1e-60
Identities = 60/348 (17%), Positives = 134/348 (38%), Gaps = 22/348 (6%)
Query: 69 RAEGRELNVALS-APLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALV 127
+ + ++ + P + V ++ +++ +G +GWGE V +
Sbjct: 7 EIQLFQHDLPVVNGPYRIASGDVWSLTTTIVKIIAEDGTIGWGETCPVGPTYAEAHAGGA 66
Query: 128 K--VREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWR 185
+ L + L + +L G +A ++ +++A+ D + +P+
Sbjct: 67 LAALEVLASGLAGAEALPLP-LHTRMDSLLCGHNYA--KSALDIAVHDLWGKRLGVPVHE 123
Query: 186 LFGGAS-NSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRN-ITADFDVLQAI-- 241
L GGA +S+S+ ++ + P EA+ A + + G+S L++ +G I D + ++ +
Sbjct: 124 LLGGALTDSVSSYYSLGVMEPDEAARQALEKQREGYSRLQVKLGARPIEIDIEAIRKVWE 183
Query: 242 HAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARD 301
+ D N G+T+ +A+ + D+ + EQP + + L + R
Sbjct: 184 AVRGTGIALAADGNRGWTTRDALRFSRECPDIPF---VMEQPCN--SFEDLEAI----RP 234
Query: 302 TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMID 360
++ DE SLN V +L +K+++ G+ L D
Sbjct: 235 LCHHALYMDEDGTSLNTVITAAATSLVDGFGMKVSRIGGLQHMRAFRDFCAARNLPHTCD 294
Query: 361 GMIETRLATGFALHLAAGLG--CIKYVNLNTPFLLSEDPFVGGCEVSG 406
+ + H+A+ + ++ L P++ G + G
Sbjct: 295 DAWGGDIVSAACTHIASTVLPRLMEGAWLAQPYVAEHYDAENGVRIEG 342
|
| >3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia} Length = 400 | Back alignment and structure |
|---|
Score = 199 bits (508), Expect = 5e-60
Identities = 65/353 (18%), Positives = 128/353 (36%), Gaps = 36/353 (10%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTG---D 121
+ E+ + + P + + ++ + + G+GE A P G +
Sbjct: 9 IDGVSLYEIVIPMKIPFQISSGTCYTRRSLVVEIR-EGDLFGYGESAPFEEPFYLGETLE 67
Query: 122 QTKALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDI 181
TK ++K + P ++ I + G+ FA R GVE A D +A I
Sbjct: 68 TTKVILK-NHLLPMILGKEPLSIEEFNHLIKNGIRGNHFA--RCGVENAYWDLIAKKNKI 124
Query: 182 PLWRLFGGA-------------SNSLSTAITIPAVSPAEASEL---ASKYCKLGFSTLKL 225
L + +N + + + L + + G+ +K+
Sbjct: 125 SLKAMIEKKMKNLGVKQEYLASNNYIESGAALGIPEDGRIETLIHQVEESLQEGYRRIKI 184
Query: 226 NVGRNITADFDVLQAIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPV 284
+ D + LQ AV H DAN + ++ E ++ + EQP+
Sbjct: 185 KIKPG--WDVEPLQETRRAVGDHFPLWTDANSSFELDQW-ETFKAMDAAKC--LFHEQPL 239
Query: 285 HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGT 343
H + L ++ + + DES S + V + ++++ NIK+ + G+L
Sbjct: 240 HYEALLDLKEL----GERIETPICLDESLISSRVAEFVAKLGISNIWNIKIQRVGGLLEA 295
Query: 344 LQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSED 396
++I K +G+ L M E+ L F + LA+ G + ++
Sbjct: 296 IKIYKIATDNGIKLWGGTMPESGLGARFLISLASFRGFVFPADVAASEKWYGK 348
|
| >4e8g_A Enolase, mandelate racemase/muconate lactonizing enzyme, N domain protein; putative racemase, nysgrc, structural genomics, PSI-biology; 2.00A {Paracoccus denitrificans} Length = 391 | Back alignment and structure |
|---|
Score = 198 bits (506), Expect = 8e-60
Identities = 57/355 (16%), Positives = 124/355 (34%), Gaps = 29/355 (8%)
Query: 61 ETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTG 120
+ D+ + P ++ S+V +++ +++ +G GWGE V
Sbjct: 29 HVYAHDLPVKD---------GPYTIASSTVWSLQTTLVKIVADSGLAGWGETCPVGPTYA 79
Query: 121 DQTKALVK--VREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANS 178
+ + E L + P + +L G +A +A +++A D +
Sbjct: 80 PSHALGARAALAEMAPGLIGANPLQPLVLRRRMDGLLCGHNYA--KAAIDIAAYDLMGKH 137
Query: 179 IDIPLWRLFGGAS-NSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRN-ITADFD 236
+ + L GG + + + P E + +A++ GF L++ +G + D +
Sbjct: 138 YGVRVADLLGGVAAERVPSYYATGIGQPDEIARIAAEKVAEGFPRLQIKIGGRPVEIDIE 197
Query: 237 VLQAIHA--VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHD 294
++ + +D N S +A+ + + + IP + EQP + +
Sbjct: 198 TVRKVWERIRGTGTRLAVDGNRSLPSRDALRLSRECPE---IPFVLEQPC--NTLEEIAA 252
Query: 295 VSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKS 353
+ R + DES L+ V + + L +KL + G+
Sbjct: 253 I----RGRVQHGIYLDESGEDLSTVIRAAGQGLCDGFGMKLTRIGGLQQMAAFRDICEAR 308
Query: 354 GLHLMIDGMIETRLATGFALHLAAGLG--CIKYVNLNTPFLLSEDPFVGGCEVSG 406
L D + H+ A + + V + P++ G ++G
Sbjct: 309 ALPHSCDDAWGGDIIAAACTHIGATVQPRLNEGVWVAQPYIAQPYDEENGIRIAG 363
|
| >2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B Length = 378 | Back alignment and structure |
|---|
Score = 197 bits (503), Expect = 2e-59
Identities = 74/342 (21%), Positives = 124/342 (36%), Gaps = 21/342 (6%)
Query: 69 RAEGRELNVALSAP--LSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL 126
R L++ L+ P LS G + +++ +R++ G GWGE
Sbjct: 7 RLTVFHLDLPLAKPYWLSGGRLKFDRLDSTYLRIDTDEGVTGWGEGCPWGHSYLPAHGPG 66
Query: 127 VK--VREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLW 184
++ + L P +L+ + LPG + ++ ++MA D + +PLW
Sbjct: 67 LRAGIATLAPHLLGLDPRSLDHVNRVMDLQLPGHSYV--KSPIDMACWDILGQVAGLPLW 124
Query: 185 RLFGGAS-NSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVG-RNITADFDVLQAIH 242
+L GG + + +I +P + L ++ G+ T +G + D ++AI
Sbjct: 125 QLLGGEAATPVPINSSISTGTPDQMLGLIAEAAAQGYRTHSAKIGGSDPAQDIARIEAIS 184
Query: 243 -AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARD 301
+ D N +T AVEVL + EQP D V
Sbjct: 185 AGLPDGHRVTFDVNRAWTPAIAVEVLNSVRARD----WIEQPCQTLD--QCAHV----AR 234
Query: 302 TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMID 360
++ DE +D V IK + G+ QI G + I+
Sbjct: 235 RVANPIMLDECLHEFSDHLAAWSRGACEGVKIKPNRVGGLTRARQIRDFGVSVGWQMHIE 294
Query: 361 GMIETRLATGFALHLAAGLGCIKYVN-LNTPFLLSEDPFVGG 401
+ T LA ALHLAA + L++DP G
Sbjct: 295 DVGGTALADTAALHLAASTPEANRLASWLGHAHLADDPIPGQ 336
|
| >3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans} Length = 377 | Back alignment and structure |
|---|
Score = 195 bits (497), Expect = 2e-58
Identities = 71/348 (20%), Positives = 131/348 (37%), Gaps = 16/348 (4%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVEN-VENVAIRVELSNGCVGWGEVAVVPLVTGD-QTK 124
V+R + + G+ +V+ V+ V + V ++G VGWGE A + TG +
Sbjct: 8 VERIRIFLVESPIKMARLQGVGNVKGSVKRVLLEVTSADGIVGWGEAAPWEVFTGTPEAA 67
Query: 125 ALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLW 184
+ +P + + + ++L G A +A VEMAL+D + + + +
Sbjct: 68 FSALDIYLRPLILGAPIKRVRELMARMDKMLVGHGEA--KAAVEMALLDILGKATGLSVA 125
Query: 185 RLFGGASN-SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRN-ITADFDVLQAIH 242
L GG + + +I E G + K+ G + +L+ +
Sbjct: 126 DLLGGRVRDRIPLSFSIADPDFDADLERMRAMVPAGHTVFKMKTGVKPHAEELRILETMR 185
Query: 243 -AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARD 301
LD N+ T A+++L ++ P EQPV R +
Sbjct: 186 GEFGERIDLRLDFNQALTPFGAMKILRDVDAFR--PTFIEQPVPRRHLDAMAGF----AA 239
Query: 302 TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMID 360
++ADESC D+ +V++ A +++K+ K G++ ++ +GL
Sbjct: 240 ALDTPILADESCFDAVDLMEVVRRQAADAISVKIMKCGGLMKAQSLMAIADTAGLPGYGG 299
Query: 361 GMIETRLATGFALHLAAGLGCIKYVN-LNTPF-LLSEDPFVGGCEVSG 406
+ E +A L A I P +L+ED S
Sbjct: 300 TLWEGGIALAAGTQLIAATPGISLGCEFYMPHHVLTEDVLEERIANSA 347
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} Length = 379 | Back alignment and structure |
|---|
Score = 191 bits (487), Expect = 4e-57
Identities = 59/352 (16%), Positives = 121/352 (34%), Gaps = 25/352 (7%)
Query: 61 ETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTG 120
+ D+ +G A + ++ + ++ G G GE
Sbjct: 9 RLYKTDLPYVDGSYGWGAGN--------AITVARASVVVIDTDAGLQGCGEFTPCGENYM 60
Query: 121 DQTKALVKV--REACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANS 178
V R A L P + + ++ G +A +A + A D + +
Sbjct: 61 IAHSEGVDAFARLAAPQLLGQDPRQVARMERLMDHLVQGHGYA--KAPFDAAFWDILGQA 118
Query: 179 IDIPLWRLFGGASN-SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDV 237
P+W L GG P S AE +++ G+ ++ VG + +D D
Sbjct: 119 TGQPVWMLLGGKLCDGAPMYRVAPQRSEAETRAELARHRAAGYRQFQIKVGADWQSDIDR 178
Query: 238 LQAIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVS 296
++A + P + DAN+G+ + A+ + D+ + EQP + V
Sbjct: 179 IRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLD---YILEQPCRSYE--ECQQV- 232
Query: 297 NFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGL 355
R + DE L+ Q+++ + A + +K++ G+ + + +
Sbjct: 233 ---RRVADQPMKLDECVTGLHMAQRIVADRGAEICCLKISNLGGLSKARRTRDFLIDNRM 289
Query: 356 HLMIDGMIETRLATGFALHLAAGLGCIKYVN-LNTPFLLSEDPFVGGCEVSG 406
++ + +A+ H AA +N + + +GG V
Sbjct: 290 PVVAEDSWGGEIASAAVAHFAASTPEEFLINSTDLMNYNTRSTGLGGPTVHQ 341
|
| >3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural genomics, mandelate racemase/muconatelactonizing hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism} PDB: 2pce_A Length = 386 | Back alignment and structure |
|---|
Score = 191 bits (487), Expect = 4e-57
Identities = 60/357 (16%), Positives = 125/357 (35%), Gaps = 29/357 (8%)
Query: 61 ETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTG 120
+ D+ G G + + + +E G GWGE
Sbjct: 9 DIHRTDLPVRGGV--------YRLSGGREYHSYDATIVSIETDTGLTGWGESTPFGSTYI 60
Query: 121 DQTKALVKV--REACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANS 178
+ + P + D + L G A RA +++A D A +
Sbjct: 61 AAHAGGTRAALELLAPAILGMDPRQHDRIWDRMRDTLKGHRDA--RAALDIACWDIAAQA 118
Query: 179 IDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRN-----IT 232
+PL + GG + + +I +P +++ GF + +G +
Sbjct: 119 AGLPLCDMTGGRVAGPVPVISSIGGDTPEAMRAKVARHRAQGFKGHSIKIGASEAEGGPA 178
Query: 233 ADFDVLQAIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSG 291
D + + A P ++ DAN G T E A+ +L L ++ E P W+
Sbjct: 179 LDAERITACLADRQPGEWYLADANNGLTVEHALRMLSLLPPGL--DIVLEAPC--ASWAE 234
Query: 292 LHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKAT 350
+ R + ++ DE ++ D+ ++++L V +K++K G+ L+
Sbjct: 235 TKSL----RARCALPLLLDELIQTETDLIAAIRDDLCDGVGLKVSKQGGITPMLRQRAIA 290
Query: 351 RKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVN-LNTPFLLSEDPFVGGCEVSG 406
+G+ + + + ++++ LHLA L+T + + + +
Sbjct: 291 AAAGMVMSVQDTVGSQISFAAILHLAQSTPRHLLRCALDTRAMTTAELAEIDAPLRD 347
|
| >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} Length = 371 | Back alignment and structure |
|---|
Score = 190 bits (485), Expect = 6e-57
Identities = 63/352 (17%), Positives = 122/352 (34%), Gaps = 24/352 (6%)
Query: 61 ETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTG 120
+ F VD+ + G + + +R+ G GWGE
Sbjct: 10 DVFQVDLPYSGGV--------YYLSAGREYRSFDATIVRITTDTGIEGWGESTPFGSNYI 61
Query: 121 DQTKALVK--VREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANS 178
V+ + L P ++ D + L G E A + +++A D S
Sbjct: 62 ASHPRGVRAGIATMAPSLIGLDPRRVDRINDAMDDALLGHEDA--KTAIDVACWDIFGKS 119
Query: 179 IDIPLWRLFGGASN-SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDV 237
+ +P+ L GG +N L +I P + +KY G+ + + D
Sbjct: 120 VGLPVCELLGGRTNTRLPLISSIYVGEPEDMRARVAKYRAKGYKGQSVKISGEPVTDAKR 179
Query: 238 LQAIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVS 296
+ A P FI+DAN + E A+ +L L E P W +
Sbjct: 180 ITAALANQQPDEFFIVDANGKLSVETALRLLRLLPHGL--DFALEAPCA--TWRECISL- 234
Query: 297 NFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGL 355
R I ++ DE + + K++ ++ A +++K++K G+ + +G
Sbjct: 235 ---RRKTDIPIIYDELATNEMSIVKILADDAAEGIDLKISKAGGLTRGRRQRDICLAAGY 291
Query: 356 HLMIDGMIETRLATGFALHLAAGLGCIKYVN-LNTPFLLSEDPFVGGCEVSG 406
+ + + +A +HLA + L +++ G ++
Sbjct: 292 SVSVQETCGSDIAFAAIVHLAQTIPERSLRCILECRDMVTVKTADGAFDIQD 343
|
| >2okt_A OSB synthetase, O-succinylbenzoic acid synthetase; enolase, structural genom protein structure initiative, PSI, nysgrc; 1.30A {Staphylococcus aureus subsp} PDB: 2ola_A 3h70_A Length = 342 | Back alignment and structure |
|---|
Score = 188 bits (478), Expect = 4e-56
Identities = 50/318 (15%), Positives = 101/318 (31%), Gaps = 34/318 (10%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGD-QT 123
+ + + + + ++ + + + I + G +GE +
Sbjct: 4 LTALHFYKYSEPFKSQIVTPKVTLTHRDCLFIELIDDKGNAYFGECNAFQTDWYDHETIA 63
Query: 124 KALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPL 183
+ + + R T AL + + + RA + MAL +P
Sbjct: 64 SVKHVIEQWFEDNRNKSFETYEAALKLVDSLENTP---AARATIVMALYQMFHV---LPS 117
Query: 184 WRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHA 243
+ + G T +S + L + + +KL ++ +
Sbjct: 118 FSVAYG--------ATASGLSNKQLESLKAT----KPTRIKLKWTPQ---IMHQIRVLRE 162
Query: 244 VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTY 303
+ H ++DANE ++ + L L V + E+P D
Sbjct: 163 LDFHFQLVIDANESLDRQDFTQ-LQLLAREQV--LYIEEPFKDISMLDE------VADGT 213
Query: 304 GISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGM 362
+ DE SL D+ +++ VV +K + G + I + G ++I GM
Sbjct: 214 IPPIALDEKATSLLDIINLIELYNVKVVVLKPFRLGGIDKVQTAIDTLKSHGAKVVIGGM 273
Query: 363 IETRLATGFALHLAAGLG 380
E L+ F LA
Sbjct: 274 YEYGLSRYFTAMLARKGD 291
|
| >1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A {Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB: 1kd0_A* 3zvi_A 3zvh_A Length = 413 | Back alignment and structure |
|---|
Score = 179 bits (455), Expect = 4e-52
Identities = 60/386 (15%), Positives = 129/386 (33%), Gaps = 51/386 (13%)
Query: 62 TFWVDVQRA--EGRELNVAL--SAPLSLGLSSV-ENVENVAIRVELSNGCVGWGEVAVV- 115
F+ D QRA +G + + ++ G + V + E++++ + L +G V G+ A V
Sbjct: 14 GFYFDDQRAIKKGAGHDGFTYTGSTVTEGFTQVRQKGESISVLLVLEDGQVAHGDCAAVQ 73
Query: 116 --------PLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARILPGSEF--ASVRA 165
PL +++ +E L T +E ++ ++R
Sbjct: 74 YSGAGGRDPLFLAKDFIPVIE-KEIAPKLIGREITNFKPMAEEFDKMTVNGNRLHTAIRY 132
Query: 166 GVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIP--AVSPAEASELASK--------Y 215
G+ A++DAVA + + + + N + +P A S + + K
Sbjct: 133 GITQAILDAVAKTRKVTMAEVIRDEYNPGAEINAVPVFAQSGDDRYDNVDKMIIKEADVL 192
Query: 216 CKLGFSTLKLNVGRNITADFDVLQAI--------------HAVHPHCSFILDANEGYTSE 261
+ ++ +G + ++ + H + A +
Sbjct: 193 PHALINNVEEKLGLKGEKLLEYVKWLRDRIIKLRVREDYAPIFHIDVYGTIGAAFDVDIK 252
Query: 262 EAVEVLGKLNDMGV-IPVLFEQPVHRDDWSGLHD-----VSNFARDTYGISVVADESCRS 315
+ + L + + E P+ +D + + +VADE C +
Sbjct: 253 AMADYIQTLAEAAKPFHLRIEGPMDVEDRQKQMEAMRDLRAELDGRGVDAELVADEWCNT 312
Query: 316 LNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDG-MIETRLATGFAL 373
+ DV+ +V IK G V I + +G+ G ET +
Sbjct: 313 VEDVKFFTDNKAGHMVQIKTPDLGGVNNIADAIMYCKANGMGAYCGGTCNETNRSAEVTT 372
Query: 374 HLAAGLGCIKYVNLNTPFLLSEDPFV 399
++ G + L P + ++ +
Sbjct: 373 NIGMACGARQV--LAKPGMGVDEGMM 396
|
| >1r6w_A OSB synthase, O-succinylbenzoate synthase, OSBS; enolase superfamily, TIM barrel, capping alpha+beta domain, lyase; HET: 164; 1.62A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 PDB: 1fhv_A* 1fhu_A 2ofj_A 3gc2_A* Length = 322 | Back alignment and structure |
|---|
Score = 173 bits (441), Expect = 6e-51
Identities = 61/333 (18%), Positives = 108/333 (32%), Gaps = 38/333 (11%)
Query: 68 QRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALV 127
+ A+ + + A + L ++ + + + + GWGE++ +P + +
Sbjct: 4 RSAQVYRWQIPMDAGVVLRDRRLKTRDGLYVCLR-EGEREGWGEISPLPGFSQET----- 57
Query: 128 KVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLF 187
EA L + + +A + SV GV AL + +R
Sbjct: 58 -WEEAQSVLLA-------WVNNWLAGDCELPQMPSVAFGVSCALAELTDTLPQAANYR-- 107
Query: 188 GGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHP 246
A + P + + G K+ VG D V+ + P
Sbjct: 108 ---------AAPLCNGDPDDLILKLADM--PGEKVAKVRVGLYEAVRDGMVVNLLLEAIP 156
Query: 247 HCSFILDANEGYTSEEAVEVLGKLNDMGVIPV-LFEQPVHRDDWSGLHDVSNFARDTYGI 305
LDAN +T + + +N + E+P D S GI
Sbjct: 157 DLHLRLDANRAWTPLKGQQFAKYVNPDYRDRIAFLEEPCKTRDDSRA------FARETGI 210
Query: 306 SVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIE 364
++ DES R + + V IK G + + ++A GL +I IE
Sbjct: 211 AIAWDESLREPDFAFVAEE--GVRAVVIKPTLTGSLEKVREQVQAAHALGLTAVISSSIE 268
Query: 365 TRLATGFALHLAAGLGCIKYVNLNTPFLLSEDP 397
+ L +AA L L+T L+
Sbjct: 269 SSLGLTQLARIAAWLTPDTIPGLDTLDLMQAQQ 301
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} Length = 384 | Back alignment and structure |
|---|
Score = 173 bits (440), Expect = 4e-50
Identities = 71/336 (21%), Positives = 124/336 (36%), Gaps = 19/336 (5%)
Query: 75 LNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQ 134
L + L P E+ I +E +G VG GE V P TG + +
Sbjct: 14 LVLPLKQPYHWSYGIRESFAVNLIEIEADDGTVGIGECTVAPDQTG----TAAILYRLAK 69
Query: 135 FLRQSPPTTLNFALDEIARIL-------PGSEFASVRAGVEMALIDAVANSIDIPLWRLF 187
L P + + I + +G++MA+ D +P+ +L
Sbjct: 70 HLVGHSPHDVAPLIARIFHQEYLGHGANIMRAANQIFSGIDMAMWDLQGKLAGLPVHQLL 129
Query: 188 GGAS-NSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHP 246
GGA ++ + + E + A+ G L VGR D ++ A+
Sbjct: 130 GGAHRKAVGYFYFLQGETAEELARDAAVGHAQGERVFYLKVGRGEKLDLEITAAVRGEIG 189
Query: 247 HCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGIS 306
LDANEG++ +A+ + KL EQP + V R+ GI
Sbjct: 190 DARLRLDANEGWSVHDAINMCRKLEKYD--IEFIEQPTVSWSIPAMAHV----REKVGIP 243
Query: 307 VVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGMIET 365
+VAD++ +L DV ++ ++ A ++ I + G+ ++ +GL + I T
Sbjct: 244 IVADQAAFTLYDVYEICRQRAADMICIGPREIGGIQPMMKAAAVAEAAGLKICIHSSFTT 303
Query: 366 RLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGG 401
+ T H+ + + N L+ ED
Sbjct: 304 GITTCAEHHIGLAIPNLDDGNQIMWQLVQEDIVSSP 339
|
| >3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A* Length = 391 | Back alignment and structure |
|---|
Score = 167 bits (426), Expect = 5e-48
Identities = 55/327 (16%), Positives = 111/327 (33%), Gaps = 20/327 (6%)
Query: 94 ENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIAR 153
++V +++ G G GE++ + + L P L E+
Sbjct: 22 KHVIVKIHTDEGLTGIGEMSDFSHLPLYSVDLHDLKQGLLSILLGQNPFDLMKINKELTD 81
Query: 154 ILPGSEF-----ASVRAGVEMALIDAVANSIDIPLWRLFGGASN-SLSTAITI----PAV 203
P + + + +R G++ AL D A +DI + GG + I +
Sbjct: 82 NFPETMYYYEKGSFIRNGIDNALHDLCAKYLDISVSDFLGGRVKEKIKVCYPIFRHRFSE 141
Query: 204 SPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIH-AVHPHCSF-ILDANEGYTSE 261
++ + + GF +L VG+N+ AD + L + D + +
Sbjct: 142 EVESNLDVVRQKLEQGFDVFRLYVGKNLDADEEFLSRVKEEFGSRVRIKSYDFSHLLNWK 201
Query: 262 EAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQK 321
+A + +L + + E P R+D+ GL+ + E S Q+
Sbjct: 202 DAHRAIKRLTKYDLGLEMIESPAPRNDFDGLYQLRL------KTDYPISEHVWSFKQQQE 255
Query: 322 VMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLG 380
+++++ + NI G+ + A + +++ E + T HL L
Sbjct: 256 MIKKDAIDIFNISPVFIGGLTSAKKAAYAAEVASKDVVLGTTQELSVGTAAMAHLGCSLT 315
Query: 381 CIKYV-NLNTPFLLSEDPFVGGCEVSG 406
I + + P L D
Sbjct: 316 NINHTSDPTGPELYVGDVVKNRVTYKD 342
|
| >3caw_A O-succinylbenzoate synthase; structural genomics, PSI-2, NYSGXRC, target 9462A, protein structure initiative; 1.87A {Bdellovibrio bacteriovorus HD100} Length = 330 | Back alignment and structure |
|---|
Score = 161 bits (408), Expect = 4e-46
Identities = 56/357 (15%), Positives = 107/357 (29%), Gaps = 52/357 (14%)
Query: 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVT-GDQTKALV 127
+ + L+ ++ E V ++VE ++G G+ ++ P GD +
Sbjct: 3 KISYSPYTLKPVQSLNAATAATA-REGVLLKVEWNDGLYGFADLH--PWPELGDLS---- 55
Query: 128 KVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLF 187
+ E LR TT + + +A DA+ ++
Sbjct: 56 -LEEQLSDLRMGRMTT------------------QIEQSIWLARRDALLRKEKKHVFDGG 96
Query: 188 GGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPH 247
+ + L G++T+K+ +GR++ + D+L I A
Sbjct: 97 EKIK----NNYLLSHFQDLKPGFLDGLK-NEGYNTVKVKMGRDLQKEADMLTHIAA--SG 149
Query: 248 CSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF-EQPVHRDDWSGLHDVSNFARDTYGIS 306
LD N + + + + L + + E P D H +
Sbjct: 150 MRMRLDFNALGSWQTFEKFMVNLPLTVRPLIEYVEDPFPFDF----HAWGEARKL---AK 202
Query: 307 VVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIETR 366
+ D + + V+ IK AK + + +K L L + ++
Sbjct: 203 IALDNQYDKVPWG--KIASAPFDVIVIKPAK---TDVDKAVAQCQKWNLKLAVTSYMDHP 257
Query: 367 LATGFALHLAAGL-----GCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQG 418
+ A+ +A L I T L D F G G G
Sbjct: 258 VGVVHAVGVAMELKDKYGDMILESGCLTHRLYQMDSFAAELSTQGPYLLKNKGTGVG 314
|
| >2opj_A O-succinylbenzoate-COA synthase; TIM barrel, structural genomics, protein structure initiative; 1.60A {Thermobifida fusca} PDB: 2qvh_A* Length = 327 | Back alignment and structure |
|---|
Score = 156 bits (395), Expect = 3e-44
Identities = 57/259 (22%), Positives = 97/259 (37%), Gaps = 21/259 (8%)
Query: 150 EIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEAS 209
E + P +E+ E A A + +++ T+PAV P EA+
Sbjct: 35 EFS---PFAEYG----PRECARWWAAC--YEAAELGWPAPVRDTVPVNATVPAVGPEEAA 85
Query: 210 ELASKYCKLGFSTLKLNVGRNITADFDVLQAIH-AVHPHCSFILDANEGYTSEEAVEVLG 268
+ + G++ D ++A+ A+ P +D N + + AV ++
Sbjct: 86 RIVASSGCTTAKVKVAERGQSEANDVARVEAVRDALGPRGRVRIDVNGAWDVDTAVRMIR 145
Query: 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLA 328
L+ + EQP D L +V R + + ADES R D +V A
Sbjct: 146 LLDRFEL--EYVEQPCATVD--ELAEV----RRRVSVPIAADESIRRAEDPLRVRDAEAA 197
Query: 329 SVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVN-L 387
VV +K+ G G ++ + GL +++ +ET + + LAA L + Y L
Sbjct: 198 DVVVLKVQPLG--GVRAALRLAEECGLPVVVSSAVETSVGLAAGVALAAALPELPYACGL 255
Query: 388 NTPFLLSEDPFVGGCEVSG 406
T LL D
Sbjct: 256 ATLRLLHADVCDDPLLPVH 274
|
| >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti} Length = 389 | Back alignment and structure |
|---|
Score = 145 bits (369), Expect = 7e-40
Identities = 59/338 (17%), Positives = 122/338 (36%), Gaps = 21/338 (6%)
Query: 75 LNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQ--TKALVKVREA 132
A + ++V A+ + +G VG G + + DQ +++ + E
Sbjct: 13 FQFARDRVIGDSQVRADDVNVAALELVSESGEVGLGFIQTLFNPLPDQQEIESVFE-HEV 71
Query: 133 CQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASN 192
L+ + L ++ + V++AL D A +PL L G N
Sbjct: 72 WPSLKGNRAIALVHRVNRPRGGNQRAYSLPFHEAVQVALWDLAAKEAGLPLHVLLGSRRN 131
Query: 193 SLSTAITI--PAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIH-AVHPHC 248
+ + + L S +G+S K+ VG + D L+ + V
Sbjct: 132 RVKAYASGLDFHLDDDAFVSLFSHAASIGYSAFKIKVGHRDFDRDLRRLELLKTCVPAGS 191
Query: 249 SFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVV 308
++D NE +TS+EA+ L + + G + E P+ R D GL + R + +
Sbjct: 192 KVMIDPNEAWTSKEALTKLVAIREAGHDLLWVEDPILRHDHDGLRTL----RHAVTWTQI 247
Query: 309 ADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIETRLA 368
L + +++ + A ++N+ V ++I + G+ + I
Sbjct: 248 NSGEYLDLQGKRLLLEAHAADILNV---HGQVTDVMRIGWLAAELGIPISIGNT-----F 299
Query: 369 TGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSG 406
+H+A L ++++ + + E+
Sbjct: 300 LEAGVHMAVALPEVEWLEYSFQNF--DHLVEQPIEIRD 335
|
| >4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A Length = 398 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 2e-39
Identities = 64/360 (17%), Positives = 122/360 (33%), Gaps = 40/360 (11%)
Query: 61 ETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTG 120
+ + V++ L P + + +RV +G GWGE + G
Sbjct: 30 DVWVVNLP----------LVNPFTSSFETKTGETRTVVRVRTDSGVEGWGET-----MWG 74
Query: 121 DQTKALVKVREACQFLRQSPPTTLNFALDEIARILP--GSEFASVRAGVEMALIDAVANS 178
A+V R L + P L + + G + A V++A DA+ +
Sbjct: 75 APVAAIV--RRMAPDLIGTSPFALEAFHRKQHMVPFFYGYLGYAAIAAVDVACWDAMGKA 132
Query: 179 IDIPLWRLFGGASN----------SLSTAITIPAVSPAEASELASKYCK-LGFSTLKLNV 227
+ L GGA PA P +E A + + GF +KL
Sbjct: 133 TGQSVTDLLGGAVRDEVPITALITRADAPGATPADLPKAMAEHAVRVVEEGGFDAVKLKG 192
Query: 228 GRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRD 287
+ D +L+A+ P + +D N ++ ++V L ++ E P
Sbjct: 193 TTDCAGDVAILRAVREALPGVNLRVDPNAAWSVPDSVRAGIALEELD--LEYLEDPCV-- 248
Query: 288 DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQI 346
G+ V + I + + D M+ N V++ + K+ G+ T +
Sbjct: 249 GIEGMAQV----KAKVRIPLCTNMCVVRFEDFAPAMRLNAVDVIHGDVYKWGGIAATKAL 304
Query: 347 IKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSG 406
GL + + E +AT L + + + +++ + L D + +
Sbjct: 305 AAHCETFGLGMNLHSGGELGIATAAHLAVVSSTPVLSRA-IDSMYYLHADDIIEPLHLEN 363
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A Length = 359 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 1e-37
Identities = 67/339 (19%), Positives = 124/339 (36%), Gaps = 23/339 (6%)
Query: 73 RELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREA 132
R +NV L+ P+ + +V V I + S G VG + V K L+ +
Sbjct: 12 RAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFAYTPVALKSLKQLLD--DM 69
Query: 133 CQFLRQSP--PTTLNFALDEIARIL-PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189
+ P P +L L + + AG++MA DA+ + PL +L G
Sbjct: 70 AAMIVNEPLAPVSLEAMLAKRFCLAGYTGLIRMAAAGIDMAAWDALGKVHETPLVKLLGA 129
Query: 190 ASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAI-HAVHPH 247
+ + + A+E A +LGF +K +G + D V+++I AV
Sbjct: 130 NARPVQAYDSHSLDGVKLATERAVTAAELGFRAVKTRIGYPALDQDLAVVRSIRQAVGDD 189
Query: 248 CSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISV 307
++D N+ A++ L G E+P + D+ G + + + V
Sbjct: 190 FGIMVDYNQSLDVPAAIKRSQALQQEG--VTWIEEPTLQHDYEGHQRI----QSKLNVPV 243
Query: 308 VADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGMIETR 366
E+ ++ K + + K GV G ++ ++ G+ + E
Sbjct: 244 QMGENWLGPEEMFKALSIGACRLAMPDAMKIGGVTGWIRASALAQQFGIPMSSHLFQE-- 301
Query: 367 LATGFALHLAAGL---GCIKYVNLNTPFLLSEDPFVGGC 402
+ HL A ++ ++L + F GG
Sbjct: 302 ----ISAHLLAATPTAHWLERLDLAGSVIEPTLTFEGGN 336
|
| >3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica} Length = 392 | Back alignment and structure |
|---|
Score = 137 bits (346), Expect = 1e-36
Identities = 63/324 (19%), Positives = 116/324 (35%), Gaps = 28/324 (8%)
Query: 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGE-VAVVPLVTGDQTKALV 127
R +S P+ ++ + V + VE S+G VGWGE P + LV
Sbjct: 14 RVRAHVFRYPVSTPVKTSFGTMHDRPAVLVEVEDSDGAVGWGEVWCNFPACGAEHRARLV 73
Query: 128 KVREACQFLRQSP--PTTLNFALDEIARIL-----PGSEFASVRAGVEMALIDAVANSID 180
+ A ++ P L+ +L A AG+++AL D A
Sbjct: 74 ETVLAPLLTARAFADPAQAFAHLEARTAVLAIQTGEPGPLAQAIAGLDIALCDLAARRAG 133
Query: 181 IPLWRLFGGASNSLSTAITIPA----VSPAEASELASKYCKLGFSTLKLNVGRNITADFD 236
PLW GG+ + I ++P ++ ++ G+ KL VG + D
Sbjct: 134 QPLWAWLGGSGDR------IGVYASGINPENPEDVVARKAAEGYRAFKLKVGFDDARDVR 187
Query: 237 VLQAI-HAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLH-D 294
+ + + DAN+G+ A ++ +L E+P+ D + +
Sbjct: 188 NALHVRELLGAATPLMADANQGWDLPRARQMAQRLGPAQ--LDWLEEPLRADRPAAEWAE 245
Query: 295 VSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKS 353
+ + + E+ + + + V+ LAK+ G G L + +A +
Sbjct: 246 L----AQAAPMPLAGGENIAGVAAFETALAARSLRVMQPDLAKWGGFSGCLPVARAVVAA 301
Query: 354 GLHLMIDGMIETRLATGFALHLAA 377
GL + + + HL A
Sbjct: 302 GL-RYCPHYLGAGIGLQASAHLLA 324
|
| >1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel; 1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1 PDB: 1kkr_A* Length = 413 | Back alignment and structure |
|---|
Score = 134 bits (338), Expect = 2e-35
Identities = 64/362 (17%), Positives = 114/362 (31%), Gaps = 49/362 (13%)
Query: 63 FWVDVQRA--EGRELNVAL--SAPLSLGLSSV-ENVENVAIRVELSNGCVGWGEVAVV-- 115
F+ D Q+A G + + P++ G +SV + E V++++ L NG V G+ A V
Sbjct: 15 FYFDDQQAIKNGAGHDGFIYTGDPVTPGFTSVRQAGECVSVQLILENGAVAVGDCAAVQY 74
Query: 116 -------PLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFA--SVRAG 166
PL + + L ++ +VR G
Sbjct: 75 SGAGGRDPLFLAEHFIPFLN-DHIKPLLEGRDVDAFLPNARFFDKLRIDGNLLHTAVRYG 133
Query: 167 VEMALIDAVANSIDIPLWRLFGGASNSLSTAITIP--AVSPAEASELASKYCKLG----- 219
+ AL+DA A + + IP S + K G
Sbjct: 134 LSQALLDATALASGRLKTEVVCDEWQLPCVPEAIPLFGQSGDDRYIAVDKMILKGVDVLP 193
Query: 220 ---FSTLKLNVGRNITADFD--------VLQAIHAVHPHCSFILDA------NEGYTSEE 262
+ ++ +G + +L + H + +D
Sbjct: 194 HALINNVEEKLGFKGEKLREYVRWLSDRILSLRSSPRYHPTLHIDVYGTIGLIFDMDPVR 253
Query: 263 AVEVLGKLNDMGV-IPVLFEQPVHRDD----WSGLHDV-SNFARDTYGISVVADESCRSL 316
E + L +P+ E PV + L + R G+ +VADE C +
Sbjct: 254 CAEYIASLEKEAQGLPLYIEGPVDAGNKPDQIRMLTAITKELTRLGSGVKIVADEWCNTY 313
Query: 317 NDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDG-MIETRLATGFALH 374
D+ +V IK G + + + K G+ G ET ++ +H
Sbjct: 314 QDIVDFTDAGSCHMVQIKTPDLGGIHNIVDAVLYCNKHGMEAYQGGTCNETEISARTCVH 373
Query: 375 LA 376
+A
Sbjct: 374 VA 375
|
| >3vc5_A Mandelate racemase/muconate lactonizing protein; dehydratase, magnesium binding, enzyme function initiative, enolase, isomerase; 1.50A {Thermobispora bispora} PDB: 3vc6_A 4dhg_A Length = 441 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 4e-30
Identities = 60/359 (16%), Positives = 108/359 (30%), Gaps = 43/359 (11%)
Query: 75 LNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEV-----------AVVPLVTGDQT 123
+ L+ + V G G GE A + G
Sbjct: 33 VAFRDPPLLNAAGVHQPWALRTIVEVVTDEGITGLGETYGDLAHLEQVRAAAARLPGLDV 92
Query: 124 KALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPL 183
AL ++ + + T L + + V A E+A +D + P+
Sbjct: 93 YALHRIYRRVADVVGANIVTDMHGLTGSSSRVKT--VDRVFAAFEVACLDIQGKAAGRPV 150
Query: 184 WRLFGGASN-----------------SLSTAITIPAVSPAEASELASKYCK-LGFSTLKL 225
L GG PA+ P A GF ++KL
Sbjct: 151 ADLLGGKVRDAVPYSAYLFYKWAGHPGKPEDRFGPALDPDGIVAQARLLIGEYGFRSIKL 210
Query: 226 NVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPV 284
G + + +QA+ P LD N +T E ++ V L+ + E P
Sbjct: 211 KGGVFPPEQEAEAIQALRDAFPGLPLRLDPNAAWTVETSIRVGRALDG---VLEYLEDPT 267
Query: 285 HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGT 343
D G+ V A + + + + + + ++ V+ I + G++ +
Sbjct: 268 PGID--GMARV---AAEV-PMPLATNMCVVTPEHLPAAVERRPIGVLLIDHHYWGGLVRS 321
Query: 344 LQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGL-GCIKYVNLNTPFLLSEDPFVGG 401
I G+ L + ++ HLAA + +TP+ +D G
Sbjct: 322 AHIATLCATFGIELSMHSNSHLGISLAAMTHLAAATPAITHACDTHTPWQDGQDVVAPG 380
|
| >3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199} Length = 390 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 1e-29
Identities = 62/288 (21%), Positives = 120/288 (41%), Gaps = 20/288 (6%)
Query: 71 EGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVR 130
R + + L P++ ++++ + + I +E G G + P V + +
Sbjct: 34 TARPVLLKLQRPVTARIATIPDWPLILIDIETEEGVPGRAYLE--PYVPKAMKYLVPALH 91
Query: 131 EACQFLRQSP--PTTLNFALDEIARIL-PGSEFASVRAGVEMALIDAVANSIDIPLWRLF 187
+ L P P + + + +GV+MA+ DA+A + ++PL L
Sbjct: 92 DMSDMLAGQPLAPAEIYDKTRKSLHFVGYAGLSMIAASGVDMAVWDALARAANMPLCTLL 151
Query: 188 GGASNSLSTAITI------PAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQA 240
GG S+ + PA AEA EL ++ GF LKL +GR + D + +A
Sbjct: 152 GGTPGSVKAYNSNGLWLKSPAEVAAEAVELKAEGQGTGFKGLKLRMGRDDPAVDIETAEA 211
Query: 241 I-HAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFA 299
+ AV + ++D N+G EA+ +++D+G E+PV D++ G +
Sbjct: 212 VWDAVGRDTALMVDFNQGLDMAEAMHRTRQIDDLG--LEWIEEPVVYDNFDGYAQL---- 265
Query: 300 RDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQI 346
R ++ E+ ++ + +Q +V + GV G ++
Sbjct: 266 RHDLKTPLMIGENFYGPREMHQALQAGACDLVMPDFMRIGGVSGWMRA 313
|
| >3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A* Length = 383 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 1e-29
Identities = 54/279 (19%), Positives = 106/279 (37%), Gaps = 15/279 (5%)
Query: 75 LNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQ 134
+ + PL +++ V I V G G + + LV+ + +
Sbjct: 37 VITPMKRPLRNAFGVIDSGPLVLIDVTTDQGVTGHSYLFAYTRLALKPLVHLVE--DIGR 94
Query: 135 FLR-QSP-PTTLNFALDEIARIL-PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGAS 191
L ++ P L A+D R+L +G++MA DA+ P+ L GG++
Sbjct: 95 ELAGKALVPVDLMKAMDAKFRLLGWQGLVGMAVSGLDMAFWDALGQLAGKPVVELLGGSA 154
Query: 192 NSLST-AITIPAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAI-HAVHPHC 248
+ + + L + + GF +K G ++ D +++ + + P
Sbjct: 155 RPIPAYDSYGVLDARDDERTLRTACDEHGFRAIKSKGGHGDLATDEAMIKGLRALLGPDI 214
Query: 249 SFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVV 308
+ +LD N+ EA + +L D E+PV +++ SG V R+ I +
Sbjct: 215 ALMLDFNQSLDPAEATRRIARLADYD--LTWIEEPVPQENLSGHAAV----RERSEIPIQ 268
Query: 309 ADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQI 346
A E+ + + + + L K G+ G L +
Sbjct: 269 AGENWWFPRGFAEAIAAGASDFIMPDLMKVGGITGWLNV 307
|
| >3vdg_A Probable glucarate dehydratase; enolase, magnesium binding site, lyase; 1.90A {Mycobacterium smegmatis str} PDB: 3vfc_A* Length = 445 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 3e-26
Identities = 56/316 (17%), Positives = 99/316 (31%), Gaps = 52/316 (16%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARILPG 157
I+++ G G GE + ++ A + + N I+ L G
Sbjct: 61 IQLDTDAGLTGLGETYADTVHLER-------LQAAAHAIVGRSVFSTNVIRALISDALGG 113
Query: 158 SEFA----------------SVRAGVEMALIDAVANSIDIPLWRLFGGA----------- 190
V + E+A +D P+ L GGA
Sbjct: 114 DRTGDGSGLAGMITSASVVDRVFSPFEVACLDVQGQVTGRPVSDLLGGAVRDAVPFSAYL 173
Query: 191 ------SNSLSTAITIPAVSPAEASELASKYCK-LGFSTLKLNVGRN-ITADFDVLQAIH 242
A+ P A + GFS +KL G + ++A+
Sbjct: 174 FYKWAAHPGAEPDGWGAALDPDGIVAQARRMIDEYGFSAIKLKGGVFAPEEEMAAVEALR 233
Query: 243 AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDT 302
A P LD N +T + +V+V L V+ E P D G+ +V A
Sbjct: 234 AAFPDHPLRLDPNAAWTPQTSVKVAAGLEG--VLE-YLEDPTPGLD--GMAEV---AAQA 285
Query: 303 YGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDG 361
+ + + + + + + +N VV + G+ + + GL L +
Sbjct: 286 -PMPLATNMCVVAFDQLPAAVAKNSVQVVLSDHHYWGGLQRSRLLAGICDTFGLGLSMHS 344
Query: 362 MIETRLATGFALHLAA 377
++ +HLAA
Sbjct: 345 NSHLGISLAAMVHLAA 360
|
| >3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP} Length = 428 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 9e-25
Identities = 62/329 (18%), Positives = 124/329 (37%), Gaps = 37/329 (11%)
Query: 34 FCVSNVMAETTTVRTSERTSLGFKNLT--ETFWVDVQRAEGRELNVALSAPLSLGLSSVE 91
F S + + T K +T + + +++G+ S
Sbjct: 17 FAASGRITLSIKRFTQNSRRHDMK-ITKINAIPLSY--------RLPEGKTVTMGVGSTI 67
Query: 92 NVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEI 151
+ + IRVE S G G+GE P + +L+ A +
Sbjct: 68 KRDAIIIRVETSEGITGYGE--AHPGRSPGAITSLIHNTIAPMLIGMKA-----TDCVGA 120
Query: 152 ARILPGSEFASVR---------AGVEMALIDAVANSIDIPLWRLFGGASNSL---STAIT 199
+ + + +S +G++MAL D + ++PL+ L GG+ + + I
Sbjct: 121 WQRVHRMQLSSHGLGAGAALAISGIDMALWDIRGKAANMPLYELLGGSKRRIPAYAGGIA 180
Query: 200 IPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAI-HAVHPHCSFILDANEGY 258
+ +E A +Y G+ LKL +G D + ++ + + + DAN Y
Sbjct: 181 LGYQPKESLAEEAQEYIARGYKALKLRIGDAARVDIERVRHVRKVLGDEVDILTDANTAY 240
Query: 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLND 318
T +A VL L ++ E+P +D++ +V A+ T + + A E+ + +
Sbjct: 241 TMADARRVLPVLAEIQ--AGWLEEPFACNDFASYREV---AKITPLVPIAAGENHYTRFE 295
Query: 319 VQKVMQENLASVVNIKLAKF-GVLGTLQI 346
+++ V L+K G+ ++I
Sbjct: 296 FGQMLDAGAVQVWQPDLSKCGGITEGIRI 324
|
| >1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A* Length = 392 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 6e-24
Identities = 65/366 (17%), Positives = 119/366 (32%), Gaps = 55/366 (15%)
Query: 73 RELNVALSAPLSLGLSSVENVENVAIRVE-----LSNGCVGWGEVAVVPLVTGDQTKALV 127
RE+ +S+P+ + + V VG+G + G L+
Sbjct: 12 REITKPISSPIRNAYIDFTKMTTSLVAVVTDVVREGKRVVGYGFNSNGRYGQG----GLI 67
Query: 128 KVREACQFLRQSPPTTLNFALDEI----------ARILPGSEFASVRA--GVEMALIDAV 175
+ R A + L P LN A D + PG A ++MA+ DAV
Sbjct: 68 RERFASRILEADPKKLLNEAGDNLDPDKVWAAMMINEKPGGHGERSVAVGTIDMAVWDAV 127
Query: 176 ANSIDIPLWRLFGGASNSL---------STAITIPAVSPAEASELASKYCKLGFSTLKLN 226
A PL+RL + P + Y G++ +K+
Sbjct: 128 AKIAGKPLFRLLAERHGVKANPRVFVYAAGGYYYPGKGLSMLRGEMRGYLDRGYNVVKMK 187
Query: 227 VGR-NITADFDVLQAI-HAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPV 284
+G I D ++A+ + +DAN + E + L D +E+
Sbjct: 188 IGGAPIEEDRMRIEAVLEEIGKDAQLAVDANGRFNLETGIAYAKMLRDYP--LFWYEEVG 245
Query: 285 HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQEN----LASVVNIKLAKF-G 339
D++ + + Y + E+ S D + +++ + A G
Sbjct: 246 DPLDYALQAAL----AEFYPGPMATGENLFSHQDARNLLRYGGMRPDRDWLQFDCALSYG 301
Query: 340 VLGTLQIIKATRKSGLHLMID---GMIETRLATGFALHLAAGLG---CIKYVNLNTPFLL 393
+ + ++ + G G + +L++AAGLG Y +L P+
Sbjct: 302 LCEYQRTLEVLKTHGWSPSRCIPHGGHQ------MSLNIAAGLGLGGNESYPDLFQPYGG 355
Query: 394 SEDPFV 399
D
Sbjct: 356 FPDGVR 361
|
| >3no1_A Isomerase, mandelate racemase/muconate lactonizing enzyme; enolase,metal-binding,PSI-II, NYSGXRC, structural genomics; 2.16A {Marine actinobacterium} PDB: 3msy_A Length = 398 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 7e-24
Identities = 59/291 (20%), Positives = 104/291 (35%), Gaps = 27/291 (9%)
Query: 71 EGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVR 130
E + L+ + + + RV G +G T ++
Sbjct: 28 ETIPMVAPLAREFRGSHYHMTHRATIVTRVHTDAGIIGEAY-TGDEHETMFDIDRIIHEE 86
Query: 131 EACQFLRQSPPTTLNFALDEIARILPGSEFASVR---------AGVEMALIDAVANSIDI 181
A + Q A++ + F +R A V A+ DAV ++ +
Sbjct: 87 LAPTLIGQDA-----MAIERLWDSGYKVTFDILRDRRLGLVALAAVNTAIWDAVGKALKM 141
Query: 182 PLWRLFGGASNSLSTAITI--PAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVL 238
PLW+L+GG N L ++ Y +LG + +K VG + D +
Sbjct: 142 PLWKLWGGYRNELPMIAIGGYYGEPLGSIADEMHNYQELGLAGVKFKVGGLSAAEDAARI 201
Query: 239 QAI-HAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVH-RDDWSGLHDVS 296
A A +DAN+GY AV++ ++ D+ FE+PV +D + DV
Sbjct: 202 TAAREAAGDDFIICIDANQGYKPAVAVDLSRRIADLN--IRWFEEPVEWHNDKRSMRDV- 258
Query: 297 NFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQI 346
R + V A ++ S + + +M+ V N + G L+
Sbjct: 259 ---RYQGSVPVCAGQTEFSASGCRDLMETGAIDVCNFDSSWSGGPTAWLRT 306
|
| >3p0w_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, protein structure initiative; HET: GKR; 1.71A {Ralstonia pickettii} PDB: 3nxl_A Length = 470 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 8e-24
Identities = 63/361 (17%), Positives = 121/361 (33%), Gaps = 61/361 (16%)
Query: 98 IRVELSNGCVGWGEV-----------AVVPLVTG----DQTKALVKVREACQFLRQS--- 139
+ ++ + G G GEV V+PLV G L +R A +
Sbjct: 41 VILKDNAGRTGVGEVPGGEGIRQALERVIPLVVGQSIGRTNGVLSSIRRALAGGGNAAHQ 100
Query: 140 ----PPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG------ 189
T+ + A +V VE AL+D + +++P+ L G
Sbjct: 101 ATVHQVTSASEAAVLRQPHEINLRMDNVITAVEAALLDLLGQFLEVPVAELLGAGQQRDS 160
Query: 190 -------------------------ASNSLSTAITIPAVSPAEASELASKYC-KLGFSTL 223
++ A++PA + LA + GF+
Sbjct: 161 APMLAYLFYVGDRRKTDLPYLEGANGADDWLRLRHEAAMTPAAIARLAEAATERYGFADF 220
Query: 224 KLNVGRNITA-DFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQ 282
KL G A + + + AI A PH LD N ++ EA+ + + E
Sbjct: 221 KLKGGVMPGAEEMEAIAAIKARFPHARVTLDPNGAWSLNEAIALCKGQGH---LVAYAED 277
Query: 283 PVHRDD-WSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVL 341
P + +SG ++ F R T GI + + +Q + + + +
Sbjct: 278 PCGPEAGYSGREVMAEFKRAT-GIPTATNMIATDWRQMGHAVQLHAVDIPLADPHFWTMQ 336
Query: 342 GTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGL-GCIKYVNLNTPFLLSEDPFVG 400
G++++ + + GL ++ H+AA G I ++ + + +++
Sbjct: 337 GSVRVAQLCDEWGLTWGSHSNNHFDVSLAMFTHVAAAAPGNITAIDTHWIWQEAQERLTR 396
Query: 401 G 401
Sbjct: 397 E 397
|
| >2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A Length = 382 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 1e-23
Identities = 55/329 (16%), Positives = 102/329 (31%), Gaps = 47/329 (14%)
Query: 71 EGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVR 130
E L L P IR+ +G GWGE + +
Sbjct: 10 ETFPLFHRLEKPYGDANGFKRYRTCYLIRIITESGIDGWGE----CVDWLPALHVGF-TK 64
Query: 131 EACQFLR-QSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189
FL + + + R + + V MAL + A + D + L+GG
Sbjct: 65 RIIPFLLGKQA-----GSRLSLVRTIQKW-HQRAASAVSMALTEIAAKAADCSVCELWGG 118
Query: 190 ASNSLSTAITIPA-----------VSPAEASELASKYCKLGFSTLKLNVGR-NITADFDV 237
IP + + K GF +K+ +G + D
Sbjct: 119 RYRE-----EIPVYASFQSYSDSPQWISRSVSNVEAQLKKGFEQIKVKIGGTSFKEDVRH 173
Query: 238 LQAI-HAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF-EQPVHRDDWSGLHDV 295
+ A+ H + ILDAN+ Y + A + ++ + + E+P+ D +
Sbjct: 174 INALQHTAGSSITMILDANQSYDAAAAFKWERYFSEW--TNIGWLEEPLPFDQPQDYAML 231
Query: 296 SNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSG 354
R + V E+ + ++ + ++ + G+ ++ R G
Sbjct: 232 ----RSRLSVPVAGGENMKGPAQYVPLLSQRCLDIIQPDVMHVNGIDEFRDCLQLARYFG 287
Query: 355 L----HLMIDGMIETRLATGFALHLAAGL 379
+ H L+ +AL A L
Sbjct: 288 VRASAHAYDGS-----LSRLYALFAQACL 311
|
| >3va8_A Probable dehydratase; enolase, magnesium binding site, lyase; 2.00A {Gibberella zeae} Length = 445 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 49/316 (15%), Positives = 96/316 (30%), Gaps = 53/316 (16%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIAR---- 153
I + + G GE + ++A ++ + N
Sbjct: 60 IEIITEDS-YGLGES-----YGDSAHLDRL--QKAADKIKGLSVYSTNVIYQRCVESLRN 111
Query: 154 ------------ILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASN--------- 192
++ S V + E+A +D I + L GG
Sbjct: 112 DTNTGGDGMGGMVVTASVADKVFSPFEVACLDLQGKLAGISVSDLLGGRVRDSVQYSAYL 171
Query: 193 --------SLSTAITIPAVSPAEASELASKYCK-LGFSTLKLNVGR-NITADFDVLQAIH 242
PA+ P + A K GF +KL G + ++A+H
Sbjct: 172 FYKWGGHPGDEDDEYGPALDPEGVVKQAKKIIDEYGFKAIKLKGGVFPPADEVAAIKALH 231
Query: 243 AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDT 302
P LD N +T E + V +L I E P + G+ V A++
Sbjct: 232 KAFPGVPLRLDPNAAWTVETSKWVAKELEG---IVEYLEDPA--GEIEGMAAV---AKEA 283
Query: 303 YGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDG 361
+ + + + + + + + ++ V+ + G+ + + GL L +
Sbjct: 284 -SMPLATNMAVVAFDHLPPSILQDAVQVILSDHHFWGGLRKSQTLASICATWGLRLSMHS 342
Query: 362 MIETRLATGFALHLAA 377
++ HLA+
Sbjct: 343 NSHLGISLAAMTHLAS 358
|
| >4g8t_A Glucarate dehydratase; enolase, enzyme function INI EFI, structural genomics, lyase; 1.70A {Actinobacillus succinogenes} PDB: 1ec7_A 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A* 3pwi_A* 1jct_A* 3pwg_A* 1bqg_A Length = 464 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 4e-23
Identities = 46/349 (13%), Positives = 105/349 (30%), Gaps = 56/349 (16%)
Query: 75 LNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQ 134
+ S L+L + + ++ ++G G GEV G++ + + +A
Sbjct: 36 VAGHDSMLLNLSGAHSPYFTRNIVILKDNSGNTGVGEV-----PGGEKIRQTL--EDAKP 88
Query: 135 FLRQSPPTTLNFALDEIARIL-------------PGSEFASVRAGVEMALIDAVANSIDI 181
+ ++ + + V +E A++D + + +
Sbjct: 89 LVIGKTLGEYKNVMNTVRQTFNDHDAGGRGLQTFDLRTTIHVVTAIEAAMLDLLGQFLGV 148
Query: 182 PLWRLFGG-------------------------------ASNSLSTAITIPAVSPAEASE 210
+ L G A++P
Sbjct: 149 TVASLLGDGQQRDAVEMLGYLFFIGDRKKTTLAYQNQENDPCDWYRVRHEEAMTPESVVR 208
Query: 211 LASK-YCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLG 268
LA Y K GF+ KL G + + + + A+ P LD N ++ +EAV++
Sbjct: 209 LAEAAYEKYGFNDFKLKGGVLDGFEEAEAVTALAKRFPDARITLDPNGAWSLDEAVKIGK 268
Query: 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLA 328
+L + E P + ++ R G+ + + +
Sbjct: 269 QLKG---VLAYAEDPCGAEQGYSGREIMAEFRRATGLPTATNMIATDWRQMGHTISLQSV 325
Query: 329 SVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377
+ + + G++++ + + GL ++ H+AA
Sbjct: 326 DIPLADPHFWTMQGSIRVAQMCHEWGLTWGSHSNNHFDISLAMFTHVAA 374
|
| >2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A* Length = 398 | Back alignment and structure |
|---|
Score = 95.0 bits (237), Expect = 1e-21
Identities = 50/292 (17%), Positives = 101/292 (34%), Gaps = 25/292 (8%)
Query: 71 EGRELNVALSAPLSLG------LSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTK 124
+ + L+ P+S + V + + +G G G + G
Sbjct: 32 KLSLAFLPLATPVSDAKVLTGRQKPLTEVAIIIAEIRSRDGFEGVGF-SYSKRAGGQGIY 90
Query: 125 ALVKVREACQFLRQSPPTTLNFALDEIARIL----PGSEFASVRAGVEMALIDAVANSID 180
A K E L P ++ ++ + +++AL D A
Sbjct: 91 AHAK--EIADNLLGEDPNDIDKIYTKLLWAGASVGRSGMAVQAISPIDIALWDMKAKRAG 148
Query: 181 IPLWRLFGGASNSL---STAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFD 236
+PL +L G +S+ +T+ + + + G +KL VG+ N D
Sbjct: 149 LPLAKLLGAHRDSVQCYNTSGGFLHTPLDQVLKNVVISRENGIGGIKLKVGQPNCAEDIR 208
Query: 237 VLQAI-HAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDV 295
L A+ A+ ++DAN+ + E A+ + K+ + E+P+ D G +
Sbjct: 209 RLTAVREALGDEFPLMVDANQQWDRETAIRMGRKMEQFN--LIWIEEPLDAYDIEGHAQL 266
Query: 296 SNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQI 346
+ E S + ++++ N + V + G+ L+I
Sbjct: 267 ----AAALDTPIATGEMLTSFREHEQLILGNASDFVQPDAPRVGGISPFLKI 314
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A Length = 388 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 3e-21
Identities = 50/294 (17%), Positives = 106/294 (36%), Gaps = 30/294 (10%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARI--- 154
+R+ G VGWGE +V AL+ A + + + + +
Sbjct: 55 VRMTTEAGTVGWGET--YGIVAPGAVAALINDLLAGFVIGRDA--------SDPSAVYDD 104
Query: 155 ---------LPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLST-AITIPAVS 204
G + A +++AL D + L GG +S +P +
Sbjct: 105 LYDMMRVRGYTGGFYVDALAALDIALWDIAGQEAGKSIRDLLGGGVDSFPAYVSGLPERT 164
Query: 205 PAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAI-HAVHPHCSFILDANEGYTSEEA 263
ELA + GF+ K + + + P D + T E A
Sbjct: 165 LKARGELAKYWQDRGFNAFKFATPVADDGPAAEIANLRQVLGPQAKIAADMHWNQTPERA 224
Query: 264 VEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVM 323
+E++ ++ P E PV +D +GL V +++T + + E R+ D++ +
Sbjct: 225 LELIAEMQPFD--PWFAEAPVWTEDIAGLEKV---SKNT-DVPIAVGEEWRTHWDMRARI 278
Query: 324 QENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377
+ ++V ++ G+ ++I + G+ ++ + + +L ++
Sbjct: 279 ERCRIAIVQPEMGHKGITNFIRIGALAAEHGIDVIPHATVGAGIFLAASLQASS 332
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A Length = 371 | Back alignment and structure |
|---|
Score = 91.5 bits (228), Expect = 2e-20
Identities = 54/287 (18%), Positives = 105/287 (36%), Gaps = 20/287 (6%)
Query: 71 EGRELNVALSAPLSLG-LSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKV 129
+ L L+ ++ + E + +R+E S+G G G G +V
Sbjct: 8 RTDLYRIPLPTRLTDSTHGAMMDFELITVRIEDSDGATGLGY-TYTVNHGGAAVATMV-D 65
Query: 130 REACQFLRQSPPTTLNFALDEIARIL----PGSEFASVRAGVEMALIDAVANSIDIPLWR 185
++ L + + + L G S + V++AL D PLW+
Sbjct: 66 KDLRGCLLGADAEQIEKIWQSMWWRLHYAGRGGHATSAISAVDIALWDLKGIRARTPLWK 125
Query: 186 LFGGASNSL---STAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAI 241
LFGG + + I + A+ A ++ GF +K+ VGR ++ D D + A+
Sbjct: 126 LFGGYDPVVPVYAGGI-DLELPVADLKTQADRFLAGGFRAIKMKVGRPDLKEDVDRVSAL 184
Query: 242 -HAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFAR 300
+ ++DAN +T + A+ L E+P DD G +
Sbjct: 185 REHLGDSFPLMVDANMKWTVDGAIRAARALAPFD--LHWIEEPTIPDDLVGNARI----V 238
Query: 301 DTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQI 346
G ++ E+ +L D ++ ++ ++ G ++
Sbjct: 239 RESGHTIAGGENLHTLYDFHNAVRAGSLTLPEPDVSNIGGYTTFRKV 285
|
| >3cyj_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, isomerase, PSI-2; 2.30A {Rubrobacter xylanophilus dsm 9941} Length = 372 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 2e-20
Identities = 49/285 (17%), Positives = 94/285 (32%), Gaps = 22/285 (7%)
Query: 71 EGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVR 130
E V P S G ++ + + G G G V
Sbjct: 12 EVSAYTVPTDYPESDGTLQWDSTTMILVEAH-GGGRKGLGYT-----YGDVSVGRFV-ES 64
Query: 131 EACQFLRQSPPTTLNFALDEIARIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRL 186
+ S + + + A + V++AL D A + +PL
Sbjct: 65 KLAGVAEGSDALSPPAVWARMQAAIRNAGRPGVGAMAVSAVDIALWDLKARLLGLPLADA 124
Query: 187 FGGASNSLST--AITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAI-HA 243
+ + + E + G +K+ VGR D + ++A A
Sbjct: 125 LPRFHAEVPVYGSGGFTSYPLRRLQEQLGGWAAAGIPRVKMKVGREPEKDPERVRAAREA 184
Query: 244 VHPHCSFILDANEGYTSEEAVEVLGKLN-DMGVIPVLFEQPVHRDDWSGLHDVSNFARDT 302
+ ++DAN YT ++A+ G + G E+PV +D GL + R
Sbjct: 185 IGESVELMVDANGAYTRKQALYWAGAFAREAG--ISYLEEPVSSEDREGLRLLR--DRGP 240
Query: 303 YGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQI 346
G+++ A E +L + + ++ + + G+ G L++
Sbjct: 241 GGVAIAAGEYEWTLPQLHDLAG--CVDILQADVTRCGGITGLLRV 283
|
| >2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides} Length = 401 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 2e-20
Identities = 61/305 (20%), Positives = 111/305 (36%), Gaps = 36/305 (11%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLR-----QSPPTTLNFALDEIA 152
+RV + G +GWGE PL + C+ + Q D+IA
Sbjct: 31 VRVA-AGGHIGWGECEAAPLPSIAAFVCPK-SHGVCRPVSDSVLGQRL-----DGPDDIA 83
Query: 153 RIL--------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAIT--IPA 202
RI + + +G+EMAL D + + P W L G +++ +
Sbjct: 84 RIAALVGYNSMDLLQAPHMLSGIEMALWDLLGRRLSAPAWALLGYSASHGKRPYASLLFG 143
Query: 203 VSPAEASELASKYCKLGFSTLKLNVGR----NITADFDVLQAI-HAVHPHCSFILDANEG 257
+P E E A + GF+ +K G + AD D + A + P ++D +
Sbjct: 144 DTPQETLERARAARRDGFAAVKFGWGPIGRGTVAADADQIMAAREGLGPDGDLMVDVGQI 203
Query: 258 Y--TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRS 315
+ E A L L+ G + E+P + ++ R + + E+ +
Sbjct: 204 FGEDVEAAAARLPTLDAAG--VLWLEEPFDAGALAAHAALA--GRGA-RVRIAGGEAAHN 258
Query: 316 LNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALH 374
+ Q +M + I + G+ ++ A + G+ + + LA +L
Sbjct: 259 FHMAQHLMDYGRIGFIQIDCGRIGGLGPAKRVADAAQARGITYVN-HTFTSHLALSASLQ 317
Query: 375 LAAGL 379
AGL
Sbjct: 318 PFAGL 322
|
| >3mzn_A Glucarate dehydratase; lyase, structural genomics, protein structure initiative, PS nysgrc; 1.85A {Chromohalobacter salexigens} PDB: 3nfu_A Length = 450 | Back alignment and structure |
|---|
Score = 91.1 bits (226), Expect = 4e-20
Identities = 51/330 (15%), Positives = 103/330 (31%), Gaps = 59/330 (17%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARIL-- 155
+ +E +G G GE+ + + + + + + + L +L
Sbjct: 38 LVLEDESGNRGVGEI-----PSSEGILNGL--EKCRSLVEGARVNEVKQVLSRARGLLAQ 90
Query: 156 -----------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-------------- 190
V +E AL D ++ +P+ L G
Sbjct: 91 GGPEERGRQTFDLRVAVHVITAIESALFDLFGQALGMPVADLLGQYGRQRDEVEALGYLF 150
Query: 191 ------------------SNSLSTAITIPAVSPAEASELASKYC-KLGFSTLKLNVGR-N 230
++ A++P + LA + GF KL G
Sbjct: 151 LLGDPDKTDLPYPRVADPVDAWDEVRYREAMTPEAVANLARAAYDRYGFKDFKLKGGVLR 210
Query: 231 ITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDD-W 289
+ D ++A+H P LD N + +EAV VL + + E P ++ +
Sbjct: 211 GEEEADCIRALHEAFPEARLALDPNGAWKLDEAVRVLEPIKH---LLSYAEDPCGQEGGF 267
Query: 290 SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKA 349
SG ++ F + T G+ + +Q +Q N + + + G + + +
Sbjct: 268 SGRETMAEFKKRT-GLPTATNMIATDYKQLQYAVQLNSVDIPLADCHFWTMQGAVAVGEL 326
Query: 350 TRKSGLHLMIDGMIETRLATGFALHLAAGL 379
+ G+ ++ H+AA
Sbjct: 327 CNEWGMTWGSHSNNHFDISLAMMTHVAAAC 356
|
| >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A* Length = 393 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 6e-20
Identities = 46/292 (15%), Positives = 94/292 (32%), Gaps = 25/292 (8%)
Query: 71 EGRELNVALSAPLSLG------LSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTK 124
+ L+ P+S + + + +E + G G G + G
Sbjct: 19 RISSCYLPLATPISDAKVLTGRQKPMTEIAILFAEIETAGGHQGLGF-SYSKRAGGPGQF 77
Query: 125 ALVKVREACQFLRQSPPTTLNFALDEIARIL----PGSEFASVRAGVEMALIDAVANSID 180
A + E L P+ + D++ ++AL D A
Sbjct: 78 AHAR--EIAPALIGEDPSDIAKLWDKLCWAGASAGRSGLSTQAIGAFDVALWDLKAKRAG 135
Query: 181 IPLWRLFGGASNSL---STAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFD 236
+ L +L G +S+ +T+ + AS + G +KL VG+ + D
Sbjct: 136 LSLAKLLGSYRDSVRCYNTSGGFLHTPIDQLMVNASASIERGIGGIKLKVGQPDGALDIA 195
Query: 237 VLQAI-HAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDV 295
+ A+ + ++DAN+ + A + V E+P+ D G +
Sbjct: 196 RVTAVRKHLGDAVPLMVDANQQWDRPTAQRMCRIFEPFN--LVWIEEPLDAYDHEGHAAL 253
Query: 296 SNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQI 346
+ + E S + +++ A + + G+ L+I
Sbjct: 254 ----ALQFDTPIATGEMLTSAAEHGDLIRHRAADYLMPDAPRVGGITPFLKI 301
|
| >3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} Length = 372 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 3e-19
Identities = 47/286 (16%), Positives = 90/286 (31%), Gaps = 30/286 (10%)
Query: 80 SAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLR-Q 138
S +S S+ + V ++ S+G G+G + D+ L +
Sbjct: 17 SESISDSTHSITHWGVVGAKITTSDGIEGYGFTGTHAHLPSDRLITSCISDCYAPLLLGE 76
Query: 139 SPPTTLNFALDEIARILPGSEF--------ASVRA--GVEMALIDAVANSIDIPLWRLFG 188
+ L + A V++AL D A +PLW G
Sbjct: 77 DA-----SDHSRLWTKLARYPSLQWVGRAGITHLALAAVDVALWDIKAKKAGVPLWHYLG 131
Query: 189 GASNS-----LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAI- 241
GA + + + + A + GF+ LK+ VG + D L A+
Sbjct: 132 GARTAGVEAYNTDIGWLSFTLEDLLAGSARAVEEDGFTRLKIKVGHDDPNIDIARLTAVR 191
Query: 242 HAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARD 301
V +D N + D+ FE+P+ DD + +
Sbjct: 192 ERVDSAVRIAIDGNGKWDLPTCQRFCAAAKDLD--IYWFEEPLWYDDVTSHARL----AR 245
Query: 302 TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQI 346
I + E +++ + + + V + + G+ +Q+
Sbjct: 246 NTSIPIALGEQLYTVDAFRSFIDAGAVAYVQPDVTRLGGITEYIQV 291
|
| >3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A* Length = 389 | Back alignment and structure |
|---|
Score = 85.4 bits (212), Expect = 2e-18
Identities = 61/307 (19%), Positives = 117/307 (38%), Gaps = 51/307 (16%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARI--- 154
+ V G G G + K ++ Q + + P I +
Sbjct: 38 VEVRTDEGVTGVGSPSG--PYDLAVLKRAIEDVIGPQLIGEDP--------ANINYLWHK 87
Query: 155 --------LPGSEFASVRA--GVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPA-- 202
G + A GV++AL D +++ P+++L GG ++ + A
Sbjct: 88 VFHGEVSRNLGHRSVGIAAMSGVDIALWDLKGRAMNQPIYQLLGGKFHTRG----VRAYA 143
Query: 203 ------VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAI-HAVHPHCSFILDAN 255
++P +A++ + + + GF+ KL VGR D L+A+ V ++DAN
Sbjct: 144 SSIYWDLTPDQAADELAGWVEQGFTAAKLKVGRAPRKDAANLRAMRQRVGADVEILVDAN 203
Query: 256 EGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRS 315
+ +A+ +L L++ G FE+P+ DD G + A+ T + + E+ +
Sbjct: 204 QSLGRHDALAMLRILDEAG--CYWFEEPLSIDDIEGHRILR--AQGT-PVRIATGENLYT 258
Query: 316 LNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGL----HLMIDGMIETRLATG 370
N ++ + V+ ++ G+ L I + + L H D +
Sbjct: 259 RNAFNDYIRNDAIDVLQADASRAGGITEALAISASAASAHLAWNPHTFNDI-----ITVA 313
Query: 371 FALHLAA 377
LHL A
Sbjct: 314 ANLHLVA 320
|
| >2ppg_A Putative isomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.49A {Sinorhizobium meliloti} Length = 399 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 9e-18
Identities = 58/295 (19%), Positives = 112/295 (37%), Gaps = 31/295 (10%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARI--- 154
+R+E NG VGWGE LV T ++ A + + P + A I
Sbjct: 57 VRIETENGAVGWGET--YGLVAPRATMEIIDDLLADFTIGRDP--------FDAAAIHDD 106
Query: 155 ---------LPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASN-SLST-AITIPAV 203
G + A +++AL D +P+ +L GG ++ +P
Sbjct: 107 LYDLMRVRGYTGGFYVDALAAIDIALWDLAGKLAGLPVCKLLGGQRRDRIAAYISGLPED 166
Query: 204 SPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAI-HAVHPHCSFILDANEGYTSEE 262
+ A+ +ELA+ + GFS+ K ++ + + P D + +T+ E
Sbjct: 167 TRAKRAELAAAWQAKGFSSFKFASPVADDGVAKEMEILRERLGPAVRIACDMHWAHTASE 226
Query: 263 AVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKV 322
AV ++ + G E PV +D GL V A ++ E R+++D+
Sbjct: 227 AVALIKAMEPHG--LWFAEAPVRTEDIDGLARV---AASV-STAIAVGEEWRTVHDMVPR 280
Query: 323 MQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377
+ ++V ++ G+ ++I + ++ I + +L +A
Sbjct: 281 VARRALAIVQPEMGHKGITQFMRIGAYAHVHHIKVIPHATIGAGIFLAASLQASA 335
|
| >3pfr_A Mandelate racemase/muconate lactonizing protein; emolase superfamily fold, D-glucarate dehydratase, D-glucara isomerase; HET: GKR; 1.90A {Actinobacillus succinogenes} PDB: 3n6j_A 3n6h_A* Length = 455 | Back alignment and structure |
|---|
Score = 82.5 bits (204), Expect = 3e-17
Identities = 48/327 (14%), Positives = 104/327 (31%), Gaps = 58/327 (17%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARILPG 157
+ + ++G G GE + + EA + P + LN ++++
Sbjct: 42 VILTDNSGHTGVGEAPGGATIEN-------ALTEAIPHVVGRPISILNKIVNDMHNGYLD 94
Query: 158 SEFA-------------SVRAGVEMALIDAVANSIDIPLWRLFGG--------------- 189
+++ + A +E AL+D + + +P+ L G
Sbjct: 95 ADYDTFGKGAWTFELRVNAVAALEAALLDLMGQFLGVPVAELLGPGKQRDEVTVLGYLFY 154
Query: 190 ----------------ASNSLSTAITIPAVSPAEASELASKYCK-LGFSTLKLNVGR-NI 231
+ A+ ELA+ GF KL G
Sbjct: 155 VGDDKITDLPYQQPVTGKHEWYDIRRKKAMDTQAVIELAAASKDRYGFKDFKLKGGVFEG 214
Query: 232 TADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSG 291
+ + D + + P LD N ++ +EA+++ LND + E P ++
Sbjct: 215 SKEIDTVIELKKHFPDARITLDPNGCWSLDEAIQLCKGLND---VLTYAEDPCIGENGYS 271
Query: 292 LHDV-SNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKAT 350
++ + F R T GI + + ++ + + + + G ++ +
Sbjct: 272 GREIMAEFRRRT-GIPTATNMIATNWREMCHAIMLQSVDIPLADPHFWTLTGASRVAQLC 330
Query: 351 RKSGLHLMIDGMIETRLATGFALHLAA 377
+ GL ++ H+ A
Sbjct: 331 NEWGLTWGCHSNNHFDISLAMFSHVGA 357
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} Length = 391 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 2e-16
Identities = 46/298 (15%), Positives = 107/298 (35%), Gaps = 35/298 (11%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLR-QSPPTTLNFALDEIARIL- 155
I++ +G GWGE A ++K E + + I
Sbjct: 39 IKITTEDGIEGWGE-AFSINFREKGIAIIIK--ELFREISNIPN--------LSIKSFYN 87
Query: 156 ---------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSL----STAITIPA 202
G +F+S + +E+AL D ++PL L + +T +
Sbjct: 88 KISLLSDGHRGLDFSSATSAIEIALWDISGKLKNLPLNSLLTKSPKPNVPIYATCWSDLK 147
Query: 203 VSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAI-HAVHPHCSFILDANEGYTS 260
+ K+ + +K+ +++ ++ + V +LD
Sbjct: 148 KDTNDYLRQIEKFYGKKYGGIKIYPMLDSLSISIQFVEKVREIVGDELPLMLDLAVPEDL 207
Query: 261 EEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQ 320
++ L +++ P E+PV ++ S L ++ ++T+ + VV E L +
Sbjct: 208 DQTKSFLKEVSSFN--PYWIEEPVDGENISLLTEI----KNTFNMKVVTGEKQSGLVHFR 261
Query: 321 KVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377
+++ N A + N ++ G++ ++I +G+ + ++ LH+ +
Sbjct: 262 ELISRNAADIFNPDISGMGGLIDIIEISNEASNNGIFISPHCWNSMSVSASAMLHVCS 319
|
| >3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A* Length = 392 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 3e-16
Identities = 52/349 (14%), Positives = 101/349 (28%), Gaps = 67/349 (19%)
Query: 61 ETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTG 120
E + +RA A + + V I +G G+G +
Sbjct: 18 EFAKLTGERARS--------AGANGRIGVHGKSCTVDIARITIDGQTGYGSSIHM----- 64
Query: 121 DQTKALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSID 180
E + + ++ G + R +E ++D +
Sbjct: 65 --------TPEWAEDVIGRRLL-------DLFDD-RGRLREAYRLQLEYPVLDWLGQRQG 108
Query: 181 IPLWRLFGGASNSLSTAITIPA----------------VSPAEASELASKYCKLGFSTLK 224
P++ L GA ++ +P + A E A + G K
Sbjct: 109 KPVYDLVSGAHLETGASLVVPCYDTSLYFDDLHLADERAAVALMQEEAMQGYAKGQRHFK 168
Query: 225 LNVGR---------NITADFDVLQAIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMG 274
+ VGR D +++ I P ++DAN Y EVL L+D+
Sbjct: 169 IKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSDVN 228
Query: 275 VIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334
E+ H D+ + + + E S + ++ V+
Sbjct: 229 --LYWLEEAFHEDEALYEDLKEWLGQRGQNVLIADGEGLASPHLIE-WATRGRVDVLQYD 285
Query: 335 LAKFGVLGTLQIIKATRKSGL----HLMIDGMIETRLATGFALHLAAGL 379
+ G +++ + GL H + + HL+A +
Sbjct: 286 IIWPGFTHWMELGEKLDAHGLRSAPHCYGNA-----YGIYASGHLSAAV 329
|
| >3tcs_A Racemase, putative; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, TIM barrel; HET: PG4; 1.88A {Roseobacter denitrificans} PDB: 3u4f_A 3t9p_A 3t8q_A Length = 388 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 8e-16
Identities = 65/312 (20%), Positives = 109/312 (34%), Gaps = 59/312 (18%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLR-QSPPTTLNFALDEIARIL- 155
+RV +G GWG+V+ D T ++ R+ ++ Q LD++ I+
Sbjct: 39 VRVTTQDGAQGWGQVSTYH---ADITCTVL-HRQVAPWMLGQDI-----TDLDDLLDIVT 89
Query: 156 ------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSL---STAITIPAVSPA 206
PGS AGV+ A+ D P+ + GG + ++++
Sbjct: 90 EREHKFPGSYLRRAMAGVDTAIWDLRGKQQGKPVAEVLGGTPGLIRAYASSMKRDITPRD 149
Query: 207 EASELASKYCKLGFSTLKLNVGRNITADFD--------VLQAI-HAVHPHCSFILDANEG 257
EA L GF+ K+ G + + D ++ + + ++DAN
Sbjct: 150 EAERLKRLRDTQGFTAFKVRAGAEVGRNRDEWPGRTEEIIPTMRRELGDDVDLLIDANSC 209
Query: 258 YTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLN 317
YT + A+EV L D G FE+P + + V D I V E L
Sbjct: 210 YTPDRAIEVGHMLQDHG--FCHFEEPCPYWELAQTKQV----TDALDIDVTGGEQDCDLP 263
Query: 318 DVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIETR----------- 366
Q+++ +V + G G I T + + M
Sbjct: 264 TWQRMIDMRAVDIVQPDILYLG--G----ICRTLR------VVEMARAAGLPVTPHCANW 311
Query: 367 -LATGFALHLAA 377
L T F +HL
Sbjct: 312 SLVTLFTMHLLR 323
|
| >2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A Length = 441 | Back alignment and structure |
|---|
Score = 77.7 bits (191), Expect = 1e-15
Identities = 63/344 (18%), Positives = 108/344 (31%), Gaps = 76/344 (22%)
Query: 96 VAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARIL 155
V +R + + G+G V + QT A V + + + L AR L
Sbjct: 37 VVLRTDGAEDLAGYGLVFTIGRGNDVQTAA---VAALAEHVVGLSVDKVIADLGAFARRL 93
Query: 156 PGSEFASVR-----------AGVEMALIDAVANSIDIPLWRLFGGASN------------ 192
V A D A + + PLWR +
Sbjct: 94 TNDSQLRWLGPEKGVMHMAIGAVINAAWDLAARAANKPLWRFIAELTPEQLVDTIDFRYL 153
Query: 193 ---------------------------------SLSTAITIPAVSPAEASELASKYCKLG 219
+ +T+ S + LA + G
Sbjct: 154 SDALTRDEALAILRDAQPQRAARTATLIEQGYPAYTTSPGWLGYSDEKLVRLAKEAVADG 213
Query: 220 FSTLKLNVGRNITADFDVLQAIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPV 278
F T+KL VG N+ D + A+ P + +DAN+ + A++ + +L +
Sbjct: 214 FRTIKLKVGANVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWMRQLAEFD--IA 271
Query: 279 LFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF 338
E+P DD G + + + V E ++ ++++Q ++ I A+
Sbjct: 272 WIEEPTSPDDVLGHAAI---RQGITPVPVSTGEHTQNRVVFKQLLQAGAVDLIQIDAARV 328
Query: 339 -GVLGTLQIIKATRKSGL----HLMIDGMIETRLATGFALHLAA 377
GV L I+ K G+ H G+ E HLA
Sbjct: 329 GGVNENLAILLLAAKFGVRVFPHAGGVGLCEL------VQHLAM 366
|
| >4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A* Length = 393 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 6e-15
Identities = 47/222 (21%), Positives = 82/222 (36%), Gaps = 32/222 (14%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLR-QSPPTTLNFALDEIARIL- 155
+R+ +G VGWGE + P++ G + +V R+ FL Q + +
Sbjct: 28 VRITAEDGTVGWGEAS--PMLGGIASLGVV-ARDIAPFLEGQEV-----LDHAVLLDRMM 79
Query: 156 -------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNS-----LSTAITIPAV 203
P + A ++AL D + P+++L GGA + S
Sbjct: 80 HRLVKLGPEGIATAALAACDIALWDLKGKLLGQPIYKLLGGAWRTRLPCYSSIGGNAARS 139
Query: 204 SPAEASELASKYCKLGFSTLKLNVGR-------NITADFDVLQAI-HAVHPHCSFILDAN 255
E+A + + +K+ +I D +A+ + P DAN
Sbjct: 140 VDEVVREVARRVEAEQPAAVKIRWDGDRTRCDVDIPGDIAKARAVRELLGPDAVIGFDAN 199
Query: 256 EGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSN 297
GY+ A+ V L D+G FE+PV + +V+
Sbjct: 200 NGYSVGGAIRVGRALEDLG--YSWFEEPVQHYHVGAMGEVAQ 239
|
| >3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana} Length = 374 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 3e-14
Identities = 49/256 (19%), Positives = 88/256 (34%), Gaps = 36/256 (14%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLR----QSPPTTLNFALDEIAR 153
++V G VG GE PLV +A R ++ EI R
Sbjct: 31 VKVHTDKGIVGVGEADSSPLVVQACIEAPQTNFYCNGLKRLLIGENA--------LEIER 82
Query: 154 I---------LPGSEFASVRA--GVEMALIDAVANSIDIPLWRLFGGASN-SLST-AITI 200
+ G A + A +++AL D +P+ L GG + I
Sbjct: 83 LWNKMYWGSNYMGRRGAGIHAISAIDIALWDIAGQFYGVPVHTLLGGKYRDKIRCYGTFI 142
Query: 201 PAVSPAEASELASKYCKLGFSTLKLNVGR---NITADFDVLQAIH-AVHPHCSFILDANE 256
PA P + + GFS++K G + D+ +++A+ A P +D
Sbjct: 143 PADKPEDNVAIVQGLKDQGFSSIKFGGGVMGDDPDTDYAIVKAVREAAGPEMEVQIDLAS 202
Query: 257 G-YTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRS 315
+T + + +L + E+PV D + + ES +
Sbjct: 203 KWHTCGHSAMMAKRLEEFN--LNWIEEPVLADSLISYEKL----SRQVSQKIAGGESLTT 256
Query: 316 LNDVQKVMQENLASVV 331
+ Q+ + ++ A +V
Sbjct: 257 RYEFQEFITKSNADIV 272
|
| >3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A Length = 405 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 7e-14
Identities = 51/275 (18%), Positives = 89/275 (32%), Gaps = 62/275 (22%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARIL-- 155
++VE G GWGE + + T+ A+ E++ L
Sbjct: 19 LKVETDEGVTGWGEPVI-----------------------EGRARTVEAAVHELSDYLIG 55
Query: 156 --------------------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASN-SL 194
G S AG++ AL D + +P++ L GG +
Sbjct: 56 QDPSRINDLWQTMYRAGFYRGGPILMSAIAGIDQALWDIKGKVLGVPVYELLGGLVRDKM 115
Query: 195 STAITIPAVSPAEASELASKYCKLGFSTLKLNVG---------RNITADFDVLQAIH-AV 244
T + PA+ GF KLN R + A + I A
Sbjct: 116 RTYSWVGGDRPADVIAGMKALQAGGFDHFKLNGCEEMGIIDTSRAVDAAVARVAEIRSAF 175
Query: 245 HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG 304
F LD + ++ A ++ +L P+ E+PV + +
Sbjct: 176 GNTVEFGLDFHGRVSAPMAKVLIKELEPYR--PLFIEEPVLAEQAETYARL----AAHTH 229
Query: 305 ISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG 339
+ + A E S D ++V++ S++ L+ G
Sbjct: 230 LPIAAGERMFSRFDFKRVLEAGGVSILQPDLSHAG 264
|
| >3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A Length = 433 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 1e-13
Identities = 49/275 (17%), Positives = 100/275 (36%), Gaps = 45/275 (16%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARIL-- 155
+++ +G GWGE V + +A+++ A ++P ++ + R +
Sbjct: 27 VKLTTDDGITGWGE-CYAASVGPEAMRAVIEDVFARHMEGENP-----ENIELMFRRVYS 80
Query: 156 ------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASN-----------SLSTAI 198
P +G+E+A D + + P+W L GG N I
Sbjct: 81 SGFTQRPDLTAIGAFSGLEIACWDILGKARGRPVWALLGGKMNPRIRAYTYLYPLPHHPI 140
Query: 199 TIPAVSPAEASELASKYCKLGFSTLKLNVG-------------RNITADFDVLQAIH-AV 244
T S A+E A+ G++ +K + +I+ + + I AV
Sbjct: 141 TPFWTSADMAAESAADCVARGYTAVKFDPAGPYTLRGGHMPAMTDISLSVEFCRKIRAAV 200
Query: 245 HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG 304
+ + +T+ A+ + + P+ +E+PV D+ + V
Sbjct: 201 GDKADLLFGTHGQFTTAGAIRLGQAIEPYS--PLWYEEPVPPDNVGAMAQV----ARAVR 254
Query: 305 ISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG 339
I V E + + V++E A+++ L + G
Sbjct: 255 IPVATGERLTTKAEFAPVLREGAAAILQPALGRAG 289
|
| >1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1 Length = 382 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 1e-13
Identities = 41/232 (17%), Positives = 74/232 (31%), Gaps = 49/232 (21%)
Query: 96 VAIRVELSNGCVGWGEVAVVPLVTGDQTKALVK--------------VREACQFLRQSPP 141
+ V +G G +V + VK ++ + R S
Sbjct: 36 AMLTVRTEDGQEGHSF-TAPEIVRPHVIEKFVKKVLIGEDHRDRERLWQDLAHWQRGSAA 94
Query: 142 TTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG--------ASNS 193
+ L A V+ AL D S+ P+++L GG S
Sbjct: 95 QLTDRTL----------------AVVDCALWDLAGRSLGQPVYKLIGGYRDKVLAYGSIM 138
Query: 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-------NITADFDVLQAI-HAVH 245
+ +P + A K G+ +KL+ ++ D A+ AV
Sbjct: 139 CGDELEGGLATPEDYGRFAETLVKRGYKGIKLHTWMPPVSWAPDVKMDLKACAAVREAVG 198
Query: 246 PHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSN 297
P ++DA Y+ +A+ + L +G E+P+ S +S+
Sbjct: 199 PDIRLMIDAFHWYSRTDALALGRGLEKLG--FDWIEEPMDEQSLSSYKWLSD 248
|
| >4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified} Length = 412 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 1e-13
Identities = 47/274 (17%), Positives = 93/274 (33%), Gaps = 44/274 (16%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARIL-- 155
++++ +G G GE+ + V E L + P ++ + R
Sbjct: 26 VKLKTDDGIEGVGEIYSATFGPKAMAPIIDDVFERH-LLNRDP-----HHVERLFRQAYS 79
Query: 156 ------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASN----------SLSTAIT 199
P V +G+EMA D + + P++ L GG + +
Sbjct: 80 SGFTQRPDLTMMGVVSGLEMACWDIIGKAAAKPVYELLGGRIHERLRSYTYLYPKNAKGE 139
Query: 200 IPAVSPAEASELASKYCKLGFSTLKLNVG-------------RNITADFDVLQAIH-AVH 245
P A+E A++ KLGF+ +K + + + + AV
Sbjct: 140 YDYDDPDLAAECAAENVKLGFTAVKFDPAGPYTAYSGHQLSLEVLDRCELFCRRVREAVG 199
Query: 246 PHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGI 305
+ + A+ + +L P+ FE+PV + V I
Sbjct: 200 SKADLLFGTHGQMVPSSAIRLAKRLEKYD--PLWFEEPVPPGQEEAIAQV----AKHTSI 253
Query: 306 SVVADESCRSLNDVQKVMQENLASVVNIKLAKFG 339
+ E + + K++Q AS++ + +A+ G
Sbjct: 254 PIATGERLTTKYEFHKLLQAGGASILQLNVARVG 287
|
| >3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A Length = 412 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 7e-13
Identities = 43/255 (16%), Positives = 89/255 (34%), Gaps = 35/255 (13%)
Query: 96 VAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLR-QSPPTTLNFALDEIARI 154
+ VE +G +G G A+ P V V + + P F I
Sbjct: 70 LTCEVETEDGTIGIGNAALAPSVV-----KKVIDDWYAPLVIGEDP-----FDYAYIWEK 119
Query: 155 L--------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASN-SLST-AITIPAVS 204
+ + + +++A+ D + + P+++L GG + + + A S
Sbjct: 120 MYRRSHAWGRKGIGMTAISAIDIAIWDLMGKLVGKPVFKLLGGRTKDRIPVYYSKLYAGS 179
Query: 205 PAEASELASKYCKLGFSTLKLNVG-------RNITADFDVLQAI-HAVHPHCSFILDANE 256
+ A + K G+ K G + + ++A+ + +L+
Sbjct: 180 IEAMQKEAEEAMKGGYKAFKSRFGYGPKDGMPGMRENLKRVEAVREVIGYDNDLMLECYM 239
Query: 257 GYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSL 316
G+ + A +L KL P E+PV DD +G ++ + + E S+
Sbjct: 240 GWNLDYAKRMLPKLAPYE--PRWLEEPVIADDVAGYAEL---NAMN-IVPISGGEHEFSV 293
Query: 317 NDVQKVMQENLASVV 331
+++ SV+
Sbjct: 294 IGCAELINRKAVSVL 308
|
| >2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti} Length = 392 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 3e-12
Identities = 41/266 (15%), Positives = 89/266 (33%), Gaps = 43/266 (16%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARIL-- 155
+ + G G GE + V G ++K + + P ++E+ +
Sbjct: 23 VEISTDEGITGAGEAGIAYGVGGTAAAGMIKDLSERFLIGKDP-----SRIEELWSTMYD 77
Query: 156 -------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSL----STAITIPAVS 204
G+ + + +E AL D + +P++ LFGG + A +
Sbjct: 78 HSFWAKNGGAIIFAGISAIEQALWDIKGKCLGVPVYELFGGKIRDRVRAYANGWYGAADT 137
Query: 205 PAEASELASKYCKLGFSTLKLNVG------------------RNITADFDVLQAI-HAVH 245
P E + + K G+ LK I + ++A+ A
Sbjct: 138 PDEFARAVERPLKEGYGALKFYPLAQRVGSALQHVTRRSMSAEAIELAYRRVKAVRDAAG 197
Query: 246 PHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGI 305
P ++D + G T++E + K+ ++ E+P D L + + +
Sbjct: 198 PEIELMVDLSGGLTTDETIRFCRKIGELD--ICFVEEPCDPFDNGALKVI----SEQIPL 251
Query: 306 SVVADESCRSLNDVQKVMQENLASVV 331
+ E + +K+ + ++
Sbjct: 252 PIAVGERVYTRFGFRKIFELQACGII 277
|
| >4a35_A Mitochondrial enolase superfamily member 1; isomerase; 1.74A {Homo sapiens} Length = 441 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 4e-12
Identities = 52/309 (16%), Positives = 90/309 (29%), Gaps = 64/309 (20%)
Query: 96 VAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARIL 155
V I + +G G G + V + + R L
Sbjct: 40 VVIETDAEDGIKGCGI-TFTLGKGTEVVVCAVNALA--HHVLNKDLKDIVGDFRGFYRQL 96
Query: 156 PGSEFASVR-----------AGVEMALIDAVANSIDIPLWRLFGGASN------------ 192
A V A+ D A P+W+L
Sbjct: 97 TSDGQLRWIGPEKGVVHLATAAVLNAVWDLWAKQEGKPVWKLLVDMDPRMLVSCIDFRYI 156
Query: 193 ---------------------------------SLSTAITIPAVSPAEASELASKYCKLG 219
+ +T+ S +L ++ K G
Sbjct: 157 TDVLTEEDALEILQKGQIGKKEREKQMLAQGYPAYTTSCAWLGYSDDTLKQLCAQALKDG 216
Query: 220 FSTLKLNVGRNITADFDVLQAIHAVH-PHCSFILDANEGYTSEEAVEVLGKLNDMGVIPV 278
++ K+ VG ++ D Q I + P + ++DAN+ + EAVE + KL P+
Sbjct: 217 WTRFKVKVGADLQDDMRRCQIIRDMIGPEKTLMMDANQRWDVPEAVEWMSKLAKFK--PL 274
Query: 279 LFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF 338
E+P DD G +S GI + E C + ++++Q + I +
Sbjct: 275 WIEEPTSPDDILGHATISKALVPL-GIGIATGEQCHNRVIFKQLLQAKALQFLQIDSCRL 333
Query: 339 -GVLGTLQI 346
V L +
Sbjct: 334 GSVNENLSV 342
|
| >2p3z_A L-rhamnonate dehydratase; enolase, structural genomics, PSI, protein structure initiat YORK structural genomics research consortium; 1.80A {Salmonella typhimurium LT2} PDB: 3box_A 3cxo_A* 2gsh_A 3d47_A 3d46_A 2i5q_A Length = 415 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 5e-12
Identities = 36/258 (13%), Positives = 78/258 (30%), Gaps = 41/258 (15%)
Query: 58 NLTETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPL 117
+ W+D A ++ S + + + + VE N G+
Sbjct: 36 DQGGNHWIDDHIA--TPMSKYRDYEQSRQSFGINVLGTLIVEVEAENRQTGFAVS----- 88
Query: 118 VTGDQTKALVKVREACQFLR-QSPPTTLNFALDEIARILPGSEFASVR---------AGV 167
G+ +V + +F+ + + I + G+ + V
Sbjct: 89 TAGEMGCFIV-EKHLNRFIEGKCV-----SDIKLIHDQMLGATMYYSGSGGLVMNTISCV 142
Query: 168 EMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNV 227
++AL D + +P+++L GGA I + +LA ++GF K+
Sbjct: 143 DLALWDLFGKVVGLPVYKLLGGAVRD-----EIQFYATGARPDLA---KEMGFIGGKMPT 194
Query: 228 G-------RNITADFDVLQAI-HAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVL 279
I D ++ + P +LD A ++
Sbjct: 195 HWGPHDGDAGIRKDAAMVADMREKCGPDFWLMLDCWMSQDVNYATKLAHACAPFN--LKW 252
Query: 280 FEQPVHRDDWSGLHDVSN 297
E+ + + G ++
Sbjct: 253 IEECLPPQQYEGYRELKR 270
|
| >3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana} Length = 394 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 5e-12
Identities = 40/265 (15%), Positives = 80/265 (30%), Gaps = 45/265 (16%)
Query: 98 IRVELSNGCVGWGEV---AVVPLVTGDQTKALVKVREACQFLR-QSPPTTLNFALDEIAR 153
++V NG G GE + + + + + P E
Sbjct: 29 VKVTDENGVYGLGEADGPPECMKAFSEIENEHKWLNNIKEAVIGRDP--------LEFRA 80
Query: 154 I---------LPGSEFASVRA--GVEMALIDAVANSIDIPLWRLFGGASNS--------- 193
G + A G++MAL D + +P ++L GGA +
Sbjct: 81 NYNRMYDTTKWIGMRGLGLFAISGIDMALYDLAGKQLGVPAYKLMGGAQKAQLTPYFTLY 140
Query: 194 -LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVG----RNITADFDVLQAI-HAVHPH 247
A + L +K + G +K+ + + L+ + +
Sbjct: 141 PSVAADATLSEIVEAYKPLIAKAKERGAKAVKVCIIPNDKVSDKEIVAYLRELREVIGWD 200
Query: 248 CSFILDANEGYTSEEAVEVLGK-LNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGIS 306
++D +T + + L D+ E + DD G + A
Sbjct: 201 MDMMVDCLYRWTDWQKARWTFRQLEDID--LYFIEACLQHDDLIGHQKL---AAAI-NTR 254
Query: 307 VVADESCRSLNDVQKVMQENLASVV 331
+ E + + Q+ +++ SVV
Sbjct: 255 LCGAEMSTTRFEAQEWLEKTGISVV 279
|
| >4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii} Length = 404 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 8e-12
Identities = 44/281 (15%), Positives = 90/281 (32%), Gaps = 52/281 (18%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLR-QSPPTTLNFALDEIARIL- 155
+++ + G G+GE+ K V + + P ++++
Sbjct: 27 VKLVTACGITGYGEIYNATFGPDLVAKMAEDV--FARQFAGEDP-----HHIEKLWHKTY 79
Query: 156 -------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASN---------------- 192
P V +G+EMA D + + P + L GG +
Sbjct: 80 GAGYTQRPDVTVMGVLSGLEMACWDIIGKAAGKPAYELLGGKVHERLRSYTYLYPTDGDV 139
Query: 193 SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVG-------------RNITADFDVLQ 239
A+E A+K GF+ +K + ++ +
Sbjct: 140 YPDPDKPNVYNDADMAAEAAAKAVDQGFTAVKFDPAGAYTIYDGHQPSLEDLERSEAFCK 199
Query: 240 AIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNF 298
I AV + + +T A + +L P+ FE+P+ + + +V
Sbjct: 200 QIRAAVGTKADLLFGTHGQFTVSGAKRLARRLEAYD--PLWFEEPIPPEKPEDMAEV--- 254
Query: 299 ARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG 339
I V E + + +V++ AS++ + L + G
Sbjct: 255 -ARYTSIPVATGERLCTKYEFSRVLETGAASILQMNLGRVG 294
|
| >3ekg_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, nysgrc, L-rhamnonate dehydratase,target PSI-2; HET: TLA; 1.60A {Azotobacter vinelandii avop} PDB: 2oz3_A* Length = 404 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 2e-11
Identities = 41/256 (16%), Positives = 84/256 (32%), Gaps = 46/256 (17%)
Query: 96 VAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLR-QSPPTTLNFALDEIARI 154
+ + +E S+G VG+ G+ +V + +FL +I RI
Sbjct: 61 LVVEIEASDGNVGFAVT-----TGGEPAAYIV-EKHLARFLEGARV--------TDIERI 106
Query: 155 -----------LPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAV 203
+ +GV++AL D + P+ +L GGA +
Sbjct: 107 WDQMYNSTLYYGRKGLVINTISGVDLALWDLLGKVRREPVHQLLGGAVRD-----ELQFY 161
Query: 204 SPAEASELASKYCKLGFSTLKLNVG-------RNITADFDVLQAI-HAVHPHCSFILDAN 255
+ +LA K+GF K+ + + + + L + V P + D
Sbjct: 162 ATGARPDLA---QKMGFIGGKMPLHHGPSEGEEGLKKNLEELATMRERVGPDFWLMFDCW 218
Query: 256 EGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRS 315
A + + G E+ + DD+ G ++ G+ V E +
Sbjct: 219 MSLDLNYATRLARGAREYG--LKWIEEALPPDDYWGYAELRR--NAPTGMMVTTGEHEAT 274
Query: 316 LNDVQKVMQENLASVV 331
+ +++ ++
Sbjct: 275 RWGFRMLLEMGCCDII 290
|
| >3fxg_A Rhamnonate dehydratase; structural gemomics, enolase superfamily, NYSGXRC, target 9265J, lyase, structural genomics, PSI-2; 1.90A {Gibberella zeae ph-1} PDB: 2p0i_A Length = 455 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 4e-11
Identities = 36/268 (13%), Positives = 78/268 (29%), Gaps = 71/268 (26%)
Query: 96 VAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARIL 155
+ +E ++G VG+ P R L
Sbjct: 67 FLVEIEATDGTVGFATGF-------------------------GGPPACWLVHQHFERFL 101
Query: 156 -----------------------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASN 192
+V + +++AL D + + P++RL GGA+
Sbjct: 102 IGADPRNTNLLFEQMYRASMFYGRKGLPIAVISVIDLALWDLLGKVRNEPVYRLIGGATK 161
Query: 193 SLSTAITIPA-VSPAEASELASKYCKLGFSTLKLNVG-------RNITADFDVLQAI-HA 243
+ + E + +GF K+ + + + + L+ A
Sbjct: 162 E-----RLDFYCTGPEPTA----AKAMGFWGGKVPLPFCPDDGHEGLRKNVEFLRKHREA 212
Query: 244 VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTY 303
V P ++D +E++ D+ +E+ + DD G + R
Sbjct: 213 VGPDFPIMVDCYMSLNVSYTIELVKACLDLN--INWWEECLSPDDTDGFALI---KRAHP 267
Query: 304 GISVVADESCRSLNDVQKVMQENLASVV 331
+ E S +K+++ ++
Sbjct: 268 TVKFTTGEHEYSRYGFRKLVEGRNLDII 295
|
| >2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis} Length = 403 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 9e-11
Identities = 38/241 (15%), Positives = 77/241 (31%), Gaps = 50/241 (20%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLR-QSPPTTLNFALDEIARIL- 155
++V G G GE + V G ++K + L + P F + I L
Sbjct: 26 VKVSTDEGIYGLGEAGIAYGVGGSAAAGILK--DYAALLIGEDP-----FNTEAIWEKLF 78
Query: 156 --------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASN-----------SLST 196
G+ S + ++A D ++++P+++L GG +
Sbjct: 79 KKTFWGQGGGTVIFSGISAFDIAFWDIKGKALNLPVYKLLGGKNREDLRVYASQLQFGWG 138
Query: 197 AITIPAVSPAEASELASKYCKLGFSTLKLNVG-------------------RNITADFDV 237
E +E A K G+ +K++V I +
Sbjct: 139 KERKSKGRKEEYAEEALKAVAEGYDAVKVDVLAHDRNGSREGVFLEGPLPSETIKIGVER 198
Query: 238 LQAIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVS 296
++AI AV P I++ + A++ + + +E+ + L +
Sbjct: 199 VEAIRNAVGPDVDIIVENHGHTDLVSAIQFAKAIEEFN--IFFYEEINTPLNPRLLKEAK 256
Query: 297 N 297
Sbjct: 257 K 257
|
| >2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A* Length = 410 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 1e-10
Identities = 41/288 (14%), Positives = 96/288 (33%), Gaps = 59/288 (20%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLR-QSPPTTLNFALDEIARIL- 155
IRV +G G GEV + +++ + + + P +++I
Sbjct: 30 IRVNTDSGLSGIGEVGLAYGAGAKAGVGIIR--DLAPLIVGEDP-----LNIEKIWEFFF 82
Query: 156 --------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASN-----------SLST 196
G+ F + + +++AL D + +P+++L GG +N
Sbjct: 83 RKTFWGMGGGNVFYAGMSAIDIALWDIKGKYLGVPVYQLLGGKTNEKLRTYASQLQFGWG 142
Query: 197 AITIPAVSPAEASELASKYCKLGFSTLKLNVG------------------------RNIT 232
V+P E +E A G+ +K++ +
Sbjct: 143 DKNHILVTPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLK 202
Query: 233 ADFDVLQAIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSG 291
+ A+ A+ I++ + + A++ + L+E+P+H +
Sbjct: 203 MGEARIAAMREAMGDDADIIVEIHSLLGTNSAIQFAKAIEKYR--IFLYEEPIHPLNSDN 260
Query: 292 LHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG 339
+ V + I + E + ++++++ +V L G
Sbjct: 261 MQKV----SRSTTIPIATGERSYTRWGYRELLEKQSIAVAQPDLCLCG 304
|
| >2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium} Length = 407 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 2e-10
Identities = 35/246 (14%), Positives = 83/246 (33%), Gaps = 58/246 (23%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKV-------REAC------QFLRQSPPTTL 144
+++ G G+GEV + V + K + + + +
Sbjct: 30 VKINTDEGISGFGEVGLAYGVGASAGIGMAKDLSAIIIGMDPMNNEAIWEKMLKKT---- 85
Query: 145 NFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASN------------ 192
G F++ +G+++AL D + +PL+++ GG S
Sbjct: 86 ------FWGQGGGGIFSAAMSGIDIALWDIKGKAWGVPLYKMLGGKSREKIRTYASQLQF 139
Query: 193 -SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVG-------------------RNIT 232
+ P + ++ A G+ +K++ + +
Sbjct: 140 GWGDGSDKDMLTEPEQYAQAALTAVSEGYDAIKVDTVAMDRHGNWNQQNLNGPLTDKILR 199
Query: 233 ADFDVLQAIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSG 291
+D + AI AV P I + + + A++ + ++G +E+PV + +
Sbjct: 200 LGYDRMAAIRDAVGPDVDIIAEMHAFTDTTSAIQFGRMIEELG--IFYYEEPVMPLNPAQ 257
Query: 292 LHDVSN 297
+ V++
Sbjct: 258 MKQVAD 263
|
| >3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A Length = 394 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 36/262 (13%), Positives = 79/262 (30%), Gaps = 39/262 (14%)
Query: 98 IRVELSNGCVGWGEVAV---VPLVTGDQTKALVKVREACQFLR-QSPPTTLNFALDEIAR 153
++V NG G GE L + + + + P ++ I
Sbjct: 34 VKVTDENGVYGLGEADGSPDAILAYANIETEHKWLTNITEKAIGRLP-----IEINAIWD 88
Query: 154 IL--------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASN----------SLS 195
+ +G++MAL D + +P ++L GG +
Sbjct: 89 AMYDATQWQGMRGLGMFALSGIDMALYDLAGKQLGVPAYQLLGGTNKDKVHPYLTLYPAI 148
Query: 196 TAITIPAVSPAEASELASKYCKLGFSTLKLNVG----RNITADFDVLQAI-HAVHPHCSF 250
V+ + L K +K+ V + L+ + +
Sbjct: 149 PVDASLDVAIKGYAPLLEKAKAHNIRAVKVCVPIKADWSTKEVAYYLRELRGILGHDTDM 208
Query: 251 ILDANEGYTS-EEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA 309
++D +T E +L + D+ E + DD SG + +T +
Sbjct: 209 MVDYLYRFTDWYEVARLLNSIEDLE--LYFAEATLQHDDLSGHAKL---VENT-RSRICG 262
Query: 310 DESCRSLNDVQKVMQENLASVV 331
E + + ++ + + ++
Sbjct: 263 AEMSTTRFEAEEWITKGKVHLL 284
|
| >3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP} Length = 422 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 2e-09
Identities = 37/271 (13%), Positives = 81/271 (29%), Gaps = 54/271 (19%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQT-KALVKVREACQFLRQSPPTTLNFALDEIARIL- 155
+RV G G G K LV + + ++++ +++
Sbjct: 47 VRVTTEQGITGHGCAT---FQQRPLAVKTLVDEYLQPLMIGRDA-----NNIEDLWQMMN 98
Query: 156 ------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAI----TIPAVSP 205
G + +GV+MAL D +PL++LFGG S AI +
Sbjct: 99 VNAYWRNGPLMNNAISGVDMALWDIKGQLAGMPLYQLFGGKSR---DAIPAYSHASGETL 155
Query: 206 AEASELASKYCKLGFSTLKLNVG------------------------RNITADFDVLQAI 241
G+ ++ +G ++ ++ A+
Sbjct: 156 EALFASVDALIAQGYRHIRCQLGFYGGTPSALHAPDNPTPGAWFDQQEYMSNTVEMFHAL 215
Query: 242 -HAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFAR 300
+ D +E ++AV++ +L P E + + L V +
Sbjct: 216 REKYGWKLHILHDVHERLFPQQAVQLAKQLEPFQ--PYFIEDILPPQQSAWLEQV---RQ 270
Query: 301 DTYGISVVADESCRSLNDVQKVMQENLASVV 331
+ + + E + + ++ +
Sbjct: 271 QS-CVPLALGELFNNPAEWHDLIVNRRIDFI 300
|
| >3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 3s47_A 3gy1_A Length = 401 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 3e-09
Identities = 36/270 (13%), Positives = 89/270 (32%), Gaps = 52/270 (19%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARIL-- 155
+ VE + G G+G K +V + ++ ++++ +++
Sbjct: 26 VVVETNEGVTGFGCATF--QQRPLAVKTMVDEYLKPILIGKNA-----NNIEDLWQMMMV 78
Query: 156 -----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAI----TIPAVSPA 206
G + +GV+MAL D A +PL +LFGG S AI + +
Sbjct: 79 NAYWRNGPVINNAISGVDMALWDIKAKLAGMPLHQLFGGKSR---DAIPVYTHATSDTME 135
Query: 207 EASELASKYCKLGFSTLKLNVG------------------------RNITADFDVLQAIH 242
+L + + G+ ++ +G + + + +++
Sbjct: 136 GIYDLVEGFLEKGYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLR 195
Query: 243 -AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARD 301
+ D +E +A++ ++ P E + + L ++ R
Sbjct: 196 EKYGNQFHILHDVHERLFPNQAIQFAKEVEQYK--PYFIEDILPPNQTEWLDNI----RS 249
Query: 302 TYGISVVADESCRSLNDVQKVMQENLASVV 331
+S+ E + + + ++ +
Sbjct: 250 QSSVSLGLGELFNNPEEWKSLIANRRIDFI 279
|
| >3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A* Length = 440 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 3e-08
Identities = 30/230 (13%), Positives = 64/230 (27%), Gaps = 55/230 (23%)
Query: 156 PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAI----TIPAVSPAEASEL 211
G + +G++MAL D +P++ L GG I E +
Sbjct: 106 NGPVMNNALSGIDMALWDIKGKQAGLPVYELLGGKCR---DGIALYVHTDGADEVEVEDS 162
Query: 212 ASKYCKLGFSTLKLNVG-----------------------------------------RN 230
A + G+ ++ +G
Sbjct: 163 ARAKMEEGYQYIRCQMGMYGGAGTDDLRLIANRMVKAKNIQPKRSPRTKAPGIYFDPEAY 222
Query: 231 ITADFDVLQAIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW 289
+ + + + + DA+E T A+ + L E PV ++
Sbjct: 223 AKSIPRLFDHLRNKLGFSVELLHDAHERITPINAIHMAKALEPYQ--LFFLEDPVAPENT 280
Query: 290 SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG 339
L + R + E ++N+ + ++ L + ++ G
Sbjct: 281 EWLKML----RQQSSTPIAMGELFVNVNEWKPLIDNKLIDYIRCHISSIG 326
|
| >2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941} Length = 410 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 5e-08
Identities = 39/255 (15%), Positives = 70/255 (27%), Gaps = 76/255 (29%)
Query: 98 IRVELSNGCVGWGEV-------AVVPLVTGDQTKALVKVREACQ------------FLRQ 138
+RV + G GE + +V + + +
Sbjct: 25 VRVWAGDE-HGLGECYPSAPAAGIHHIV--MNMEEQLLGEDPRDVERLYEKMRRWNIFTG 81
Query: 139 SPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASN------ 192
+ AL +G+E AL D +P++RL GGA
Sbjct: 82 GQAGAVITAL----------------SGIETALWDLAGKLQGVPVYRLLGGAFRRRVRLY 125
Query: 193 ------------SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVG------------ 228
S E +A + + GF +KL+V
Sbjct: 126 ADCNAGTVDAAAHHIEGGLFEEGSNEEYIAVAREAVERGFDAIKLDVDDITGPLHRDFWN 185
Query: 229 -----RNITADFDVLQAIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQ 282
R A + A+ AV P +D + + ++ + G + E+
Sbjct: 186 GAISPREHEAMVARVAAVREAVGPEVEVAIDMHGRFDIPSSIRFARAMEPFG--LLWLEE 243
Query: 283 PVHRDDWSGLHDVSN 297
P ++ L +V
Sbjct: 244 PTPPENLDALAEVRR 258
|
| >3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A* Length = 409 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 1e-07
Identities = 42/285 (14%), Positives = 80/285 (28%), Gaps = 69/285 (24%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVK-VREACQFLR-QSPPTTLNFALDEIARIL 155
+++ G VGW E G + + + + + L S +
Sbjct: 23 VKLTTDEGIVGWSEFDE-----GFGSPGVTAVIEQLGKRLVGASV-----MEHERFFAEA 72
Query: 156 -------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASN---------------S 193
G + +E AL+DA A ++++P + L GG +
Sbjct: 73 YCLTRPATGGVVSEGIGAIENALLDAKAKTLNVPCYELLGGKLRDRVPVYWSHCPTWRIN 132
Query: 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVG------------------------- 228
P A + + F +K N+
Sbjct: 133 HPKFFGPPVTDLDGVKRTAEEARERQFRAIKTNIFIHDDGPLHAWRPGFAVPFQPALNVD 192
Query: 229 -RNITADFDVLQAI-HAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHR 286
+ + L+A+ P +LD N E +++L +L D E
Sbjct: 193 RKVLRNLRAHLEALRDGAGPDVEILLDLNFNAKPEGYLKILRELADFD--LFWVEIDS-- 248
Query: 287 DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVV 331
GL V R+ + + E+ + + + N V
Sbjct: 249 YSPQGLAYV----RNHSPHPISSCETLFGIREFKPFFDANAVDVA 289
|
| >3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified} Length = 410 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 1e-07
Identities = 38/286 (13%), Positives = 82/286 (28%), Gaps = 68/286 (23%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLR-QSPPTTLNFALDEIARIL- 155
+ VE +G G GE +A++ + + ++ + I+ L
Sbjct: 23 VEVETEDGLTGLGET----FRGAQAVEAVL-HEQTAPAIIGRAA-----ENITSISSELL 72
Query: 156 -------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASN---------------- 192
S + V++AL D +PL GGA+
Sbjct: 73 NPYVGFGSSSAEVRAASAVDIALWDLAGQRAGVPLHVALGGAARDRVPVYATCAGYDFNT 132
Query: 193 ------------SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRN---------- 230
+ +A LA G++ +K+ +
Sbjct: 133 SLGGRRSIGSAELSTGPYDDQVAFMRDAGVLAESLVAEGYAAMKIWPFDDFASITPHHIS 192
Query: 231 ---ITADFDVLQAI-HAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHR 286
+ + + I AV + + + + + A + L D G + E P+ +
Sbjct: 193 LTDLKDGLEPFRKIRAAVGQRIEIMCELHSLWGTHAAARICNALADYG--VLWVEDPIAK 250
Query: 287 -DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVV 331
D+ + D+ R + E+ +++ + V
Sbjct: 251 MDNIPAVADL----RRQTRAPICGGENLAGTRRFHEMLCADAIDFV 292
|
| >3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4fi4_A 3thu_A Length = 425 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-07
Identities = 26/181 (14%), Positives = 63/181 (34%), Gaps = 25/181 (13%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREAC--QFLRQSPPTTLNFALDEIARIL 155
+++ +G G G+ + G + + +++ + + +++I +
Sbjct: 43 LKITTEDGITGVGDATL----NGRELSVVSFLQDHMVPSLIGRDA-----HQIEDIWQFF 93
Query: 156 -------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAI----TIPAVS 204
G + A V+MAL D +P+++L GGA T + +
Sbjct: 94 YRGSYWRGGPVAMTALAAVDMALWDIKGKVAGLPVYQLLGGACR---TGVTVYGHANGET 150
Query: 205 PAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAV 264
+ A KY +G+ ++L G A + + L +++ + +
Sbjct: 151 IEDTIAEAVKYKAMGYKAIRLQTGVPGLASTYGVSKDKMFYEPADNDLPTENIWSTAKYL 210
Query: 265 E 265
Sbjct: 211 N 211
|
| >3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A Length = 424 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 4e-07
Identities = 40/289 (13%), Positives = 85/289 (29%), Gaps = 65/289 (22%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREAC--QFLRQSPPTTLNFALDEIARIL 155
+++ G G G+ + G + + + + + + P +++I +
Sbjct: 42 LKIVTDQGIYGIGDATL----NGREKSVVSYLEDYLIPVLIGRDP-----QQIEDIWQFF 92
Query: 156 -------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAI----TIPAVS 204
G + A +++AL D A ++PL++L GG S I
Sbjct: 93 YRGAYWRRGPVGMTALAAIDVALWDIKAKLANMPLYQLLGGKSR---ERILSYTHANGKD 149
Query: 205 PAEASELASKYCKLGFSTLKLNVG---------------------------------RNI 231
E K G+ +++ G + +
Sbjct: 150 LDSTLEAVRKAKDKGYKAIRVQCGIPGIAKTYGVSTNTKSYEPADADLPSVEVWSTEKYL 209
Query: 232 TADFDVLQAIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWS 290
DV A+ P + D + T EA + L E V ++
Sbjct: 210 NYIPDVFAAVRKEFGPDIHLLHDVHHRLTPIEAARLGKALEPYH--LFWMEDAVPAENQE 267
Query: 291 GLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG 339
+ R + E S++D ++++Q + + G
Sbjct: 268 SFKLI----RQHTTTPLAVGEVFNSIHDCRELIQNQWIDYIRTTIVHAG 312
|
| >4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A Length = 400 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 8e-07
Identities = 35/251 (13%), Positives = 69/251 (27%), Gaps = 63/251 (25%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLR-QSPPTTLNFALDEIARIL- 155
+ V G G GE + + V + + P +D +A+ L
Sbjct: 20 VLVHTDEGITGLGETFF----GAETVETYVH-EYIAPRVIGRDP-----LQIDLLAQDLV 69
Query: 156 ------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASN----------------- 192
+ ++AL D + + P+ +L GG S
Sbjct: 70 GYLGFRSSGAEVRGNSAFDIALWDIFGKATNQPIAQLLGGFSRREIRTYNTCAGTEYIKK 129
Query: 193 -----------SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVG------------- 228
S A ELA + G + +K+
Sbjct: 130 ATGQQTANYGLSGGKDYDDLNGFLHRADELAHSLLEDGITAMKIWPFDAAAEKTRGQYIS 189
Query: 229 -RNITADFDVLQAIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHR 286
++ + + + I AV +++ + + A+++ L E P+
Sbjct: 190 MPDLKSALEPFEKIRKAVGDKMDIMVEFHSMWQLLPAMQIAKALTPYQ--TFWHEDPIKM 247
Query: 287 DDWSGLHDVSN 297
D S L +
Sbjct: 248 DSLSSLTRYAA 258
|
| >3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A* Length = 418 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 8e-07
Identities = 38/247 (15%), Positives = 70/247 (28%), Gaps = 61/247 (24%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREAC--QFLRQSPPTTLNFALDEIARIL 155
+++E G G G+ + G + + ++E + P +++I + +
Sbjct: 36 LKIETDQGVYGIGDATL----NGRELSVVAYLQEHVAPCLIGMDP-----RRIEDIWQYV 86
Query: 156 -------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAI----TIPAVS 204
G A V+MAL D A +PL++L GG S I
Sbjct: 87 YRGAYWRRGPVTMRAIAAVDMALWDIKAKMAGMPLYQLLGGRSR---DGIMVYGHANGSD 143
Query: 205 PAEASELASKYCKLGFSTLKLNVGRNITADF----------------------------- 235
AE E Y +G+ ++ G D
Sbjct: 144 IAETVEAVGHYIDMGYKAIRAQTGVPGIKDAYGVGRGKLYYEPADASLPSVTGWDTRKAL 203
Query: 236 ----DVLQAIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWS 290
+ + + + D + YT +EA + L E ++
Sbjct: 204 NYVPKLFEELRKTYGFDHHLLHDGHHRYTPQEAANLGKMLEPYQ--LFWLEDCTPAENQE 261
Query: 291 GLHDVSN 297
V
Sbjct: 262 AFRLVRQ 268
|
| >4e4f_A Mannonate dehydratase; magnesium binding, enzyme function initiative, isomerase; 2.00A {Pectobacterium carotovorum subsp} Length = 426 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 9e-07
Identities = 32/182 (17%), Positives = 67/182 (36%), Gaps = 25/182 (13%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLR-QSPPTTLNFALDEIARIL- 155
+++ +G G G+ + + A C L + +++I +
Sbjct: 42 LKITTDSGLTGLGDATLNG---RELPVASYLNDHVCPQLIGRDA-----HQIEDIWQYFY 93
Query: 156 ------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAI----TIPAVSP 205
G S + V+MAL D A + ++PL++L GGAS T + S
Sbjct: 94 KGAYWRRGPVTMSAISAVDMALWDIKAKAANMPLYQLLGGASR---TGVMVYCHTTGHSI 150
Query: 206 AEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH--PHCSFILDANEGYTSEEA 263
E + +K+ GF +++ G + + P L + +++E+
Sbjct: 151 DEVLDDYAKHRDQGFKAIRVQCGVPGMETTYGMAKGKGLAYEPATKGSLPEEQLWSTEKY 210
Query: 264 VE 265
++
Sbjct: 211 LD 212
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 7e-06
Identities = 64/486 (13%), Positives = 125/486 (25%), Gaps = 170/486 (34%)
Query: 4 VGSALFSPTCNFFFSPCVSRSLHRSQNVIKFCVSNVMAETTTVRTSERTSLGFKNLTETF 63
V L F SP + S + +R L N + F
Sbjct: 83 VEEVL-RINYKFLMSPIKTEQRQPSMMTRMY-------------IEQRDRL--YNDNQVF 126
Query: 64 W-VDVQRAEG-RELNVALSAPLSLGLSSVENV------------------ENVAIRVELS 103
+V R + +L AL L L +NV + ++ ++
Sbjct: 127 AKYNVSRLQPYLKLRQAL-----LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 104 NGCVGW---GEVAVVPLVTGDQTKALVKVR-EACQFLRQS--PPTTLNFALDEIARILPG 157
+ W V K L ++ S ++ E+ R+L
Sbjct: 182 FK-IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 158 SEFASVRAGVEMALI--DAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKY 215
+ + L+ V N+ W F +
Sbjct: 241 KPYEN-------CLLVLLNVQNA---KAWNAFNLS------------------------- 265
Query: 216 CKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGK-LN--- 271
CK+ +T R D L A H + + T +E +L K L+
Sbjct: 266 CKILLTT------RFK-QVTDFLSAATTTHI---SLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 272 -D------------MGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLN- 317
D + +I + W V + ++ + + S L
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLAT--WDNWKHV-----NCDKLTTIIESSLNVLEP 368
Query: 318 -DVQK------VMQENLASVVNIKLAKFGVLGTL---------QII--KATRKS------ 353
+ +K V + +I +L + ++ K + S
Sbjct: 369 AEYRKMFDRLSVFPPS----AHIPTI---LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 354 -----GLH-LMIDGMIETRLATGFALH--LAAGLGCIKYVNLNTPFLLSEDPFVGGCEVS 405
+ + ++ ++ +L +ALH + K + + D
Sbjct: 422 KESTISIPSIYLE--LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD--------- 470
Query: 406 GAIYNF 411
Y+
Sbjct: 471 QYFYSH 476
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 4e-04
Identities = 40/231 (17%), Positives = 67/231 (29%), Gaps = 55/231 (23%)
Query: 207 EASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEG-YTSEEAVE 265
E E +Y + L + +FD C + D + + EE
Sbjct: 10 ETGEHQYQYKDI----LSVFE-DAFVDNFD-----------CKDVQDMPKSILSKEEIDH 53
Query: 266 VLGKLNDMGVIPVLFEQPVHRDDW----SGLHDVSNFA----RDTYG--ISVVADESCR- 314
++ + + LF W V F R Y +S + E R
Sbjct: 54 IIMSKDAVSGTLRLF--------WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE-QRQ 104
Query: 315 -SLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIETRLATGFAL 373
S+ + Q + N AK+ V +R + ++E R A +
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNV---------SRLQPYLKLRQALLELRPAKNVLI 155
Query: 374 HLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIY--NFTNARGQGGFLK 422
G G K + LS C++ I+ N N L+
Sbjct: 156 DGVLGSG--KTW-VALDVCLSYKV---QCKMDFKIFWLNLKNCNSPETVLE 200
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 427 | |||
| 3u9i_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 100.0 | |
| 3q45_A | 368 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 3s5s_A | 389 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 3r0u_A | 379 | Enzyme of enolase superfamily; structural genomics | 100.0 | |
| 3ik4_A | 365 | Mandelate racemase/muconate lactonizing protein; s | 100.0 | |
| 3i4k_A | 383 | Muconate lactonizing enzyme; structural genomics, | 100.0 | |
| 3ro6_B | 356 | Putative chloromuconate cycloisomerase; TIM barrel | 100.0 | |
| 3dgb_A | 382 | Muconate cycloisomerase; muconate lactonizing enzy | 100.0 | |
| 3fcp_A | 381 | L-Ala-D/L-Glu epimerase, A muconate lactonizing en | 100.0 | |
| 3my9_A | 377 | Muconate cycloisomerase; structural genomics, PSI- | 100.0 | |
| 3i6e_A | 385 | Muconate cycloisomerase I; structural genomics, NY | 100.0 | |
| 3dg3_A | 367 | Muconate cycloisomerase; muconate lactonizing enzy | 100.0 | |
| 3fv9_G | 386 | Mandelate racemase/muconate lactonizing enzyme; st | 100.0 | |
| 3jva_A | 354 | Dipeptide epimerase; enolase superfamily, isomeras | 100.0 | |
| 4e8g_A | 391 | Enolase, mandelate racemase/muconate lactonizing e | 100.0 | |
| 3eez_A | 378 | Putative mandelate racemase/muconate lactonizing e | 100.0 | |
| 2chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Cupriavidus | 100.0 | |
| 1chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Ralstonia eu | 100.0 | |
| 3gd6_A | 391 | Muconate cycloisomerase; structural genomics, NYSG | 100.0 | |
| 1tkk_A | 366 | Similar to chloromuconate cycloisomerase; epimeras | 100.0 | |
| 3ozy_A | 389 | Putative mandelate racemase; beta-alpha barrel, en | 100.0 | |
| 3qld_A | 388 | Mandelate racemase/muconate lactonizing protein; s | 100.0 | |
| 4hpn_A | 378 | Putative uncharacterized protein; enolase, enzyme | 100.0 | |
| 2p8b_A | 369 | Mandelate racemase/muconate lactonizing enzyme fam | 100.0 | |
| 4h2h_A | 376 | Mandelate racemase/muconate lactonizing enzyme; en | 100.0 | |
| 1nu5_A | 370 | Chloromuconate cycloisomerase; enzyme, dehalogenat | 100.0 | |
| 4dye_A | 398 | Isomerase; enolase family protein, EFI, enzym func | 100.0 | |
| 2qde_A | 397 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 3ddm_A | 392 | Putative mandelate racemase/muconate lactonizing e | 100.0 | |
| 3toy_A | 383 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 3mwc_A | 400 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 1wue_A | 386 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 3tj4_A | 372 | Mandelate racemase; enolase, dehydratase, enzyme f | 100.0 | |
| 3ugv_A | 390 | Enolase; enzyme function initiative, EFI, lyase; 2 | 100.0 | |
| 1wuf_A | 393 | Hypothetical protein LIN2664; structural genomics, | 100.0 | |
| 2ps2_A | 371 | Putative mandelate racemase/muconate lactonizing e | 100.0 | |
| 4dwd_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 100.0 | |
| 2qdd_A | 378 | Mandelate racemase/muconate lactonizing enzyme; en | 100.0 | |
| 3vdg_A | 445 | Probable glucarate dehydratase; enolase, magnesium | 100.0 | |
| 4h83_A | 388 | Mandelate racemase/muconate lactonizing enzyme; st | 100.0 | |
| 3vc5_A | 441 | Mandelate racemase/muconate lactonizing protein; d | 100.0 | |
| 4h1z_A | 412 | Enolase Q92ZS5; dehydratase, magnesium binding sit | 100.0 | |
| 4e4u_A | 412 | Mandalate racemase/muconate lactonizing enzyme; ma | 100.0 | |
| 3sjn_A | 374 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 2rdx_A | 379 | Mandelate racemase/muconate lactonizing enzyme, P; | 100.0 | |
| 3rcy_A | 433 | Mandelate racemase/muconate lactonizing enzyme-LI | 100.0 | |
| 4e5t_A | 404 | Mandelate racemase / muconate lactonizing enzyme, | 100.0 | |
| 2zad_A | 345 | Muconate cycloisomerase; muconate lactonizing enzy | 100.0 | |
| 3sbf_A | 401 | Mandelate racemase / muconate lactonizing enzyme; | 100.0 | |
| 3v3w_A | 424 | Starvation sensing protein RSPA; enolase, enzyme f | 100.0 | |
| 3mkc_A | 394 | Racemase; metabolic process, PSI2, NYSGXRC, struct | 100.0 | |
| 3r4e_A | 418 | Mandelate racemase/muconate lactonizing enzyme; en | 100.0 | |
| 3mqt_A | 394 | Mandelate racemase/muconate lactonizing protein; P | 100.0 | |
| 3ijl_A | 338 | Muconate cycloisomerase; enolase superfamily, dipe | 100.0 | |
| 3va8_A | 445 | Probable dehydratase; enolase, magnesium binding s | 100.0 | |
| 3vcn_A | 425 | Mannonate dehydratase; enolase, magnesium binding | 100.0 | |
| 3tji_A | 422 | Mandelate racemase/muconate lactonizing enzyme, N | 100.0 | |
| 2zc8_A | 369 | N-acylamino acid racemase; octamer, TIM beta/alpha | 100.0 | |
| 1sjd_A | 368 | N-acylamino acid racemase; lyase, isomerase; HET: | 100.0 | |
| 2pgw_A | 384 | Muconate cycloisomerase; enolase superfamily, octa | 100.0 | |
| 2gdq_A | 382 | YITF; mandelate racemase/muconate lactonizing enzy | 100.0 | |
| 3t6c_A | 440 | RSPA, putative MAND family dehydratase; enolase, m | 100.0 | |
| 1r0m_A | 375 | N-acylamino acid racemase; isomerase; 1.30A {Deino | 100.0 | |
| 4hnl_A | 421 | Mandelate racemase/muconate lactonizing enzyme; de | 100.0 | |
| 1mdl_A | 359 | Mandelate racemase; isomerase, mandelate pathway, | 100.0 | |
| 3cyj_A | 372 | Mandelate racemase/muconate lactonizing enzyme-LI | 100.0 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 100.0 | |
| 3bjs_A | 428 | Mandelate racemase/muconate lactonizing enzyme; en | 100.0 | |
| 3rr1_A | 405 | GALD, putative D-galactonate dehydratase; enolase, | 100.0 | |
| 2nql_A | 388 | AGR_PAT_674P, isomerase/lactonizing enzyme; enolas | 100.0 | |
| 2qgy_A | 391 | Enolase from the environmental genome shotgun sequ | 100.0 | |
| 3v5c_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 4e4f_A | 426 | Mannonate dehydratase; magnesium binding, enzyme f | 100.0 | |
| 3p0w_A | 470 | Mandelate racemase/muconate lactonizing protein; s | 100.0 | |
| 1rvk_A | 382 | Isomerase/lactonizing enzyme; enolase superfamily, | 100.0 | |
| 3mzn_A | 450 | Glucarate dehydratase; lyase, structural genomics, | 100.0 | |
| 4dxk_A | 400 | Mandelate racemase / muconate lactonizing enzyme p | 100.0 | |
| 3stp_A | 412 | Galactonate dehydratase, putative; PSI biology, st | 100.0 | |
| 3go2_A | 409 | Putative L-alanine-DL-glutamate epimerase; structu | 100.0 | |
| 3pfr_A | 455 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 2og9_A | 393 | Mandelate racemase/muconate lactonizing enzyme; NY | 100.0 | |
| 4a35_A | 441 | Mitochondrial enolase superfamily member 1; isomer | 100.0 | |
| 2pp0_A | 398 | L-talarate/galactarate dehydratase; enolase superf | 100.0 | |
| 3dip_A | 410 | Enolase; structural genomics, isomerase, PSI-2, pr | 100.0 | |
| 2pge_A | 377 | MENC; OSBS, NYSGXRC, PSI-II, structural genomics, | 100.0 | |
| 3tcs_A | 388 | Racemase, putative; PSI-biology, nysgrc, structura | 100.0 | |
| 2o56_A | 407 | Putative mandelate racemase; dehydratase, structur | 100.0 | |
| 4g8t_A | 464 | Glucarate dehydratase; enolase, enzyme function IN | 100.0 | |
| 2gl5_A | 410 | Putative dehydratase protein; structural genomics, | 100.0 | |
| 2poz_A | 392 | Putative dehydratase; octamer, structural genomics | 100.0 | |
| 3p3b_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 2ox4_A | 403 | Putative mandelate racemase; enolase, dehydratase, | 100.0 | |
| 2okt_A | 342 | OSB synthetase, O-succinylbenzoic acid synthetase; | 100.0 | |
| 2oz8_A | 389 | MLL7089 protein; structural genomics, unknown func | 100.0 | |
| 2qq6_A | 410 | Mandelate racemase/muconate lactonizing enzyme- li | 100.0 | |
| 2hzg_A | 401 | Mandelate racemase/muconate lactonizing enzyme/EN | 100.0 | |
| 1tzz_A | 392 | Hypothetical protein L1841; structural genomics, m | 100.0 | |
| 3ekg_A | 404 | Mandelate racemase/muconate lactonizing enzyme; st | 100.0 | |
| 3fxg_A | 455 | Rhamnonate dehydratase; structural gemomics, enola | 100.0 | |
| 3caw_A | 330 | O-succinylbenzoate synthase; structural genomics, | 100.0 | |
| 4gfi_A | 329 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 1jpd_X | 324 | L-Ala-D/L-Glu epimerase; enolase superfamily, muco | 100.0 | |
| 2hxt_A | 441 | L-fuconate dehydratase; enolase superfamily, D-ery | 100.0 | |
| 2p3z_A | 415 | L-rhamnonate dehydratase; enolase, structural geno | 100.0 | |
| 1r6w_A | 322 | OSB synthase, O-succinylbenzoate synthase, OSBS; e | 100.0 | |
| 1kko_A | 413 | 3-methylaspartate ammonia-lyase; enolase superfami | 100.0 | |
| 1kcz_A | 413 | Beta-methylaspartase; beta zigzag, alpha/beta-barr | 100.0 | |
| 2ozt_A | 332 | TLR1174 protein; structural genomics, O-succinylbe | 100.0 | |
| 2opj_A | 327 | O-succinylbenzoate-COA synthase; TIM barrel, struc | 100.0 | |
| 2pa6_A | 427 | Enolase; glycolysis, lyase, magnesium, metal-bindi | 100.0 | |
| 2fym_A | 431 | Enolase; RNA degradosome, enolase, lyase; 1.60A {E | 100.0 | |
| 1w6t_A | 444 | Enolase; bacterial infection, surface protein, moo | 100.0 | |
| 2ptz_A | 432 | Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypano | 100.0 | |
| 3uj2_A | 449 | Enolase 1; enzyme function initiative, EFI, lyase; | 100.0 | |
| 3qn3_A | 417 | Enolase; structural genomics, center for structura | 100.0 | |
| 3tqp_A | 428 | Enolase; energy metabolism, lyase; 2.20A {Coxiella | 100.0 | |
| 2al1_A | 436 | Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: | 100.0 | |
| 2akz_A | 439 | Gamma enolase, neural; fluoride inhibition, negati | 100.0 | |
| 3qtp_A | 441 | Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Ent | 99.94 | |
| 3otr_A | 452 | Enolase; structural genomics, center for structura | 99.92 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 98.27 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 98.17 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 98.03 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 98.02 | |
| 1icp_A | 376 | OPR1, 12-oxophytodienoate reductase 1; beta-alpha- | 97.97 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 97.93 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 97.83 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 97.74 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 97.55 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 97.46 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 97.32 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 97.26 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 97.16 | |
| 2hsa_B | 402 | 12-oxophytodienoate reductase 3; alpha beta 8 barr | 97.08 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 96.29 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 96.03 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 96.0 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 95.78 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 95.23 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 95.16 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 95.02 | |
| 3l5a_A | 419 | NADH/flavin oxidoreductase/NADH oxidase; OLD yello | 94.52 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 94.47 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 94.41 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 94.13 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 93.44 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 93.16 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 93.1 | |
| 3noy_A | 366 | 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; | 92.76 | |
| 3lye_A | 307 | Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre | 92.71 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 92.35 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 92.32 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 92.15 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 91.61 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 91.6 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 91.51 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 91.3 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 90.97 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 90.87 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 90.71 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 90.58 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 90.5 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 90.3 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 90.12 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 89.95 | |
| 4a3u_A | 358 | NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET | 89.71 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 89.05 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 88.88 | |
| 4djd_D | 323 | C/Fe-SP, corrinoid/iron-sulfur protein small subun | 87.71 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 87.66 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 87.04 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 86.79 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 86.58 | |
| 3i4e_A | 439 | Isocitrate lyase; structural genomics, seattle str | 86.26 | |
| 2qiw_A | 255 | PEP phosphonomutase; structural genomics, joint ce | 85.16 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 84.82 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 84.57 | |
| 2yci_X | 271 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 82.35 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 82.2 | |
| 3n2t_A | 348 | Putative oxidoreductase; aldo/keto reductase super | 82.14 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 82.02 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 81.99 | |
| 2h9a_B | 310 | CO dehydrogenase/acetyl-COA synthase, iron- sulfur | 81.83 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 81.64 | |
| 3eol_A | 433 | Isocitrate lyase; seattle structural center for in | 80.8 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 80.64 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 80.32 |
| >3u9i_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, PSI-biology; 2.90A {Roseiflexus SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-76 Score=599.55 Aligned_cols=357 Identities=32% Similarity=0.510 Sum_probs=314.6
Q ss_pred CcceeeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHH-HHHHHHHHhhHhcCC
Q 014285 61 ETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTK-ALVKVREACQFLRQS 139 (427)
Q Consensus 61 ~~~~~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~-~~~~~~~~~~~l~g~ 139 (427)
.+-.|||++|+++++++|++.||.++.++.+.++.++|+|+|++|++|||||.+.|.+++++.+ ....++.++|.|+|+
T Consensus 23 m~~~mkI~~i~~~~~~~Pl~~p~~~a~g~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~e~~~~~~~~l~~l~p~l~G~ 102 (393)
T 3u9i_A 23 MTAPTTIRALTVAPLDIPLHEPFGIASGAQEVARNLLVAVELTDGTRGYGEAAPFPAFNGETQDMAHAAILAARSLVEGA 102 (393)
T ss_dssp -CCTTBEEEEEEEEEEEEBCC----------EEEEEEEEEEETTSCEEEEEECCCHHHHSCCHHHHHHHHHHTHHHHTTS
T ss_pred cccCcEEEEEEEEEEEEecCCceEccCceEEeeeEEEEEEEECCCCEEEEEeeCCCCcCcCCHHHHHHHHHHHHHHhcCC
Confidence 3344999999999999999999999999999999999999999999999999988766665433 334456789999999
Q ss_pred CCCCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecCCCHHHHHHHHHHHhhcC
Q 014285 140 PPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLG 219 (427)
Q Consensus 140 ~~~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~G 219 (427)
++.+++.+|+.|++...+ .+++++||||||||++||..|+|||+||||.++++|+|++++..+++++.+++++++++|
T Consensus 103 d~~~~~~~~~~l~~~~~~--~~~A~said~ALwDl~gK~~g~Pl~~LLGg~~~~v~~~~t~~~~~~e~~~~~a~~~~~~G 180 (393)
T 3u9i_A 103 DVREWRRIALALPALPGM--TGSARCAIETAILDALTRRARLPLWAFFGGAATSLETDVTITTGSVTAAARAAQAIVARG 180 (393)
T ss_dssp BGGGHHHHHHHGGGSTTC--CHHHHHHHHHHHHHHHHHHTTCBHHHHTTCSCSEEECCEEEC---CHHHHHHHHHHHTTT
T ss_pred CcCCHHHHHHHHHHhcCc--cHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceEEEEEecCCCHHHHHHHHHHHHHcC
Confidence 999999999999765443 368999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeccCC---------chhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHh--hhCCCCCceEeCCCCCCC
Q 014285 220 FSTLKLNVGRN---------ITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKL--NDMGVIPVLFEQPVHRDD 288 (427)
Q Consensus 220 f~~iKlKiG~~---------~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L--~~~~l~~~~iEqP~~~~d 288 (427)
|++||+|+|.+ +++|++++++||+..|++.||||||++|++++|++++++| +++++ .|||||++++|
T Consensus 181 f~~iKlKvg~~~~~~~~~~~~~~di~~v~avR~a~~d~~L~vDaN~~w~~~~A~~~~~~L~~~~~~i--~~iEeP~~~~d 258 (393)
T 3u9i_A 181 VTTIKIKIGAGDPDATTIRTMEHDLARIVAIRDVAPTARLILDGNCGYTAPDALRLLDMLGVHGIVP--ALFEQPVAKDD 258 (393)
T ss_dssp CCEEEEECC-------CHHHHHHHHHHHHHHHHHSTTSEEEEECCSCCCHHHHHHHHHTTTTTTCCC--SEEECCSCTTC
T ss_pred CCeEEEEeCCCcccccccccHHHHHHHHHHHHHHCCCCeEEEEccCCCCHHHHHHHHHHHhhCCCCe--EEEECCCCCCc
Confidence 99999999975 8899999999999878999999999999999999999999 88887 59999999999
Q ss_pred hhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhH
Q 014285 289 WSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRL 367 (427)
Q Consensus 289 ~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~i 367 (427)
+++|++|++ ++++|||+||++.+..+++++++.+++|++|+|+++ | ++++++++++|+++|+++++||++||+|
T Consensus 259 ~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~i~~k~~~-GGit~~~~ia~~A~~~gi~~~~~~~~es~i 333 (393)
T 3u9i_A 259 EEGLRRLTA----TRRVPVAADESVASATDAARLARNAAVDVLNIKLMK-CGIVEALDIAAIARTAGLHLMIGGMVESLL 333 (393)
T ss_dssp TTHHHHHHH----TCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECHHH-HCHHHHHHHHHHHHHHTCEEEECCSSCCHH
T ss_pred HHHHHHHHh----hCCCcEEeCCcCCCHHHHHHHHHcCCCCEEEecccc-cCHHHHHHHHHHHHHcCCeEEecCCcccHH
Confidence 999999986 789999999999999999999999999999999999 9 9999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCcceeccCCCcccccCCCCCceeeeCcEEecCC-CCCcccccCCCcC
Q 014285 368 ATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTN-ARGQGGFLKWTIV 426 (427)
Q Consensus 368 g~~a~~hlaaal~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~-~pGlGve~d~~~v 426 (427)
|+++++|++++++|+.|.|+++++.+.++++.+++.++||++.+|+ +||||||+|+++|
T Consensus 334 g~aa~~hlaaa~p~~~~~el~~~~~~~~d~~~~~~~~~~G~i~~p~~~PGlGve~d~~~l 393 (393)
T 3u9i_A 334 AMTVSACFAAGQGGFRFVDLDTPLFLAENPFDGGMTYHGGTIDLTLIEAGHGVTPRSPAL 393 (393)
T ss_dssp HHHHHHHHHHHHCCEEEECCCGGGSBSCCCEEESCEEETTEEECTTCCSBTCEEEC----
T ss_pred HHHHHHHHHhcCCCCCeecccchhhhhhcccCCCceeECCEEECCCCCCcCCcccCcccC
Confidence 9999999999999999999999988888998888999999999999 9999999999975
|
| >3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-75 Score=588.39 Aligned_cols=354 Identities=24% Similarity=0.403 Sum_probs=331.9
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHH-HHHHHHHHhhHhcCCCCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTK-ALVKVREACQFLRQSPPTT 143 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~-~~~~~~~~~~~l~g~~~~~ 143 (427)
|||++++++.+++|+++||.++.++++.++.++|+|+|++|++|||||.+.|.+++++.+ ....++.+.|.|+|+++.+
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~l~~~l~G~d~~~ 80 (368)
T 3q45_A 1 MIITQVELYKSPVKLKEPFKISLGILTHANNVIVRIHTASGHIGYGECSPFMTIHGESMDTAFIVGQYLAKGLIGTSCLD 80 (368)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTCCEEEEEECCCHHHHSCCHHHHHHHHHHHHHHHTTSBTTC
T ss_pred CEEEEEEEEEEEeecCCCEEccCceEeeeeEEEEEEEECCCCEEEeeccCCCCcCCCCHHHHHHHHHHHHHHhcCCChhh
Confidence 899999999999999999999999999999999999999999999999987766654433 3344567899999999999
Q ss_pred HHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCce-eeeeeecCCCHHHHHHHHHHHhhcCCcE
Q 014285 144 LNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSL-STAITIPAVSPAEASELASKYCKLGFST 222 (427)
Q Consensus 144 ~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~i-p~~~~i~~~~~~~~~~~~~~~~~~Gf~~ 222 (427)
++.+|+.|++.+.++ +++++||||||||++||..|+|||+||||.++++ |+|+++++.+++++.+++++++++||++
T Consensus 81 ~~~~~~~l~~~~~~~--~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~v~~~~~~~~~~~~e~~~~~a~~~~~~G~~~ 158 (368)
T 3q45_A 81 IVSNSLLMDAIIYGN--SCIKSAFNIALYDLAAQHAGLPLYAFLGGKKDKIIQTDYTVSIDEPHKMAADAVQIKKNGFEI 158 (368)
T ss_dssp HHHHHHHHHHHCSCC--HHHHHHHHHHHHHHHHHHHTSBHHHHTTCCCCSCEEBCEEECSCCHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCeeeeeEEEecCCCHHHHHHHHHHHHHcCCCe
Confidence 999999998876554 5799999999999999999999999999998889 9999999999999999999999999999
Q ss_pred EEEeccCCchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhcc
Q 014285 223 LKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARD 301 (427)
Q Consensus 223 iKlKiG~~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~ 301 (427)
||+|+|.++++|++++++||+ .++++.|+||||++|++++|++++++|+++++ .|||||++++|++++++|++
T Consensus 159 ~K~KvG~~~~~d~~~v~avR~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEqP~~~~~~~~~~~l~~---- 232 (368)
T 3q45_A 159 IKVKVGGSKELDVERIRMIREAAGDSITLRIDANQGWSVETAIETLTLLEPYNI--QHCEEPVSRNLYTALPKIRQ---- 232 (368)
T ss_dssp EEEECCSCHHHHHHHHHHHHHHHCSSSEEEEECTTCBCHHHHHHHHHHHGGGCC--SCEECCBCGGGGGGHHHHHH----
T ss_pred EEEEecCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCChHHHHHHHHHHhhcCC--CEEECCCChhHHHHHHHHHh----
Confidence 999999999999999999999 57999999999999999999999999999997 49999999999999999986
Q ss_pred ccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcC
Q 014285 302 TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLG 380 (427)
Q Consensus 302 ~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~ 380 (427)
++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++||++||+|+++|++|++++++
T Consensus 233 ~~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~~es~i~~aa~~hlaaa~p 312 (368)
T 3q45_A 233 ACRIPIMADESCCNSFDAERLIQIQACDSFNLKLSKSAGITNALNIIRLAEQAHMPVQVGGFLESRLGFTAAAHVALVSK 312 (368)
T ss_dssp TCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECTTTTTSHHHHHHHHHHHHHTTCCEEECCSSCCHHHHHHHHHHHTTCT
T ss_pred hCCCCEEEcCCcCCHHHHHHHHHcCCCCeEEechhhcCCHHHHHHHHHHHHHcCCcEEecCccccHHHHHHHHHHHHcCC
Confidence 68999999999999999999999999999999999997 99999999999999999999999999999999999999999
Q ss_pred CcceeccCCCcccccCCCCCceeeeCc-EEecCCCCCcccccCCCcC
Q 014285 381 CIKYVNLNTPFLLSEDPFVGGCEVSGA-IYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 381 ~~~~~e~~~p~~~~~~~~~~~~~~~~G-~i~~p~~pGlGve~d~~~v 426 (427)
|..++|+++|+.+.+|++.+++.++|| ++.+|++||||+|+|+++|
T Consensus 313 ~~~~~el~~~~~~~~d~~~~~~~~~~gG~i~~p~~PGlGv~~d~~~l 359 (368)
T 3q45_A 313 TICYYDFDTPLMFEADPVRGGIVYQQRGIIEVPETAGLGAGYQKDYL 359 (368)
T ss_dssp TEEEECCCGGGGBSSCCEEESCEECGGGEEECCCSSBSCEEECTTTG
T ss_pred CCceeccccHHhhhhccccCCceecCCeEEEcCCCCccceeeCHHHH
Confidence 999999999988888988888889988 9999999999999999986
|
| >3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium; 2.40A {Sorangium cellulosum} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-76 Score=595.20 Aligned_cols=355 Identities=35% Similarity=0.566 Sum_probs=327.7
Q ss_pred eeeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHH-HHHHHHHHhhHhcCCCCC
Q 014285 64 WVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTK-ALVKVREACQFLRQSPPT 142 (427)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~-~~~~~~~~~~~l~g~~~~ 142 (427)
.|||++|+++++++|++.||.++.++.+.++.++|+|+|++|++|||||.+.|.+++++.+ ....++.+.|.|+|+++.
T Consensus 4 ~mkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~l~td~G~~G~GE~~~~~~~~~e~~~~~~~~l~~l~~~l~G~d~~ 83 (389)
T 3s5s_A 4 PTLIRRVSIEALDIPLHEPFGIAGGAQERAANLLVTVELADGTLGFGEAAPLPAFNGETQDGSRAAAVSLREAVVGSDAR 83 (389)
T ss_dssp TTBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECCCHHHHSCCHHHHHHHHHHTHHHHTTSBGG
T ss_pred CCEEEEEEEEEEEEecCCceeccCceEEeeeEEEEEEEECCCCEEEEeccCCCCcCccCHHHHHHHHHHHHHHhcCCCcc
Confidence 3899999999999999999999999999999999999999999999999988766665433 334456789999999999
Q ss_pred CHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecCCCHHHHHHHHHHHhhcCCcE
Q 014285 143 TLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFST 222 (427)
Q Consensus 143 ~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~ 222 (427)
+++.+|+.|++.+.+.. .++++|||||||||+||..|+|||+||||.++++|+|++++..+++++.+++++++++||++
T Consensus 84 ~~~~~~~~l~~~~~~~~-~~A~said~ALwDl~gk~~g~Pl~~LLGg~~~~v~~~~t~~~~~~e~~~~~a~~~~~~G~~~ 162 (389)
T 3s5s_A 84 AWRAVARALREASGGGA-GAARCAIETAILDALTKRAGMPLWAFFGGSGTALTTDITITTGSPERAEEAARRAAAMGFRA 162 (389)
T ss_dssp GHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHTTTCBHHHHTTCSCSEEECCEEECSSCSHHHHHHHHHHHHHTCCE
T ss_pred CHHHHHHHHHHhhccCh-HHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceEEEeeecCCCHHHHHHHHHHHHHcCCCe
Confidence 99999999987654442 27899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCC-chhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHh--hhCCCCCceEeCCCCCCChhhHHHHHHhh
Q 014285 223 LKLNVGRN-ITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKL--NDMGVIPVLFEQPVHRDDWSGLHDVSNFA 299 (427)
Q Consensus 223 iKlKiG~~-~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L--~~~~l~~~~iEqP~~~~d~~~~~~L~~~~ 299 (427)
||+|+|.+ +++|++++++||+..|++.||||||++|++++|++++++| +++++ .|||||++++|++++++|++
T Consensus 163 iKlKvg~~~~~~d~~~v~avR~~~~~~~L~vDaN~~w~~~~A~~~~~~L~~~~~~i--~~iEeP~~~~d~~~~~~l~~-- 238 (389)
T 3s5s_A 163 LKVKVGGRLAASDPARIEAIHAAAPGASLILDGNGGLTAGEALALVAHARRLGADV--ALLEQPVPRDDWDGMKEVTR-- 238 (389)
T ss_dssp EEEECCGGGTTTHHHHHHHHHHHCTTCEEEEECTTCSCHHHHHHHHHHHHHTTCEE--EEEECCSCTTCHHHHHHHHH--
T ss_pred EEEEecCCChHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHhhCCCCe--EEEECCCCcccHHHHHHHHh--
Confidence 99999975 8999999999999878999999999999999999999999 88876 59999999999999999986
Q ss_pred ccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhh
Q 014285 300 RDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAG 378 (427)
Q Consensus 300 r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaa 378 (427)
++++|||+||++.+..+++++++.+++|++|+|+++ | ++++++++++|+++|+++++||++||+||+++++|++++
T Consensus 239 --~~~iPIa~dEs~~~~~~~~~~i~~~a~d~v~~k~~~-GGit~~~~i~~~A~~~gi~~~~~~~~es~ig~aa~~hlaaa 315 (389)
T 3s5s_A 239 --RAGVDVAADESAASAEDVLRVAAERAATVVNIKLMK-GGIAEALDIAAVARAAGLGLMIGGMVESVLAMTASACFAAG 315 (389)
T ss_dssp --HSSSCEEESTTCSSHHHHHHHHHTTCCSEEEECHHH-HHHHHHHHHHHHHHHTTCEEEECCSSCCHHHHHHHHHHHHH
T ss_pred --hCCCCEEECCCCCCHHHHHHHHHcCCCCEEEecCCC-CCHHHHHHHHHHHHHcCCeEEecCCcccHHHHHHHHHHHhh
Confidence 689999999999999999999999999999999999 9 999999999999999999999999999999999999999
Q ss_pred cCCcceeccCCCcccccCCCCCceeeeCcEEecCC-CCCcccccCCCcC
Q 014285 379 LGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTN-ARGQGGFLKWTIV 426 (427)
Q Consensus 379 l~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~-~pGlGve~d~~~v 426 (427)
++|+.|.|++++..+.++++.+++.++||++.+|+ +||||||+|+++|
T Consensus 316 ~p~~~~~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~~PGlGve~d~~~~ 364 (389)
T 3s5s_A 316 LGGFSFVDLDTPLFLAENPFDGGFVQRGPALSLEGIRAGHGVTPQRRSP 364 (389)
T ss_dssp HCCEEEECCCGGGGBSCCCEECSCEEETTEEECTTCCSBTCCEEC----
T ss_pred CCCCCeeeccchhhhhhccccCCceeECCEEECCCCCCcCCcccCHHHH
Confidence 99999999999988888999889999999999999 9999999999986
|
| >3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-75 Score=589.13 Aligned_cols=354 Identities=22% Similarity=0.336 Sum_probs=329.7
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHH-HHHHHH-HhhHhcCCCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKA-LVKVRE-ACQFLRQSPPT 142 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~-~~~~~~-~~~~l~g~~~~ 142 (427)
|||++|+++.+++|++.||+++.++.+.++.++|+|+|++|++||||+.+.+.+++++.+. ...+++ +.|.|+|+++.
T Consensus 3 MkI~~i~~~~~~~Pl~~p~~~a~~~~~~~~~~~V~v~td~G~~G~Ge~~~~~~~~get~~~~~~~i~~~l~p~l~G~d~~ 82 (379)
T 3r0u_A 3 SKIIDIKTSIIKIPLKRTFITAVRSTNHIDSLAVELTLDNGVKGYGVAPATTAITGDTLQGMQYIIREIFAPVILGSDLS 82 (379)
T ss_dssp CBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEEECCHHHHCCCHHHHHHHHHHTTHHHHTTCBGG
T ss_pred CEEEEEEEEEEEeecCCceEccCceEEEeEEEEEEEEECCCCEEEEEEECCCCccCCCHHHHHHHHHHHhHHHhcCCCcc
Confidence 8999999999999999999999999999999999999999999999999876565654433 333454 78999999999
Q ss_pred CHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecCCCHHHHHHHHHHHhhcCCcE
Q 014285 143 TLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFST 222 (427)
Q Consensus 143 ~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~ 222 (427)
+++.+|+.|++...+ .+++++|||||||||+||..|+|||+||||.+++||+|++++..+++++.+++++++++||++
T Consensus 83 ~~~~~~~~~~~~~~~--~~~A~said~ALwDl~gK~~g~Pv~~LLGg~r~~v~~y~t~g~~~~e~~~~~a~~~~~~Gf~~ 160 (379)
T 3r0u_A 83 DYKQTLELAFKKVMF--NSAAKMAIDLAYHDLLAKEQDISVAKLLGAKANSIVTDVSISCGNVAETIQNIQNGVEANFTA 160 (379)
T ss_dssp GHHHHHHHHHTTCSS--CHHHHHHHHHHHHHHHHHHTTSBHHHHTTCCCCEEEBCEEECCCCHHHHHHHHHHHHHTTCCE
T ss_pred cHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCeEEEEEEecCCCHHHHHHHHHHHHHcCCCE
Confidence 999999999875443 367999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCchhhHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHhhh--CCCCCceEeCCCCCCChhhHHHHHHhh
Q 014285 223 LKLNVGRNITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLND--MGVIPVLFEQPVHRDDWSGLHDVSNFA 299 (427)
Q Consensus 223 iKlKiG~~~~~d~~~l~~ir~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~--~~l~~~~iEqP~~~~d~~~~~~L~~~~ 299 (427)
||+|+|.++++|++++++||+. ++++.|+||||++|++++|++++++|++ +++ .|||||++++|++++++|++
T Consensus 161 ~KlK~g~~~~~d~~~v~avR~a~g~~~~L~vDaN~~w~~~~A~~~~~~l~~~~~~l--~~iEeP~~~~d~~~~~~l~~-- 236 (379)
T 3r0u_A 161 IKVKTGADFNRDIQLLKALDNEFSKNIKFRFDANQGWNLAQTKQFIEEINKYSLNV--EIIEQPVKYYDIKAMAEITK-- 236 (379)
T ss_dssp EEEECSSCHHHHHHHHHHHHHHCCTTSEEEEECTTCCCHHHHHHHHHHHHTSCCCE--EEEECCSCTTCHHHHHHHHH--
T ss_pred EeeecCCCHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCCc--EEEECCCCcccHHHHHHHHh--
Confidence 9999999999999999999995 6799999999999999999999999999 665 69999999999999999986
Q ss_pred ccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhh
Q 014285 300 RDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAG 378 (427)
Q Consensus 300 r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaa 378 (427)
++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++||++||+|+++|++|++++
T Consensus 237 --~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GGi~~~~~ia~~A~~~gi~~~~~~~~es~i~~aa~~hlaaa 314 (379)
T 3r0u_A 237 --FSNIPVVADESVFDAKDAERVIDEQACNMINIKLAKTGGILEAQKIKKLADSAGISCMVGCMMESPAGILATASFALA 314 (379)
T ss_dssp --HCSSCEEESTTCSSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCSCCHHHHHHHHHHHHH
T ss_pred --cCCCCEEeCCccCCHHHHHHHHHcCCCCEEEECccccCCHHHHHHHHHHHHHcCCEEEEeCCCccHHHHHHHHHHHhC
Confidence 68999999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred cCCcceeccCCCcccccCCCCCceeeeCcEEecCC-CCCcccccCCCcCC
Q 014285 379 LGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTN-ARGQGGFLKWTIVS 427 (427)
Q Consensus 379 l~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~-~pGlGve~d~~~v~ 427 (427)
+|+.+.|+++|..+.+|++.+++.++||++.+|+ +||||||+|+++|.
T Consensus 315 -p~~~~~eld~~~~~~~d~~~~~~~~~~G~i~~p~~~PGLGveld~~~~~ 363 (379)
T 3r0u_A 315 -EDITVADLDPLDWVAKDLYSDYITFNEPNIILKDNLKGFGFNLAENLYF 363 (379)
T ss_dssp -TTCCCBCCGGGGGSCGGGTTTTEEEETTEEEECTTCSBTSCCCHHHHTC
T ss_pred -CCCCeeecCchhhhhhccccCCceEECCEEEcCCCCCccceeECHHHHh
Confidence 9999999999988888999999999999999999 89999999998763
|
| >3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-74 Score=580.98 Aligned_cols=349 Identities=33% Similarity=0.561 Sum_probs=320.6
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHH-HHHHHHHHhhHhcCCCCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTK-ALVKVREACQFLRQSPPTT 143 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~-~~~~~~~~~~~l~g~~~~~ 143 (427)
|||++++++++++|+++||.++.++.+.++.++|+|+|++|++|||||.+.|.|++++.+ ....++.+.|.|+|+++.+
T Consensus 5 mkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~l~td~G~~G~GE~~~~~~~~~e~~~~~~~~l~~l~~~l~G~d~~~ 84 (365)
T 3ik4_A 5 TTIQAISAEAINLPLTEPFAIASGAQAVAANVLVKVQLADGTLGLGEAAPFPAVSGETQTGTSAAIERLQSHLLGADVRG 84 (365)
T ss_dssp TBEEEEEEEEEEEEBSCC--------CEEEEEEEEEEETTSCEEEEEECCCCTTTCCCHHHHHHHHHHHGGGTTTCBGGG
T ss_pred CEEEEEEEEEEEEecCCCeEccCeEEEeeeEEEEEEEECCCCEEEEecccCCCcCcCCHHHHHHHHHHHHHHHcCCCccC
Confidence 899999999999999999999999999999999999999999999999998888775433 3344567899999999999
Q ss_pred HHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecCCCHHHHHHHHHHHhhcCCcEE
Q 014285 144 LNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTL 223 (427)
Q Consensus 144 ~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~i 223 (427)
++.+|+.|++.+.+. +++++||||||||++||..|+|||+||||.++++|+|++++..+++++.+++++++++||++|
T Consensus 85 ~~~~~~~l~~~~~~~--~~a~said~ALwDl~gk~~g~Pl~~LLGg~~~~v~~~~~~~~~~~e~~~~~a~~~~~~G~~~i 162 (365)
T 3ik4_A 85 WRKLAAMLDHAEHEA--AAARCGLEMAMLDALTRHYHMPLHVFFGGVSKQLETDMTITAGDEVHAAASAKAILARGIKSI 162 (365)
T ss_dssp HHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHHTTCBHHHHTTCSCSEEEBCEEECCSCHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceeeeEEecCCCHHHHHHHHHHHHHcCCCEE
Confidence 999999998766543 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCC-chhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHh--hhCCCCCceEeCCCCCCChhhHHHHHHhhc
Q 014285 224 KLNVGRN-ITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKL--NDMGVIPVLFEQPVHRDDWSGLHDVSNFAR 300 (427)
Q Consensus 224 KlKiG~~-~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L--~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r 300 (427)
|+|+|.+ +++|++++++||+..|++.||||||++|++++|++++++| +++++ .|||||++++|++++++|++
T Consensus 163 K~Kvg~~~~~~d~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~L~~~~~~i--~~iEeP~~~~d~~~~~~l~~--- 237 (365)
T 3ik4_A 163 KVKTAGVDVAYDLARLRAIHQAAPTAPLIVDGNCGYDVERALAFCAACKAESIPM--VLFEQPLPREDWAGMAQVTA--- 237 (365)
T ss_dssp EEECCSSCHHHHHHHHHHHHHHSSSCCEEEECTTCCCHHHHHHHHHHHHHTTCCE--EEEECCSCTTCHHHHHHHHH---
T ss_pred EEEeCCCCHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHhhCCCCc--eEEECCCCcccHHHHHHHHh---
Confidence 9999985 8999999999999878899999999999999999999999 88886 59999999999999999986
Q ss_pred cccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhc
Q 014285 301 DTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGL 379 (427)
Q Consensus 301 ~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal 379 (427)
++++||++||++.+..+++++++.+++|++|+|+++ | ++++++++++|+++|+++++||++||+||+++++|+++++
T Consensus 238 -~~~ipIa~dE~~~~~~~~~~~i~~~a~d~v~ik~~~-GGit~~~~i~~~A~~~gi~~~~~~~~es~ig~aa~~hlaaa~ 315 (365)
T 3ik4_A 238 -QSGFAVAADESARSAHDVLRIAREGTASVINIKLMK-AGVAEGLKMIAIAQAAGLGLMIGGMVESILAMSFSANLAAGN 315 (365)
T ss_dssp -HSSSCEEESTTCSSHHHHHHHHHHTCCSEEEECHHH-HCHHHHHHHHHHHHHHTCEEEECCSSCCHHHHHHHHHHHHHH
T ss_pred -hCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEcCCc-cCHHHHHHHHHHHHHcCCeEEecCCcccHHHHHHHHHHHHhC
Confidence 689999999999999999999999999999999999 9 9999999999999999999999999999999999999999
Q ss_pred CCcceeccCCCcccccCCCCCceeeeCcEEecCCCCCcccccC
Q 014285 380 GCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLK 422 (427)
Q Consensus 380 ~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d 422 (427)
+|+.|.|+++++.+.+|++.+++.++||++.+|++||||+|+.
T Consensus 316 p~~~~~el~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGve~~ 358 (365)
T 3ik4_A 316 GGFDFIDLDTPLFIAEHPFIGGFAQTGGTLQLADVAGHGVNLE 358 (365)
T ss_dssp CCEEEECCCGGGGBSCCSEEESCEEETTEEECCSCSBTCEEEC
T ss_pred CCCCeeccccchhhhhcccCCCceeECCEEECCCCCccCCCCC
Confidence 9999999999988889999889999999999999999999986
|
| >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-73 Score=578.41 Aligned_cols=354 Identities=24% Similarity=0.354 Sum_probs=329.8
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecC--CCCCcchHHH-HHHHHH-HhhHhcCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTKA-LVKVRE-ACQFLRQSP 140 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~--~~~s~~~~~~-~~~~~~-~~~~l~g~~ 140 (427)
|||++|+++.+++|++.||.++.++++.++.++|+|+|++|++|||||.+. |.|++++.+. ...+++ +.|.|+|++
T Consensus 6 MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~p~l~G~d 85 (383)
T 3i4k_A 6 LTIQKVESRILDVPLIRPHGFATTTSTEQHILLVSVHLENGVIGYGEGVVPGGPWWGGESVETMKALVDGYLAPVLIGRA 85 (383)
T ss_dssp CBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEECCSSSTTTTSCCHHHHHHHHHHTTHHHHTTSB
T ss_pred CEEEEEEEEEEeccccCCeEecceEEEeeeEEEEEEEECCCCEEEEecccCCCCccCCCCHHHHHHHHHhhhhHHHcCCC
Confidence 999999999999999999999999999999999999999999999999887 5576654443 333444 789999999
Q ss_pred CCCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhhc-
Q 014285 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKL- 218 (427)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~- 218 (427)
+.+++.+|+.|++.+.|. +++++|||+|||||+||..|+|||+||||. +++||+|++++..+++++.+++++++++
T Consensus 86 ~~~~~~~~~~l~~~~~~~--~~A~said~ALwDl~gk~~g~Pv~~LLGg~~r~~v~~~~t~~~~~~~~~~~~a~~~~~~~ 163 (383)
T 3i4k_A 86 VSELAGIMADLERVVARA--RYAKAAVDVAMHDAWARSLNVPVRDLLGGTVRDKVDVTWALGVLPLDVAVAEIEERIEEF 163 (383)
T ss_dssp GGGHHHHHHHHHHHCCSC--HHHHHHHHHHHHHHHHHHTTSBGGGGTTCCSCSEEEBCEEECSCCHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCCeEEEeEEeeCCCHHHHHHHHHHHHHhc
Confidence 999999999998877654 578999999999999999999999999996 7899999999999999999999998887
Q ss_pred CCcEEEEeccC-CchhhHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHH
Q 014285 219 GFSTLKLNVGR-NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVS 296 (427)
Q Consensus 219 Gf~~iKlKiG~-~~~~d~~~l~~ir~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~ 296 (427)
||++||+|+|. ++++|++++++||+. ++++.|+||+|++|++++|++++++|+++++ .|||||++++|++++++|+
T Consensus 164 G~~~~K~Kvg~~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~ 241 (383)
T 3i4k_A 164 GNRSFKLKMGAGDPAEDTRRVAELAREVGDRVSLRIDINARWDRRTALHYLPILAEAGV--ELFEQPTPADDLETLREIT 241 (383)
T ss_dssp CCSEEEEECCSSCHHHHHHHHHHHHHTTTTTSEEEEECTTCSCHHHHHHHHHHHHHTTC--CEEESCSCTTCHHHHHHHH
T ss_pred CCcEEEEeeCCCCHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCC--CEEECCCChhhHHHHHHHH
Confidence 99999999997 899999999999995 7899999999999999999999999999997 4999999999999999998
Q ss_pred HhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHH
Q 014285 297 NFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHL 375 (427)
Q Consensus 297 ~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hl 375 (427)
+ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+++||+|+++|++|+
T Consensus 242 ~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i~~aa~~hl 317 (383)
T 3i4k_A 242 R----RTNVSVMADESVWTPAEALAVVKAQAADVIALKTTKHGGLLESKKIAAIAEAGGLACHGATSLEGPIGTAASLQF 317 (383)
T ss_dssp H----HHCCEEEESTTCSSHHHHHHHHHHTCCSEEEECTTTTTSHHHHHHHHHHHHHTTCEEEECCSCCCHHHHHHHHHH
T ss_pred h----hCCCCEEecCccCCHHHHHHHHHcCCCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEeCCCCccHHHHHHHHHH
Confidence 6 68999999999999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred HhhcCCcce-eccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 376 AAGLGCIKY-VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 376 aaal~~~~~-~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+++++|+.+ .|+++|+.+.++++.+++.++||++.+|++||||+|+|+++|
T Consensus 318 aaa~p~~~~~~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l 369 (383)
T 3i4k_A 318 AASTKAISYGTELFGPQLLKDTYIVQEFEYKDGQVAIPQGPGLGVDVDMDKV 369 (383)
T ss_dssp HHHCTTEEEEECCCHHHHBSSCSSSSCCCEETTEEECCCSSBTSCCCCHHHH
T ss_pred HHcCCCCCccccccchhhhhhhccCCCceeeCCEEECCCCCCcceeeCHHHH
Confidence 999999988 799988777889999999999999999999999999999865
|
| >3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-74 Score=578.83 Aligned_cols=351 Identities=25% Similarity=0.369 Sum_probs=317.0
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHH-HHHHHH-HhhHhcCCCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKA-LVKVRE-ACQFLRQSPPT 142 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~-~~~~~~-~~~~l~g~~~~ 142 (427)
|||++++++.+++|++.||.++.++.+.++.++|+|+|++|++|||||.+.+.+++++.+. ...+++ +.|.|+|+++.
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~e~~~~~~~~l~~~l~~~l~G~~~~ 80 (356)
T 3ro6_B 1 MKIADIQVRTEHFPLTRPYRIAFRSIEEIDNLIVEIRTADGLLGLGAASPERHVTGETLEACHAALDHDRLGWLMGRDIR 80 (356)
T ss_dssp CBEEEEEEEEEEEEBC----------CEEEEEEEEEEETTSCEEEEEECCCHHHHCCCHHHHHHHHCGGGCTTTTTCBGG
T ss_pred CEEEEEEEEEEEecccCCEEecCeEEEeeeEEEEEEEECCCCEEEecccCCCCcCcCCHHHHHHHHHHHhHHHhcCCCcc
Confidence 8999999999999999999999999999999999999999999999999877666654433 233444 78999999999
Q ss_pred CHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecCCCHHHHHHHHHHHhhcCCcE
Q 014285 143 TLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFST 222 (427)
Q Consensus 143 ~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~ 222 (427)
+++.+|+.|++.+.+. +++++|||+||||++||..|+|||+||||.++++|+|++++..+++++.+++++++++||++
T Consensus 81 ~~~~~~~~l~~~~~~~--~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~v~~~~~~~~~~~~~~~~~a~~~~~~G~~~ 158 (356)
T 3ro6_B 81 TLPRLCRELAERLPAA--PAARAALDMALHDLVAQCLGLPLVEILGRAHDSLPTSVTIGIKPVEETLAEAREHLALGFRV 158 (356)
T ss_dssp GHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHHHTSBHHHHTCCCCSCEEBCEEECSCCHHHHHHHHHHHHHTTCCE
T ss_pred CHHHHHHHHHHhhccc--hhHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceeeeEEEcCCCHHHHHHHHHHHHHcCCCE
Confidence 9999999998876554 67899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCchhhHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhcc
Q 014285 223 LKLNVGRNITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARD 301 (427)
Q Consensus 223 iKlKiG~~~~~d~~~l~~ir~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~ 301 (427)
||+|+|.++++|++++++||+. ++++.|+||+|++|++++|++++++|+++++ .|||||++++|++++++|++
T Consensus 159 ~K~K~G~~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~~---- 232 (356)
T 3ro6_B 159 LKVKLCGDEEQDFERLRRLHETLAGRAVVRVDPNQSYDRDGLLRLDRLVQELGI--EFIEQPFPAGRTDWLRALPK---- 232 (356)
T ss_dssp EEEECCSCHHHHHHHHHHHHHHHTTSSEEEEECTTCCCHHHHHHHHHHHHHTTC--CCEECCSCTTCHHHHHTSCH----
T ss_pred EEEEeCCCHHHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHhcCC--CEEECCCCCCcHHHHHHHHh----
Confidence 9999999999999999999995 7999999999999999999999999999997 49999999999999999975
Q ss_pred ccCCeEEecCCCCCHHHHHHHHHcC-CCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhc
Q 014285 302 TYGISVVADESCRSLNDVQKVMQEN-LASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGL 379 (427)
Q Consensus 302 ~~~iPIa~dE~~~~~~~~~~ll~~~-a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal 379 (427)
++++||++||++.+..+++++++.+ ++|++|+|++++| ++++++++++|+++|+++++||++||+|+++|++|+++++
T Consensus 233 ~~~iPIa~dE~~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~es~i~~aa~~hlaaa~ 312 (356)
T 3ro6_B 233 AIRRRIAADESLLGPADAFALAAPPAACGIFNIKLMKCGGLAPARRIATIAETAGIDLMWGCMDESRISIAAALHAALAC 312 (356)
T ss_dssp HHHHTEEESTTCCSHHHHHHHHSSSCSCSEEEECHHHHCSHHHHHHHHHHHHHHTCEEEECCCSCCHHHHHHHHHHHHTC
T ss_pred cCCCCEEeCCcCCCHHHHHHHHhcCCcCCEEEEcccccCCHHHHHHHHHHHHHcCCEEEecCCcccHHHHHHHHHHHhcC
Confidence 6889999999999999999999999 9999999999997 9999999999999999999999999999999999999999
Q ss_pred CCcceeccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCC
Q 014285 380 GCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWT 424 (427)
Q Consensus 380 ~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~ 424 (427)
+|..+.|+++++.+.+|++.+++.++||++.+|++||||| +|+|
T Consensus 313 p~~~~~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv-~d~~ 356 (356)
T 3ro6_B 313 PATRYLDLDGSFDLARDVAEGGFILEDGRLRVTERPGLGL-VYPD 356 (356)
T ss_dssp TTEEEECCCTTTTBSCCSCEESCEEETTEEECCSSSBTCE-EC--
T ss_pred CCCCeEecccchhhhhccccCCceeECCEEECCCCCeeee-cCCC
Confidence 9999999999988888999888999999999999999999 9986
|
| >3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-73 Score=578.38 Aligned_cols=354 Identities=23% Similarity=0.337 Sum_probs=325.5
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCC--CCCcchHHHH-HHHHH-HhhHhcCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVP--LVTGDQTKAL-VKVRE-ACQFLRQSP 140 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~--~~s~~~~~~~-~~~~~-~~~~l~g~~ 140 (427)
++|++|+++.+++|++.||.++.++.+.++.++|+|+|++|++||||+.+.+ .|++++.+.. ..+++ +.|.|+|++
T Consensus 6 ~~I~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~y~~e~~~~~~~~i~~~l~p~liG~d 85 (382)
T 3dgb_A 6 SAIESIETIIVDLPTIRPHKLAMHTMQNQTLVLIRLRCADGIEGLGESTTIGGLAYGNESPDSIKTNIDRFVAPLLIGQD 85 (382)
T ss_dssp TBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEEECSTTTTSSSCCHHHHHHHHHHTHHHHHTTSB
T ss_pred CeeeEEEEEEEeeccCCCeEecCeEEeeeeEEEEEEEECCCCEEEEecccCCCCccCCCCHHHHHHHHHHHHHHHhcCCC
Confidence 3499999999999999999999999999999999999999999999999874 4565544433 33444 889999999
Q ss_pred CCCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhh-c
Q 014285 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCK-L 218 (427)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~-~ 218 (427)
+.+++.+|+.|++.+.|+ +++++||||||||++||..|+|||+||||. +++||+|++++..+++++.++++++++ +
T Consensus 86 ~~~~~~~~~~l~~~~~g~--~~A~said~ALwDl~gk~~g~Pv~~LLGg~~r~~v~~~~t~~~~~~~~~~~~~~~~~~~~ 163 (382)
T 3dgb_A 86 ASNINAAMLRLEQSIRGN--TFAKSGIESALLDAQGKRLGLPVSELLGGRVRDALPVAWTLASGDTAKDIAEAQKMLDLR 163 (382)
T ss_dssp TTCHHHHHHHHHHHCCSC--HHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSEEEBCEEECSSCHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCCeeeEEEEecCCChHHHHHHHHHHHHhC
Confidence 999999999999877664 678999999999999999999999999997 789999999888899988888888777 6
Q ss_pred CCcEEEEeccC-CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHH
Q 014285 219 GFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVS 296 (427)
Q Consensus 219 Gf~~iKlKiG~-~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~ 296 (427)
||++||+|+|. ++++|++++++||+ .++++.|+||||++|++++|++++++|+++++ .|||||++++|++++++|+
T Consensus 164 G~~~~KiKvg~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~ 241 (382)
T 3dgb_A 164 RHRIFKLKIGAGEVDRDLAHVIAIKKALGDSASVRVDVNQAWDEAVALRACRILGGNGI--DLIEQPISRNNRAGMVRLN 241 (382)
T ss_dssp SCSEEEEECCSSCHHHHHHHHHHHHHHHGGGSEEEEECTTCBCHHHHHHHHHHHHTTTC--CCEECCBCTTCHHHHHHHH
T ss_pred CCCEEEEeeCCCCHHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHHHhhcCc--CeeeCCCCccCHHHHHHHH
Confidence 99999999997 57999999999999 57899999999999999999999999999997 4999999999999999998
Q ss_pred HhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHH
Q 014285 297 NFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHL 375 (427)
Q Consensus 297 ~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hl 375 (427)
+ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+++||+|++++++|+
T Consensus 242 ~----~~~ipIa~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~~es~ig~aa~~hl 317 (382)
T 3dgb_A 242 A----SSPAPIMADESIECVEDAFNLAREGAASVFALKIAKNGGPRATLRTAAIAEAAGIGLYGGTMLEGGIGTLASAHA 317 (382)
T ss_dssp H----HCSSCEEESTTCSSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEEECCSCCCHHHHHHHHHH
T ss_pred H----hCCCCEEeCCCcCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCeEeecCCCccHHHHHHHHHH
Confidence 6 68999999999999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred HhhcCCcce-eccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 376 AAGLGCIKY-VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 376 aaal~~~~~-~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+++++|..+ .|+++|+.+.++++.+++.++||++.+|++||||+|+|+++|
T Consensus 318 aaa~~~~~~~~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l 369 (382)
T 3dgb_A 318 FLTLNKLSWDTELFGPLLLTEDILAEPPVYRDFHLHVSKAPGLGLSLDEERL 369 (382)
T ss_dssp HTTSSCCTTCBCCCHHHHBSCCSBSSCCEEETTEEECCCCSBTSCCBCHHHH
T ss_pred HHcCCCCcceeeccchhhhhhcccCCCceeECCEEECCCCCCcCcccCHHHH
Confidence 999999887 688888777889999999999999999999999999999875
|
| >3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-73 Score=577.94 Aligned_cols=354 Identities=22% Similarity=0.322 Sum_probs=312.3
Q ss_pred eeeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCC--CCCcchHHHH-HHHHH-HhhHhcCC
Q 014285 64 WVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVP--LVTGDQTKAL-VKVRE-ACQFLRQS 139 (427)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~--~~s~~~~~~~-~~~~~-~~~~l~g~ 139 (427)
.|||++|+++.+++|++.||.++.++.+.++.++|+|+|++|++|||||.+.+ .|++++.+.. ..+++ +.|.|+|+
T Consensus 4 ~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~i~td~G~~G~GE~~~~~~~~y~~e~~~~~~~~i~~~l~p~l~G~ 83 (381)
T 3fcp_A 4 TATVEQIESWIVDVPTIRPHKLSMTTMGCQSLVIVRLTRSDGICGIGEATTIGGLSYGVESPEAISSAITHYLTPLLKGQ 83 (381)
T ss_dssp CCBEEEEEEEEEEECBC-----------CEEEEEEEEEETTSCEEEEEEECSTTTTSSSCCHHHHHHHHHHTHHHHHTTS
T ss_pred CcEEEEEEEEEEeccccCCeEecccEEEeeeEEEEEEEECCCCEEEeccccCCCCccCCCCHHHHHHHHHHHHHHHhcCC
Confidence 39999999999999999999999999999999999999999999999999874 4565544433 33444 88999999
Q ss_pred CCCCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhh-
Q 014285 140 PPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCK- 217 (427)
Q Consensus 140 ~~~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~- 217 (427)
++.+++.+|+.|++.+.|+ +++++||||||||++||..|+|||+||||. +++||+|++++..+++++.++++++++
T Consensus 84 d~~~~~~~~~~l~~~~~g~--~~A~said~ALwDl~gk~~g~Pv~~LLGg~~r~~v~~~~t~~~~~~~~~~~~~~~~~~~ 161 (381)
T 3fcp_A 84 PADNLNALTARMNGAIKGN--TFAKSAIETALLDAQGKALGLPVSALLGGALQTALPVLWTLASGDTAKDIAEGEKLLAE 161 (381)
T ss_dssp BSSCHHHHHHHHHHHCCSC--HHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSEEEBCEEECSSCHHHHHHHHHHHTC-
T ss_pred CcCCHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCceeeEEEecCCChHHHHHHHHHHHHh
Confidence 9999999999998877664 678999999999999999999999999997 789999999888899998888888777
Q ss_pred cCCcEEEEeccC-CchhhHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHH
Q 014285 218 LGFSTLKLNVGR-NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDV 295 (427)
Q Consensus 218 ~Gf~~iKlKiG~-~~~~d~~~l~~ir~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L 295 (427)
.||++||+|+|. ++++|++++++||+. ++++.|+||||++|++++|++++++|+++++ .|||||++++|++++++|
T Consensus 162 ~G~~~~KiKvg~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l 239 (381)
T 3fcp_A 162 GRHRAFKLKIGARELATDLRHTRAIVEALGDRASIRVDVNQAWDAATGAKGCRELAAMGV--DLIEQPVSAHDNAALVRL 239 (381)
T ss_dssp ---CEEEEECCSSCHHHHHHHHHHHHHHTCTTCEEEEECTTCBCHHHHHHHHHHHHHTTC--SEEECCBCTTCHHHHHHH
T ss_pred CCCCEEEEecCCCChHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHhhcCc--cceeCCCCcccHHHHHHH
Confidence 699999999997 579999999999995 7899999999999999999999999999997 499999999999999999
Q ss_pred HHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHH
Q 014285 296 SNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALH 374 (427)
Q Consensus 296 ~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~h 374 (427)
++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++||++||+|++++++|
T Consensus 240 ~~----~~~ipIa~dE~~~~~~~~~~~~~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i~~aa~~h 315 (381)
T 3fcp_A 240 SQ----QIETAILADEAVATAYDGYQLAQQGFTGAYALKIAKAGGPNSVLALARVAQAAGIGLYGGTMLEGTVGTVASLH 315 (381)
T ss_dssp HH----HSSSEEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTSTTHHHHHHHHHHHHTCEEEECCSCCCHHHHHHHHH
T ss_pred HH----hCCCCEEECCCcCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCceecCCCCccHHHHHHHHH
Confidence 86 68999999999999999999999999999999999997 99999999999999999999999999999999999
Q ss_pred HHhhcCCcce-eccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 375 LAAGLGCIKY-VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 375 laaal~~~~~-~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
++++++ ..+ .|+++|+.+.++++.+++.++||++.+|++||||+|+|+++|
T Consensus 316 laaa~~-~~~~~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l 367 (381)
T 3fcp_A 316 AWSTLP-LQWGTEMFGPLLLKDDIVSVPLTFADGQVALPQTPGLGVELDEDKL 367 (381)
T ss_dssp HHTTSC-CTTCBCCCGGGGBSCCSBSSCCCEETTEEECCCSSBTSCCBCHHHH
T ss_pred HHHhCC-CccccccccchhhhhhccCCCceeeCCEEECCCCCCcCcccCHHHH
Confidence 999999 766 588888778889999999999999999999999999999875
|
| >3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-74 Score=578.76 Aligned_cols=356 Identities=20% Similarity=0.303 Sum_probs=316.3
Q ss_pred cceeeEEEEEEEEEEeeccccccccceeEEeee-EEEEEEEEcCCceEEEEeecCCCCCcchHH-HHHHHHH-HhhHhcC
Q 014285 62 TFWVDVQRAEGRELNVALSAPLSLGLSSVENVE-NVAIRVELSNGCVGWGEVAVVPLVTGDQTK-ALVKVRE-ACQFLRQ 138 (427)
Q Consensus 62 ~~~~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~-~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~-~~~~~~~-~~~~l~g 138 (427)
++.|||++|+++.+++|++.||.++.++.+.++ .++|+|+|++|++|||||.+.+.++ ++.+ ....+++ +.|.|+|
T Consensus 3 ~~~~kI~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~-e~~~~~~~~i~~~l~p~liG 81 (377)
T 3my9_A 3 SWDSVVERIRIFLVESPIKMARLQGVGNVKGSVKRVLLEVTSADGIVGWGEAAPWEVFT-GTPEAAFSALDIYLRPLILG 81 (377)
T ss_dssp CCCCBEEEEEEEEEEECEEC----------CCEEEEEEEEEETTSCEEEEEECCC------CHHHHHHHHHTTTHHHHTT
T ss_pred cccCEEEEEEEEEEeccccCCeeccceEEEeeeeEEEEEEEECCCCEEEEecccCCCcC-CCHHHHHHHHHHHHHHHhCC
Confidence 466999999999999999999999999999888 9999999999999999999887654 3333 3334555 7899999
Q ss_pred CCCCCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhh
Q 014285 139 SPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCK 217 (427)
Q Consensus 139 ~~~~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~ 217 (427)
+++.+++.+|+.|++.+.++ +++++||||||||++||..|+|||+||||. ++++|+|++++..+++++.++++++++
T Consensus 82 ~d~~~~~~~~~~l~~~~~~~--~~A~said~AlwDl~gk~~g~Pl~~LLGg~~r~~v~~~~t~~~~~~~~~~~~a~~~~~ 159 (377)
T 3my9_A 82 APIKRVRELMARMDKMLVGH--GEAKAAVEMALLDILGKATGLSVADLLGGRVRDRIPLSFSIADPDFDADLERMRAMVP 159 (377)
T ss_dssp CBTTCHHHHHHHHHHHSCSC--HHHHHHHHHHHHHHHHHHHTCBTTGGGTCCSCSEEEBCEEECCSSHHHHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHhcCc--hhHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 99999999999998877654 578999999999999999999999999996 789999999988899999999999999
Q ss_pred cCCcEEEEeccC-CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHH
Q 014285 218 LGFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDV 295 (427)
Q Consensus 218 ~Gf~~iKlKiG~-~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L 295 (427)
+||++||+|+|. ++++|++++++||+ .++++.|+||+|++|++++|++++++|+++++ .|||||++++|++++++|
T Consensus 160 ~G~~~~K~Kvg~~~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l 237 (377)
T 3my9_A 160 AGHTVFKMKTGVKPHAEELRILETMRGEFGERIDLRLDFNQALTPFGAMKILRDVDAFRP--TFIEQPVPRRHLDAMAGF 237 (377)
T ss_dssp TTCCEEEEECSSSCHHHHHHHHHHHHHHHGGGSEEEEECTTCCCTTTHHHHHHHHHTTCC--SCEECCSCTTCHHHHHHH
T ss_pred cCCCEEEEccCCCcHHHHHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCC--CEEECCCCccCHHHHHHH
Confidence 999999999997 67999999999999 57999999999999999999999999999997 499999999999999999
Q ss_pred HHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHH
Q 014285 296 SNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALH 374 (427)
Q Consensus 296 ~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~h 374 (427)
++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+++||+||+++++|
T Consensus 238 ~~----~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~es~i~~aa~~h 313 (377)
T 3my9_A 238 AA----ALDTPILADESCFDAVDLMEVVRRQAADAISVKIMKCGGLMKAQSLMAIADTAGLPGYGGTLWEGGIALAAGTQ 313 (377)
T ss_dssp HH----HCSSCEEESTTCSSHHHHHHHHHHTCCSEEECCHHHHTSHHHHHHHHHHHHHHTCCEECCEECCSHHHHHHHHH
T ss_pred HH----hCCCCEEECCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCeEecCCCCCcHHHHHHHHH
Confidence 86 68999999999999999999999999999999999997 99999999999999999999999999999999999
Q ss_pred HHhhcCCcce-eccCCC-cccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 375 LAAGLGCIKY-VNLNTP-FLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 375 laaal~~~~~-~e~~~p-~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
++++++|..+ .|++.+ ..+.++++.+++.++||++.+|++||||+|+|+++|
T Consensus 314 laaa~~~~~~~~e~~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l 367 (377)
T 3my9_A 314 LIAATPGISLGCEFYMPHHVLTEDVLEERIANSAGHVIVPDGPGLGISISEASL 367 (377)
T ss_dssp HHHTCTTBCSCBEESCTTSEECCCSSSSCCCEETTEEECCCSSBTSCCCCHHHH
T ss_pred HHHhCCCCccceeecCchhhhhhhccCCCceeECCEEECCCCCCCCcccCHHHH
Confidence 9999999887 688877 567788988899999999999999999999999865
|
| >3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-73 Score=577.19 Aligned_cols=353 Identities=20% Similarity=0.275 Sum_probs=314.4
Q ss_pred eeEEEEEEEEEEeeccccccccceeE-EeeeEEEEEEEEcCCceEEEEeecCCCCCcchHH-HHHHHHH-HhhHhcCCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSV-ENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTK-ALVKVRE-ACQFLRQSPP 141 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~-~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~-~~~~~~~-~~~~l~g~~~ 141 (427)
|||++|+++.+++|++.||.++.+++ +.++.++|+|+|++|++|||||.+.+.++ ++.+ ....+++ +.|.|+|+++
T Consensus 8 mkI~~i~~~~~~~Pl~~p~~~s~g~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~-e~~~~~~~~i~~~l~p~l~G~d~ 86 (385)
T 3i6e_A 8 QKIIAMDLWHLALPVVSARDHGIGRVEGSCEIVVLRLVAEGGAEGFGEASPWAVFT-GTPEASYAALDRYLRPLVIGRRV 86 (385)
T ss_dssp SBEEEEEEEEEECCC--------------CEEEEEEEEETTSCEEEEEECCCTTTT-CCHHHHHHHHHHTTHHHHTTCBG
T ss_pred cEEEEEEEEEEecccCCCeeccCcEEeceeeEEEEEEEECCCCEEEEeeccCCCcC-CCHHHHHHHHHHHHHHHHCCCCc
Confidence 89999999999999999999999999 88899999999999999999999887665 3333 3334566 8899999999
Q ss_pred CCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhhcCC
Q 014285 142 TTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGF 220 (427)
Q Consensus 142 ~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf 220 (427)
.+++.+|+.|++.+.+. +++++|||+||||++||..|+|||+||||. ++++|+|++++..+++++.+++++++++||
T Consensus 87 ~~~~~~~~~l~~~~~~~--~~A~said~ALwDl~gk~~g~Pl~~LLGg~~r~~v~~~~t~~~~~~~~~~~~a~~~~~~G~ 164 (385)
T 3i6e_A 87 GDRVAIMDEAARAVAHC--TEAKAALDSALLDLAGRISNLPVWALLGGKCRDTIPLSCSIANPDFDADIALMERLRADGV 164 (385)
T ss_dssp GGHHHHHHHHHHHSSSC--HHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSEEEBEEEECCSSHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHcCCcHHHHhCcccCCceEEEEEcCCCCHHHHHHHHHHHHHcCC
Confidence 99999999998876654 678999999999999999999999999997 789999999988899999999999999999
Q ss_pred cEEEEeccC-CchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhh
Q 014285 221 STLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFA 299 (427)
Q Consensus 221 ~~iKlKiG~-~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~ 299 (427)
++||+|+|. ++++|++++++||+..|++.|+||+|++|++++|++++++|+++++ .|||||++++|++++++|++
T Consensus 165 ~~~K~Kvg~~~~~~d~~~v~avR~a~~~~~l~vDan~~~~~~~A~~~~~~L~~~~i--~~iEqP~~~~d~~~~~~l~~-- 240 (385)
T 3i6e_A 165 GLIKLKTGFRDHAFDIMRLELIARDFPEFRVRVDYNQGLEIDEAVPRVLDVAQFQP--DFIEQPVRAHHFELMARLRG-- 240 (385)
T ss_dssp CEEEEECSSSCHHHHHHHHHHHHHHCTTSEEEEECTTCCCGGGHHHHHHHHHTTCC--SCEECCSCTTCHHHHHHHHT--
T ss_pred CEEEEecCCCCHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCC--CEEECCCCcccHHHHHHHHH--
Confidence 999999997 6899999999999955999999999999999999999999999997 49999999999999999985
Q ss_pred ccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhh
Q 014285 300 RDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAG 378 (427)
Q Consensus 300 r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaa 378 (427)
++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+++||+||+++++|++++
T Consensus 241 --~~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~~es~i~~aa~~hlaaa 318 (385)
T 3i6e_A 241 --LTDVPLLADESVYGPEDMVRAAHEGICDGVSIKIMKSGGLTRAQTVARIAAAHGLMAYGGDMFEAGLAHLAGTHMIAA 318 (385)
T ss_dssp --TCSSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCSCCHHHHHHHHHHHHT
T ss_pred --hCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCEEEeCCCCccHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred cCCcce-eccCCC-cccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 379 LGCIKY-VNLNTP-FLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 379 l~~~~~-~e~~~p-~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
++|..+ .|++.+ ..+.++++.+++.++||++.+|++||||+|+|+++|
T Consensus 319 ~~~~~~~~e~~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l 368 (385)
T 3i6e_A 319 TPEITLGCEFYQASYFLNEDILETPFRVEAGQVIVPDGPGLGARADPEKL 368 (385)
T ss_dssp CTTEEEEECCCHHHHTCSSCSBSSCCCEETTEEECCCSSBTSSCBCHHHH
T ss_pred CCCCccchhhcCchhhhhhhcccCCceeECCEEECCCCCCCCceECHHHH
Confidence 999887 688776 566788888899999999999999999999999865
|
| >3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-73 Score=570.92 Aligned_cols=353 Identities=19% Similarity=0.314 Sum_probs=314.8
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHH-HHHHHH-HHhhHhcCCCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTK-ALVKVR-EACQFLRQSPPT 142 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~-~~~~~~-~~~~~l~g~~~~ 142 (427)
|||++|+++++++|++.||.++.++++.++.++|+|+|++|++|||||.+.|.+++++.+ ....++ .+.|.|+|+++.
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~e~~~~~~~~i~~~l~~~l~G~d~~ 80 (367)
T 3dg3_A 1 MKIVAIGAIPFSIPYTKPLRFASGEVHAAEHVLVRVHTDDGIVGVAEAPPRPFTYGETQTGIVAVIEQYFAPALIGLTLT 80 (367)
T ss_dssp CBEEEEEEEEEEECBC-----------CEEEEEEEEEETTSCEEEEEECCCTTTTCCCHHHHHHHHHHTHHHHHTTCBTT
T ss_pred CEEEEEEEEEEEeeccCCeeccCeEEeeeeEEEEEEEECCCCEEEEeccCCCCccCCCHHHHHHHHHHHHHHHHcCCCcC
Confidence 899999999999999999999999999999999999999999999999988877665433 334455 488999999999
Q ss_pred CHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecCCCHHHHHHHHHHHhhc-CCc
Q 014285 143 TLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKL-GFS 221 (427)
Q Consensus 143 ~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~-Gf~ 221 (427)
+++.+|+.|++. .++ +++++||||||||++||..|+|||+||||.++++|+|++++..+++++.+++++++++ ||+
T Consensus 81 ~~~~~~~~l~~~-~~~--~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~G~~ 157 (367)
T 3dg3_A 81 EREVAHTRMART-VGN--PTAKAAIDMAMWDALGQSLRLSVSEMLGGYTDRMRVSHMLGFDDPVKMVAEAERIRETYGIN 157 (367)
T ss_dssp CHHHHHHHHTTS-CSC--HHHHHHHHHHHHHHHHHHHTCBHHHHHTCCCSEEEEEEEEESSCHHHHHHHHHHHHHHHCCC
T ss_pred CHHHHHHHHHhc-cCc--hHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCeEEEEEEecCCCHHHHHHHHHHHHHhcCcc
Confidence 999999999764 333 6789999999999999999999999999988999999999999999999999999999 999
Q ss_pred EEEEeccCCch-hhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhh
Q 014285 222 TLKLNVGRNIT-ADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFA 299 (427)
Q Consensus 222 ~iKlKiG~~~~-~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~ 299 (427)
+||+|+|.+.. +|++++++||+ .+|++.|+||+|++|++++|+++++.|+++++ .|||||++++|++++++|++
T Consensus 158 ~~K~K~g~~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~~-- 233 (367)
T 3dg3_A 158 TFKVKVGRRPVQLDTAVVRALRERFGDAIELYVDGNRGWSAAESLRAMREMADLDL--LFAEELCPADDVLSRRRLVG-- 233 (367)
T ss_dssp EEEEECCCSSTHHHHHHHHHHHHHHGGGSEEEEECTTCSCHHHHHHHHHHTTTSCC--SCEESCSCTTSHHHHHHHHH--
T ss_pred EEEEeeCCChhhhHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHhCC--CEEECCCCcccHHHHHHHHH--
Confidence 99999998777 99999999999 57999999999999999999999999999997 49999999999999999986
Q ss_pred ccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCccHHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhc
Q 014285 300 RDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGL 379 (427)
Q Consensus 300 r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal 379 (427)
++++||++||++.+..+++++++.+++|++|+|++++|++++++++++|+++|+++++|+++||+||+++++|+++++
T Consensus 234 --~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~Git~~~~ia~~A~~~gi~~~~~~~~es~i~~aa~~hlaaa~ 311 (367)
T 3dg3_A 234 --QLDMPFIADESVPTPADVTREVLGGSATAISIKTARTGFTGSTRVHHLAEGLGLDMVMGNQIDGQIGTACTVSFGTAF 311 (367)
T ss_dssp --HCSSCEEECTTCSSHHHHHHHHHHTSCSEEEECHHHHTTHHHHHHHHHHHHHTCEEEECCSSCCHHHHHHHHHHHTTC
T ss_pred --hCCCCEEecCCcCCHHHHHHHHHcCCCCEEEeehhhhhHHHHHHHHHHHHHcCCeEEECCcCCcHHHHHHHHHHHHhC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-cce-eccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 380 GC-IKY-VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 380 ~~-~~~-~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+| ..+ .+++.++.+.++++.+++.++||++.+|++||||+|+|+++|
T Consensus 312 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l 360 (367)
T 3dg3_A 312 ERTSRHAGELSNFLDMSDDLLTVPLQISDGQLHRRPGPGLGIEIDPDKL 360 (367)
T ss_dssp HHHHTSCEECCGGGGBSCCSBSSCCCCBTTEEECCSSSBTSCCBCHHHH
T ss_pred CcccCcchhccchhhhhhcccCCCceeeCCEEECCCCCcCCceECHHHH
Confidence 74 233 478888788889999999999999999999999999999865
|
| >3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural genomics, mandelate racemase/muconatelactonizing hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism} PDB: 2pce_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-72 Score=567.08 Aligned_cols=351 Identities=17% Similarity=0.274 Sum_probs=321.5
Q ss_pred eeEEEEEEEEEEeecccc-ccccce-eEEeeeEEEEEEEEcCCceEEEEeecC-CCCCcchH-HHHHHHHHHhhHhcCCC
Q 014285 65 VDVQRAEGRELNVALSAP-LSLGLS-SVENVENVAIRVELSNGCVGWGEVAVV-PLVTGDQT-KALVKVREACQFLRQSP 140 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p-~~~a~~-~~~~~~~vlV~v~t~~G~~G~GE~~~~-~~~s~~~~-~~~~~~~~~~~~l~g~~ 140 (427)
|||++|+++.+++|++.| |.++.+ +.+.++.++|+|+|++|++|||||.+. +.|+++.. .....++.+.|.|+|++
T Consensus 3 MkI~~i~~~~~~~pl~~p~~~~s~g~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~e~~~~~~~~l~~l~~~l~G~d 82 (386)
T 3fv9_G 3 LKITRIDIHRTDLPVRGGVYRLSGGREYHSYDATIVSIETDTGLTGWGESTPFGSTYIAAHAGGTRAALELLAPAILGMD 82 (386)
T ss_dssp CCEEEEEEEEEEEEBSSSCEEETTTEEESEEEEEEEEEEETTSCEEEEEECCSTTSSSSCCHHHHHHHHHHHHHHHTTSC
T ss_pred CEEEEEEEEEEEeecCCCceEecCceEEeeeeEEEEEEEECCCCEEEEecccCCCccCcccHHHHHHHHHHHHHHhCCCC
Confidence 899999999999999999 999954 888999999999999999999999987 56665433 33344567999999999
Q ss_pred CCCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhhcC
Q 014285 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLG 219 (427)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~G 219 (427)
+.+++.+|+.|++.+.|. +++++|||+|||||+||..|+|||+||||. ++++|+|++++..+++++.+++++++++|
T Consensus 83 ~~~~~~~~~~l~~~~~g~--~~A~said~ALwDl~gk~~g~Pv~~LLGg~~~~~v~~y~s~~~~~~e~~~~~a~~~~~~G 160 (386)
T 3fv9_G 83 PRQHDRIWDRMRDTLKGH--RDARAALDIACWDIAAQAAGLPLCDMTGGRVAGPVPVISSIGGDTPEAMRAKVARHRAQG 160 (386)
T ss_dssp TTCHHHHHHHHHHHCSSC--HHHHHHHHHHHHHHHHHHHTCBHHHHTTCCCSSCBCEEEEECSCCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCCceeeeEecCCCCHHHHHHHHHHHHHCC
Confidence 999999999998877664 679999999999999999999999999997 68999999999999999999999999999
Q ss_pred CcEEEEecc-----CCchhhHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHh-hhCCCCCceEeCCCCCCChhhH
Q 014285 220 FSTLKLNVG-----RNITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKL-NDMGVIPVLFEQPVHRDDWSGL 292 (427)
Q Consensus 220 f~~iKlKiG-----~~~~~d~~~l~~ir~~-~~~~~L~vDAN~~~s~~~A~~~l~~L-~~~~l~~~~iEqP~~~~d~~~~ 292 (427)
|++||+|+| .++++|++++++||+. ++++.|+||||++|++++|++++++| ++++ + |||||++ |++++
T Consensus 161 ~~~~K~Kvg~~~~~~~~~~d~~~v~avR~a~G~~~~L~vDaN~~~~~~~A~~~~~~l~~~~~--i-~iEeP~~--~~~~~ 235 (386)
T 3fv9_G 161 FKGHSIKIGASEAEGGPALDAERITACLADRQPGEWYLADANNGLTVEHALRMLSLLPPGLD--I-VLEAPCA--SWAET 235 (386)
T ss_dssp CCEEEEECCCCTTTTHHHHHHHHHHHHTTTCCTTCEEEEECTTCCCHHHHHHHHHHSCSSCC--C-EEECCCS--SHHHH
T ss_pred CCEEEEeccCCCCCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHhhccCC--c-EEecCCC--CHHHH
Confidence 999999999 5689999999999995 79999999999999999999999999 7776 4 9999998 89999
Q ss_pred HHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHH
Q 014285 293 HDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGF 371 (427)
Q Consensus 293 ~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a 371 (427)
++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+++||+|++++
T Consensus 236 ~~l~~----~~~iPIa~dE~~~~~~~~~~~~~~~a~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~~es~i~~aa 311 (386)
T 3fv9_G 236 KSLRA----RCALPLLLDELIQTETDLIAAIRDDLCDGVGLKVSKQGGITPMLRQRAIAAAAGMVMSVQDTVGSQISFAA 311 (386)
T ss_dssp HHHHT----TCCSCEEESTTCCSHHHHHHHHHTTCCSEEEEEHHHHTSHHHHHHHHHHHHHTTCEEEEECSSCCHHHHHH
T ss_pred HHHHh----hCCCCEEeCCCcCCHHHHHHHHHhCCCCEEEECccccCCHHHHHHHHHHHHHcCCEEEeCCCCCCHHHHHH
Confidence 99985 78999999999999999999999999999999999997 99999999999999999999999999999999
Q ss_pred HHHHHhhcCCccee-ccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 372 ALHLAAGLGCIKYV-NLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 372 ~~hlaaal~~~~~~-e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
++|++++++|..+. +++++.++.++++.+++.++||++.+|++|||||++|+++|
T Consensus 312 ~~hlaaa~~~~~~~~~~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l 367 (386)
T 3fv9_G 312 ILHLAQSTPRHLLRCALDTRAMTTAELAEIDAPLRDGGASAPSDPGLGLRVNRDAL 367 (386)
T ss_dssp HHHHHHTSCTTTEEEEECGGGTBCCCCEECCCCSBTTBBCCCCSSBTCCEECGGGG
T ss_pred HHHHHHhCCCcccccccccccchhccccCCCceEECCEEECCCCCCCCceeCHHHH
Confidence 99999999996443 67777667778888888999999999999999999999987
|
| >3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-72 Score=563.36 Aligned_cols=344 Identities=29% Similarity=0.443 Sum_probs=322.5
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHH-HHHHHHHHh---hHhcCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTK-ALVKVREAC---QFLRQSP 140 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~-~~~~~~~~~---~~l~g~~ 140 (427)
|||++++++.+++|++.||.++.++.+.++.++|+|+|++|++|||||.+.+.+++++.+ ....++.+. |.|+|++
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~ge~~~~~~~~i~~l~~~~p~l~G~d 80 (354)
T 3jva_A 1 MKIKQVHVRASKIKLKETFTIALGTIESADSAIVEIETEEGLVGYGEGGPGIFITGETLAGTLETIELFGQAIIGLNPFN 80 (354)
T ss_dssp CCEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECCCTTTTCCCHHHHHHHHHHHHTTSTTCCTTC
T ss_pred CEEEEEEEEEEEEeccCCEEecCcEEeeceEEEEEEEECCCCEEEEeecCCCCcCCCCHHHHHHHHHHHhhcCccccCCC
Confidence 899999999999999999999999999999999999999999999999988877665433 333445677 9999999
Q ss_pred CCCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecCCCHHHHHHHHHHHhhcCC
Q 014285 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGF 220 (427)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf 220 (427)
+.+++.+|+.|+ .+ .+++++||||||||++||..|+|||+||||.++++|+|+++++.+++++.+++++++++||
T Consensus 81 ~~~~~~~~~~l~---~~--~~~A~~aid~AlwDl~gk~~g~Pl~~llGg~~~~v~~~~~~~~~~~~~~~~~a~~~~~~G~ 155 (354)
T 3jva_A 81 IEKIHEVMDKIS---AF--APAAKAAIDIACYDLMGQKAQLPLYQLLGGYDNQVITDITLGIDEPNVMAQKAVEKVKLGF 155 (354)
T ss_dssp HHHHHHHHHHHC---SS--CHHHHHHHHHHHHHHHHHHHTSBHHHHTTCSCSEEECCEEECSCCHHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHh---cc--cHHHHHHHHHHHHHHHHHHcCCcHHHHhhccCCeeeeeEEeCCCCHHHHHHHHHHHHHhCC
Confidence 999999999886 23 3679999999999999999999999999998899999999999999999999999999999
Q ss_pred cEEEEeccCCchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhh
Q 014285 221 STLKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFA 299 (427)
Q Consensus 221 ~~iKlKiG~~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~ 299 (427)
++||+|+|.+.++|++++++||+ .++++.|+||+|++|++++|++++++|+++++ .|||||++++|++++++|++
T Consensus 156 ~~~K~K~g~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~L~~~~i--~~iEqP~~~~d~~~~~~l~~-- 231 (354)
T 3jva_A 156 DTLKIKVGTGIEADIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADYQI--ELVEQPVKRRDLEGLKYVTS-- 231 (354)
T ss_dssp SEEEEECCSCHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHTTTSCE--EEEECCSCTTCHHHHHHHHH--
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCC--CEEECCCChhhHHHHHHHHH--
Confidence 99999999988999999999999 58999999999999999999999999999987 59999999999999999986
Q ss_pred ccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccC-chhHHHHHHHHHHh
Q 014285 300 RDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAA 377 (427)
Q Consensus 300 r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hlaa 377 (427)
++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+++ ||+++++|++|+++
T Consensus 232 --~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~~~es~i~~~a~~hlaa 309 (354)
T 3jva_A 232 --QVNTTIMADESCFDAQDALELVKKGTVDVINIKLMKCGGIHEALKINQICETAGIECMIGCMAEETTIGITAAAHLAA 309 (354)
T ss_dssp --HCSSEEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCTTCCHHHHHHHHHHHH
T ss_pred --hCCCCEEEcCCcCCHHHHHHHHHcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCeEEecCCCcccHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999997 999999999999999999999999 99999999999999
Q ss_pred hcCCcceeccCCCcccccCCCCCceeeeCcEEecCCC-CCccc
Q 014285 378 GLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNA-RGQGG 419 (427)
Q Consensus 378 al~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~-pGlGv 419 (427)
+++|+.++|+++|+.+.+|++.+++.++||++.+|++ |||||
T Consensus 310 a~~~~~~~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~~PGlGv 352 (354)
T 3jva_A 310 AQKNITRADLDATFGLETAPVTGGVSLEAKPLLELGEAAGLGI 352 (354)
T ss_dssp HCTTEEEECCCGGGGBSSCSSSBSSCSSCCSEEECCSSSBTCB
T ss_pred cCCCCCcccccchhhhhhccccCCceEECCEEEcCCCCCCCCC
Confidence 9999999999999888889999899999999999999 99998
|
| >4e8g_A Enolase, mandelate racemase/muconate lactonizing enzyme, N domain protein; putative racemase, nysgrc, structural genomics, PSI-biology; 2.00A {Paracoccus denitrificans} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-72 Score=565.34 Aligned_cols=351 Identities=15% Similarity=0.251 Sum_probs=304.0
Q ss_pred eeEEEEEEEEEEeec-cccccccceeEEeeeEEEEEEEEcCCceEEEEeecC-CCCCcchH-HHHHHHHHHhhHhcCCCC
Q 014285 65 VDVQRAEGRELNVAL-SAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV-PLVTGDQT-KALVKVREACQFLRQSPP 141 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl-~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~-~~~s~~~~-~~~~~~~~~~~~l~g~~~ 141 (427)
|||++|+++.+++|+ +.||.++.++.+.++.++|+|+|++|++|||||.+. |.|+.+.. .....+++++|.|+|+++
T Consensus 23 MkI~~i~~~~~~~pl~~~p~~~s~g~~~~~~~~~V~i~td~G~~G~GE~~~~~~~~~~~~~~~~~~~l~~l~p~l~G~d~ 102 (391)
T 4e8g_A 23 MKIAEIHVYAHDLPVKDGPYTIASSTVWSLQTTLVKIVADSGLAGWGETCPVGPTYAPSHALGARAALAEMAPGLIGANP 102 (391)
T ss_dssp CCEEEEEEEEEEC---------------CCEEEEEEEEETTSCEEEEEECCSSTTTSSCCHHHHHHHHHHHGGGGTTCCT
T ss_pred CEEEEEEEEEEeeeCCCCCcccccceeeeeeEEEEEEEECCCCEEEecCcCCCCccCCccHHHHHHHHHHHHHHHCCCCc
Confidence 999999999999999 999999999999999999999999999999999987 66765433 334456679999999999
Q ss_pred CCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhhcCC
Q 014285 142 TTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGF 220 (427)
Q Consensus 142 ~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf 220 (427)
.+++.+|+.|++.+.|+ +++++|||||||||+||..|+|||+||||. ++++|+|++++..+++++.+++++++++||
T Consensus 103 ~~~~~~~~~l~~~~~g~--~~A~said~ALwDl~gK~~g~Pl~~LLGg~~r~~v~~y~s~~~~~~e~~~~~a~~~~~~G~ 180 (391)
T 4e8g_A 103 LQPLVLRRRMDGLLCGH--NYAKAAIDIAAYDLMGKHYGVRVADLLGGVAAERVPSYYATGIGQPDEIARIAAEKVAEGF 180 (391)
T ss_dssp TCHHHHHHHHHTTCSSC--HHHHHHHHHHHHHHHHHHHTCBGGGGTTCCSCSEEECCEEECSCCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHcCChHHHhcCCCCCCcEEEeEEcCCCCHHHHHHHHHHHHHcCC
Confidence 99999999998766554 578999999999999999999999999997 689999999999999999999999999999
Q ss_pred cEEEEeccC-CchhhHHHHHHHHH-hC-CCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHH
Q 014285 221 STLKLNVGR-NITADFDVLQAIHA-VH-PHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSN 297 (427)
Q Consensus 221 ~~iKlKiG~-~~~~d~~~l~~ir~-~~-~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~ 297 (427)
++||+|+|. ++++|++++++||+ .+ |++.|+||||++|++++|++++++|++++ + |||||+ +|++++++|++
T Consensus 181 ~~~KlKvg~~~~~~d~~~v~avR~a~gg~~~~L~vDaN~~w~~~~A~~~~~~L~~~~--i-~iEeP~--~~~~~~~~l~~ 255 (391)
T 4e8g_A 181 PRLQIKIGGRPVEIDIETVRKVWERIRGTGTRLAVDGNRSLPSRDALRLSRECPEIP--F-VLEQPC--NTLEEIAAIRG 255 (391)
T ss_dssp SEEEEECCSSCHHHHHHHHHHHHHHHTTTTCEEEEECTTCCCHHHHHHHHHHCTTSC--E-EEESCS--SSHHHHHHHGG
T ss_pred cEEEEcCCCCCHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCCHHHHHHHHHHHhhcC--e-EEecCC--ccHHHHHHHHh
Confidence 999999997 89999999999998 57 99999999999999999999999999987 4 999996 48999999985
Q ss_pred hhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHH
Q 014285 298 FARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLA 376 (427)
Q Consensus 298 ~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla 376 (427)
++++|||+||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++||++||+|+++|++|++
T Consensus 256 ----~~~iPIa~dE~~~~~~~~~~~~~~~a~d~v~ik~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i~~aa~~hla 331 (391)
T 4e8g_A 256 ----RVQHGIYLDESGEDLSTVIRAAGQGLCDGFGMKLTRIGGLQQMAAFRDICEARALPHSCDDAWGGDIIAAACTHIG 331 (391)
T ss_dssp ----GCCSCEEESTTCCSHHHHHHHHHTTCCSEEEEEHHHHTSHHHHHHHHHHHHHTTCCEEEECSSCSHHHHHHHHHHH
T ss_pred ----hCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEeCCcCCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999997 9999999999999999999999999999999999999
Q ss_pred hhcCCcceecc-CCCcccccCCCCCc-eeeeCcEEecCCCCCcccccCCCcC
Q 014285 377 AGLGCIKYVNL-NTPFLLSEDPFVGG-CEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 377 aal~~~~~~e~-~~p~~~~~~~~~~~-~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
++++|..+.+. +..-++..+....+ +.++||++.+|++||||||+|+++|
T Consensus 332 aa~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~i~vp~~PGLGve~d~~~l 383 (391)
T 4e8g_A 332 ATVQPRLNEGVWVAQPYIAQPYDEENGIRIAGGHIDLPKGPGLGITPDESLF 383 (391)
T ss_dssp TTSCGGGEEECCCSGGGCSSCSCTTTCCCEETTEEECCCSSBTSCCCCGGGT
T ss_pred HhCCCccccccccchhhhhhhccccCCceEECCEEECCCCCcCCCccCHHHH
Confidence 99999766542 22222334444444 6789999999999999999999987
|
| >3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-72 Score=563.47 Aligned_cols=352 Identities=21% Similarity=0.319 Sum_probs=320.4
Q ss_pred eeEEEEEEEEEEeeccccccccce--eEEeeeEEEEEEEEcCCceEEEEeecC-CCCCcchHH-HHHHHHHHhhHhcCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLS--SVENVENVAIRVELSNGCVGWGEVAVV-PLVTGDQTK-ALVKVREACQFLRQSP 140 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~--~~~~~~~vlV~v~t~~G~~G~GE~~~~-~~~s~~~~~-~~~~~~~~~~~l~g~~ 140 (427)
|||++|+++.+++|++.||.++.+ +.+.++.++|+|+|++|++|||||.+. +.|+++..+ ....++.+.|.|+|++
T Consensus 3 MkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~~l~~l~p~l~G~d 82 (378)
T 3eez_A 3 LKITRITVYQVDLPLEHPYWLSGGRLKFELLDATLVKLETDAGITGWGEGTPWGHTYVPAHGPGIRAGIETMAPFVLGLD 82 (378)
T ss_dssp CCEEEEEEEEEEEEBSSCCC------CCCEEEEEEEEEEETTCCCEEEEECCSCSSSSSCCHHHHHHHHHHHHHHHTTSC
T ss_pred cEEEEEEEEEEeccCCCceeecCCcceeeeeeEEEEEEEECCCCEEEecccCCCCccCCCcHHHHHHHHHHHHHHhcCCC
Confidence 899999999999999999999987 578899999999999999999999987 666654333 3344567899999999
Q ss_pred CCCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhhcC
Q 014285 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLG 219 (427)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~G 219 (427)
+.+++.+|+.|++.+.|. +++++|||+|||||+||..|+|||+||||. ++++|+|.+++..+++++.+.+++++++|
T Consensus 83 ~~~~~~~~~~l~~~~~g~--~~A~said~ALwDl~gk~~g~Pl~~LlGg~~r~~v~~~~~~~~~~~e~~~~~a~~~~~~G 160 (378)
T 3eez_A 83 PRRLLDVERAMDIALPGH--LYAKSPIDMACWDIAGQAAGLPIADLMGGGSRTPRPIASSVGAKSVEETRAVIDRYRQRG 160 (378)
T ss_dssp TTCHHHHHHHHHHHSSSC--HHHHHHHHHHHHHHHHHHTTSBHHHHTTCCCCSCEEBBCCBCSCCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCCeEEEEEEecCCCHHHHHHHHHHHHhCC
Confidence 999999999998877664 578999999999999999999999999997 68999999999999999999999999999
Q ss_pred CcEEEEeccCCchhhHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHh
Q 014285 220 FSTLKLNVGRNITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNF 298 (427)
Q Consensus 220 f~~iKlKiG~~~~~d~~~l~~ir~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~ 298 (427)
|++||+|+|.++++|++++++||+. ++++.|+||+|++|++++|+++++.|+++++ |||||++ |++++++|++
T Consensus 161 ~~~iKiK~G~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i---~iEqP~~--~~~~~~~l~~- 234 (378)
T 3eez_A 161 YVAHSVKIGGDVERDIARIRDVEDIREPGEIVLYDVNRGWTRQQALRVMRATEDLHV---MFEQPGE--TLDDIAAIRP- 234 (378)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHTTSCCTTCEEEEECTTCCCHHHHHHHHHHTGGGTC---CEECCSS--SHHHHHHTGG-
T ss_pred CCEEEeccCCCHHHHHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHhccCCe---EEecCCC--CHHHHHHHHh-
Confidence 9999999999999999999999995 7899999999999999999999999999974 9999998 8999999975
Q ss_pred hccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHh
Q 014285 299 ARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377 (427)
Q Consensus 299 ~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaa 377 (427)
++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+++||+|++++++|+++
T Consensus 235 ---~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~ik~~~~GGit~~~~ia~~A~~~g~~~~~~~~~es~i~~aa~~hlaa 311 (378)
T 3eez_A 235 ---LHSAPVSVDECLVTLQDAARVARDGLAEVFGIKLNRVGGLTRAARMRDIALTHGIDMFVMATGGSVLADAEALHLAA 311 (378)
T ss_dssp ---GCCCCEEECTTCCSHHHHHHHHHTTCCSEEEEEHHHHTSHHHHHHHHHHHHHTTCEEEEECSSCSHHHHHHHHHHHH
T ss_pred ---hCCCCEEECCCCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHcCCEEEcCCCCCCHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred hcCCcce-eccCCCcccccCCCCC-ceeeeCcEEecCCCCCcccccCCCcCC
Q 014285 378 GLGCIKY-VNLNTPFLLSEDPFVG-GCEVSGAIYNFTNARGQGGFLKWTIVS 427 (427)
Q Consensus 378 al~~~~~-~e~~~p~~~~~~~~~~-~~~~~~G~i~~p~~pGlGve~d~~~v~ 427 (427)
+++|..+ .+++++.++.++++.+ ++.++||++.+|++||||||+|+++|.
T Consensus 312 a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l~ 363 (378)
T 3eez_A 312 TIPDHACHAVWACQDMLTVDIAGGRGPRNIDGHLHLPETPGLGVHPDEDALG 363 (378)
T ss_dssp TSCGGGBCCBCCSGGGBSCCTTTTCSSCCBTTEECCCCSSBTSCCCCTTSSC
T ss_pred hCCCccceeeccccchhhhhcccCCCCeeECCEEECCCCCCCCcccCHHHHh
Confidence 9998544 4778877778888877 788999999999999999999999873
|
| >2chr_A Chloromuconate cycloisomerase; 3.00A {Cupriavidus necator} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-72 Score=567.22 Aligned_cols=353 Identities=23% Similarity=0.357 Sum_probs=320.1
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecC--CCCCcchHHHHH-HHHH-HhhHhcCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTKALV-KVRE-ACQFLRQSP 140 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~--~~~s~~~~~~~~-~~~~-~~~~l~g~~ 140 (427)
|||++|+++.+++||++||.++.++.+.++.++|+|+| ||++|||||.+. |.++++..+... .+++ +.|.|+|++
T Consensus 1 MKI~~i~~~~~~~Pl~~p~~~s~~~~~~~~~v~V~i~t-dG~~G~GE~~~~~~p~~~~e~~~~~~~~i~~~l~p~liG~d 79 (370)
T 2chr_A 1 MKIDAIEAVIVDVPTKRPIQMSITTVHQQSYVIVRVYS-EGLVGVGEGGSVGGPVWSAECAETIKIIVERYLAPHLLGTD 79 (370)
T ss_dssp CCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEB-TTBCCEEECCCSTTTTTSSCCHHHHHHHHHHHTHHHHTTSC
T ss_pred CEEEEEEEEEEEcccCCceEccceEEEEEEEEEEEEEE-CCcEEEEEecCCCCCccCcccHHHHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999999999999999999998 599999999876 456665544433 3343 789999999
Q ss_pred CCCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCH-HHHHHHHHHHhhc
Q 014285 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSP-AEASELASKYCKL 218 (427)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~-~~~~~~~~~~~~~ 218 (427)
+.+++.+|+.|.+...++ +++++||||||||++||..|+|||+||||. ++.+++|.++...+. +.+.+.++.+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~--~~A~said~AlwDl~gK~~g~Pl~~lLGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (370)
T 2chr_A 80 AFNVSGALQTMARAVTGN--ASAKAAVEMALLDLKARALGVSIAELLGGPLRSAIPIAWTLASGDTKRDLDSAVEMIERR 157 (370)
T ss_dssp TTCHHHHHHHHHTTCSSC--HHHHHHHHHHHHHHHHHHTTCCHHHHTTCCSCSEEEBEEEECSSCHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHhhccccc--HHHHHHHHHHHHHHHHHhcCCccccccCCccccccceeeeeccCchhhhHHHHHHHHhhc
Confidence 999999999998766554 578999999999999999999999999998 577888888776554 4556777778889
Q ss_pred CCcEEEEeccC-CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHH
Q 014285 219 GFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVS 296 (427)
Q Consensus 219 Gf~~iKlKiG~-~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~ 296 (427)
||+++|+|+|. ++++|+++++++|+ +++++.||||||++|++++|+++++.|+++++ .|||||++++|+++|++|+
T Consensus 158 g~~~~K~Kvg~~~~~~d~~~v~avr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~--~~iEeP~~~~d~~~~~~l~ 235 (370)
T 2chr_A 158 RHNRFKVKLGFRSPQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIPELEALGV--ELIEQPVGRENTQALRRLS 235 (370)
T ss_dssp SCCEEEEECSSSCHHHHHHHHHHHHHHTTTTSEEEEECTTCCCTHHHHHHHHHHHTTTC--CEEECCSCSSCHHHHHHHH
T ss_pred ccceeecccccCChHHHHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHHHHhcCC--ceecCCCChhhhhhhhHHh
Confidence 99999999996 78999999999999 58999999999999999999999999999997 4999999999999999998
Q ss_pred HhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHH
Q 014285 297 NFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHL 375 (427)
Q Consensus 297 ~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hl 375 (427)
+ ++++|||+||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++++|+|++++++|+
T Consensus 236 ~----~~~ipIa~dE~~~~~~~~~~~~~~~a~d~i~~d~~~~GGit~~~~ia~~A~~~gi~~~~~~~~~~~i~~aa~~hl 311 (370)
T 2chr_A 236 D----NNRVAIMADESLSTLASAFDLARDRSVDVFSLKLCNMGGVSATQKIAAVAEASGIASYGGTMLDSTIGTSVALQL 311 (370)
T ss_dssp H----HCSSEEEESSSCCSHHHHHHHHTTTCCSEECCCHHHHTSHHHHHHHHHHHHHHTCEECCCCCSCCHHHHHHHHHH
T ss_pred h----hccCCccCCccCCCHHHHHHHHHcCCCcEEEeCCcccCCHHHHHHHHHHHHHcCCeEEeCCCcccHHHHHHHHHH
Confidence 6 68999999999999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred HhhcCCccee-ccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 376 AAGLGCIKYV-NLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 376 aaal~~~~~~-e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+++++|..+. +++.|+.+.++++.+++.++||++.+|++||||||+|+|+|
T Consensus 312 aa~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~l 363 (370)
T 2chr_A 312 YSTVPSLPFGCELIGPFVLADTLSHEPLEIRDYELQVPTGVGHGMTLDEDKV 363 (370)
T ss_dssp HTTSSCCTTCBCCCHHHHBSCCSBSCCCCBCSSEEECCCSSSTTCCBCHHHH
T ss_pred HHhCCCCCcccccCchhhhhhhccCCCceEECCEEECCCCCCCCceECHHHH
Confidence 9999998765 67777777888888999999999999999999999999875
|
| >1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-72 Score=566.05 Aligned_cols=353 Identities=24% Similarity=0.356 Sum_probs=323.3
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCC--CCCcchHHHH-HHHHH-HhhHhcCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVP--LVTGDQTKAL-VKVRE-ACQFLRQSP 140 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~--~~s~~~~~~~-~~~~~-~~~~l~g~~ 140 (427)
|||++|+++.+++|++.||.++.++.+.++.++|+|+ ++|++|||||.+.+ .|++++.+.. ..+++ +.|.|+|++
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~-d~G~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~p~l~G~d 79 (370)
T 1chr_A 1 MKIDAIEAVIVDVPTKRPIQMSITTVHQQSYVIVRVY-SEGLVGVGEGGSVGGPVWSAECAETIKIIVERYLAPHLLGTD 79 (370)
T ss_dssp CCCCCCCEECCCCCCCCCCTTCCSSCCCCCCEECCBC-SSSCBCCEECCCBTTBTTSSCCHHHHHHHHHHHTHHHHTTSC
T ss_pred CEEEEEEEEEEEccCCCCeEccceEEeeeeEEEEEEE-ECCcEEEEccccCCCCCCCCCCHHHHHHHHHHHHHHHHcCCC
Confidence 7999999999999999999999999999999999999 99999999998764 4665544433 33444 789999999
Q ss_pred CCCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhh-c
Q 014285 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCK-L 218 (427)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~-~ 218 (427)
+.+++.+|+.|++.+.|+ +++++||||||||++||..|+|||+||||. +++||+|++++..+++++.++++++++ +
T Consensus 80 ~~~~~~~~~~l~~~~~g~--~~A~said~ALwDl~gK~~g~Pl~~LLGg~~r~~v~~~~t~~~~~~~~~~~~~~~~~~~~ 157 (370)
T 1chr_A 80 AFNVSGALQTMARAVTGN--ASAKAAVEMALLDLKARALGVSIAELLGGPLRSAIPIAWTLASGDTKRDLDSAVEMIERR 157 (370)
T ss_dssp TTCHHHHHHHHHHHCSSC--HHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSEEEBEEEECSSSHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCCceeEEEEecCCCcHHHHHHHHHHHHHC
Confidence 999999999998877664 578999999999999999999999999997 789999999888888877666666666 8
Q ss_pred CCcEEEEeccC-CchhhHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHH
Q 014285 219 GFSTLKLNVGR-NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVS 296 (427)
Q Consensus 219 Gf~~iKlKiG~-~~~~d~~~l~~ir~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~ 296 (427)
||++||+|+|. ++++|++++++||+. ++++.|+||+|++|++++|++++++|+++++ .|||||++++|++++++|+
T Consensus 158 G~~~~KiKvg~~~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~~~~~~~~l~ 235 (370)
T 1chr_A 158 RHNRFKVKLGFRSPQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIPELEALGV--ELIEQPVGRENTQALRRLS 235 (370)
T ss_dssp CCCEEEEECSSSCSHHHHHHHHHHHHHSSTTCCEEEECTTCCCTTHHHHHTHHHHTTTE--EEEECCSCTTCHHHHHHHH
T ss_pred CCCEEEEecCCCCHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCC--CEEECCCCcccHHHHHHHH
Confidence 99999999997 789999999999995 6789999999999999999999999999987 5999999999999999998
Q ss_pred HhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHH
Q 014285 297 NFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHL 375 (427)
Q Consensus 297 ~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hl 375 (427)
+ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+++||+|++++++|+
T Consensus 236 ~----~~~iPia~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~hl 311 (370)
T 1chr_A 236 D----NNRVAIMADESLSTLASAFDLARDRSVDVFSLKLCNMGGVSATQKIAAVAEASGIASYGGTMLDSTIGTSVALQL 311 (370)
T ss_dssp H----HSCSEEEESSSCCSHHHHHHHHTTTSCSEEEECTTTSCSHHHHHHHHHHHHHHTCEEEECCSCCTTHHHHHHHHH
T ss_pred h----hCCCCEEeCCCcCCHHHHHHHHHcCCCCEEEECccccCCHHHHHHHHHHHHHcCCeEEecCCCccHHHHHHHHHH
Confidence 6 68999999999999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred HhhcCCccee-ccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 376 AAGLGCIKYV-NLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 376 aaal~~~~~~-e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+++++|+.+. |+++|+.+.++++.+++.++||++.+|++||||+|+|+++|
T Consensus 312 aaa~~~~~~~~~~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l 363 (370)
T 1chr_A 312 YSTVPSLPFGCELIGPFVLADTLSHEPLEIRDYELQVPTGVGHGMTLDEDKV 363 (370)
T ss_dssp HTTSSCCTTCBCCCTGGGSSCCSBSSCCEEETTEEECCCCSBTSCCBCHHHH
T ss_pred HHhCCCCccchhcccchhhhhcccCCCceeECCEEECCCCCcCCcccCHHHH
Confidence 9999998874 88888878889999899999999999999999999999865
|
| >3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-71 Score=560.30 Aligned_cols=345 Identities=18% Similarity=0.253 Sum_probs=317.6
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecC---CCCCcchHHHHHHHHHHhhHhcCCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV---PLVTGDQTKALVKVREACQFLRQSPP 141 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~---~~~s~~~~~~~~~~~~~~~~l~g~~~ 141 (427)
|||++|+++.+++|++.||.+ +.++|+|+|++|++|||||.+. |.|++++. ...+.+.|.|+|+++
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~--------~~~~V~v~td~G~~G~GE~~~~~~~p~~~~e~~---~i~~~l~p~liG~d~ 69 (391)
T 3gd6_A 1 MKITDLELHAVGIPRHTGFVN--------KHVIVKIHTDEGLTGIGEMSDFSHLPLYSVDLH---DLKQGLLSILLGQNP 69 (391)
T ss_dssp CCEEEEEEEEEEEEBTTSCEE--------EEEEEEEEETTSCEEEEEECCCSSSSSCCCCHH---HHHHHHHHHHTTCCT
T ss_pred CEEEEEEEEEEecccCCCccc--------ceEEEEEEECCCCEEEeccccccCCCccchhHH---HHHHHHHHHhCCCCc
Confidence 899999999999999999875 7899999999999999999876 55666543 222458899999999
Q ss_pred CCHHHHHHHHHHHCC-----CChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeec----CCCHHHHHHH
Q 014285 142 TTLNFALDEIARILP-----GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIP----AVSPAEASEL 211 (427)
Q Consensus 142 ~~~~~~~~~l~~~~~-----g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~----~~~~~~~~~~ 211 (427)
.+++.+|+.|++.+. +...+++++|||||||||+||.+|+|||+||||. +++||+|++++ ..+++++.++
T Consensus 70 ~~~~~~~~~l~~~~~~~~~~~~g~~~A~said~ALwDl~gK~~g~Pl~~LLGg~~r~~v~~y~t~~~~~~~~~~e~~~~~ 149 (391)
T 3gd6_A 70 FDLMKINKELTDNFPETMYYYEKGSFIRNGIDNALHDLCAKYLDISVSDFLGGRVKEKIKVCYPIFRHRFSEEVESNLDV 149 (391)
T ss_dssp TCHHHHHHHHHHHSCCCSCTTCHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSEEEBCEEECCCSSTTHHHHHHHH
T ss_pred cCHHHHHHHHHHHhhhcccccCcchHHHHHHHHHHHHHHhcccCCcHHHHhCCCcCCeEEeeEEecccccCCCHHHHHHH
Confidence 999999999987643 1234689999999999999999999999999995 88999999998 7789999999
Q ss_pred HHHHhhcCCcEEEEeccCCchhhHHHHHHHHHh-CCCcEEE-EeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCCh
Q 014285 212 ASKYCKLGFSTLKLNVGRNITADFDVLQAIHAV-HPHCSFI-LDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW 289 (427)
Q Consensus 212 ~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~-~~~~~L~-vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~ 289 (427)
+++++++||++||+|+|.++++|++++++||+. ++++.|+ ||+|++|++++|+++++.|+++++.+.|||||++++|+
T Consensus 150 a~~~~~~G~~~~KiKvG~~~~~d~~~v~avR~a~g~~~~l~~vDan~~~~~~~A~~~~~~l~~~~i~~~~iEqP~~~~d~ 229 (391)
T 3gd6_A 150 VRQKLEQGFDVFRLYVGKNLDADEEFLSRVKEEFGSRVRIKSYDFSHLLNWKDAHRAIKRLTKYDLGLEMIESPAPRNDF 229 (391)
T ss_dssp HHHHHHTTCCEEEEECSSCHHHHHHHHHHHHHHHGGGCEEEEEECTTCSCHHHHHHHHHHHTTCCSSCCEEECCSCTTCH
T ss_pred HHHHHHcCCCEEEEeeCCCHHHHHHHHHHHHHHcCCCCcEEEecCCCCcCHHHHHHHHHHHHhcCCCcceecCCCChhhH
Confidence 999999999999999999999999999999995 8999999 99999999999999999999998733599999999999
Q ss_pred hhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHH
Q 014285 290 SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLA 368 (427)
Q Consensus 290 ~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig 368 (427)
+++++|++ ++++|| ||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+++||+|+
T Consensus 230 ~~~~~l~~----~~~iPI--dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i~ 303 (391)
T 3gd6_A 230 DGLYQLRL----KTDYPI--SEHVWSFKQQQEMIKKDAIDIFNISPVFIGGLTSAKKAAYAAEVASKDVVLGTTQELSVG 303 (391)
T ss_dssp HHHHHHHH----HCSSCE--EEECCCHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCCCCHHH
T ss_pred HHHHHHHH----HcCCCc--CCCCCCHHHHHHHHHcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCEEEecCCCccHHH
Confidence 99999986 689999 999999999999999999999999999997 99999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCcce-eccCCCcccccCCCCCceeeeCcEEecCC--CCCcccccCCCcC
Q 014285 369 TGFALHLAAGLGCIKY-VNLNTPFLLSEDPFVGGCEVSGAIYNFTN--ARGQGGFLKWTIV 426 (427)
Q Consensus 369 ~~a~~hlaaal~~~~~-~e~~~p~~~~~~~~~~~~~~~~G~i~~p~--~pGlGve~d~~~v 426 (427)
++|++|++++++|+.+ .|+++|..+.++++.+++.++||++.+|+ +||||+|+|+++|
T Consensus 304 ~aa~~hlaaa~~~~~~~~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~~~PGlGv~~d~~~l 364 (391)
T 3gd6_A 304 TAAMAHLGCSLTNINHTSDPTGPELYVGDVVKNRVTYKDGYLYAPDRSVKGLGIELDESLL 364 (391)
T ss_dssp HHHHHHHHTTCSSCCSCBCCCGGGGBSCCSBSSCCCEETTEEECCCTTSSBTSCCBCHHHH
T ss_pred HHHHHHHHHhCCCCCccccccchhhhhhccccCCceeECCEEEeCCCCCCCCCcccCHHHH
Confidence 9999999999999999 89998887888999999999999999999 9999999999865
|
| >1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-71 Score=554.45 Aligned_cols=353 Identities=33% Similarity=0.531 Sum_probs=328.3
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchH-HHHHHHHH-HhhHhcCCCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQT-KALVKVRE-ACQFLRQSPPT 142 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~-~~~~~~~~-~~~~l~g~~~~ 142 (427)
|||++++++.+++|++.||.++.++++.++.++|+|+|++|.+||||+.+.+.|+++.. .....+++ ++|.|+|+++.
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~l~~~l~~~l~g~~~~ 80 (366)
T 1tkk_A 1 MKIIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSIESAIHHVLKPALLGKSLA 80 (366)
T ss_dssp CBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEECCCTTTTCCCHHHHHHHHHHTHHHHHTTCBGG
T ss_pred CEEEEEEEEEEEccccCCEEecCeeEEEeeEEEEEEEECCCCEEEEEecCCCCcCCCCHHHHHHHHHHHHHHHHcCCCcc
Confidence 79999999999999999999999999999999999999999999999998877776433 34455666 89999999999
Q ss_pred CHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecCCCHHHHHHHHHHHhhcCCcE
Q 014285 143 TLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFST 222 (427)
Q Consensus 143 ~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~ 222 (427)
+++.+|+.|.+.+.+. +++++||||||||++||..|+|||+||||.++++|+|++++..+++++.+.+++++++||++
T Consensus 81 ~~~~~~~~l~~~~~~~--~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~v~~~~~~~~~~~~~~~~~a~~~~~~Gf~~ 158 (366)
T 1tkk_A 81 GYEAILHDIQHLLTGN--MSAKAAVEMALYDGWAQMCGLPLYQMLGGYRDTLETDYTVSVNSPEEMAADAENYLKQGFQT 158 (366)
T ss_dssp GHHHHHHHHHHSSSSC--HHHHHHHHHHHHHHHHHHTTSBHHHHHTCCCSEEEBCEEECSCCHHHHHHHHHHHHHHTCCE
T ss_pred cHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCceeeeEEecCCCHHHHHHHHHHHHHcCCCe
Confidence 9999999998765543 57999999999999999999999999999888999999998889999999999999999999
Q ss_pred EEEeccC-CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhh--CCCCCceEeCCCCCCChhhHHHHHHh
Q 014285 223 LKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLND--MGVIPVLFEQPVHRDDWSGLHDVSNF 298 (427)
Q Consensus 223 iKlKiG~-~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~--~~l~~~~iEqP~~~~d~~~~~~L~~~ 298 (427)
||+|+|. +++.|++++++||+ .++++.|+||+|++|++++|+++++.|++ +++ .|||||++++|++++++|++
T Consensus 159 iKik~g~~~~~~d~~~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~~~i--~~iEqP~~~~d~~~~~~l~~- 235 (366)
T 1tkk_A 159 LKIKVGKDDIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGI--ELVEQPVHKDDLAGLKKVTD- 235 (366)
T ss_dssp EEEECCSSCHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHTTCCE--EEEECCSCTTCHHHHHHHHH-
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCc--eEEECCCCcccHHHHHHHHh-
Confidence 9999997 89999999999999 57999999999999999999999999999 886 59999999999999999986
Q ss_pred hccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHh
Q 014285 299 ARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377 (427)
Q Consensus 299 ~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaa 377 (427)
++++||++||++.+..+++++++.+++|++++|++++| ++++++++++|+++|+++++|+++||++++++++|+++
T Consensus 236 ---~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~~a~~~laa 312 (366)
T 1tkk_A 236 ---ATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVGSMIETKLGITAAAHFAA 312 (366)
T ss_dssp ---HCSSCEEECTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHH
T ss_pred ---hCCCCEEEcCCCCCHHHHHHHHHhCCCCEEEeehhhhcCHHHHHHHHHHHHHcCCcEEecCccccHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred hcCCcceeccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCc
Q 014285 378 GLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTI 425 (427)
Q Consensus 378 al~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~ 425 (427)
++++..++|+++|+++.++++.+++.++||++.+|++||||+++|++.
T Consensus 313 a~~~~~~~el~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~ 360 (366)
T 1tkk_A 313 SKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLGIIGAALL 360 (366)
T ss_dssp HCTTEEEECCCGGGGBSSCCEEESCEEETTEEECCCSSBTCEEEECC-
T ss_pred cCCCCceecccchhhcccccccCCceEECCEEECCCCCccceEecccc
Confidence 999999999998887778888888899999999999999999999864
|
| >3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-70 Score=557.50 Aligned_cols=352 Identities=18% Similarity=0.266 Sum_probs=318.1
Q ss_pred eeEEEEEEEEEEeeccc--cccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCC
Q 014285 65 VDVQRAEGRELNVALSA--PLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPT 142 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~--p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~ 142 (427)
|||++|+++.+++|+++ ||.++.++++.++.++|+|+|++|++||||+.. ++++.+.. ...++.+.|.|+|+++.
T Consensus 3 MkI~~i~~~~~~~pl~~~~p~~~a~~~~~~~~~~~V~v~td~G~~G~GE~~~-~~~~~~~~--~~~i~~l~p~l~G~d~~ 79 (389)
T 3ozy_A 3 LKITEVKAHALSTPIPERMRVESGAGLKLNRQMILVEVRTDEGVTGVGSPSG-PYDLAVLK--RAIEDVIGPQLIGEDPA 79 (389)
T ss_dssp CCEEEEEEEEEEEECCGGGCCEETTEEBCEEEEEEEEEEETTSCCEEECCCS-SSCHHHHH--HHHHHTTHHHHTTSCTT
T ss_pred CEEEEEEEEEEeccCcCCCcccccccccccceEEEEEEEECCCCEEEEecCC-CCCchHHH--HHHHHHHHHHHcCCCcc
Confidence 89999999999999999 999999999999999999999999999999983 33222222 22345689999999999
Q ss_pred CHHHHHHHHHHH--CC----CChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCc-eeeeeee-c-CCCHHHHHHHH
Q 014285 143 TLNFALDEIARI--LP----GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNS-LSTAITI-P-AVSPAEASELA 212 (427)
Q Consensus 143 ~~~~~~~~l~~~--~~----g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~-ip~~~~i-~-~~~~~~~~~~~ 212 (427)
+++.+|+.|++. +. +...+++++|||+|||||+||.+|+|||+||||. +++ +|+|.++ + ..+++++.+.+
T Consensus 80 ~~~~~~~~l~~~~~~~~~g~~~~~~~A~said~AlwDl~gK~~g~Pl~~LLGg~~r~~~v~~y~~~~~~~~~~e~~~~~a 159 (389)
T 3ozy_A 80 NINYLWHKVFHGEVSRNLGHRSVGIAAMSGVDIALWDLKGRAMNQPIYQLLGGKFHTRGVRAYASSIYWDLTPDQAADEL 159 (389)
T ss_dssp CHHHHHHHHHHHTHHHHHCSBSHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTSCSSTTCEEEEEEEECSSCCHHHHHHHH
T ss_pred hHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHHHHHhHhHcCCCHHHHhCCcccCCceeeEEecCCCCCCHHHHHHHH
Confidence 999999999764 21 2235789999999999999999999999999998 788 9999988 7 78999999999
Q ss_pred HHHhhcCCcEEEEeccCCchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhh
Q 014285 213 SKYCKLGFSTLKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSG 291 (427)
Q Consensus 213 ~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~ 291 (427)
++++++||++||+|+|.++++|++++++||+ .++++.|+||+|++|++++|+++++.|+++++ .|||||++++|+++
T Consensus 160 ~~~~~~G~~~iKiKvG~~~~~d~~~v~avR~a~g~d~~l~vDan~~~~~~~A~~~~~~l~~~~i--~~iEqP~~~~d~~~ 237 (389)
T 3ozy_A 160 AGWVEQGFTAAKLKVGRAPRKDAANLRAMRQRVGADVEILVDANQSLGRHDALAMLRILDEAGC--YWFEEPLSIDDIEG 237 (389)
T ss_dssp HHHHHTTCSEEEEECCSCHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTTC--SEEESCSCTTCHHH
T ss_pred HHHHHCCCCEEeeccCCCHHHHHHHHHHHHHHcCCCceEEEECCCCcCHHHHHHHHHHHHhcCC--CEEECCCCcccHHH
Confidence 9999999999999999999999999999999 58999999999999999999999999999997 49999999999999
Q ss_pred HHHHH-HhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHH
Q 014285 292 LHDVS-NFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLAT 369 (427)
Q Consensus 292 ~~~L~-~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~ 369 (427)
+++|+ + ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++ +|+|++
T Consensus 238 ~~~l~~~----~~~iPIa~dE~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~ia~~A~~~gi~~~~h~~-~~~i~~ 312 (389)
T 3ozy_A 238 HRILRAQ----GTPVRIATGENLYTRNAFNDYIRNDAIDVLQADASRAGGITEALAISASAASAHLAWNPHTF-NDIITV 312 (389)
T ss_dssp HHHHHTT----CCSSEEEECTTCCHHHHHHHHHHTTCCSEECCCTTTSSCHHHHHHHHHHHHHTTCEECCCCT-TSHHHH
T ss_pred HHHHHhc----CCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEecCC-CcHHHH
Confidence 99998 5 78999999999999999999999999999999999997 99999999999999999999974 899999
Q ss_pred HHHHHHHhhcCCcceeccCCC-cccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 370 GFALHLAAGLGCIKYVNLNTP-FLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 370 ~a~~hlaaal~~~~~~e~~~p-~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
++++|++++++|+.++|++.. ..+.++++.+++.++||++.+|++||||+|+|+++|
T Consensus 313 aa~~hlaaa~~~~~~~e~d~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l 370 (389)
T 3ozy_A 313 AANLHLVAASPHPAMFEWDITHNDLMTRLASYDLKLENGLVQPPQGPGLGFEIDWDFV 370 (389)
T ss_dssp HHHHHHHHHCCSCCCEEEECSSCGGGTTSBSCCCCCBTTEECCCCSSBTCSCBCHHHH
T ss_pred HHHHHHHHhCCCCeeEEecCccchhhHhhccCCceeECCEEECCCCCcCCcccCHHHH
Confidence 999999999999988876532 234567777888999999999999999999999865
|
| >3qld_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, isomerase; HET: MSE; 1.85A {Alicyclobacillus acidocaldarius LAA1} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-70 Score=557.32 Aligned_cols=349 Identities=22% Similarity=0.335 Sum_probs=313.6
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecC--CCCCcchHH-HHHHHHH-HhhHhc---
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTK-ALVKVRE-ACQFLR--- 137 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~--~~~s~~~~~-~~~~~~~-~~~~l~--- 137 (427)
|||++++++.+++|+++||.++.++++.++.++|+|+|++|++|||||.+. |.|++++.+ ....+++ +.|.|+
T Consensus 1 MkI~~i~~~~~~lpl~~p~~~s~g~~~~~~~~~V~v~td~G~~G~GE~~~~~~p~~~~e~~~~~~~~l~~~l~p~l~~~~ 80 (388)
T 3qld_A 1 MSLQTCVLHRLSLPLKFPMRTAHGHIREKQAILVQLVDADGIEGWSECVALAEPTYTEECTDTAWVMLVHHLVPRFARWL 80 (388)
T ss_dssp -CEEEEEEEEEEEEEEEEEECSSSEEEEEEEEEEEEEETTSCEEEEEECCCSSTTSSSCCHHHHHHHHHHTHHHHHHHHH
T ss_pred CEEEEEEEEEEecccCCceEccceEEEeeeEEEEEEEECCCCEEEEecccCCCCccccccHHHHHHHHHHHHHHHHhhhh
Confidence 899999999999999999999999999999999999999999999999864 567765543 3334444 788998
Q ss_pred ----CCCCCCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecCCC-HHHHHHHH
Q 014285 138 ----QSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVS-PAEASELA 212 (427)
Q Consensus 138 ----g~~~~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~-~~~~~~~~ 212 (427)
|+++.+++.+++.+. .+.|. +++++||||||||++||..|+|||+||||.+++||+|+++++.+ ++++.+++
T Consensus 81 ~~~~G~~~~~~~~~~~~~~-~~~g~--~~A~said~ALwDl~gk~~g~Pl~~LLGg~r~~v~~~~~~~~~~~~e~~~~~~ 157 (388)
T 3qld_A 81 RAASQDQDVDPRTVCEALR-DVRGN--RMSVAAIEMAVWDWYAARTGQPLVGLLGGGRDRVEVSATLGMSESLDVLIQSV 157 (388)
T ss_dssp TSGGGSSCCCGGGGGGGGT-TCCSC--HHHHHHHHHHHHHHHHHHHTCCHHHHTTCCCSEEEBEEEECCCSCHHHHHHHH
T ss_pred cccCCCCccCHHHHHHHHH-HccCc--HHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCeEEEeEEecCCCCHHHHHHHH
Confidence 999988888877663 24443 67899999999999999999999999999999999999998876 99999999
Q ss_pred HHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhH
Q 014285 213 SKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGL 292 (427)
Q Consensus 213 ~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~ 292 (427)
++++++||++||+|+|. ++|++++++||+..|++.||||||++|++++|++ +++|+++++ .|||||++++|++++
T Consensus 158 ~~~~~~G~~~~K~Kv~~--~~d~~~v~avR~~~~~~~l~vDaN~~~~~~~A~~-~~~l~~~~i--~~iEeP~~~~d~~~~ 232 (388)
T 3qld_A 158 DAAVEQGFRRVKLKIAP--GRDRAAIKAVRLRYPDLAIAADANGSYRPEDAPV-LRQLDAYDL--QFIEQPLPEDDWFDL 232 (388)
T ss_dssp HHHHHTTCSEEEEECBT--TBSHHHHHHHHHHCTTSEEEEECTTCCCGGGHHH-HHHGGGGCC--SCEECCSCTTCHHHH
T ss_pred HHHHHhCCCeEEEEeCc--HHHHHHHHHHHHHCCCCeEEEECCCCCChHHHHH-HHHHhhCCC--cEEECCCCcccHHHH
Confidence 99999999999999986 6899999999997799999999999999999996 899999997 499999999999999
Q ss_pred HHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHH
Q 014285 293 HDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGF 371 (427)
Q Consensus 293 ~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a 371 (427)
++|++ ++++|||+||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+++||+|++++
T Consensus 233 ~~l~~----~~~ipIa~dE~~~~~~~~~~~~~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i~~aa 308 (388)
T 3qld_A 233 AKLQA----SLRTPVCLDESVRSVRELKLTARLGAARVLNVKPGRLGGFGATLRALDVAGEAGMAAWVGGMYETGVGRVH 308 (388)
T ss_dssp HHHHH----HCSSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHH
T ss_pred HHHHH----hCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEECchhhCCHHHHHHHHHHHHHCCCeEEecCccchHHHHHH
Confidence 99986 68999999999999999999999999999999999997 99999999999999999999999999999999
Q ss_pred HHHHHhhcCCccee-ccCC-CcccccCCCCCce-eeeCcEEecCCCCCcccccCCCcC
Q 014285 372 ALHLAAGLGCIKYV-NLNT-PFLLSEDPFVGGC-EVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 372 ~~hlaaal~~~~~~-e~~~-p~~~~~~~~~~~~-~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
++|+++ ++|+.+. +++. ..++.++++.+++ .++||++.+|++||||+|+|+++|
T Consensus 309 ~~~laa-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l 365 (388)
T 3qld_A 309 GLIAAA-LPLMRYATDLGPSDRYFEQDVLKEPIAFVEPGVIQVPQCAGVADWVDRDAV 365 (388)
T ss_dssp HHHHHT-STTBCSCBSCCCGGGTCSSCSBSSCCCCSBTTEEECCCCSSSGGGBCHHHH
T ss_pred HHHHHc-CCCCCcccccCcchhhHHhhcccCCCceeECCEEECCCCCcCCceeCHHHH
Confidence 999987 8887765 5553 2446678888888 899999999999999999999865
|
| >4hpn_A Putative uncharacterized protein; enolase, enzyme function initiative, EFI, structural genomic isomerase; 1.60A {Agrobacterium tumefaciens} PDB: 4ggb_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-70 Score=550.04 Aligned_cols=349 Identities=17% Similarity=0.255 Sum_probs=307.4
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCCCH
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTL 144 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~~~ 144 (427)
|||++|+++.+++||++||.++.++++.++.++|||+|++|++|||||.+.+ .. .....+.+.|.|+|+++.++
T Consensus 1 MKIt~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~i~td~G~~G~GE~~~~~-----~~-~~~~~~~~~~~liG~d~~~~ 74 (378)
T 4hpn_A 1 MKITAVRTHLLEHRLDTPFESASMRFDRRAHVLVEIECDDGTVGWGECLGPA-----RP-NAAVVQAYSGWLIGQDPRQT 74 (378)
T ss_dssp CCEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEECSCH-----HH-HHHHHHHHHTTTTTSCTTCH
T ss_pred CEEEEEEEEEEeccCCCCeECCCEEEEEEEEEEEEEEECCCCEEEEEecCCc-----ch-HHHHHHHHHHHHcCCChHHH
Confidence 8999999999999999999999999999999999999999999999996531 11 11224567899999999999
Q ss_pred HHHHHHHHHHCCC----ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCC-----CHHHHHHHHHH
Q 014285 145 NFALDEIARILPG----SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAV-----SPAEASELASK 214 (427)
Q Consensus 145 ~~~~~~l~~~~~g----~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~-----~~~~~~~~~~~ 214 (427)
+.+|+.|++.+.. ....++++|||+||||++||..|+|||+||||. ++++|+|.+.+.. +++++.+++++
T Consensus 75 e~~~~~l~~~~~~~~~~g~~~~A~said~AlwDl~gk~~g~Pl~~lLGg~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 154 (378)
T 4hpn_A 75 EKIWAVLYNALRDQGQRGLSLTALSGIDIALWDIKGKHYGASISMLLGGRWRESVRAYATGSFKRDNVDRVSDNASEMAE 154 (378)
T ss_dssp HHHHHHHHHHTCTTCSSTHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSEEEEEEECCCBCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHhhhhccCccccccCCccccCcceeeeeccccccchhHHHHHHHHHH
Confidence 9999999876432 134578999999999999999999999999997 6889999886542 34566777788
Q ss_pred HhhcCCcEEEEeccCCchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHH
Q 014285 215 YCKLGFSTLKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLH 293 (427)
Q Consensus 215 ~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~ 293 (427)
++++||+++|+|+|.++++|++++++||+ .+|++.||||||++|++++|++++++|+++++ .|||||++++|+++++
T Consensus 155 ~~~~Gf~~~K~k~g~~~~~di~~v~avr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEeP~~~~d~~~~~ 232 (378)
T 4hpn_A 155 RRAEGFHACKIKIGFGVEEDLRVIAAVREAIGPDMRLMIDANHGYTVTEAITLGDRAAGFGI--DWFEEPVVPEQLDAYA 232 (378)
T ss_dssp HHHTTCSEEEEECCSCHHHHHHHHHHHHHHHTTTSEEEEECTTCCCHHHHHHHHHHHGGGCC--SCEECCSCTTCHHHHH
T ss_pred HHHhccceecccccCChHHHHHHHHHHHHhcCCcEEEEEecCcccCHHHHHHHHhhhhhccc--chhhcCCCccchhhhH
Confidence 88999999999999999999999999999 58999999999999999999999999999997 4999999999999999
Q ss_pred HHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHH
Q 014285 294 DVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFA 372 (427)
Q Consensus 294 ~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~ 372 (427)
+|++ ++++|||+||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+ ++++++++++
T Consensus 233 ~l~~----~~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~~ia~~A~~~gi~v~~h~-~~~~i~~aa~ 307 (378)
T 4hpn_A 233 RVRA----GQPIPVAGGETWHGRYGMWQALSAGAVDILQPDLCGCGGFSEIQKIATLATLHGVRIVPHV-WGTGVQIAAA 307 (378)
T ss_dssp HHHH----HSSSCEEECTTCCHHHHHHHHHHTTCCSEECCBTTTTTHHHHHHHHHHHHHHHTCEECCBC-CSSHHHHHHH
T ss_pred HHHh----hCCceeeCCcCccchHhHHHHHHcCCCCEEeeCCeeCCChhHHHHHHHHHHHcCCeEEeCC-CCcHHHHHHH
Confidence 9986 78999999999999999999999999999999999997 9999999999999999998875 6899999999
Q ss_pred HHHHhhcCCccee--------ccCC-CcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 373 LHLAAGLGCIKYV--------NLNT-PFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 373 ~hlaaal~~~~~~--------e~~~-p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+|+++++++..+. +++. ...+.++++.++++++||++.+|++||||||+|+|+|
T Consensus 308 ~h~~aa~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~l 370 (378)
T 4hpn_A 308 LQFMAAMTPDPVRVNPIEPIMEFDRTHNPFRQAVLREPLEAVNGVVTIPDGPGLGIEINRDAL 370 (378)
T ss_dssp HHHHHHCCCSSCCSSCCCCCEEEECSCCHHHHHTBSSCCCCBTTEEECCCSSBTSCCBCHHHH
T ss_pred HHHHHHcCcccccccccccceeeccccchhhhhhccCCCeeECCEEECCCCCCCcceECHHHH
Confidence 9999988664322 2221 1224466788889999999999999999999999875
|
| >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-70 Score=549.01 Aligned_cols=352 Identities=20% Similarity=0.398 Sum_probs=325.6
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcch-HHHHHHHHH-HhhHhcCCCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQ-TKALVKVRE-ACQFLRQSPPT 142 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~-~~~~~~~~~-~~~~l~g~~~~ 142 (427)
|||++++++.+++|++.||.++.++.+.++.++|+|+|++|.+||||+.+.+.|+++. ......+++ ++|.|+|+++.
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~v~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~i~~~l~~~l~g~d~~ 80 (369)
T 2p8b_A 1 MKITAIHLYAIRLPLRNPFVISYGSYSDMPSIIVKMETDEGIIGYGEGVADDHVTGESWESTFHTLKHTLTPALIGQNPM 80 (369)
T ss_dssp CCEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECCCHHHHSCCHHHHHHHHHHTHHHHHTTCCTT
T ss_pred CEEEEEEEEEEeccccCCeEecceeEEeeeEEEEEEEECCCCEEEEEecCCCCcCCCCHHHHHHHHHHHHHHHHcCCCcc
Confidence 7999999999999999999999999999999999999999999999999876555533 334445666 89999999999
Q ss_pred CHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhhcCCc
Q 014285 143 TLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGFS 221 (427)
Q Consensus 143 ~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~ 221 (427)
+++.+|+.|.+...+. +++++||||||||++||..|+|||+||||. ++++|+|.+++..+++++.+.+++++++||+
T Consensus 81 ~~~~~~~~l~~~~~~~--~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~v~~~~~i~~~~~~~~~~~a~~~~~~Gf~ 158 (369)
T 2p8b_A 81 NIEKIHDMMDNTIYGV--PTAKAAIDIACFDIMGKKLNQPVYQLIGGRYHEEFPVTHVLSIADPENMAEEAASMIQKGYQ 158 (369)
T ss_dssp CHHHHHHHHHHHCSCC--HHHHHHHHHHHHHHHHHHTTSBGGGGTTCCCCSCEECCEEECSCCHHHHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCceeeeEEecCCChHHHHHHHHHHHHcCcC
Confidence 9999999998776543 578999999999999999999999999998 7899999999988999999999999999999
Q ss_pred EEEEeccCCchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHH-HHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhh
Q 014285 222 TLKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAV-EVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFA 299 (427)
Q Consensus 222 ~iKlKiG~~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~-~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~ 299 (427)
++|+|+|.+++.|++++++||+ .++++.|++|+|++|++++|+ ++++.|+++++ .|||||++++|++++++|++
T Consensus 159 ~iKik~g~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~~-- 234 (369)
T 2p8b_A 159 SFKMKVGTNVKEDVKRIEAVRERVGNDIAIRVDVNQGWKNSANTLTALRSLGHLNI--DWIEQPVIADDIDAMAHIRS-- 234 (369)
T ss_dssp EEEEECCSCHHHHHHHHHHHHHHHCTTSEEEEECTTTTBSHHHHHHHHHTSTTSCC--SCEECCBCTTCHHHHHHHHH--
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCC--cEEECCCCcccHHHHHHHHH--
Confidence 9999999999999999999999 589999999999999999999 99999999997 49999999999999999986
Q ss_pred ccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhh
Q 014285 300 RDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAG 378 (427)
Q Consensus 300 r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaa 378 (427)
++++||++||++.+..+++++++.+++|++++|++++| ++++++++++|+++|+++++|+++||++++++++|++++
T Consensus 235 --~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~~a~~~laa~ 312 (369)
T 2p8b_A 235 --KTDLPLMIDEGLKSSREMRQIIKLEAADKVNIKLMKCGGIYPAVKLAHQAEMAGIECQVGSMVESSVASSAGFHVAFS 312 (369)
T ss_dssp --TCCSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCSSCCHHHHHHHHHHHTT
T ss_pred --hCCCCEEeCCCCCCHHHHHHHHHhCCCCEEEeecchhCCHHHHHHHHHHHHHcCCcEEecCCCccHHHHHHHHHHHHc
Confidence 68999999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred cCCcceeccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 379 LGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 379 l~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
++++.+.|+++|+++.++ .+++.++||++.+|++||||+++|+++|
T Consensus 313 ~~~~~~~el~~~~~~~~~--~~~~~~~~G~~~~p~~PGlGv~~d~~~l 358 (369)
T 2p8b_A 313 KKIITSVELTGPLKFTKD--IGNLHYDVPFIRLNEKPGLGIEINEDTL 358 (369)
T ss_dssp CTTEEEECCCHHHHBSCC--SSCCCCBTTEECCCCCSBTCCCCCHHHH
T ss_pred CCCCceeccCcchhcccc--CCCceeECCEEeCCCCCcCCCccCHHHH
Confidence 999999998888655556 6778899999999999999999999865
|
| >4h2h_A Mandelate racemase/muconate lactonizing enzyme; enolase, mandelate racemase subgroup, enzyme function initia EFI, structural genomics; HET: 0XW; 1.70A {Pelagibaca bermudensis} PDB: 2pmq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-69 Score=546.29 Aligned_cols=354 Identities=18% Similarity=0.292 Sum_probs=312.5
Q ss_pred CcceeeEEEEEEEEEEeec-cccccccceeEEeeeEEEEEEEEcCCceEEEEeecCC-CCCcchHH-HHHHHHHHhhHhc
Q 014285 61 ETFWVDVQRAEGRELNVAL-SAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVP-LVTGDQTK-ALVKVREACQFLR 137 (427)
Q Consensus 61 ~~~~~~I~~i~~~~~~~pl-~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~-~~s~~~~~-~~~~~~~~~~~l~ 137 (427)
.+-.|||++|+++.+++|+ +.||+++.++.+.++.++|||+||+|++|||||++.+ .++.+..+ ....++.+.+.+.
T Consensus 6 ~~~sMKI~~I~~~~~~lPl~~~p~~~a~g~~~~~~~~lV~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 85 (376)
T 4h2h_A 6 HHHSLKIAEIQLFQHDLPVVNGPYRIASGDVWSLTTTIVKIIAEDGTIGWGETCPVGPTYAEAHAGGALAALEVLASGLA 85 (376)
T ss_dssp ---CCBEEEEEEEEEEEEBTTCCBCCTTCCBSEEEEEEEEEEETTSCEEEEEECCSSSSSSSCCHHHHHHHHHHHHHTTT
T ss_pred CCCCeEEeEEEEEEEecccCCCCeEecCEEEEEEEEEEEEEEECCCCEEEEeecCCCCCcchhhHHHHHHHHHHHHHHhc
Confidence 3456999999999999998 6699999999999999999999999999999998764 34333333 3334567889999
Q ss_pred CCCCCCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHh
Q 014285 138 QSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYC 216 (427)
Q Consensus 138 g~~~~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~ 216 (427)
|+++.+.+ ++..+...+.|+ +++++|||+||||++||..|+|||+||||. ++++|+|++++..+++++.+++++++
T Consensus 86 g~d~~~~~-~~~~~~~~~~~~--~~A~said~ALwDl~gK~~g~Pl~~LLGG~~r~~v~~y~s~~~~~~~~~~~~a~~~~ 162 (376)
T 4h2h_A 86 GAEALPLP-LHTRMDSLLCGH--NYAKSALDIAVHDLWGKRLGVPVHELLGGALTDSVSSYYSLGVMEPDEAARQALEKQ 162 (376)
T ss_dssp TCBSSHHH-HHHHHHHHCSCC--HHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSEEECEEEECSCCHHHHHHHHHHHH
T ss_pred CCccCcHH-HHHHHHHhhccc--HHHHHHHHHhhhHHHHHhcCCCceecCCCCcCCceeEeeecccCCHHHHHHHHHHHH
Confidence 99998876 445555556665 468999999999999999999999999997 78999999999999999999999999
Q ss_pred hcCCcEEEEeccC-CchhhHHHHHHHHH-h-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHH
Q 014285 217 KLGFSTLKLNVGR-NITADFDVLQAIHA-V-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLH 293 (427)
Q Consensus 217 ~~Gf~~iKlKiG~-~~~~d~~~l~~ir~-~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~ 293 (427)
++||+++|+|+|. ++++|+++++++|+ + ++++.||||||++|++++|+++++.|+++++ |+|||++ ++++++
T Consensus 163 ~~G~~~~KiKvg~~~~~~di~~v~~vr~a~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~---~iEeP~~--~~~~~~ 237 (376)
T 4h2h_A 163 REGYSRLQVKLGARPIEIDIEAIRKVWEAVRGTGIALAADGNRGWTTRDALRFSRECPDIPF---VMEQPCN--SFEDLE 237 (376)
T ss_dssp HHTCSEEEEECCSSCHHHHHHHHHHHHHHHTTSCCEEEEECTTCCCHHHHHHHHHHCTTSCE---EEESCSS--SHHHHH
T ss_pred hcCceEEEEecCCCCHHHHHHHHHHHHhhccCCeeEEEEeeccCCCHHHHHHHHHHHhhccc---cccCCcc--hhhhHh
Confidence 9999999999996 67899999999998 5 7999999999999999999999999999874 9999995 588899
Q ss_pred HHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHH
Q 014285 294 DVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFA 372 (427)
Q Consensus 294 ~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~ 372 (427)
+|++ .+++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++++++|+.+|+
T Consensus 238 ~l~~----~~~~pia~dE~~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~~ia~~a~~~gi~~~~~~~~~~~i~~aa~ 313 (376)
T 4h2h_A 238 AIRP----LCHHALYMDEDGTSLNTVITAAATSLVDGFGMKVSRIGGLQHMRAFRDFCAARNLPHTCDDAWGGDIVSAAC 313 (376)
T ss_dssp HHGG----GCCSCEEESTTCCSHHHHHHHHHTTCCSEECCBHHHHTSHHHHHHHHHHHHHHTCCEECBCSSCSHHHHHHH
T ss_pred hhhh----cccCccccCcccCCHHHHHHHHHhhccCccccccceeCCcHHHHHHHHHHHHcCCCEEeCCCCccHHHHHHH
Confidence 9875 68999999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred HHHHhhcCCcce--eccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 373 LHLAAGLGCIKY--VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 373 ~hlaaal~~~~~--~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+|++++.++... .++..|+...++.+.++++++||++.+|++||||||+|+|+|
T Consensus 314 ~hlaa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~vp~~PGLGveld~e~L 369 (376)
T 4h2h_A 314 THIASTVLPRLMEGAWLAQPYVAEHYDAENGVRIEGGRIRVPQGPGLGLTIDPERF 369 (376)
T ss_dssp HHHHTTSCGGGEEECCCSGGGBSCCSSTTTCCCEETTEEECCCSSBTSCCCCTTTT
T ss_pred HHHHHhCCccccccccccCchhhhhhccCCCCeEECCEEECCCCCCCCcEECHHHc
Confidence 999988755322 245667666677778889999999999999999999999987
|
| >1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-69 Score=546.03 Aligned_cols=353 Identities=23% Similarity=0.374 Sum_probs=325.2
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecC--CCCCcchH-HHHHHHHH-HhhHhcCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQT-KALVKVRE-ACQFLRQSP 140 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~--~~~s~~~~-~~~~~~~~-~~~~l~g~~ 140 (427)
|||++++++.+++|++.||+++.++++.++.++|+|+| +|++||||+.+. +.|+++.. .....+++ +.|.++|++
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~t-~G~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~~~l~G~d 79 (370)
T 1nu5_A 1 MKIEAISTTIVDVPTRRPLQMSFTTVHKQSYVIVQVKA-GGLVGIGEGGSVGGPTWGSESAETIKVIIDNYLAPLLVGKD 79 (370)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEE-TTEEEEEEECCSTTTTTSSCCHHHHHHHHHHTHHHHHTTSB
T ss_pred CEEEEEEEEEEEccccCCEEecceEEEeceeEEEEEEE-CCEEEEEEeccCCCCcccCCCHHHHHHHHHHhhHHHHcCCC
Confidence 79999999999999999999999999999999999999 999999999887 56766433 33444554 789999999
Q ss_pred CCCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhh-c
Q 014285 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCK-L 218 (427)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~-~ 218 (427)
+.+++.+|+.|.+...+. +++++||||||||++||..|+|||+||||. ++++|+|++++..+++++.+.++++++ +
T Consensus 80 ~~~~~~~~~~l~~~~~~~--~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~v~~~~~~~~~~~e~~~~~a~~~~~~~ 157 (370)
T 1nu5_A 80 ASNLSQARVLMDRAVTGN--LSAKAAIDIALHDLKARALNLSIADLIGGTMRTSIPIAWTLASGDTARDIDSALEMIETR 157 (370)
T ss_dssp TTCHHHHHHHHHHHCSSC--HHHHHHHHHHHHHHHHHHTTCBHHHHHTCCSCSEEEBCEEECSSCHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHcCCcHHHHhCCCcCCceEeeEEecCCCHHHHHHHHHHHHHhC
Confidence 999999999998776543 578999999999999999999999999997 789999999988899999999999999 9
Q ss_pred CCcEEEEeccC-CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHH
Q 014285 219 GFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVS 296 (427)
Q Consensus 219 Gf~~iKlKiG~-~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~ 296 (427)
||+++|+|+|. +++.|++++++||+ .++++.|++|+|++|++++|+++++.|+++++ .|||||++++|++++++|+
T Consensus 158 Gf~~iKik~g~~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~~~~~~~~l~ 235 (370)
T 1nu5_A 158 RHNRFKVKLGARTPAQDLEHIRSIVKAVGDRASVRVDVNQGWDEQTASIWIPRLEEAGV--ELVEQPVPRANFGALRRLT 235 (370)
T ss_dssp SCSEEEEECSSSCHHHHHHHHHHHHHHHGGGCEEEEECTTCCCHHHHHHHHHHHHHHTC--CEEECCSCTTCHHHHHHHH
T ss_pred CccEEEEecCCCChHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCc--ceEeCCCCcccHHHHHHHH
Confidence 99999999996 78899999999999 57899999999999999999999999999997 4999999999999999998
Q ss_pred HhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHH
Q 014285 297 NFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHL 375 (427)
Q Consensus 297 ~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hl 375 (427)
+ ++++||++||++.+..+++++++.+++|++++|++++| ++++++++++|+++|+++++|+++||+|++++++|+
T Consensus 236 ~----~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~hl 311 (370)
T 1nu5_A 236 E----QNGVAILADESLSSLSSAFELARDHAVDAFSLKLCNMGGIANTLKVAAVAEAAGISSYGGTMLDSTVGTAAALHV 311 (370)
T ss_dssp H----HCSSEEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEEECCSSCCHHHHHHHHHH
T ss_pred H----hCCCCEEeCCCCCCHHHHHHHHHhCCCCEEEEchhhcCCHHHHHHHHHHHHHcCCcEEecCCcchHHHHHHHHHH
Confidence 6 68999999999999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred HhhcCCcce-eccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 376 AAGLGCIKY-VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 376 aaal~~~~~-~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
++++++..+ .|+++|+.+.++++.+++.++||++.+|++||||+++|++.+
T Consensus 312 aaa~~~~~~~~e~~~~~~~~~d~~~~~~~~~~G~~~~p~~pGlGv~~d~~~l 363 (370)
T 1nu5_A 312 YATLPSLPYGCELIGPWVLGDRLTQQDLEIKDFEVHLPLGSGLGVDLDHDKV 363 (370)
T ss_dssp HTTSSCCTTCBCCCHHHHBSSCSBSSCCCEETTEEECCCSSBTSCCBCHHHH
T ss_pred HhcCCCCCcccccCchhhhccccccCCceEECCEEECCCCCCCCceeCHHHH
Confidence 999999888 788877666788888889999999999999999999999865
|
| >4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-70 Score=552.93 Aligned_cols=347 Identities=18% Similarity=0.264 Sum_probs=309.1
Q ss_pred ceeeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCC
Q 014285 63 FWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPT 142 (427)
Q Consensus 63 ~~~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~ 142 (427)
.-|||++|+++.+++|++.||.++.++.+.++.++|+|+|++|++|||||.+. +. ....++.+.|.|+|+++.
T Consensus 22 ~mMkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~v~td~G~~G~GE~~~g-----~~--~~~~i~~l~p~liG~d~~ 94 (398)
T 4dye_A 22 SMMKITDVDVWVVNLPLVNPFTSSFETKTGETRTVVRVRTDSGVEGWGETMWG-----AP--VAAIVRRMAPDLIGTSPF 94 (398)
T ss_dssp -CCCEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEEECS-----HH--HHHHHHHHHHHHTTCCTT
T ss_pred CCceEEEEEEEEEeecccccccccccccccceEEEEEEEECCCCEEEEeecCc-----hH--HHHHHHHHHHHHcCCCcc
Confidence 33999999999999999999999999999999999999999999999999752 22 223346789999999999
Q ss_pred CHHHHHHHHHHH--CCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeee------cCC---CHHHHHH
Q 014285 143 TLNFALDEIARI--LPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITI------PAV---SPAEASE 210 (427)
Q Consensus 143 ~~~~~~~~l~~~--~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i------~~~---~~~~~~~ 210 (427)
+++.+|+.|+.. ..|...+++++|||||||||+||..|+|||+||||. +++||+|+++ +.. +++++.+
T Consensus 95 ~~~~~~~~l~~~~~~~g~~~~~A~said~ALwDl~gK~~g~Pl~~LLGg~~r~~v~~y~s~~~~~~~g~~~~~~~e~~~~ 174 (398)
T 4dye_A 95 ALEAFHRKQHMVPFFYGYLGYAAIAAVDVACWDAMGKATGQSVTDLLGGAVRDEVPITALITRADAPGATPADLPKAMAE 174 (398)
T ss_dssp CHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSEEEBEEEECGGGSTTCCTTTHHHHHHH
T ss_pred CHHHHHHHHHhhhhhhccccHHHHHHHHHHHHHHHHHHcCCcHHHHcCCCcCCeEEEEEEEeccccCCcccCCCHHHHHH
Confidence 999999988531 112223579999999999999999999999999997 6899999987 443 3689999
Q ss_pred HHHHHhhc-CCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCCh
Q 014285 211 LASKYCKL-GFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW 289 (427)
Q Consensus 211 ~~~~~~~~-Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~ 289 (427)
++++++++ ||++||+|+|.++++|++++++||+..|++.|+||||++|++++|+++++.|+++++ .|||||++ |+
T Consensus 175 ~a~~~~~~~G~~~~K~KvG~~~~~d~~~v~avR~~~~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i--~~iEqP~~--d~ 250 (398)
T 4dye_A 175 HAVRVVEEGGFDAVKLKGTTDCAGDVAILRAVREALPGVNLRVDPNAAWSVPDSVRAGIALEELDL--EYLEDPCV--GI 250 (398)
T ss_dssp HHHHHHHHHCCSEEEEECCSCHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCC--SEEECCSS--HH
T ss_pred HHHHHHHhcCCCEEEEecCCCHHHHHHHHHHHHHhCCCCeEEeeCCCCCCHHHHHHHHHHHhhcCC--CEEcCCCC--CH
Confidence 99999999 999999999988999999999999966999999999999999999999999999997 49999999 89
Q ss_pred hhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHH
Q 014285 290 SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLA 368 (427)
Q Consensus 290 ~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig 368 (427)
+++++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.|++|+
T Consensus 251 ~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~~~e~~i~ 326 (398)
T 4dye_A 251 EGMAQVKA----KVRIPLCTNMCVVRFEDFAPAMRLNAVDVIHGDVYKWGGIAATKALAAHCETFGLGMNLHSGGELGIA 326 (398)
T ss_dssp HHHHHHHH----HCCSCEEESSSCCSGGGHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEEECCSCCCHHH
T ss_pred HHHHHHHh----hCCCCEEeCCcCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEcCCcchHHH
Confidence 99999986 68999999999999999999999999999999999997 99999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCcceeccCC-CcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 369 TGFALHLAAGLGCIKYVNLNT-PFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 369 ~~a~~hlaaal~~~~~~e~~~-p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
.+|++|++++++|+.+. .+. ...+.++++ +++.++||++.+|++||||+|+|+++|
T Consensus 327 ~aa~l~laaa~p~~~~~-~d~~~~~~~~d~~-~~~~~~~G~i~vp~~PGlGve~d~~~l 383 (398)
T 4dye_A 327 TAAHLAVVSSTPVLSRA-IDSMYYLHADDII-EPLHLENGRLRVPSGPGLGVSVDEDKL 383 (398)
T ss_dssp HHHHHHHHHTCTTCCSC-BCCSGGGBSCCSB-SCCCEETTEEECCCSSBTCCCBCHHHH
T ss_pred HHHHHHHHhcCCcccee-ecccchhhhhhcc-CCceeeCCEEECCCCCCCCceeCHHHH
Confidence 99999999999987653 332 334556666 678899999999999999999999865
|
| >2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-69 Score=548.42 Aligned_cols=354 Identities=19% Similarity=0.290 Sum_probs=313.1
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCC-CCcchH-HHHHHHHH-Hhh-HhcCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPL-VTGDQT-KALVKVRE-ACQ-FLRQSP 140 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~-~s~~~~-~~~~~~~~-~~~-~l~g~~ 140 (427)
|||++++++.+++|++.||.++.++++.++.++|+|+|++|.+||||+.+.+. |+++.. .....+++ ++| .|+|++
T Consensus 3 MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~~i~~~l~~~~l~G~d 82 (397)
T 2qde_A 3 LKITKVEVIPISTPMKRAQLMRGATLARIDGVLLKLHSDEGLVGIADAGDTSSWYRGETQDSITSMICDFFAPKVLLGED 82 (397)
T ss_dssp CCEEEEEEEEEEECCCC-----------EEEEEEEEEETTSCEEEEECCCCCTTTTCCCHHHHHHHHHHTHHHHTTTTCC
T ss_pred CEEEEEEEEEEeeeccCCeEeccceEeeCceEEEEEEECCCCEEEEEEecccCccCCCCHHHHHHHHHHhhhhHhhcCCC
Confidence 89999999999999999999999999999999999999999999999998765 455433 34445666 889 899999
Q ss_pred CCCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhhcC
Q 014285 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLG 219 (427)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~G 219 (427)
+.+++.+|+.|.....| .+++++||||||||++||..|+|||+||||. ++++|+|++++..+++++.+.+++++++|
T Consensus 83 ~~~~~~l~~~l~~~~~~--~~~a~~aid~AlwDl~ak~~g~Pl~~llGg~~~~~vp~~~~~g~~~~e~~~~~a~~~~~~G 160 (397)
T 2qde_A 83 PTKIEKIVGRMDILTRD--NNQAKATVDFALHDLVGKRFGVPVYQLLGGKTIERIPLGLVLGAGEPEAVAEEALAVLREG 160 (397)
T ss_dssp TTCHHHHHHHHHHHCSS--CHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSSEEBCEECCCSCHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHHHhhhhhcc--chhHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCCCcceEEECCCCCHHHHHHHHHHHHHhh
Confidence 99999999999544544 4689999999999999999999999999997 78999999988789999999999999999
Q ss_pred CcEEEEeccCCchhhHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHh
Q 014285 220 FSTLKLNVGRNITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNF 298 (427)
Q Consensus 220 f~~iKlKiG~~~~~d~~~l~~ir~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~ 298 (427)
|+++|+|+|.+++.|++++++||+. ++++.|++|+|++|++++|+++++.|+++++ .|||||++++|++++++|++
T Consensus 161 f~~vKik~g~~~~~~~e~v~avR~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~~~~~~~~l~~- 237 (397)
T 2qde_A 161 FHFVKLKAGGPLKADIAMVAEVRRAVGDDVDLFIDINGAWTYDQALTTIRALEKYNL--SKIEQPLPAWDLDGMARLRG- 237 (397)
T ss_dssp CSCEEEECCSCHHHHHHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGCC--SCEECCSCTTCHHHHHHHHT-
T ss_pred hhheeecccCCHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHHHhCCC--CEEECCCChhhHHHHHHHHh-
Confidence 9999999999999999999999995 8999999999999999999999999999997 49999999999999999985
Q ss_pred hccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHh
Q 014285 299 ARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377 (427)
Q Consensus 299 ~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaa 377 (427)
++++||++||++.+..+++++++.+++|++++|++++| ++++++++++|+++|+++++||++||+||+++++|+++
T Consensus 238 ---~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~ig~aa~~hlaa 314 (397)
T 2qde_A 238 ---KVATPIYADESAQELHDLLAIINKGAADGLMIKTQKAGGLLKAQRWLTLARLANLPVICGCMVGSGLEASPAAHLLA 314 (397)
T ss_dssp ---TCSSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCCEEECCCSCCHHHHHHHHHHHH
T ss_pred ---hCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred hcC------C-----cceeccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 378 GLG------C-----IKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 378 al~------~-----~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+++ + ..++++++|+++.++++.+++.++||++.+|++||||+++|++++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 374 (397)
T 2qde_A 315 ANDWIAQFPQENAGPLHIHDCLNSRDIDNDIALNVPRFEGGYLYPNDGPGLGIELNEDLV 374 (397)
T ss_dssp HCTTGGGSCBCCCHHHHHTTCSSGGGCCCCSBTTCCEEETTEEECCCSSBTCCCBCHHHH
T ss_pred hCCcccccccccccceeeeecCCchhhhhccccCCceEECCEEECCCCCcCCcccCHHHH
Confidence 998 6 223466777666788888899999999999999999999998865
|
| >3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-70 Score=552.36 Aligned_cols=352 Identities=19% Similarity=0.296 Sum_probs=300.6
Q ss_pred eeeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecC-CCCCcchHHHHHHHH-HHhhHhcCCCC
Q 014285 64 WVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV-PLVTGDQTKALVKVR-EACQFLRQSPP 141 (427)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~-~~~s~~~~~~~~~~~-~~~~~l~g~~~ 141 (427)
.|||++|+++.+++|++.||.++.++++.++.++|+|+|++|++||||+.+. +. .++..... .++ .+.|.|+|+++
T Consensus 9 ~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~-~~~~~~~~-~i~~~l~p~liG~d~ 86 (392)
T 3ddm_A 9 SITPARVRAHVFRYPVSTPVKTSFGTMHDRPAVLVEVEDSDGAVGWGEVWCNFPA-CGAEHRAR-LVETVLAPLLTARAF 86 (392)
T ss_dssp CBCCCEEEEEEEEEEC-----------CEEEEEEEEEECTTSCEEEEECCCCSST-THHHHHHH-HHHHTHHHHHTTSCB
T ss_pred CCEEEEEEEEEEeccCCCcccCcCceeecceEEEEEEEECCCCEEEEEeccCCCC-CchHHHHH-HHHHHHHHHhCCCCc
Confidence 4999999999999999999999999999999999999999999999999632 21 12221221 224 48899999999
Q ss_pred CCHHHHHHHHHHH------CCCC--hhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecCCCHHHHHHHHH
Q 014285 142 TTLNFALDEIARI------LPGS--EFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELAS 213 (427)
Q Consensus 142 ~~~~~~~~~l~~~------~~g~--~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~ 213 (427)
.+++.+|+.|++. ..|+ ..+++++|||||||||+||..|+|||+||||..+++|+|.+. . +++++.+.++
T Consensus 87 ~~~~~~~~~l~~~~~~~~~~~g~~g~~~~A~said~ALwDl~gK~~g~Pl~~LLGg~~~~v~~y~~g-~-~~e~~~~~a~ 164 (392)
T 3ddm_A 87 ADPAQAFAHLEARTAVLAIQTGEPGPLAQAIAGLDIALCDLAARRAGQPLWAWLGGSGDRIGVYASG-I-NPENPEDVVA 164 (392)
T ss_dssp SSHHHHHHHHHHTTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHTTCSCCEEEEEEEE-E-CSSSHHHHHH
T ss_pred CCHHHHHHHHHhhhhhhhhhcCCcchHHHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCceeEEeec-C-CHHHHHHHHH
Confidence 9999999999764 1233 346789999999999999999999999999999999998873 2 3788889999
Q ss_pred HHhhcCCcEEEEeccCCchhhHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCC-hhh
Q 014285 214 KYCKLGFSTLKLNVGRNITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDD-WSG 291 (427)
Q Consensus 214 ~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d-~~~ 291 (427)
+++++||++||+|+|.++++|++++++||+. ++++.|+||+|++|++++|+++++.|+++++ .|||||++++| +++
T Consensus 165 ~~~~~G~~~iKlK~g~~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i--~~iEeP~~~~d~~~~ 242 (392)
T 3ddm_A 165 RKAAEGYRAFKLKVGFDDARDVRNALHVRELLGAATPLMADANQGWDLPRARQMAQRLGPAQL--DWLEEPLRADRPAAE 242 (392)
T ss_dssp HHHHHTCCCEEEECSSCHHHHHHHHHHHHHHHCSSSCEEEECTTCCCHHHHHHHHHHHGGGCC--SEEECCSCTTSCHHH
T ss_pred HHHHcCCCEEEEecCCCHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhCC--CEEECCCCccchHHH
Confidence 9999999999999999999999999999995 8999999999999999999999999999997 49999999999 999
Q ss_pred HHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHH
Q 014285 292 LHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATG 370 (427)
Q Consensus 292 ~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~ 370 (427)
+++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+ +||+|+++
T Consensus 243 ~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~-~~~~i~~a 317 (392)
T 3ddm_A 243 WAELAQ----AAPMPLAGGENIAGVAAFETALAARSLRVMQPDLAKWGGFSGCLPVARAVVAAGLRYCPHY-LGAGIGLQ 317 (392)
T ss_dssp HHHHHH----HCSSCEEECTTCCSHHHHHHHHHHTCEEEECCCTTTTTHHHHHHHHHHHHHHTTCEECCEE-CSCHHHHH
T ss_pred HHHHHH----hcCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCCHHHHHHHHHHHHHcCCEEEecC-CchHHHHH
Confidence 999986 68999999999999999999999999999999999997 9999999999999999999887 69999999
Q ss_pred HHHHHHhhcCC---cceeccCCCcccccCCCCCce-eeeCcEEecCCCCCcccccCCCcC
Q 014285 371 FALHLAAGLGC---IKYVNLNTPFLLSEDPFVGGC-EVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 371 a~~hlaaal~~---~~~~e~~~p~~~~~~~~~~~~-~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+++|++++++| ..|+|++.......+++.+++ +++||++.+|++||||+|+|+++|
T Consensus 318 a~~hl~aa~p~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~l 377 (392)
T 3ddm_A 318 ASAHLLAAVPGLASPGLLGVDANDNPLRSLLSPALATLHEGRITLGGAPGLGVTPDLAAL 377 (392)
T ss_dssp HHHHHHHHSCCSSSCCEEEEESSCCHHHHTTCGGGGGCBTTEEECCSCSBTSCCCCHHHH
T ss_pred HHHHHHHhCCCCCCCceEEecCCcchHHHhccCCcceeeCCEEECCCCCcCCceeCHHHH
Confidence 99999999999 667777643221223777788 899999999999999999999875
|
| >3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-69 Score=543.50 Aligned_cols=342 Identities=17% Similarity=0.259 Sum_probs=309.9
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHH-HHHhhHhcCCCCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKV-REACQFLRQSPPTT 143 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~-~~~~~~l~g~~~~~ 143 (427)
|||++++++++++|++.||.++.++.+.++.++|+|+|++|++||||+.+.+.. .......+ +.+.|.|+|+++.+
T Consensus 27 mkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~v~td~G~~G~GE~~~~~~~---~~~~~~~i~~~l~p~l~G~d~~~ 103 (383)
T 3toy_A 27 AAITGVTARAVITPMKRPLRNAFGVIDSGPLVLIDVTTDQGVTGHSYLFAYTRL---ALKPLVHLVEDIGRELAGKALVP 103 (383)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEESSSCEEEEEEECSSGG---GHHHHHHHHHHHHHHTTTCBCCH
T ss_pred CEEEEEEEEEEeccCCCcccCccccccceeEEEEEEEECCCCEEEEEeeCCCCc---hHHHHHHHHHHHHHHhCCCCCCc
Confidence 999999999999999999999999999999999999999999999999875421 11222233 56899999999999
Q ss_pred HHHHHHHHHHHC--CCC--hhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecCCCHHHHHHHHHHHhhc-
Q 014285 144 LNFALDEIARIL--PGS--EFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKL- 218 (427)
Q Consensus 144 ~~~~~~~l~~~~--~g~--~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~- 218 (427)
++ +|+.|++.. .|+ ..+++++|||||||||+||..|+|||+||||.++++|+|.+++..+++++.+++++++++
T Consensus 104 ~e-~~~~l~~~~~~~g~~g~~~~A~said~ALwDl~gK~~g~Pl~~LLGg~~~~v~~y~s~g~~~~e~~~~~a~~~~~~~ 182 (383)
T 3toy_A 104 VD-LMKAMDAKFRLLGWQGLVGMAVSGLDMAFWDALGQLAGKPVVELLGGSARPIPAYDSYGVLDARDDERTLRTACDEH 182 (383)
T ss_dssp HH-HHHHHHHHTTTTCCSTHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCCCCEEEEEECSSCCHHHHHHHHHHHHHTS
T ss_pred HH-HHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceEEeEecCCCCHHHHHHHHHHHHHcc
Confidence 99 999998753 232 346899999999999999999999999999999999999998889999999999999999
Q ss_pred CCcEEEEeccC-CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHH
Q 014285 219 GFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVS 296 (427)
Q Consensus 219 Gf~~iKlKiG~-~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~ 296 (427)
||++||+|+|. ++++|++++++||+ .+|++.|+||+|++|++++|++++++|+++++ .|||||++++|++++++|+
T Consensus 183 G~~~~KlKvG~~~~~~d~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~ 260 (383)
T 3toy_A 183 GFRAIKSKGGHGDLATDEAMIKGLRALLGPDIALMLDFNQSLDPAEATRRIARLADYDL--TWIEEPVPQENLSGHAAVR 260 (383)
T ss_dssp CCCEEEEECCSSCHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCC--SEEECCSCTTCHHHHHHHH
T ss_pred CCcEEEEecCCCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHHHhhCC--CEEECCCCcchHHHHHHHH
Confidence 99999999997 78999999999999 58999999999999999999999999999997 4999999999999999998
Q ss_pred HhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHH
Q 014285 297 NFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHL 375 (427)
Q Consensus 297 ~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hl 375 (427)
+ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.+ +++|+
T Consensus 261 ~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~~~~ia~~A~~~gi~~~~h~~~~------a~lhl 330 (383)
T 3toy_A 261 E----RSEIPIQAGENWWFPRGFAEAIAAGASDFIMPDLMKVGGITGWLNVAGQADAASIPMSSHILPE------ASAHV 330 (383)
T ss_dssp H----HCSSCEEECTTCCHHHHHHHHHHHTCCSEECCCTTTTTHHHHHHHHHHHHHHHTCCBCCCSCHH------HHHHH
T ss_pred h----hcCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEeecCHHH------HHHHH
Confidence 6 68999999999999999999999999999999999997 9999999999999999999999754 57899
Q ss_pred HhhcCCcceeccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 376 AAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 376 aaal~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
++++++..++|+.. +.++++.+++.++|| +.+|++||||+|+|+++|
T Consensus 331 ~aa~p~~~~~e~~~---~~~~~~~~~~~~~~G-i~~p~~PGlGve~d~~~l 377 (383)
T 3toy_A 331 LPVTPTAHFLEVLD---FAGAILTEPLRVIDG-KVTAKGPGLGLAWNESAV 377 (383)
T ss_dssp GGGCTTBCCEEECC---SSGGGBSSCCCCBTT-EECCCCSBTSCCBCHHHH
T ss_pred HHhCCCCceeeccc---hhhhhccCCCeeeCC-EECCCCCcCCccCCHHHH
Confidence 99999998887652 345677788899999 999999999999999875
|
| >3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-69 Score=549.05 Aligned_cols=348 Identities=17% Similarity=0.263 Sum_probs=313.8
Q ss_pred eeeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecC--CCCCcchHHH-HHHHHH-HhhHhcCC
Q 014285 64 WVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTKA-LVKVRE-ACQFLRQS 139 (427)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~--~~~s~~~~~~-~~~~~~-~~~~l~g~ 139 (427)
.|||++|+++.+++|++.||.++.++.+.++.++|+|+| +|++|||||.+. |.|++++.+. ...+++ +.|.|+|+
T Consensus 6 ~MkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~lV~v~t-~G~~G~GE~~~~~~p~~~~et~~~~~~~i~~~l~p~liG~ 84 (400)
T 3mwc_A 6 SARIDGVSLYEIVIPMKIPFQISSGTCYTRRSLVVEIRE-GDLFGYGESAPFEEPFYLGETLETTKVILKNHLLPMILGK 84 (400)
T ss_dssp CCCCCEEEEEEEEEECSSCCCBTTBCCCEEEEEEEEEEE-TTEEEEEEECCBSSTTSTTCBHHHHHHHHHHTHHHHHTTC
T ss_pred CcEEEEEEEEEEeccccCceEccCceEeeeeEEEEEEEE-CCeEEEEecccCCCCccccCcHHHHHHHHHHHHHHHHcCC
Confidence 499999999999999999999999999999999999999 999999999986 5677655443 334444 78999999
Q ss_pred CCCCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhC-------------CCCCceeeeeeecCC-C-
Q 014285 140 PPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFG-------------GASNSLSTAITIPAV-S- 204 (427)
Q Consensus 140 ~~~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llg-------------g~~~~ip~~~~i~~~-~- 204 (427)
++.+++.+|+.|+..+.|+ +++++||||||||++||..|+|||+||| +.+++||+|++++.. +
T Consensus 85 d~~~~e~~~~~l~~~~~g~--~~A~said~ALwDl~gk~~g~Pl~~LLGG~~~~~~~~~~~~~~r~~v~~~~s~g~~~~~ 162 (400)
T 3mwc_A 85 EPLSIEEFNHLIKNGIRGN--HFARCGVENAYWDLIAKKNKISLKAMIEKKMKNLGVKQEYLASNNYIESGAALGIPEDG 162 (400)
T ss_dssp CCSSHHHHHHHHHHSCCSC--HHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHTTCCGGGGCBCSEEEBCEEECCCTTC
T ss_pred CCCCHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHcCCcHHHHhCCcccccccccccccCCCeEEeeEEeccCCCC
Confidence 9999999999998766665 4689999999999999999999999999 568899999998854 6
Q ss_pred -HHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeC
Q 014285 205 -PAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQ 282 (427)
Q Consensus 205 -~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEq 282 (427)
++++.+++++++++||++||+|+|. ++|++++++||+ .++++.|+||||++|++++ ++++++|+++++ .||||
T Consensus 163 ~~e~~~~~a~~~~~~G~~~iKlKv~~--~~d~~~v~avR~a~G~~~~L~vDaN~~w~~~~-~~~~~~l~~~~i--~~iEq 237 (400)
T 3mwc_A 163 RIETLIHQVEESLQEGYRRIKIKIKP--GWDVEPLQETRRAVGDHFPLWTDANSSFELDQ-WETFKAMDAAKC--LFHEQ 237 (400)
T ss_dssp CHHHHHHHHHHHHHHTCSCEEEECBT--TBSHHHHHHHHHHHCTTSCEEEECTTCCCGGG-HHHHHHHGGGCC--SCEES
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCc--chHHHHHHHHHHhcCCCCEEEEeCCCCCCHHH-HHHHHHHHhcCC--CEEeC
Confidence 9999999999999999999999974 789999999999 5799999999999999999 999999999997 49999
Q ss_pred CCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcc
Q 014285 283 PVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDG 361 (427)
Q Consensus 283 P~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s 361 (427)
|++++|++++++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++||
T Consensus 238 P~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~ 313 (400)
T 3mwc_A 238 PLHYEALLDLKELGE----RIETPICLDESLISSRVAEFVAKLGISNIWNIKIQRVGGLLEAIKIYKIATDNGIKLWGGT 313 (400)
T ss_dssp CSCTTCHHHHHHHHH----HSSSCEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECC
T ss_pred CCChhhHHHHHHHHh----hCCCCEEEeCCcCCHHHHHHHHhcCCCCEEEEcchhhCCHHHHHHHHHHHHHcCCEEEecC
Confidence 999999999999986 68999999999999999999999999999999999997 9999999999999999999999
Q ss_pred cCchhHHHHHHHHHHhhcCCccee-ccCCCc-cccc--CCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 362 MIETRLATGFALHLAAGLGCIKYV-NLNTPF-LLSE--DPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 362 ~~es~ig~~a~~hlaaal~~~~~~-e~~~p~-~~~~--~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
++||+|+++|++|+++ ++|+.+. +++.+. ++.+ |++. +.++||++.+|++||||||+|+++|
T Consensus 314 ~~es~i~~aa~~hlaa-~~~~~~~~d~~~~~~~~~~~~d~~~--~~~~~G~i~~p~~PGlGve~d~~~l 379 (400)
T 3mwc_A 314 MPESGLGARFLISLAS-FRGFVFPADVAASEKWYGKGNDLVE--NTMTDGKIYVPDEPGASFDMTLSHL 379 (400)
T ss_dssp SCCCHHHHHHHHHHTT-BTTBCSCBCCCCHHHHHCTTTSSSC--CCEETTEEECCCSBTTTTTCCHHHH
T ss_pred CCCCHHHHHHHHHHHc-CCCCcceeccCchhhhhhcccCeeE--EEEECCEEECCCCCCcCcccCHHHH
Confidence 9999999999999988 8888765 455542 2344 6666 7899999999999999999999865
|
| >1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-68 Score=542.32 Aligned_cols=350 Identities=18% Similarity=0.272 Sum_probs=314.0
Q ss_pred eeeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecC--CCCCcchHH-HHHHHHH-HhhHhcCC
Q 014285 64 WVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTK-ALVKVRE-ACQFLRQS 139 (427)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~--~~~s~~~~~-~~~~~~~-~~~~l~g~ 139 (427)
.|||++++++.+++|++.||.++.++++.++.++|+|+|++|.+||||+.+. |.|+++..+ ....+++ +.|.|+|+
T Consensus 19 ~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~v~V~v~td~G~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~p~l~G~ 98 (386)
T 1wue_A 19 HMNIQSIETYQVRLPLKTPFVTSYGRLEEKAFDLFVITDEQGNQGFGELVAFEQPDYVQETLVTERFIIQQHLIPLLLTE 98 (386)
T ss_dssp CCCEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECCCSSTTSSSCCHHHHHHHHHHTHHHHHTTS
T ss_pred cCEEEEEEEEEEecccCCCccccceEEecCcEEEEEEEECCCCEEEEEeecCCCCcccCCcHHHHHHHHHHHHHHHHcCC
Confidence 3999999999999999999999999999999999999999999999999874 456664433 3334555 78999999
Q ss_pred CCCCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecCC-CHHHHHHHHHHHhhc
Q 014285 140 PPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAV-SPAEASELASKYCKL 218 (427)
Q Consensus 140 ~~~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~-~~~~~~~~~~~~~~~ 218 (427)
++.+++.+|+.|.. +.|. +++++||||||||++||..|+|||+||||.++++|+|++++.. +++++.+++++++++
T Consensus 99 d~~~~~~l~~~l~~-~~g~--~~A~~aid~AlwDl~~k~~g~Pl~~llGg~~~~v~~~~~~g~~~~~~~~~~~a~~~~~~ 175 (386)
T 1wue_A 99 AIEQPQEVSTIFEE-VKGH--WMGKAALETAIWDLYAKRQQKSLTEFFGPTRRKIPVGISLGIQEDLPQLLKQVQLAVEK 175 (386)
T ss_dssp CCCSTHHHHHHGGG-SCSC--HHHHHHHHHHHHHHHHHHTTSBGGGGSSSCCSEEECCEEECCCSCHHHHHHHHHHHHHT
T ss_pred CccCHHHHHHHHHH-ccCc--hHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCeeEeeEEecCCCCHHHHHHHHHHHHHh
Confidence 99999999998865 4454 6789999999999999999999999999988899999988754 699999999999999
Q ss_pred CCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHh
Q 014285 219 GFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNF 298 (427)
Q Consensus 219 Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~ 298 (427)
||+++|+|+|+ ++|++++++||+..|++.|+||||++|++++| ++++.|+++++ .|||||++++|++++++|++
T Consensus 176 G~~~~KiKvg~--~~d~~~v~avr~a~~~~~l~vDaN~~~~~~~a-~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~~- 249 (386)
T 1wue_A 176 GYQRVKLKIRP--GYDVEPVALIRQHFPNLPLMVDANSAYTLADL-PQLQRLDHYQL--AMIEQPFAADDFLDHAQLQR- 249 (386)
T ss_dssp TCSCEEEECBT--TBSHHHHHHHHHHCTTSCEEEECTTCCCGGGH-HHHHGGGGSCC--SCEECCSCTTCSHHHHHHHT-
T ss_pred hhheEEEeeCc--HHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHH-HHHHHHHhCCC--eEEeCCCCcccHHHHHHHHH-
Confidence 99999999985 67999999999977999999999999999999 99999999997 49999999999999999985
Q ss_pred hccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHh
Q 014285 299 ARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377 (427)
Q Consensus 299 ~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaa 377 (427)
++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+++||+|+.++++|++
T Consensus 250 ---~~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~ik~~~~GGit~~~~i~~~A~~~gi~~~~~~~~es~i~~aa~~hla- 325 (386)
T 1wue_A 250 ---ELKTRICLDENIRSLKDCQVALALGSCRSINLKIPRVGGIHEALKIAAFCQENDLLVWLGGMFESGVGRALNLQFA- 325 (386)
T ss_dssp ---TCSSCEEECTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHH-
T ss_pred ---hcCCCEEeCCccCCHHHHHHHHHcCCCCEEEEchhhhCCHHHHHHHHHHHHHCCCeEEECCCcccHHHHHHHHHHH-
Confidence 68999999999999999999999999999999999997 9999999999999999999999999999999999996
Q ss_pred hcCCccee-ccCCCc-ccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 378 GLGCIKYV-NLNTPF-LLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 378 al~~~~~~-e~~~p~-~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+++++.+. +++.+. ++.++++.+++.++||++.+|++||||+++|++++
T Consensus 326 a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 376 (386)
T 1wue_A 326 SQPTFSFPGDISATERYFYEDIITEPFILEQGTMTVPQGLGIGVTLSQTNL 376 (386)
T ss_dssp TSTTCCSCCSCCCGGGTBSCCSBSSCCCEETTEEECCCSSBTCCCBCHHHH
T ss_pred hCCCCCcccccCchhhhhhhccccCCcEEECCEEECCCCCcCCceeCHHHH
Confidence 68887653 444332 24677778888999999999999999999999865
|
| >3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-69 Score=540.88 Aligned_cols=346 Identities=17% Similarity=0.243 Sum_probs=296.8
Q ss_pred eeEEEEEEEEEEeeccccc-cccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHH-HHhhHhcCCCCC
Q 014285 65 VDVQRAEGRELNVALSAPL-SLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVR-EACQFLRQSPPT 142 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~-~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~-~~~~~l~g~~~~ 142 (427)
|||++|+++.+++|++.|| +++.++.+.++.++|+|+||+|++||||+.+.+.+.++ ......++ .+.|.|+|+++.
T Consensus 1 MkI~~i~~~~~~~Pl~~p~~~~a~~~~~~~~~v~V~v~td~G~~G~GE~~~~~~~~~~-~~~~~~i~~~l~p~liG~d~~ 79 (372)
T 3tj4_A 1 MKITAVEPFILHLPLTSESISDSTHSITHWGVVGAKITTSDGIEGYGFTGTHAHLPSD-RLITSCISDCYAPLLLGEDAS 79 (372)
T ss_dssp CBEEEEEEEEEEEECC------------EEEEEEEEEEETTSCEEEEEEEECCCHHHH-HHHHHHHHHTTHHHHTTSBTT
T ss_pred CEEEEEEEEEEEecCCCCccCCCccccCceeEEEEEEEECCCCEEEEeccCccccCcH-HHHHHHHHHHHHHHhCCCChh
Confidence 8999999999999999999 99999999999999999999999999999875421121 11222344 488999999999
Q ss_pred CHHHHHHHHHHHC----CC--ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCc-eeeeeeecC---CCHHHHHHHH
Q 014285 143 TLNFALDEIARIL----PG--SEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNS-LSTAITIPA---VSPAEASELA 212 (427)
Q Consensus 143 ~~~~~~~~l~~~~----~g--~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~-ip~~~~i~~---~~~~~~~~~~ 212 (427)
+++.+|+.|++.. .| ...+++++||||||||++||.+|+|||+||||.+++ +|+|.+++. .+++++.+++
T Consensus 80 ~~~~~~~~l~~~~~~~~~g~~g~~~~A~said~AlwDl~gk~~g~Pv~~llGg~~~~~v~~y~s~~~~~~~~~~~~~~~a 159 (372)
T 3tj4_A 80 DHSRLWTKLARYPSLQWVGRAGITHLALAAVDVALWDIKAKKAGVPLWHYLGGARTAGVEAYNTDIGWLSFTLEDLLAGS 159 (372)
T ss_dssp CHHHHHHHHHTCHHHHTTCSSTHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSCEEEEECTTCCTTSCHHHHHHHH
T ss_pred hHHHHHHHHHHhhHhhcCCcccHHHHHHHHHHHHHHHHhccccCCcHHHHcCCCCCCCeEEEEecCCccCCCHHHHHHHH
Confidence 9999999997632 23 345689999999999999999999999999998655 999997322 3899999999
Q ss_pred HHHhhc-CCcEEEEeccC-CchhhHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCCh
Q 014285 213 SKYCKL-GFSTLKLNVGR-NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW 289 (427)
Q Consensus 213 ~~~~~~-Gf~~iKlKiG~-~~~~d~~~l~~ir~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~ 289 (427)
++++++ ||++||+|+|. ++++|++++++||+. ++++.|+||+|++|++++|+++++.|+++++ .|||||++++|+
T Consensus 160 ~~~~~~~G~~~~K~Kvg~~~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~d~ 237 (372)
T 3tj4_A 160 ARAVEEDGFTRLKIKVGHDDPNIDIARLTAVRERVDSAVRIAIDGNGKWDLPTCQRFCAAAKDLDI--YWFEEPLWYDDV 237 (372)
T ss_dssp HHHHHTTCCCEEEEECCCSSHHHHHHHHHHHHHHSCTTCEEEEECTTCCCHHHHHHHHHHTTTSCE--EEEESCSCTTCH
T ss_pred HHHHHccCCCEEEEcCCCCCHHHHHHHHHHHHHHcCCCCcEEeeCCCCCCHHHHHHHHHHHhhcCC--CEEECCCCchhH
Confidence 999999 99999999994 789999999999995 7999999999999999999999999999987 599999999999
Q ss_pred hhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcc--cCchh
Q 014285 290 SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDG--MIETR 366 (427)
Q Consensus 290 ~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s--~~es~ 366 (427)
+++++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+ +.++
T Consensus 238 ~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~g~~~~~- 312 (372)
T 3tj4_A 238 TSHARLAR----NTSIPIALGEQLYTVDAFRSFIDAGAVAYVQPDVTRLGGITEYIQVADLALAHRLPVVPHAGEMSQV- 312 (372)
T ss_dssp HHHHHHHH----HCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHHTTCCBCCCCTTTTTT-
T ss_pred HHHHHHHh----hcCCCEEeCCCccCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEecCchHHHH-
Confidence 99999986 68999999999999999999999999999999999997 9999999999999999999999 7664
Q ss_pred HHHHHHHHHHhhcCCcceeccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 367 LATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 367 ig~~a~~hlaaal~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
++|++++++|+.+.|++ |+ .++++.+++.++||++.+|++||||+|+|+++|
T Consensus 313 -----~~~l~aa~~~~~~~e~~-~~--~~~~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l 364 (372)
T 3tj4_A 313 -----HVHLSYWHPASTILEYI-PW--IKDHFEEPIHVRDGVYKRPEQPGASTTPLAESF 364 (372)
T ss_dssp -----HHHHHHHCTTBCCEEEC-CS--SGGGBSSCCCEETTEECCCCSSBCSCCBCHHHH
T ss_pred -----HHHHhhhCCCCceeeec-hH--HHHhccCCCceeCCEEECCCCCCCCCcCCHHHH
Confidence 68999999999998877 42 356777888999999999999999999999865
|
| >3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-69 Score=543.47 Aligned_cols=344 Identities=19% Similarity=0.286 Sum_probs=310.2
Q ss_pred eeeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHH-HHHhhHhcCCCCC
Q 014285 64 WVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKV-REACQFLRQSPPT 142 (427)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~-~~~~~~l~g~~~~ 142 (427)
.|||++|+++++++|+++||.++.++.+.++.++|+|+|++|++||||+.+.+. ........+ +.+.|.|+|+++.
T Consensus 27 ~mkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~v~td~G~~G~GE~~~~~~---~~~~~~~~~~~~l~p~liG~d~~ 103 (390)
T 3ugv_A 27 TLTFRKLTARPVLLKLQRPVTARIATIPDWPLILIDIETEEGVPGRAYLEPYVP---KAMKYLVPALHDMSDMLAGQPLA 103 (390)
T ss_dssp CCBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCCEEEEECCSCG---GGHHHHHHHHHHHHHHHTTSBCC
T ss_pred CCEEEEEEEEEEEecCCCCccCcccccccceEEEEEEEECCCCEEEEEeecCCC---chHHHHHHHHHHHHHHHCCCCcc
Confidence 399999999999999999999999999999999999999999999999987542 112222233 5689999999999
Q ss_pred CHHHHHHHHHHHC--CC--ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecC---CCHHHHHHHHHHH
Q 014285 143 TLNFALDEIARIL--PG--SEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPA---VSPAEASELASKY 215 (427)
Q Consensus 143 ~~~~~~~~l~~~~--~g--~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~---~~~~~~~~~~~~~ 215 (427)
++ .+|+.|++.. .| ...+++++|||+|||||+||..|+|||+||||.++++|+|.+++. .+++++.++++++
T Consensus 104 ~~-~~~~~l~~~~~~~g~~g~~~~A~said~ALwDl~gK~~g~Pl~~LLGg~~~~v~~y~s~g~~~~~~~e~~~~~a~~~ 182 (390)
T 3ugv_A 104 PA-EIYDKTRKSLHFVGYAGLSMIAASGVDMAVWDALARAANMPLCTLLGGTPGSVKAYNSNGLWLKSPAEVAAEAVELK 182 (390)
T ss_dssp HH-HHHHHHHHHTGGGCSSTHHHHHHHHHHHHHHHHHHHHTTSBHHHHTTCCCCEEEEEECSCCCSSCHHHHHHHHHHHH
T ss_pred hH-HHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCceEEEEecccccCCCHHHHHHHHHHH
Confidence 99 9999998753 23 234689999999999999999999999999999999999998776 7899999999999
Q ss_pred hhc---CCcEEEEeccC-CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChh
Q 014285 216 CKL---GFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWS 290 (427)
Q Consensus 216 ~~~---Gf~~iKlKiG~-~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~ 290 (427)
+++ ||++||+|+|. ++++|++++++||+ .++++.|+||+|++|++++|++++++|+++++ .|||||++++|++
T Consensus 183 ~~~~~~G~~~iKlKvG~~~~~~d~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEqP~~~~d~~ 260 (390)
T 3ugv_A 183 AEGQGTGFKGLKLRMGRDDPAVDIETAEAVWDAVGRDTALMVDFNQGLDMAEAMHRTRQIDDLGL--EWIEEPVVYDNFD 260 (390)
T ss_dssp HTTCTTCCSEEEEECCCSSHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHTTSCC--SEEECCSCTTCHH
T ss_pred HHhhhCCCcEEEEecCCCCHHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHhhCC--CEEECCCCcccHH
Confidence 999 99999999997 78999999999999 58999999999999999999999999999997 4999999999999
Q ss_pred hHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHH
Q 014285 291 GLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLAT 369 (427)
Q Consensus 291 ~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~ 369 (427)
++++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.+
T Consensus 261 ~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~~~~i~~~A~~~gi~~~~h~~~~----- 331 (390)
T 3ugv_A 261 GYAQLRH----DLKTPLMIGENFYGPREMHQALQAGACDLVMPDFMRIGGVSGWMRAAGVAGAWGIPMSTHLYPE----- 331 (390)
T ss_dssp HHHHHHH----HCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBHHHHTHHHHHHHHHHHHHHHTCCBCCBSCHH-----
T ss_pred HHHHHHH----hcCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEeecCHHH-----
Confidence 9999986 68999999999999999999999999999999999997 9999999999999999999999754
Q ss_pred HHHHHHHhhcCCcceeccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 370 GFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 370 ~a~~hlaaal~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+++|++++++|..++|+.. +.++++.+++.++||++.+|++||||+|+|+++|
T Consensus 332 -a~lhl~aa~p~~~~~e~~~---~~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~l 384 (390)
T 3ugv_A 332 -VGAHVMRVTETAHWLEWQS---WADPILQEPYALSDGDLIVPDKPGLGLDWDEDVV 384 (390)
T ss_dssp -HHHHHHTTCTTBCCEEECC---TTGGGBSSCCCEETTEEECCSSSBTCCCBCHHHH
T ss_pred -HHHHHHHhCCCCceeeccc---hhhhhccCCCeeECCEEECCCCCcCCCCcCHHHH
Confidence 5789999999998887652 3456777888999999999999999999999865
|
| >1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-68 Score=541.98 Aligned_cols=349 Identities=21% Similarity=0.332 Sum_probs=314.1
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecC--CCCCcchHH-HHHHHHH-HhhHhcCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTK-ALVKVRE-ACQFLRQSP 140 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~--~~~s~~~~~-~~~~~~~-~~~~l~g~~ 140 (427)
|||++++++.+++|++.||.++.++++.++.++|+|+|++|.+||||+.+. |.|+++..+ ....+++ +.|.|+|++
T Consensus 20 mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~v~V~v~td~G~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~p~l~G~d 99 (393)
T 1wuf_A 20 MYFQKARLIHAELPLLAPFKTSYGELKSKDFYIIELINEEGIHGYGELEAFPLPDYTEETLSSAILIIKEQLLPLLAQRK 99 (393)
T ss_dssp EECCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECSSSCEEEEEECCCSSTTSSSCCHHHHHHHHHHTTHHHHHHCE
T ss_pred CEEEEEEEEEEeeeccCCeEecceeEecCcEEEEEEEECCCCEEEEEeecCCCCcccCCCHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999999999875 456654433 3334554 789999999
Q ss_pred CCCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecCC-CHHHHHHHHHHHhhcC
Q 014285 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAV-SPAEASELASKYCKLG 219 (427)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~-~~~~~~~~~~~~~~~G 219 (427)
+.+++.+|+.|.. +.|. +++++||||||||++||..|+|||+||||.++++|+|++++.. +++++.+++++++++|
T Consensus 100 ~~~~~~l~~~l~~-~~g~--~~a~~aid~AlwDl~gk~~g~Pl~~lLGg~~~~v~~~~~~g~~~~~e~~~~~a~~~~~~G 176 (393)
T 1wuf_A 100 IRKPEEIQELFSW-IQGN--EMAKAAVELAVWDAFAKMEKRSLAKMIGATKESIKVGVSIGLQQNVETLLQLVNQYVDQG 176 (393)
T ss_dssp ESSTTHHHHHHTT-SCSC--HHHHHHHHHHHHHHHHHHTTSBHHHHTTCCCSEEEBCEEECCCSCHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHH-ccCc--hHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCcceeeEEeCCCCCHHHHHHHHHHHHHHh
Confidence 9999999988864 4443 6789999999999999999999999999988899999988764 6999999999999999
Q ss_pred CcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhh
Q 014285 220 FSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFA 299 (427)
Q Consensus 220 f~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~ 299 (427)
|+++|+|+|. ++|++++++||+..|++.|+||||++|++++| ++++.|+++++ .|||||++++|++++++|++
T Consensus 177 ~~~~KiKvg~--~~d~~~v~avr~a~~~~~l~vDaN~~~~~~~a-~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~~-- 249 (393)
T 1wuf_A 177 YERVKLKIAP--NKDIQFVEAVRKSFPKLSLMADANSAYNREDF-LLLKELDQYDL--EMIEQPFGTKDFVDHAWLQK-- 249 (393)
T ss_dssp CCEEEEECBT--TBSHHHHHHHHTTCTTSEEEEECTTCCCGGGH-HHHHTTGGGTC--SEEECCSCSSCSHHHHHHHT--
T ss_pred hHhheeccCh--HHHHHHHHHHHHHcCCCEEEEECCCCCCHHHH-HHHHHHHhCCC--eEEECCCCCcCHHHHHHHHH--
Confidence 9999999984 67999999999977999999999999999999 99999999987 49999999999999999985
Q ss_pred ccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhh
Q 014285 300 RDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAG 378 (427)
Q Consensus 300 r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaa 378 (427)
++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+++||+|+.++++|++ +
T Consensus 250 --~~~ipIa~dE~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i~~aa~~hla-a 326 (393)
T 1wuf_A 250 --QLKTRICLDENIRSVKDVEQAHSIGSCRAINLKLARVGGMSSALKIAEYCALNEILVWCGGMLEAGVGRAHNIALA-A 326 (393)
T ss_dssp --TCSSEEEECTTCCSHHHHHHHHHHTCCSEEEECTGGGTSHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHH-T
T ss_pred --hCCCCEEECCCcCCHHHHHHHHHhCCCCEEEeChhhhCCHHHHHHHHHHHHHcCCeEEecCCcccHHHHHHHHHHH-h
Confidence 68999999999999999999999999999999999997 9999999999999999999999999999999999997 6
Q ss_pred cCCccee-ccCCCc-ccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 379 LGCIKYV-NLNTPF-LLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 379 l~~~~~~-e~~~p~-~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
++++.+. +++.+. ++.++++.+++.++||++.+|++||||+++|++.+
T Consensus 327 ~~~~~~~~~l~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l 376 (393)
T 1wuf_A 327 RNEFVFPGDISASNRFFAEDIVTPAFELNQGRLKVPTNEGIGVTLDLKVL 376 (393)
T ss_dssp SSSCCSCBSCCCGGGTBSSCSBSSCCCCCSSEEECCCSSBTSCCBCHHHH
T ss_pred CCCCCcccccCchhhhhhhhcccCCcEEECCEEECCCCCcCCCccCHHHH
Confidence 8887664 565543 35677778888999999999999999999998865
|
| >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-68 Score=534.68 Aligned_cols=351 Identities=17% Similarity=0.283 Sum_probs=316.0
Q ss_pred eeEEEEEEEEEEeeccc-cccccce-eEEeeeEEEEEEEEcCCceEEEEeecC-CCCCcchH-HHHHHHHHHhhHhcCCC
Q 014285 65 VDVQRAEGRELNVALSA-PLSLGLS-SVENVENVAIRVELSNGCVGWGEVAVV-PLVTGDQT-KALVKVREACQFLRQSP 140 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~-p~~~a~~-~~~~~~~vlV~v~t~~G~~G~GE~~~~-~~~s~~~~-~~~~~~~~~~~~l~g~~ 140 (427)
|||++++++.+++|++. ||.++.+ +.+.++.++|+|+|++|.+||||+.+. +.|+++.. .....+++++|.|+|++
T Consensus 4 MkI~~i~~~~~~~pl~~~p~~~s~~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~~i~~l~~~l~g~d 83 (371)
T 2ps2_A 4 LKIARIDVFQVDLPYSGGVYYLSAGREYRSFDATIVRITTDTGIEGWGESTPFGSNYIASHPRGVRAGIATMAPSLIGLD 83 (371)
T ss_dssp CCEEEEEEEEEEECBTTSCCCCC-------EEEEEEEEEETTSCEEEEEECCSTTTSSSCCHHHHHHHHHHHHHHHTTSC
T ss_pred CEEEEEEEEEEecccCCCCeeecccceeccCceEEEEEEECCCCEEEEEEecCCcccCCCCHHHHHHHHHHHHHHHCCCC
Confidence 89999999999999999 9999877 578899999999999999999999987 66766433 33445567899999999
Q ss_pred CCCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhhcC
Q 014285 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLG 219 (427)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~G 219 (427)
+.+++.+|+.|.+.+.+. +++++|||+||||++||..|+|||+||||. ++++|+|.+++..+++++.+.+++++++|
T Consensus 84 ~~~~~~~~~~l~~~~~~~--~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~vp~~~~~~~~~~~~~~~~a~~~~~~G 161 (371)
T 2ps2_A 84 PRRVDRINDAMDDALLGH--EDAKTAIDVACWDIFGKSVGLPVCELLGGRTNTRLPLISSIYVGEPEDMRARVAKYRAKG 161 (371)
T ss_dssp TTCHHHHHHHHHHHCSSC--HHHHHHHHHHHHHHHHHHHTCBHHHHTTCCCSSCEEBEEEECSCCHHHHHHHHHHHHTTT
T ss_pred cccHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHhC
Confidence 999999999998765553 579999999999999999999999999995 78999999998889999999999999999
Q ss_pred CcEEEEeccCCchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHh-hhCCCCCceEeCCCCCCChhhHHHHHH
Q 014285 220 FSTLKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKL-NDMGVIPVLFEQPVHRDDWSGLHDVSN 297 (427)
Q Consensus 220 f~~iKlKiG~~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L-~~~~l~~~~iEqP~~~~d~~~~~~L~~ 297 (427)
|+++|+|+|.+++.|++++++||+ .++++.|+||+|++|++++|+++++.| +++++ |||||++ |++++++|++
T Consensus 162 f~~iKik~g~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~~i---~iE~P~~--~~~~~~~l~~ 236 (371)
T 2ps2_A 162 YKGQSVKISGEPVTDAKRITAALANQQPDEFFIVDANGKLSVETALRLLRLLPHGLDF---ALEAPCA--TWRECISLRR 236 (371)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHTTTCCTTCEEEEECTTBCCHHHHHHHHHHSCTTCCC---EEECCBS--SHHHHHHHHT
T ss_pred hheEEeecCCCHHHHHHHHHHHHHhcCCCCEEEEECCCCcCHHHHHHHHHHHHhhcCC---cCcCCcC--CHHHHHHHHh
Confidence 999999999999999999999999 578999999999999999999999999 99874 9999998 8999999985
Q ss_pred hhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHH
Q 014285 298 FARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLA 376 (427)
Q Consensus 298 ~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla 376 (427)
++++||++||++.+..+++++++.+++|++++|++++| ++++++++++|+++|+++++|+++||+|++++++|++
T Consensus 237 ----~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~hla 312 (371)
T 2ps2_A 237 ----KTDIPIIYDELATNEMSIVKILADDAAEGIDLKISKAGGLTRGRRQRDICLAAGYSVSVQETCGSDIAFAAIVHLA 312 (371)
T ss_dssp ----TCCSCEEESTTCCSHHHHHHHHHHTCCSEEEEEHHHHTSHHHHHHHHHHHHHHTCEEEEECSSCCHHHHHHHHHHH
T ss_pred ----hCCCCEEeCCCcCCHHHHHHHHHhCCCCEEEechhhcCCHHHHHHHHHHHHHcCCeEEecCCCcCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999997 9999999999999999999999999999999999999
Q ss_pred hhcCCcce-eccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 377 AGLGCIKY-VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 377 aal~~~~~-~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
++++|..+ .+++.+.++.++++.+++.++||++.+|++||||+++|+++|
T Consensus 313 a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 363 (371)
T 2ps2_A 313 QTIPERSLRCILECRDMVTVKTADGAFDIQDGFATAPTTPGLGIMPRLDVL 363 (371)
T ss_dssp TTSCTTTEEEECCGGGGBSCCCEECCCCCBTTEECCCCSSBTSCEECHHHH
T ss_pred HhCCCcccccccccchhhhccccCCCceEECCEEECCCCCCCCCeeCHHHH
Confidence 99998764 466666556677777788899999999999999999999875
|
| >4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-68 Score=538.84 Aligned_cols=338 Identities=21% Similarity=0.313 Sum_probs=297.8
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHH--HHHHHHhhHhcCCCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL--VKVREACQFLRQSPPT 142 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~--~~~~~~~~~l~g~~~~ 142 (427)
|||++|+++.+++| ||.+ ++ ++.++|||+||+|++||||+. +. +..+.. ..++.+.|.|+|+++.
T Consensus 3 MkI~~i~~~~~~~p---~~~~----~~-~~~~~V~v~td~G~~G~GE~~--~~---~~~~~~~~~~~~~l~p~liG~d~~ 69 (393)
T 4dwd_A 3 LKIAKVEALSVAMG---DGTG----WM-PTSAFVRITAEDGTVGWGEAS--PM---LGGIASLGVVARDIAPFLEGQEVL 69 (393)
T ss_dssp CBEEEEEEEEEECC---C----------CEEEEEEEEETTSCEEEEEEC--CG---GGGHHHHHHHHHHTHHHHTTSBGG
T ss_pred CEEEEEEEEEEcCC---Cccc----cc-ceEEEEEEEECCCCEEEEEcc--Cc---HHHHHHHHHHHHHHHHHHCCCCcc
Confidence 89999999999998 6554 45 889999999999999999997 22 222222 1245689999999999
Q ss_pred CHHHHHHHHHHHCC--C--ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeee--c-CCCHHHHHHHH-H
Q 014285 143 TLNFALDEIARILP--G--SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITI--P-AVSPAEASELA-S 213 (427)
Q Consensus 143 ~~~~~~~~l~~~~~--g--~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i--~-~~~~~~~~~~~-~ 213 (427)
+++.+|+.|++... | ....++++|||||||||+||.+|+|||+||||. ++++|+|.++ + ..+++++.+++ +
T Consensus 70 ~~e~~~~~l~~~~~~~g~~g~~~~A~said~ALwDl~gK~~g~Pv~~LLGg~~r~~v~~y~s~~g~~~~~~e~~~~~a~~ 149 (393)
T 4dwd_A 70 DHAVLLDRMMHRLVKLGPEGIATAALAACDIALWDLKGKLLGQPIYKLLGGAWRTRLPCYSSIGGNAARSVDEVVREVAR 149 (393)
T ss_dssp GHHHHHHHHHHHTGGGCCTTHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSEEEEEEEECCCSSSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCceeeEEecCccCCCCHHHHHHHHHH
Confidence 99999999987532 2 234589999999999999999999999999999 8999999996 2 46899999999 9
Q ss_pred HHhhcCCcEEEEeccC-------CchhhHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCC
Q 014285 214 KYCKLGFSTLKLNVGR-------NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVH 285 (427)
Q Consensus 214 ~~~~~Gf~~iKlKiG~-------~~~~d~~~l~~ir~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~ 285 (427)
+++++||++||+|+|. ++++|++++++||+. ++++.|+||+|++|++++|+++++.|+++++ .|||||++
T Consensus 150 ~~~~~G~~~~KlKvG~~~~~~~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i--~~iEqP~~ 227 (393)
T 4dwd_A 150 RVEAEQPAAVKIRWDGDRTRCDVDIPGDIAKARAVRELLGPDAVIGFDANNGYSVGGAIRVGRALEDLGY--SWFEEPVQ 227 (393)
T ss_dssp HHHHHCCSEEEEECCCCTTCCSCCHHHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHHHHTTC--SEEECCSC
T ss_pred HHHHcCCCEEEEccCCCCcccccCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhhCC--CEEECCCC
Confidence 9999999999999997 789999999999995 8999999999999999999999999999997 49999999
Q ss_pred CCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCc
Q 014285 286 RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIE 364 (427)
Q Consensus 286 ~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~e 364 (427)
++|++++++|++ ++++||++||++.+..+++++++.+ +|++|+|++++| ++++++++++|+++|+++++|++ +
T Consensus 228 ~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~-~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~~-~ 301 (393)
T 4dwd_A 228 HYHVGAMGEVAQ----RLDITVSAGEQTYTLQALKDLILSG-VRMVQPDIVKMGGITGMMQCAALAHAHGVEFVPHQT-Q 301 (393)
T ss_dssp TTCHHHHHHHHH----HCSSEEEBCTTCCSHHHHHHHHHHT-CCEECCCTTTTTHHHHHHHHHHHHHHHTCEECCCCC-C
T ss_pred cccHHHHHHHHh----hCCCCEEecCCcCCHHHHHHHHHcC-CCEEEeCccccCCHHHHHHHHHHHHHcCCEEeecCC-C
Confidence 999999999986 6899999999999999999999999 999999999997 99999999999999999999999 9
Q ss_pred hhHHHHHHHHHHhhcCCc----ceeccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 365 TRLATGFALHLAAGLGCI----KYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 365 s~ig~~a~~hlaaal~~~----~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
|+|+++|++|++++++|+ .++|. +....+++.+++.++||++.+|++||||+|+|+++|
T Consensus 302 ~~i~~aa~~hlaaa~p~~~~~~~~~e~---~~~~~~~~~~~~~~~~G~i~vp~~PGlGve~d~~~l 364 (393)
T 4dwd_A 302 PGVGHFANIHVLSTLMHMTKPVELADR---WDRGRPVFRNPAEPVDGHFALGDAPGLGIVVDEDEL 364 (393)
T ss_dssp SSHHHHHHHHHHHTCTTCCSCEEECTT---GGGGTTTBSSCCCCBTTEEECCCCSBTCCCBCHHHH
T ss_pred cHHHHHHHHHHHHhCCCcccccceeEe---ecCcccccCCCceeECCEEECCCCCcCCCccCHHHH
Confidence 999999999999999998 44452 222236777888899999999999999999999865
|
| >2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-67 Score=533.29 Aligned_cols=349 Identities=22% Similarity=0.308 Sum_probs=316.4
Q ss_pred eeEEEEEEEEEEeecccccccccee--EEeeeEEEEEEEEcCCceEEEEeecC-CCCCcchH-HHHHHHHHHhhHhcCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSS--VENVENVAIRVELSNGCVGWGEVAVV-PLVTGDQT-KALVKVREACQFLRQSP 140 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~--~~~~~~vlV~v~t~~G~~G~GE~~~~-~~~s~~~~-~~~~~~~~~~~~l~g~~ 140 (427)
|||++++++.+++|++.||.++.++ ++.++.++|+|+|++|.+||||+.+. +.|+++.. .....++.++|.|+|++
T Consensus 3 mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~~l~~l~~~l~g~d 82 (378)
T 2qdd_A 3 LRITRLTVFHLDLPLAKPYWLSGGRLKFDRLDSTYLRIDTDEGVTGWGEGCPWGHSYLPAHGPGLRAGIATLAPHLLGLD 82 (378)
T ss_dssp CCEEEEEEEEEEEEEEEEEECCC--CEEEEEEEEEEEEEETTSCEEEEEECCSTTTSSSCCHHHHHHHHHHHHHHHTTCC
T ss_pred CEEEEEEEEEEeccccCceecccCcccccccceEEEEEEECCCCEEEEEEecCCCCcCCCCHHHHHHHHHHHHHHHCCCC
Confidence 8999999999999999999999998 88999999999999999999999987 77776433 34445567899999999
Q ss_pred CCCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhhcC
Q 014285 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLG 219 (427)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~G 219 (427)
+.+++.+|+.|...+.| .+++++||||||||++||..|+|||+||||. ++++|+|++++..+++++.+.+++++++|
T Consensus 83 ~~~~~~~~~~l~~~~~g--~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~v~~~~~~~~~~~e~~~~~a~~~~~~G 160 (378)
T 2qdd_A 83 PRSLDHVNRVMDLQLPG--HSYVKSPIDMACWDILGQVAGLPLWQLLGGEAATPVPINSSISTGTPDQMLGLIAEAAAQG 160 (378)
T ss_dssp TTCHHHHHHHHHHHSCS--CHHHHHHHHHHHHHHHHHHHTCBHHHHTTCSSCCCEEBEEEECSCCHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHhhcc--chHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCCCceEEEecCCCHHHHHHHHHHHHHHh
Confidence 99999999999655655 4689999999999999999999999999997 78999999988889999999999999999
Q ss_pred CcEEEEeccC-CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHH
Q 014285 220 FSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSN 297 (427)
Q Consensus 220 f~~iKlKiG~-~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~ 297 (427)
|+++|+|+|. +++.|++++++||+ .++++.|++|+|++|++++|+++++.|+ ++ + |||||++ |++++++|++
T Consensus 161 f~~iKik~g~~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~-~~--i-~iEqP~~--d~~~~~~l~~ 234 (378)
T 2qdd_A 161 YRTHSAKIGGSDPAQDIARIEAISAGLPDGHRVTFDVNRAWTPAIAVEVLNSVR-AR--D-WIEQPCQ--TLDQCAHVAR 234 (378)
T ss_dssp CCEEEEECCSSCHHHHHHHHHHHHHSCCTTCEEEEECTTCCCHHHHHHHHTSCC-CC--C-EEECCSS--SHHHHHHHHT
T ss_pred hhheeecCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHhC-CC--c-EEEcCCC--CHHHHHHHHH
Confidence 9999999997 88999999999999 5789999999999999999999999998 76 4 9999998 8999999985
Q ss_pred hhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHH
Q 014285 298 FARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLA 376 (427)
Q Consensus 298 ~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla 376 (427)
++++||++||++.+..+++++++.+++|++++|++++| ++++++++++|+++|+++++||++||+||+++++|++
T Consensus 235 ----~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~hla 310 (378)
T 2qdd_A 235 ----RVANPIMLDECLHEFSDHLAAWSRGACEGVKIKPNRVGGLTRARQIRDFGVSVGWQMHIEDVGGTALADTAALHLA 310 (378)
T ss_dssp ----TCCSCEEECTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEEECCSSCCHHHHHHHHHHH
T ss_pred ----hCCCCEEECCCcCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHcCCeEEecCCCCcHHHHHHHHHHH
Confidence 68999999999999999999999999999999999997 9999999999999999999999999999999999999
Q ss_pred hhcCCc--ce-eccCCCcccccCCCCC-ceeeeCcEEecCCCCCcccccCCCcCC
Q 014285 377 AGLGCI--KY-VNLNTPFLLSEDPFVG-GCEVSGAIYNFTNARGQGGFLKWTIVS 427 (427)
Q Consensus 377 aal~~~--~~-~e~~~p~~~~~~~~~~-~~~~~~G~i~~p~~pGlGve~d~~~v~ 427 (427)
++++|. .| .++ +| ++.++++.+ ++.++||++.+|++||||+++|++++.
T Consensus 311 aa~~~~~~~~~~d~-~~-~~~~d~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~ 363 (378)
T 2qdd_A 311 ASTPEANRLASWLG-HA-HLADDPIPGQGARNRDGLATPPSAPGLGVIPDPEALG 363 (378)
T ss_dssp HTSCTTTBCCBCCG-GG-GBSCCSSTTCSCCCBTTEECCCCSSBTCCCCCGGGSC
T ss_pred HcCCCcceeccccc-cc-hhhhccccCCCceEECCEEECCCCCcCCCccCHHHHh
Confidence 999984 33 355 45 346788888 889999999999999999999999863
|
| >3vdg_A Probable glucarate dehydratase; enolase, magnesium binding site, lyase; 1.90A {Mycobacterium smegmatis str} PDB: 3vfc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-68 Score=543.31 Aligned_cols=345 Identities=19% Similarity=0.268 Sum_probs=303.2
Q ss_pred eeeEEEEEEEEEEeeccccccccceeEEe-eeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCC
Q 014285 64 WVDVQRAEGRELNVALSAPLSLGLSSVEN-VENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPT 142 (427)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~a~~~~~~-~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~ 142 (427)
.|||++|+++++++| ..|+.++.+.... ...++|+|+||+|++||||+.. .+. ....++.+.|.|+|+++.
T Consensus 27 ~mkIt~i~~~~v~~p-~~p~~~~~g~~~~~~~~~~V~v~td~G~~G~GE~~g-----~~~--~~~~i~~l~p~LiG~d~~ 98 (445)
T 3vdg_A 27 RIRITGARVTPVAFA-DPPLLNTVGVHQPYALRAVIQLDTDAGLTGLGETYA-----DTV--HLERLQAAAHAIVGRSVF 98 (445)
T ss_dssp CCBEEEEEEEEEEEE-CCCBEETTEECCSEEEEEEEEEEETTSCEEEEEECC-----CHH--HHHHHHHHHHHHTTCBTT
T ss_pred CCEEEEEEEEEEecC-CccccccccccccceeEEEEEEEECCCCeEEEeCCC-----hHH--HHHHHHHHHHHhCCCChh
Confidence 499999999999999 8899998876543 5679999999999999999952 121 223356789999999999
Q ss_pred CHHHHHHHHHHHCC--------CC--------hhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeee-----
Q 014285 143 TLNFALDEIARILP--------GS--------EFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITI----- 200 (427)
Q Consensus 143 ~~~~~~~~l~~~~~--------g~--------~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i----- 200 (427)
+++.+|+.|++.+. |. ...++++|||+|||||+||.+|+|||+||||. +++||+|.++
T Consensus 99 ~ie~i~~~l~~~~~~~~~~~~~g~~G~~~~~~~~~~A~sAiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~~a~~~~~~~ 178 (445)
T 3vdg_A 99 STNVIRALISDALGGDRTGDGSGLAGMITSASVVDRVFSPFEVACLDVQGQVTGRPVSDLLGGAVRDAVPFSAYLFYKWA 178 (445)
T ss_dssp CHHHHHHHHHHHHTSCCCSCCTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHTCBGGGGTTCCSSSEEEBCEEEECBCS
T ss_pred hHHHHHHHHHHhhhcccccccccccCccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeEEEeeeeccccc
Confidence 99999999987632 11 34579999999999999999999999999997 7899996432
Q ss_pred -----------cCCCHHHHHHHHHHHhhc-CCcEEEEeccC-CchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHH
Q 014285 201 -----------PAVSPAEASELASKYCKL-GFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVL 267 (427)
Q Consensus 201 -----------~~~~~~~~~~~~~~~~~~-Gf~~iKlKiG~-~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l 267 (427)
...+++++.+++++++++ ||++||+|+|. ++++|++++++||+..|++.|+||||++|++++|++++
T Consensus 179 ~~~g~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~~~~~Di~~v~avRea~~d~~L~vDaN~~w~~~~Ai~~~ 258 (445)
T 3vdg_A 179 AHPGAEPDGWGAALDPDGIVAQARRMIDEYGFSAIKLKGGVFAPEEEMAAVEALRAAFPDHPLRLDPNAAWTPQTSVKVA 258 (445)
T ss_dssp SSTTSCCCSSCCBCSHHHHHHHHHHHHHHHCCSSEEEECSSSCHHHHHHHHHHHHHHCTTSCEEEECTTCSCHHHHHHHH
T ss_pred ccCCccccccccCCCHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHH
Confidence 126899999999998875 99999999996 78999999999999669999999999999999999999
Q ss_pred HHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHH
Q 014285 268 GKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQI 346 (427)
Q Consensus 268 ~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~ 346 (427)
++|+++ + .|||||++ +++++++|++ ++++|||+||++.+..+++++++.+++|++|+|++++| +++++++
T Consensus 259 ~~L~~~-l--~~iEeP~~--~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~a~div~~d~~~~GGitea~ki 329 (445)
T 3vdg_A 259 AGLEGV-L--EYLEDPTP--GLDGMAEVAA----QAPMPLATNMCVVAFDQLPAAVAKNSVQVVLSDHHYWGGLQRSRLL 329 (445)
T ss_dssp HHTTTT-C--SEEECCSS--SHHHHHHHHH----HCSSCEEESSSCCSGGGHHHHHHHTCCSEEEECHHHHTSHHHHHHH
T ss_pred HHHhhH-H--HeeeCCCC--CHHHHHHHHh----cCCCCEEcCCcCCCHHHHHHHHHcCCCCEEeeCcceeCCHHHHHHH
Confidence 999998 7 59999996 7999999986 68999999999999999999999999999999999997 9999999
Q ss_pred HHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCccee-ccCCCcccccCCC-CCceeeeCcEEecCCCCCcccccCCC
Q 014285 347 IKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYV-NLNTPFLLSEDPF-VGGCEVSGAIYNFTNARGQGGFLKWT 424 (427)
Q Consensus 347 ~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~-e~~~p~~~~~~~~-~~~~~~~~G~i~~p~~pGlGve~d~~ 424 (427)
+++|+++|+++++|++.|++|+++|++|++++++|..+. +.+.|+.. ++.+ .+++.++||++.+|++||||||+|++
T Consensus 330 a~lA~~~gv~v~~h~~~e~~i~~aa~~hlaaa~p~~~~~~d~~~~~~~-~d~~~~~~~~~~~G~i~~p~~PGLGveld~~ 408 (445)
T 3vdg_A 330 AGICDTFGLGLSMHSNSHLGISLAAMVHLAAATPNLTYACDTHWPWRH-EDVVAPGALNFCDGEVQVPATPGLGVEIDED 408 (445)
T ss_dssp HHHHHHHTCEEEECCCSCCHHHHHHHHHHHHTCTTCCSCBCCCGGGCC-CCSBCSSSSCEETTEEECCCSSBTSCCBCHH
T ss_pred HHHHHHcCCEEEEeCCcchHHHHHHHHHHHHhCCCcceeeccccchhh-cccccCCCceEECCEEECCCCCcCCCcCCHH
Confidence 999999999999999999999999999999999998765 44446544 3444 56889999999999999999999998
Q ss_pred cC
Q 014285 425 IV 426 (427)
Q Consensus 425 ~v 426 (427)
+|
T Consensus 409 ~l 410 (445)
T 3vdg_A 409 AL 410 (445)
T ss_dssp HH
T ss_pred HH
Confidence 75
|
| >4h83_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, enzyme function initiative; 2.09A {Marine actinobacterium PHSC20C1} PDB: 3no1_A 3msy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-68 Score=539.86 Aligned_cols=349 Identities=19% Similarity=0.218 Sum_probs=293.0
Q ss_pred ceeeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHH-HHHhhHhcCCCC
Q 014285 63 FWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKV-REACQFLRQSPP 141 (427)
Q Consensus 63 ~~~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~-~~~~~~l~g~~~ 141 (427)
..|||++|+++++++||++||+++.++++.++.++|||+||+|++||||+.+... +. ......+ +.+.|.|+|+++
T Consensus 18 ~~MkIt~Ie~~~~~~Pl~~p~~~s~g~~~~~~~vlV~i~td~G~~G~Ge~~~~~~-~~--~~~~~~i~~~lap~LiG~dp 94 (388)
T 4h83_A 18 HGLTITRIETIPMVAPLAREFRGSHYHMTHRATIVTRVHTDAGIIGEAYTGDEHE-TM--FDIDRIIHEELAPTLIGQDA 94 (388)
T ss_dssp --CBEEEEEEEEEEEEC----------CCEEEEEEEEEEETTSCEEEEEECCCCT-TH--HHHHHHHHHTTHHHHTTSBT
T ss_pred CCCEEEEEEEEEEEeeccCCEECCCEEEEEEEEEEEEEEECCCCEEEEEecCCcc-cH--HHHHHHHHHHHHHHHcCCCh
Confidence 3599999999999999999999999999999999999999999999999975421 11 1222233 347899999999
Q ss_pred CCHHHHHHHHHHHCC----C-ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecC--CCHHHHHHHHHH
Q 014285 142 TTLNFALDEIARILP----G-SEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPA--VSPAEASELASK 214 (427)
Q Consensus 142 ~~~~~~~~~l~~~~~----g-~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~--~~~~~~~~~~~~ 214 (427)
.+++.+|+.|++... + ...++|++||||||||++||..|+|||+||||.++++|+|.+... .+++++.+.+++
T Consensus 95 ~~ie~l~~~~~~~~~~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pl~~LLGg~~~~~~~y~~~~~~~~~~~~~~~~~~~ 174 (388)
T 4h83_A 95 MAIERLWDSGYKVTFDILRDRRLGLVALAAVNTAIWDAVGKALKMPLWKLWGGYRNELPMIAIGGYYGEPLGSIADEMHN 174 (388)
T ss_dssp TCHHHHHHHHGGGGCCTTSCHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHTTCSCSEEEEEEEECCTTCTTCSHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHcCCChhhhcCCCcCceEEEeeccccCCCHHHHHHHHHH
Confidence 999999999986421 1 234678999999999999999999999999999999999887543 245778888999
Q ss_pred HhhcCCcEEEEecc-CCchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCC-CChhh
Q 014285 215 YCKLGFSTLKLNVG-RNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHR-DDWSG 291 (427)
Q Consensus 215 ~~~~Gf~~iKlKiG-~~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~-~d~~~ 291 (427)
++++||+++|+|+| .++++|++++++||+ +++++.||||||++|++++|+++++.|+++++ .|||||+++ +|+++
T Consensus 175 ~~~~G~~~~Kikvg~~~~~~d~~~v~avR~~~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~--~~iEeP~~~~~d~~~ 252 (388)
T 4h83_A 175 YQELGLAGVKFKVGGLSAAEDAARITAAREAAGDDFIICIDANQGYKPAVAVDLSRRIADLNI--RWFEEPVEWHNDKRS 252 (388)
T ss_dssp HHHHTBSEEEEECSSSCHHHHHHHHHHHHHHHCSSSEEEEECTTCBCHHHHHHHHHHTTTSCC--CCEESCBCSTTHHHH
T ss_pred HHHcCCceEeecCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCcCCCHHHHHHHHHHhhhcCc--ceeecCcccccchHH
Confidence 99999999999996 489999999999999 58999999999999999999999999999997 499999986 56889
Q ss_pred HHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHH
Q 014285 292 LHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATG 370 (427)
Q Consensus 292 ~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~ 370 (427)
+++|++ ++++|||+||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++.+|+ ++ +
T Consensus 253 ~~~l~~----~~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~kia~~A~~~gv~v~~h~--~~----~ 322 (388)
T 4h83_A 253 MRDVRY----QGSVPVCAGQTEFSASGCRDLMETGAIDVCNFDSSWSGGPTAWLRTAAIATSYDVQMGHHE--EP----Q 322 (388)
T ss_dssp HHHHHH----HSSSCEEECTTCSSHHHHHHHHHHTCCSEECCCGGGTTCHHHHHHHHHHHHHTTCEECCCS--CH----H
T ss_pred HHHHHh----hcCCCccCCccccChHhHHHHHHcCCCCeEeecceeCCCHHHHHHHHHHHHHCCCEEEecC--HH----H
Confidence 999986 78999999999999999999999999999999999997 9999999999999999887765 44 4
Q ss_pred HHHHHHhhcCCcceeccCCCc--ccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 371 FALHLAAGLGCIKYVNLNTPF--LLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 371 a~~hlaaal~~~~~~e~~~p~--~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+++|++++++|+.+.|...+. .+..+++.+++.++||++.+|++||||||+|+|+|
T Consensus 323 ~~~h~~aa~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGLGve~d~d~l 380 (388)
T 4h83_A 323 VSTHLLASQPHGTIAECFHPDRDPFWWNMITNRPKLNNGTLTLSDRPGLGWDLNWDYI 380 (388)
T ss_dssp HHHHHHHHSTTBCCEEEECTTTCHHHHHSBTTCCCCBTBEEECCSCSBTCCCBCHHHH
T ss_pred HHHHHHHHhhcCcceeecCcccchhhhhccCCCCeeECCEEECCCCCCCCeeeCHHHH
Confidence 578999999998887754332 23456778888999999999999999999999876
|
| >3vc5_A Mandelate racemase/muconate lactonizing protein; dehydratase, magnesium binding, enzyme function initiative, enolase, isomerase; 1.50A {Thermobispora bispora} PDB: 3vc6_A 4dhg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-67 Score=542.41 Aligned_cols=345 Identities=19% Similarity=0.252 Sum_probs=304.5
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEe-eeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVEN-VENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTT 143 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~-~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~~ 143 (427)
|||++|+++++++| ..|+.++.+.... ...++|+|+||+|++||||+... + .....++.+.|.|+|+++.+
T Consensus 23 mkI~~i~~~~v~~P-~~~~~~~~g~~~~~~~~~~V~v~td~G~~G~GE~~g~-----~--~v~~~i~~l~p~LiG~d~~~ 94 (441)
T 3vc5_A 23 MLIREVRVTPVAFR-DPPLLNAAGVHQPWALRTIVEVVTDEGITGLGETYGD-----L--AHLEQVRAAAARLPGLDVYA 94 (441)
T ss_dssp CBEEEEEEEEEEEE-CCCBEETTEECCSEEEEEEEEEEETTCCEEEEEEECC-----H--HHHHHHHHHHHTCTTSBTTC
T ss_pred cEEEEEEEEEEecC-CcccccccCccccceeEEEEEEEECCCCEEEEeCCCh-----H--HHHHHHHHHHHHhCCCChhH
Confidence 89999999999999 8999999876543 56799999999999999999631 1 12233567899999999999
Q ss_pred HHHHHHHHHHHCC--------CC--------hhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeee------
Q 014285 144 LNFALDEIARILP--------GS--------EFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITI------ 200 (427)
Q Consensus 144 ~~~~~~~l~~~~~--------g~--------~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i------ 200 (427)
++.+|+.|++.+. |. ...++++|||+|||||+||.+|+|||+||||. +++||+|.++
T Consensus 95 ~e~i~~~l~~~~~~~~~~~~~g~~G~~~~~~~~~~A~sAID~ALwDl~gK~~g~Pv~~LLGG~~rd~v~~~a~~~~~~~~ 174 (441)
T 3vc5_A 95 LHRIYRRVADVVGANIVTDMHGLTGSSSRVKTVDRVFAAFEVACLDIQGKAAGRPVADLLGGKVRDAVPYSAYLFYKWAG 174 (441)
T ss_dssp HHHHHHHHHHHHTTCCCCCSSCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSSSEEEBCEEEECBCSB
T ss_pred HHHHHHHHHHhhhccccccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeEEEEEeecccccc
Confidence 9999999987532 11 23479999999999999999999999999997 7899996432
Q ss_pred ----------cCCCHHHHHHHHHHHhh-cCCcEEEEeccC-CchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHH
Q 014285 201 ----------PAVSPAEASELASKYCK-LGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLG 268 (427)
Q Consensus 201 ----------~~~~~~~~~~~~~~~~~-~Gf~~iKlKiG~-~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~ 268 (427)
...+++++.++++++++ +||++||+|+|. ++++|++++++||+..|++.|+||||++|++++|+++++
T Consensus 175 ~~g~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~~~~~Di~rv~avRea~pd~~L~vDaN~~w~~~~Ai~~~~ 254 (441)
T 3vc5_A 175 HPGKPEDRFGPALDPDGIVAQARLLIGEYGFRSIKLKGGVFPPEQEAEAIQALRDAFPGLPLRLDPNAAWTVETSIRVGR 254 (441)
T ss_dssp CTTSCBCTTCCBCSHHHHHHHHHHHHHHHCCSSEEEECSSSCHHHHHHHHHHHHHHSTTCCEEEECTTCSCHHHHHHHHH
T ss_pred CCCccccccccCCCHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHHHHHHHhCCCCcEeccCCCCCCHHHHHHHHH
Confidence 12689999999999887 499999999996 789999999999996699999999999999999999999
Q ss_pred HhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHH
Q 014285 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQII 347 (427)
Q Consensus 269 ~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~ 347 (427)
+|+++ + .|||||++ ++++|++|++ ++++|||+||++.+..+++++++.+++|++|+|++++| ++++++++
T Consensus 255 ~L~~~-l--~~iEeP~~--~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~a~dii~~d~~~~GGitea~kia 325 (441)
T 3vc5_A 255 ALDGV-L--EYLEDPTP--GIDGMARVAA----EVPMPLATNMCVVTPEHLPAAVERRPIGVLLIDHHYWGGLVRSAHIA 325 (441)
T ss_dssp HTTTT-C--SEEECCSS--SHHHHHHHHT----TSSSCEEESSSCCSGGGHHHHHHHCCCSEEEECHHHHTSHHHHHHHH
T ss_pred HHHHH-H--HHhhccCC--CHHHHHHHHh----cCCCCEEeCCCCCCHHHHHHHHHhCCCCEEeechhhcCCHHHHHHHH
Confidence 99998 7 59999996 7999999985 78999999999999999999999999999999999997 99999999
Q ss_pred HHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCccee-ccCCCcccccCCC-CCceeeeCcEEecCCCCCcccccCCCc
Q 014285 348 KATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYV-NLNTPFLLSEDPF-VGGCEVSGAIYNFTNARGQGGFLKWTI 425 (427)
Q Consensus 348 ~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~-e~~~p~~~~~~~~-~~~~~~~~G~i~~p~~pGlGve~d~~~ 425 (427)
++|+++|+++++|++.|++|+++|++|++++++|..+. +++.|+...+|++ .+++.++||++.+|++||||||+|+++
T Consensus 326 ~lA~~~gv~v~~h~~~e~~i~~aa~~hlaaa~p~~~~~~d~~~~~~~~~d~~~~~~~~~~~G~i~~p~~PGLGveld~~~ 405 (441)
T 3vc5_A 326 TLCATFGIELSMHSNSHLGISLAAMTHLAAATPAITHACDTHTPWQDGQDVVAPGALRFVDGAVPVPDGPGLGVELDRDA 405 (441)
T ss_dssp HHHHHTTCEEEECCCSCCHHHHHHHHHHHHTCTTBCSCBCCCGGGGTTCCSBCTTSCCCBTTEEECCCSSBTSCCBCHHH
T ss_pred HHHHHcCCEEEecCCcccHHHHHHHHHHHHhCCCcceeecccchhhcccccccCCCceEECCEEECCCCCCCCceECHHH
Confidence 99999999999999999999999999999999998775 5555665545665 457899999999999999999999987
Q ss_pred C
Q 014285 426 V 426 (427)
Q Consensus 426 v 426 (427)
|
T Consensus 406 l 406 (441)
T 3vc5_A 406 L 406 (441)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >4h1z_A Enolase Q92ZS5; dehydratase, magnesium binding site, enzyme function initiat isomerase; 2.01A {Sinorhizobium meliloti} PDB: 2ppg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-68 Score=544.50 Aligned_cols=351 Identities=19% Similarity=0.282 Sum_probs=299.8
Q ss_pred eeEEEEEEEEEEeecccccccccee-----------------E--EeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHH
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSS-----------------V--ENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKA 125 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~-----------------~--~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~ 125 (427)
.||++|+++.+.+|+.+|+..+.+. . .....++|||+||+|++||||+.+.. ++. ..
T Consensus 26 ~~I~~i~~~~v~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~r~VlVri~td~G~~G~GE~~~~~--~~~--~~ 101 (412)
T 4h1z_A 26 DRVKKIESFTLTLPRETPYLGKPRPGEEPNGRGYLVRKANRTVYPTFDRSVLVRIETENGAVGWGETYGLV--APR--AT 101 (412)
T ss_dssp CCEEEEEEEEEECC------------CCCCTTSEEECTTTCCEEESSCEEEEEEEEETTCCEEEEEEECSS--CHH--HH
T ss_pred ceeeEEEEEEEecccCCccccccccccccccccceeeccCcccCCCCCCcEEEEEEECCCCEEEEecCCCC--CHH--HH
Confidence 4899999999999999998643221 1 12356999999999999999997542 121 12
Q ss_pred HHHHHH-HhhHhcCCCCCCHHHHHHHHHHHC-----CCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeee
Q 014285 126 LVKVRE-ACQFLRQSPPTTLNFALDEIARIL-----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAI 198 (427)
Q Consensus 126 ~~~~~~-~~~~l~g~~~~~~~~~~~~l~~~~-----~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~ 198 (427)
...+++ +.|.|+|++|.+++.+|+.|++.. .+....+|++|||+|||||+||..|+|||+||||. ++++|+|.
T Consensus 102 ~~~i~~~lap~liG~dp~~~~~i~~~l~~~~~~~~~~~g~~~~A~saiD~ALwDl~gK~~g~Pl~~LLGG~~~~~v~~y~ 181 (412)
T 4h1z_A 102 MEIIDDLLADFTIGRDPFDAAAIHDDLYDLMRVRGYTGGFYVDALAAIDIALWDLAGKLAGLPVCKLLGGQRRDRIAAYI 181 (412)
T ss_dssp HHHHHHTHHHHHTTSCGGGHHHHHHHHHTTTGGGTCCSHHHHHHHHHHHHHHHHHHHHHHTCBGGGGTTCCCCSEEEEEE
T ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHcCCCHHHhcCCCCCceEEEEe
Confidence 223344 789999999999999999998643 22334678999999999999999999999999998 57899998
Q ss_pred ee-cCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCC
Q 014285 199 TI-PAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVI 276 (427)
Q Consensus 199 ~i-~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~ 276 (427)
+. +.++++++.+.+++++++||+.+|+|+|.+.+.|+++++++|+ ++|+++||||||++|++++|++++++|+++++
T Consensus 182 s~~~~~~~~~~~~~a~~~~~~G~~~~K~k~g~~~~~~~~~v~~vR~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l- 260 (412)
T 4h1z_A 182 SGLPEDTRAKRAELAAAWQAKGFSSFKFASPVADDGVAKEMEILRERLGPAVRIACDMHWAHTASEAVALIKAMEPHGL- 260 (412)
T ss_dssp CCCCCSSHHHHHHHHHHHHHTTCCEEEEEGGGCTTCHHHHHHHHHHHHCSSSEEEEECCSCCCHHHHHHHHHHHGGGCE-
T ss_pred ccCCCCcHHHHHHHHHHHHhcCcceeccccccchhhHHHHHHHHHhccCCeEEEEeccccCCCHHHHHHHHHhhccccc-
Confidence 74 4457888889999999999999999999888889999999999 58999999999999999999999999999997
Q ss_pred CceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCC
Q 014285 277 PVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGL 355 (427)
Q Consensus 277 ~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi 355 (427)
.|||||++++|++++++|++ ++++|||+||++.+..+++++++.+++|++|+|+++ | ++++++++++|+++|+
T Consensus 261 -~~iEqP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~div~~d~~~-GGit~~~kia~~A~~~gi 334 (412)
T 4h1z_A 261 -WFAEAPVRTEDIDGLARVAA----SVSTAIAVGEEWRTVHDMVPRVARRALAIVQPEMGH-KGITQFMRIGAYAHVHHI 334 (412)
T ss_dssp -EEEECCSCTTCHHHHHHHHH----HCSSEEEECTTCCSHHHHHHHHHTTCCSEECCCHHH-HHHHHHHHHHHHHHHTTC
T ss_pred -ceecCCCCccchHHHHHHHh----hcCCccccCCcccchHhHHHHHHcCCCCEEEecCCC-CChHHHHHHHHHHHHCCC
Confidence 59999999999999999986 789999999999999999999999999999999976 6 9999999999999999
Q ss_pred cEEEcccCchhHHHHHHHHHHhhcCCcceeccCCCc-ccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 356 HLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPF-LLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 356 ~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~~~p~-~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
++++|++++++|+++|++|++++++|..+.|++.+. ...++++.+++.++||++.+|++||||||+|+|++
T Consensus 335 ~v~~h~~~~~~i~~aa~lhl~aa~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~i~vp~~PGLGve~d~eal 406 (412)
T 4h1z_A 335 KVIPHATIGAGIFLAASLQASAALANVDCHEFQHSIFEPNRRLLVGDMDCLNGEYVVPTGPGLGVEPSKEAQ 406 (412)
T ss_dssp EECCCCCSSCSHHHHHHHHHHHHCTTBCCEEECHHHHTGGGGGEEECCEEETTEEECCCSSBTSEEECHHHH
T ss_pred cEEecCCcchHHHHHHHHHHHHhCCCCCeeeccccccccchhhccCCCeEECCEEECCCCCCCCeEECHHHH
Confidence 999999999999999999999999999888876432 34456777888999999999999999999999875
|
| >4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-67 Score=537.23 Aligned_cols=344 Identities=16% Similarity=0.203 Sum_probs=301.7
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHH-HhhHhcCCCCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVRE-ACQFLRQSPPTT 143 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~-~~~~l~g~~~~~ 143 (427)
|||++|+++.+++|+ | . ++.++.++|||+||+|++||||+.+.+ ++++. ....+++ +.|.|+|+++.+
T Consensus 1 MkIt~i~~~~v~~pl--p-~-----~~~~~~~~V~v~td~G~~G~GE~~~~~-~~~~~--~~~~i~~~l~p~LiG~dp~~ 69 (412)
T 4e4u_A 1 MKIVSLETHIVAVPP--P-H-----VGGMYWIFVKLKTDDGIEGVGEIYSAT-FGPKA--MAPIIDDVFERHLLNRDPHH 69 (412)
T ss_dssp CCEEEEEEEEEECCT--T-C-----TTCSEEEEEEEEETTSCEEEEEECCCS-SCHHH--HHHHHHHHHHHHTTTSCTTC
T ss_pred CEEEEEEEEEEccCC--C-c-----cCCCceEEEEEEECCCCEEEEeecCCC-CCHHH--HHHHHHHHhHHHhCCCChhH
Confidence 899999999999998 4 1 234678999999999999999996432 22222 2223444 679999999999
Q ss_pred HHHHHHHHHHHC---CCC-hhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeec---------CCCHHHHH
Q 014285 144 LNFALDEIARIL---PGS-EFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIP---------AVSPAEAS 209 (427)
Q Consensus 144 ~~~~~~~l~~~~---~g~-~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~---------~~~~~~~~ 209 (427)
++.+|+.|++.. .+. ..+++++|||||||||+||.+|+|||+||||. +++||+|.+++ ..+++++.
T Consensus 70 ~e~~~~~l~~~~~~~~~~~~~~~A~said~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~yas~~~~~~~~~~~~~~~e~~~ 149 (412)
T 4e4u_A 70 VERLFRQAYSSGFTQRPDLTMMGVVSGLEMACWDIIGKAAAKPVYELLGGRIHERLRSYTYLYPKNAKGEYDYDDPDLAA 149 (412)
T ss_dssp HHHHHHHHHHTTTCCSCCHHHHHHHHHHHHHHHHHHHHHHTSBGGGTTTCCCCSSEEEEEECCCBCTTSCBCSSCHHHHH
T ss_pred HHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhHhHcCCcHHHHcCCCcCCeeEEEEeccCCcccccccCCCHHHHH
Confidence 999999997642 111 23679999999999999999999999999995 88999998653 46899999
Q ss_pred HHHHHHhhcCCcEEEEeccCC-------------chhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCC
Q 014285 210 ELASKYCKLGFSTLKLNVGRN-------------ITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGV 275 (427)
Q Consensus 210 ~~~~~~~~~Gf~~iKlKiG~~-------------~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l 275 (427)
+++++++++||++||+|+|.+ +++|++++++||+ .++++.|+||+|++|++++|++++++|+++++
T Consensus 150 ~~a~~~~~~G~~~iKlK~g~~~~~~~g~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i 229 (412)
T 4e4u_A 150 ECAAENVKLGFTAVKFDPAGPYTAYSGHQLSLEVLDRCELFCRRVREAVGSKADLLFGTHGQMVPSSAIRLAKRLEKYDP 229 (412)
T ss_dssp HHHHHHHHHTCSEEEECCSCCCBTTCCBCCCHHHHHHHHHHHHHHHHHHTTSSEEEECCCSCBCHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHcCCCEEEECCCCCCccccccccchhhHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCC
Confidence 999999999999999999853 6889999999999 58999999999999999999999999999997
Q ss_pred CCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcC
Q 014285 276 IPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSG 354 (427)
Q Consensus 276 ~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~g 354 (427)
.|||||++++|++++++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|
T Consensus 230 --~~iEeP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~kia~~A~~~g 303 (412)
T 4e4u_A 230 --LWFEEPVPPGQEEAIAQVAK----HTSIPIATGERLTTKYEFHKLLQAGGASILQLNVARVGGLLEAKKIATLAEVHY 303 (412)
T ss_dssp --SEEECCSCSSCHHHHHHHHH----TCSSCEEECTTCCHHHHHHHHHHTTCCSEECCCTTTTTSHHHHHHHHHHHHHTT
T ss_pred --cEEECCCChhhHHHHHHHHh----hCCCCEEecCccCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcC
Confidence 49999999999999999986 78999999999999999999999999999999999997 999999999999999
Q ss_pred CcEEEcccCchhHHHHHHHHHHhhcCCcceecc-CCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 355 LHLMIDGMIETRLATGFALHLAAGLGCIKYVNL-NTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 355 i~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~-~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+++++|++ +|+|+++|++|++++++|+.+.|. +.+..+.++++.+++.++||++.+|++||||+|+|++++
T Consensus 304 i~v~~h~~-~s~i~~aa~~hlaaa~pn~~~~e~~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGve~d~~~l 375 (412)
T 4e4u_A 304 AQIAPHLY-NGPVGAAASIQLATCTPNFLIQESIMTWGGFHAEVVKTPIRWEDGYIIPSNEPGLGIELDMDVV 375 (412)
T ss_dssp CEECCCCC-SCHHHHHHHHHHHHTCTTBCCEEESTTSCHHHHHTBSSCCEEETTEEECCCSSBTSCCBCHHHH
T ss_pred CEEEecCC-CcHHHHHHHHHHHHhCCCceeeeecCccchhhHhhccCCCeeECCEEECCCCCCCCccCCHHHH
Confidence 99999975 799999999999999999988873 333344567888889999999999999999999999865
|
| >3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-68 Score=535.55 Aligned_cols=344 Identities=16% Similarity=0.218 Sum_probs=300.2
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHH---------HhhH
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVRE---------ACQF 135 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~---------~~~~ 135 (427)
|||++|+++.+++|++.+. ++++.++ ++|+|+|++|++||||+.. +.+ .....+++ +.|.
T Consensus 3 MkI~~i~~~~~~~P~~~~~----~~~~~~~-~~V~v~td~G~~G~GE~~~----~~~--~~~~~i~~~~~~~~~~~l~p~ 71 (374)
T 3sjn_A 3 LKITDIEVLHLRVPAMDAD----CEWGEDA-VIVKVHTDKGIVGVGEADS----SPL--VVQACIEAPQTNFYCNGLKRL 71 (374)
T ss_dssp CBEEEEEEEEEESSCTTSC----CCTTSEE-EEEEEEETTSCEEEEEESS----CHH--HHHHHHHCCCSBTTBCCHHHH
T ss_pred cEEEEEEEEEEeccCcCCc----CcccceE-EEEEEEECCCCEEEEcCCC----ChH--HHHHHHHhhhccchHhHHHHH
Confidence 8999999999998877663 2233445 8999999999999999421 111 12223444 8899
Q ss_pred hcCCCCCCHHHHHHHHHHHCCC----ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCC-CCCceeeeeeec-CCCHHHHH
Q 014285 136 LRQSPPTTLNFALDEIARILPG----SEFASVRAGVEMALIDAVANSIDIPLWRLFGG-ASNSLSTAITIP-AVSPAEAS 209 (427)
Q Consensus 136 l~g~~~~~~~~~~~~l~~~~~g----~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg-~~~~ip~~~~i~-~~~~~~~~ 209 (427)
|+|+++.+++.+|+.|++...+ ....++++|||||||||+||.+|+|||+|||| .++++|+|.... ..+++++.
T Consensus 72 liG~d~~~~~~~~~~l~~~~~~~~~~g~~~~A~said~ALwDl~gK~~g~Pv~~LLGg~~r~~v~~y~~~~~~~~~e~~~ 151 (374)
T 3sjn_A 72 LIGENALEIERLWNKMYWGSNYMGRRGAGIHAISAIDIALWDIAGQFYGVPVHTLLGGKYRDKIRCYGTFIPADKPEDNV 151 (374)
T ss_dssp HTTSBTTCHHHHHHHHHHHTTTTCSSBHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSEEEEEEEECCCSSGGGGH
T ss_pred HcCCCcccHHHHHHHHHHhhhhcCCccHHHHHHHHHHHHHHHHHHhHcCCcHHHHcCCCcCCceeEEeccCCCCCHHHHH
Confidence 9999999999999999875432 23457999999999999999999999999999 589999993322 12348899
Q ss_pred HHHHHHhhcCCcEEEEecc---CCchhhHHHHHHHHHh-CCCcEEEEeCCCCCC-HHHHHHHHHHhhhCCCCCceEeCCC
Q 014285 210 ELASKYCKLGFSTLKLNVG---RNITADFDVLQAIHAV-HPHCSFILDANEGYT-SEEAVEVLGKLNDMGVIPVLFEQPV 284 (427)
Q Consensus 210 ~~~~~~~~~Gf~~iKlKiG---~~~~~d~~~l~~ir~~-~~~~~L~vDAN~~~s-~~~A~~~l~~L~~~~l~~~~iEqP~ 284 (427)
+.+++++++||++||+|+| .++++|++++++||+. ++++.|+||+|++|+ +++|+++++.|+++++ .|||||+
T Consensus 152 ~~a~~~~~~Gf~~iKlk~g~~g~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~d~~~A~~~~~~l~~~~i--~~iEqP~ 229 (374)
T 3sjn_A 152 AIVQGLKDQGFSSIKFGGGVMGDDPDTDYAIVKAVREAAGPEMEVQIDLASKWHTCGHSAMMAKRLEEFNL--NWIEEPV 229 (374)
T ss_dssp HHHHHHHTTTCSEEEEECTTTTSCHHHHHHHHHHHHHHHCSSSEEEEECTTTTCSHHHHHHHHHHSGGGCC--SEEECSS
T ss_pred HHHHHHHHcCCCEEEeccCCCCCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHHHHhhhcCc--eEEECCC
Confidence 9999999999999999999 4689999999999994 899999999999999 9999999999999997 4999999
Q ss_pred CCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccC
Q 014285 285 HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMI 363 (427)
Q Consensus 285 ~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~ 363 (427)
+++|++++++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++
T Consensus 230 ~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~~- 304 (374)
T 3sjn_A 230 LADSLISYEKLSR----QVSQKIAGGESLTTRYEFQEFITKSNADIVQPDITRCGGITEMKKIYDIAQMNGTQLIPHGF- 304 (374)
T ss_dssp CTTCHHHHHHHHH----HCSSEEEECTTCCHHHHHHHHHHHHCCSEECCBTTTSSHHHHHHHHHHHHHHHTCEECCBCC-
T ss_pred CcccHHHHHHHHh----hCCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEecCC-
Confidence 9999999999986 68999999999999999999999999999999999997 99999999999999999999998
Q ss_pred chhHHHHHHHHHHhhcCCcceeccCC-CcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 364 ETRLATGFALHLAAGLGCIKYVNLNT-PFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 364 es~ig~~a~~hlaaal~~~~~~e~~~-p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+|+|++++++|++++++|..+.|+.. +..+.++++.+++.++||++.+|++||||+|+|+++|
T Consensus 305 ~~~i~~aa~~hlaaa~~~~~~~e~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 368 (374)
T 3sjn_A 305 STGILLHASVHFLAACEQGTLMEFSQSSSPLFTSLVKNQLQFDNGFVAVSDAPGLGIELDEELI 368 (374)
T ss_dssp SCHHHHHHHHHHHHTCTTCCEEEEECCCCHHHHHSBTTCCCEETTEEECCCSSBTCCCBCHHHH
T ss_pred CcHHHHHHHHHHHHhCCCCcEEEecCCcchhhhhhccCCCeeeCcEEECCCCCCCCCCcCHHHH
Confidence 89999999999999999998887653 3344677888889999999999999999999999875
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-67 Score=527.78 Aligned_cols=350 Identities=16% Similarity=0.242 Sum_probs=317.6
Q ss_pred eeEEEEEEEEEEeeccc-ccccccee-EEeeeEEEEEEEEcCCceEEEEeecC-CCCCcch-HHHHHHHHHHhhHhcCCC
Q 014285 65 VDVQRAEGRELNVALSA-PLSLGLSS-VENVENVAIRVELSNGCVGWGEVAVV-PLVTGDQ-TKALVKVREACQFLRQSP 140 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~-p~~~a~~~-~~~~~~vlV~v~t~~G~~G~GE~~~~-~~~s~~~-~~~~~~~~~~~~~l~g~~ 140 (427)
|||++++++.+++|++. ||.++.++ .+.++.++|+|+|++|.+||||+.+. +.|+++. ......++.++|.|+|++
T Consensus 3 mkI~~i~~~~~~~pl~~~p~~~s~~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~~i~~l~~~l~g~d 82 (379)
T 2rdx_A 3 LRITRIRLYKTDLPYVDGSYGWGAGNAITVARASVVVIDTDAGLQGCGEFTPCGENYMIAHSEGVDAFARLAAPQLLGQD 82 (379)
T ss_dssp CCEEEEEEEEEEEEBTTSCCEETTTEECSEEEEEEEEEEETTSCEEEEEEBCSSTTSSSCCTTHHHHHHHHHHHHHTTSC
T ss_pred CEEEEEEEEEEeeecCCCCcEecCceeecccceEEEEEEECCCCEEEEEeecCCCCcCCCCHHHHHHHHHHHHHHHcCCC
Confidence 89999999999999999 99999998 78899999999999999999999987 6676643 233444567899999999
Q ss_pred CCCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhhcC
Q 014285 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLG 219 (427)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~G 219 (427)
+.+++.+|+.|.....| .+++++||||||||++||..|+|||+||||. ++++|+|++++..+++++.+.+++++++|
T Consensus 83 ~~~~~~~~~~l~~~~~g--~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~v~~~~~~~~~~~~~~~~~a~~~~~~G 160 (379)
T 2rdx_A 83 PRQVARMERLMDHLVQG--HGYAKAPFDAAFWDILGQATGQPVWMLLGGKLCDGAPMYRVAPQRSEAETRAELARHRAAG 160 (379)
T ss_dssp TTCHHHHHHHHHHHSSS--CHHHHHHHHHHHHHHHHHHHTCBHHHHTTSCCCSSEEBCEECCCSCSHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHhHHHhCCCHHHHcCCCCCCceeEEEEecCCCHHHHHHHHHHHHHcC
Confidence 99999999999655555 4689999999999999999999999999997 78999999988889999999999999999
Q ss_pred CcEEEEeccCCchhhHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHh
Q 014285 220 FSTLKLNVGRNITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNF 298 (427)
Q Consensus 220 f~~iKlKiG~~~~~d~~~l~~ir~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~ 298 (427)
|+.+|+|+|.+++.|++++++||+. ++++.|+||+|++|++++|+++++.|++++ + |||||++ |++++++|++
T Consensus 161 f~~iKik~g~~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~--i-~iE~P~~--~~~~~~~l~~- 234 (379)
T 2rdx_A 161 YRQFQIKVGADWQSDIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLD--Y-ILEQPCR--SYEECQQVRR- 234 (379)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHGGGSCTTCEEEEECTTCSCHHHHHHHHHHTTTSC--C-EEECCSS--SHHHHHHHHT-
T ss_pred CCEEEEeccCCHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhCC--e-EEeCCcC--CHHHHHHHHh-
Confidence 9999999998899999999999995 789999999999999999999999999997 4 9999998 8999999985
Q ss_pred hccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHh
Q 014285 299 ARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377 (427)
Q Consensus 299 ~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaa 377 (427)
++++||++||++.+..+++++++.+++|++++|++++| ++++++++++|+++|+++++||++||++++++++|+++
T Consensus 235 ---~~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~~a~~~laa 311 (379)
T 2rdx_A 235 ---VADQPMKLDECVTGLHMAQRIVADRGAEICCLKISNLGGLSKARRTRDFLIDNRMPVVAEDSWGGEIASAAVAHFAA 311 (379)
T ss_dssp ---TCCSCEEECTTCCSHHHHHHHHHHTCCSEEEEETTTTTSHHHHHHHHHHHHHTTCCEEEECSBCSHHHHHHHHHHHH
T ss_pred ---hCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCeEEEeeccCcHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred hcCCccee-ccC-CCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 378 GLGCIKYV-NLN-TPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 378 al~~~~~~-e~~-~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+++++.+. ..+ .| ++.++++.+++.++||++.+|++||||+++|++++
T Consensus 312 a~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 361 (379)
T 2rdx_A 312 STPEEFLINSTDLMN-YNTRSTGLGGPTVHQGRLYASDTPGLGVTPDFNSL 361 (379)
T ss_dssp TSCTTTEEEECCGGG-GBSSCSEEECCEEETTEEECCCSSBTSEEECHHHH
T ss_pred cCCCccccccccccc-hhhhccccCCceEECCEEEcCCCCcCCeeeCHHHH
Confidence 99986543 222 44 33677777788999999999999999999999865
|
| >3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-67 Score=541.68 Aligned_cols=343 Identities=15% Similarity=0.254 Sum_probs=303.9
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHH-HhhHhcCCCCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVRE-ACQFLRQSPPTT 143 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~-~~~~l~g~~~~~ 143 (427)
|||++|+++.++.|++ .+ ..++.++|||+||+|++|||||++.+. ..+ .....+++ +.|.|+|+++.+
T Consensus 2 MkIt~i~~~~~~~p~~---~~-----~~~~~v~V~v~Td~G~~G~GE~~~~~~-~~~--~v~~~i~~~l~p~LiG~dp~~ 70 (433)
T 3rcy_A 2 VKLRDLDIIVTAPPAP---GW-----GGRYWILVKLTTDDGITGWGECYAASV-GPE--AMRAVIEDVFARHMEGENPEN 70 (433)
T ss_dssp CCEEEEEEEEECCCTT---CT-----TCSCEEEEEEEETTSCEEEEEECCCSS-CHH--HHHHHHHHHHHHHTTTSCTTC
T ss_pred CeEEEEEEEEEcCCCC---cc-----CCceEEEEEEEECCCCEEEEeccCCCC-CHH--HHHHHHHHHHHHHhCCCCccc
Confidence 8999999999999874 11 236889999999999999999876543 211 12223454 889999999999
Q ss_pred HHHHHHHHHHHC--CC-C-hhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeee---c-------CCCHHHH
Q 014285 144 LNFALDEIARIL--PG-S-EFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITI---P-------AVSPAEA 208 (427)
Q Consensus 144 ~~~~~~~l~~~~--~g-~-~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i---~-------~~~~~~~ 208 (427)
++.+|+.|++.. .+ . ..++|++|||||||||+||.+|+|||+||||. +++||+|.++ + ..+++++
T Consensus 71 ie~~~~~l~~~~~~~~g~~~~~~A~saID~ALWDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~g~~~~~~~~~~e~~ 150 (433)
T 3rcy_A 71 IELMFRRVYSSGFTQRPDLTAIGAFSGLEIACWDILGKARGRPVWALLGGKMNPRIRAYTYLYPLPHHPITPFWTSADMA 150 (433)
T ss_dssp HHHHHHHHHHTTTCCSCCHHHHHHHHHHHHHHHHHHHHHHTSBGGGGTTCCSCSSEEEEEECCCCTTSCHHHHTTCHHHH
T ss_pred HHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCeEEEEEEEcccCCcccccCCCCHHHH
Confidence 999999998742 22 2 35789999999999999999999999999996 8899999865 2 2689999
Q ss_pred HHHHHHHhhcCCcEEEEeccC-------------CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCC
Q 014285 209 SELASKYCKLGFSTLKLNVGR-------------NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMG 274 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG~-------------~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~ 274 (427)
.+.+++++++||++||+|+|. +++.|++++++||+ .++++.|+||+|++|++++|+++++.|++++
T Consensus 151 ~~~a~~~~~~Gf~~iKlk~g~~~~~~~G~~~~~~~~~~d~e~v~avR~avG~d~~L~vDan~~~t~~~A~~~~~~Le~~~ 230 (433)
T 3rcy_A 151 AESAADCVARGYTAVKFDPAGPYTLRGGHMPAMTDISLSVEFCRKIRAAVGDKADLLFGTHGQFTTAGAIRLGQAIEPYS 230 (433)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCCBTTCCBCCCHHHHHHHHHHHHHHHHHHTTSSEEEECCCSCBCHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHcCCCEEEEcCCCCcccccCCCcchhhHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHhhhcC
Confidence 999999999999999999974 35789999999999 5899999999999999999999999999999
Q ss_pred CCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHc
Q 014285 275 VIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKS 353 (427)
Q Consensus 275 l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~ 353 (427)
+ .|||||++++|++++++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++
T Consensus 231 i--~~iEeP~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~g~~D~v~~d~~~~GGit~~~kia~lA~~~ 304 (433)
T 3rcy_A 231 P--LWYEEPVPPDNVGAMAQVAR----AVRIPVATGERLTTKAEFAPVLREGAAAILQPALGRAGGIWEMKKVAAMAEVY 304 (433)
T ss_dssp C--SEEECCSCTTCHHHHHHHHH----HSSSCEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHTHHHHHHHHHHHHHTT
T ss_pred C--CEEECCCChhhHHHHHHHHh----ccCCCEEecCCCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHc
Confidence 7 49999999999999999986 68999999999999999999999999999999999997 99999999999999
Q ss_pred CCcEEEcccCchhHHHHHHHHHHhhcCCcceeccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 354 GLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 354 gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
|+++++|+ .+|+|+++|++|++++++|+.++|++.+ .+.++++.+++.++||++.+|++||||||+|+++|
T Consensus 305 gv~~~~h~-~~s~i~~aa~lhlaaa~pn~~~~E~~~~-~~~~~~~~~~~~~~~G~i~~p~~PGLGve~d~~~l 375 (433)
T 3rcy_A 305 NAQMAPHL-YAGPVEWAANVHFAASIPNILMCESIET-PFHDALIKGSIRVEGGYITPPEAPGLGIEVDEALA 375 (433)
T ss_dssp TCEECCCC-SSCHHHHHHHHHHHHTCTTBCCEECCCC-HHHHHHTTTCSCEETTEECCCCSSBTCCCCCHHHH
T ss_pred CCEEEecC-CCCHHHHHHHHHHHHHhccCcEEEeccc-hhhhhhcCCCceEECCEEEcCCCCcCCcccCHHHH
Confidence 99999998 5999999999999999999988888765 44567778889999999999999999999999865
|
| >4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-67 Score=534.56 Aligned_cols=344 Identities=15% Similarity=0.180 Sum_probs=300.7
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHH-HhhHhcCCCCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVRE-ACQFLRQSPPTT 143 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~-~~~~l~g~~~~~ 143 (427)
|||++|+++.+++|+ | . +..++.++|||+||+|++||||+.+.. ++++. ....+++ +.|.|+|+++.+
T Consensus 2 MkIt~i~~~~v~~pl--p-~-----~~~~~~~~V~v~td~G~~G~GE~~~~~-~~~~~--~~~~i~~~l~p~liG~dp~~ 70 (404)
T 4e5t_A 2 MRLSDIETFVVGNPP--P-R-----HGGRYFIFVKLVTACGITGYGEIYNAT-FGPDL--VAKMAEDVFARQFAGEDPHH 70 (404)
T ss_dssp CCEEEEEEEEEECCT--T-C-----TTCSEEEEEEEEETTSCEEEEEECCCS-SCHHH--HHHHHHHHHHHHTTTSCTTC
T ss_pred CEEEEEEEEEeccCC--c-c-----cCCCceEEEEEEECCCCEEEEeeccCC-CchHH--HHHHHHHHHHHHhcCCChhH
Confidence 899999999999998 4 1 224678999999999999999996432 22222 1223444 679999999999
Q ss_pred HHHHHHHHHHHC---CCC-hhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeec---------------CC
Q 014285 144 LNFALDEIARIL---PGS-EFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIP---------------AV 203 (427)
Q Consensus 144 ~~~~~~~l~~~~---~g~-~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~---------------~~ 203 (427)
++.+|+.|++.. .+. ..+++++|||||||||+||.+|+|||+||||. ++++|+|.+++ ..
T Consensus 71 ~e~~~~~~~~~~~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~~~~p~~d~~~~~~ 150 (404)
T 4e5t_A 71 IEKLWHKTYGAGYTQRPDVTVMGVLSGLEMACWDIIGKAAGKPAYELLGGKVHERLRSYTYLYPTDGDVYPDPDKPNVYN 150 (404)
T ss_dssp HHHHHHHHHTTTSCCSCCHHHHHHHHHHHHHHHHHHHHHHTSBGGGTTTCCCCSSEEEEEECCC----------CCCTTT
T ss_pred HHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHhhhHcCCcHHHHcCCCCcCeEEEEEEeccccccccccccccccCC
Confidence 999999997642 111 23679999999999999999999999999995 89999997653 45
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCC-------------chhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHH
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRN-------------ITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGK 269 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~-------------~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~ 269 (427)
+++++.+++++++++||++||+|+|.+ +++|++++++||+ .++++.|+||+|++|++++|++++++
T Consensus 151 ~~e~~~~~a~~~~~~G~~~~KlK~g~~~~~~~g~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~A~~~~~~ 230 (404)
T 4e5t_A 151 DADMAAEAAAKAVDQGFTAVKFDPAGAYTIYDGHQPSLEDLERSEAFCKQIRAAVGTKADLLFGTHGQFTVSGAKRLARR 230 (404)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEECCSCCCBTTCSBCCCHHHHHHHHHHHHHHHHHHGGGSEEEECCCSCBCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEeeCCCCCCcccccccccHHHHHHHHHHHHHHHHHcCCCCeEEEeCCCCcCHHHHHHHHHH
Confidence 899999999999999999999999854 6889999999999 57999999999999999999999999
Q ss_pred hhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHH
Q 014285 270 LNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIK 348 (427)
Q Consensus 270 L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~ 348 (427)
|+++++ .|||||++++|++++++|++ ++++||++||++.+..+++++++.+++|++|+|++++| +++++++++
T Consensus 231 l~~~~i--~~iEeP~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~~ia~ 304 (404)
T 4e5t_A 231 LEAYDP--LWFEEPIPPEKPEDMAEVAR----YTSIPVATGERLCTKYEFSRVLETGAASILQMNLGRVGGLLEAKKIAA 304 (404)
T ss_dssp HGGGCC--SEEECCSCTTCHHHHHHHHH----HCSSCEEECTTCCHHHHHHHHHHHTCCSEECCCTTTSSCHHHHHHHHH
T ss_pred HhhcCC--cEEECCCCcccHHHHHHHHh----hCCCCEEeCCCcCCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHH
Confidence 999997 49999999999999999986 68999999999999999999999999999999999997 999999999
Q ss_pred HHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcceecc-CCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 349 ATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNL-NTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 349 ~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~-~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+|+++|+++++|++ +|+|+++|++|++++++|+.+.|. +....+.++++.+++.++||++.+|++||||+|+|++.+
T Consensus 305 ~A~~~gi~~~~h~~-~s~i~~aa~~hlaaa~p~~~~~e~~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~~ 382 (404)
T 4e5t_A 305 MAECHSAQIAPHLY-CGPLVALANIQLATCSPNFLVLESIRTFDGFFAELLTTPIRWENGYIIPSQEPGLGHDLNEDVA 382 (404)
T ss_dssp HHHHTTCEECCCCS-SCHHHHHHHHHHHHTCTTBCCEEESTTSCTHHHHTBSSCCEEETTEEECCCSSBTSSCBCHHHH
T ss_pred HHHHcCCEEeecCC-CcHHHHHHHHHHHHhCCCceeEEecccccchhHHhcCCCCeeeCCEEECCCCCCCCcCCCHHHH
Confidence 99999999999985 799999999999999999988873 333334567788889999999999999999999999864
|
| >2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-66 Score=520.45 Aligned_cols=340 Identities=28% Similarity=0.421 Sum_probs=314.5
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchH-HHHHHHHHHhhHhcCCCCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQT-KALVKVREACQFLRQSPPTT 143 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~-~~~~~~~~~~~~l~g~~~~~ 143 (427)
|||++++++.+++|++.||.++.++.+.++.++|+|+|++|.+||||+.+.+.|+++.. .....++++.|.|+|+++.+
T Consensus 2 mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~e~~~~~~~~i~~l~~~l~g~d~~~ 81 (345)
T 2zad_A 2 SRIVNVKLSLKRYEYEKPFHITGSVSSESRNVEVEIVLESGVKGYGEASPSFRVNGERVEALLAIENAVREMITGIDVRN 81 (345)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECCCHHHHCCCHHHHHHTHHHHHHHHTTCBGGG
T ss_pred CEEEEEEEEEEEeeccCCEEecCeeEeeceEEEEEEEECCCCEEEEEecCCCCcCCCCHHHHHHHHHHHHHHhCCCChhh
Confidence 79999999999999999999999999999999999999999999999998765555433 33334566899999999999
Q ss_pred HHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecCCCHHHHHHHHHHHhhcCCcEE
Q 014285 144 LNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTL 223 (427)
Q Consensus 144 ~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~i 223 (427)
++.+|+.| +.+.+ .+++++|||+||||+.||..|+|||+||||.++++|+|.+++..+++++.+.+++++++||+++
T Consensus 82 ~~~~~~~l-~~~~~--~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~v~~~~~~~~~~~~~~~~~a~~~~~~Gf~~i 158 (345)
T 2zad_A 82 YARIFEIT-DRLFG--FPSLKAAVQFATLDALSQELGTQVCYLLGGKRDEIETDKTVGIDTVENRVKEAKKIFEEGFRVI 158 (345)
T ss_dssp HHHHHHHH-TTCTT--SHHHHHHHHHHHHHHHHHHHTSCHHHHTTCCCSEEEBCEEECSCCHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHH-HHhcc--chHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceeeeEEecCCCHHHHHHHHHHHHHcCcCEE
Confidence 99999998 43332 3679999999999999999999999999998889999999988899999999999999999999
Q ss_pred EEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCc--eEeCCCCCCChhhHHHHHHhhcc
Q 014285 224 KLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPV--LFEQPVHRDDWSGLHDVSNFARD 301 (427)
Q Consensus 224 KlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~--~iEqP~~~~d~~~~~~L~~~~r~ 301 (427)
|+|+|.++++|++++++||+.++++.|+||+|++|++++|+++++.|+++++ . |||||++++|++++++|++
T Consensus 159 Kik~g~~~~~d~~~v~avr~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~~~iE~P~~~~~~~~~~~l~~---- 232 (345)
T 2zad_A 159 KIKVGENLKEDIEAVEEIAKVTRGAKYIVDANMGYTQKEAVEFARAVYQKGI--DIAVYEQPVRREDIEGLKFVRF---- 232 (345)
T ss_dssp EEECCSCHHHHHHHHHHHHHHSTTCEEEEECTTCSCHHHHHHHHHHHHHTTC--CCSEEECCSCTTCHHHHHHHHH----
T ss_pred EEeecCCHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCC--CeeeeeCCCCcccHHHHHHHHH----
Confidence 9999998999999999999998899999999999999999999999999986 7 9999999999999999986
Q ss_pred ccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcC
Q 014285 302 TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLG 380 (427)
Q Consensus 302 ~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~ 380 (427)
++++||++||++.+..+++++++.+++|++++|+++ | ++++++++++|+++|+++++|++.||+|++++++|++++++
T Consensus 233 ~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~ik~~~-GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~hlaa~~~ 311 (345)
T 2zad_A 233 HSPFPVAADESARTKFDVMRLVKEEAVDYVNIKLMK-SGISDALAIVEIAESSGLKLMIGCMGESSLGINQSVHFALGTG 311 (345)
T ss_dssp HSSSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHH-HHHHHHHHHHHHHHTTTCEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred hCCCCEEEeCCcCCHHHHHHHHHhCCCCEEEEeccc-ccHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHHHcCC
Confidence 689999999999999999999999999999999999 9 99999999999999999999999999999999999999999
Q ss_pred CcceeccCCCcccccCCCCCceeeeCcEEecCCC
Q 014285 381 CIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNA 414 (427)
Q Consensus 381 ~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~ 414 (427)
|+.+.|+++|+.+.++++.+++.++||++.+|++
T Consensus 312 ~~~~~e~~~~~~~~~d~~~~~~~~~~G~~~~p~~ 345 (345)
T 2zad_A 312 AFEFHDLDSHLMLKEEVFRGKFIQDGPRMRVKDQ 345 (345)
T ss_dssp CCSEECCCGGGGBSSCCCCCSSEEETTEEECCCC
T ss_pred CCceeecCCchhhhhccccCCcEEECCEEeCCCC
Confidence 9999999988777788888889999999999974
|
| >3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-67 Score=533.26 Aligned_cols=340 Identities=13% Similarity=0.159 Sum_probs=300.6
Q ss_pred eeeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHH-HhhHhcCCCCC
Q 014285 64 WVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVRE-ACQFLRQSPPT 142 (427)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~-~~~~l~g~~~~ 142 (427)
.||||+|+++.++.. ..+.++|||+||+|++||||+.+.. +.+ .....+++ +.|.|+|+++.
T Consensus 5 ~mkIt~v~~~~~~~~-------------~~~~~~V~v~td~G~~G~GE~~~~~--~~~--~~~~~i~~~l~p~liG~d~~ 67 (401)
T 3sbf_A 5 ETIISDIHCIITKPD-------------RHNLITVVVETNEGVTGFGCATFQQ--RPL--AVKTMVDEYLKPILIGKNAN 67 (401)
T ss_dssp CCBEEEEEEEEECSS-------------SSCEEEEEEEETTSCEEEEECCCTT--SHH--HHHHHHHHTHHHHHTTSBTT
T ss_pred CeEEEEEEEEEEcCC-------------CceEEEEEEEeCCCCEEEEccccCC--CHH--HHHHHHHHHHHHHHcCCChh
Confidence 399999999765310 1267999999999999999997532 222 22233555 89999999999
Q ss_pred CHHHHHHHHHHHC--C-CChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhhc
Q 014285 143 TLNFALDEIARIL--P-GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKL 218 (427)
Q Consensus 143 ~~~~~~~~l~~~~--~-g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~ 218 (427)
+++.+|+.|++.. . |...+++++|||||||||+||.+|+|||+||||. ++++|+|.+++..+++++.+.+++++++
T Consensus 68 ~~e~~~~~~~~~~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~e~~~~~a~~~~~~ 147 (401)
T 3sbf_A 68 NIEDLWQMMMVNAYWRNGPVINNAISGVDMALWDIKAKLAGMPLHQLFGGKSRDAIPVYTHATSDTMEGIYDLVEGFLEK 147 (401)
T ss_dssp CHHHHHHHHHHTTSSCCSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHTCCSSSSEEEEEEEEESSHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHhHhHhCCcHHHHhCCCcCCeeeEEEeCCCCCHHHHHHHHHHHHHc
Confidence 9999999998752 2 2234679999999999999999999999999997 7899999988888999999999999999
Q ss_pred CCcEEEEeccCC------------------------chhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhC
Q 014285 219 GFSTLKLNVGRN------------------------ITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDM 273 (427)
Q Consensus 219 Gf~~iKlKiG~~------------------------~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~ 273 (427)
||++||+|+|.+ ++.|++++++||+ .++++.|+||+|++|++++|++++++|+++
T Consensus 148 G~~~~K~KvG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~A~~~~~~L~~~ 227 (401)
T 3sbf_A 148 GYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGNQFHILHDVHERLFPNQAIQFAKEVEQY 227 (401)
T ss_dssp TCCEEEEEESCCCSCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHTTSSEEEEECTTCSCHHHHHHHHHHHGGG
T ss_pred CCCEEEEeeccCCcccccccccccccccccccchHHHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 999999999853 4678999999999 589999999999999999999999999999
Q ss_pred CCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHH
Q 014285 274 GVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRK 352 (427)
Q Consensus 274 ~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~ 352 (427)
++ .|||||++++|++++++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|++
T Consensus 228 ~i--~~iEqP~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~~kia~~A~~ 301 (401)
T 3sbf_A 228 KP--YFIEDILPPNQTEWLDNIRS----QSSVSLGLGELFNNPEEWKSLIANRRIDFIRCHVSQIGGITPALKLGHLCQN 301 (401)
T ss_dssp CC--SCEECSSCTTCGGGHHHHHT----TCCCCEEECTTCCSHHHHHHHHHTTCCSEECCCGGGGTSHHHHHHHHHHHHH
T ss_pred CC--CEEECCCChhHHHHHHHHHh----hCCCCEEeCCccCCHHHHHHHHhcCCCCEEecCccccCCHHHHHHHHHHHHH
Confidence 97 49999999999999999985 78999999999999999999999999999999999997 9999999999999
Q ss_pred cCCcEEEcccC-chhHHHHHHHHHHhhcCCcceeccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 353 SGLHLMIDGMI-ETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 353 ~gi~~~~~s~~-es~ig~~a~~hlaaal~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+|+++++|++. +|+|+++|++|++++++|+.+.|++.+....++++.+++.++||++.+|++||||+|+|+++|
T Consensus 302 ~gi~~~~h~~~~~s~i~~aA~~hlaaa~p~~~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~l 376 (401)
T 3sbf_A 302 FGVRIAWHCAPDMTPIGAAVNTHLNVHLHNAAIQEHVEYNGNTHKVFPNAAEPINGYLYASEIAGIGVEIDREAA 376 (401)
T ss_dssp HTCEECCCCCTTSCHHHHHHHHHHHHHSTTBCCEECCCCCHHHHHHSTTCCCCBTTEECCCCSSBSSCCCCHHHH
T ss_pred cCCEEEecCCcccchHHHHHHHHHHHhCCCcceeeccCCchhhHhhcCCCCeeeCCEEECCCCCCCCceECHHHH
Confidence 99999999986 799999999999999999988888765444567778888999999999999999999999865
|
| >3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-67 Score=535.75 Aligned_cols=339 Identities=14% Similarity=0.168 Sum_probs=300.4
Q ss_pred eeeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHH-HhhHhcCCCCC
Q 014285 64 WVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVRE-ACQFLRQSPPT 142 (427)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~-~~~~l~g~~~~ 142 (427)
.|||++|+.+.++- .++.++|||+||+|++||||+.+.. . .......+++ +.|.|+|+++.
T Consensus 22 ~mkIt~v~~~~~~~--------------~~~~v~V~v~td~Gi~G~GE~~~~~--~--~~~~~~~i~~~l~p~LiG~dp~ 83 (424)
T 3v3w_A 22 SMKIVDAKVIVTCP--------------GRNFVTLKIVTDQGIYGIGDATLNG--R--EKSVVSYLEDYLIPVLIGRDPQ 83 (424)
T ss_dssp -CCEEEEEEEEECS--------------SSCEEEEEEEETTSCEEEEECCCTT--C--HHHHHHHHHHTHHHHHTTSCTT
T ss_pred CCEEEEEEEEEEcC--------------CCCEEEEEEEECCCCEEEEeccCCC--C--hHHHHHHHHHHHHHHhcCCChh
Confidence 49999999876431 1367999999999999999986532 1 1122334555 89999999999
Q ss_pred CHHHHHHHHHHHC--C-CChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhhc
Q 014285 143 TLNFALDEIARIL--P-GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKL 218 (427)
Q Consensus 143 ~~~~~~~~l~~~~--~-g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~ 218 (427)
+++.+|+.|++.. . |...+++++|||||||||+||.+|+|||+||||. +++||+|.+++..+++++.+++++++++
T Consensus 84 ~ie~i~~~~~~~~~~~~g~~~~~A~sAiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~e~~~~~a~~~~~~ 163 (424)
T 3v3w_A 84 QIEDIWQFFYRGAYWRRGPVGMTALAAIDVALWDIKAKLANMPLYQLLGGKSRERILSYTHANGKDLDSTLEAVRKAKDK 163 (424)
T ss_dssp CHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHHTTSBHHHHHTCCSCSSEEEEEEEEESSHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCcCCCceeEEEeCCCCCHHHHHHHHHHHHHc
Confidence 9999999998753 2 2234679999999999999999999999999997 7899999988888999999999999999
Q ss_pred CCcEEEEeccC---------------------------------CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHH
Q 014285 219 GFSTLKLNVGR---------------------------------NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAV 264 (427)
Q Consensus 219 Gf~~iKlKiG~---------------------------------~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~ 264 (427)
||++||+|+|. +++.|++++++||+ .++++.|+||+|++|++++|+
T Consensus 164 Gf~~iKlKvG~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~d~~~~~~~d~e~v~avR~avG~d~~l~vDaN~~~~~~~A~ 243 (424)
T 3v3w_A 164 GYKAIRVQCGIPGIAKTYGVSTNTKSYEPADADLPSVEVWSTEKYLNYIPDVFAAVRKEFGPDIHLLHDVHHRLTPIEAA 243 (424)
T ss_dssp TCSEEEEEECCTTCSCCTTCC-----CCSCCBSSCCEEEECHHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHH
T ss_pred CCCEEEEeccCccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHH
Confidence 99999999984 14678999999999 589999999999999999999
Q ss_pred HHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHH
Q 014285 265 EVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGT 343 (427)
Q Consensus 265 ~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~ 343 (427)
+++++|+++++ .|||||++++|++++++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++
T Consensus 244 ~~~~~L~~~~i--~~iEqP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~ga~d~v~~k~~~~GGit~~ 317 (424)
T 3v3w_A 244 RLGKALEPYHL--FWMEDAVPAENQESFKLIRQ----HTTTPLAVGEVFNSIHDCRELIQNQWIDYIRTTIVHAGGISQM 317 (424)
T ss_dssp HHHHHHGGGCC--SEEECCSCCSSTTHHHHHHH----HCCSCEEECTTCCSGGGTHHHHHTTCCSEECCCTTTTTHHHHH
T ss_pred HHHHHHHhcCC--CEEECCCChHhHHHHHHHHh----hCCCCEEEccCcCCHHHHHHHHHcCCCCeEeecchhcCCHHHH
Confidence 99999999997 49999999999999999986 68999999999999999999999999999999999997 9999
Q ss_pred HHHHHHHHHcCCcEEEcccC-chhHHHHHHHHHHhhcCCcceeccCCCcccccCCCCCceeeeCcEEecCCCCCcccccC
Q 014285 344 LQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLK 422 (427)
Q Consensus 344 ~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hlaaal~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d 422 (427)
++++++|+++|+++++|++. +|+|+++|++|++++++|+.+.|++.+....++++.+++.++||++.+|++||||||+|
T Consensus 318 ~~ia~~A~~~gi~~~~h~~~~~s~ig~aA~~hlaaa~pn~~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGveld 397 (424)
T 3v3w_A 318 RRIADFASLFHVRTGFHGATDLSPVCMGAALHFDYWVPNFGIQEHMAHSEQMNAVFPHAYTFNDGYFTPGEKPGHGVDID 397 (424)
T ss_dssp HHHHHHHHTTTCEEEECCCTTSCHHHHHHHHHHHHHCTTEEEEECCCCCHHHHHHSCBCCEEETTEEECCSSSBTSBCCC
T ss_pred HHHHHHHHHcCCEEEecCCCcccHHHHHHHHHHHHhCCCcceEeecCcchhhHhhcCCCceeeCCEEECCCCCCCCcccC
Confidence 99999999999999999987 79999999999999999998888876554556778888999999999999999999999
Q ss_pred CCcC
Q 014285 423 WTIV 426 (427)
Q Consensus 423 ~~~v 426 (427)
+++|
T Consensus 398 ~~~l 401 (424)
T 3v3w_A 398 EKLA 401 (424)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
|
| >3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-67 Score=534.99 Aligned_cols=342 Identities=16% Similarity=0.183 Sum_probs=298.4
Q ss_pred ceeeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHH---------HHh
Q 014285 63 FWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVR---------EAC 133 (427)
Q Consensus 63 ~~~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~---------~~~ 133 (427)
..|||++|+++.+++|+ +...++.++|+|+||+|++||||+.+.+. ... ..++ .+.
T Consensus 8 ~~mkI~~i~~~~v~~p~---------~~~~~~~~~V~v~td~G~~G~GE~~~~~~----~~~--~~~~~~~~~~~~~~l~ 72 (394)
T 3mkc_A 8 AVAPIKSIEFIPVNYQA---------SNWSQNTVVVKVTDENGVYGLGEADGSPD----AIL--AYANIETEHKWLTNIT 72 (394)
T ss_dssp TCCCEEEEEEEEEEEC-------------CEEEEEEEEEETTSCEEEEEECSCHH----HHH--HHHTCCCCBTTBCCTT
T ss_pred CCCeEEEEEEEEEecCC---------CCCCccEEEEEEEECCCCeEEEEecCcHH----HHH--HHHhcccchhhHHHHH
Confidence 34999999999999997 23457889999999999999999975321 111 1122 278
Q ss_pred hHhcCCCCCCHHHHHHHHHHHC----CCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeec--C-C--
Q 014285 134 QFLRQSPPTTLNFALDEIARIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIP--A-V-- 203 (427)
Q Consensus 134 ~~l~g~~~~~~~~~~~~l~~~~----~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~--~-~-- 203 (427)
|.|+|+++.+++.+|+.|++.. .+...+++++|||||||||+||.+|+|||+||||. ++++|+|++++ . .
T Consensus 73 p~liG~dp~~~e~~~~~l~~~~~~~g~~g~~~~A~said~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~s~~~~~~~~~ 152 (394)
T 3mkc_A 73 EKAIGRLPIEINAIWDAMYDATQWQGMRGLGMFALSGIDMALYDLAGKQLGVPAYQLLGGTNKDKVHPYLTLYPAIPVDA 152 (394)
T ss_dssp TTTTTSCTTCHHHHHHHHHHHTHHHHSSTHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSEECCEEECCCSCC-CC
T ss_pred HHhCCCChhHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHhHhHcCCcHHHHcCCCcCCeeEEEEecCCcCCCCc
Confidence 9999999999999999998642 12334679999999999999999999999999997 68999998876 2 2
Q ss_pred CHH----HHHHHHHHHhhcCCcEEEE-ecc---CCchhhHHHHHHHHH-hCCCcEEEEeCCCCC-CHHHHHHHHHHhhhC
Q 014285 204 SPA----EASELASKYCKLGFSTLKL-NVG---RNITADFDVLQAIHA-VHPHCSFILDANEGY-TSEEAVEVLGKLNDM 273 (427)
Q Consensus 204 ~~~----~~~~~~~~~~~~Gf~~iKl-KiG---~~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~-s~~~A~~~l~~L~~~ 273 (427)
+++ ++.+.+++++++||++||+ |+| .++++|++++++||+ .++++.|+||+|++| ++++|++++++|+++
T Consensus 153 ~~~~~~~~~~~~a~~~~~~G~~~~K~~k~g~~~~~~~~d~e~v~avR~a~G~d~~l~vDaN~~~~~~~~A~~~~~~L~~~ 232 (394)
T 3mkc_A 153 SLDVAIKGYAPLLEKAKAHNIRAVKVCVPIKADWSTKEVAYYLRELRGILGHDTDMMVDYLYRFTDWYEVARLLNSIEDL 232 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSEEEEECCTTCCCCHHHHHHHHHHHHHHHCSSSEEEEECTTCCCCHHHHHHHHHHTGGG
T ss_pred chhhhHHHHHHHHHHHHHcCCCEEEeCccCCCccCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCCHHHHHHHHHHhhhc
Confidence 344 6677888999999999999 999 578999999999999 589999999999999 999999999999999
Q ss_pred CCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHH
Q 014285 274 GVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRK 352 (427)
Q Consensus 274 ~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~ 352 (427)
++ .|||||++++|++++++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|++
T Consensus 233 ~i--~~iEeP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~~~~ia~~A~~ 306 (394)
T 3mkc_A 233 EL--YFAEATLQHDDLSGHAKLVE----NTRSRICGAEMSTTRFEAEEWITKGKVHLLQSDYNRCGGLTELRRITEMATA 306 (394)
T ss_dssp CC--SEEESCSCTTCHHHHHHHHH----HCSSCBEECTTCCHHHHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHH
T ss_pred CC--eEEECCCCchhHHHHHHHHh----hCCCCEEeCCCCCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHH
Confidence 97 49999999999999999986 68999999999999999999999999999999999997 9999999999999
Q ss_pred cCCcEEEcccCchhHHHHHHHHHHhhcCCcceeccCCCc----ccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 353 SGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPF----LLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 353 ~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~~~p~----~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+|+++++|++ ||+|++++++|++++++|+.+.|++.+. .+.++++.+++.++||++.+|++||||+|+|+++|
T Consensus 307 ~gi~~~~h~~-~s~i~~aa~~hlaaa~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~l 383 (394)
T 3mkc_A 307 NNVQVMPHNW-KTGITSAAAIHYQFAVGNAPYFEYVHPEFCDGELRKYLVTPEAELVDGGFAKPTAPGLGIDLNQEFL 383 (394)
T ss_dssp TTCEECCCCC-SCHHHHHHHHHHHHHTCCSSCCEECCGGGCCCHHHHHSEECCCCCBTTBEECCCSSBTCCEECHHHH
T ss_pred cCCEEeecCC-CcHHHHHHHHHHHHhCCCceeEEeeccccccchhHHhhccCCCcccCCEEECCCCCCCCceeCHHHH
Confidence 9999999997 9999999999999999999998887653 23456677788899999999999999999999875
|
| >3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-67 Score=533.50 Aligned_cols=340 Identities=15% Similarity=0.171 Sum_probs=301.2
Q ss_pred ceeeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHH-HhhHhcCCCC
Q 014285 63 FWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVRE-ACQFLRQSPP 141 (427)
Q Consensus 63 ~~~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~-~~~~l~g~~~ 141 (427)
..||||+|+.+.++- .++.++|||+||+|++||||+.+.. .. ......+++ +.|.|+|+++
T Consensus 15 ~~mkIt~v~~~~~~~--------------~~~~~~V~v~td~G~~G~GE~~~~~--~~--~~~~~~i~~~l~p~LiG~dp 76 (418)
T 3r4e_A 15 SHMKITAARVIITCP--------------GRNFVTLKIETDQGVYGIGDATLNG--RE--LSVVAYLQEHVAPCLIGMDP 76 (418)
T ss_dssp CCCCEEEEEEEEECS--------------SSCEEEEEEEETTSCEEEEECCCTT--CH--HHHHHHHHHTHHHHHTTSCT
T ss_pred CCCEEEEEEEEEEcC--------------CCcEEEEEEEECCCCEEEEeccCCC--Ch--HHHHHHHHHHHHHHhcCCCh
Confidence 349999999875421 1367999999999999999986532 11 122333555 8999999999
Q ss_pred CCHHHHHHHHHHHC--C-CChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhh
Q 014285 142 TTLNFALDEIARIL--P-GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCK 217 (427)
Q Consensus 142 ~~~~~~~~~l~~~~--~-g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~ 217 (427)
.+++.+|+.|++.. . |...+++++|||||||||+||.+|+|||+||||. +++||+|.+++..+++++.++++++++
T Consensus 77 ~~ie~l~~~~~~~~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~e~~~~~a~~~~~ 156 (418)
T 3r4e_A 77 RRIEDIWQYVYRGAYWRRGPVTMRAIAAVDMALWDIKAKMAGMPLYQLLGGRSRDGIMVYGHANGSDIAETVEAVGHYID 156 (418)
T ss_dssp TCHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHTCCSCSSEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHhHhHcCCcHHHHhCCccCCeeeEEEeCCCCCHHHHHHHHHHHHH
Confidence 99999999998753 2 2234679999999999999999999999999997 789999998888899999999999999
Q ss_pred cCCcEEEEeccCC---------------------------------chhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHH
Q 014285 218 LGFSTLKLNVGRN---------------------------------ITADFDVLQAIHA-VHPHCSFILDANEGYTSEEA 263 (427)
Q Consensus 218 ~Gf~~iKlKiG~~---------------------------------~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A 263 (427)
+||++||+|+|.. ++.|++++++||+ .++++.|+||+|++|++++|
T Consensus 157 ~Gf~~~K~k~G~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDaN~~~~~~~A 236 (418)
T 3r4e_A 157 MGYKAIRAQTGVPGIKDAYGVGRGKLYYEPADASLPSVTGWDTRKALNYVPKLFEELRKTYGFDHHLLHDGHHRYTPQEA 236 (418)
T ss_dssp TTCSEEEEEECCTTC------------------CCCCEEEECHHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHH
T ss_pred cCCCEEEEecCCccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHH
Confidence 9999999999841 4678999999999 58999999999999999999
Q ss_pred HHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHH
Q 014285 264 VEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLG 342 (427)
Q Consensus 264 ~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~ 342 (427)
++++++|+++++ .|||||++++|++++++|++ ++++||++||++.+..+++++++.+++|++|+|++++| +++
T Consensus 237 ~~~~~~L~~~~i--~~iEqP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~a~d~v~~k~~~~GGit~ 310 (418)
T 3r4e_A 237 ANLGKMLEPYQL--FWLEDCTPAENQEAFRLVRQ----HTVTPLAVGEIFNTIWDAKDLIQNQLIDYIRATVVGAGGLTH 310 (418)
T ss_dssp HHHHHHHGGGCC--SEEESCSCCSSGGGGHHHHH----HCCSCEEECTTCCSGGGTHHHHHTTCCSEECCCTTTTTHHHH
T ss_pred HHHHHHHHhhCC--CEEECCCCccCHHHHHHHHh----cCCCCEEEcCCcCCHHHHHHHHHcCCCCeEecCccccCCHHH
Confidence 999999999997 49999999999999999986 68999999999999999999999999999999999997 999
Q ss_pred HHHHHHHHHHcCCcEEEcccC-chhHHHHHHHHHHhhcCCcceeccCCCcccccCCCCCceeeeCcEEecCCCCCccccc
Q 014285 343 TLQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFL 421 (427)
Q Consensus 343 ~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hlaaal~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~ 421 (427)
+++++++|+++|+++++|++. +|+|+++|++|++++++|+.+.|++.+....++++.+++.++||++.+|++||||+|+
T Consensus 311 ~~~ia~~A~~~gi~~~~h~~~~~s~ig~aA~~hlaaa~pn~~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGvel 390 (418)
T 3r4e_A 311 LRRIADLASLYQVRTGCHGPTDLSPVTMGCALHFDTWVPNFGIQEYMRHTEETDAVFPHDYWFEKGELFVGETPGHGVDI 390 (418)
T ss_dssp HHHHHHHHHHTTCEEEECCCTTSCHHHHHHHHHHHHHCTTEEEEECCCCCHHHHHHSCBSEEEETTEEEECCCSBSSBCC
T ss_pred HHHHHHHHHHcCCEEeecCCCCccHHHHHHHHHHHHhCCCcceEeecCcchhhHhhcCCCceeeCCEEECCCCCCCCCcc
Confidence 999999999999999999997 7999999999999999999888887654455677888899999999999999999999
Q ss_pred CCCcC
Q 014285 422 KWTIV 426 (427)
Q Consensus 422 d~~~v 426 (427)
|+++|
T Consensus 391 d~~~l 395 (418)
T 3r4e_A 391 DEELA 395 (418)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 99875
|
| >3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-67 Score=534.62 Aligned_cols=341 Identities=18% Similarity=0.216 Sum_probs=297.4
Q ss_pred eeeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHH---------Hhh
Q 014285 64 WVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVRE---------ACQ 134 (427)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~---------~~~ 134 (427)
.|||++|+++.+++|+ +...++.++|+|+||+|++||||+.+.+ .... ..++. +.|
T Consensus 4 ~mkI~~i~~~~v~~p~---------~~~~~~~~~V~v~td~G~~G~GE~~~~~----~~~~--~~~~~~~~~~~~~~l~p 68 (394)
T 3mqt_A 4 GANIVSVEFIPVNVAA---------TNWSENTVIVKVTDENGVYGLGEADGPP----ECMK--AFSEIENEHKWLNNIKE 68 (394)
T ss_dssp -CCEEEEEEEEEECC--------------CEEEEEEEEETTSCEEEEEECSCH----HHHH--HHHTCCCCBTTBCCGGG
T ss_pred CCeEeEEEEEEEecCC---------CCCCccEEEEEEEECCCCEEEEEECCcH----HHHH--HHHhcccchhhHHHHHH
Confidence 3999999999999997 2345789999999999999999997532 1111 11222 789
Q ss_pred HhcCCCCCCHHHHHHHHHHHC--CC--ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeec--C-C--C
Q 014285 135 FLRQSPPTTLNFALDEIARIL--PG--SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIP--A-V--S 204 (427)
Q Consensus 135 ~l~g~~~~~~~~~~~~l~~~~--~g--~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~--~-~--~ 204 (427)
.|+|++|.+++.+|+.|++.. .| ...+++++|||||||||+||.+|+|||+||||. ++++|+|++++ . . +
T Consensus 69 ~liG~dp~~~e~~~~~l~~~~~~~g~~g~~~~A~said~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~s~~~~~~~~~~ 148 (394)
T 3mqt_A 69 AVIGRDPLEFRANYNRMYDTTKWIGMRGLGLFAISGIDMALYDLAGKQLGVPAYKLMGGAQKAQLTPYFTLYPSVAADAT 148 (394)
T ss_dssp GTTTSCTTCHHHHHHHHHHHTTTTCSSBHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCCSSSBCCEEECCCCCCTTCC
T ss_pred HhCCCChhHHHHHHHHHHHhhhhhCCccHHHHHHHHHHHHHHHHHHhHcCCcHHHHcCCCCCCeEEEEEEecCCCCCCcc
Confidence 999999999999999998752 22 234679999999999999999999999999997 68999999876 3 2 3
Q ss_pred HH----HHHHHHHHHhhcCCcEEEE-ecc---CCchhhHHHHHHHHH-hCCCcEEEEeCCCCC-CHHHHHHHHHHhhhCC
Q 014285 205 PA----EASELASKYCKLGFSTLKL-NVG---RNITADFDVLQAIHA-VHPHCSFILDANEGY-TSEEAVEVLGKLNDMG 274 (427)
Q Consensus 205 ~~----~~~~~~~~~~~~Gf~~iKl-KiG---~~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~-s~~~A~~~l~~L~~~~ 274 (427)
++ ++.+.+++++++||++||+ |+| .++++|++++++||+ .++++.|+||+|++| ++++|+++++.|++++
T Consensus 149 ~~~~i~~~~~~a~~~~~~G~~~~K~~k~g~~~~~~~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~~A~~~~~~L~~~~ 228 (394)
T 3mqt_A 149 LSEIVEAYKPLIAKAKERGAKAVKVCIIPNDKVSDKEIVAYLRELREVIGWDMDMMVDCLYRWTDWQKARWTFRQLEDID 228 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEECCCCTTSCHHHHHHHHHHHHHHHCSSSEEEEECTTCCSCHHHHHHHHHHTGGGC
T ss_pred hhhhHHHHHHHHHHHHHcCCCEEEecccCCCccCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHHHHHhhcC
Confidence 44 5667888899999999999 999 578999999999999 589999999999999 9999999999999999
Q ss_pred CCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHc
Q 014285 275 VIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKS 353 (427)
Q Consensus 275 l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~ 353 (427)
+ .|||||++++|++++++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++
T Consensus 229 i--~~iEeP~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~ 302 (394)
T 3mqt_A 229 L--YFIEACLQHDDLIGHQKLAA----AINTRLCGAEMSTTRFEAQEWLEKTGISVVQSDYNRCGGVTELLRIMDICEHH 302 (394)
T ss_dssp C--SEEESCSCTTCHHHHHHHHH----HSSSEEEECTTCCHHHHHHHHHHHHCCSEECCCTTTSSCHHHHHHHHHHHHHH
T ss_pred C--eEEECCCCcccHHHHHHHHh----hCCCCEEeCCCcCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHc
Confidence 7 49999999999999999986 68999999999999999999999999999999999997 99999999999999
Q ss_pred CCcEEEcccCchhHHHHHHHHHHhhcCCcceeccCCCc----ccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 354 GLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPF----LLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 354 gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~~~p~----~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
|+++++|++ ||+|+++|++|++++++|+.++|++.+. .+.++++.+++.++||++.+|++||||+|+|+++|
T Consensus 303 gi~~~~h~~-~s~i~~aa~~hlaaa~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l 378 (394)
T 3mqt_A 303 NAQLMPHNW-KTGITAAAARHFGIVCHISEYVEYLHPDFWNGTLTQQLTLNEPKIIDGAIEVSDKPGLGIELNIEFV 378 (394)
T ss_dssp TCEECCCCC-SCHHHHHHHHHHHHHCTTCSCCEECCTTTCCCHHHHHTBSSCCCCBTTBBCCCCCSBTCCCBCHHHH
T ss_pred CCEEeccCC-CchHHHHHHHHHHHhCCCCceEEecCcccccchhHHhhccCCCcccCCEEECCCCCCCCCCcCHHHH
Confidence 999999997 9999999999999999999998887652 23456777888999999999999999999999865
|
| >3ijl_A Muconate cycloisomerase; enolase superfamily, dipeptide epimerase, L-Pro-D-Glu, nonpr binding; HET: DGL; 1.50A {Bacteroides thetaiotaomicron} PDB: 3iji_A* 3ijq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-67 Score=524.50 Aligned_cols=331 Identities=23% Similarity=0.382 Sum_probs=293.7
Q ss_pred EEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHH-HHHHHHHHhhHhcCC-CCCCHHH
Q 014285 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTK-ALVKVREACQFLRQS-PPTTLNF 146 (427)
Q Consensus 69 ~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~-~~~~~~~~~~~l~g~-~~~~~~~ 146 (427)
+++++++++||++||.++.++.+.++.++|+| |++|++|||||.+.++++ ++.+ ....++.+. |.|+ ++.+++.
T Consensus 2 ~i~~~~~~lpl~~p~~~s~g~~~~~~~~~V~v-td~G~~G~GE~~~~~~~g-e~~~~~~~~l~~~~--l~g~~d~~~~e~ 77 (338)
T 3ijl_A 2 KMTFFPYELKLRHVFTVATYSRTTTPDVQVEI-EYEGVTGYGEASMPPYLG-ETVESVMNFLKKVN--LEQFSDPFQLED 77 (338)
T ss_dssp CEEEEECCEEEEEEEEETTEEEEEECEEEEEE-EETTEEEEEEEECCGGGS-CCHHHHHHHHTTCC--CTTCCCTTCHHH
T ss_pred eEEEEEEEEeccCcEEeeCcEEEEeeEEEEEE-EeCCcEEEEeeeCCCCCC-CCHHHHHHHHHHHH--hcCCCCccCHHH
Confidence 46789999999999999999999999999999 899999999999876543 3322 222233322 7888 9999999
Q ss_pred HHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeee-eeecCCCHHHHHHHHHHHhhcCCcEEEE
Q 014285 147 ALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTA-ITIPAVSPAEASELASKYCKLGFSTLKL 225 (427)
Q Consensus 147 ~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~-~~i~~~~~~~~~~~~~~~~~~Gf~~iKl 225 (427)
+|+.|++...+ .+++++||||||||++||..|+|||+||||.++++|.| ++++..+++++.++++++++ ||++||+
T Consensus 78 ~~~~l~~~~~~--~~~A~said~ALwDl~gk~~g~Pl~~LlGg~~~~v~~~~~~~~~~~~e~~~~~a~~~~~-g~~~~K~ 154 (338)
T 3ijl_A 78 ILSYVDSLSPK--DTAAKAAVDIALHDLVGKLLGAPWYKIWGLNKEKTPSTTFTIGIDTPDVVRAKTKECAG-LFNILKV 154 (338)
T ss_dssp HHHHHHHTCSC--CHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCGGGCCBBCCBCCCCCHHHHHHHHHHHHT-TCSSEEE
T ss_pred HHHHHHHhccC--CHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCcceEEEEEeCCCHHHHHHHHHHHHh-cccEEEE
Confidence 99999875433 36899999999999999999999999999998888864 56788899999999988866 8999999
Q ss_pred eccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCC-HHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccC
Q 014285 226 NVGRNITADFDVLQAIHAVHPHCSFILDANEGYT-SEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG 304 (427)
Q Consensus 226 KiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s-~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~ 304 (427)
|+|. ++|++++++||+..+ ..||||||++|+ +++|++++++|+++++ .|||||++++|+++|++|++ +++
T Consensus 155 Kvg~--~~d~~~v~avR~~~~-~~l~vDaN~~~t~~~~A~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~ 225 (338)
T 3ijl_A 155 KLGR--DNDKEMIETIRSVTD-LPIAVDANQGWKDRQYALDMIHWLKEKGI--VMIEQPMPKEQLDDIAWVTQ----QSP 225 (338)
T ss_dssp ECSS--SCHHHHHHHHHTTCC-CCEEEECTTCCCCHHHHHHHHHHHHHTTE--EEEECCSCTTCHHHHHHHHH----TCS
T ss_pred ecCc--HHHHHHHHHHHhhcC-CcEEEECcCCCCCHHHHHHHHHHHhhCCC--CEEECCCCCCcHHHHHHHHh----cCC
Confidence 9997 479999999999764 699999999995 9999999999999987 59999999999999999986 789
Q ss_pred CeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcc
Q 014285 305 ISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIK 383 (427)
Q Consensus 305 iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~ 383 (427)
+|||+||++.+..++++++ +++|++|+|++++| ++++++++++|+++|+++++||++||+|++++++|+++.+ .
T Consensus 226 ipIa~dE~~~~~~~~~~~~--~a~d~i~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i~~aa~~~la~~~---~ 300 (338)
T 3ijl_A 226 LPVFADESLQRLGDVAALK--GAFTGINIKLMKCTGMREAWKMVTLAHALGMRVMVGCMTETSCAISAASQFSPAV---D 300 (338)
T ss_dssp SCEEESTTCCSGGGTGGGB--TTBSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCSCCHHHHHHHHTTGGGC---S
T ss_pred CCEEECCCCCCHHHHHHHH--hhCCEEEecccccCCHHHHHHHHHHHHHcCCEEEecCCcccHHHHHHHHHHhccC---C
Confidence 9999999999999998876 78999999999997 9999999999999999999999999999999999999865 4
Q ss_pred eeccCCCcccccCCCCCceeeeCcEEecCCCCCccccc
Q 014285 384 YVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFL 421 (427)
Q Consensus 384 ~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~ 421 (427)
+.++++++.+.+|++.+ +.++||++.+|++||||||+
T Consensus 301 ~~~l~~~~~~~~d~~~~-~~~~~G~i~~p~~PGlGv~l 337 (338)
T 3ijl_A 301 FADLDGNLLISNDRFKG-VEVVNGKITLNDLPGIGVMK 337 (338)
T ss_dssp EECCCGGGGBSCCCCBC-CEEETTEEECCSCSBTCCBC
T ss_pred cccccchhhhhhcccCC-ceeECCEEECCCCCccceee
Confidence 56788888778888775 88999999999999999986
|
| >3va8_A Probable dehydratase; enolase, magnesium binding site, lyase; 2.00A {Gibberella zeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-66 Score=534.42 Aligned_cols=346 Identities=17% Similarity=0.214 Sum_probs=303.4
Q ss_pred ceeeEEEEEEEEEEeeccccccccceeEEe-eeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCC
Q 014285 63 FWVDVQRAEGRELNVALSAPLSLGLSSVEN-VENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPP 141 (427)
Q Consensus 63 ~~~~I~~i~~~~~~~pl~~p~~~a~~~~~~-~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~ 141 (427)
-.|||++|+++++++| ..|+.++.+.... ...++|+|+||+ ++||||+... + .....++.+.|.|+|+++
T Consensus 25 ~~mkIt~i~~~~v~~p-~~p~~~~~g~~~~~~~~~~V~v~td~-~~G~GE~~g~-----~--~~~~~i~~l~p~LiG~d~ 95 (445)
T 3va8_A 25 QRSIIKEIVITPVAFH-DMPLLNSVGVHEPFALRSIIEIITED-SYGLGESYGD-----S--AHLDRLQKAADKIKGLSV 95 (445)
T ss_dssp HHTBCCEEEEEEEEEE-CCCBEETTEECCSEEEEEEEEEECSS-CEEEEEEECC-----H--HHHHHHHHHHHHHTTSBT
T ss_pred CCCEEEEEEEEEEecC-CcccccccCcccCceeEEEEEEEECC-CEEEEecCCc-----H--HHHHHHHHHHHHHCCCCh
Confidence 3499999999999999 8899998876533 567899999999 9999999531 2 122335678999999999
Q ss_pred CCHHHHHHHHHHHCCCC----------------hhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeec---
Q 014285 142 TTLNFALDEIARILPGS----------------EFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIP--- 201 (427)
Q Consensus 142 ~~~~~~~~~l~~~~~g~----------------~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~--- 201 (427)
.+++.+|+.|++.+.+. ...++++|||+|||||+||.+|+|||+||||. +++||+|.++.
T Consensus 96 ~~ie~i~~~l~~~~~~~~~~~~~G~~G~~~~~~~~~~A~sAiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~~a~~~y~~ 175 (445)
T 3va8_A 96 YSTNVIYQRCVESLRNDTNTGGDGMGGMVVTASVADKVFSPFEVACLDLQGKLAGISVSDLLGGRVRDSVQYSAYLFYKW 175 (445)
T ss_dssp TCHHHHHHHHHHHTTTCCC--CCSSTTSSCCSCHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSSSEEEBCEEEECBC
T ss_pred hHHHHHHHHHHHhhhcccccccccccCccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeEEEeeeecccc
Confidence 99999999998864221 34579999999999999999999999999997 78999965431
Q ss_pred -------------CCCHHHHHHHHHHHhhc-CCcEEEEeccC-CchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHH
Q 014285 202 -------------AVSPAEASELASKYCKL-GFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEV 266 (427)
Q Consensus 202 -------------~~~~~~~~~~~~~~~~~-Gf~~iKlKiG~-~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~ 266 (427)
..+++++.+++++++++ ||++||+|+|. ++++|++++++||+..|++.|+||||++|++++|+++
T Consensus 176 ~~~~g~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~~~~~Di~~v~avRea~~~~~L~vDaN~~w~~~~Ai~~ 255 (445)
T 3va8_A 176 GGHPGDEDDEYGPALDPEGVVKQAKKIIDEYGFKAIKLKGGVFPPADEVAAIKALHKAFPGVPLRLDPNAAWTVETSKWV 255 (445)
T ss_dssp SSSTTSCCCTTCCBCSHHHHHHHHHHHHHHHCCSCEEEECSSSCHHHHHHHHHHHHHHSTTCCEEEECTTCBCHHHHHHH
T ss_pred cccccccccccccCCCHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHHHHHHHhCCCCcEeeeCCCCCCHHHHHHH
Confidence 25899999999998875 99999999996 7899999999999966999999999999999999999
Q ss_pred HHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHH
Q 014285 267 LGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQ 345 (427)
Q Consensus 267 l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~ 345 (427)
+++|+++ + .|||||++ |++++++|++ ++++|||+||++.+..+++++++.+++|++|+|++++| ++++++
T Consensus 256 ~~~L~~~-l--~~iEeP~~--d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~div~~d~~~~GGitea~k 326 (445)
T 3va8_A 256 AKELEGI-V--EYLEDPAG--EIEGMAAVAK----EASMPLATNMAVVAFDHLPPSILQDAVQVILSDHHFWGGLRKSQT 326 (445)
T ss_dssp HHHTTTT-C--SEEESCBS--HHHHHHHHHT----TCSSCEEESSSCCSGGGHHHHHHTTCCSEEEECHHHHTSHHHHHH
T ss_pred HHHHhhh-c--CeEeecCc--CHHHHHHHHH----cCCCCEEeCCccCCHHHHHHHHHcCCCCEEEecchhcCCHHHHHH
Confidence 9999998 7 59999995 7999999985 78999999999999999999999999999999999997 999999
Q ss_pred HHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCccee-ccCCCcccc-cCCC-CCceeeeCcEEecCCCCCcccccC
Q 014285 346 IIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYV-NLNTPFLLS-EDPF-VGGCEVSGAIYNFTNARGQGGFLK 422 (427)
Q Consensus 346 ~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~-e~~~p~~~~-~~~~-~~~~~~~~G~i~~p~~pGlGve~d 422 (427)
++++|+++|+++++|++.|++|+++|++|++++++|+.+. +.+.|+... +|++ .+++.++||++.+|++||||||+|
T Consensus 327 ia~lA~~~gv~v~~h~~~e~~I~~aa~~hlaaa~p~~~~~~d~~~~~~~~~~d~~~~~~~~~~~G~i~vp~~PGLGveld 406 (445)
T 3va8_A 327 LASICATWGLRLSMHSNSHLGISLAAMTHLASATPNLDYACDTHWPWKRRDEDVVIEGALKWKDGGVIVPSGPGLGVELD 406 (445)
T ss_dssp HHHHHHHHTCEEEECCCSCCHHHHHHHHHHHHTCTTBCSCBCCCGGGSCTTCCSBCTTSCCEETTEEECCCSSBTSCCBC
T ss_pred HHHHHHHcCCEEEEeCCcccHHHHHHHHHHHHhCCCCceeeeccchhhhcccccccCCCceEECCEEECCCCCcCCCccC
Confidence 9999999999999999999999999999999999998775 444455432 3554 568899999999999999999999
Q ss_pred CCcC
Q 014285 423 WTIV 426 (427)
Q Consensus 423 ~~~v 426 (427)
+++|
T Consensus 407 ~~~l 410 (445)
T 3va8_A 407 RERL 410 (445)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
|
| >3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-66 Score=533.54 Aligned_cols=339 Identities=14% Similarity=0.176 Sum_probs=300.5
Q ss_pred eeeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHH-HhhHhcCCCCC
Q 014285 64 WVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVRE-ACQFLRQSPPT 142 (427)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~-~~~~l~g~~~~ 142 (427)
.|||++|+++.++- .++.++|||+||+|++||||+.+.. . .......+++ +.|.|+|+++.
T Consensus 23 ~mkIt~v~~~~~~~--------------~~~~v~V~v~td~G~~G~GE~~~~~--~--~~~~~~~i~~~l~p~LiG~dp~ 84 (425)
T 3vcn_A 23 MLKIIDAKVIVTCP--------------GRNFVTLKITTEDGITGVGDATLNG--R--ELSVVSFLQDHMVPSLIGRDAH 84 (425)
T ss_dssp CCBEEEEEEEEECS--------------SSCEEEEEEEETTSCEEEEECCCTT--C--HHHHHHHHHHTTHHHHTTCBTT
T ss_pred CCEEEEEEEEEEcC--------------CCcEEEEEEEECCCCEEEEeccCCC--C--hHHHHHHHHHHHHHHhCCCChh
Confidence 39999999875421 1367999999999999999986532 1 1122333555 88999999999
Q ss_pred CHHHHHHHHHHHC--C-CChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhhc
Q 014285 143 TLNFALDEIARIL--P-GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKL 218 (427)
Q Consensus 143 ~~~~~~~~l~~~~--~-g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~ 218 (427)
+++.+|+.|++.. . |...+++++|||||||||+||.+|+|||+||||. +++||+|.+++..+++++.+++++++++
T Consensus 85 ~ie~i~~~~~~~~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~e~~~~~a~~~~~~ 164 (425)
T 3vcn_A 85 QIEDIWQFFYRGSYWRGGPVAMTALAAVDMALWDIKGKVAGLPVYQLLGGACRTGVTVYGHANGETIEDTIAEAVKYKAM 164 (425)
T ss_dssp CHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHHHTSBGGGGTTCCSSSSEEEEEEEEESSHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhcccCCchHHHHHHHHHHHHHHHHhHHHcCCcHHHHcCCCCCCeeeEEEeCCCCCHHHHHHHHHHHHHc
Confidence 9999999998753 2 2234679999999999999999999999999997 7899999988888999999999999999
Q ss_pred CCcEEEEeccC----------------C-----------------chhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHH
Q 014285 219 GFSTLKLNVGR----------------N-----------------ITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAV 264 (427)
Q Consensus 219 Gf~~iKlKiG~----------------~-----------------~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~ 264 (427)
||++||+|+|. + ++.|++++++||+ .++++.|+||+|++|++++|+
T Consensus 165 Gf~~iKlKvg~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~d~~~~~~~d~e~v~avR~a~G~d~~l~vDaN~~~~~~~A~ 244 (425)
T 3vcn_A 165 GYKAIRLQTGVPGLASTYGVSKDKMFYEPADNDLPTENIWSTAKYLNSVPKLFERAREVLGWDVHLLHDVHHRLTPIEAA 244 (425)
T ss_dssp TCSEEEEEECCTTCSCCTTCSSCSSCCCCCCBSSCCEEEECHHHHHTTTHHHHHHHHHHHCSSSEEEEECTTCCCHHHHH
T ss_pred CCCEEEEeecCccccccccccccccccCcccccccccccccchhHHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHH
Confidence 99999999984 0 4578999999999 589999999999999999999
Q ss_pred HHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHH
Q 014285 265 EVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGT 343 (427)
Q Consensus 265 ~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~ 343 (427)
+++++|+++++ .|||||++++|++++++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++
T Consensus 245 ~~~~~L~~~~i--~~iEqP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GGit~~ 318 (425)
T 3vcn_A 245 RLGKDLEPYRL--FWLEDSVPAENQAGFRLIRQ----HTTTPLAVGEIFAHVWDAKQLIEEQLIDYLRATVLHAGGITNL 318 (425)
T ss_dssp HHHHHHGGGCC--SEEECCSCCSSTTHHHHHHH----HCCSCEEECTTCCSGGGTHHHHHTTCCSEECCCTTTTTHHHHH
T ss_pred HHHHHHHhcCC--CEEECCCChhhHHHHHHHHh----cCCCCEEeCCCcCCHHHHHHHHHcCCCCeEecChhhcCCHHHH
Confidence 99999999997 49999999999999999986 68999999999999999999999999999999999997 9999
Q ss_pred HHHHHHHHHcCCcEEEcccC-chhHHHHHHHHHHhhcCCcceeccCCCcccccCCCCCceeeeCcEEecCCCCCcccccC
Q 014285 344 LQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLK 422 (427)
Q Consensus 344 ~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hlaaal~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d 422 (427)
++++++|+++|+++++|++. +|+|+++|++|++++++|+.+.|++.+....++++.+++.++||++.+|++||||||+|
T Consensus 319 ~~ia~~A~~~gi~~~~h~~~~~s~ig~aA~~hlaaa~pn~~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGveld 398 (425)
T 3vcn_A 319 KKIAAFADLHHVKTGCHGATDLSPVTMAAALHFDMSITNFGLQEYMRHTPETDAVFPHAYTFSDGMLHPGDKPGLGVDID 398 (425)
T ss_dssp HHHHHHHGGGTCEECCCCCTTSCHHHHHHHHHHHHTCSCBCCEECCCCCHHHHHHSCBCCEEETTEEECCSSSBTSBCCC
T ss_pred HHHHHHHHHcCCEEeeccCCcccHHHHHHHHHHHHhCCCCceEeecCcchhhhhhcCCCceeeCCEEECCCCCCCCCcCC
Confidence 99999999999999999997 79999999999999999998888876554556778888999999999999999999999
Q ss_pred CCcC
Q 014285 423 WTIV 426 (427)
Q Consensus 423 ~~~v 426 (427)
+++|
T Consensus 399 ~~~l 402 (425)
T 3vcn_A 399 EDLA 402 (425)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
|
| >3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-67 Score=534.20 Aligned_cols=340 Identities=15% Similarity=0.175 Sum_probs=300.4
Q ss_pred eeeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHH-HhhHhcCCCCC
Q 014285 64 WVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVRE-ACQFLRQSPPT 142 (427)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~-~~~~l~g~~~~ 142 (427)
.||||+|+++.++-. ..+.++|||+||+|++||||+.+.. +.+ .....+++ +.|.|+|+++.
T Consensus 26 ~mkIt~v~~~~~~~~-------------~~~~v~V~v~td~Gi~G~GE~~~~~--~~~--~~~~~i~~~l~p~LiG~dp~ 88 (422)
T 3tji_A 26 PVIIKNIECFITRPD-------------RHNLVTVRVTTEQGITGHGCATFQQ--RPL--AVKTLVDEYLQPLMIGRDAN 88 (422)
T ss_dssp CCBEEEEEEEEECSS-------------SSCEEEEEEEETTSCCEEEECCCTT--SHH--HHHHHHHHTHHHHHTTSBTT
T ss_pred CcEEEEEEEEEEcCC-------------CccEEEEEEEECCCCEEEEeccCCC--CHH--HHHHHHHHHHHHHhCCCCcc
Confidence 399999999765210 1267999999999999999997532 222 22233555 89999999999
Q ss_pred CHHHHHHHHHHHC--C-CChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhhc
Q 014285 143 TLNFALDEIARIL--P-GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKL 218 (427)
Q Consensus 143 ~~~~~~~~l~~~~--~-g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~ 218 (427)
+++.+|+.|++.. . |...+++++|||||||||+||.+|+|||+||||. ++++|+|.+++..+++++.+++++++++
T Consensus 89 ~ie~~~~~l~~~~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~e~~~~~a~~~~~~ 168 (422)
T 3tji_A 89 NIEDLWQMMNVNAYWRNGPLMNNAISGVDMALWDIKGQLAGMPLYQLFGGKSRDAIPAYSHASGETLEALFASVDALIAQ 168 (422)
T ss_dssp CHHHHHHHHHHTTSSCCSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSSSCEEEEEEEEESSHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHhCCcHHHHcCCCCCCeEEEEEEeCCCCHHHHHHHHHHHHHc
Confidence 9999999998742 2 2234679999999999999999999999999997 7899999988888999999999999999
Q ss_pred CCcEEEEeccCC------------------------chhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhC
Q 014285 219 GFSTLKLNVGRN------------------------ITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDM 273 (427)
Q Consensus 219 Gf~~iKlKiG~~------------------------~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~ 273 (427)
||++||+|+|.+ ++.|++++++||+ .++++.|+||+|++|++++|++++++|+++
T Consensus 169 G~~~iKlKvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~v~avR~avG~d~~L~vDaN~~~~~~~A~~~~~~Le~~ 248 (422)
T 3tji_A 169 GYRHIRCQLGFYGGTPSALHAPDNPTPGAWFDQQEYMSNTVEMFHALREKYGWKLHILHDVHERLFPQQAVQLAKQLEPF 248 (422)
T ss_dssp TCSEEEEEESCCCBCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGG
T ss_pred CCCEEEEeeccCCcccccccccccccccccccchhHHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 999999999853 4678999999999 589999999999999999999999999999
Q ss_pred CCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHH
Q 014285 274 GVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRK 352 (427)
Q Consensus 274 ~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~ 352 (427)
++ .|||||++++|++++++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|++
T Consensus 249 ~i--~~iEqP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~ll~~ga~d~v~~k~~~~GGit~~~kia~lA~a 322 (422)
T 3tji_A 249 QP--YFIEDILPPQQSAWLEQVRQ----QSCVPLALGELFNNPAEWHDLIVNRRIDFIRCHVSQIGGITPALKLAHLCQA 322 (422)
T ss_dssp CC--SEEECCSCGGGGGGHHHHHH----HCCCCEEECTTCCSGGGTHHHHHTTCCSEECCCGGGGTSHHHHHHHHHHHHH
T ss_pred CC--CeEECCCChhhHHHHHHHHh----hCCCCEEEeCCcCCHHHHHHHHhcCCCCEEecCccccCCHHHHHHHHHHHHH
Confidence 97 49999999999999999986 68999999999999999999999999999999999997 9999999999999
Q ss_pred cCCcEEEcccC-chhHHHHHHHHHHhhcCCcceeccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 353 SGLHLMIDGMI-ETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 353 ~gi~~~~~s~~-es~ig~~a~~hlaaal~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+|+++++|++. +|+|+++|++|++++++|+.+.|+..+....++++.+++.++||++.+|++||||||+|++++
T Consensus 323 ~gv~v~~h~~~~~s~Ig~aA~~hlaaa~pn~~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~l 397 (422)
T 3tji_A 323 FGVRLAWHGPGDMTPIGVAVNTHLNIHLHNAAIQEFIPRSATTNDVFPGAPEVKEGFVYPPVQPGIGVGFNEALA 397 (422)
T ss_dssp TTCEECCCCCSSSCHHHHHHHHHHHHHCTTBCCEECCCCCHHHHHHSTTCCCCBTTEECCCCSSBSCCCCCHHHH
T ss_pred cCCEEEecCCCCccHHHHHHHHHHHHhCCCCceEeccCcchhhhhccCCCceeECCEEECCCCCcCCCCcCHHHH
Confidence 99999999985 799999999999999999988888765444567778888999999999999999999999865
|
| >2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-66 Score=520.92 Aligned_cols=348 Identities=22% Similarity=0.336 Sum_probs=313.5
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecC--CCCCcchHH-HHHHHHH-HhhHhcCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTK-ALVKVRE-ACQFLRQSP 140 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~--~~~s~~~~~-~~~~~~~-~~~~l~g~~ 140 (427)
|||++++++.+++|++.||.++.++++.++.++|+|+| +|.+||||+.+. |.|+++..+ ....+++ +.|.|+|++
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~t-dG~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~~~l~G~d 79 (369)
T 2zc8_A 1 MRIEAAELRILELPLKFRFETSFGVQTKRTILLLRLFG-EGLEGLGEGVMERLPLYREETVAGARYLLEEVFLPRVLGRD 79 (369)
T ss_dssp CBCCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEE-TTEEEEEECCCBSSCSSSSCBHHHHHHHHHHTHHHHHTTCB
T ss_pred CEEEEEEEEEEeccccCCEEEeeEEEeeCcEEEEEEEE-CCeEEEEEeccCCCCcccCCCHHHHHHHHHHHHHHHHcCCC
Confidence 79999999999999999999999999999999999999 599999999875 556665433 3334555 889999999
Q ss_pred CCCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecC-CCHHHHHHHHHHHhhcC
Q 014285 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPA-VSPAEASELASKYCKLG 219 (427)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~-~~~~~~~~~~~~~~~~G 219 (427)
+.+++.+++.+.. +.|. +++++||||||||++||..|+|||+||||.++++|++++++. .+++++.+.+++++++|
T Consensus 80 ~~~~~~l~~~~~~-~~g~--~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~~~~~~~g~~~~~~~~~~~a~~~~~~G 156 (369)
T 2zc8_A 80 LPNPEALREALAP-FRGN--PMAKAVLEMAFFDLWAKALGRPLWQVLGGVRQAVEVGVSLGIQPSVEDTLRVVERHLEEG 156 (369)
T ss_dssp CSSHHHHHHHHTT-SCSC--HHHHHHHHHHHHHHHHHHTTSBHHHHHTCCCSEEEBCEEECCCSSHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHH-hcCC--hHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceeceEEecCCCCHHHHHHHHHHHHHhh
Confidence 9999998887743 4443 568999999999999999999999999998888898888776 58999999999999999
Q ss_pred CcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhh
Q 014285 220 FSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFA 299 (427)
Q Consensus 220 f~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~ 299 (427)
|+++|+|+|+ ++|++++++||+..|++.|++|+|++|++++ +++++.|+++++ .|||||++++|++++++|++
T Consensus 157 ~~~iKik~~~--~~d~~~v~avr~a~~~~~l~vDan~~~~~~~-~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~~-- 229 (369)
T 2zc8_A 157 YRRIKLKIKP--GWDYEVLKAVREAFPEATLTADANSAYSLAN-LAQLKRLDELRL--DYIEQPLAYDDLLDHAKLQR-- 229 (369)
T ss_dssp CSCEEEECBT--TBSHHHHHHHHHHCTTSCEEEECTTCCCGGG-HHHHHGGGGGCC--SCEECCSCTTCSHHHHHHHH--
T ss_pred hheeeeecCh--hHHHHHHHHHHHHcCCCeEEEecCCCCCHHH-HHHHHHHHhCCC--cEEECCCCcccHHHHHHHHh--
Confidence 9999999974 7899999999995599999999999999999 999999999997 49999999999999999986
Q ss_pred ccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhh
Q 014285 300 RDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAG 378 (427)
Q Consensus 300 r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaa 378 (427)
++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++++++||+|++++++|++ +
T Consensus 230 --~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~hla-a 306 (369)
T 2zc8_A 230 --ELSTPICLDESLTGAEKARKAIELGAGRVFNVKPARLGGHGESLRVHALAESAGIPLWMGGMLEAGVGRAHNLHLA-T 306 (369)
T ss_dssp --HCSSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCCEEECCCCCCHHHHHHHHHHT-T
T ss_pred --hCCCCEEEcCccCCHHHHHHHHHhCCCCEEEEchhhhCCHHHHHHHHHHHHHcCCcEEecCccccHHHHHHHHHHH-c
Confidence 68999999999999999999999999999999999997 9999999999999999999999999999999999999 9
Q ss_pred cCCcce-eccCCC-cccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 379 LGCIKY-VNLNTP-FLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 379 l~~~~~-~e~~~p-~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
++|+.+ .|++.+ ..+.++++.+++.++||++.+|++||||+++|++++
T Consensus 307 ~~~~~~~~e~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 356 (369)
T 2zc8_A 307 LPGFTKPGDVSSASRYWEEDIVEEALEAKDGLMPVPEGVGIGVHLKLPFV 356 (369)
T ss_dssp STTBCSCBSCCCGGGTBSSCSBSSCCCCBTTEEECCCSSBTCCCBCHHHH
T ss_pred CCCCCcccccCCcchhhhhccccCCcEEECCEEECCCCCcCCcccCHHHH
Confidence 999888 788765 245678887888999999999999999999999865
|
| >1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-65 Score=518.08 Aligned_cols=347 Identities=21% Similarity=0.309 Sum_probs=312.6
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecC--CCCCcchHH-HHHHHHH-HhhHhcCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTK-ALVKVRE-ACQFLRQSP 140 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~--~~~s~~~~~-~~~~~~~-~~~~l~g~~ 140 (427)
|||++++++.+++|++.||.++.++++.++.++|+|+|++| +||||+.+. |.|+++..+ ....+++ +.|.|+|++
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~v~v~td~G-~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~~~l~g~d 79 (368)
T 1sjd_A 1 MKLSGVELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAG-EGWGECVTMAGPLYSSEYNDGAEHVLRHYLIPALLAAE 79 (368)
T ss_dssp CCCCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECSSC-EEEEECCCBSSSSSSSCBHHHHHHHHHHTHHHHHHHSS
T ss_pred CEEEEEEEEEEeccccCCeEeeeeEEecccEEEEEEEeCCC-EEEEEecCCCCCccccCcHHHHHHHHHHHHHHHHcCCC
Confidence 79999999999999999999999999999999999999999 999999875 456664433 3344555 789999999
Q ss_pred CCCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecC-CCHHHHHHHHHHHhhcC
Q 014285 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPA-VSPAEASELASKYCKLG 219 (427)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~-~~~~~~~~~~~~~~~~G 219 (427)
+.+++.+++.+.. +.|. +++++||||||||++||..|+|||+||||.++++|++++++. .+++++.+.+++++++|
T Consensus 80 ~~~~~~l~~~~~~-~~g~--~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~~~~~~~g~~~~~~~~~~~a~~~~~~G 156 (368)
T 1sjd_A 80 DITAAKVTPLLAK-FKGH--RMAKGALEMAVLDAELRAHERSFAAELGSVRDSVPCGVSVGIMDTIPQLLDVVGGYLDEG 156 (368)
T ss_dssp SCCHHHHHHHHTT-SCSC--HHHHHHHHHHHHHHHHHHTTCBHHHHHTCCCSEEEBEEEECCCSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHH-hcCC--HHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCccceEEeeCCCCHHHHHHHHHHHHHhC
Confidence 9999998887743 4443 568999999999999999999999999998888998888776 58999999999999999
Q ss_pred CcEEEEeccCCchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHh
Q 014285 220 FSTLKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNF 298 (427)
Q Consensus 220 f~~iKlKiG~~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~ 298 (427)
|+++|+|+|+ +.|++++++||+ .++++.|++|+|++|++++ +++++.|+++++ .|||||++++|++++++|++
T Consensus 157 f~~vKik~~~--~~~~e~v~avr~~~g~~~~l~vDan~~~~~~~-~~~~~~l~~~~i--~~iE~P~~~~~~~~~~~l~~- 230 (368)
T 1sjd_A 157 YVRIKLKIEP--GWDVEPVRAVRERFGDDVLLQVDANTAYTLGD-APQLARLDPFGL--LLIEQPLEEEDVLGHAELAR- 230 (368)
T ss_dssp CSEEEEECBT--TBSHHHHHHHHHHHCTTSEEEEECTTCCCGGG-HHHHHTTGGGCC--SEEECCSCTTCHHHHHHHHT-
T ss_pred ccEEEEecCc--hhHHHHHHHHHHhcCCCceEEEeccCCCCHHH-HHHHHHHHhcCC--CeEeCCCChhhHHHHHHHHH-
Confidence 9999999974 789999999999 5899999999999999999 999999999997 49999999999999999985
Q ss_pred hccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHh
Q 014285 299 ARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377 (427)
Q Consensus 299 ~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaa 377 (427)
++++||++||++.+..+++++++.+++|++++|++++| ++++++++++|+++|+++++++++||+|+++|++|++
T Consensus 231 ---~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~hla- 306 (368)
T 1sjd_A 231 ---RIQTPICLDESIVSARAAADAIKLGAVQIVNIKPGRVGGYLEARRVHDVCAAHGIPVWCGGMIETGLGRAANVALA- 306 (368)
T ss_dssp ---TCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECTTTTTSHHHHHHHHHHHHHTTCCEEECCCCCCHHHHHHHHHHH-
T ss_pred ---hCCCCEEECCCcCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEeCCccccHHHHHHHHHHH-
Confidence 68999999999999999999999999999999999997 9999999999999999999999999999999999999
Q ss_pred hcCCcce-eccCCC-cccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 378 GLGCIKY-VNLNTP-FLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 378 al~~~~~-~e~~~p-~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+++|+.+ .|++.+ ..+.+++ .+++.++||++.+|++||||+++|++.+
T Consensus 307 a~~~~~~~~e~~~~~~~~~~d~-~~~~~~~~G~~~~p~~PGlGv~~d~~~l 356 (368)
T 1sjd_A 307 SLPNFTLPGDTSASDRFYKTDI-TEPFVLSGGHLPVPTGPGLGVAPIPELL 356 (368)
T ss_dssp TSTTBCSCBSCCCGGGTCSSCS-SSCCCCSSSEEECCCSSBTSCCCCHHHH
T ss_pred cCCCCCcccccCCchhhhhhcC-CCCceEECCEEECCCCCcCCceeCHHHH
Confidence 9999888 788765 2456677 7888899999999999999999998865
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-66 Score=522.52 Aligned_cols=348 Identities=21% Similarity=0.295 Sum_probs=314.8
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcc-hHHHHHHHHH-HhhHhcCCCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGD-QTKALVKVRE-ACQFLRQSPPT 142 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~-~~~~~~~~~~-~~~~l~g~~~~ 142 (427)
|||++++++.+++|++.||.++.++++.++.++|+|+|++|++||||+.. ++ .. ....+++ ++|.|+|+++.
T Consensus 4 mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~Ge~~~-----~~~~~-~~~~i~~~l~~~l~g~d~~ 77 (384)
T 2pgw_A 4 VKISNVRVRPLVLPLKQPYHWSYGIRESFAVNLIEIEADDGTVGIGECTV-----APDQT-GTAAILYRLAKHLVGHSPH 77 (384)
T ss_dssp CCEEEEEEEEEEEEEEEEEECSSSEEEEEEEEEEEEEETTSCEEEEEEEC-----TTCHH-HHHHHHHHHHGGGTTSCGG
T ss_pred CEEEEEEEEEEecccCccceeccceeeeceEEEEEEEECCCCEEEEccCC-----CchHH-HHHHHHHHHHHHHCCCChh
Confidence 89999999999999999999999999999999999999999999999971 22 22 3444554 88999999999
Q ss_pred CHHHHHHH-HHHHC--CCC----hhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHH
Q 014285 143 TLNFALDE-IARIL--PGS----EFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASK 214 (427)
Q Consensus 143 ~~~~~~~~-l~~~~--~g~----~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~ 214 (427)
+++.+|+. |++.. .|. ..+++++|||+||||++||..|+|||+||||. ++++|+|++++..+++++.+.+++
T Consensus 78 ~~~~~~~~~l~~~~~~~g~~~~~~~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~v~~~~~~~~~~~e~~~~~a~~ 157 (384)
T 2pgw_A 78 DVAPLIARIFHQEYLGHGANIMRAANQIFSGIDMAMWDLQGKLAGLPVHQLLGGAHRKAVGYFYFLQGETAEELARDAAV 157 (384)
T ss_dssp GHHHHHHHHHHHHTGGGTCCCHHHHHHHHHHHHHHHHHHHHHHHTSBGGGTTTCCSSSEEEBCEECCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccccccccHHHHHHHHHHHHHHHHhHcCCCHHHHcCCCCCCceEEEEECCCCCHHHHHHHHHH
Confidence 99999999 85431 121 14689999999999999999999999999997 789999998887899999999999
Q ss_pred HhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHH
Q 014285 215 YCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHD 294 (427)
Q Consensus 215 ~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~ 294 (427)
++++||+.+|+|+|.+++.|++++++||+..+++.|+||+|++|++++|+++++.|+++++ .|||||++++|++++++
T Consensus 158 ~~~~Gf~~iKik~g~~~~~~~e~v~avr~a~gd~~l~vD~n~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~~~~~~~~ 235 (384)
T 2pgw_A 158 GHAQGERVFYLKVGRGEKLDLEITAAVRGEIGDARLRLDANEGWSVHDAINMCRKLEKYDI--EFIEQPTVSWSIPAMAH 235 (384)
T ss_dssp HHHTTCCEEEEECCSCHHHHHHHHHHHHTTSTTCEEEEECTTCCCHHHHHHHHHHHGGGCC--SEEECCSCTTCHHHHHH
T ss_pred HHHcCCCEEEECcCCCHHHHHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhcCC--CEEeCCCChhhHHHHHH
Confidence 9999999999999988899999999999953399999999999999999999999999997 49999999999999999
Q ss_pred HHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHH
Q 014285 295 VSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFAL 373 (427)
Q Consensus 295 L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~ 373 (427)
|++ ++++||++||++.+..+++++++.+++|++++|++++| ++++++++++|+++|+++++|+++||+|++++++
T Consensus 236 l~~----~~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~ 311 (384)
T 2pgw_A 236 VRE----KVGIPIVADQAAFTLYDVYEICRQRAADMICIGPREIGGIQPMMKAAAVAEAAGLKICIHSSFTTGITTCAEH 311 (384)
T ss_dssp HHH----HCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCCEEECCCSCCHHHHHHHH
T ss_pred HHh----hCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEcchhhCCHHHHHHHHHHHHHCCCeEeeccCcCCHHHHHHHH
Confidence 986 68999999999999999999999999999999999997 9999999999999999999999999999999999
Q ss_pred HHHhhcCCcce-ec-cCCCcccccCCCCC-ceeeeCcEEecCCCCCcccccCCCcC
Q 014285 374 HLAAGLGCIKY-VN-LNTPFLLSEDPFVG-GCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 374 hlaaal~~~~~-~e-~~~p~~~~~~~~~~-~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
|++++++|..+ .| +++|+ ..+++.+ ++.++||++.+|++||||+++|++++
T Consensus 312 hlaaa~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 365 (384)
T 2pgw_A 312 HIGLAIPNLDDGNQIMWQLV--QEDIVSSPDLTPKNGWLDAFRKPGLGFQLAEDLV 365 (384)
T ss_dssp HHHHHCSSBCSSBCCCGGGB--SSCSEEESCCCCBTTEEECCCSSBTCCEECHHHH
T ss_pred HHHHhCCCcccccccccCch--hhhhccCCCceEECCEEECCCCCcCCCcCCHHHH
Confidence 99999999876 45 55663 5777777 88899999999999999999999865
|
| >2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-65 Score=519.79 Aligned_cols=342 Identities=18% Similarity=0.228 Sum_probs=308.6
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHH-HhhHhcCCCCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVRE-ACQFLRQSPPTT 143 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~-~~~~l~g~~~~~ 143 (427)
|||++++++.+++|++.||+++.++++.++.++|+|+|++|.+||||+.. .+. .....+++ ++|.|+|+++.+
T Consensus 4 mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~g-----~~~-~~~~~i~~~l~~~l~G~d~~~ 77 (382)
T 2gdq_A 4 VKIVRIETFPLFHRLEKPYGDANGFKRYRTCYLIRIITESGIDGWGECVD-----WLP-ALHVGFTKRIIPFLLGKQAGS 77 (382)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECS-----CHH-HHHHHHHHTHHHHHTTSBTTC
T ss_pred CEEEEEEEEEEecccCcccccccceeccCcEEEEEEEECCCCEEEEeecC-----chH-HHHHHHHHHHHHHhcCCCccc
Confidence 89999999999999999999999999999999999999999999999972 111 23444565 899999999999
Q ss_pred HHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeec--CCCH---HHHHHHHHHHhh
Q 014285 144 LNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIP--AVSP---AEASELASKYCK 217 (427)
Q Consensus 144 ~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~--~~~~---~~~~~~~~~~~~ 217 (427)
++.+|+.|.+.. +++++|||+||||++||..|+|||+||||. ++++|+|.+++ ..++ +++.+.++++++
T Consensus 78 ~~~~~~~l~~~~-----~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~vp~~~~~g~~~~~~~~~e~~~~~a~~~~~ 152 (382)
T 2gdq_A 78 RLSLVRTIQKWH-----QRAASAVSMALTEIAAKAADCSVCELWGGRYREEIPVYASFQSYSDSPQWISRSVSNVEAQLK 152 (382)
T ss_dssp HHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHHTTSBHHHHTTCCSCSEEEEEEECCCBCSSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCceeEEEEecccCCCcccHHHHHHHHHHHHH
Confidence 999999997542 679999999999999999999999999998 78999997653 3678 999999999999
Q ss_pred cCCcEEEEeccC-CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhC-CCCCceEeCCCCCCChhhHHH
Q 014285 218 LGFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDM-GVIPVLFEQPVHRDDWSGLHD 294 (427)
Q Consensus 218 ~Gf~~iKlKiG~-~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~-~l~~~~iEqP~~~~d~~~~~~ 294 (427)
+||+++|+|+|. +++.|++++++||+ .++++.|+||+|++|++++|+++++.|+++ ++ .|||||++++|++++++
T Consensus 153 ~Gf~~vKik~g~~~~~~d~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~~i--~~iEqP~~~~d~~~~~~ 230 (382)
T 2gdq_A 153 KGFEQIKVKIGGTSFKEDVRHINALQHTAGSSITMILDANQSYDAAAAFKWERYFSEWTNI--GWLEEPLPFDQPQDYAM 230 (382)
T ss_dssp TTCCEEEEECSSSCHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHTTHHHHTTCSCE--EEEECCSCSSCHHHHHH
T ss_pred cCCCEEEEcCCCCCHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHHhhccCC--eEEECCCCcccHHHHHH
Confidence 999999999997 89999999999999 589999999999999999999999999999 87 59999999999999999
Q ss_pred HHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHH
Q 014285 295 VSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFAL 373 (427)
Q Consensus 295 L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~ 373 (427)
|++ ++++||++||++.+..+++++++.+++|++++|++++| ++++++++++|+++|+++++| +.||+++++|++
T Consensus 231 l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~-~~es~i~~~a~l 305 (382)
T 2gdq_A 231 LRS----RLSVPVAGGENMKGPAQYVPLLSQRCLDIIQPDVMHVNGIDEFRDCLQLARYFGVRASAH-AYDGSLSRLYAL 305 (382)
T ss_dssp HHT----TCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHHHTCEECCC-CSSCSHHHHHHH
T ss_pred HHh----hCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEeec-CCCcHHHHHHHH
Confidence 985 68999999999999999999999999999999999997 999999999999999999999 889999999999
Q ss_pred HHHhhcCCcc-e-eccCCCcccccCCCCCcee------eeCcEEecCCCCCcccccCCCcC
Q 014285 374 HLAAGLGCIK-Y-VNLNTPFLLSEDPFVGGCE------VSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 374 hlaaal~~~~-~-~e~~~p~~~~~~~~~~~~~------~~~G~i~~p~~pGlGve~d~~~v 426 (427)
|++++++|.. + .+.+.| +.++++.+++. ++||++.+|++||||+++|++++
T Consensus 306 ~laa~~~~~~e~~~d~~~~--~~~d~~~~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 364 (382)
T 2gdq_A 306 FAQACLPPWSKMKNDHIEP--IEWDVMENPFTDLVSLQPSKGMVHIPKGKGIGTEINMEIV 364 (382)
T ss_dssp HHHHTSCCSSSCTTSCSCC--EEEECSSCGGGGGBCCCCBTTEEECCCSSBTSSCBCHHHH
T ss_pred HHHHhCchHhhcccccccc--HHHHHhcccccccccccccCCEEECCCCCCCCceeCHHHH
Confidence 9999999832 1 133344 35677778888 89999999999999999998865
|
| >3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-66 Score=530.31 Aligned_cols=340 Identities=14% Similarity=0.186 Sum_probs=299.8
Q ss_pred eeeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcC-CceEEEEeecCCCCCcchHHHHHHHHH-HhhHhcCCCC
Q 014285 64 WVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSN-GCVGWGEVAVVPLVTGDQTKALVKVRE-ACQFLRQSPP 141 (427)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~-G~~G~GE~~~~~~~s~~~~~~~~~~~~-~~~~l~g~~~ 141 (427)
.||||+|+++.++- - ..+.++|+|+||+ |++||||+.+.. ..+ .....+++ +.|.|+|+++
T Consensus 26 ~mkIt~v~~~~~~~-----~--------~~~~v~V~v~Td~~Gi~G~GE~~~~~--~~~--~~~~~i~~~l~p~LiG~dp 88 (440)
T 3t6c_A 26 NLFITNVKTILTAP-----G--------GIDLVVVKIETNEPGLYGLGCATFTQ--RIY--AVQSAIDEYLAPFLIGKDP 88 (440)
T ss_dssp CCCEEEEEEEEECT-----T--------SSCEEEEEEEESSTTCEEEEECCCGG--GHH--HHHHHHHTTHHHHHTTCCT
T ss_pred CCEEEEEEEEEECC-----C--------CceEEEEEEEEcCCCCEEEEeeccCC--CHH--HHHHHHHHHHHHHHcCCCh
Confidence 49999999976531 0 1267999999999 999999997532 221 22233555 8999999999
Q ss_pred CCHHHHHHHHHHHC--C-CChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhh
Q 014285 142 TTLNFALDEIARIL--P-GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCK 217 (427)
Q Consensus 142 ~~~~~~~~~l~~~~--~-g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~ 217 (427)
.+++.+|+.|++.. . |...++|++|||||||||+||.+|+|||+||||. ++++|+|.+++..+++++.++++++++
T Consensus 89 ~~ie~i~~~~~~~~~~~~g~~~~~A~saID~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~e~~~~~a~~~~~ 168 (440)
T 3t6c_A 89 ARIEDIWQSAAVSGYWRNGPVMNNALSGIDMALWDIKGKQAGLPVYELLGGKCRDGIALYVHTDGADEVEVEDSARAKME 168 (440)
T ss_dssp TCHHHHHHHHHHTTSCCCSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSSEEEEEEECCSSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcccCCCcchhhHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCeeEEEEECCCCCHHHHHHHHHHHHH
Confidence 99999999998752 2 2234679999999999999999999999999997 789999998888899999999999999
Q ss_pred cCCcEEEEeccCC-----------------------------------------chhhHHHHHHHHH-hCCCcEEEEeCC
Q 014285 218 LGFSTLKLNVGRN-----------------------------------------ITADFDVLQAIHA-VHPHCSFILDAN 255 (427)
Q Consensus 218 ~Gf~~iKlKiG~~-----------------------------------------~~~d~~~l~~ir~-~~~~~~L~vDAN 255 (427)
+||+++|+|+|.. ++.|++++++||+ .++++.|+||+|
T Consensus 169 ~Gf~~~K~KvG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~v~avR~a~G~d~~L~vDaN 248 (440)
T 3t6c_A 169 EGYQYIRCQMGMYGGAGTDDLRLIANRMVKAKNIQPKRSPRTKAPGIYFDPEAYAKSIPRLFDHLRNKLGFSVELLHDAH 248 (440)
T ss_dssp TTCSEEEECSSSSTTCCBCCHHHHSSCBCCCSSCCCCCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHCSSSEEEEECT
T ss_pred cCCCEEEEeeccCCccccccccccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 9999999999841 4678999999999 579999999999
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCC
Q 014285 256 EGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKL 335 (427)
Q Consensus 256 ~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~ 335 (427)
++|++++|++++++|+++++ .|||||++++|++++++|++ ++++||++||++.+..+++++++.+++|++|+|+
T Consensus 249 ~~~~~~~A~~~~~~L~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~ 322 (440)
T 3t6c_A 249 ERITPINAIHMAKALEPYQL--FFLEDPVAPENTEWLKMLRQ----QSSTPIAMGELFVNVNEWKPLIDNKLIDYIRCHI 322 (440)
T ss_dssp TCSCHHHHHHHHHHTGGGCC--SEEECSSCGGGGGGHHHHHH----HCCSCEEECTTCCSHHHHHHHHHTTCCSEECCCG
T ss_pred CCCCHHHHHHHHHHhhhcCC--CEEECCCChhhHHHHHHHHh----hcCCCEEeCcccCCHHHHHHHHHcCCccceeech
Confidence 99999999999999999997 49999999999999999986 6899999999999999999999999999999999
Q ss_pred CCcc-HHHHHHHHHHHHHcCCcEEEcccC-chhHHHHHHHHHHhhcCCcceeccCCCcccccCCCCCceeeeCcEEecCC
Q 014285 336 AKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTN 413 (427)
Q Consensus 336 ~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hlaaal~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~ 413 (427)
+++| ++++++++++|+++|+++++|++. +|+|+++|++|++++++|+.+.|+..+.....+++.+++.++||++.+|+
T Consensus 323 ~~~GGit~~~~ia~~A~~~gi~~~~h~~~~~s~Ig~aa~~hlaaa~pn~~~~E~~~~~~~~~~~~~~~~~~~~G~i~vp~ 402 (440)
T 3t6c_A 323 SSIGGITPAKKIAIYSELNGVRTAWHSPGDISPIGVCANMHLDLSSPNFGIQEYTPMNDALREVFPGCPEVDQGYAYVND 402 (440)
T ss_dssp GGGTSHHHHHHHHHHHHHTTCEECCCCSSSSCHHHHHHHHHHHHHCTTBCCEECCCCCHHHHHHSTTCCEEETTEEECCC
T ss_pred hhhCCHHHHHHHHHHHHHcCCEEEeccCCCccHHHHHHHHHHHHhCCCCceEeecCcchhhHhhcCCCceecCCEEECCC
Confidence 9997 999999999999999999999986 79999999999999999998888776443445677888899999999999
Q ss_pred CCCcccccCCCcC
Q 014285 414 ARGQGGFLKWTIV 426 (427)
Q Consensus 414 ~pGlGve~d~~~v 426 (427)
+||||+|+|+++|
T Consensus 403 ~PGLGveld~~~l 415 (440)
T 3t6c_A 403 KPGLGIDINEALA 415 (440)
T ss_dssp CSBTSCCCCHHHH
T ss_pred CCCCCcccCHHHH
Confidence 9999999999875
|
| >1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-66 Score=520.77 Aligned_cols=348 Identities=19% Similarity=0.281 Sum_probs=302.9
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecC--CCCCcchHH-HHHHHHH-HhhHhcCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTK-ALVKVRE-ACQFLRQSP 140 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~--~~~s~~~~~-~~~~~~~-~~~~l~g~~ 140 (427)
|||++++++.+++|++.||.++.++++.++.++|+|+| +|++||||+.+. ++|+++..+ ....+++ +.|.|+|++
T Consensus 8 mkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~t-dG~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~~~l~g~d 86 (375)
T 1r0m_A 8 FKIEAAEIVVARLPLKFRFETSFGVQTHKVVPLLILHG-EGVQGVAEGTMEARPMYREETIAGALDLLRGTFLPAILGQT 86 (375)
T ss_dssp EECCEEEEEEEEEEBC----------CEEEEEEEEEEE-TTEEEEEECCCBSSSSSSSCBHHHHHHHHHHTHHHHHTTCE
T ss_pred cEEEEEEEEEEeeecCCCeEecceEEeeccEEEEEEEE-CCeEEEEEEecCCCCcccCCCHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999 599999999865 556664433 3334554 789999999
Q ss_pred CCCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecC-CCHHHHHHHHHHHhhcC
Q 014285 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPA-VSPAEASELASKYCKLG 219 (427)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~-~~~~~~~~~~~~~~~~G 219 (427)
+.+++.+++.+.. +.|. +++++|||+||||++||..|+|||+||||.++++|++++++. .+++++.+.+++++++|
T Consensus 87 ~~~~~~l~~~~~~-~~g~--~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~~~~~~~g~~~~~~~~~~~a~~~~~~G 163 (375)
T 1r0m_A 87 FANPEAVSDALGS-YRGN--RMARAMVEMAAWDLWARTLGVPLGTLLGGHKEQVEVGVSLGIQADEQATVDLVRRHVEQG 163 (375)
T ss_dssp ESSHHHHHHTTTT-SCSC--HHHHHHHHHHHHHHHHHHHTCBHHHHHTCCCSEEEBCEEECCCSSHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHH-ccCc--hHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceeeeEEecCCCCHHHHHHHHHHHHHhc
Confidence 9999888876632 3443 468999999999999999999999999998888898888776 58999999999999999
Q ss_pred CcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhh
Q 014285 220 FSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFA 299 (427)
Q Consensus 220 f~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~ 299 (427)
|+++|+|+|+ ++|++++++||+..|++.|++|+|++|++++ +++++.|+++++ .|||||++++|++++++|++
T Consensus 164 ~~~iKik~~~--~~d~~~v~avr~a~~~~~l~vDan~~~~~~~-~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~~-- 236 (375)
T 1r0m_A 164 YRRIKLKIKP--GWDVQPVRATREAFPDIRLTVDANSAYTLAD-AGRLRQLDEYDL--TYIEQPLAWDDLVDHAELAR-- 236 (375)
T ss_dssp CSCEEEECBT--TBSHHHHHHHHHHCTTSCEEEECTTCCCGGG-HHHHHTTGGGCC--SCEECCSCTTCSHHHHHHHH--
T ss_pred ccEEEEecCh--HHHHHHHHHHHHHcCCCeEEEeCCCCCCHHH-HHHHHHHHhCCC--cEEECCCCcccHHHHHHHHH--
Confidence 9999999974 7899999999995599999999999999999 999999999997 49999999999999999986
Q ss_pred ccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhh
Q 014285 300 RDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAG 378 (427)
Q Consensus 300 r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaa 378 (427)
++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++++++||+|++++++|++ +
T Consensus 237 --~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~hla-a 313 (375)
T 1r0m_A 237 --RIRTPLCLDESVASASDARKALALGAGGVINLKVARVGGHAESRRVHDVAQSFGAPVWCGGMLESGIGRAHNIHLS-T 313 (375)
T ss_dssp --HCSSCEEESTTCCSHHHHHHHHHHTSCSEEEECTTTTTSHHHHHHHHHHHHHTTCCEEECCCCCCHHHHHHHHHHT-T
T ss_pred --hCCCCEEecCccCCHHHHHHHHHhCCCCEEEECcchhcCHHHHHHHHHHHHHcCCcEEecCccccHHHHHHHHHHH-c
Confidence 68999999999999999999999999999999999997 9999999999999999999999999999999999999 9
Q ss_pred cCCcce-eccCCC-cccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 379 LGCIKY-VNLNTP-FLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 379 l~~~~~-~e~~~p-~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
++|+.+ .|++.+ ..+.++++.+++.++||++.+|++||||+++|++++
T Consensus 314 ~~~~~~~~e~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 363 (375)
T 1r0m_A 314 LSNFRLPGDTSSASRYWERDLIQEPLEAVDGLMPVPQGPGTGVTLDREFL 363 (375)
T ss_dssp STTBCSCBSCCCGGGTBSSCSBSSCCCCBTTEEECCCSSBTSCCBCHHHH
T ss_pred CCCCCcccccCCchhhhhhhcccCCceEECCEEECCCCCcCCCccCHHHH
Confidence 999888 788765 245678887888999999999999999999999865
|
| >4hnl_A Mandelate racemase/muconate lactonizing enzyme; dehydratase, magnesium binding, enzyme function initiative,; 1.48A {Enterococcus gallinarum EG2} PDB: 3s47_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-66 Score=530.86 Aligned_cols=340 Identities=14% Similarity=0.188 Sum_probs=297.6
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHH-HhhHhcCCCCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVRE-ACQFLRQSPPTT 143 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~-~~~~l~g~~~~~ 143 (427)
++||+++.+.+.- ..++.++|||+||+|++||||+.+. ++++. ....+++ +.|.|+|++|.+
T Consensus 26 ~~It~v~~~~v~~-------------~~~~~vlV~v~Td~G~~G~GEa~~~--~~~~~--~~~~i~~~lap~LiG~dp~~ 88 (421)
T 4hnl_A 26 TIITDVKSFAIKP-------------DRHNLVVVKVETNKGISGLGCSTFQ--FRPLA--VKTVVDEYLRPLLMGRDANE 88 (421)
T ss_dssp CBEEEEEEEEECS-------------SSSCEEEEEEEETTSCCEEEECCCT--TSHHH--HHHHHHHTHHHHHTTCBTTC
T ss_pred ceEEEEEEEEECC-------------CCceEEEEEEEECCCCEEEEeccCC--CCHHH--HHHHHHHHHHHHHCCCChhh
Confidence 6799999876531 1246789999999999999999643 23322 2223444 789999999999
Q ss_pred HHHHHHHHHHHCC---CChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhhcC
Q 014285 144 LNFALDEIARILP---GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLG 219 (427)
Q Consensus 144 ~~~~~~~l~~~~~---g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~G 219 (427)
++.+|+.|+.... +....+|++||||||||++||.+|+|||+||||. ++++|+|.++...+++++.+.+++++++|
T Consensus 89 ie~i~~~~~~~~~~~~~~~~~~A~said~ALwDl~gK~~g~Pl~~LLGG~~r~~v~~y~~~~~~~~~~~~~~a~~~~~~G 168 (421)
T 4hnl_A 89 IEDIWQVMNVNSYWRNGPITNNAISGIDMALWDIKGQLADMPLYQLLGGKARTAIPAYTHAVADNLDDLYHEIDRFLAAG 168 (421)
T ss_dssp HHHHHHHHHHTTSSCCSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSSSCEEEEEEEEESSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhccccCCchHHHHHHHHHHHHHHHHHHHhCCCHHHhcCCccCcccceecccCCCCHHHHHHHHHHHHHhh
Confidence 9999999976421 2234678999999999999999999999999997 68999999988889999999999999999
Q ss_pred CcEEEEeccC------------------------CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCC
Q 014285 220 FSTLKLNVGR------------------------NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMG 274 (427)
Q Consensus 220 f~~iKlKiG~------------------------~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~ 274 (427)
|+++|+|+|. +++.|+++++++|+ .++++.|+||+|++|++++|+++++.|++++
T Consensus 169 ~~~~K~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~v~avR~a~G~~~~l~vDan~~~~~~~A~~~~~~l~~~~ 248 (421)
T 4hnl_A 169 YRYIRCQLGFYGGNPSQLQTPEEPISGSYFDQTDYMETTLKMFAAIKEKYGNQFQMLHDVHERLHPNQAIQFAKAAEPYQ 248 (421)
T ss_dssp CSEEEEEESCCCCCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHTTSSEEEEECTTCSCHHHHHHHHHHHGGGC
T ss_pred HHHHhhccccccCCchhccccccccccccccchhHHHHHHHHHHHHHHHhCCCceEeccccccCCHHHHHHHHHHhhhhh
Confidence 9999999984 24679999999999 5899999999999999999999999999999
Q ss_pred CCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHc
Q 014285 275 VIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKS 353 (427)
Q Consensus 275 l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~ 353 (427)
+ .|||||++++|++++++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++
T Consensus 249 i--~~iEeP~~~~d~~~~~~l~~----~~~ipIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GGite~~~ia~~A~~~ 322 (421)
T 4hnl_A 249 L--FFLEDILPPDQSHWLTQLRS----QSATPIATGELFNNPMEWQELVKNRQIDFMRAHVSQIGGITPALKLAHFCDAM 322 (421)
T ss_dssp C--SEEECCSCGGGGGGHHHHHT----TCCCCEEECTTCCSGGGTHHHHHTTCCSEECCCGGGGTSHHHHHHHHHHHHHT
T ss_pred h--cccccCCcccchHHHHHHHh----cCCCCeecCcceehhHHHHHHHhcCCceEEEeCCCCCCCHHHHHHHHHHHHHC
Confidence 7 59999999999999999985 78999999999999999999999999999999999997 99999999999999
Q ss_pred CCcEEEcccCc-hhHHHHHHHHHHhhcCCcceeccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcCC
Q 014285 354 GLHLMIDGMIE-TRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVS 427 (427)
Q Consensus 354 gi~~~~~s~~e-s~ig~~a~~hlaaal~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v~ 427 (427)
|+++++|++.+ |+|+++|++|++++++|+.+.|........++++.+++.++||++.+|++||||||+|+|+|.
T Consensus 323 gi~v~~h~~~~~s~i~~aa~~hl~aa~~n~~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGLGveld~~~l~ 397 (421)
T 4hnl_A 323 GVRIAWHTPSDISPVGLAVNTHLNIHLHNAAIQETIELPANTQSVFVGSPQPKGGFFYPMEKSGIGITFDEEAAA 397 (421)
T ss_dssp TCEECCCCCSSSCHHHHHHHHHHHHHCTTBCCEECCCCCHHHHHHEECCCCCBTTEECCCCSSBSCCEECHHHHT
T ss_pred CCeEEEeCCcchhHHHHHHHHHHHHhCCCCccccccCcchhhhhhccCCCeEECCEEECCCCCCCCeeECHHHHh
Confidence 99999999986 789999999999999999888755433334566777888999999999999999999998763
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-65 Score=513.43 Aligned_cols=343 Identities=19% Similarity=0.270 Sum_probs=310.1
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHH-HHhhHhcCCCCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVR-EACQFLRQSPPTT 143 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~-~~~~~l~g~~~~~ 143 (427)
|||++++++.+++|++.||.++.++++.++.++|+|+|++|++||||+.+.+ ++.......++ .++|.|+|+++.+
T Consensus 4 mkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~v~v~td~G~~G~Ge~~~~~---~~~~~~~~~i~~~l~~~l~g~d~~~ 80 (359)
T 1mdl_A 4 VLITGLRTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFAYT---PVALKSLKQLLDDMAAMIVNEPLAP 80 (359)
T ss_dssp CBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEEECSS---GGGHHHHHHHHHHHHHHHTTSBSCH
T ss_pred CEEEEEEEEEEEcCCCCCccccccccccccEEEEEEEeCCCCEEEEEeecCC---CchHHHHHHHHHHHHHHHCCCCccc
Confidence 8999999999999999999999999999999999999999999999998753 22223334455 4889999999999
Q ss_pred HHHHHHHHHHHCC--C--ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecCCCHHHHHHHHHHHhhcC
Q 014285 144 LNFALDEIARILP--G--SEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLG 219 (427)
Q Consensus 144 ~~~~~~~l~~~~~--g--~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~G 219 (427)
++.+ +.|++... + ...+++++||||||||++||..|+|||+||||.++++|+|.+++..+++++.+.+++++++|
T Consensus 81 ~~~~-~~l~~~~~~~~~~~~~~~a~~aid~Al~Dl~~k~~g~Pl~~llGg~~~~vp~~~~~g~~~~~~~~~~a~~~~~~G 159 (359)
T 1mdl_A 81 VSLE-AMLAKRFCLAGYTGLIRMAAAGIDMAAWDALGKVHETPLVKLLGANARPVQAYDSHSLDGVKLATERAVTAAELG 159 (359)
T ss_dssp HHHH-HHHHHHTTTTCSSHHHHHHHHHHHHHHHHHHHHHTTCBHHHHTTCCCCCEEEEEECCSCHHHHHHHHHHHHHHTT
T ss_pred hHHH-HHHHHHHHhhccCchHHHHHHHHHHHHHHHhhhhcCCcHHHHhCCCCCCeeeeeecCCCCHHHHHHHHHHHHHcC
Confidence 9998 88876432 2 13578999999999999999999999999999988999998876678999999999999999
Q ss_pred CcEEEEeccC-CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHH
Q 014285 220 FSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSN 297 (427)
Q Consensus 220 f~~iKlKiG~-~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~ 297 (427)
|+++|+|+|. +++.|++++++||+ .++++.|++|+|++|++++|+++++.|+++++ .|||||++++|++++++|++
T Consensus 160 f~~iKik~g~~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iE~P~~~~~~~~~~~l~~ 237 (359)
T 1mdl_A 160 FRAVKTRIGYPALDQDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGV--TWIEEPTLQHDYEGHQRIQS 237 (359)
T ss_dssp CSEEEEECCCSSHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHHTC--SCEECCSCTTCHHHHHHHHH
T ss_pred CCEEEEecCCCCHHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHhCC--CeEECCCChhhHHHHHHHHH
Confidence 9999999997 89999999999999 58999999999999999999999999999997 49999999999999999986
Q ss_pred hhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHH
Q 014285 298 FARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLA 376 (427)
Q Consensus 298 ~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla 376 (427)
++++||++||++.+..+++++++.+++|++++|++++| ++++++++++|+++|+++++|++ ++ +++|++
T Consensus 238 ----~~~iPI~~de~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~~~~i~~~A~~~g~~~~~~~~-~~-----a~~~la 307 (359)
T 1mdl_A 238 ----KLNVPVQMGENWLGPEEMFKALSIGACRLAMPDAMKIGGVTGWIRASALAQQFGIPMSSHLF-QE-----ISAHLL 307 (359)
T ss_dssp ----TCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBTTTTTHHHHHHHHHHHHHHTTCCBCCBSC-HH-----HHHHHH
T ss_pred ----hCCCCEEeCCCCCCHHHHHHHHHcCCCCEEeecchhhCCHHHHHHHHHHHHHcCCeEeeccH-HH-----HHHHHH
Confidence 68999999999999999999999999999999999998 99999999999999999999985 33 899999
Q ss_pred hhcCCcceeccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 377 AGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 377 aal~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
++++++.++|++ | +..+++.+++.++||++.+|++||||+++|++++
T Consensus 308 aa~~~~~~~e~~-~--~~~d~~~~~~~~~~G~~~~p~~pGlGv~~d~~~l 354 (359)
T 1mdl_A 308 AATPTAHWLERL-D--LAGSVIEPTLTFEGGNAVIPDLPGVGIIWREKEI 354 (359)
T ss_dssp HTCTTBCCEEEC-C--SSTTTBCCCSEEETTEEECCSSSBTCCCBCHHHH
T ss_pred HhCCCCcccccC-c--hhhhhccCCceeECCEEECCCCCCCCccCCHHHH
Confidence 999999888877 5 3678888889999999999999999999999865
|
| >3cyj_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, isomerase, PSI-2; 2.30A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-66 Score=520.33 Aligned_cols=341 Identities=17% Similarity=0.177 Sum_probs=302.1
Q ss_pred eeeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHH-HHhhHhcCCCCC
Q 014285 64 WVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVR-EACQFLRQSPPT 142 (427)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~-~~~~~l~g~~~~ 142 (427)
.|||++++++.+++|++.||.++.++++.++.++|+|+|+ |.+||||+.+. + .....++ .++|.|+|+++.
T Consensus 5 ~mkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~v~V~v~td-G~~G~Ge~~~~-----~--~~~~~i~~~l~~~l~g~d~~ 76 (372)
T 3cyj_A 5 GPRVERLEVSAYTVPTDYPESDGTLQWDSTTMILVEAHGG-GRKGLGYTYGD-----V--SVGRFVESKLAGVAEGSDAL 76 (372)
T ss_dssp -CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEET-TEEEEEEEESC-----T--HHHHHHHHHTHHHHTTSBTT
T ss_pred CCEEeEEEEEEEeccCCCcccCcccccccccEEEEEEEeC-CcEEEEeccCc-----H--HHHHHHHHHHHHHHcCCCcc
Confidence 3899999999999999999999999999999999999999 99999999751 1 1223343 478999999999
Q ss_pred CHHHHHHHHHHHCCC----ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecCC--CHHHHHHHHHHHh
Q 014285 143 TLNFALDEIARILPG----SEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAV--SPAEASELASKYC 216 (427)
Q Consensus 143 ~~~~~~~~l~~~~~g----~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~--~~~~~~~~~~~~~ 216 (427)
+++.+|+.|.+.+.+ ...+++++|||+||||++||..|+|||+||||.++++|+|.+++.. +++++.+++++++
T Consensus 77 ~~~~i~~~l~~~~~~~~~~~~~~~a~~aid~AlwDl~ak~~g~Pl~~llGg~~~~vp~~~~~g~~~~~~~~~~~~a~~~~ 156 (372)
T 3cyj_A 77 SPPAVWARMQAAIRNAGRPGVGAMAVSAVDIALWDLKARLLGLPLADALPRFHAEVPVYGSGGFTSYPLRRLQEQLGGWA 156 (372)
T ss_dssp CHHHHHHHHHHHTTTTCSSBHHHHHHHHHHHHHHHHHHHHTTCBHHHHSCCCCSSEEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhhhHcCCcHHHHhCCCCCCceEEEEcCCCCCCHHHHHHHHHHHH
Confidence 999999999876432 2346899999999999999999999999999998999999987765 4577989999999
Q ss_pred hcCCcEEEEeccCCchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhC-CCCCceEeCCCCCCChhhHHH
Q 014285 217 KLGFSTLKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDM-GVIPVLFEQPVHRDDWSGLHD 294 (427)
Q Consensus 217 ~~Gf~~iKlKiG~~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~-~l~~~~iEqP~~~~d~~~~~~ 294 (427)
++||+++|+|+|.++++|++++++||+ .+|++.|+||||++|++++|+++++.|+++ ++ .|||||++++|++++++
T Consensus 157 ~~G~~~~KiKvG~~~~~d~~~v~avr~a~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~~i--~~iEqP~~~~d~~~~~~ 234 (372)
T 3cyj_A 157 AAGIPRVKMKVGREPEKDPERVRAAREAIGESVELMVDANGAYTRKQALYWAGAFAREAGI--SYLEEPVSSEDREGLRL 234 (372)
T ss_dssp HTTCCEEEEECCSSGGGHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHHHHHCC--CEEECSSCTTCHHHHHH
T ss_pred HcCCCEEEEcCCCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhhcCC--cEEECCCCcccHHHHHH
Confidence 999999999999999999999999999 589999999999999999999999999999 97 49999999999999999
Q ss_pred HHHhhccccC--CeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHH
Q 014285 295 VSNFARDTYG--ISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGF 371 (427)
Q Consensus 295 L~~~~r~~~~--iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a 371 (427)
|++ +++ +||++||++.+..+++++ .+++|++|+|++++| ++++++++++|+++|+++++|++ .++
T Consensus 235 l~~----~~~~~ipIa~dE~~~~~~~~~~~--~~a~d~i~ik~~~~GGit~~~~i~~~A~~~gi~~~~~~~------~~a 302 (372)
T 3cyj_A 235 LRD----RGPGGVAIAAGEYEWTLPQLHDL--AGCVDILQADVTRCGGITGLLRVDGICRGHQIPFSAHCA------PAV 302 (372)
T ss_dssp HHH----HSCTTCEEEECTTCCSHHHHHHH--HTTCSEEEECTTTTTHHHHHTTHHHHHHHHTCCEEECSC------HHH
T ss_pred HHH----hCCCCCCEECCCCccCHHHHHHH--hCCCCEEecCchhhCCHHHHHHHHHHHHHcCCeecccch------HHH
Confidence 986 566 799999999999999988 789999999999997 99999999999999999999997 357
Q ss_pred HHHHHhhcCCcceeccC-CCcccccCCCCCceeeeCcEEecC-CCCCcccccCCCcC
Q 014285 372 ALHLAAGLGCIKYVNLN-TPFLLSEDPFVGGCEVSGAIYNFT-NARGQGGFLKWTIV 426 (427)
Q Consensus 372 ~~hlaaal~~~~~~e~~-~p~~~~~~~~~~~~~~~~G~i~~p-~~pGlGve~d~~~v 426 (427)
++|++++++++.+.|+. .+..+..+++.+++.++||++.+| ++||||+++|++++
T Consensus 303 ~lhlaaa~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~p~~~PGlGv~~d~~~l 359 (372)
T 3cyj_A 303 SAHACCAVESLLHLEYFHDHARVERLLFDGTLDPEGGSLRPDPDRPGLGLELKRSEA 359 (372)
T ss_dssp HHHHGGGCTTEEEEEEEHHHHHHHHHHEECCCCCGGGEECCCTTSCBTCCEECHHHH
T ss_pred HHHHHHhCCCCceeeccCCchhhhhHhhcCCCcccCcEEEcCCCCCcccceECHHHH
Confidence 89999999998777743 222234566677888999999999 99999999999865
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-65 Score=513.31 Aligned_cols=345 Identities=19% Similarity=0.279 Sum_probs=307.2
Q ss_pred eeEEEEEEEEEEeeccccccccceeE-EeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHH-HHhhHhcCCCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSV-ENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVR-EACQFLRQSPPT 142 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~-~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~-~~~~~l~g~~~~ 142 (427)
|||++++++.+++|++.||+++.+++ +.++.++|+|+|++|++||||+.+.+. +. ......++ .++|.|+|+++.
T Consensus 2 ~kI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~~V~v~td~G~~G~Ge~~~~g~-~~--~~~~~~i~~~l~~~l~G~d~~ 78 (371)
T 2ovl_A 2 SLIERVRTDLYRIPLPTRLTDSTHGAMMDFELITVRIEDSDGATGLGYTYTVNH-GG--AAVATMVDKDLRGCLLGADAE 78 (371)
T ss_dssp -CEEEEEEEEEEEEEEEEEBCTTTCCEEEEEEEEEEEEETTSCEEEEEEEEESS-SH--HHHHHHHHHTTHHHHTTSCTT
T ss_pred CceEEEEEEEEeccCCCCCccccccccCcceEEEEEEEECCCCEEEEeecCCCC-ch--HHHHHHHHHHHHHHhcCCCcc
Confidence 58999999999999999999999988 899999999999999999999987522 11 12223344 388999999999
Q ss_pred CHHHHHHHHHHHCCC----ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecC--CCHHHHHHHHHHHh
Q 014285 143 TLNFALDEIARILPG----SEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPA--VSPAEASELASKYC 216 (427)
Q Consensus 143 ~~~~~~~~l~~~~~g----~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~--~~~~~~~~~~~~~~ 216 (427)
+++.+|+.|.+...+ ...+++++||||||||++||..|+|||+||||.++++|+|.+++. .+++++.+.+++++
T Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~v~~y~~~~~~~~~~e~~~~~a~~~~ 158 (371)
T 2ovl_A 79 QIEKIWQSMWWRLHYAGRGGHATSAISAVDIALWDLKGIRARTPLWKLFGGYDPVVPVYAGGIDLELPVADLKTQADRFL 158 (371)
T ss_dssp CHHHHHHHHHHHTCTTCSSTHHHHHHHHHHHHHHHHHHHHTTSBHHHHTTCCCSEEEEEEECCBTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeeEEEeCCCcCCCHHHHHHHHHHHH
Confidence 999999999875432 234689999999999999999999999999999999999988654 38999999999999
Q ss_pred hcCCcEEEEeccC-CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHH
Q 014285 217 KLGFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHD 294 (427)
Q Consensus 217 ~~Gf~~iKlKiG~-~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~ 294 (427)
++||+.||+|+|. +++.|++++++||+ .++++.|+||+|++|++++|+++++.|+++++ .|||||++++|++++++
T Consensus 159 ~~Gf~~iKik~g~~~~~~~~e~v~avr~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~ 236 (371)
T 2ovl_A 159 AGGFRAIKMKVGRPDLKEDVDRVSALREHLGDSFPLMVDANMKWTVDGAIRAARALAPFDL--HWIEEPTIPDDLVGNAR 236 (371)
T ss_dssp HTTCSCEEEECCCSSHHHHHHHHHHHHHHHCTTSCEEEECTTCSCHHHHHHHHHHHGGGCC--SEEECCSCTTCHHHHHH
T ss_pred HcCCCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCC--CEEECCCCcccHHHHHH
Confidence 9999999999997 88999999999999 58999999999999999999999999999997 49999999999999999
Q ss_pred HHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHH
Q 014285 295 VSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFAL 373 (427)
Q Consensus 295 L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~ 373 (427)
|++ ++++||++||++.+..+++++++.+++|++++|++++| ++++++++++|+++|+++++|++.| +++
T Consensus 237 l~~----~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~~~~i~~~A~~~gi~~~~h~~~~------a~~ 306 (371)
T 2ovl_A 237 IVR----ESGHTIAGGENLHTLYDFHNAVRAGSLTLPEPDVSNIGGYTTFRKVAALAEANNMLLTSHGVHD------LTV 306 (371)
T ss_dssp HHH----HHCSCEEECTTCCSHHHHHHHHHHTCCSEECCCTTTTTSHHHHHHHHHHHHHTTCCEEECSCHH------HHH
T ss_pred HHh----hCCCCEEeCCCCCCHHHHHHHHHcCCCCEEeeCccccCCHHHHHHHHHHHHHcCCeEccccHHH------HHH
Confidence 986 67899999999999999999999999999999999997 9999999999999999999999754 799
Q ss_pred HHHhhcCCcceeccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 374 HLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 374 hlaaal~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
|++++++++.++|+.. + +..+++.+++.++||++.+|++||||+++|++++
T Consensus 307 hlaaa~~~~~~~e~~~-~-~~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 357 (371)
T 2ovl_A 307 HALASVPHRTYMEAHG-F-GLHAYMAEPMAVTDGCVSAPDRPGHGVVLDFERL 357 (371)
T ss_dssp HHHTSCTTEEEEECC-----CGGGBSSCCCCBTTEEECCCSSBTCCCBCHHHH
T ss_pred HHHhhCCCCcccccCh-H-HHHHhccCCCeeeCCEEECCCCCCCCCccCHHHH
Confidence 9999999988888653 2 3466777888899999999999999999999865
|
| >3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-65 Score=522.41 Aligned_cols=349 Identities=20% Similarity=0.283 Sum_probs=307.0
Q ss_pred eeeEEEEEEEEEEeecccccccccee--EEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHH-HhhHhcCCC
Q 014285 64 WVDVQRAEGRELNVALSAPLSLGLSS--VENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVRE-ACQFLRQSP 140 (427)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~a~~~--~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~-~~~~l~g~~ 140 (427)
.|||++++++.+++|++.||.++.++ .+.++.++|+|+|++|++||||+.+ +.+. ......+++ +.|.|+|++
T Consensus 38 ~MkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~v~V~v~td~G~~G~GE~~~--g~~~--~~~~~~i~~~l~p~liG~d 113 (428)
T 3bjs_A 38 DMKITKINAIPLSYRLPEGKTVTMGVGSTIKRDAIIIRVETSEGITGYGEAHP--GRSP--GAITSLIHNTIAPMLIGMK 113 (428)
T ss_dssp -CBEEEEEEEEEEEECC---CCBCSSCBCSEEEEEEEEEEETTSCEEEEEECC--TTCH--HHHHHHHHHTTTTTTTTSB
T ss_pred CCEEeEEEEEEEecccCCcccccccccccccccEEEEEEEECCCCEEEEEecC--CCCH--HHHHHHHHHHHHHHhCCCC
Confidence 49999999999999999999999998 8889999999999999999999986 2221 223334554 789999999
Q ss_pred CCCHHHHHHHHHHHCC---C--ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeec--CCCH-HHHHHHH
Q 014285 141 PTTLNFALDEIARILP---G--SEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIP--AVSP-AEASELA 212 (427)
Q Consensus 141 ~~~~~~~~~~l~~~~~---g--~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~--~~~~-~~~~~~~ 212 (427)
+.+++.+|+.|++... + ...+++++||||||||+.||..|+|||+||||.++++|+|.+.+ ..++ +++.+.+
T Consensus 114 ~~~~~~i~~~l~~~~~~~~~~~g~~~~A~~aid~AlwDl~gk~~g~Pl~~lLGg~~~~vp~~~sg~~~~~~~~e~~~~~a 193 (428)
T 3bjs_A 114 ATDCVGAWQRVHRMQLSSHGLGAGAALAISGIDMALWDIRGKAANMPLYELLGGSKRRIPAYAGGIALGYQPKESLAEEA 193 (428)
T ss_dssp TTCHHHHHHHHHHHTTTTTSCTHHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCCCCEEEEEESSCSCSCCHHHHHHHH
T ss_pred ccCHHHHHHHHHHhhhhccCCcchHHHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCceeeeeeccccCCChHHHHHHHH
Confidence 9999999999966422 2 12568999999999999999999999999999988999997622 3578 9999999
Q ss_pred HHHhhcCCcEEEEeccCCchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhh
Q 014285 213 SKYCKLGFSTLKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSG 291 (427)
Q Consensus 213 ~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~ 291 (427)
++++++||+++|+|+|.+++.|++++++||+ .++++.|+||+|++|++++|+++++.|+++++ .|||||++++|+++
T Consensus 194 ~~~~~~Gf~~vKik~g~~~~~d~e~v~avR~avG~d~~l~vDan~~~~~~eai~~~~~L~~~~i--~~iEqP~~~~d~~~ 271 (428)
T 3bjs_A 194 QEYIARGYKALKLRIGDAARVDIERVRHVRKVLGDEVDILTDANTAYTMADARRVLPVLAEIQA--GWLEEPFACNDFAS 271 (428)
T ss_dssp HHHHHHTCSEEEEECCSCHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTTC--SCEECCSCTTCHHH
T ss_pred HHHHHCCCCEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCC--CEEECCCCccCHHH
Confidence 9999999999999999889999999999999 58999999999999999999999999999997 49999999999999
Q ss_pred HHHHHHhhccccC-CeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHH
Q 014285 292 LHDVSNFARDTYG-ISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLAT 369 (427)
Q Consensus 292 ~~~L~~~~r~~~~-iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~ 369 (427)
+++|++ +++ +||++||++.+..+++++++.+++|++++|++++| ++++++++++|+++|+++++| +.||++++
T Consensus 272 ~~~l~~----~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGitea~~ia~~A~~~gi~~~~~-~~es~i~~ 346 (428)
T 3bjs_A 272 YREVAK----ITPLVPIAAGENHYTRFEFGQMLDAGAVQVWQPDLSKCGGITEGIRIAAMASAYRIPINAH-SSATGLNH 346 (428)
T ss_dssp HHHHTT----TCSSSCEEECTTCCSHHHHHHHHTTCCEEEECCBTTTSSCHHHHHHHHHHHHHTTCCBCCB-CCSSHHHH
T ss_pred HHHHHH----hCCCCcEEcCCCcCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEec-CCCcHHHH
Confidence 999975 688 99999999999999999999999999999999997 999999999999999999999 88999999
Q ss_pred HHHHHHHhhcCCcceec----cCCCcccccCCCCCcee-eeCcEEecCCCCCcccccCCCcC
Q 014285 370 GFALHLAAGLGCIKYVN----LNTPFLLSEDPFVGGCE-VSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 370 ~a~~hlaaal~~~~~~e----~~~p~~~~~~~~~~~~~-~~~G~i~~p~~pGlGve~d~~~v 426 (427)
++++|++++++|+.+.| .+.| +.+ ++.+++. ++||++.+|++||||+++|++++
T Consensus 347 ~a~~hlaaa~~~~~~~E~~~~~~~~--~~~-~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 405 (428)
T 3bjs_A 347 AATIHFLAATENAGYFEACVSKFNP--FRD-MFGTSFEIGADGCVEPPDAPGLGIEVDESIF 405 (428)
T ss_dssp HHHHHHHHHCTTBCCEEEECCSSCT--TTS-TTTC-CCCCTTSEECCCCSSBTCCCCCGGGT
T ss_pred HHHHHHHHhCCCccceecccccccc--HHH-hccCCCeeeeCCEEECCCCCCCCCeECHHHH
Confidence 99999999999976654 2345 234 6677888 89999999999999999999986
|
| >3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-65 Score=519.81 Aligned_cols=334 Identities=19% Similarity=0.244 Sum_probs=290.0
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCCCH
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTL 144 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~~~ 144 (427)
|||++|+++.+ | . +.++|+|+||+|++||||+.+.. +.+. ....++.+.|.|+|++|.++
T Consensus 2 MkIt~i~~~~~--~--~------------~~~~V~v~td~G~~G~GE~~~~g--~~~~--~~~~i~~l~p~liG~dp~~~ 61 (405)
T 3rr1_A 2 VKITRLTTYRL--P--P------------RWMFLKVETDEGVTGWGEPVIEG--RART--VEAAVHELSDYLIGQDPSRI 61 (405)
T ss_dssp CCEEEEEEEEE--T--T------------TEEEEEEEETTSCEEEECCCCTT--CHHH--HHHHHHHHGGGTTTSCTTCH
T ss_pred CeEEEEEEEEE--C--C------------CEEEEEEEECCCCEEEEeCCCCC--CHHH--HHHHHHHHHHHHCCCCcccH
Confidence 89999999876 2 2 23999999999999999998642 1221 22335668999999999999
Q ss_pred HHHHHHHHHH--CCC-ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhhcCC
Q 014285 145 NFALDEIARI--LPG-SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGF 220 (427)
Q Consensus 145 ~~~~~~l~~~--~~g-~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf 220 (427)
+.+|+.|++. ..| ...+++++|||||||||+||.+|+|||+||||. ++++|+|.+++..+++++.+++++++++||
T Consensus 62 e~~~~~l~~~~~~~g~~~~~~A~said~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~e~~~~~a~~~~~~G~ 141 (405)
T 3rr1_A 62 NDLWQTMYRAGFYRGGPILMSAIAGIDQALWDIKGKVLGVPVYELLGGLVRDKMRTYSWVGGDRPADVIAGMKALQAGGF 141 (405)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSCEEEEEECCCSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhcccCCchHHHHHHHHHHHHHHHHHHHhCCcHHHHhCccccCceeeeEeCCCCCHHHHHHHHHHHHHcCC
Confidence 9999999874 233 234679999999999999999999999999997 789999999998999999999999999999
Q ss_pred cEEEEeccCC----------chhhHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCCh
Q 014285 221 STLKLNVGRN----------ITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW 289 (427)
Q Consensus 221 ~~iKlKiG~~----------~~~d~~~l~~ir~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~ 289 (427)
++||+ +|.+ +++|++++++||+. ++++.|+||+|++|++++|+++++.|+++++ .|||||++++|+
T Consensus 142 ~~iKl-~G~~~~~~~~~~~~~~~d~e~v~avR~avG~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i--~~iEeP~~~~d~ 218 (405)
T 3rr1_A 142 DHFKL-NGCEEMGIIDTSRAVDAAVARVAEIRSAFGNTVEFGLDFHGRVSAPMAKVLIKELEPYRP--LFIEEPVLAEQA 218 (405)
T ss_dssp CEEEE-ESCCSSSCBCSHHHHHHHHHHHHHHHHTTGGGSEEEEECCSCBCHHHHHHHHHHHGGGCC--SCEECSSCCSST
T ss_pred CEEEE-ecCCcccccccchhHHHHHHHHHHHHHHhCCCceEEEECCCCCCHHHHHHHHHHHHhcCC--CEEECCCCcccH
Confidence 99999 7752 57899999999995 7999999999999999999999999999997 499999999999
Q ss_pred hhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHH
Q 014285 290 SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLA 368 (427)
Q Consensus 290 ~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig 368 (427)
+++++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++ +|+|+
T Consensus 219 ~~~~~l~~----~~~iPIa~dE~i~~~~~~~~~l~~~a~d~v~~d~~~~GGitea~kia~lA~~~gi~v~~h~~-~s~i~ 293 (405)
T 3rr1_A 219 ETYARLAA----HTHLPIAAGERMFSRFDFKRVLEAGGVSILQPDLSHAGGITECVKIAAMAEAYDVALAPHCP-LGPIA 293 (405)
T ss_dssp HHHHHHHT----TCSSCEEECTTCCSHHHHHHHHHHCCCSEECCBTTTTTHHHHHHHHHHHHHTTTCEECCBCC-SCHHH
T ss_pred HHHHHHHh----cCCCCEEecCCcCCHHHHHHHHHHhCCCeEEEChhhcCCHHHHHHHHHHHHHcCCEEEeCCC-CcHHH
Confidence 99999985 78999999999999999999999999999999999997 99999999999999999999986 79999
Q ss_pred HHHHHHHHhhcCCcceeccC--CCcccccCCCC-----CceeeeCcEEecCCCCCcccccCCCcC
Q 014285 369 TGFALHLAAGLGCIKYVNLN--TPFLLSEDPFV-----GGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 369 ~~a~~hlaaal~~~~~~e~~--~p~~~~~~~~~-----~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
++|++|++++++|+.+.|+. .+....++++. +++.++||++.+|++||||||+|+++|
T Consensus 294 ~aa~~hlaaa~pn~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~vp~~PGLGveld~~~l 358 (405)
T 3rr1_A 294 LAACLHVDFVSWNATLQEQSMGIHYNKGAELLDYVRNKADFALEGGYIRPPRLPGLGVDIDEALV 358 (405)
T ss_dssp HHHHHHHHHHCTTBCCEEECC--------CGGGGBSCGGGGCEETTEECCCCSSBTSCCBCHHHH
T ss_pred HHHHHHHHHhCCCceeeeeccccccccchhhhhhcccCCCceeeCCEEECCCCCcCCcccCHHHH
Confidence 99999999999998776532 22222334433 267889999999999999999999865
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-65 Score=517.16 Aligned_cols=347 Identities=15% Similarity=0.222 Sum_probs=311.3
Q ss_pred eeEEEEEEEEEEeeccc--------------------cccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHH
Q 014285 65 VDVQRAEGRELNVALSA--------------------PLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTK 124 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~--------------------p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~ 124 (427)
|||++++++.+++|++. |++++.++.+.+ .++|+|+|++|++||||+.+.. ++. .
T Consensus 3 mkI~~i~~~~~~~pl~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~-~~~V~v~td~G~~G~GE~~~~~---~~~-~ 77 (388)
T 2nql_A 3 SPIATVEVFTLTQPRKVPYLGALREGEVVNPNGYIVRKGNRTVYPTFDR-SVLVRMTTEAGTVGWGETYGIV---APG-A 77 (388)
T ss_dssp CCEEEEEEEEEEECCCSCCGGGCCSCCCCBGGGEEECTTTCCEEESSEE-EEEEEEEETTCCEEEEEEECSS---CHH-H
T ss_pred ceEeEEEEEEEeccCcccccccccccccccccccccCCccccccCccce-EEEEEEEECCCCEEEEEecCCC---CcH-H
Confidence 89999999999999999 999999888888 9999999999999999998752 222 3
Q ss_pred HHHHHHH-HhhHhcCCCCCCHHHHHHHHHH-H-C-CC--ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeee
Q 014285 125 ALVKVRE-ACQFLRQSPPTTLNFALDEIAR-I-L-PG--SEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAI 198 (427)
Q Consensus 125 ~~~~~~~-~~~~l~g~~~~~~~~~~~~l~~-~-~-~g--~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~ 198 (427)
....+++ ++|.|+|+++.+++.+|+.|++ . . .+ ...+++++||||||||++||..|+|||+||||.++++|+|.
T Consensus 78 ~~~~i~~~l~~~l~G~d~~~~~~i~~~l~~~~~~~~~~~~~~~~a~~aid~AlwDl~ak~~g~Pl~~llGg~~~~vp~~~ 157 (388)
T 2nql_A 78 VAALINDLLAGFVIGRDASDPSAVYDDLYDMMRVRGYTGGFYVDALAALDIALWDIAGQEAGKSIRDLLGGGVDSFPAYV 157 (388)
T ss_dssp HHHHHHHTHHHHHTTCCSSSHHHHHHHHHHHHGGGTCSSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCCSEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHhhcccccCCchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceEeeE
Confidence 3444564 8999999999999999999954 2 1 12 22578999999999999999999999999999988999999
Q ss_pred eec-CCCHHHHHHHHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCC
Q 014285 199 TIP-AVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGV 275 (427)
Q Consensus 199 ~i~-~~~~~~~~~~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l 275 (427)
+++ ..+++++.+.+++++++||+++|+|+|. +++. ++++++||+ .++++.|+||+|++|++++|+++++.|+++++
T Consensus 158 ~~g~~~~~e~~~~~a~~~~~~Gf~~vKik~g~~~~~~-~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i 236 (388)
T 2nql_A 158 SGLPERTLKARGELAKYWQDRGFNAFKFATPVADDGP-AAEIANLRQVLGPQAKIAADMHWNQTPERALELIAEMQPFDP 236 (388)
T ss_dssp ECCCCSSHHHHHHHHHHHHHTTCCEEEEEGGGCTTCH-HHHHHHHHHHHCTTSEEEEECCSCSCHHHHHHHHHHHGGGCC
T ss_pred EeCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCCChHH-HHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCC
Confidence 876 5789999999999999999999999996 7888 999999999 68999999999999999999999999999997
Q ss_pred CCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcC
Q 014285 276 IPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSG 354 (427)
Q Consensus 276 ~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~g 354 (427)
.|||||++++|++++++|++ ++++||++||++.+..+++++++.+++|++++|+++ | ++++++++++|+++|
T Consensus 237 --~~iEqP~~~~d~~~~~~l~~----~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~-GGit~~~~i~~~A~~~g 309 (388)
T 2nql_A 237 --WFAEAPVWTEDIAGLEKVSK----NTDVPIAVGEEWRTHWDMRARIERCRIAIVQPEMGH-KGITNFIRIGALAAEHG 309 (388)
T ss_dssp --SCEECCSCTTCHHHHHHHHT----SCCSCEEECTTCCSHHHHHHHHTTSCCSEECCCHHH-HCHHHHHHHHHHHHHHT
T ss_pred --CEEECCCChhhHHHHHHHHh----hCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEecCCC-CCHHHHHHHHHHHHHcC
Confidence 49999999999999999985 689999999999999999999999999999999999 9 999999999999999
Q ss_pred CcEEEcccCchhHHHHHHHHHHhhcCCc--cee-ccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 355 LHLMIDGMIETRLATGFALHLAAGLGCI--KYV-NLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 355 i~~~~~s~~es~ig~~a~~hlaaal~~~--~~~-e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+++++|+++||+|++++++|++++++|+ .|. +++.| +.++++.+++.++||++.+|++||||+++|++++
T Consensus 310 ~~~~~h~~~es~i~~aa~~hlaa~~~~~~~e~~~d~~~~--~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 382 (388)
T 2nql_A 310 IDVIPHATVGAGIFLAASLQASSTLSMLKGHEFQHSIFE--PNRRLLDGDMDCREGRYHLPSGPGLGVRPSEAAL 382 (388)
T ss_dssp CEECCCCCSSCSHHHHHHHHHHTTCTTBCCEEECHHHHT--GGGGGEESCCEEETTEEECCCSSBTSCEECHHHH
T ss_pred CeEEeecCCCcHHHHHHHHHHHHhCCchhhhccccccch--HHHHhccCCCcccCCEEECCCCCCCCceECHHHH
Confidence 9999999999999999999999999986 232 34445 3567777888999999999999999999999865
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-64 Score=514.22 Aligned_cols=353 Identities=14% Similarity=0.218 Sum_probs=308.7
Q ss_pred cCCcceeeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcC
Q 014285 59 LTETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQ 138 (427)
Q Consensus 59 ~~~~~~~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g 138 (427)
++..-.|||++|+++.+. |++.|+.++. .++.++|+|+|++|++||||+.+.++ ..+ .....+++++|.|+|
T Consensus 5 ~~~~~~MkI~~i~~~~~~-p~~~~~~~~~----~~~~~~V~v~td~G~~G~GE~~~~~~-~~~--~~~~~i~~l~p~l~G 76 (391)
T 2qgy_A 5 NQDISIGKLSRLKIWITD-NHLSDDQWSN----TKKFIIIKITTEDGIEGWGEAFSINF-REK--GIAIIIKELFREISN 76 (391)
T ss_dssp CTTCCCCCEEEEEEEEEC-CCBCGGGCSB----CCCCEEEEEEETTCCEEEEEECCCTT-THH--HHHHHHHHHHHHHTT
T ss_pred CCCCCCCEEEEEEEEEec-CccccccccC----CCcEEEEEEEECCCCEEEecccCCCC-ChH--HHHHHHHHHHHHhcC
Confidence 344444999999999995 7777665543 35679999999999999999987652 222 223345568999999
Q ss_pred CCCCCHHHHHHHHHH-H--CCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeee--eec-CCCHHHHHHH
Q 014285 139 SPPTTLNFALDEIAR-I--LPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAI--TIP-AVSPAEASEL 211 (427)
Q Consensus 139 ~~~~~~~~~~~~l~~-~--~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~--~i~-~~~~~~~~~~ 211 (427)
+++.+++.+|+.|.+ . ..|...+++++||||||||++||..|+|||+||||. ++++|+|. +++ ..+++++.+.
T Consensus 77 ~d~~~~~~i~~~l~~~~~~~~g~~~~~a~~aid~AlwDl~ak~~g~Pl~~llGg~~~~~vp~~~~g~~~~~~~~~~~~~~ 156 (391)
T 2qgy_A 77 IPNLSIKSFYNKISLLSDGHRGLDFSSATSAIEIALWDISGKLKNLPLNSLLTKSPKPNVPIYATCWSDLKKDTNDYLRQ 156 (391)
T ss_dssp CTTCCHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHCSSCCSEEEEEEECCCSSCCCHHHHHHH
T ss_pred CChhHHHHHHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHHHhCCcHHHHcCCCcCCCcceEEecccCCCCCHHHHHHH
Confidence 999999999999976 3 223222789999999999999999999999999996 78999997 444 5689999999
Q ss_pred HHHHhhcCCcEEEEeccCC-chhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCCh
Q 014285 212 ASKYCKLGFSTLKLNVGRN-ITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW 289 (427)
Q Consensus 212 ~~~~~~~Gf~~iKlKiG~~-~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~ 289 (427)
+++++++||+.||+|+|.+ ++.|++++++||+ .++++.|+||+|++|++++|+++++.|+++++ .|||||++++|+
T Consensus 157 a~~~~~~Gf~~vKik~g~~~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~d~ 234 (391)
T 2qgy_A 157 IEKFYGKKYGGIKIYPMLDSLSISIQFVEKVREIVGDELPLMLDLAVPEDLDQTKSFLKEVSSFNP--YWIEEPVDGENI 234 (391)
T ss_dssp HHHHHHTTCSCEEECCCCSSHHHHHHHHHHHHHHHCSSSCEEEECCCCSCHHHHHHHHHHHGGGCC--SEEECSSCTTCH
T ss_pred HHHHHHcCCCEEEEccCCChHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCHHHHHHHHHHHHhcCC--CeEeCCCChhhH
Confidence 9999999999999999987 6899999999999 68999999999999999999999999999997 499999999999
Q ss_pred hhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCch-hH
Q 014285 290 SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIET-RL 367 (427)
Q Consensus 290 ~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es-~i 367 (427)
+++++|++ ++++||++||++.+..+++++++.+++|++++|++++| ++++++++++|+++|+++++|++ |+ +|
T Consensus 235 ~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~gi~~~~~~~-~~~~i 309 (391)
T 2qgy_A 235 SLLTEIKN----TFNMKVVTGEKQSGLVHFRELISRNAADIFNPDISGMGGLIDIIEISNEASNNGIFISPHCW-NSMSV 309 (391)
T ss_dssp HHHHHHHH----HCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBTTTSSCHHHHHHHHHHHHHTTCEECCBCC-SCTTH
T ss_pred HHHHHHHh----hCCCCEEEcCCcCCHHHHHHHHHcCCCCEEEECcchhCCHHHHHHHHHHHHHCCCEEeccCC-CCcHH
Confidence 99999986 68999999999999999999999999999999999997 99999999999999999999998 88 99
Q ss_pred HHHHHHHHHhhcCCcceeccCC-CcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 368 ATGFALHLAAGLGCIKYVNLNT-PFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 368 g~~a~~hlaaal~~~~~~e~~~-p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
++++++|++++++|+.+.|++. +..+..+++.+++.++||++.+|++||||+++|++++
T Consensus 310 ~~aa~~hlaaa~~~~~~~e~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 369 (391)
T 2qgy_A 310 SASAMLHVCSSIPNSEKAEIFPDYINFSKKFCELPFDIIDNKAHINKSAGLGIVIHEDIL 369 (391)
T ss_dssp HHHHHHHHHHHCTTBCCEEECGGGHHHHHTTBCCSEEEETTEEEECCSSBTCCCBCHHHH
T ss_pred HHHHHHHHHHhCCCCceEeecCccchhhHHHhcCCceeeCCEEECCCCCcCCccCCHHHH
Confidence 9999999999999998888764 2233478888889999999999999999999998865
|
| >3v5c_A Mandelate racemase/muconate lactonizing protein; enolase fold, galacturonate dehydratase, double Mg site, LYA; 1.53A {Paenibacillus SP} PDB: 3v5f_A* 3p3b_A* 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-65 Score=518.91 Aligned_cols=333 Identities=17% Similarity=0.179 Sum_probs=290.2
Q ss_pred eeeEEEEEEEEEEeecccccccc--ceeE-EeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCC
Q 014285 64 WVDVQRAEGRELNVALSAPLSLG--LSSV-ENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSP 140 (427)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~a--~~~~-~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~ 140 (427)
.|||++|+++++++|+++||.++ .|.. +.++.++|+|+|| |++|||||.+.. +++.|.|+|++
T Consensus 11 ~mkI~~i~~~~v~~pl~~~f~~s~~~g~~~~~~~~~~V~i~td-G~~G~GE~~~~~-------------~~l~~~liG~d 76 (392)
T 3v5c_A 11 DWKVEKIEFAKLTGERARSAGANGRIGVHGKSCTVDIARITID-GQTGYGSSIHMT-------------PEWAEDVIGRR 76 (392)
T ss_dssp TCBEEEEEEEEEEEEEEEEECBCSSSCCCEEEEEEEEEEEEET-TEEEEEECCSCC-------------HHHHHTTTTCB
T ss_pred CcEEEEEEEEEEeeecCcccccccccCccCCCceeEEEEEEEc-CCEEEEeecCcH-------------HHHHHHhCCCC
Confidence 59999999999999999999964 7776 6789999999999 999999998631 24678999999
Q ss_pred CCCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCc-----eeeeee-ecCC---------C
Q 014285 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNS-----LSTAIT-IPAV---------S 204 (427)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~-----ip~~~~-i~~~---------~ 204 (427)
+.++.. ..+....++++|||||||||+||.+|+|||+||||. +++ +|+|.+ ++.. +
T Consensus 77 ~~~~~~--------~~~~~~~~A~aaiD~ALwDl~gK~~g~Pv~~LLGG~~r~~~~~v~v~~y~~~~~~~~~~~~~~~~~ 148 (392)
T 3v5c_A 77 LLDLFD--------DRGRLREAYRLQLEYPVLDWLGQRQGKPVYDLVSGAHLETGASLVVPCYDTSLYFDDLHLADERAA 148 (392)
T ss_dssp GGGGBC--------TTSCBCGGGHHHHHHHHHHHHHHHHTCBHHHHHSCCCSCCCCCEEEEEEEEEECBTTTTCCCHHHH
T ss_pred HHHHHh--------hccchHHHHHHHHHHHHHHHHHHHhCCcHHHHcCCCCCcccccceEEEEEeecccccccccccccC
Confidence 876421 123344678999999999999999999999999998 455 898864 3322 3
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeccCC---------chhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCC
Q 014285 205 PAEASELASKYCKLGFSTLKLNVGRN---------ITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMG 274 (427)
Q Consensus 205 ~~~~~~~~~~~~~~Gf~~iKlKiG~~---------~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~ 274 (427)
+++|.+++++++++||++||+|+|.+ +++|++++++||+ ++|++.|+||||++|++++|++++++|++++
T Consensus 149 ~e~~~~~a~~~~~~Gf~~~KlKvg~~~~~~~~~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~w~~~~A~~~~~~L~~~~ 228 (392)
T 3v5c_A 149 VALMQEEAMQGYAKGQRHFKIKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSDVN 228 (392)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEECCTTTTTSCHHHHHHHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCccccccccHHHHHHHHHHHHHHcCCCCcEEeeCCCCcCHHHHHHHHHhcccCC
Confidence 56788888888999999999999973 6899999999999 6999999999999999999999999999998
Q ss_pred CCCceEeCCCCCCChhhHHHHHHhhcc-ccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHH
Q 014285 275 VIPVLFEQPVHRDDWSGLHDVSNFARD-TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRK 352 (427)
Q Consensus 275 l~~~~iEqP~~~~d~~~~~~L~~~~r~-~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~ 352 (427)
+ .|||||++ +|++++++|++.++. .+++|||+||++. ..+++++++.+++|++|+|+++ | ++++++++++|++
T Consensus 229 l--~~iEeP~~-~d~~~~~~l~~~~~~~~~~ipIa~gE~~~-~~~~~~li~~~a~dii~~d~~~-GGitea~kia~~A~~ 303 (392)
T 3v5c_A 229 L--YWLEAAFH-EDEALYEDLKEWLGQRGQNVLIADGEGLA-SPHLIEWATRGRVDVLQYDIIW-PGFTHWMELGEKLDA 303 (392)
T ss_dssp C--CEEECSSS-CCHHHHHHHHHHHHHHTCCCEEEECCSSC-CTTHHHHHHTTSCCEECCBTTT-BCHHHHHHHHHHHHH
T ss_pred C--eEEeCCCC-cCHHHHHHHHHhhccCCCCCcEECCCccc-HHHHHHHHHcCCCcEEEeCCCC-CCHHHHHHHHHHHHH
Confidence 7 59999998 689999999863211 2689999999999 8999999999999999999999 6 9999999999999
Q ss_pred cCCcEEEcccCchhHHHHHHHHHHhhcCCcceeccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 353 SGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 353 ~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+|+++++|++ +|+|++++++|++++++|+.+.|++.++. .+...+++.++||++.+|++||||||+|+++|
T Consensus 304 ~gv~~~~h~~-~s~i~~aa~~hlaaa~p~~~~~e~~~~~~--~~~~~~~~~~~~G~i~vp~~PGlGve~d~~~l 374 (392)
T 3v5c_A 304 HGLRSAPHCY-GNAYGIYASGHLSAAVRNFEFVEYDDITI--EGMDVSGYRIENGEIHVPATPGFGIVFDDELV 374 (392)
T ss_dssp TTCEECCBCC-SCTHHHHHHHHHGGGCTTBCCEEECCEEE--TTEECTTCEEETTEEEECCSSBTSCEECHHHH
T ss_pred cCCeEEecCC-CcHHHHHHHHHHHHhCCCCceEecccchh--hhccCCCCeeECCEEECCCCCCCCccCCHHHH
Confidence 9999999997 89999999999999999999998876542 34556788999999999999999999999875
|
| >4e4f_A Mannonate dehydratase; magnesium binding, enzyme function initiative, isomerase; 2.00A {Pectobacterium carotovorum subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-65 Score=519.61 Aligned_cols=339 Identities=16% Similarity=0.181 Sum_probs=291.7
Q ss_pred eeeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHH-HhhHhcCCCCC
Q 014285 64 WVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVRE-ACQFLRQSPPT 142 (427)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~-~~~~l~g~~~~ 142 (427)
.|||++++++.+. | .++.++|||+||+|++||||+.+. ++.......+++ +.|.|+|+++.
T Consensus 22 ~mkIt~v~~~~~~-----~---------~~~~v~V~v~td~Gi~G~GE~~~~----g~~~~~~~~l~~~l~p~LiG~dp~ 83 (426)
T 4e4f_A 22 SMKIVSAEVFVTC-----P---------GRNFVTLKITTDSGLTGLGDATLN----GRELPVASYLNDHVCPQLIGRDAH 83 (426)
T ss_dssp CCBEEEEEEEEEC-----S---------SSCEEEEEEEETTSCEEEEECCCT----TCHHHHHHHHHHTHHHHHTTSBTT
T ss_pred CcEEEEEEEEEEc-----C---------CCCEEEEEEEECCCCEEEEecccC----CCcHHHHHHHHHHHHHHHcCCChh
Confidence 4999999986542 1 246899999999999999998743 222222333444 78999999999
Q ss_pred CHHHHHHHHHHHC---CCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhhc
Q 014285 143 TLNFALDEIARIL---PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKL 218 (427)
Q Consensus 143 ~~~~~~~~l~~~~---~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~ 218 (427)
+++.+|+.|++.. .|...+++++|||||||||+||.+|+|||+||||. ++++|+|.+....+++++.+++++++++
T Consensus 84 ~ie~i~~~l~~~~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~~~~~~~~~~~~~~ 163 (426)
T 4e4f_A 84 QIEDIWQYFYKGAYWRRGPVTMSAISAVDMALWDIKAKAANMPLYQLLGGASRTGVMVYCHTTGHSIDEVLDDYAKHRDQ 163 (426)
T ss_dssp CHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHTCCSSSSEEEEEEECCSSHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhccccCCccchhhHHHHHHHHHHHhHhHcCCcHHHHcCCCCCCceeEeEeCCCCCHHHHHHHHHHHHHc
Confidence 9999999998753 23234679999999999999999999999999997 6789999987777899999999999999
Q ss_pred CCcEEEEeccCC-c----------------------------------hhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHH
Q 014285 219 GFSTLKLNVGRN-I----------------------------------TADFDVLQAIHA-VHPHCSFILDANEGYTSEE 262 (427)
Q Consensus 219 Gf~~iKlKiG~~-~----------------------------------~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~ 262 (427)
||++||+|+|.+ . +.+++++++||+ .++++.|+||+|++|++++
T Consensus 164 Gf~~iKikvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~avR~a~G~d~~L~vDaN~~~~~~~ 243 (426)
T 4e4f_A 164 GFKAIRVQCGVPGMETTYGMAKGKGLAYEPATKGSLPEEQLWSTEKYLDFTPKLFEAVRDKFGFNEHLLHDMHHRLTPIE 243 (426)
T ss_dssp TCSEEEECC-------------------CCSEESSSCCEEEECHHHHHHHHHHHHHHHHHHHTTSSEEEEECTTCSCHHH
T ss_pred CCCEEEEeccCCccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHH
Confidence 999999999842 1 124689999999 5899999999999999999
Q ss_pred HHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HH
Q 014285 263 AVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VL 341 (427)
Q Consensus 263 A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~ 341 (427)
|+++++.|+++++ .|||||++++|++++++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++
T Consensus 244 A~~~~~~L~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~ga~d~v~~k~~~~GGit 317 (426)
T 4e4f_A 244 AARFGKSVEDYRL--FWMEDPTPAENQACFRLIRQ----HTVTPIAVGEVFNSIWDCKQLIEEQLIDYIRTTITHAGGIT 317 (426)
T ss_dssp HHHHHHHTGGGCC--SEEECCSCCSSGGGGHHHHT----TCCSCEEECTTCCSGGGTHHHHHTTCCSEECCCTTTTTHHH
T ss_pred HHHHHHHHhhcCC--CEEECCCChHHHHHHHHHHh----cCCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeCccccCCHH
Confidence 9999999999997 49999999999999999985 78999999999999999999999999999999999997 99
Q ss_pred HHHHHHHHHHHcCCcEEEcc-cCchhHHHHHHHHHHhhcCCcceeccCCCcccccCCCCCceeeeCcEEecCCCCCcccc
Q 014285 342 GTLQIIKATRKSGLHLMIDG-MIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGF 420 (427)
Q Consensus 342 ~~~~~~~~A~~~gi~~~~~s-~~es~ig~~a~~hlaaal~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve 420 (427)
++++++++|+++|+++++|+ +.+|+|+++|++|++++++|+.+.|++.+.....+++.+++.++||++.+|++||||||
T Consensus 318 ~~~~ia~~A~~~gi~v~~h~~~~~s~i~~aa~~hlaaa~pn~~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGLGve 397 (426)
T 4e4f_A 318 GMRRIADFASLYQVRTGSHGPSDLSPICMAAALHFDLWVPNFGVQEYMGYSEQMLEVFPHSWTFDNGYMHPGEKPGLGIE 397 (426)
T ss_dssp HHHHHHHHHHTTTCEEEECCCTTSCHHHHHHHHHHHHHCTTEEEEECCCCCHHHHHHSCCCCEEETTEEECCSSSBTCCC
T ss_pred HHHHHHHHHHHcCCEEeeeCCCCccHHHHHHHHHHHHhCCCceeEeecCcchhhHhhcCCCceeeCCEEECCCCCCCCcc
Confidence 99999999999999999997 45899999999999999999988888754221123456778999999999999999999
Q ss_pred cCCCcC
Q 014285 421 LKWTIV 426 (427)
Q Consensus 421 ~d~~~v 426 (427)
+|++++
T Consensus 398 ~de~~~ 403 (426)
T 4e4f_A 398 FDEKLA 403 (426)
T ss_dssp CCHHHH
T ss_pred cCHHHH
Confidence 999875
|
| >3p0w_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, protein structure initiative; HET: GKR; 1.71A {Ralstonia pickettii} PDB: 4hn8_A 3nxl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-65 Score=524.58 Aligned_cols=346 Identities=18% Similarity=0.218 Sum_probs=300.9
Q ss_pred eeeEEEEEEEEEEeeccccccccceeE-EeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCC
Q 014285 64 WVDVQRAEGRELNVALSAPLSLGLSSV-ENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPT 142 (427)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~a~~~~-~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~ 142 (427)
.|||++|+++++..| +.+..++.+.. .....++|+|+||+|++||||+.. ++. ....++.+.|.|+|+++.
T Consensus 7 ~~~It~i~~~~v~~~-d~~~~~~~g~h~p~~~~~~V~i~td~Gi~G~GE~~~-----~~~--v~~~i~~l~p~LiG~d~~ 78 (470)
T 3p0w_A 7 TPRVTEMQVIPVAGR-DSMLLNLCGAHAPFFTRNLVILKDNAGRTGVGEVPG-----GEG--IRQALERVIPLVVGQSIG 78 (470)
T ss_dssp CCBEEEEEEEEEEEE-CCCBEETTEECCSEEEEEEEEEEETTSCEEEEEEEC-----CHH--HHHHHHHTGGGTTTCBGG
T ss_pred CCeEEEEEEEEecCC-CcccccccccCCCcceEEEEEEEECCCCEEEEeCCC-----hHH--HHHHHHHHHHHhCCCChh
Confidence 489999999999999 77777776654 457899999999999999999853 122 223356689999999999
Q ss_pred CHHHHHHHHHHHCC-----C-------------------C-----hhhhHHHHHHHHHHHHHHhhCCCChhhhhC-CC-C
Q 014285 143 TLNFALDEIARILP-----G-------------------S-----EFASVRAGVEMALIDAVANSIDIPLWRLFG-GA-S 191 (427)
Q Consensus 143 ~~~~~~~~l~~~~~-----g-------------------~-----~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llg-g~-~ 191 (427)
+++.+|+.|++.+. | . ...++++|||+|||||+||.+|+|||+||| |+ +
T Consensus 79 ~ie~i~~~~~~~~~~~~~~G~~~~~~~~~r~~~p~~~~g~~~~~~~~~~A~sAID~ALWDl~gK~~g~Pv~~LLGgG~~r 158 (470)
T 3p0w_A 79 RTNGVLSSIRRALAGGGNAAHQATVHQVTSASEAAVLRQPHEINLRMDNVITAVEAALLDLLGQFLEVPVAELLGAGQQR 158 (470)
T ss_dssp GHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHHHHHHHHHHTSBGGGTSTTSCCC
T ss_pred hHHHHHHHHHHHHhhcCCCCcccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCC
Confidence 99999999987642 1 0 023789999999999999999999999999 65 7
Q ss_pred Cceeeeeeec-----------------------------CCCHHHHHHHHHHHhh-cCCcEEEEeccC-CchhhHHHHHH
Q 014285 192 NSLSTAITIP-----------------------------AVSPAEASELASKYCK-LGFSTLKLNVGR-NITADFDVLQA 240 (427)
Q Consensus 192 ~~ip~~~~i~-----------------------------~~~~~~~~~~~~~~~~-~Gf~~iKlKiG~-~~~~d~~~l~~ 240 (427)
++||+|.+.. ..+++++.++++++++ +||++||+|+|. +.++|++++++
T Consensus 159 ~~v~~y~~~~~~gd~~~t~~~~~~~~~~~~~w~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~~~~~Di~rv~a 238 (470)
T 3p0w_A 159 DSAPMLAYLFYVGDRRKTDLPYLEGANGADDWLRLRHEAAMTPAAIARLAEAATERYGFADFKLKGGVMPGAEEMEAIAA 238 (470)
T ss_dssp SEEEBCEEECCBCCGGGSCSCCCCCCTTCCHHHHHTTSCBCSHHHHHHHHHHHHHHHCCSEEEEECSSSCHHHHHHHHHH
T ss_pred CeEEEeeeeccccccccccccccccccccccccccccccCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHH
Confidence 8999986531 2578999999999888 699999999996 78999999999
Q ss_pred HHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCC----hhhHHHHHHhhccccCCeEEecCCCCCH
Q 014285 241 IHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDD----WSGLHDVSNFARDTYGISVVADESCRSL 316 (427)
Q Consensus 241 ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d----~~~~~~L~~~~r~~~~iPIa~dE~~~~~ 316 (427)
||+.+|++.|+||||++|++++|++++++|+++ + .|||||++++| ++++++|++ ++++|||+||++.+.
T Consensus 239 vRea~pd~~L~vDaN~~w~~~~Ai~~~~~Le~~-l--~~iEeP~~~~d~~~~~~~~~~l~~----~~~iPIa~dE~~~~~ 311 (470)
T 3p0w_A 239 IKARFPHARVTLDPNGAWSLNEAIALCKGQGHL-V--AYAEDPCGPEAGYSGREVMAEFKR----ATGIPTATNMIATDW 311 (470)
T ss_dssp HHHHCTTSEEEEECTTBBCHHHHHHHHTTCTTT-C--SEEESCBCCBTTBCHHHHHHHHHH----HHCCCEEESSSSCSH
T ss_pred HHHhCCCCeEEeeCCCCCCHHHHHHHHHhcccc-c--eeecCCCChhhccchHHHHHHHHh----cCCCCEEeCCccCCH
Confidence 999889999999999999999999999999998 6 59999999998 689999986 689999999999999
Q ss_pred HHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcceeccCCCccc--
Q 014285 317 NDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLL-- 393 (427)
Q Consensus 317 ~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~~~p~~~-- 393 (427)
.+++++++.+++|++|+|+ ++| ++++++++++|+++|+++++|++.|++|+++|++|++++++|. +.+++.++..
T Consensus 312 ~~~~~~l~~~a~div~~d~-~~GGit~a~kia~lA~a~gv~~~~h~~~e~~I~~aA~~hlaaa~pn~-~~~~d~~~~~~~ 389 (470)
T 3p0w_A 312 RQMGHAVQLHAVDIPLADP-HFWTMQGSVRVAQLCDEWGLTWGSHSNNHFDVSLAMFTHVAAAAPGN-ITAIDTHWIWQE 389 (470)
T ss_dssp HHHHHHHHTTCCSEEBCCH-HHHCHHHHHHHHHHHHHHTCCCBCCCCSCCHHHHHHHHHHHHTCCSC-CCCBCCCHHHHT
T ss_pred HHHHHHHHcCCCCEEEecC-ccCCHHHHHHHHHHHHHcCCEEEecCCcccHHHHHHHHHHHHhCCCc-ceeecccccccc
Confidence 9999999999999999999 676 9999999999999999999999999999999999999999986 4455543321
Q ss_pred -ccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 394 -SEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 394 -~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
..+++.+++.++||++.+|++||||||+|+++|
T Consensus 390 ~~~~l~~~p~~~~dG~i~vP~~PGLGveld~~~l 423 (470)
T 3p0w_A 390 AQERLTREPLRIQGGHVAVPERPGLGIEIDMDRV 423 (470)
T ss_dssp TTCCCBSSCCCEETTEEECCSSSBTSCCBCHHHH
T ss_pred chhhhcCCCceeECCEEECCCCCCcCceeCHHHH
Confidence 246778888999999999999999999999875
|
| >1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-64 Score=509.15 Aligned_cols=340 Identities=16% Similarity=0.220 Sum_probs=301.9
Q ss_pred eeEEEEEEEEEEeecccccc---cc-ceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHH-HhhHhcCC
Q 014285 65 VDVQRAEGRELNVALSAPLS---LG-LSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVRE-ACQFLRQS 139 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~---~a-~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~-~~~~l~g~ 139 (427)
|||++++++.+++|++.||. ++ .++++.++.++|+|+|++|++|||||.+ +.. ....+++ ++|.|+|+
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~~V~v~td~G~~G~GE~~~------~~~-~~~~i~~~l~~~l~g~ 73 (382)
T 1rvk_A 1 MIITDVEVRVFRTTTRRHSDSAGHAHPGPAHQVEQAMLTVRTEDGQEGHSFTAP------EIV-RPHVIEKFVKKVLIGE 73 (382)
T ss_dssp CBEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEETTSCEEEEEECG------GGG-CHHHHHHTHHHHHTTS
T ss_pred CeEeEEEEEEEecCCCCcccccccccccccccceEEEEEEEECCCCEEEEEecC------chH-HHHHHHHHHHHHHcCC
Confidence 79999999999999999998 87 6778889999999999999999999972 111 2333553 88999999
Q ss_pred CCCCHHHHHHHHHHH-C-C-CChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeee--c------CCCHHHH
Q 014285 140 PPTTLNFALDEIARI-L-P-GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITI--P------AVSPAEA 208 (427)
Q Consensus 140 ~~~~~~~~~~~l~~~-~-~-g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i--~------~~~~~~~ 208 (427)
++.+++.+|+.|++. . . +...+++++||||||||++||..|+|||+||||.++++|+|.++ + ..+++++
T Consensus 74 d~~~~~~~~~~l~~~~~~~g~~~~~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~vp~~~~~~~g~~~~~~~~~~e~~ 153 (382)
T 1rvk_A 74 DHRDRERLWQDLAHWQRGSAAQLTDRTLAVVDCALWDLAGRSLGQPVYKLIGGYRDKVLAYGSIMCGDELEGGLATPEDY 153 (382)
T ss_dssp BTTCHHHHHHHHHHHHTTTTTCSCHHHHHHHHHHHHHHHHHHHTCBHHHHHCCSCSEEEEEEEECCCCCCTTTTSSHHHH
T ss_pred ChHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhHhHhCCCHHHHhCCCCCcceecEEeccCccccccCCCHHHH
Confidence 999999999999653 2 1 22246899999999999999999999999999998899999543 3 4689999
Q ss_pred HHHHHHHhhcCCcEEEEeccC-------CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceE
Q 014285 209 SELASKYCKLGFSTLKLNVGR-------NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF 280 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG~-------~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~i 280 (427)
.+.+++++++||+++|+|+|. +++.|++++++||+ .++++.|+||+|++|++++|+++++.|+++++ .||
T Consensus 154 ~~~a~~~~~~Gf~~iKik~g~~~~~~~~~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~i 231 (382)
T 1rvk_A 154 GRFAETLVKRGYKGIKLHTWMPPVSWAPDVKMDLKACAAVREAVGPDIRLMIDAFHWYSRTDALALGRGLEKLGF--DWI 231 (382)
T ss_dssp HHHHHHHHHHTCSEEEEECCCTTSTTCCCHHHHHHHHHHHHHHHCTTSEEEEECCTTCCHHHHHHHHHHHHTTTC--SEE
T ss_pred HHHHHHHHHCCCCEEEEcCCcCccccccchHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCC--CEE
Confidence 999999999999999999996 78999999999999 58999999999999999999999999999997 499
Q ss_pred eCCCCCCChhhHHHHHHhhccccCCeEEecCCCCC-HHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEE
Q 014285 281 EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRS-LNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 281 EqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~-~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~ 358 (427)
|||++++|++++++|++ ++++||++||++.+ ..+++++++.+++|++++|++++| ++++++++++|+++|++++
T Consensus 232 E~P~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~ 307 (382)
T 1rvk_A 232 EEPMDEQSLSSYKWLSD----NLDIPVVGPESAAGKHWHRAEWIKAGACDILRTGVNDVGGITPALKTMHLAEAFGMECE 307 (382)
T ss_dssp ECCSCTTCHHHHHHHHH----HCSSCEEECSSCSSHHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCCEE
T ss_pred eCCCChhhHHHHHHHHh----hCCCCEEEeCCccCcHHHHHHHHHcCCCCEEeeCchhcCCHHHHHHHHHHHHHcCCeEe
Confidence 99999999999999986 68999999999999 999999999999999999999997 9999999999999999999
Q ss_pred EcccCchhHHHHHHHHHHhhcCCcceeccC----------CCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 359 IDGMIETRLATGFALHLAAGLGCIKYVNLN----------TPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 359 ~~s~~es~ig~~a~~hlaaal~~~~~~e~~----------~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+| +.|++ ++|++++++++.+.|+. .|++ .++++ +++. +||++.+|++||||+++|++++
T Consensus 308 ~~-~~~~~-----~~~laaa~~~~~~~E~~~~~~~~~~~~~~~~-~~d~~-~~~~-~~G~~~~p~~PGlGv~~d~~~l 376 (382)
T 1rvk_A 308 VH-GNTAM-----NLHVVAATKNCRWYERGLLHPFLEYDDGHDY-LKSLS-DPMD-RDGFVHVPDRPGLGEDIDFTFI 376 (382)
T ss_dssp EC-CCSHH-----HHHHHHHCSSCCCEEEEEECTTSCGGGCCTT-BSSCS-SCBC-TTSEEECCSCSBTCCCBCHHHH
T ss_pred ec-CCCCH-----HHHHHHhCCccceeeeccccccccccccchh-HHhhc-cCCC-cCCEEECCCCCCCccccCHHHH
Confidence 99 67876 88999999998777654 3433 56777 7788 9999999999999999999865
|
| >3mzn_A Glucarate dehydratase; lyase, structural genomics, protein structure initiative, PS nysgrc; 1.85A {Chromohalobacter salexigens} PDB: 3nfu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-64 Score=521.12 Aligned_cols=346 Identities=16% Similarity=0.227 Sum_probs=299.8
Q ss_pred eeeEEEEEEEEEEeecccccccccee-EEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCC
Q 014285 64 WVDVQRAEGRELNVALSAPLSLGLSS-VENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPT 142 (427)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~a~~~-~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~ 142 (427)
.++|++|+++++..+ ..|..+..|. -.....++|+|+||+|++||||+.. ++. ....++.+.|.|+|+++.
T Consensus 4 ~~~It~v~~~~v~~~-d~~~~~~~g~~~~~~~~~iV~v~td~Gi~G~GE~~~-----~~~--v~~~i~~l~p~LiG~dp~ 75 (450)
T 3mzn_A 4 FPKITKMNVVPVAGE-DGFLLNLSGGHEPWFIRCVLVLEDESGNRGVGEIPS-----SEG--ILNGLEKCRSLVEGARVN 75 (450)
T ss_dssp CCBEEEEEEEEEEEE-CCCBEETTEECCSEEEEEEEEEEETTSCEEEEEEEC-----CHH--HHHHHHHTHHHHTTCBGG
T ss_pred CCEEEEEEEEEeccc-CccccccccCCCCcceEEEEEEEECCCCEEEEeCCC-----cHH--HHHHHHHHHHHhCCCChh
Confidence 479999999999988 6666655554 3456788999999999999999853 121 223356689999999999
Q ss_pred CHHHHHHHHHHHCC-------CC------hhhhHHHHHHHHHHHHHHhhCCCChhhhhC--CC-CCceeeeeee------
Q 014285 143 TLNFALDEIARILP-------GS------EFASVRAGVEMALIDAVANSIDIPLWRLFG--GA-SNSLSTAITI------ 200 (427)
Q Consensus 143 ~~~~~~~~l~~~~~-------g~------~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llg--g~-~~~ip~~~~i------ 200 (427)
+++.+|+.|++.+. |. ...++++|||+|||||+||.+|+|||+||| |+ +++||+|.+.
T Consensus 76 ~ie~i~~~~~~~~~~~~~g~~G~~~~~~~~~~~A~sAID~ALwDl~gK~~g~Pv~~LLG~~G~~r~~v~~y~~~~~~gd~ 155 (450)
T 3mzn_A 76 EVKQVLSRARGLLAQGGPEERGRQTFDLRVAVHVITAIESALFDLFGQALGMPVADLLGQYGRQRDEVEALGYLFLLGDP 155 (450)
T ss_dssp GHHHHHHHHHHHHGGGCCCCCCSSSSCCCSHHHHHHHHHHHHHHHHHHHHTCBGGGGSTTTCCCCSEEEBCEEEECBCCG
T ss_pred hHHHHHHHHHHHhhcccCCCcccccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCcCceEEeeeeecccccc
Confidence 99999999987532 11 246799999999999999999999999999 54 7899997642
Q ss_pred -----------------------cCCCHHHHHHHHHHHhh-cCCcEEEEeccC-CchhhHHHHHHHHHhCCCcEEEEeCC
Q 014285 201 -----------------------PAVSPAEASELASKYCK-LGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDAN 255 (427)
Q Consensus 201 -----------------------~~~~~~~~~~~~~~~~~-~Gf~~iKlKiG~-~~~~d~~~l~~ir~~~~~~~L~vDAN 255 (427)
+..+++++.++++++++ +||++||+|+|. +.++|++++++||+.+|++.|+||||
T Consensus 156 ~~t~~~~~s~~~~~~~w~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~~~~~Di~~v~avRea~pd~~L~vDaN 235 (450)
T 3mzn_A 156 DKTDLPYPRVADPVDAWDEVRYREAMTPEAVANLARAAYDRYGFKDFKLKGGVLRGEEEADCIRALHEAFPEARLALDPN 235 (450)
T ss_dssp GGSSSCCCCCSSCCSHHHHHTTSCBCSHHHHHHHHHHHHHHHCCSEEEEECSSSCHHHHHHHHHHHHHHCTTSEEEEECT
T ss_pred ccccccccccccccccccccccccCCCHHHHHHHHHHHHHhCCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEECC
Confidence 13479999999999887 699999999996 78999999999999889999999999
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCC----hhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEE
Q 014285 256 EGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDD----WSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVV 331 (427)
Q Consensus 256 ~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d----~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i 331 (427)
++|++++|+++++.|+++ + .|||||++++| +++|++|++ ++++|||+||++.+..+++++++.+++|++
T Consensus 236 ~~w~~~~A~~~~~~L~~~-i--~~iEeP~~~~d~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~di~ 308 (450)
T 3mzn_A 236 GAWKLDEAVRVLEPIKHL-L--SYAEDPCGQEGGFSGRETMAEFKK----RTGLPTATNMIATDYKQLQYAVQLNSVDIP 308 (450)
T ss_dssp TCBCHHHHHHHHGGGGGG-C--SEEESSBCCBTTBCHHHHHHHHHH----HHCCCEEESSSSSSHHHHHHHHHHTCCSEE
T ss_pred CCCCHHHHHHHHHHhhhc-c--ceeeCCCCcccccchHHHHHHHHH----hcCCCEEeCCccCCHHHHHHHHHcCCCCEE
Confidence 999999999999999998 6 49999999998 689999986 689999999999999999999999999999
Q ss_pred EeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcceeccCCCcccc--cCCCCCceeeeCcE
Q 014285 332 NIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLS--EDPFVGGCEVSGAI 408 (427)
Q Consensus 332 ~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~~~p~~~~--~~~~~~~~~~~~G~ 408 (427)
|+|+ ++| ++++++++++|+++|+++++|++.+++|+++|++|++++++|. +.+++.++... .+++.+++.++||+
T Consensus 309 ~~d~-~~GGit~a~kia~lA~a~gv~~~~h~~~~~~I~~aA~~hlaaa~p~~-~~~~d~~~~~~~~~~l~~~~~~~~~G~ 386 (450)
T 3mzn_A 309 LADC-HFWTMQGAVAVGELCNEWGMTWGSHSNNHFDISLAMMTHVAAACPGE-ITAIDTHWIWQDGQRITREPFQIRDGK 386 (450)
T ss_dssp BCCH-HHHCHHHHHHHHHHHHHTTCCCBCCCCSCCHHHHHHHHHHHHTCCSC-CCCBCCCHHHHTTCCSBSSCCCCBTTE
T ss_pred EecC-ccCCHHHHHHHHHHHHHcCCEEEecCCcccHHHHHHHHHHHHhCCCc-chhhccccccccccccccCCCeEECCE
Confidence 9998 676 9999999999999999999999999999999999999999986 45566554322 36777888999999
Q ss_pred EecCCCCCcccccCCCcC
Q 014285 409 YNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 409 i~~p~~pGlGve~d~~~v 426 (427)
+.+|++||||||+|+++|
T Consensus 387 i~vp~~PGLGveld~~~l 404 (450)
T 3mzn_A 387 LTVPKTPGLGIELDDDKL 404 (450)
T ss_dssp EECCCSSBTSCCBCHHHH
T ss_pred EECCCCCcCCCccCHHHH
Confidence 999999999999999875
|
| >4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-64 Score=513.44 Aligned_cols=335 Identities=15% Similarity=0.157 Sum_probs=281.7
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCCCH
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTL 144 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~~~ 144 (427)
|||++|+++.++ ..++.++|||+||+|++||||+.. +++.... ...+.+.|.|+|++|.++
T Consensus 1 MkIt~ie~~~~~--------------~~~~~~~V~v~td~G~~G~GE~~~----~~~~~~~-~i~~~l~p~liG~dp~~~ 61 (400)
T 4dxk_A 1 MKITKLETVRVA--------------ERTNLLWVLVHTDEGITGLGETFF----GAETVET-YVHEYIAPRVIGRDPLQI 61 (400)
T ss_dssp CCEEEEEEEEET--------------TSTTEEEEEEEETTSCCEEEEEES----CHHHHHH-HHHHTHHHHHTTSCTTCH
T ss_pred CeEEEEEEEEEC--------------CCCCEEEEEEEECCCCEEEEcCCC----CccHHHH-HHHHHHHHHhCCCCcchH
Confidence 899999997764 124679999999999999999542 2222221 123458899999999999
Q ss_pred HHHHHHHHHHCCC----ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecC-----------------
Q 014285 145 NFALDEIARILPG----SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPA----------------- 202 (427)
Q Consensus 145 ~~~~~~l~~~~~g----~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~----------------- 202 (427)
+.+|+.| ..+.| ...+++++|||||||||+||.+|+|||+||||. +++||+|.++..
T Consensus 62 ~~~~~~~-~~~~~~~~~g~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~yas~~~~~~~~~~~~~~~~~~~~ 140 (400)
T 4dxk_A 62 DLLAQDL-VGYLGFRSSGAEVRGNSAFDIALWDIFGKATNQPIAQLLGGFSRREIRTYNTCAGTEYIKKATGQQTANYGL 140 (400)
T ss_dssp HHHHHHH-CCSSSCSSCSHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSCEEEEBC--------------------
T ss_pred HHHHHHH-HHHhccCCchHHHHHHHHHHHHHHHHhHhHcCCcHHHHhCCCccCceeEEEecccccccccccccccccccc
Confidence 9999999 43322 234679999999999999999999999999997 789999975431
Q ss_pred --CCHHH--------HHHHHHHHhhcCCcEEEEeccC--------------CchhhHHHHHHHHHh-CCCcEEEEeCCCC
Q 014285 203 --VSPAE--------ASELASKYCKLGFSTLKLNVGR--------------NITADFDVLQAIHAV-HPHCSFILDANEG 257 (427)
Q Consensus 203 --~~~~~--------~~~~~~~~~~~Gf~~iKlKiG~--------------~~~~d~~~l~~ir~~-~~~~~L~vDAN~~ 257 (427)
.++++ ..+.+++++++||++||+|+|. +++.|++++++||+. ++++.|+||+|++
T Consensus 141 ~~~~~~~~~~g~~~~~~~~a~~~~~~G~~~~Kik~g~~~~~~~~~g~~~~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~ 220 (400)
T 4dxk_A 141 SGGKDYDDLNGFLHRADELAHSLLEDGITAMKIWPFDAAAEKTRGQYISMPDLKSALEPFEKIRKAVGDKMDIMVEFHSM 220 (400)
T ss_dssp --------------CHHHHHHHHHHTTCCEEEECTTHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHGGGSEEEEECTTC
T ss_pred cccccchhcccccccHHHHHHHHHHhCCCEEEEcCCCccccccccCcCCHHHHHHHHHHHHHHHHHcCCCceEEEECCCC
Confidence 12222 2445667889999999999971 367899999999994 7899999999999
Q ss_pred CCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCC
Q 014285 258 YTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK 337 (427)
Q Consensus 258 ~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~ 337 (427)
|++++|++++++|+++++ .|||||++++|++++++|++ ++++||++||++.+..+++++++.+++|++|+|+++
T Consensus 221 ~~~~~A~~~~~~L~~~~i--~~iEeP~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~a~d~v~~d~~~ 294 (400)
T 4dxk_A 221 WQLLPAMQIAKALTPYQT--FWHEDPIKMDSLSSLTRYAA----VSPAPISASETLGSRWAFRDLLETGAAGVVMLDISW 294 (400)
T ss_dssp BCHHHHHHHHHHTGGGCC--SEEECCBCTTSGGGHHHHHH----HCSSCEEECTTCCHHHHHHHHHHTTCCCEEEECTTT
T ss_pred CCHHHHHHHHHHHhhcCC--CEEEcCCCcccHHHHHHHHH----hCCCCEEecCCcCCHHHHHHHHHcCCCCEEEeCccc
Confidence 999999999999999997 49999999999999999986 689999999999999999999999999999999999
Q ss_pred cc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcceecc-CC-CcccccCCCCCceeeeCcEEecCCC
Q 014285 338 FG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNL-NT-PFLLSEDPFVGGCEVSGAIYNFTNA 414 (427)
Q Consensus 338 ~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~-~~-p~~~~~~~~~~~~~~~~G~i~~p~~ 414 (427)
+| ++++++++++|+++|+++++|++. |+|+++|++|++++++|+.+.|. +. ...+.++++.+++.++||++.+|++
T Consensus 295 ~GGit~~~kia~~A~~~gi~~~~h~~~-s~i~~aa~~hlaaa~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~G~i~~p~~ 373 (400)
T 4dxk_A 295 CGGLSEARKIASMAEAWHLPVAPHXCT-GPVVLCASTHLSLNAPNALVQESVRAFYKTWYRDLVTALPEVKNGMITVPPG 373 (400)
T ss_dssp TTHHHHHHHHHHHHHHTTCCEEEC-CC-CHHHHHHHHHHHHHCTTBCCEECCTTC-CCTHHHHBSCCCEEETTEEECCSS
T ss_pred cCCHHHHHHHHHHHHHcCCEEEecCCC-ChHHHHHHHHHHHhCCCceeEEecccccchhhHhhcCCCCeeeCCEEECCCC
Confidence 97 999999999999999999999875 99999999999999999988773 31 1223456778888999999999999
Q ss_pred CCcccccCCCcC
Q 014285 415 RGQGGFLKWTIV 426 (427)
Q Consensus 415 pGlGve~d~~~v 426 (427)
||||+|+|++++
T Consensus 374 PGlGveld~~~l 385 (400)
T 4dxk_A 374 AGLGMELHPDIE 385 (400)
T ss_dssp SBTSCCBCTTGG
T ss_pred CCCCCcCCHHHH
Confidence 999999999976
|
| >3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-64 Score=515.72 Aligned_cols=345 Identities=15% Similarity=0.191 Sum_probs=298.1
Q ss_pred eeeEEEEEEEEEEeeccc----------------cccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHH
Q 014285 64 WVDVQRAEGRELNVALSA----------------PLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALV 127 (427)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~----------------p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~ 127 (427)
.|||++|+.+.+..+-.. .+..+.++++.++.++|+|+||+|++||||+++.+. ....
T Consensus 22 ~m~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~lV~v~td~G~~G~GE~~~~~~------~~~~ 95 (412)
T 3stp_A 22 SMKIKSVRTRVWTWKGPTVPPQGNFCTNASDALWMKGDAMSSFRFHQWLTCEVETEDGTIGIGNAALAPS------VVKK 95 (412)
T ss_dssp -CCEEEEEEEEEEECSCCCCCCSSSCCCGGGGSCCCSCTTTTTCCCEEEEEEEEETTSCEEEEEECSSHH------HHHH
T ss_pred ccEEEEEEEEEEeccCCCCCCCCCCCCCchhccCCCCCcceEEEeccEEEEEEEECCCCEEEEeccCCHH------HHHH
Confidence 389999999998763211 133566777788899999999999999999965321 1223
Q ss_pred HHHH-HhhHhcCCCCCCHHHHHHHHHHHCC----CChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeee-
Q 014285 128 KVRE-ACQFLRQSPPTTLNFALDEIARILP----GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITI- 200 (427)
Q Consensus 128 ~~~~-~~~~l~g~~~~~~~~~~~~l~~~~~----g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i- 200 (427)
.+++ +.|.|+|++|.+++.+|+.|++... +...+++++|||||||||+||.+|+|||+||||. ++++|+|.++
T Consensus 96 ~i~~~l~p~LiG~dp~~~e~l~~~~~~~~~~~g~~g~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~s~~ 175 (412)
T 3stp_A 96 VIDDWYAPLVIGEDPFDYAYIWEKMYRRSHAWGRKGIGMTAISAIDIAIWDLMGKLVGKPVFKLLGGRTKDRIPVYYSKL 175 (412)
T ss_dssp HHHHTTHHHHTTSCGGGHHHHHHHHHHHTHHHHSSTHHHHHHHHHHHHHHHHHHHHTTCBHHHHHTCCSSSSEEEEEECC
T ss_pred HHHHHHHHHHCCCCcchHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcCCCHHHhcCCCCCceEEEEEEec
Confidence 3455 7899999999999999999986531 1234679999999999999999999999999998 8899999984
Q ss_pred cCCCHHHHHHHHHHHhhcCCcEEEEeccCC-------chhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhh
Q 014285 201 PAVSPAEASELASKYCKLGFSTLKLNVGRN-------ITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLND 272 (427)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~-------~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~ 272 (427)
...+++++.+.+++++++||++||+|+|.+ ++.|++++++||+ +++++.|+||+|++|++++|++++++|++
T Consensus 176 ~~~~~e~~~~~a~~~~~~Gf~~iKik~g~gp~dg~~~~~~die~v~avReavG~d~~L~vDaN~~~~~~~Ai~~~~~Le~ 255 (412)
T 3stp_A 176 YAGSIEAMQKEAEEAMKGGYKAFKSRFGYGPKDGMPGMRENLKRVEAVREVIGYDNDLMLECYMGWNLDYAKRMLPKLAP 255 (412)
T ss_dssp CSCCHHHHHHHHHHHHTTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCcccccchHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 556899999999999999999999999863 5789999999999 58999999999999999999999999999
Q ss_pred CCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHH
Q 014285 273 MGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATR 351 (427)
Q Consensus 273 ~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~ 351 (427)
+++ .|||||++++|++++++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+
T Consensus 256 ~~i--~~iEeP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~li~~~a~D~v~ik~~~~GGit~a~kia~~A~ 329 (412)
T 3stp_A 256 YEP--RWLEEPVIADDVAGYAELNA----MNIVPISGGEHEFSVIGCAELINRKAVSVLQYDTNRVGGITAAQKINAIAE 329 (412)
T ss_dssp GCC--SEEECCSCTTCHHHHHHHHH----TCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHTHHHHHHHHHHHHH
T ss_pred cCC--CEEECCCCcccHHHHHHHHh----CCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecChhhcCCHHHHHHHHHHHH
Confidence 997 49999999999999999986 68999999999999999999999999999999999997 999999999999
Q ss_pred HcCCcEEEcccCchhHHHHHHHHHHhhcCCcceeccC------CCcccccCCCCCceeeeCcEEecCCC-CCcccccCCC
Q 014285 352 KSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLN------TPFLLSEDPFVGGCEVSGAIYNFTNA-RGQGGFLKWT 424 (427)
Q Consensus 352 ~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~~------~p~~~~~~~~~~~~~~~~G~i~~p~~-pGlGve~d~~ 424 (427)
++|+++++|+ +.++++|++++.+|..+.|+. ....+.++++.+++.++||++.+|++ ||||+|+|++
T Consensus 330 a~gi~v~~h~------~~aa~~hlaaA~~~~~~~e~~~~~d~~~~~~l~~~~~~~~~~~~~G~i~vp~~~PGlGveld~~ 403 (412)
T 3stp_A 330 AAQIPVIPHA------GQMHNYHLTMANTNCPISEYFPVFDVEVGNELFYYIFEGDPEAVDGYLQLDDDLPGLGIAISDK 403 (412)
T ss_dssp HHTCCBCCSS------CSHHHHHHHHTCTTCCCEEECCCCSSSSSTTTHHHHEECCCCCBTTEECCCSSSCBTSCEECCT
T ss_pred HcCCEEEecc------HHHHHHHHHHhCCCCceEEecccccccccchhhhhhccCCCcccCCEEEcCCCCCcccccCCHH
Confidence 9999999998 457899999888887665543 22233455677788899999999999 9999999999
Q ss_pred cC
Q 014285 425 IV 426 (427)
Q Consensus 425 ~v 426 (427)
+|
T Consensus 404 ~l 405 (412)
T 3stp_A 404 HL 405 (412)
T ss_dssp TG
T ss_pred HH
Confidence 86
|
| >3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-64 Score=512.49 Aligned_cols=336 Identities=16% Similarity=0.189 Sum_probs=292.6
Q ss_pred eeeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCCC
Q 014285 64 WVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTT 143 (427)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~~ 143 (427)
.|||++|+++.++.+ .++.++|+|+||+|++||||+.+. ++.+... ..++.+.|.|+|+++.+
T Consensus 2 ~MkI~~i~~~~~~~~-------------~~~~~~V~v~td~G~~G~GE~~~~--~~~~~~~--~~i~~l~p~liG~d~~~ 64 (409)
T 3go2_A 2 SLKVVSVDTLCCDAG-------------WRNYHFVKLTTDEGIVGWSEFDEG--FGSPGVT--AVIEQLGKRLVGASVME 64 (409)
T ss_dssp CCBEEEEEEEEEECS-------------SSEEEEEEEEETTCCEEEEEECST--TTCTTHH--HHHHHHHHHHTTSBTTC
T ss_pred CCEEEEEEEEEECCC-------------CccEEEEEEEECCCCEEEEeecCC--CCcHHHH--HHHHHHHHHhcCCChhh
Confidence 399999999877542 246799999999999999998753 3332222 23466899999999999
Q ss_pred HHHHHHHHHHHCC---CChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeee--------------cCCCH
Q 014285 144 LNFALDEIARILP---GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITI--------------PAVSP 205 (427)
Q Consensus 144 ~~~~~~~l~~~~~---g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i--------------~~~~~ 205 (427)
++.+|+.|++... +...+++++|||||||||+||.+|+|||+||||. +++||+|++. +..++
T Consensus 65 ~e~~~~~~~~~~~~~~~g~~~~A~saID~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~s~~~~~~i~~~~~~~~~~~~~ 144 (409)
T 3go2_A 65 HERFFAEAYCLTRPATGGVVSEGIGAIENALLDAKAKTLNVPCYELLGGKLRDRVPVYWSHCPTWRINHPKFFGPPVTDL 144 (409)
T ss_dssp HHHHHHHHHHHHGGGCSHHHHHHHHHHHHHHHHHHHHHHTSBGGGGTTCCSCSEEEEEECSTTHHHHHCTTTSSSCCCSH
T ss_pred HHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHhHHHcCCcHHHHcCCCCCCeEEEEEeecCccccccccccccCCCCH
Confidence 9999999987532 2235679999999999999999999999999997 7999999653 34689
Q ss_pred HHHHHHHHHHhhcCCcEEEEec-------------cCC-------------chhhHHHHHHHHH-hCCCcEEEEeCCCCC
Q 014285 206 AEASELASKYCKLGFSTLKLNV-------------GRN-------------ITADFDVLQAIHA-VHPHCSFILDANEGY 258 (427)
Q Consensus 206 ~~~~~~~~~~~~~Gf~~iKlKi-------------G~~-------------~~~d~~~l~~ir~-~~~~~~L~vDAN~~~ 258 (427)
+++.+.+++++++||++||+|+ |.+ ++.|++++++||+ +++++.|+||+|++|
T Consensus 145 e~~~~~a~~~~~~Gf~~iKlKv~~~~~~~~~~~~pG~~~~~~~~~~~~~~~~~~~~e~v~avR~avG~d~~l~vDaN~~~ 224 (409)
T 3go2_A 145 DGVKRTAEEARERQFRAIKTNIFIHDDGPLHAWRPGFAVPFQPALNVDRKVLRNLRAHLEALRDGAGPDVEILLDLNFNA 224 (409)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCEECSSSSCEECBGGGTBSCCTTCCCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCS
T ss_pred HHHHHHHHHHHHcCCCEEEEcccccccccccccccCCCccCCcccccchHHHHHHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 9999999999999999999999 521 3467899999999 589999999999999
Q ss_pred CHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCc
Q 014285 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF 338 (427)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~ 338 (427)
++++|+++++.|+++++ .|||||+. |++++++|++ ++++||++||++.+..+++++++.+++|++|+|+++
T Consensus 225 ~~~~A~~~~~~L~~~~i--~~iE~P~~--d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~- 295 (409)
T 3go2_A 225 KPEGYLKILRELADFDL--FWVEIDSY--SPQGLAYVRN----HSPHPISSCETLFGIREFKPFFDANAVDVAIVDTIW- 295 (409)
T ss_dssp CHHHHHHHHHHTTTSCC--SEEECCCS--CHHHHHHHHH----TCSSCEEECTTCCHHHHHHHHHHTTCCSEEEECHHH-
T ss_pred CHHHHHHHHHHHhhcCC--eEEEeCcC--CHHHHHHHHh----hCCCCEEeCCCcCCHHHHHHHHHhCCCCEEEeCCCC-
Confidence 99999999999999997 49999984 8999999986 689999999999999999999999999999999999
Q ss_pred c-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcceeccCC-CcccccCCCCCceeeeCcEEecCCCCC
Q 014285 339 G-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNT-PFLLSEDPFVGGCEVSGAIYNFTNARG 416 (427)
Q Consensus 339 G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~~~-p~~~~~~~~~~~~~~~~G~i~~p~~pG 416 (427)
| ++++++++++|+++|+++++|+ +||+|+++|++|++++++|+.++|++. +..+.++++.+++.++||++.+|++||
T Consensus 296 GGit~~~~ia~~A~~~gi~~~~h~-~~s~i~~aa~~hlaaa~p~~~~~E~~~~~~~~~~d~~~~~~~~~~G~i~~p~~PG 374 (409)
T 3go2_A 296 NGVWQSMKIAAFADAHDINVAPHN-FYGHLCTMINANFAAAVPNLRIMETDIDRLAWEDELFTHAPEYQNGELIIPDRPG 374 (409)
T ss_dssp HCHHHHHHHHHHHHHTTCEEEECC-CSCHHHHHHHHHHHHHCSSBCCEEECCCCCTTHHHHBSCCCCEETTEEECCCSSB
T ss_pred CCHHHHHHHHHHHHHcCCEEeecC-CCcHHHHHHHHHHHHcCCCCeEEEeeCCcchhhhhhccCCCeeECCEEECCCCCC
Confidence 8 9999999999999999999985 799999999999999999998876553 233456778888899999999999999
Q ss_pred cccccCCCcC
Q 014285 417 QGGFLKWTIV 426 (427)
Q Consensus 417 lGve~d~~~v 426 (427)
||||+|+++|
T Consensus 375 lGveld~~~l 384 (409)
T 3go2_A 375 WGTDPVEEAI 384 (409)
T ss_dssp SSCCBCHHHH
T ss_pred CCcccCHHHH
Confidence 9999999865
|
| >3pfr_A Mandelate racemase/muconate lactonizing protein; emolase superfamily fold, D-glucarate dehydratase, D-glucara isomerase; HET: GKR; 1.90A {Actinobacillus succinogenes} PDB: 3n6j_A 3n6h_A* 4gyp_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-64 Score=518.63 Aligned_cols=346 Identities=16% Similarity=0.179 Sum_probs=297.7
Q ss_pred eeeEEEEEEEEEEeeccccccccceeE-EeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCC
Q 014285 64 WVDVQRAEGRELNVALSAPLSLGLSSV-ENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPT 142 (427)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~a~~~~-~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~ 142 (427)
.++|++++++++..+ ..|+.+..|.. +....++|+|+||+|++||||+.. ++. ....++.+.|.|+|+++.
T Consensus 8 ~~~It~v~v~~v~~~-d~~~~~~~g~h~~~~~~~iV~v~td~Gi~G~GE~~~-----~~~--v~~~i~~l~p~LiG~dp~ 79 (455)
T 3pfr_A 8 VPVITDMKVIPVAGH-DSMLMNVGGAHSPYFTRNIVILTDNSGHTGVGEAPG-----GAT--IENALTEAIPHVVGRPIS 79 (455)
T ss_dssp CCBEEEEEEEEEEEE-CCCBEETTEECCSEEEEEEEEEEETTSCEEEEEEEC-----SHH--HHHHHHHHGGGTTTCBGG
T ss_pred CCEEEEEEEEEeccC-CccccccccCCCCcceEEEEEEEECCCCEEEEeCCC-----cHH--HHHHHHHHHHHhcCCChh
Confidence 489999999999999 77777766654 346778999999999999999853 122 223356689999999999
Q ss_pred CHHHHHHHHHH--HCCC-------Ch----hhhHHHHHHHHHHHHHHhhCCCChhhhhC-CC-CCceeeeeeec------
Q 014285 143 TLNFALDEIAR--ILPG-------SE----FASVRAGVEMALIDAVANSIDIPLWRLFG-GA-SNSLSTAITIP------ 201 (427)
Q Consensus 143 ~~~~~~~~l~~--~~~g-------~~----~~~a~~aie~Al~Dl~gk~~g~Pl~~Llg-g~-~~~ip~~~~i~------ 201 (427)
+++.+|+.|++ .+.+ .. ..++++|||+|||||+||.+|+|||+||| |+ +++||+|.+..
T Consensus 80 ~ie~i~~~~~~~~~~~~~~~g~~G~~~~~~~~~A~sAID~ALWDl~gK~~g~Pv~~LLGgG~~r~~v~~y~~~~~~gd~~ 159 (455)
T 3pfr_A 80 ILNKIVNDMHNGYLDADYDTFGKGAWTFELRVNAVAALEAALLDLMGQFLGVPVAELLGPGKQRDEVTVLGYLFYVGDDK 159 (455)
T ss_dssp GHHHHHHHHHC---------------CHHHHHHHHHHHHHHHHHHHHHHHTSBGGGGSTTSCCCSEEEBCEEECCBCCGG
T ss_pred HHHHHHHHHHhhccccccCCCCcccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCcCCeEEEeeeeccccccc
Confidence 99999999987 4321 10 16799999999999999999999999999 65 78999976421
Q ss_pred -----------------------CCCHHHHHHHHHHHhh-cCCcEEEEeccC-CchhhHHHHHHHHHhCCCcEEEEeCCC
Q 014285 202 -----------------------AVSPAEASELASKYCK-LGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANE 256 (427)
Q Consensus 202 -----------------------~~~~~~~~~~~~~~~~-~Gf~~iKlKiG~-~~~~d~~~l~~ir~~~~~~~L~vDAN~ 256 (427)
..+++++.++++++++ +||++||+|+|. +.++|++++++||+.+|++.|+||||+
T Consensus 160 ~~~~~~~~s~~~~~~w~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~~~~~Di~~v~avRea~pd~~L~vDaN~ 239 (455)
T 3pfr_A 160 ITDLPYQQPVTGKHEWYDIRRKKAMDTQAVIELAAASKDRYGFKDFKLKGGVFEGSKEIDTVIELKKHFPDARITLDPNG 239 (455)
T ss_dssp GSCSCCCCCCCSSCTHHHHTTSCBCSHHHHHHHHHHHHHHHCCSCEEEECSSSCHHHHHHHHHHHHHHCTTCCEEEECTT
T ss_pred cccccccccccccccccccccccCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCHHHHHHHHHHHHHhCCCCeEeecCCC
Confidence 2478999999998887 699999999996 789999999999998899999999999
Q ss_pred CCCHHHHHHHHHHhhhCCCCCceEeCCCCCCC----hhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEE
Q 014285 257 GYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDD----WSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVN 332 (427)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d----~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~ 332 (427)
+|++++|++++++|+++ + .|||||++++| +++|++|++ ++++|||+||++.+..+++++++.+++|++|
T Consensus 240 ~w~~~~A~~~~~~L~~~-l--~~iEeP~~~~d~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~di~~ 312 (455)
T 3pfr_A 240 CWSLDEAIQLCKGLNDV-L--TYAEDPCIGENGYSGREIMAEFRR----RTGIPTATNMIATNWREMCHAIMLQSVDIPL 312 (455)
T ss_dssp BSCHHHHHHHHTTCTTT-C--SEEESCBCCBTTBCHHHHHHHHHH----HHCCCEEESSSCCSHHHHHHHHHHTCCSEEB
T ss_pred CCCHHHHHHHHHhhccc-c--eeeecCCChhhccchHHHHHHHHh----cCCCCEEeCCCcCCHHHHHHHHHcCCCCEEE
Confidence 99999999999999998 6 49999999998 689999986 6899999999999999999999999999999
Q ss_pred eCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcceeccCCCcccc---cCCCCCceeeeCcE
Q 014285 333 IKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLS---EDPFVGGCEVSGAI 408 (427)
Q Consensus 333 lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~~~p~~~~---~~~~~~~~~~~~G~ 408 (427)
+|+ ++| ++++++++++|+++|+++++|++.+++|+++|++|++++++|. +.+++.++... .+++.+++.++||+
T Consensus 313 ~d~-~~GGit~a~kia~lA~a~gv~~~~h~~~~~~i~~aa~~hlaaa~p~~-~~~~d~~~~~~~~~~~l~~~p~~~~dG~ 390 (455)
T 3pfr_A 313 ADP-HFWTLTGASRVAQLCNEWGLTWGCHSNNHFDISLAMFSHVGAAAPGN-PTALDTHWIWQEGDFYLTKNPLEIKDGK 390 (455)
T ss_dssp CCH-HHHCHHHHHHHHHHHHHTTCCCBCCCCSCCHHHHHHHHHHHHHCCSC-CCCBCCCGGGTTTTCCSBSSCCCEETTE
T ss_pred ecC-CcCCHHHHHHHHHHHHHcCCEEEecCCcccHHHHHHHHHHHHhCCCc-chhhccccccccchhhccCCCCeEECCE
Confidence 998 676 9999999999999999999999999999999999999999986 33444433221 46777888999999
Q ss_pred EecCCCCCcccccCCCcC
Q 014285 409 YNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 409 i~~p~~pGlGve~d~~~v 426 (427)
+.+|++||||||+|+++|
T Consensus 391 i~vp~~PGLGveld~~~l 408 (455)
T 3pfr_A 391 IKLNDKPGLGIELNMDNV 408 (455)
T ss_dssp EECCSCSBTCCCBCHHHH
T ss_pred EeCCCCCcCCcccCHHHH
Confidence 999999999999999875
|
| >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-63 Score=506.59 Aligned_cols=344 Identities=18% Similarity=0.205 Sum_probs=299.0
Q ss_pred eeeEEEEEEEEEEeeccccccccce------eEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhc
Q 014285 64 WVDVQRAEGRELNVALSAPLSLGLS------SVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLR 137 (427)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~a~~------~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~ 137 (427)
.|||++++++.+++|++.||.++.+ +.+.++.++|+|+|++|++|||||. .+.++.+ .....++.++|.|+
T Consensus 12 ~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~~~~~v~V~v~td~G~~G~GE~~-~~~~~~~--~~~~~i~~l~~~l~ 88 (393)
T 2og9_A 12 SDRITWVRISSCYLPLATPISDAKVLTGRQKPMTEIAILFAEIETAGGHQGLGFSY-SKRAGGP--GQFAHAREIAPALI 88 (393)
T ss_dssp CCCEEEEEEEEEEEECSSCCC------------CEEEEEEEEEEETTSCEEEEEEE-EESTTHH--HHHHHHHHHGGGGT
T ss_pred CCeEeEEEEEEEeccCCCccccccccccccCCcCCccEEEEEEEECCCCEEEEEec-CcccchH--HHHHHHHHHHHHHc
Confidence 3999999999999999999999976 6778899999999999999999993 3333322 12223456899999
Q ss_pred CCCCCCHHHHHHHHHHHC--CC--ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecC--C-CHHHHHH
Q 014285 138 QSPPTTLNFALDEIARIL--PG--SEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPA--V-SPAEASE 210 (427)
Q Consensus 138 g~~~~~~~~~~~~l~~~~--~g--~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~--~-~~~~~~~ 210 (427)
|+++.+++.+|+.|.+.. .+ ...+++++||||||||++||..|+|||+||||.++++|+|.+++. . +++++.+
T Consensus 89 G~d~~~~~~i~~~l~~~~~~~~~~~~~~~A~~aid~AlwDl~gk~~g~Pl~~llGg~~~~vp~y~~~g~~~~~~~e~~~~ 168 (393)
T 2og9_A 89 GEDPSDIAKLWDKLCWAGASAGRSGLSTQAIGAFDVALWDLKAKRAGLSLAKLLGSYRDSVRCYNTSGGFLHTPIDQLMV 168 (393)
T ss_dssp TSCTTCHHHHHHHHHHTTGGGCSSSHHHHHHHHHHHHHHHHHHHHTTCBHHHHHCCSCSEEEEEBCTTCCTTSCHHHHHH
T ss_pred CCChhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceEEEEECCCcCCCCHHHHHH
Confidence 999999999999998642 22 235689999999999999999999999999999999999988532 4 8999999
Q ss_pred HHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCC
Q 014285 211 LASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDD 288 (427)
Q Consensus 211 ~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d 288 (427)
.+++++++||+++|+|+|. +++.|++++++||+. ++++.|+||+|++|++++|+++++.|+++++ .|||||++++|
T Consensus 169 ~a~~~~~~Gf~~vKik~g~~~~~~~~e~v~avR~avg~d~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iE~P~~~~~ 246 (393)
T 2og9_A 169 NASASIERGIGGIKLKVGQPDGALDIARVTAVRKHLGDAVPLMVDANQQWDRPTAQRMCRIFEPFNL--VWIEEPLDAYD 246 (393)
T ss_dssp HHHHHHHTTCCCEEEECCCSCHHHHHHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGCC--SCEECCSCTTC
T ss_pred HHHHHHHcCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhhCC--CEEECCCCccc
Confidence 9999999999999999995 789999999999994 8999999999999999999999999999997 49999999999
Q ss_pred hhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhH
Q 014285 289 WSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRL 367 (427)
Q Consensus 289 ~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~i 367 (427)
++++++|++ ++++||++||++.+..+++++++.+++|++++|++++| ++++++++++|+++|+++++|++.+
T Consensus 247 ~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~gi~~~~h~~~~--- 319 (393)
T 2og9_A 247 HEGHAALAL----QFDTPIATGEMLTSAAEHGDLIRHRAADYLMPDAPRVGGITPFLKIASLAEHAGLMLAPHFAME--- 319 (393)
T ss_dssp HHHHHHHHH----HCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHTSHHHHHHHHHHHHHTTCEECCCSCHH---
T ss_pred HHHHHHHHH----hCCCCEEeCCCcCCHHHHHHHHHCCCCCEEeeCccccCCHHHHHHHHHHHHHcCCEEeccCccH---
Confidence 999999986 68999999999999999999999999999999999997 9999999999999999999998754
Q ss_pred HHHHHHHHHhhcCCcceeccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCc
Q 014285 368 ATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTI 425 (427)
Q Consensus 368 g~~a~~hlaaal~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~ 425 (427)
.++|+++++++..+.|+.. + ..+++.+++.++||++.+|++||||+++|+++
T Consensus 320 ---~~~~laaa~~~~~~~e~~~-~--~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~ 371 (393)
T 2og9_A 320 ---LHVHLAAAYPREPWVEHFE-W--LEPLFNERIEIRDGRMLVPTRPGLGLTLSGQV 371 (393)
T ss_dssp ---HHHHHHHTSSSCCEEECCC-T--TGGGBSCCCCEETTEEECCCSSBTCCCBCTHH
T ss_pred ---HHHHHHhhCCCCceeeccc-c--hHHHccCCCeeeCCEEECCCCCCCCeeeCHHH
Confidence 3679999999988887642 2 24567778889999999999999999999874
|
| >4a35_A Mitochondrial enolase superfamily member 1; isomerase; 1.74A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-64 Score=514.98 Aligned_cols=350 Identities=18% Similarity=0.203 Sum_probs=289.4
Q ss_pred eeEEEEEEEEEEeeccccccccce--eEEeeeEEEEEEEEcC--CceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLS--SVENVENVAIRVELSN--GCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSP 140 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~--~~~~~~~vlV~v~t~~--G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~ 140 (427)
|||++|+++.+++|++.|+..+.+ +....+.++|+|+||+ |++||||+.+... +.+ .....++.+.|.|+|++
T Consensus 5 mkI~~i~~~~v~~p~~~~~~~s~~~~~~~~~~~~~V~i~Td~~dG~~G~Ge~~~~g~-~~~--~~~~~i~~l~~~liG~d 81 (441)
T 4a35_A 5 GRISRLSVRDVRFPTSLGGHGADAMHTDPDYSAAYVVIETDAEDGIKGCGITFTLGK-GTE--VVVCAVNALAHHVLNKD 81 (441)
T ss_dssp CBEEEEEEEEEECCGGGTTCCCCSSCSSCCCEEEEEEEEESSCSCCCEEEEEEECST-THH--HHHHHHHHHGGGTTTCB
T ss_pred CEEEEEEEEEEEecCCCCCCCccceeccCcceEEEEEEEECCCCCCEEEEeeeCCCC-ChH--HHHHHHHHHHHHhCCCC
Confidence 899999999999999988776544 3355789999999998 9999999986421 111 12233466899999999
Q ss_pred CCCHHHHHHHHHHHC--------CCC---hhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCC-C----------------
Q 014285 141 PTTLNFALDEIARIL--------PGS---EFASVRAGVEMALIDAVANSIDIPLWRLFGGAS-N---------------- 192 (427)
Q Consensus 141 ~~~~~~~~~~l~~~~--------~g~---~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~-~---------------- 192 (427)
+.+++.+|+.+++.+ .|. ...++++|||+|||||+||.+|+|||+||||.. +
T Consensus 82 ~~~i~~~~~~~~~~l~~~~~~~~~g~~~g~~~~A~saID~ALwDl~gK~~g~Pv~~LLGG~~r~~i~~~~~~~y~~d~~~ 161 (441)
T 4a35_A 82 LKDIVGDFRGFYRQLTSDGQLRWIGPEKGVVHLATAAVLNAVWDLWAKQEGKPVWKLLVDMDPRMLVSCIDFRYITDVLT 161 (441)
T ss_dssp HHHHHTTHHHHHHHHHSCTTGGGGCSSSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHSCHHHHHTTCCCTTTTTTCC
T ss_pred HHHHHHHHHHHHHHHhhccceeecCCCccHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCcccceecccccccccccc
Confidence 999865554444321 121 336799999999999999999999999999973 2
Q ss_pred -------------------------ceeeeeee--c-CCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHH-
Q 014285 193 -------------------------SLSTAITI--P-AVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHA- 243 (427)
Q Consensus 193 -------------------------~ip~~~~i--~-~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~- 243 (427)
.+|.|.+. + ..+++++.+.+++++++||++||+|+|.++++|++++++||+
T Consensus 162 ~~~~~~~~~~~~~~~~~r~~~~~~~~~p~y~~~~g~~~~~~e~~~~~a~~~~~~Gf~~~KlKvG~~~~~d~~~v~avR~a 241 (441)
T 4a35_A 162 EEDALEILQKGQIGKKEREKQMLAQGYPAYTTSCAWLGYSDDTLKQLCAQALKDGWTRFKVKVGADLQDDMRRCQIIRDM 241 (441)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHHCEEEEECTTCCTTCCHHHHHHHHHHHHHTTCCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhcccccchhhhhhcccCcceEEeccccCCCCHHHHHHHHHHHHHCCCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence 26777763 1 248999999999999999999999999999999999999999
Q ss_pred hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHH
Q 014285 244 VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVM 323 (427)
Q Consensus 244 ~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll 323 (427)
.+|++.|+||||++|++++|++++++|+++++ .|||||++++|++++++|++.++ .+++|||+||++.+..++++++
T Consensus 242 ~G~~~~l~vDaN~~~~~~~A~~~~~~L~~~~~--~~iEeP~~~~d~~~~~~l~~~l~-~~~iPIa~gE~~~~~~~~~~~l 318 (441)
T 4a35_A 242 IGPEKTLMMDANQRWDVPEAVEWMSKLAKFKP--LWIEEPTSPDDILGHATISKALV-PLGIGIATGEQCHNRVIFKQLL 318 (441)
T ss_dssp HCTTSEEEEECTTCCCHHHHHHHHHHHGGGCC--SEEECCSCTTCHHHHHHHHHHHG-GGTCEEEECTTCCSHHHHHHHH
T ss_pred hCCCCeEEEECCCCCCHHHHHHHHHhhcccCc--cEEeCCCCcccHHHHHHHHHhcc-CCCCCEEeCCccccHHHHHHHH
Confidence 48999999999999999999999999999987 59999999999999999986211 2789999999999999999999
Q ss_pred HcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHH-HHHHh-------hcCCcceeccCCCcccc
Q 014285 324 QENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFA-LHLAA-------GLGCIKYVNLNTPFLLS 394 (427)
Q Consensus 324 ~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~-~hlaa-------al~~~~~~e~~~p~~~~ 394 (427)
+.+++|++|+|++++| ++++++++++|+++|+++++|+ +++|++++ .|++. +..+..++|+..+ .
T Consensus 319 ~~~a~div~~d~~~~GGit~~~kia~lA~~~gv~v~~H~---~~ig~aa~~~hl~~~~~~~l~~~~~~~~~E~~~~---~ 392 (441)
T 4a35_A 319 QAKALQFLQIDSCRLGSVNENLSVLLMAKKFEIPVCPHA---GGVGLCELVQHLIIFDYISVSASLENRVCEYVDH---L 392 (441)
T ss_dssp HTTCCSEECCCTTTSSHHHHHHHHHHHHHHTTCCBCCCC---CTTTHHHHHHHHHHHHHHHTSCCCTTCCEEECCS---S
T ss_pred HcCCCCEEEECccccCCHHHHHHHHHHHHHcCCEEEEeC---ChHHHHHHHHHHhhhhhcccccCcccceeeccch---h
Confidence 9999999999999998 9999999999999999999996 46777654 35432 2233345554332 2
Q ss_pred cCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 395 EDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 395 ~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
.+++.+++.++||++.+|++||||||+|+++|
T Consensus 393 ~~~~~~p~~~~dG~i~vp~~PGLGveld~~~l 424 (441)
T 4a35_A 393 HEHFKYPVMIQRASYMPPKDPGYSTEMKEESV 424 (441)
T ss_dssp GGGBSSCCEESSSEEECCCSSBCSCCBCHHHH
T ss_pred hhcccCCceeeCCEEECCCCCcCCcccCHHHH
Confidence 45677888999999999999999999999865
|
| >2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-63 Score=506.36 Aligned_cols=342 Identities=18% Similarity=0.225 Sum_probs=302.6
Q ss_pred eeEEEEEEEEEEeeccccccccce------eEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLS------SVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQ 138 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~------~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g 138 (427)
|||++++++.+++|++.||.++.+ +.+.++.++|+|+|++|++||||+. .+.++++ .....++.++|.|+|
T Consensus 26 mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~~~~~v~V~v~td~G~~G~GE~~-~~~~~~~--~~~~~~~~l~p~l~G 102 (398)
T 2pp0_A 26 DRIEWVKLSLAFLPLATPVSDAKVLTGRQKPLTEVAIIIAEIRSRDGFEGVGFSY-SKRAGGQ--GIYAHAKEIADNLLG 102 (398)
T ss_dssp CCEEEEEEEEEEEEEEEEECCHHHHTTSSCCEEEEEEEEEEEEETTSCEEEEEEE-ESSTTHH--HHHHHHHHHGGGGTT
T ss_pred CeEEEEEEEEEeccCCCcccccccccccccccCCCcEEEEEEEECCCCEEEEEec-CccchHH--HHHHHHHHHHHHHcC
Confidence 999999999999999999999865 7888999999999999999999994 3333322 122234568999999
Q ss_pred CCCCCHHHHHHHHHHHC--CCC--hhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecC--C-CHHHHHHH
Q 014285 139 SPPTTLNFALDEIARIL--PGS--EFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPA--V-SPAEASEL 211 (427)
Q Consensus 139 ~~~~~~~~~~~~l~~~~--~g~--~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~--~-~~~~~~~~ 211 (427)
+++.+++.+|+.|.+.. .++ ..+++++||||||||++||..|+|||+||||.++++|+|.+++. . +++++.+.
T Consensus 103 ~d~~~~~~i~~~l~~~~~~~~~~~~~~~A~~aid~AlwDl~ak~~g~Pl~~lLGg~~~~vp~y~~~g~~~~~~~e~~~~~ 182 (398)
T 2pp0_A 103 EDPNDIDKIYTKLLWAGASVGRSGMAVQAISPIDIALWDMKAKRAGLPLAKLLGAHRDSVQCYNTSGGFLHTPLDQVLKN 182 (398)
T ss_dssp SCTTCHHHHHHHHHHHTGGGCSSTHHHHHHHHHHHHHHHHHHHHTTSBHHHHHCCSCSEEEEEECTTSCTTSCHHHHHHH
T ss_pred CCchhHHHHHHHHHHhhcccCCchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeeEEEecCCcCCCCHHHHHHH
Confidence 99999999999997652 222 34689999999999999999999999999999899999988532 4 89999999
Q ss_pred HHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCCh
Q 014285 212 ASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW 289 (427)
Q Consensus 212 ~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~ 289 (427)
+++++++||+.+|+|+|. +++.|++++++||+. ++++.|+||+|++|++++|+++++.|+++++ .|||||++++|+
T Consensus 183 a~~~~~~Gf~~vKik~g~~~~~~d~e~v~avR~avG~d~~l~vDan~~~~~~~ai~~~~~l~~~~i--~~iEqP~~~~d~ 260 (398)
T 2pp0_A 183 VVISRENGIGGIKLKVGQPNCAEDIRRLTAVREALGDEFPLMVDANQQWDRETAIRMGRKMEQFNL--IWIEEPLDAYDI 260 (398)
T ss_dssp HHHHHHTTCSCEEEECCCSCHHHHHHHHHHHHHHHCSSSCEEEECTTCSCHHHHHHHHHHHGGGTC--SCEECCSCTTCH
T ss_pred HHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHcCC--ceeeCCCChhhH
Confidence 999999999999999995 789999999999994 8999999999999999999999999999997 499999999999
Q ss_pred hhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHH
Q 014285 290 SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLA 368 (427)
Q Consensus 290 ~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig 368 (427)
+++++|++ ++++||++||++.+..+++++++.+++|++++|++++| ++++++++++|+++|+++++|++.++
T Consensus 261 ~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGite~~~i~~~A~~~gi~~~~h~~~~~--- 333 (398)
T 2pp0_A 261 EGHAQLAA----ALDTPIATGEMLTSFREHEQLILGNASDFVQPDAPRVGGISPFLKIMDLAAKHGRKLAPHFAMEV--- 333 (398)
T ss_dssp HHHHHHHH----HCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHTSHHHHHHHHHHHHHTTCEECCCSCHHH---
T ss_pred HHHHHHHh----hCCCCEEecCCcCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEeecCccHH---
Confidence 99999986 68999999999999999999999999999999999997 99999999999999999999987543
Q ss_pred HHHHHHHHhhcCCcceeccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCC
Q 014285 369 TGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWT 424 (427)
Q Consensus 369 ~~a~~hlaaal~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~ 424 (427)
++|+++++++..+.|+.. +..+++.+++.++||++.+|++||||+++|++
T Consensus 334 ---~~~laaa~~~~~~~e~~~---~~~~~~~~~~~~~~G~i~~p~~PGlGv~~d~~ 383 (398)
T 2pp0_A 334 ---HLHLSAAYPLEPWLEHFE---WLNPLFNEQLELRDGRMWISDRHGLGFTLSEQ 383 (398)
T ss_dssp ---HHHHHHTCSSCCCEEECS---TTGGGBSCCCEEETTEEECCSSSBTCCCBCHH
T ss_pred ---HHHHHhcCCCcceeeccc---chhhhccCCCeeeCCEEECCCCCCCCcccCHH
Confidence 689999999988877542 22456777889999999999999999999986
|
| >3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-63 Score=506.25 Aligned_cols=334 Identities=16% Similarity=0.177 Sum_probs=284.6
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHH-HHhhHhcCCCCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVR-EACQFLRQSPPTT 143 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~-~~~~~l~g~~~~~ 143 (427)
|||++|+++.++ ..++.++|+|+||+|++||||+.. +.+ .....+. .+.|.|+|++|.+
T Consensus 4 mkIt~v~~~~~~--------------~~~~~~~V~v~td~G~~G~GE~~~----~~~--~~~~~i~~~l~p~liG~dp~~ 63 (410)
T 3dip_A 4 PRITALRTIRLP--------------ERPKLIWVEVETEDGLTGLGETFR----GAQ--AVEAVLHEQTAPAIIGRAAEN 63 (410)
T ss_dssp CBEEEEEEEEET--------------TEEEEEEEEEEETTSCEEEEEEES----CHH--HHHHHHHHTHHHHHTTSBTTC
T ss_pred CeEEEEEEEEEC--------------CCCCEEEEEEEECCCCEEEEeCCC----ChH--HHHHHHHHHHHHHhcCCCcch
Confidence 899999987653 135789999999999999999532 122 2222344 3889999999999
Q ss_pred HHHHHHHHHHHCC----CChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecC----------------
Q 014285 144 LNFALDEIARILP----GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPA---------------- 202 (427)
Q Consensus 144 ~~~~~~~l~~~~~----g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~---------------- 202 (427)
++.+|+.|++... +....++++|||||||||+||.+|+|||+||||. +++||+|.++..
T Consensus 64 ~e~~~~~~~~~~~~~~~~~~~~~A~sAID~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~yas~~~~~g~~~~~~~~~~~~~ 143 (410)
T 3dip_A 64 ITSISSELLNPYVGFGSSSAEVRAASAVDIALWDLAGQRAGVPLHVALGGAARDRVPVYATCAGYDFNTSLGGRRSIGSA 143 (410)
T ss_dssp HHHHHHHHTCCSSSCSSCCHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSEEEEEEEECTTTC-------------
T ss_pred HHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHHhHhHcCCcHHHHhCCCcCCceeEEEeccccccccccccccccccc
Confidence 9999999976421 1234679999999999999999999999999996 799999965421
Q ss_pred -------CCHHH----HHHHHHHHhhcCCcEEEE--------eccC-----CchhhHHHHHHHHHh-CCCcEEEEeCCCC
Q 014285 203 -------VSPAE----ASELASKYCKLGFSTLKL--------NVGR-----NITADFDVLQAIHAV-HPHCSFILDANEG 257 (427)
Q Consensus 203 -------~~~~~----~~~~~~~~~~~Gf~~iKl--------KiG~-----~~~~d~~~l~~ir~~-~~~~~L~vDAN~~ 257 (427)
.++++ ..+.+++++++||++||+ |+|. ++++|++++++||+. ++++.|+||+|++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~K~~~~~~~~~K~G~~~~~~~~~~d~e~v~avR~a~g~d~~l~vDaN~~ 223 (410)
T 3dip_A 144 ELSTGPYDDQVAFMRDAGVLAESLVAEGYAAMKIWPFDDFASITPHHISLTDLKDGLEPFRKIRAAVGQRIEIMCELHSL 223 (410)
T ss_dssp ---------------CHHHHHHHHHHTTCSEEEECTTHHHHTTCTTCCCHHHHHHHHHHHHHHHHHHTTSSEEEEECTTC
T ss_pred ccccccccchhhhhhhHHHHHHHHHHcCCCEEEECCccCccccccCcCCHHHHHHHHHHHHHHHHHcCCCceEEEECCCC
Confidence 12222 245567888999999999 9985 357899999999995 7899999999999
Q ss_pred CCHHHHHHHHHHhhhCCCCCceEeCC-CCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCC
Q 014285 258 YTSEEAVEVLGKLNDMGVIPVLFEQP-VHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLA 336 (427)
Q Consensus 258 ~s~~~A~~~l~~L~~~~l~~~~iEqP-~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~ 336 (427)
|++++|+++++.|+++++ .||||| ++++|++++++|++ ++++||++||++.+..+++++++.+++|++|+|++
T Consensus 224 ~~~~~A~~~~~~L~~~~i--~~iEqP~~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~ 297 (410)
T 3dip_A 224 WGTHAAARICNALADYGV--LWVEDPIAKMDNIPAVADLRR----QTRAPICGGENLAGTRRFHEMLCADAIDFVMLDLT 297 (410)
T ss_dssp BCHHHHHHHHHHGGGGTC--SEEECCBSCTTCHHHHHHHHH----HHCCCEEECTTCCSHHHHHHHHHTTCCSEEEECTT
T ss_pred CCHHHHHHHHHHHHhcCC--CEEECCCCCcccHHHHHHHHh----hCCCCEEecCCcCCHHHHHHHHHcCCCCeEeeccc
Confidence 999999999999999997 499999 89999999999986 68999999999999999999999999999999999
Q ss_pred Ccc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcceecc-C-CCcccccCCCCCceeeeCcEEecCC
Q 014285 337 KFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNL-N-TPFLLSEDPFVGGCEVSGAIYNFTN 413 (427)
Q Consensus 337 ~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~-~-~p~~~~~~~~~~~~~~~~G~i~~p~ 413 (427)
++| ++++++++++|+++|+++++|++ |+|+++|++|++++++|+.+.|+ + ....+.++++.+++.++||++.+|+
T Consensus 298 ~~GGit~~~~ia~~A~~~gi~~~~h~~--s~i~~aa~~hlaaa~pn~~~~e~~~~~~~~~~~~~~~~~~~~~~G~i~~p~ 375 (410)
T 3dip_A 298 WCGGLSEGRKIAALAETHARPLAPHXT--GPVALMAGLHLALHAPTAIFQEVVRASLATWYADLVDHLPVIQEGIALAPT 375 (410)
T ss_dssp TSSCHHHHHHHHHHHHHTTCCEEECSS--CHHHHHHHHHHHHHCTTBCCEEEECTTSCCTHHHHBSCCCCEETTEEECCC
T ss_pred ccCCHHHHHHHHHHHHHcCCEEeeeCc--cHHHHHHHHHHHHhCCCCeEEEeccccCchhHHhhcCCCCcccCCEEECCC
Confidence 997 99999999999999999999998 99999999999999999988874 3 1222345677888899999999999
Q ss_pred CCCcccccCCCcC
Q 014285 414 ARGQGGFLKWTIV 426 (427)
Q Consensus 414 ~pGlGve~d~~~v 426 (427)
+||||+|+|++++
T Consensus 376 ~PGlGve~d~~~l 388 (410)
T 3dip_A 376 RPGLGTALLPHVR 388 (410)
T ss_dssp SSBTSCCBCTTGG
T ss_pred CCCCCcccCHHHH
Confidence 9999999999976
|
| >2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure initiative; 1.60A {Desulfotalea psychrophila LSV54} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-64 Score=505.76 Aligned_cols=340 Identities=18% Similarity=0.231 Sum_probs=293.1
Q ss_pred eEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchH-HHHHHHHHHhhHhcCCCC---
Q 014285 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQT-KALVKVREACQFLRQSPP--- 141 (427)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~-~~~~~~~~~~~~l~g~~~--- 141 (427)
++ +++++++++|++.||.++.++++.++.++|+| |++|++|||||.++++++++.. .....++.+++.|+|+++
T Consensus 4 ~m-~i~~~~~~~pl~~p~~~s~~~~~~~~~v~V~v-td~G~~G~GE~~~~~~~~~e~~~~~~~~l~~~~~~l~g~d~~~~ 81 (377)
T 2pge_A 4 GM-ELSYRRSDLIFKRPAGTSRGVLTSKPTWFVRL-DIDGHGGQGEVSLIPGLSLDPEEQIGRELDLLARRLRAEEPIRL 81 (377)
T ss_dssp CC-EEEEEECCEEBCC-------CCCEECEEEEEE-EETTEEEEEEEECCTTTCSSCHHHHHHHHHHHHHHHHHSCCHHH
T ss_pred ce-EEEEEEEeecccCcceeccEEEeecceEEEEE-EcCCCEEEEEeccCCCCCcCCHHHHHHHHHHHHHHHhCCCccch
Confidence 55 88999999999999999999999999999999 9999999999999887776433 344456678999999977
Q ss_pred ---------CCHHHHHHHHHHH------C---CCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecCC
Q 014285 142 ---------TTLNFALDEIARI------L---PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAV 203 (427)
Q Consensus 142 ---------~~~~~~~~~l~~~------~---~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~ 203 (427)
.+++.+|+.|.+. . .+...+++++|||+||||+.||..|+|||+||||.++++|+|.+++..
T Consensus 82 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~aid~Al~Dl~ak~~g~Pl~~llGg~~~~vp~~~~i~~~ 161 (377)
T 2pge_A 82 RQFLAERGGADFSDYRSVLTDIAGILDSWQVSTDGRFPALRFALEMALLDLLSGGRQEWFASDFTRGEKRIPVNGLIWMG 161 (377)
T ss_dssp HHHHHHTSSCTTSCHHHHHHHHHHHHHHTTSSTTSSCHHHHHHHHHHHHHHHHTSSSCSSCSTTTTTSCCEEBCEEECCC
T ss_pred hhhhhccccccHHHHHHhhhhhhhhhhhcccccccccHHHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCeEEEeEEecCC
Confidence 3445666555331 1 112346899999999999999999999999999988899999999888
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHh-C-CCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceE
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV-H-PHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF 280 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~-~-~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~i 280 (427)
++++|.+++++++++||+++|+|+|. ++++|+++++++|+. + +++.|+||||++|++++|+++++.|+++++ .||
T Consensus 162 ~~e~~~~~a~~~~~~G~~~~K~Kvg~~~~~~d~~~v~avr~~~g~~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i--~~i 239 (377)
T 2pge_A 162 EAAFMQEQIEAKLAEGYGCLKLKIGAIDFDKECALLAGIRESFSPQQLEIRVDANGAFSPANAPQRLKRLSQFHL--HSI 239 (377)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEC---CHHHHHHHHHHHHHHSCTTTCEEEEECTTBBCTTTHHHHHHHHHTTCC--SEE
T ss_pred CHHHHHHHHHHHHHHhhhhheeecCCCChHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC--cEE
Confidence 99999999999999999999999995 889999999999995 7 899999999999999999999999999997 499
Q ss_pred eCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHH--HHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcE
Q 014285 281 EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLND--VQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHL 357 (427)
Q Consensus 281 EqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~--~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~ 357 (427)
|||++++|++++++|++ ++++||++||++.+..+ ++++++.+++|++|+|++++| ++++++++++|+++|+++
T Consensus 240 EqP~~~~d~~~~~~l~~----~~~ipIa~dE~~~~~~~~~~~~~i~~~a~d~i~ik~~~~GGit~~~~i~~~A~~~g~~~ 315 (377)
T 2pge_A 240 EQPIRQHQWSEMAALCA----NSPLAIALDEELIGLGAEQRSAMLDAIRPQYIILKPSLLGGFHYAGQWIELARERGIGF 315 (377)
T ss_dssp ECCBCSSCHHHHHHHHH----HCSSCEEESGGGTTCCTHHHHHHHHHHCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEE
T ss_pred EccCCcccHHHHHHHHh----hCCCcEEECCccCCcchHHHHHHHHhCCCCEEEECchhcCCHHHHHHHHHHHHHCCCeE
Confidence 99999999999999986 68999999999999988 889999999999999999997 999999999999999999
Q ss_pred EEcccCchhHHHHHHHHHHhhcCCcceeccCCCcccccCCCCCceeeeCcEEecCCC
Q 014285 358 MIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNA 414 (427)
Q Consensus 358 ~~~s~~es~ig~~a~~hlaaal~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~ 414 (427)
++|+++||++++++++|+++++++..+.|++++.++.+|++ .++.++||++.+|++
T Consensus 316 ~~~~~~es~i~~~a~~hlaa~~~~~~~~~l~~~~~~~~d~~-~~~~~~~G~~~~~~~ 371 (377)
T 2pge_A 316 WITSALESNLGLAAIAQWTALYQPTMPQGLGTGQLYTNNLP-SNLAVDGGLLGVSEG 371 (377)
T ss_dssp EEBCCSCCHHHHHHHHHHHHTTCCSSCBBCSCCCCBSSCCC-CCCEECSSEEEC---
T ss_pred EecCCcccHHHHHHHHHHHHCCCCCccccCCchhhhHhhcc-CCceeeCCEEecCCc
Confidence 99999999999999999999999987778887766677876 678999999999986
|
| >3tcs_A Racemase, putative; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, TIM barrel; HET: PG4; 1.88A {Roseobacter denitrificans} PDB: 3u4f_A 3t9p_A 3t8q_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-63 Score=502.32 Aligned_cols=333 Identities=22% Similarity=0.332 Sum_probs=281.1
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHH-HHHhhHhcCCCCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKV-REACQFLRQSPPTT 143 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~-~~~~~~l~g~~~~~ 143 (427)
|||++++.+.. ++.++|||+||+|++||||+.+. +.+. ....+ +.+.|.|+|+++.+
T Consensus 23 mkIt~v~~~~~-----------------~~~~~V~v~Td~G~~G~GE~~~~---~~~~--~~~~i~~~l~p~LiG~d~~~ 80 (388)
T 3tcs_A 23 MKLKAIETFTN-----------------DAVGFVRVTTQDGAQGWGQVSTY---HADI--TCTVLHRQVAPWMLGQDITD 80 (388)
T ss_dssp CBEEEEEEEEC-----------------SSCEEEEEEETTSCEEEEECCSS---SHHH--HHHHHHHHTHHHHTTSBCTT
T ss_pred cEEEEEEEEEe-----------------CCeEEEEEEECCCCEEEEeccCC---ccHH--HHHHHHHHHHHHhCCCCccc
Confidence 99999997541 23589999999999999999752 2222 11223 45889999999999
Q ss_pred HHHHHHHHHHHC---CCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecC--CCHHHHHHHHHHH-hh
Q 014285 144 LNFALDEIARIL---PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPA--VSPAEASELASKY-CK 217 (427)
Q Consensus 144 ~~~~~~~l~~~~---~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~--~~~~~~~~~~~~~-~~ 217 (427)
++.+|+.|++.. +|....++++||||||||++||.+|+|||+||||.++++|+|.+... .+++++.+.+++. .+
T Consensus 81 ~e~l~~~~~~~~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGg~~~~v~~y~s~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T 3tcs_A 81 LDDLLDIVTEREHKFPGSYLRRAMAGVDTAIWDLRGKQQGKPVAEVLGGTPGLIRAYASSMKRDITPRDEAERLKRLRDT 160 (388)
T ss_dssp HHHHHHHHHHHTTTCCBHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCCEEEEEEEECCCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHhHcCCcHHHHhCCCCCceEEEEecCcCCCChHHHHHHHHHHHHh
Confidence 999999998642 23334578999999999999999999999999999889999987532 3676665555444 57
Q ss_pred cCCcEEEEeccCC--------chhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCC
Q 014285 218 LGFSTLKLNVGRN--------ITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDD 288 (427)
Q Consensus 218 ~Gf~~iKlKiG~~--------~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d 288 (427)
+||++||+|+|.+ +++|++++++||+ .+|++.|+||+|++|++++|++++++|+++++ .|||||++++|
T Consensus 161 ~Gf~~~K~KvG~~~~~d~~~~~~~~~~~v~avReavG~d~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEeP~~~~d 238 (388)
T 3tcs_A 161 QGFTAFKVRAGAEVGRNRDEWPGRTEEIIPTMRRELGDDVDLLIDANSCYTPDRAIEVGHMLQDHGF--CHFEEPCPYWE 238 (388)
T ss_dssp HCCCEEEEECSCTTCTTCCSSTTHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHHHTTC--CEEECCSCTTC
T ss_pred cCCCEEEEccCCCcccccccchhHHHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCC--eEEECCCCccC
Confidence 8999999999963 3457899999999 58999999999999999999999999999997 49999999999
Q ss_pred hhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhH
Q 014285 289 WSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRL 367 (427)
Q Consensus 289 ~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~i 367 (427)
++++++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. +++
T Consensus 239 ~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~a~kia~~A~~~gv~~~~h~~~-~~~ 313 (388)
T 3tcs_A 239 LAQTKQVTD----ALDIDVTGGEQDCDLPTWQRMIDMRAVDIVQPDILYLGGICRTLRVVEMARAAGLPVTPHCAN-WSL 313 (388)
T ss_dssp HHHHHHHHH----HCSSCEEECTTCCCHHHHHHHHHHTCCSEECCCHHHHTSHHHHHHHHHHHHHTTCCBCCCCCS-TTT
T ss_pred HHHHHHHHH----hcCCCEEcCCccCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEecCCC-cHH
Confidence 999999986 68999999999999999999999999999999999997 999999999999999999999975 567
Q ss_pred HHHHHHHHHhhcCCcc-eeccC--CC--cccccCCC-CCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 368 ATGFALHLAAGLGCIK-YVNLN--TP--FLLSEDPF-VGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 368 g~~a~~hlaaal~~~~-~~e~~--~p--~~~~~~~~-~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+.++++|++++++|.. |+|++ ++ .....+++ .+++.++||++.+|++||||+|+|+++|
T Consensus 314 ~~~a~~hl~aa~pn~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~G~i~vp~~PGLGveld~~~l 378 (388)
T 3tcs_A 314 VTLFTMHLLRAIPNAGKYLEFSIEGPDYYPWQEGLFVKTPYEIEDGHARVTDAPGWGVEISPEWL 378 (388)
T ss_dssp HHHHHHHHHTTCTTBCSCEEEECCCTTTCGGGTTCBSSCSCCCBTTEEEECSSSBTCCCBCHHHH
T ss_pred HHHHHHHHHHhCCCccceeEeecCcccccchhhhhccCCCceeeCCEEECCCCCCCCCeECHHHH
Confidence 8889999999999973 55532 22 12234555 5677899999999999999999999865
|
| >2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-63 Score=505.70 Aligned_cols=346 Identities=15% Similarity=0.245 Sum_probs=297.7
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCCCH
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTL 144 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~~~ 144 (427)
|||++|+++.+++|++.|++. ...++|+|+|++|++||||+++..+.+.+ .....++++.|.|+|+++.++
T Consensus 4 MkI~~i~~~~~~~p~~~p~~~-------~~~v~V~v~td~G~~G~Ge~a~~~g~~~~--~~~~~i~~l~p~liG~d~~~~ 74 (407)
T 2o56_A 4 MKITSVDIIDVANDFASATSK-------WRPVVVKINTDEGISGFGEVGLAYGVGAS--AGIGMAKDLSAIIIGMDPMNN 74 (407)
T ss_dssp CCEEEEEEEECCCCC-----C-------CCCEEEEEEETTSCEEEEEESCSSSSCHH--HHHHHHHHHHHHHTTSCTTCH
T ss_pred CEEEEEEEEEeccccCCCccc-------ceeEEEEEEeCCCCEEEEeeccCCCCchH--HHHHHHHHHHHHhCCCChHHH
Confidence 899999999999999998642 13589999999999999999433222222 233345568999999999999
Q ss_pred HHHHHHHHHHCCC-----ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeee-e--cCC---------CHH
Q 014285 145 NFALDEIARILPG-----SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAIT-I--PAV---------SPA 206 (427)
Q Consensus 145 ~~~~~~l~~~~~g-----~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~-i--~~~---------~~~ 206 (427)
+.+|+.|.+...+ ...+++++||||||||++||..|+|||+||||. ++++|+|.+ + +.. +++
T Consensus 75 ~~i~~~l~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~~vp~y~~~i~~g~~~~~~~~~~~~~~ 154 (407)
T 2o56_A 75 EAIWEKMLKKTFWGQGGGGIFSAAMSGIDIALWDIKGKAWGVPLYKMLGGKSREKIRTYASQLQFGWGDGSDKDMLTEPE 154 (407)
T ss_dssp HHHHHHHHHSSSGGGGCBHHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSSEEEEEECGGGCCSTTCTTCCCCSHH
T ss_pred HHHHHHHHHhccccCCCchHHHhHHHHHHHHHHHHhhhhcCCcHHHHcCCCCCCeeeeeeeeccCCccccccccccCCHH
Confidence 9999999864321 124689999999999999999999999999997 789999976 5 334 899
Q ss_pred HHHHHHHHHhhcCCcEEEEec------cC-------------CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHH
Q 014285 207 EASELASKYCKLGFSTLKLNV------GR-------------NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEV 266 (427)
Q Consensus 207 ~~~~~~~~~~~~Gf~~iKlKi------G~-------------~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~ 266 (427)
++.+.+++++++||+++|+|+ |. +++.|++++++||+ +++++.|+||+|++|++++|+++
T Consensus 155 ~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s~~~~~~~~~~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~ 234 (407)
T 2o56_A 155 QYAQAALTAVSEGYDAIKVDTVAMDRHGNWNQQNLNGPLTDKILRLGYDRMAAIRDAVGPDVDIIAEMHAFTDTTSAIQF 234 (407)
T ss_dssp HHHHHHHHHHHTTCSEEEECCSSBCTTSCBSCSCCCSSCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEcccccCCcCccccCcccCCCchhHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHH
Confidence 999999999999999999997 53 45789999999999 68999999999999999999999
Q ss_pred HHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHH
Q 014285 267 LGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQ 345 (427)
Q Consensus 267 l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~ 345 (427)
++.|+++++ .|||||++++|++++++|++ ++++||++||++.+..+++++++.+++|++++|++++| ++++++
T Consensus 235 ~~~l~~~~i--~~iE~P~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGite~~~ 308 (407)
T 2o56_A 235 GRMIEELGI--FYYEEPVMPLNPAQMKQVAD----KVNIPLAAGERIYWRWGYRPFLENGSLSVIQPDICTCGGITEVKK 308 (407)
T ss_dssp HHHHGGGCC--SCEECSSCSSSHHHHHHHHH----HCCSCEEECTTCCHHHHHHHHHHTTCCSEECCCTTTTTHHHHHHH
T ss_pred HHHHHhcCC--CEEeCCCChhhHHHHHHHHH----hCCCCEEeCCCcCCHHHHHHHHHcCCCCEEecCccccCCHHHHHH
Confidence 999999997 49999999999999999986 68999999999999999999999999999999999998 999999
Q ss_pred HHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcceeccCCC--cccccCCCCCceeeeCcEEecCCCCCcccccCC
Q 014285 346 IIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTP--FLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKW 423 (427)
Q Consensus 346 ~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~~~p--~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~ 423 (427)
++++|+++|+++++|++. |+|+++|++|++++++|+.++|+... ..+..+++.+++.++||++.+|++||||+++|+
T Consensus 309 i~~~A~~~g~~~~~h~~~-s~i~~aa~~hlaaa~~~~~~~e~~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~ 387 (407)
T 2o56_A 309 ICDMAHVYDKTVQIHVCG-GPISTAVALHMETAIPNFVIHELHRYALLEPNTQTCKYNYLPKNGMYEVPELPGIGQELTE 387 (407)
T ss_dssp HHHHHHTTTCEECCCCCS-CHHHHHHHHHHHHHCTTBCCEEEEGGGGSHHHHTTBSCCCCCBTTEECCCCSSBTSCCBCH
T ss_pred HHHHHHHcCCeEeecCCC-CHHHHHHHHHHHHhCCCceeEeeccccccccHHHhccCCceecCCEEECCCCCCCCceeCH
Confidence 999999999999999985 99999999999999999888876421 113467787888899999999999999999999
Q ss_pred CcC
Q 014285 424 TIV 426 (427)
Q Consensus 424 ~~v 426 (427)
+++
T Consensus 388 ~~l 390 (407)
T 2o56_A 388 ETM 390 (407)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
|
| >4g8t_A Glucarate dehydratase; enolase, enzyme function INI EFI, structural genomics, lyase; 1.70A {Actinobacillus succinogenes} PDB: 1ec7_A 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A* 3pwi_A* 1jct_A* 3pwg_A* 1bqg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-63 Score=509.58 Aligned_cols=346 Identities=14% Similarity=0.161 Sum_probs=286.2
Q ss_pred eeEEEEEEEEEEeeccccccccceeEE-eeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVE-NVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTT 143 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~-~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~~ 143 (427)
-+|++++++++... ..|+....|... ...-.+|+|+||+|++|||||.. ++. ....++.+.|.|+|+++.+
T Consensus 26 p~i~~~~v~pva~~-d~~l~~~~g~h~p~f~RtiV~v~Td~Gi~G~GE~~g-----~~~--~~~~le~~~p~liG~dp~~ 97 (464)
T 4g8t_A 26 PIITEMQVIPVAGH-DSMLLNLSGAHSPYFTRNIVILKDNSGNTGVGEVPG-----GEK--IRQTLEDAKPLVIGKTLGE 97 (464)
T ss_dssp CBEEEEEEEEEEEE-CCCBEETTEECCSEEEEEEEEEEETTSCEEEEEEEC-----CHH--HHHHHHHHGGGTTTCBGGG
T ss_pred CEEeEEEEEEecCC-CcccccCCcccCCccceEEEEEEECCCCEEEEeCCC-----cHH--HHHHHHHHHHHHcCCCHHH
Confidence 48999999998753 334555444321 12235899999999999999852 211 2233567899999999999
Q ss_pred HHHHHHHHHHHCCC-------------ChhhhHHHHHHHHHHHHHHhhCCCChhhhhC-CC-CCceeeeeeecC------
Q 014285 144 LNFALDEIARILPG-------------SEFASVRAGVEMALIDAVANSIDIPLWRLFG-GA-SNSLSTAITIPA------ 202 (427)
Q Consensus 144 ~~~~~~~l~~~~~g-------------~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llg-g~-~~~ip~~~~i~~------ 202 (427)
++.+|+.|++.+.+ ....+|++|||+|||||+||.+|+|||+||| |+ +++||+|.+...
T Consensus 98 ie~i~~~l~~~~~~~~~~g~g~~~~~~~~~~~A~sAID~ALWDl~gK~~g~Pv~~LLGgG~~Rd~V~~y~~~~~~~d~~~ 177 (464)
T 4g8t_A 98 YKNVMNTVRQTFNDHDAGGRGLQTFDLRTTIHVVTAIEAAMLDLLGQFLGVTVASLLGDGQQRDAVEMLGYLFFIGDRKK 177 (464)
T ss_dssp HHHHHHHHHHHTTTSCTTTTCSSSSCCCSHHHHHHHHHHHHHHHHHHHHTSBTGGGSTTSCCCSEEEBCEEECCBCCGGG
T ss_pred HHHHHHHHHHHhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCceEEEEEEeeccCcccc
Confidence 99999999875321 1235789999999999999999999999999 55 789999887532
Q ss_pred -----------------------CCHHHHHHHHHHH-hhcCCcEEEEeccC-CchhhHHHHHHHHHhCCCcEEEEeCCCC
Q 014285 203 -----------------------VSPAEASELASKY-CKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEG 257 (427)
Q Consensus 203 -----------------------~~~~~~~~~~~~~-~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~~~~~~L~vDAN~~ 257 (427)
.+++++.+++++. .+.||++||+|+|. +.++|+++++++|+.+|++.||||||++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KlKvG~~~~~~di~~v~avrea~pd~~L~vDaN~~ 257 (464)
T 4g8t_A 178 TTLAYQNQENDPCDWYRVRHEEAMTPESVVRLAEAAYEKYGFNDFKLKGGVLDGFEEAEAVTALAKRFPDARITLDPNGA 257 (464)
T ss_dssp SCSCCCCCTTCSSHHHHHTTSCBCSHHHHHHHHHHHHHHHCCSCEEEECSSSCHHHHHHHHHHHHHHSTTCCEEEECTTC
T ss_pred cchhhhcccccccchhhhcccccCCHHHHHHHHHHHHHHcCCCeEEEeCCCCCHHHHHHHHHHHHhhCCCceEEEECCCc
Confidence 2456665555544 45699999999995 7899999999999988899999999999
Q ss_pred CCHHHHHHHHHHhhhCCCCCceEeCCCCCCChh----hHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEe
Q 014285 258 YTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWS----GLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (427)
Q Consensus 258 ~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~----~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~l 333 (427)
|++++|+++++.|+++ + .|+|||++++|+. .+++|+ +++++|||+||++.+..+++++++.+++|++|+
T Consensus 258 wt~~~Ai~~~~~le~~-l--~wiEeP~~~~d~~~~~e~~a~lr----~~~~iPIa~gE~~~~~~~~~~~i~~~avdi~~~ 330 (464)
T 4g8t_A 258 WSLDEAVKIGKQLKGV-L--AYAEDPCGAEQGYSGREIMAEFR----RATGLPTATNMIATDWRQMGHTISLQSVDIPLA 330 (464)
T ss_dssp BCHHHHHHHHHHTTTT-C--SCEESCBCCBTTBCHHHHHHHHH----HHHCCCEEESSSSCSHHHHHHHHHHTCCSEEBC
T ss_pred cCHHHHHHHHHHhhhc-c--ceeecCcCcccccchHHHHHhhh----ccCCCCccccccccchhhHHHHHHhhCCCEEec
Confidence 9999999999999987 6 4999999998874 455555 479999999999999999999999999999999
Q ss_pred CCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCccee-ccCCC-cccccCCCCCceeeeCcEEe
Q 014285 334 KLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYV-NLNTP-FLLSEDPFVGGCEVSGAIYN 410 (427)
Q Consensus 334 k~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~-e~~~p-~~~~~~~~~~~~~~~~G~i~ 410 (427)
|+ ++| ++++++++++|+++|+++++|++.+++|+++|++|+++++||..+. +...+ ....++++.++++++||++.
T Consensus 331 d~-~~GGit~~~kia~lA~~~gi~v~~h~~~~~~I~laA~~hlaaa~pn~~~~~~~~~~~~~~~~~l~~~p~~i~dG~i~ 409 (464)
T 4g8t_A 331 DP-HFWTMQGSIRVAQMCHEWGLTWGSHSNNHFDISLAMFTHVAAAAPGDITAIDTHWIWQEGNQRLTKEPFQIKGGLVE 409 (464)
T ss_dssp CH-HHHCHHHHHHHHHHHHHHTCCCBCCCCSCCHHHHHHHHHHHTTCCSCCCCBCCCHHHHTTSCCSBSSCCCEETTEEE
T ss_pred cc-cccchHHHHHHHHHHHHcCCEEEEcCCcccHHHHHHHHHHHHhCCCCCccccccccccchhHhhcCCCCeeECCEEE
Confidence 94 676 9999999999999999999999999999999999999999986543 33322 23456778889999999999
Q ss_pred cCCCCCcccccCCCcC
Q 014285 411 FTNARGQGGFLKWTIV 426 (427)
Q Consensus 411 ~p~~pGlGve~d~~~v 426 (427)
+|++||||||+|+|+|
T Consensus 410 vP~~PGLGvelD~d~l 425 (464)
T 4g8t_A 410 VPKKPGLGVELDMDQV 425 (464)
T ss_dssp CCSSSBTCCCBCHHHH
T ss_pred CCCCCCCceEECHHHH
Confidence 9999999999999876
|
| >2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-62 Score=501.12 Aligned_cols=347 Identities=16% Similarity=0.226 Sum_probs=300.0
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCCCH
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTL 144 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~~~ 144 (427)
|||++|+++.+++|++++.... ...++|+|+|++|++||||+++..+.+.+ .....++++.|.|+|+++.++
T Consensus 3 MkI~~i~~~~~~~pl~~~~~~~------~~~v~V~v~td~G~~G~Ge~~~~~g~~~~--~~~~~i~~l~p~liG~d~~~~ 74 (410)
T 2gl5_A 3 LKITSIEVFDCELKKRDQTMSS------YNPVLIRVNTDSGLSGIGEVGLAYGAGAK--AGVGIIRDLAPLIVGEDPLNI 74 (410)
T ss_dssp CCEEEEEEEECCGGGTCGGGTT------CCCEEEEEEETTSCEEEEEESCSSSTTHH--HHHHHHHHHGGGTTTSCTTCH
T ss_pred ceEEEEEEEEecccccccCccc------ccceEEEEEeCCCCEEEEeecCcCCCChH--HHHHHHHHHHHHhCCCChHHH
Confidence 8999999999999987643110 12479999999999999999432222122 223345568999999999999
Q ss_pred HHHHHHHHHHCC----C-ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeee-ec--CC-------CHHHH
Q 014285 145 NFALDEIARILP----G-SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAIT-IP--AV-------SPAEA 208 (427)
Q Consensus 145 ~~~~~~l~~~~~----g-~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~-i~--~~-------~~~~~ 208 (427)
+.+|+.|.+... + ...+++++||||||||++||..|+|||+||||. ++++|+|.+ ++ .. +++++
T Consensus 75 ~~i~~~l~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~~vp~y~~~i~~g~~~~~~~~~~~~~~ 154 (410)
T 2gl5_A 75 EKIWEFFFRKTFWGMGGGNVFYAGMSAIDIALWDIKGKYLGVPVYQLLGGKTNEKLRTYASQLQFGWGDKNHILVTPEEY 154 (410)
T ss_dssp HHHHHHHHHSSSGGGSCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTSCSCSSEEEEEECGGGCCTTCCSCCCSHHHH
T ss_pred HHHHHHHHHhcccccCCchHHHhHHHHHHHHHHHHhhhhcCCcHHHHcCCCccCceeEeEecccCCccccccccCCHHHH
Confidence 999999986432 1 124689999999999999999999999999996 688999987 65 34 89999
Q ss_pred HHHHHHHhhcCCcEEEEec------cC------------------CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHH
Q 014285 209 SELASKYCKLGFSTLKLNV------GR------------------NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEA 263 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKi------G~------------------~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A 263 (427)
.+.+++++++||+++|+|+ |. +++.|++++++||+ +++++.|+||+|++|++++|
T Consensus 155 ~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~~~~~~~~~GG~~~~~~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~~~a 234 (410)
T 2gl5_A 155 AEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMGEARIAAMREAMGDDADIIVEIHSLLGTNSA 234 (410)
T ss_dssp HHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCCGGGGSCCCHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHH
T ss_pred HHHHHHHHHcCCCEEEEeccccCCcccccccccccccccCccchhHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHH
Confidence 9999999999999999997 53 35779999999999 68999999999999999999
Q ss_pred HHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHH
Q 014285 264 VEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLG 342 (427)
Q Consensus 264 ~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~ 342 (427)
+++++.|+++++ .|||||++++|++++++|++ ++++||++||++.+..+++++++.+++|++++|++++| +++
T Consensus 235 i~~~~~l~~~~i--~~iE~P~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~ 308 (410)
T 2gl5_A 235 IQFAKAIEKYRI--FLYEEPIHPLNSDNMQKVSR----STTIPIATGERSYTRWGYRELLEKQSIAVAQPDLCLCGGITE 308 (410)
T ss_dssp HHHHHHHGGGCE--EEEECSSCSSCHHHHHHHHH----HCSSCEEECTTCCTTHHHHHHHHTTCCSEECCCTTTTTHHHH
T ss_pred HHHHHHHHhcCC--CeEECCCChhhHHHHHHHHh----hCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHHH
Confidence 999999999987 59999999999999999986 68999999999999999999999999999999999998 999
Q ss_pred HHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcceeccCCC--cccccCCCCCceeeeCcEEecCCCCCcccc
Q 014285 343 TLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTP--FLLSEDPFVGGCEVSGAIYNFTNARGQGGF 420 (427)
Q Consensus 343 ~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~~~p--~~~~~~~~~~~~~~~~G~i~~p~~pGlGve 420 (427)
+++++++|+++|+++++|++ +|+|+++|++|++++++|+.++|+... ..+..+++.+++.++||++.+|++||||+|
T Consensus 309 ~~~ia~~A~~~gi~~~~h~~-~s~i~~aa~~hlaaa~~~~~~~e~~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~ 387 (410)
T 2gl5_A 309 GKKICDYANIYDTTVQVHVC-GGPVSTVAALHMETAIPNFIIHEHHTNAMKASIRELCTHDYQPENGYYVAPEQPGLGQE 387 (410)
T ss_dssp HHHHHHHHHTTTCEECCCCC-SSHHHHHHHHHHHHHCTTBCCEEEETTTTCHHHHTTBSSCCCCBTTEECCCCSSBTSCC
T ss_pred HHHHHHHHHHcCCeEeecCC-CCHHHHHHHHHHHHhCCcceeeeeccccccchHHHhccCCceecCCEEECCCCCcCCcc
Confidence 99999999999999999998 599999999999999999888876421 113467787888999999999999999999
Q ss_pred cCCCcC
Q 014285 421 LKWTIV 426 (427)
Q Consensus 421 ~d~~~v 426 (427)
+|++++
T Consensus 388 ~d~~~l 393 (410)
T 2gl5_A 388 LNDEVV 393 (410)
T ss_dssp BCHHHH
T ss_pred cCHHHH
Confidence 999865
|
| >2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-62 Score=497.43 Aligned_cols=340 Identities=16% Similarity=0.229 Sum_probs=296.8
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhh-HhcCCCCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQ-FLRQSPPTT 143 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~-~l~g~~~~~ 143 (427)
|||++|+++.+. |. ++ ..++|+|+|++|++||||+.+. |+.........++.+.| .|+|+++.+
T Consensus 3 mkI~~i~~~~v~-~~--~~----------~~v~V~v~td~G~~G~GE~~~~--~g~~~~~~~~~i~~l~~~~l~G~d~~~ 67 (392)
T 2poz_A 3 LKITGVNIYLLK-SG--RL----------HPVLVEISTDEGITGAGEAGIA--YGVGGTAAAGMIKDLSERFLIGKDPSR 67 (392)
T ss_dssp CCEEEEEEEECC-BT--TB----------CCEEEEEEETTSCCEEEEESCS--SSSCHHHHHHHHHHHHHHHTTTCCTTC
T ss_pred CeEEEEEEEEEe-cC--Cc----------cEEEEEEEECCCCEEEEeecCC--cCCchHHHHHHHHHhhHhhhcCCChhH
Confidence 899999999887 43 22 2689999999999999999754 22222233344567889 999999999
Q ss_pred HHHHHHHHHHHCCC-----ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeee---ecCCCHHHHHHHHHH
Q 014285 144 LNFALDEIARILPG-----SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAIT---IPAVSPAEASELASK 214 (427)
Q Consensus 144 ~~~~~~~l~~~~~g-----~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~---i~~~~~~~~~~~~~~ 214 (427)
++.+|+.|.+...+ ...+++++||||||||++||..|+|||+||||. ++++|+|.+ .+..+++++.+.+++
T Consensus 68 ~~~i~~~l~~~~~~~~~~~~~~~~A~~aid~AlwDl~gk~~g~Pl~~lLGg~~~~~v~~y~~g~~~~~~~~~~~~~~a~~ 147 (392)
T 2poz_A 68 IEELWSTMYDHSFWAKNGGAIIFAGISAIEQALWDIKGKCLGVPVYELFGGKIRDRVRAYANGWYGAADTPDEFARAVER 147 (392)
T ss_dssp HHHHHHHHHHHSSTTTTCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSEEEEEECSCCTTCCSHHHHHHHTHH
T ss_pred HHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHhhhhcCCcHHHHcCCCccCceEEEEeccccCCCCHHHHHHHHHH
Confidence 99999999875322 124689999999999999999999999999997 679999875 224689999999999
Q ss_pred HhhcCCcEEEEecc------------------CCchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCC
Q 014285 215 YCKLGFSTLKLNVG------------------RNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGV 275 (427)
Q Consensus 215 ~~~~Gf~~iKlKiG------------------~~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l 275 (427)
++++||+.+|+|+| .+++.|++++++||+ +++++.|+||+|++|++++|+++++.|+++++
T Consensus 148 ~~~~Gf~~vKik~g~~~~g~~~~~~~~gg~~~~~~~~~~e~v~avr~a~G~d~~l~vD~n~~~~~~~a~~~~~~l~~~~i 227 (392)
T 2poz_A 148 PLKEGYGALKFYPLAQRVGSALQHVTRRSMSAEAIELAYRRVKAVRDAAGPEIELMVDLSGGLTTDETIRFCRKIGELDI 227 (392)
T ss_dssp HHHTTCSEEEECCCCEEETTEEECCBTTBCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCE
T ss_pred HHHcCCCEEEEecccccccccccccccCCcchhhHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCC
Confidence 99999999999998 235789999999999 68999999999999999999999999999987
Q ss_pred CCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcC
Q 014285 276 IPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSG 354 (427)
Q Consensus 276 ~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~g 354 (427)
.|||||++++|++++++|++ ++++||++||++.+..+++++++.+++|++++|++++| ++++++++++|+++|
T Consensus 228 --~~iE~P~~~~~~~~~~~l~~----~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g 301 (392)
T 2poz_A 228 --CFVEEPCDPFDNGALKVISE----QIPLPIAVGERVYTRFGFRKIFELQACGIIQPDIGTAGGLMETKKICAMAEAYN 301 (392)
T ss_dssp --EEEECCSCTTCHHHHHHHHH----HCSSCEEECTTCCHHHHHHHHHTTTCCSEECCCTTTSSCHHHHHHHHHHHHTTT
T ss_pred --CEEECCCCcccHHHHHHHHh----hCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcC
Confidence 59999999999999999986 68999999999999999999999999999999999997 999999999999999
Q ss_pred CcEEEcccCchhHHHHHHHHHHhhcCCcceeccCC--Cc-ccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 355 LHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNT--PF-LLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 355 i~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~~~--p~-~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+++++|++. |+|++++++|++++++|+.+.|+.. .+ ...++++.+++.++||++.+|++||||+++|++++
T Consensus 302 ~~~~~h~~~-s~i~~aa~~hlaaa~~~~~~~e~~~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 375 (392)
T 2poz_A 302 MRVAPHVCG-SSLIETATLQLEANITNFMIHEHYPAFKADDGYVEVLENPPSISSGYFEMPNGPGLGAVLIKRNI 375 (392)
T ss_dssp CEECCCCCS-SHHHHHHHHHHHHHCTTBCCEEECGGGGGSTTCCCCBSSCCCEETTEEECCCSSBTSCCBCHHHH
T ss_pred CeEecCCCC-CHHHHHHHHHHHHhCCCceEEeeccccccCchHHHhccCCCeecCCEEECCCCCCCCceeCHHHH
Confidence 999999987 9999999999999999988877652 11 23467787888999999999999999999999865
|
| >3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-63 Score=505.36 Aligned_cols=330 Identities=17% Similarity=0.167 Sum_probs=296.6
Q ss_pred eeeEEEEEEEEEEeeccccccccc-eeEEe--eeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCC
Q 014285 64 WVDVQRAEGRELNVALSAPLSLGL-SSVEN--VENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSP 140 (427)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~a~-~~~~~--~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~ 140 (427)
.|||++++++.+++|++.||.++. +.++. ++.++|+|+|+ |.+|||||. + .++.++|.|+|++
T Consensus 11 ~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~~~~V~v~td-G~~G~GE~~---g----------~i~~l~p~l~G~d 76 (392)
T 3p3b_A 11 DWKVEKIEFAKLTGERARSAGANGRIGVHGKSCTVDIARITID-GQTGYGSSI---H----------MTPEWAEDVIGRR 76 (392)
T ss_dssp TCBEEEEEEEEEEEEEEEEECBCSSSCCCEEEEEEEEEEEEET-TEEEEEECC---S----------CCHHHHHTTTTCB
T ss_pred CCeEEEEEEEEEeccCCCcccccccccccCCCCcEEEEEEEEC-CCEEEEecc---c----------HHHHHHHHhcCCC
Confidence 499999999999999999999985 54666 88999999999 999999996 1 1235789999999
Q ss_pred CCCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCC----C--CCceeeeee---ecCCCH------
Q 014285 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG----A--SNSLSTAIT---IPAVSP------ 205 (427)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg----~--~~~ip~~~~---i~~~~~------ 205 (427)
+.+++.+| . ...+++++|||+||||++||..|+|||+|||| . ++++|+|.+ ++..++
T Consensus 77 ~~~~~~~~-------~-~~~~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~~~~~~~vp~~~s~~~~~~~~~~~~~~~ 148 (392)
T 3p3b_A 77 LLDLFDDR-------G-RLREAYRLQLEYPVLDWLGQRQGKPVYDLVSGAHLETGASLVVPCYDTSLYFDDLHLADERAA 148 (392)
T ss_dssp GGGGBCTT-------S-CBCGGGHHHHHHHHHHHHHHHHTCBHHHHHC--------CEEEEEEEEEECBTTTTCCSHHHH
T ss_pred HHHHHHHH-------h-HHHHHHHHHHHHHHHHHHHHHcCCcHHHHhcCccccccccCCcceeEeecccCCCCcccccch
Confidence 88877665 2 22467899999999999999999999999999 5 678999964 445678
Q ss_pred -HHHHHHHHHHhhcCCcEEEEeccC---------CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCC
Q 014285 206 -AEASELASKYCKLGFSTLKLNVGR---------NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMG 274 (427)
Q Consensus 206 -~~~~~~~~~~~~~Gf~~iKlKiG~---------~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~ 274 (427)
+++.+.+++++++||+++|+|+|. +++.|++++++||+ .++++.|+||+|++|++++|+++++.|++++
T Consensus 149 ~e~~~~~a~~~~~~Gf~~vKik~g~~~~~~~~~~~~~~~~e~v~avR~~~g~d~~l~vDan~~~~~~~ai~~~~~l~~~~ 228 (392)
T 3p3b_A 149 VALMQEEAMQGYAKGQRHFKIKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSDVN 228 (392)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEECCHHHHTSCHHHHHHHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHhCCCEEEECcCcCcccCCccccHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcC
Confidence 889999999999999999999996 57889999999999 6899999999999999999999999999998
Q ss_pred CCCceEeCCCCCCChhhHHHHHHhhccc-----cCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCccHHHHHHHHHH
Q 014285 275 VIPVLFEQPVHRDDWSGLHDVSNFARDT-----YGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKA 349 (427)
Q Consensus 275 l~~~~iEqP~~~~d~~~~~~L~~~~r~~-----~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~Gi~~~~~~~~~ 349 (427)
+ .|||||++ +|++++++|++ + +++||++|| +.+..+++++++.+++|++++|++++|++++++++++
T Consensus 229 i--~~iE~P~~-~d~~~~~~l~~----~l~~~g~~iPIa~dE-~~~~~~~~~~i~~~~~d~v~ik~~~~Git~~~~i~~~ 300 (392)
T 3p3b_A 229 L--YWLEEAFH-EDEALYEDLKE----WLGQRGQNVLIADGE-GLASPHLIEWATRGRVDVLQYDIIWPGFTHWMELGEK 300 (392)
T ss_dssp E--EEEECSSS-CCHHHHHHHHH----HHHHHTCCCEEEECC-SSCCTTHHHHHHTTSCCEECCBTTTBCHHHHHHHHHH
T ss_pred C--CEEecCCc-ccHHHHHHHHH----hhccCCCCccEEecC-CCCHHHHHHHHHcCCCCEEEeCccccCHHHHHHHHHH
Confidence 7 59999999 99999999986 5 789999999 9999999999999999999999999999999999999
Q ss_pred HHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcceeccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 350 TRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 350 A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
|+++|+++++| +.||+++++|++|++++++|+.+.|++.+ +..+++.+++.++||++.+|++||||+++|++++
T Consensus 301 A~~~gi~~~~h-~~es~i~~~a~l~laa~~~~~~~~e~~~~--~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 374 (392)
T 3p3b_A 301 LDAHGLRSAPH-CYGNAYGIYASGHLSAAVRNFEFVEYDDI--TIEGMDVSGYRIENGEIHVPATPGFGIVFDDELV 374 (392)
T ss_dssp HHHTTCEECCB-CCSCTHHHHHHHHHGGGCTTBCCEEECCE--EETTEECTTCEEETTEEEECCSSBTSCEECHHHH
T ss_pred HHHcCCEEEec-CCCCHHHHHHHHHHHHhCCCCceeeccch--hhHhhccCCCcccCCEEECCCCCccceeECHHHH
Confidence 99999999999 88999999999999999999888888876 4677887889999999999999999999999865
|
| >2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-62 Score=497.72 Aligned_cols=343 Identities=15% Similarity=0.194 Sum_probs=297.2
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCCCH
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTL 144 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~~~ 144 (427)
|||++|+++.+.+|..+|+ ..++|+|+|++|++||||+++..+.+.+ .....++++.|.|+|+++.++
T Consensus 3 MkI~~i~~~~~~~~~~~~~----------~~v~V~v~td~G~~G~Ge~~~~~g~~~~--~~~~~i~~l~p~l~G~d~~~~ 70 (403)
T 2ox4_A 3 LKITKIEIFHVHTRPQSGQ----------RPILVKVSTDEGIYGLGEAGIAYGVGGS--AAAGILKDYAALLIGEDPFNT 70 (403)
T ss_dssp CCEEEEEEEEECCCTTTCC----------CCEEEEEEETTSCEEEEEESCSSSSCHH--HHHHHHHHHHHHHTTCCTTCH
T ss_pred CeEEEEEEEEecCCCCCCc----------cceEEEEEeCCCCEEEEeecCCCCCchH--HHHHHHHHHHHHcCCCCHHHH
Confidence 8999999999987533332 2589999999999999999432222222 233345568999999999999
Q ss_pred HHHHHHHHHHCCC-----ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeee-ec--CC-------CHHHH
Q 014285 145 NFALDEIARILPG-----SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAIT-IP--AV-------SPAEA 208 (427)
Q Consensus 145 ~~~~~~l~~~~~g-----~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~-i~--~~-------~~~~~ 208 (427)
+.+|+.|.+...+ ...+++++||||||||++||..|+|||+||||. ++++|+|.+ ++ .. +++++
T Consensus 71 ~~i~~~l~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~~vp~y~~~i~~g~~~~~~~~~~~e~~ 150 (403)
T 2ox4_A 71 EAIWEKLFKKTFWGQGGGTVIFSGISAFDIAFWDIKGKALNLPVYKLLGGKNREDLRVYASQLQFGWGKERKSKGRKEEY 150 (403)
T ss_dssp HHHHHHHHHSSSGGGTCBHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSSSSEEEEEECGGGCSSSSCCCCCSHHHH
T ss_pred HHHHHHHHHhcccccCCcHHHHhHHHHHHHHHHHHhHhHcCCcHHHHcCCCCCCceeeeEeeccCCccccccccCCHHHH
Confidence 9999999864321 124689999999999999999999999999997 678999987 54 24 89999
Q ss_pred HHHHHHHhhcCCcEEEEec------cC-------------CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHH
Q 014285 209 SELASKYCKLGFSTLKLNV------GR-------------NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLG 268 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKi------G~-------------~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~ 268 (427)
.+.+++++++||+++|+|+ |. +++.|++++++||+ +++++.|++|+|++|++++|+++++
T Consensus 151 ~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s~~~g~~~~~~~~~~~e~v~avr~avG~d~~l~vDan~~~~~~~ai~~~~ 230 (403)
T 2ox4_A 151 AEEALKAVAEGYDAVKVDVLAHDRNGSREGVFLEGPLPSETIKIGVERVEAIRNAVGPDVDIIVENHGHTDLVSAIQFAK 230 (403)
T ss_dssp HHHHHHHHHTTCSEEEECCSSSCTTSCCTTCCCSSSCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeccccCCccccccCcccCCCchHHHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999997 53 45779999999999 6899999999999999999999999
Q ss_pred HhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHH
Q 014285 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQII 347 (427)
Q Consensus 269 ~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~ 347 (427)
.|+++++ .|||||++++|++++++|++ ++++||++||++.+..+++++++.+++|++++|++++| ++++++++
T Consensus 231 ~l~~~~i--~~iE~P~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGite~~~i~ 304 (403)
T 2ox4_A 231 AIEEFNI--FFYEEINTPLNPRLLKEAKK----KIDIPLASGERIYSRWGFLPFLEDRSIDVIQPDLGTCGGFTEFKKIA 304 (403)
T ss_dssp HHGGGCE--EEEECCSCTTSTHHHHHHHH----TCCSCEEECTTCCHHHHHHHHHHTTCCSEECCCHHHHTHHHHHHHHH
T ss_pred HHHhhCC--CEEeCCCChhhHHHHHHHHH----hCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHH
Confidence 9999987 59999999999999999986 68999999999999999999999999999999999998 99999999
Q ss_pred HHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcceeccCCC--cccccCCCCCceeeeCcEEecCCCCCcccccCCCc
Q 014285 348 KATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTP--FLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTI 425 (427)
Q Consensus 348 ~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~~~p--~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~ 425 (427)
++|+++|+++++|++. |+|++++++|++++++|+.++|+... ..+..+++.+++.++||++.+|++||||+|+|+++
T Consensus 305 ~~A~~~g~~~~~h~~~-s~i~~aa~~hlaaa~~~~~~~e~~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~ 383 (403)
T 2ox4_A 305 DMAHIFEVTVQAHVAG-TGVAEAASLHAEIAIPNFCIHEHHQKTLLPEYEELCVHNYQPVKGRYKVPELPGIGQDITEKL 383 (403)
T ss_dssp HHHHHTTCEECCCCCS-CHHHHHHHHHHHHTCSSBCCEEEEGGGGSHHHHTTBSCCCCCBTTEECCCCSSBTSCCBCGGG
T ss_pred HHHHHcCCEEeecCCC-CHHHHHHHHHHHHhCCCcceeeeccccccchHHHhccCCceecCCEEECCCCCCCCcccCHHH
Confidence 9999999999999985 99999999999999999888876321 11346778788889999999999999999999998
Q ss_pred C
Q 014285 426 V 426 (427)
Q Consensus 426 v 426 (427)
+
T Consensus 384 l 384 (403)
T 2ox4_A 384 Y 384 (403)
T ss_dssp G
T ss_pred H
Confidence 6
|
| >2okt_A OSB synthetase, O-succinylbenzoic acid synthetase; enolase, structural genom protein structure initiative, PSI, nysgrc; 1.30A {Staphylococcus aureus subsp} PDB: 2ola_A 3h70_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-62 Score=490.87 Aligned_cols=322 Identities=15% Similarity=0.125 Sum_probs=285.8
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCC--CCcchHH-HHHHHHHHhhHhcCCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPL--VTGDQTK-ALVKVREACQFLRQSPP 141 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~--~s~~~~~-~~~~~~~~~~~l~g~~~ 141 (427)
|||++++++.+++|++.||.++.++++.++.++|+|+|++|++||||+.+.+. |+++..+ ....++++.|.|+|+++
T Consensus 2 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~e~~~~~~~~l~~~~~~l~G~d~ 81 (342)
T 2okt_A 2 LKLTALHFYKYSEPFKSQIVTPKVTLTHRDCLFIELIDDKGNAYFGECNAFQTDWYDHETIASVKHVIEQWFEDNRNKSF 81 (342)
T ss_dssp BCEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTCCEEEEECCCBSSTTSCSCBHHHHHHHHHHHHHHHTTCCB
T ss_pred cEEEEEEEEEEeecccCCeecccEEEEeeeEEEEEEEECCCCEEEEEecCCCCCcCCCCCHHHHHHHHHHHHHHHcCCCc
Confidence 89999999999999999999999999999999999999999999999998753 6664433 33445655599999999
Q ss_pred CCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeee-cCCCHHHHHHHHHHHhhcCC
Q 014285 142 TTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITI-PAVSPAEASELASKYCKLGF 220 (427)
Q Consensus 142 ~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i-~~~~~~~~~~~~~~~~~~Gf 220 (427)
.+++.+|+.|.+. .| .+++++|||+||||++||..|+ ++|+|+++ +..+ +++ ++++++||
T Consensus 82 ~~~~~l~~~l~~~-~g--~~~a~said~ALwDl~gk~~g~-----------~v~~~~~~~g~~~-e~~----~~~~~~G~ 142 (342)
T 2okt_A 82 ETYEAALKLVDSL-EN--TPAARATIVMALYQMFHVLPSF-----------SVAYGATASGLSN-KQL----ESLKATKP 142 (342)
T ss_dssp CSHHHHHHTTGGG-TT--CHHHHHHHHHHHHHTTCCCCCE-----------EEECEEEESSCCH-HHH----HHHHHHCC
T ss_pred CCHHHHHHHHHHh-hc--ChHHHHHHHHHHHHHhhhhhCc-----------eEeeeEEEecCCH-HHH----HHHHHcCC
Confidence 9999999988654 34 4689999999999999999987 79999988 7655 555 56678899
Q ss_pred cEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhc
Q 014285 221 STLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFAR 300 (427)
Q Consensus 221 ~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r 300 (427)
++||+|+| ++ |++++++||+..|+++||||||++|++++| +++++|+++++ .|||||++++|++++++ .
T Consensus 143 ~~~KiKvg--~~-d~~~v~avr~~~~~~~l~vDaN~~~~~~~A-~~~~~l~~~~i--~~iEqP~~~~d~~~~~~-~---- 211 (342)
T 2okt_A 143 TRIKLKWT--PQ-IMHQIRVLRELDFHFQLVIDANESLDRQDF-TQLQLLAREQV--LYIEEPFKDISMLDEVA-D---- 211 (342)
T ss_dssp SEEEEECC--TT-HHHHHHHHTTSSSCCEEEEECTTCCCGGGH-HHHHHHGGGCE--EEEECCCSSGGGGGGSC-T----
T ss_pred cEEEEEeC--HH-HHHHHHHHHHhCCCCeEEEECCCCCCHHHH-HHHHHHhhCCC--cEEECCCCCccHHHHHH-h----
Confidence 99999999 68 999999999955999999999999999999 99999999987 59999999999999987 3
Q ss_pred cccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhc
Q 014285 301 DTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGL 379 (427)
Q Consensus 301 ~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal 379 (427)
++++|||+||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++||++||+|+++|++|+++++
T Consensus 212 -~~~ipIa~dEs~~~~~~~~~~i~~~a~d~i~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i~~aa~~hlaa~~ 290 (342)
T 2okt_A 212 -GTIPPIALDEKATSLLDIINLIELYNVKVVVLKPFRLGGIDKVQTAIDTLKSHGAKVVIGGMYEYGLSRYFTAMLARKG 290 (342)
T ss_dssp -TSSCCEEESTTCCCHHHHHHHHHHSCCCEEEECHHHHTSGGGHHHHHHHHHHTTCEEEEBCSSCCHHHHHHHHHHHTTS
T ss_pred -cCCCCEEecCCCCCHHHHHHHHHhCCCCEEEEChhhcCCHHHHHHHHHHHHHCCCEEEEcCCcccHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999997 9999999999999999999999999999999999999987
Q ss_pred --CCcceecc-CCCcccccCCCCCceeeeCcEEecCCCCCcccccC
Q 014285 380 --GCIKYVNL-NTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLK 422 (427)
Q Consensus 380 --~~~~~~e~-~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d 422 (427)
++ ++ +++..+.++++.+++.++||++.+ +.||+|+++.
T Consensus 291 ~~~~----~l~~~~~~~~~d~~~~~~~~~~G~~~~-~~PGlg~~~~ 331 (342)
T 2okt_A 291 DYPG----DVTPAGYYFEQDVVAHSGILKEGRLEF-RPPLVDITQL 331 (342)
T ss_dssp SSCC----BCCCTTSSCSSCSSTTTTEEETTEEEE-CCCCCCGGGC
T ss_pred cccc----ccCCchhhhhccccCCCceEECCEEEe-CcccCCHHHc
Confidence 33 23 555556788888889999999999 8899999985
|
| >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-61 Score=492.20 Aligned_cols=339 Identities=19% Similarity=0.262 Sum_probs=292.8
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCc-chHHHHHHHHH-HhhHhcCCCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTG-DQTKALVKVRE-ACQFLRQSPPT 142 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~-~~~~~~~~~~~-~~~~l~g~~~~ 142 (427)
|||++++++.+++|++.||+++.++++.++.++|+|+|++|++||||+.+... +. ........+++ +.|.|+|+++.
T Consensus 3 mkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~v~V~v~td~G~~G~GE~~~~g~-~~~~~~~~~~~i~~~l~p~l~G~d~~ 81 (389)
T 2oz8_A 3 LSLSHFRITRFQFARDRVIGDSQVRADDVNVAALELVSESGEVGLGFIQTLFN-PLPDQQEIESVFEHEVWPSLKGNRAI 81 (389)
T ss_dssp CCEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEEEESSS-CCCCHHHHHHHHHHHTHHHHTTSCHH
T ss_pred CEEEEEEEEEEEeccCCceecccceecccceEEEEEEECCCCEEEEEeccCCC-ccccHHHHHHHHHHHHHHHHcCCCHH
Confidence 89999999999999999999999999999999999999999999999987321 10 01123344555 78999998775
Q ss_pred CHHHHHHHHHHHCCCC---hhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecCC--CHHHHHHHHHHHhh
Q 014285 143 TLNFALDEIARILPGS---EFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAV--SPAEASELASKYCK 217 (427)
Q Consensus 143 ~~~~~~~~l~~~~~g~---~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~--~~~~~~~~~~~~~~ 217 (427)
++ +..+.....+. ..+++++||||||||++||..|+|||+||||.++++|+|.+++.. +++++.+.++++++
T Consensus 82 ~~---~~~~~~~~~~~~~~l~~~a~~aid~AlwDl~~k~~g~Pl~~lLGg~~~~vp~y~~~~~~~~~~~~~~~~a~~~~~ 158 (389)
T 2oz8_A 82 AL---VHRVNRPRGGNQRAYSLPFHEAVQVALWDLAAKEAGLPLHVLLGSRRNRVKAYASGLDFHLDDDAFVSLFSHAAS 158 (389)
T ss_dssp HH---TTCCCCCC------CCSCCHHHHHHHHHHHHHHHHTSBHHHHTTCSCSEEEEEEECCBTTCCHHHHHHHHHHHHH
T ss_pred HH---HHHHhccCCCccchhhHHHHHHHHHHHHHHHHHHhCCcHHHHcCCCCCceEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 44 21110000111 035789999999999999999999999999999999999887653 89999999999999
Q ss_pred cCCcEEEEeccC-CchhhHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHhhh--CCCCCceEeCCCCCCChhhHH
Q 014285 218 LGFSTLKLNVGR-NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLND--MGVIPVLFEQPVHRDDWSGLH 293 (427)
Q Consensus 218 ~Gf~~iKlKiG~-~~~~d~~~l~~ir~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~--~~l~~~~iEqP~~~~d~~~~~ 293 (427)
+||+++|+|+|. +++.|++++++||+. ++++.|+||+|++|++++|+++++.|++ +++ .|||||++++|+++++
T Consensus 159 ~Gf~~vKik~g~~~~~~~~e~v~avR~a~G~~~~l~vDan~~~~~~~a~~~~~~l~~~g~~i--~~iEqP~~~~~~~~~~ 236 (389)
T 2oz8_A 159 IGYSAFKIKVGHRDFDRDLRRLELLKTCVPAGSKVMIDPNEAWTSKEALTKLVAIREAGHDL--LWVEDPILRHDHDGLR 236 (389)
T ss_dssp TTCCEEEEECCCSSHHHHHHHHHHHHTTSCTTCEEEEECTTCBCHHHHHHHHHHHHHTTCCC--SEEESCBCTTCHHHHH
T ss_pred hCCCEEEEccCCCCHHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCc--eEEeCCCCCcCHHHHH
Confidence 999999999997 889999999999994 7899999999999999999999999999 886 5999999999999999
Q ss_pred HHHHhhcccc-CCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEc-ccCchhHHHH
Q 014285 294 DVSNFARDTY-GISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMID-GMIETRLATG 370 (427)
Q Consensus 294 ~L~~~~r~~~-~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~-s~~es~ig~~ 370 (427)
+|++ ++ ++||++||++ +..+++++++.+++|++++| | ++++++++++|+++|+++++| ++.|
T Consensus 237 ~l~~----~~~~iPIa~dE~~-~~~~~~~~i~~~~~d~v~ik----GGit~a~~i~~~A~~~gi~~~~~~~~~e------ 301 (389)
T 2oz8_A 237 TLRH----AVTWTQINSGEYL-DLQGKRLLLEAHAADILNVH----GQVTDVMRIGWLAAELGIPISIGNTFLE------ 301 (389)
T ss_dssp HHHH----HCCSSEEEECTTC-CHHHHHHHHHTTCCSEEEEC----SCHHHHHHHHHHHHHHTCCEEECCCGGG------
T ss_pred HHHh----hCCCCCEEeCCCC-CHHHHHHHHHcCCCCEEEEC----cCHHHHHHHHHHHHHcCCeEeecccHHH------
Confidence 9986 67 8999999999 99999999999999999999 7 999999999999999999999 7765
Q ss_pred HHHHHHhhcCCcceeccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 371 FALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 371 a~~hlaaal~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+++|++++++++.+.|+. ++ +..+++.+++.++||++.+|++||||+++|++.|
T Consensus 302 a~lhlaaa~~~~~~~e~~-~~-~~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 355 (389)
T 2oz8_A 302 AGVHMAVALPEVEWLEYS-FQ-NFDHLVEQPIEIRDGYAYAPDRPGHGLVLSEKAR 355 (389)
T ss_dssp TTHHHHHHSTTEEEEEEC-CC-SCGGGBSSCCCEETTEEECCSSSBTSCCBCHHHH
T ss_pred HHHHHHhcCCCCceeecc-hH-HHhhhccCCceEECCEEECCCCCcCCCccCHHHH
Confidence 688999999998888865 32 3466777888999999999999999999999865
|
| >2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-61 Score=491.94 Aligned_cols=336 Identities=19% Similarity=0.248 Sum_probs=292.4
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCCCH
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTL 144 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~~~ 144 (427)
|||++|+++.+. |. . +.++|+|+|++| +||||+ +. +.+ .......++++.|.|+|+++.++
T Consensus 6 MkI~~i~~~~~~-~~-~------------~~v~V~v~td~G-~G~Ge~-~~-g~~--~~~~~~~i~~l~p~liG~d~~~~ 66 (410)
T 2qq6_A 6 PRITRVETAAIR-AV-G------------PSVLVRVWAGDE-HGLGEC-YP-SAP--AAGIHHIVMNMEEQLLGEDPRDV 66 (410)
T ss_dssp CCCCEEEEEEEC-CC--------------CEEEEEEEETTE-EEEEEE-CC-CSC--HHHHHHHHHTTHHHHTTCCTTCH
T ss_pred ceEeEEEEEEEC-CC-C------------CEEEEEEEECCc-EEEEEe-cC-CCC--hHHHHHHHHHHHHHhCCCCccHH
Confidence 899999999986 43 1 148999999999 999999 52 111 22233345568899999999999
Q ss_pred HHHHHHHHHHCCC-----ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecC--C-------------
Q 014285 145 NFALDEIARILPG-----SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPA--V------------- 203 (427)
Q Consensus 145 ~~~~~~l~~~~~g-----~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~--~------------- 203 (427)
+.+|+.|.+...+ ...+++++||||||||++||..|+|||+||||. ++++|+|.+++. .
T Consensus 67 ~~i~~~l~~~~~~~~~~~~~~~~A~~aid~AlwDl~gk~~g~Pl~~lLGg~~~~~vp~y~~~~~g~~~h~~~~~~~~~~~ 146 (410)
T 2qq6_A 67 ERLYEKMRRWNIFTGGQAGAVITALSGIETALWDLAGKLQGVPVYRLLGGAFRRRVRLYADCNAGTVDAAAHHIEGGLFE 146 (410)
T ss_dssp HHHHHHHHHHTTTTTSSSSHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCSCSEEEEEEECCCSEECTTCCEEECCTTC
T ss_pred HHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHhHhHcCCcHHHHcCCCccCceeEEEeccccccccccccccccccc
Confidence 9999999875321 234689999999999999999999999999996 789999987642 3
Q ss_pred --CHHHHHHHHHHHhhcCCcEEEEec----cC-------------CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHH
Q 014285 204 --SPAEASELASKYCKLGFSTLKLNV----GR-------------NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEA 263 (427)
Q Consensus 204 --~~~~~~~~~~~~~~~Gf~~iKlKi----G~-------------~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A 263 (427)
+++++.+.+++++++||+++|+|+ |. +++.|++++++||+ +++++.|+||+|++|++++|
T Consensus 147 ~~~~~~~~~~a~~~~~~Gf~~vKik~~~~~G~~~~~~~G~~~~~~~~~~~~e~v~avRea~G~d~~l~vDan~~~~~~~a 226 (410)
T 2qq6_A 147 EGSNEEYIAVAREAVERGFDAIKLDVDDITGPLHRDFWNGAISPREHEAMVARVAAVREAVGPEVEVAIDMHGRFDIPSS 226 (410)
T ss_dssp STHHHHHHHHHHHHHHTTCSEEEEECCCSSSTTCSCSSSCCCCHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEeeccccCCcccCCcCccccchhhHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHH
Confidence 788899999999999999999999 64 45779999999999 68999999999999999999
Q ss_pred HHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHH
Q 014285 264 VEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLG 342 (427)
Q Consensus 264 ~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~ 342 (427)
+++++.|+++++ .|||||++++|++++++|++ ++++||++||++.+..+++++++.+++|++++|++++| +++
T Consensus 227 ~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGite 300 (410)
T 2qq6_A 227 IRFARAMEPFGL--LWLEEPTPPENLDALAEVRR----STSTPICAGENVYTRFDFRELFAKRAVDYVMPDVAKCGGLAE 300 (410)
T ss_dssp HHHHHHHGGGCC--SEEECCSCTTCHHHHHHHHT----TCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBHHHHTHHHH
T ss_pred HHHHHHHhhcCC--CeEECCCChhhHHHHHHHHh----hCCCCEEeCCCcCCHHHHHHHHHcCCCCEEecCccccCCHHH
Confidence 999999999997 49999999999999999985 68999999999999999999999999999999999998 999
Q ss_pred HHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcceeccCCC-cccccCCCC--CceeeeCcEEecCCCCCccc
Q 014285 343 TLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTP-FLLSEDPFV--GGCEVSGAIYNFTNARGQGG 419 (427)
Q Consensus 343 ~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~~~p-~~~~~~~~~--~~~~~~~G~i~~p~~pGlGv 419 (427)
+++++++|+++|+++++|++. |+|++++++|++++++|+.++|+... ..+..+++. +++.++||++.+|++||||+
T Consensus 301 ~~~ia~~A~~~g~~~~~h~~~-s~i~~aa~~hlaaa~~~~~~~e~~~~~~~~~~d~~~~~~~~~~~~G~i~~p~~PGlGv 379 (410)
T 2qq6_A 301 AKRIANLAELDYIPFAPHNVS-SPVGTVAAAHVCAAVSNFAVLEWHAIDMPHWEDFVRYPGGPVIREGHIELTEEPGLGL 379 (410)
T ss_dssp HHHHHHHHHTTTCCBCCBCCS-CHHHHHHHHHHHHSCTTBCCEEECCTTCTTGGGGBCCSSSSSEETTEEECCSSSGGGC
T ss_pred HHHHHHHHHHcCCeEeecCCC-cHHHHHHHHHHHHhCCCceeeecccccchhhhhhcccCCCceeeCCEEECCCCCCCCc
Confidence 999999999999999999985 99999999999999999888776321 112467776 78889999999999999999
Q ss_pred ccCCCcC
Q 014285 420 FLKWTIV 426 (427)
Q Consensus 420 e~d~~~v 426 (427)
|+|++++
T Consensus 380 ~~d~~~l 386 (410)
T 2qq6_A 380 ELDEEAA 386 (410)
T ss_dssp CBCHHHH
T ss_pred eeCHHHH
Confidence 9998865
|
| >2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-62 Score=497.33 Aligned_cols=348 Identities=19% Similarity=0.262 Sum_probs=298.2
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchH---HHHHHHH-HHhhHhcCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQT---KALVKVR-EACQFLRQSP 140 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~---~~~~~~~-~~~~~l~g~~ 140 (427)
|||++++++.+++|++.||.++. ++.++|+|+|+ |++||||+.+.+.+ ++.. .....++ .++|.|+|+
T Consensus 3 mkI~~i~~~~~~~pl~~p~~~s~-----~~~~~V~v~td-G~~G~GE~~~~~~~-~~~~~~~~~~~~i~~~l~~~l~G~- 74 (401)
T 2hzg_A 3 LKIDAVDLFYLSMPEVTDAADGS-----QDALLVRVAAG-GHIGWGECEAAPLP-SIAAFVCPKSHGVCRPVSDSVLGQ- 74 (401)
T ss_dssp CBEEEEEEEEEECSSCCSSSCGG-----GEEEEEEEEET-TEEEEEEECSCHHH-HHHHHHCCCSBTTBCCGGGGTTTC-
T ss_pred CEEEEEEEEEEeccCCCcccccc-----ceEEEEEEEeC-CcEEEEeeecccCC-cccchhHHHHHHHHHHHHHHhCCC-
Confidence 89999999999999999999986 77899999999 99999999875421 1111 1112234 378999999
Q ss_pred CCCHHH-HHHHHHHH-CCC-Chhhh--HHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeee-cCCCHHHHHHHHH
Q 014285 141 PTTLNF-ALDEIARI-LPG-SEFAS--VRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITI-PAVSPAEASELAS 213 (427)
Q Consensus 141 ~~~~~~-~~~~l~~~-~~g-~~~~~--a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i-~~~~~~~~~~~~~ 213 (427)
+.+++. +++.+... ..| ...++ +++||||||||++||..|+|||+||||. ++++|+|.++ +..+++++.+.++
T Consensus 75 ~~~~~~~l~~~~~~~~~~g~~~~~~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~vp~~~~~~~~~~~~~~~~~a~ 154 (401)
T 2hzg_A 75 RLDGPDDIARIAALVGYNSMDLLQAPHMLSGIEMALWDLLGRRLSAPAWALLGYSASHGKRPYASLLFGDTPQETLERAR 154 (401)
T ss_dssp BCSSHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCSCCCCBEEEEEEECCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHHHHhCCcHHHHcCCCCCCceEeeEEcCCCCCHHHHHHHHH
Confidence 888752 22222111 012 12357 8999999999999999999999999997 4899999654 4678999999999
Q ss_pred HHhhcCCcEEEEe---ccCCc-hhhHHHHHHHHH-hCCCcEEEEeCCCCC--CHHHHHHHHHHhhhCCCCCceEeCCCCC
Q 014285 214 KYCKLGFSTLKLN---VGRNI-TADFDVLQAIHA-VHPHCSFILDANEGY--TSEEAVEVLGKLNDMGVIPVLFEQPVHR 286 (427)
Q Consensus 214 ~~~~~Gf~~iKlK---iG~~~-~~d~~~l~~ir~-~~~~~~L~vDAN~~~--s~~~A~~~l~~L~~~~l~~~~iEqP~~~ 286 (427)
+++++||+++|+| +|.++ +.|++++++||+ .++++.|+||+|++| ++++|+++++.|+++++ .|||||+++
T Consensus 155 ~~~~~Gf~~iKik~spvG~~~~~~~~e~v~avr~a~G~d~~l~vDan~~~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~ 232 (401)
T 2hzg_A 155 AARRDGFAAVKFGWGPIGRGTVAADADQIMAAREGLGPDGDLMVDVGQIFGEDVEAAAARLPTLDAAGV--LWLEEPFDA 232 (401)
T ss_dssp HHHHTTCSEEEEESTTTTSSCHHHHHHHHHHHHHHHCSSSEEEEECTTTTTTCHHHHHTTHHHHHHTTC--SEEECCSCT
T ss_pred HHHHhCCCeEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCC--CEEECCCCc
Confidence 9999999999999 99888 999999999999 589999999999999 99999999999999997 499999999
Q ss_pred CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCch
Q 014285 287 DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIET 365 (427)
Q Consensus 287 ~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es 365 (427)
+|++++++|++ .++++||++||++.+..+++++++.+++|++++|++++| ++++++++++|+++|+++++| ++||
T Consensus 233 ~d~~~~~~l~~---~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~h-~~es 308 (401)
T 2hzg_A 233 GALAAHAALAG---RGARVRIAGGEAAHNFHMAQHLMDYGRIGFIQIDCGRIGGLGPAKRVADAAQARGITYVNH-TFTS 308 (401)
T ss_dssp TCHHHHHHHHT---TCCSSEEEECTTCSSHHHHHHHHHHSCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEEEC-CCSC
T ss_pred cCHHHHHHHHh---hCCCCCEEecCCcCCHHHHHHHHHCCCCCEEEeCcchhCCHHHHHHHHHHHHHcCCEEecC-CCCc
Confidence 99999999973 057899999999999999999999999999999999997 999999999999999999999 8899
Q ss_pred hHHHHHHHHHHhhcCCcceeccCCC-cccccCCCCCceeee-CcEEecCCCCCcccccCCCcC
Q 014285 366 RLATGFALHLAAGLGCIKYVNLNTP-FLLSEDPFVGGCEVS-GAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 366 ~ig~~a~~hlaaal~~~~~~e~~~p-~~~~~~~~~~~~~~~-~G~i~~p~~pGlGve~d~~~v 426 (427)
+++++|++|++++++|+.++|++.. ..+.++++.+++.++ ||++.+|++||||+++|++++
T Consensus 309 ~i~~~a~~hlaaa~~~~~~~e~~~~~~~~~~d~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 371 (401)
T 2hzg_A 309 HLALSASLQPFAGLEADRICEYPAAPQQLALDITGDHIRPDAEGLIRAPEAPGLGLQVAASAL 371 (401)
T ss_dssp HHHHHHHHGGGTTCTTCCEEEEESSCCHHHHHTBSSCCCCCTTSCBCSCSSSBTSCCBCHHHH
T ss_pred HHHHHHHHHHHHhCCCceeeeccCCcchHHHHhccCCceeccCCeEECCCCCcCCceECHHHH
Confidence 9999999999999999888876421 113567777888899 999999999999999998865
|
| >1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-60 Score=483.88 Aligned_cols=340 Identities=17% Similarity=0.170 Sum_probs=286.1
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEc---CCceEEEEeecCCCCCcchHHHHHHHHH-HhhHhcCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELS---NGCVGWGEVAVVPLVTGDQTKALVKVRE-ACQFLRQSP 140 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~---~G~~G~GE~~~~~~~s~~~~~~~~~~~~-~~~~l~g~~ 140 (427)
|||++++ .+++|++.||.++.++++.++.++|+|+|+ +|.+||||+.+ +++.+.. ...+++ ++|.|+|++
T Consensus 6 mkI~~i~--~~~~pl~~p~~~~~~~~~~~~~~~V~v~td~~~~G~~G~GE~~~--~~~~~~~--~~~i~~~l~~~l~G~d 79 (392)
T 1tzz_A 6 VRIVDVR--EITKPISSPIRNAYIDFTKMTTSLVAVVTDVVREGKRVVGYGFN--SNGRYGQ--GGLIRERFASRILEAD 79 (392)
T ss_dssp CCEEEEE--EEEEECCC---------CCCEEEEEEEEEEEECSSSEEEEEEEC--CTTSCCC--HHHHHHTHHHHHHTSC
T ss_pred cEEeEEE--EEEecCCCcccccccccCcceEEEEEEEECCCCCCCEEEEEecC--CCchHHH--HHHHHHHHHHHHcCCC
Confidence 8999999 788999999999999999999999999999 99999999986 2233221 222443 789999999
Q ss_pred C----------CCHHHHHHHHHHHCC--CC-hhhhHHHHHHHHHHHHHHhhCCCChhhhhC----C-CCCceeeeeeecC
Q 014285 141 P----------TTLNFALDEIARILP--GS-EFASVRAGVEMALIDAVANSIDIPLWRLFG----G-ASNSLSTAITIPA 202 (427)
Q Consensus 141 ~----------~~~~~~~~~l~~~~~--g~-~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llg----g-~~~~ip~~~~i~~ 202 (427)
+ .+++.+|+.|.+... +. ..+++++||||||||++||..|+|||+||| | .++++|+|.+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~a~~aid~AlwDl~ak~~g~Pl~~llG~~~~g~~~~~v~~y~~~~~ 159 (392)
T 1tzz_A 80 PKKLLNEAGDNLDPDKVWAAMMINEKPGGHGERSVAVGTIDMAVWDAVAKIAGKPLFRLLAERHGVKANPRVFVYAAGGY 159 (392)
T ss_dssp GGGSBCTTSSSBCHHHHHHHHTTTCCSCCCSHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHTTSCCCCEEEEEEECCC
T ss_pred chhhhcccccccCHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHHcCCcHHHHcCCccCCCcCCCeeEEEeCCc
Confidence 9 999999999976422 21 357899999999999999999999999999 8 5788999876432
Q ss_pred ----CCHHHHHHHHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCC
Q 014285 203 ----VSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVI 276 (427)
Q Consensus 203 ----~~~~~~~~~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~ 276 (427)
.+++++.+.+++++++||+++|+|+|. +++.|++++++||+ .++++.|+||+|++|++++|+++++.|+++++
T Consensus 160 ~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i- 238 (392)
T 1tzz_A 160 YYPGKGLSMLRGEMRGYLDRGYNVVKMKIGGAPIEEDRMRIEAVLEEIGKDAQLAVDANGRFNLETGIAYAKMLRDYPL- 238 (392)
T ss_dssp C----CHHHHHHHHHHHHTTTCSEEEEECSSSCHHHHHHHHHHHHHHHTTTCEEEEECTTCCCHHHHHHHHHHHTTSCC-
T ss_pred ccCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHcCC-
Confidence 378999999999999999999999996 78999999999999 58999999999999999999999999999997
Q ss_pred CceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcC----CCcEEEeCCCCcc-HHHHHHHHHHHH
Q 014285 277 PVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQEN----LASVVNIKLAKFG-VLGTLQIIKATR 351 (427)
Q Consensus 277 ~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~----a~~~i~lk~~~~G-i~~~~~~~~~A~ 351 (427)
.|||||++++|++++++|++ ++++||++||++.+..+++++++.+ ++|++++|++++| ++++++++++|+
T Consensus 239 -~~iEqP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~~~~~d~v~ik~~~~GGit~~~~i~~~A~ 313 (392)
T 1tzz_A 239 -FWYEEVGDPLDYALQAALAE----FYPGPMATGENLFSHQDARNLLRYGGMRPDRDWLQFDCALSYGLCEYQRTLEVLK 313 (392)
T ss_dssp -SEEECCSCTTCHHHHHHHTT----TCCSCEEECTTCCSHHHHHHHHHHSCCCTTTCEECCCTTTTTCHHHHHHHHHHHH
T ss_pred -CeecCCCChhhHHHHHHHHh----hCCCCEEECCCCCCHHHHHHHHHcCCCccCCcEEEECccccCCHHHHHHHHHHHH
Confidence 49999999999999999975 6899999999999999999999999 9999999999997 999999999999
Q ss_pred HcCCc---EEEcccCchhHHHHHHHHHHhhcCCc---ceeccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCc
Q 014285 352 KSGLH---LMIDGMIETRLATGFALHLAAGLGCI---KYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTI 425 (427)
Q Consensus 352 ~~gi~---~~~~s~~es~ig~~a~~hlaaal~~~---~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~ 425 (427)
++|++ +++|+ . + .+.+|+++++++. .+.|++.|+ .+++. ++.++||++.+|++||||+++|++.
T Consensus 314 ~~gi~~~~~~~~~---~--~-~~~~hl~aa~~~~~~~~~~~~~~~~---~~~~~-~~~~~~G~~~~p~~PGlGv~~d~~~ 383 (392)
T 1tzz_A 314 THGWSPSRCIPHG---G--H-QMSLNIAAGLGLGGNESYPDLFQPY---GGFPD-GVRVENGHITMPDLPGIGFEGKSDL 383 (392)
T ss_dssp HTTCCGGGBCCSC---C--B-HHHHHHHHHHTCSCEEECTTCSTTT---BSCST-TCCCBTTEEECCCCSBTSGGGCHHH
T ss_pred HCCCCCceEeecH---H--H-HHHHHHHHhCCCccccccccccchH---HhccC-CcceeCCEEECCCCCccCCccCHHH
Confidence 99999 99995 1 1 2358999998875 334655543 34455 7888999999999999999999986
Q ss_pred C
Q 014285 426 V 426 (427)
Q Consensus 426 v 426 (427)
+
T Consensus 384 ~ 384 (392)
T 1tzz_A 384 Y 384 (392)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3ekg_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, nysgrc, L-rhamnonate dehydratase,target PSI-2; HET: TLA; 1.60A {Azotobacter vinelandii avop} PDB: 2oz3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-60 Score=481.64 Aligned_cols=316 Identities=18% Similarity=0.255 Sum_probs=265.2
Q ss_pred ccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHH-HHHhhHhcCCCCCCHHHHHHHHHHHC--CC--
Q 014285 83 LSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKV-REACQFLRQSPPTTLNFALDEIARIL--PG-- 157 (427)
Q Consensus 83 ~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~-~~~~~~l~g~~~~~~~~~~~~l~~~~--~g-- 157 (427)
++++.| .+.++.++|||+||+|++||||+.. ++. ....+ +.+.|.|+|+++.+++.+|+.|++.. .|
T Consensus 49 ~~ts~g-~~~~~~v~V~v~td~G~~G~Ge~~~-----g~~--~~~~i~~~l~p~LiG~dp~~ie~i~~~m~~~~~~~g~~ 120 (404)
T 3ekg_A 49 SRRSFG-INVLGTLVVEIEASDGNVGFAVTTG-----GEP--AAYIVEKHLARFLEGARVTDIERIWDQMYNSTLYYGRK 120 (404)
T ss_dssp CTGGGT-TTSSCEEEEEEEETTSCEEEEEEEC-----HHH--HHHHHHHTTHHHHTTSBTTCHHHHHHHHHHHHGGGCSS
T ss_pred cccccC-cccccEEEEEEEECCCCEEEEeCCC-----cHH--HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhhhcCCC
Confidence 344555 4567889999999999999999863 211 11223 34889999999999999999998642 22
Q ss_pred ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC-------
Q 014285 158 SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR------- 229 (427)
Q Consensus 158 ~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~------- 229 (427)
....++++|||||||||+||.+|+|||+||||. ++++|+|.+.. +++ ..+++||+++|+|+|.
T Consensus 121 G~~~~A~sAID~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~g~--~~~-------~~~~~Gf~~~K~Kv~~g~~~g~~ 191 (404)
T 3ekg_A 121 GLVINTISGVDLALWDLLGKVRREPVHQLLGGAVRDELQFYATGA--RPD-------LAQKMGFIGGKMPLHHGPSEGEE 191 (404)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSSSEEEEEEESS--CHH-------HHHHTTCSEEEEECCCCGGGHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHhCCCHHHHcCCCCCCeeEEecCCC--CHH-------HHHHcCCCEEEEecCCCCccccc
Confidence 234578999999999999999999999999997 78999997632 343 2347899999999964
Q ss_pred CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEE
Q 014285 230 NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVV 308 (427)
Q Consensus 230 ~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa 308 (427)
++++|++++++||+ .+|++.|+||||++|++++|++++++|+++++ .|||||++++|++++++|++.. .+++|||
T Consensus 192 ~~~~di~~v~avRea~G~~~~L~vDaN~~w~~~~A~~~~~~Le~~~l--~~iEeP~~~~d~~~~a~l~~~~--~~pi~Ia 267 (404)
T 3ekg_A 192 GLKKNLEELATMRERVGPDFWLMFDCWMSLDLNYATRLARGAREYGL--KWIEEALPPDDYWGYAELRRNA--PTGMMVT 267 (404)
T ss_dssp HHHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGTC--CEEECCSCTTCHHHHHHHHHHS--CTTCEEE
T ss_pred cHHHHHHHHHHHHHHhCCCCeEEecCCCCCCHHHHHHHHHHHhhcCC--cEEecCCCcccHHHHHHHHHhc--CCCeEEE
Confidence 25789999999999 58999999999999999999999999999997 5999999999999999998721 2345699
Q ss_pred ecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcceecc
Q 014285 309 ADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNL 387 (427)
Q Consensus 309 ~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~ 387 (427)
+||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. .+++|++++++|+.+.|+
T Consensus 268 ~gE~~~~~~~~~~li~~~a~dii~~d~~~~GGitea~kia~lA~a~gv~v~~h~~~------~a~~hl~aa~pn~~~~E~ 341 (404)
T 3ekg_A 268 TGEHEATRWGFRMLLEMGCCDIIQPDVGWCGGVTELLKISALADAHNALVVPHGSS------VYSYHFVATRQNSPFAEF 341 (404)
T ss_dssp ECTTCCHHHHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHHTTCEECCCCCT------HHHHHHHTTCTTCCSEEE
T ss_pred ecCccCCHHHHHHHHHcCCCCeEecChhhcCCccHHHHHHHHHHHcCCEEEecCcH------HHHHHHHHhCCCcceeee
Confidence 9999999999999999999999999999997 999999999999999999999852 279999999999988775
Q ss_pred CC--C-----cccccCCCCCceeeeCcEEecC--CCCCcccccCCCc
Q 014285 388 NT--P-----FLLSEDPFVGGCEVSGAIYNFT--NARGQGGFLKWTI 425 (427)
Q Consensus 388 ~~--p-----~~~~~~~~~~~~~~~~G~i~~p--~~pGlGve~d~~~ 425 (427)
.. | ..+..+++.+++.++||++.+| ++||||+|+|+++
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~dG~i~vP~~~~PGLGveld~~~ 388 (404)
T 3ekg_A 342 LMMAPKADQVVPMFHPQLLGEPVPENGRMRLSRLDQPGFGVTLNPEC 388 (404)
T ss_dssp ECCSTTSCSCCCTTTTTEETCCCCBTTEEEGGGCCSSBTSCEECTTS
T ss_pred ccccccccccchhhhhcccCCCcccCCEEECCCCCCCcccceECccc
Confidence 32 1 1223455666677899999999 9999999999985
|
| >3fxg_A Rhamnonate dehydratase; structural gemomics, enolase superfamily, NYSGXRC, target 9265J, lyase, structural genomics, PSI-2; 1.90A {Gibberella zeae ph-1} PDB: 2p0i_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-60 Score=487.67 Aligned_cols=340 Identities=16% Similarity=0.197 Sum_probs=281.0
Q ss_pred ccccccccCC--cceeeEEEEEEEEEEeeccccccc-----cceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHH
Q 014285 52 TSLGFKNLTE--TFWVDVQRAEGRELNVALSAPLSL-----GLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTK 124 (427)
Q Consensus 52 ts~g~~~~~~--~~~~~I~~i~~~~~~~pl~~p~~~-----a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~ 124 (427)
.+.|.|+... +|.+. .+++.||++++.. +.|. ..++.++|||+||+|++||||+.+.+ .
T Consensus 23 ~~~~~~~~~~~~~~~~~------~~i~~p~~~~~~~~~~~ts~g~-~~~~~vlV~V~tddGi~G~Ge~~~~~-------~ 88 (455)
T 3fxg_A 23 GSGGDYHNVKGGHWLID------SDISTPASKWEQYKKSRTSWGI-NVLGSFLVEIEATDGTVGFATGFGGP-------P 88 (455)
T ss_dssp SCSSCTTCCCTTCHHHH------SCCCCTTTTSGGGTSCTTTTTT-TSSCEEEEEEEETTSCEEEEEEECHH-------H
T ss_pred cCCCCCCCCCCCccccc------ccccCccccccccccccccccc-ccceEEEEEEEECCCCEEEEeCcCCH-------H
Confidence 4566665553 55443 3466889888743 3332 24788999999999999999986321 1
Q ss_pred HHHHH-HHHhhHhcCCCCCCHHHHHHHHHHHC--CC--ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeee
Q 014285 125 ALVKV-REACQFLRQSPPTTLNFALDEIARIL--PG--SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAI 198 (427)
Q Consensus 125 ~~~~~-~~~~~~l~g~~~~~~~~~~~~l~~~~--~g--~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~ 198 (427)
....+ +.+.|.|+|++|.+++.+|+.|++.. .| ....++++|||||||||+||.+|+|||+||||. +++||+|.
T Consensus 89 ~~~~i~~~lap~LiG~dp~~ie~i~~~m~~~~~~~g~~G~~~~A~sAID~ALwDl~gK~~g~Pv~~LLGG~~rd~vp~y~ 168 (455)
T 3fxg_A 89 ACWLVHQHFERFLIGADPRNTNLLFEQMYRASMFYGRKGLPIAVISVIDLALWDLLGKVRNEPVYRLIGGATKERLDFYC 168 (455)
T ss_dssp HHHHHHHTTHHHHTTCCTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHTCBGGGGTTCCSCSEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCcchHHHHHHHHHHhhhhccCCcchHHHHHHHHHHHHHHHHHHcCCCHHHHhCCccCCeeEEee
Confidence 12223 45889999999999999999998753 22 233568999999999999999999999999997 78999998
Q ss_pred eecCCCHHHHHHHHHHHhhcCCcEEEEeccC-------CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHh
Q 014285 199 TIPAVSPAEASELASKYCKLGFSTLKLNVGR-------NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKL 270 (427)
Q Consensus 199 ~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~-------~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L 270 (427)
+. .+++ ..+++||+++|+|+|. ++++|++++++||+ .+|++.||||||++|++++|++++++|
T Consensus 169 ~g--~~~~-------~~~~~Gf~~~KlKv~~~~~~G~~~~~~di~rv~avRea~G~d~~L~vDaN~~wt~~~Ai~~~~~L 239 (455)
T 3fxg_A 169 TG--PEPT-------AAKAMGFWGGKVPLPFCPDDGHEGLRKNVEFLRKHREAVGPDFPIMVDCYMSLNVSYTIELVKAC 239 (455)
T ss_dssp ES--SCHH-------HHHHHTCSCEEEECCCCGGGHHHHHHHHHHHHHHHHHHHCSSSCEEEECTTCCCHHHHHHHHHHT
T ss_pred cC--CCHH-------HHHHcCCCEEEEcCCCCcccccccHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHhc
Confidence 64 2343 2357899999999964 25789999999999 579999999999999999999999999
Q ss_pred hhCCCCCceEeCCCCCCChhhHHHHHHhhcccc-CCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHH
Q 014285 271 NDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTY-GISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIK 348 (427)
Q Consensus 271 ~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~-~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~ 348 (427)
+++++ .|||||++++|+++|++|++ ++ .+|||+||++.+..+++++++.+++|++|+|++++| +++++++++
T Consensus 240 e~~~l--~~iEEPl~~dd~~~la~L~~----~~~~iPIA~gEs~~s~~d~~~li~~~avDiiq~d~~~~GGItea~kIa~ 313 (455)
T 3fxg_A 240 LDLNI--NWWEECLSPDDTDGFALIKR----AHPTVKFTTGEHEYSRYGFRKLVEGRNLDIIQPDVMWLGGLTELLKVAA 313 (455)
T ss_dssp GGGCC--SEEECCSCGGGGGGHHHHHH----HCTTSEEEECTTCCHHHHHHHHHTTCCCSEECCCTTTSSCHHHHHHHHH
T ss_pred ccCCc--ceecCCCCcchHHHHHHHHH----hCCCCeEECCCccCCHHHHHHHHHcCCCCEEEECccccCCHHHHHHHHH
Confidence 99997 59999999999999999986 45 589999999999999999999999999999999997 999999999
Q ss_pred HHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcceeccCC--Cc-----ccccCCCCCceeeeCcEEecC--CCCCccc
Q 014285 349 ATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNT--PF-----LLSEDPFVGGCEVSGAIYNFT--NARGQGG 419 (427)
Q Consensus 349 ~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~~~--p~-----~~~~~~~~~~~~~~~G~i~~p--~~pGlGv 419 (427)
+|+++|+++++|++. .+++|++++++|+.+.|+.. |. .+..+++.+++.++||++.+| ++|||||
T Consensus 314 lA~a~Gv~v~~H~~~------~aslHlaaa~pn~~~~E~~~~~~~~~~~~~~~~~l~~~~~~~~dG~i~vp~~d~PGLGv 387 (455)
T 3fxg_A 314 LAAAYDVPVVPHASG------PYSYHFQISQPNTPFQEYLANSPDGKSVLPVFGDLFIDEPIPTKGYLTTADLDKPGFGL 387 (455)
T ss_dssp HHHTTTCCBCCCSCT------HHHHHHHTTCTTCCCEEEECCSTTSSSCCCTTGGGBSCCCCCTTSEEETGGGCSSBTCC
T ss_pred HHHHcCCEEEecchH------HHHHHHHHhCCCCceEeecccccccccccchhcccccCCCeeeCCEEeCCCCCCCccCc
Confidence 999999999999863 37899999999998887532 21 122455656667899999999 9999999
Q ss_pred ccCCCcC
Q 014285 420 FLKWTIV 426 (427)
Q Consensus 420 e~d~~~v 426 (427)
|+|++++
T Consensus 388 elde~~~ 394 (455)
T 3fxg_A 388 TINPAAR 394 (455)
T ss_dssp CBCHHHH
T ss_pred ccCHHHH
Confidence 9999875
|
| >3caw_A O-succinylbenzoate synthase; structural genomics, PSI-2, NYSGXRC, target 9462A, protein structure initiative; 1.87A {Bdellovibrio bacteriovorus HD100} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-60 Score=473.12 Aligned_cols=302 Identities=17% Similarity=0.194 Sum_probs=255.2
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCCCH
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTL 144 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~~~ 144 (427)
|||+ ++++++|++.||.++ ++++.++.++|+|+|++|++||||+.+.++++++..+. . +.+.+
T Consensus 2 MkI~---~~~~~~pl~~p~~~s-~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~e~~~~--~---l~~~l-------- 64 (330)
T 3caw_A 2 IKIS---YSPYTLKPVQSLNAA-TAATAREGVLLKVEWNDGLYGFADLHPWPELGDLSLEE--Q---LSDLR-------- 64 (330)
T ss_dssp -CEE---EEEEEECBC-----------CEEEEEEEEECTTSCEEEEEECCCGGGTCCCHHH--H---HHHHH--------
T ss_pred cEEE---EEEEEeecCCCeEee-eEEEEeeEEEEEEEECCCCEEEEeecCCCCcCcccHHH--H---HHHHH--------
Confidence 6787 889999999999999 99999999999999999999999999877666644322 1 22222
Q ss_pred HHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeec-C--CCHHHHHHHHHHHhhcCCc
Q 014285 145 NFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIP-A--VSPAEASELASKYCKLGFS 221 (427)
Q Consensus 145 ~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~-~--~~~~~~~~~~~~~~~~Gf~ 221 (427)
| +...+++++|||+||||++||..|+|||+ || +++|+|++++ . .+++++. +++++||+
T Consensus 65 ------l-----~~~~~~a~said~AlwDl~gk~~g~Pl~~--Gg--~~v~~~~~~~~~~~~~~~~~~----~~~~~G~~ 125 (330)
T 3caw_A 65 ------M-----GRMTTQIEQSIWLARRDALLRKEKKHVFD--GG--EKIKNNYLLSHFQDLKPGFLD----GLKNEGYN 125 (330)
T ss_dssp ------H-----TCCCHHHHHHHHHHHHHHHHHHTTCBTTT--TS--CCCCBCEEECTTSCCCTTHHH----HHHHHTCC
T ss_pred ------h-----ccchHHHHHHHHHHHHHHHHHHcCCcccc--CC--CceEEEEEecCCCCCCHHHHH----HHHHcCCc
Confidence 1 11336799999999999999999999999 87 8999999988 6 6888776 55678999
Q ss_pred EEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhh---CCCCCceEeCCCCCC-ChhhHHHHHH
Q 014285 222 TLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLND---MGVIPVLFEQPVHRD-DWSGLHDVSN 297 (427)
Q Consensus 222 ~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~---~~l~~~~iEqP~~~~-d~~~~~~L~~ 297 (427)
+||+|+|.++++|++++++||+ |+++||||||++|++++|++++++|++ +++ .|||||++++ |++++ |+
T Consensus 126 ~~KiKvg~~~~~d~~~v~avr~--~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~~l--~~iEqP~~~~~d~~~~--l~- 198 (330)
T 3caw_A 126 TVKVKMGRDLQKEADMLTHIAA--SGMRMRLDFNALGSWQTFEKFMVNLPLTVRPLI--EYVEDPFPFDFHAWGE--AR- 198 (330)
T ss_dssp EEEEECSSCHHHHHHHHHHHHH--TTCEEEEECTTCSCHHHHHHHHHTSCTTTGGGE--EEEECCSSCCHHHHHH--HT-
T ss_pred EEEEecCCCHHHHHHHHHHHhC--CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCc--eEEECCCCCCccHHHH--HH-
Confidence 9999999999999999999999 999999999999999999999999999 886 5999999999 99988 53
Q ss_pred hhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCccHHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHh
Q 014285 298 FARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377 (427)
Q Consensus 298 ~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaa 377 (427)
++ +|||+||+ +..+++++++.+++|++|+|++++|++ +++++|+++|+++++||++||+||+++++|+++
T Consensus 199 ----~~-iPIa~dEs--~~~~~~~~i~~~a~d~v~~k~~~~Gi~---~i~~~A~~~gi~~~~~~~~es~ig~aa~~hlaa 268 (330)
T 3caw_A 199 ----KL-AKIALDNQ--YDKVPWGKIASAPFDVIVIKPAKTDVD---KAVAQCQKWNLKLAVTSYMDHPVGVVHAVGVAM 268 (330)
T ss_dssp ----TT-SCEEESTT--GGGCCTTTCSSCSCSEEEECTTTSCHH---HHHHHHHHTTCEEEEBCCSCCHHHHHHHHHHHH
T ss_pred ----hc-CcEEeCCC--CHHHHHHHHHcCCCCEEEechhhccHH---HHHHHHHHcCCcEEEeCccCcHHHHHHHHHHHc
Confidence 47 99999999 999999999999999999999999988 999999999999999999999999999999999
Q ss_pred ----hcCCccee--ccCCCcccccCCCCCceeeeCcEEecCCCCCcccc
Q 014285 378 ----GLGCIKYV--NLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGF 420 (427)
Q Consensus 378 ----al~~~~~~--e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve 420 (427)
+++|...+ |++.+++ .++++.+++.++||++.+|++||||+|
T Consensus 269 ~~~~a~~~~~~~~~dl~~~~~-~~d~~~~~~~~~~G~~~~p~~PGlGv~ 316 (330)
T 3caw_A 269 ELKDKYGDMILESGCLTHRLY-QMDSFAAELSTQGPYLLKNKGTGVGFD 316 (330)
T ss_dssp HHHHHHGGGBCCBBCCCGGGB-CCCTTGGGCCEETTEECCCSSSBTSCH
T ss_pred cchhcCCCcccccccCCchhh-hcccccCCceeECCEEECCCCCCCCHH
Confidence 88874332 4655443 678887888999999999999999998
|
| >4gfi_A Mandelate racemase/muconate lactonizing enzyme FA protein; putative L-Ala-L/D-Glu epimerase; HET: GLU; 1.90A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-60 Score=468.61 Aligned_cols=319 Identities=21% Similarity=0.285 Sum_probs=268.7
Q ss_pred EEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHH-HHHHHHHHhh-HhcCCCCCCHH
Q 014285 68 QRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTK-ALVKVREACQ-FLRQSPPTTLN 145 (427)
Q Consensus 68 ~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~-~~~~~~~~~~-~l~g~~~~~~~ 145 (427)
.+++++.+++||+.||++|.|+.++++.++|+|+ |+|++|||||+|+|.|+ ++.+ ....++.+.+ .+.+.+ .+
T Consensus 5 r~l~~~~~r~pl~~pF~is~g~~t~~~~v~V~i~-d~G~~G~GE~~p~~~~g-et~e~~~~~l~~~~~~~~~~~~---~~ 79 (329)
T 4gfi_A 5 RYLQATTERFAVAGSFTISRGTRTHADVVTCTIR-DGSFTGIGECVPYPRYG-ESIEGVTADIEAMADRVAAGLT---RQ 79 (329)
T ss_dssp CEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEE-ETTEEEEEEECCCGGGT-CCHHHHHHHHHTTHHHHHHTCC---HH
T ss_pred cEEEEEEEEEeccCcEEccCeEEEEeEEEEEEEE-ECCEEEEEeccCCCCCC-cCHHHHHHHHHHHhhhhccccc---hh
Confidence 5788899999999999999999999999999996 68999999999988765 3333 2233343333 333332 12
Q ss_pred HHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhhcCCcEEE
Q 014285 146 FALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGFSTLK 224 (427)
Q Consensus 146 ~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iK 224 (427)
.. ...+ + .+++++||||||||+.||..|+|+|+|+||. ++++++|.+++..+++++..++.+ ..||+.+|
T Consensus 80 ~~----~~~~-~--~~~a~aaid~AlwDl~gk~~g~pl~~llgG~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~K 150 (329)
T 4gfi_A 80 EL----QQVM-K--PGAARNAVDCALWDLEAKMSGKRAAEQVLGQPAQPLVTAYTISLADPDTMAAKTAE--NAGRPLLK 150 (329)
T ss_dssp HH----HHHS-C--SSHHHHHHHHHHHHHHHHHHSCCHHHHHHSSCCCCEECCEEECCCCHHHHHHHHHH--TTTSSEEE
T ss_pred hH----Hhhc-c--cHHHHHHHHHHHHHHHhhhcCCChhHHhCCCCCCceeeeecccCCChHHHHHHHHh--hccccEEE
Confidence 11 1112 2 2578999999999999999999999998887 678999999999999988766543 57999999
Q ss_pred EeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccC
Q 014285 225 LNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG 304 (427)
Q Consensus 225 lKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~ 304 (427)
+|+|. ++|+++++++|+++|+++||||||++||+++|+++++.|+++++. |||||++++|.+++.++ +++
T Consensus 151 ik~g~--~~d~~~v~~vr~~g~d~~l~vDaN~~w~~~~A~~~~~~l~~~~i~--~iEqP~~~~~~~~~~~~------~~~ 220 (329)
T 4gfi_A 151 IKTGT--ADDEARLRAVRAAAPEARIIIDANEGWNDDNIEYYLKLAAELKIS--LIEQPLPAGKDAMLARI------EHP 220 (329)
T ss_dssp EECCS--SCCHHHHHHHHHHCTTSEEEEECTTCCCTTTHHHHHHHHHHTTCC--EEECCSCTTSCGGGGGS------CCS
T ss_pred ecCCc--ccHHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHhhhhcCce--EEEecCCCccHHHHHHh------cCC
Confidence 99996 568999999999999999999999999999999999999999974 99999999988776543 578
Q ss_pred CeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcc
Q 014285 305 ISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIK 383 (427)
Q Consensus 305 iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~ 383 (427)
+||++||++.+..++.+.+ +++|++|+|++++| ++++++++++|+++|+++++||++||+|+++|++|+++.+ .
T Consensus 221 ipia~dEs~~~~~d~~~~~--~a~d~i~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~~es~i~~aa~~~la~~~---~ 295 (329)
T 4gfi_A 221 VLICADESVHSTEDLAGLR--DRYDAINIKLDKTGGLTEALVMKAEAERLGFTIMVGCMLGTSLGMAPAVLVAQGT---A 295 (329)
T ss_dssp SEEEESTTCCTGGGSGGGT--TTCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCSCCHHHHHHHHHHTTTC---S
T ss_pred CCchhccCCCCHHHHHHHh--hccCeEEecCceeCCHHHHHHHHHHHHHCCCEEEECCcchhHHHHHHHHHHHhCC---C
Confidence 9999999999999987654 67999999999997 9999999999999999999999999999999999998764 5
Q ss_pred eeccCCCcccccCCCCCceeeeCcEEecCCCCCc
Q 014285 384 YVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQ 417 (427)
Q Consensus 384 ~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGl 417 (427)
+.|+++|+.+.+|+. +..+.||.+.+|++|||
T Consensus 296 ~~dld~~~~l~~d~~--~~~~~dG~~~~P~~PGL 327 (329)
T 4gfi_A 296 FADLDGPLLLAEDRD--PGLVYEGSLVYPARPEL 327 (329)
T ss_dssp EECCCHHHHBSSCCS--SCCCEETTEECCCCTTT
T ss_pred eeccCcchhhhccCC--CCcEEcCeEECCCCCCC
Confidence 778999988887753 33456777889999997
|
| >1jpd_X L-Ala-D/L-Glu epimerase; enolase superfamily, muconate lactonizing enzyme subgroup, alpha/beta barrel, structural genomics, isomerase; 2.60A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-59 Score=461.65 Aligned_cols=319 Identities=24% Similarity=0.324 Sum_probs=267.1
Q ss_pred eEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhc-CCCCCCH
Q 014285 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLR-QSPPTTL 144 (427)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~-g~~~~~~ 144 (427)
+|++++++++++|++.||.++.++.+.++.++|+|+ ++|++||||+.+.+.++.+.......++.++|.+. |.+ +
T Consensus 3 ~i~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~-d~G~~G~GE~~~~~~~g~~~~~~~~~i~~~~~~l~~~~~---~ 78 (324)
T 1jpd_X 3 HMRTVKVFEEAWPLHTPFVIARGSRSEARVVVVELE-EEGIKGTGECTPYPRYGESDASVMAQIMSVVPQLEKGLT---R 78 (324)
T ss_dssp SCCEEEEEEEEEEBSCC------CCSEEEEEEEEEE-ETTEEEEEEECCCGGGTCCHHHHHHHHHTTHHHHHTTCC---H
T ss_pred ceEEEEEEEEEecccccEEecCeeEEEeeEEEEEEE-eCCceEEEEeeCCCCcCCCHHHHHHHHHHHHHHHhcCCC---H
Confidence 477999999999999999999998889999999999 68999999999887654332223333455777774 543 4
Q ss_pred HHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCcee-eeeeecCCCHHHHHHHHHHHhhcCCcEE
Q 014285 145 NFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLS-TAITIPAVSPAEASELASKYCKLGFSTL 223 (427)
Q Consensus 145 ~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip-~~~~i~~~~~~~~~~~~~~~~~~Gf~~i 223 (427)
+.+++ + .+ .+++++|||+||||+.||..|+|||+||||..++.+ ..++++..+++++.+++++++++||+++
T Consensus 79 ~~~~~-~---~~---~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~G~~~~ 151 (324)
T 1jpd_X 79 EELQK-I---LP---AGAARNALDCALWDLAARRQQQSLADLIGITLPETVITAQTVVIGTPDQMANSASTLWQAGAKLL 151 (324)
T ss_dssp HHHHH-H---SC---SSHHHHHHHHHHHHHHHHTTTCCHHHHHTCCCCSEEEBCEEECSCCHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHH-h---Cc---cHHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCCCcceeEEeeCCCHHHHHHHHHHHHHcCCCEE
Confidence 44432 2 22 257899999999999999999999999999754333 2344566789999999999999999999
Q ss_pred EEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhcccc
Q 014285 224 KLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTY 303 (427)
Q Consensus 224 KlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~ 303 (427)
|+|+|. ++|++++++||+..|++.|+||||++|++++|+++++.|+++++ .|||||++++|+++++++ ++
T Consensus 152 KiKvg~--~~d~~~v~avr~~~~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l------~~ 221 (324)
T 1jpd_X 152 KVKLDN--HLISERMVAIRTAVPDATLIVDANESWRAEGLAARCQLLADLGV--AMLEQPLPAQDDAALENF------IH 221 (324)
T ss_dssp EEECCS--SCHHHHHHHHHHHCTTSEEEEECTTCCCSTTHHHHHHHHHHTTC--CEEECCSCTTSCGGGGSS------CC
T ss_pred EEEeCC--chHHHHHHHHHHhCCCCEEEEECcCCCCHHHHHHHHHHHHhCCC--CEEECCCCCCCHHHHHhc------cC
Confidence 999997 57899999999977999999999999999999999999999997 499999999999999877 36
Q ss_pred CCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCc
Q 014285 304 GISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCI 382 (427)
Q Consensus 304 ~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~ 382 (427)
++||++||++.+..+++++++. +|++|+|++++| ++++++++++|+++|+++++|+++||+|+++|++|+++.+
T Consensus 222 ~ipIa~dE~~~~~~~~~~~~~~--~~~i~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~~la~~~--- 296 (324)
T 1jpd_X 222 PLPICADESCHTRSNLKALKGR--YEMVNIKLDKTGGLTEALALATEARAQGFSLMLGCMLCTSRAISAALPLVPQV--- 296 (324)
T ss_dssp SSCEEESTTCSSGGGHHHHBTT--BSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCSCCHHHHHHHGGGGGGC---
T ss_pred CCCEEEcCCCCCHHHHHHHHhh--CCEEEEcchhhCcHHHHHHHHHHHHHcCCcEEEeCcchHHHHHHHHHHHhhcC---
Confidence 8999999999999999999854 899999999997 9999999999999999999999999999999999998765
Q ss_pred ceeccCCCcccccCCCCCceeeeCcEEec
Q 014285 383 KYVNLNTPFLLSEDPFVGGCEVSGAIYNF 411 (427)
Q Consensus 383 ~~~e~~~p~~~~~~~~~~~~~~~~G~i~~ 411 (427)
.+.++++|+++.+|++ +++.++||++.+
T Consensus 297 ~~~~l~~~~~~~~d~~-~~~~~~~G~i~~ 324 (324)
T 1jpd_X 297 SFADLDGPTWLAVDVE-PALQFTTGELHL 324 (324)
T ss_dssp SEECCCGGGGBSSCCS-SCCEEETTEEEC
T ss_pred CccCCCchhhhhccCC-CCcEEECCEEeC
Confidence 4678888877778876 678899998864
|
| >2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-58 Score=470.46 Aligned_cols=347 Identities=17% Similarity=0.221 Sum_probs=281.7
Q ss_pred eeEEEEEEEEEEeeccccccccce--eEEeeeEEEEEEEEcC--CceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLS--SVENVENVAIRVELSN--GCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSP 140 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~--~~~~~~~vlV~v~t~~--G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~ 140 (427)
|||++|+++.+++|++.|+..+.+ +.+.++.++|+|+|++ |++||||+.+.+. +.+ .....++.+.|.|+|++
T Consensus 2 mkI~~i~~~~~~~p~~~p~~~~~~~~~~~~~~~~~V~v~td~~~G~~G~Ge~~~~g~-~~~--~v~~~i~~l~~~liG~d 78 (441)
T 2hxt_A 2 RTIIALETHDVRFPTSRELDGSDAMNPDPDYSAAYVVLRTDGAEDLAGYGLVFTIGR-GND--VQTAAVAALAEHVVGLS 78 (441)
T ss_dssp CBEEEEEEEEEECCGGGTTTTCCSSCSSCCCEEEEEEEEESSCTTCEEEEEEEECST-THH--HHHHHHHTTHHHHTTCB
T ss_pred CcEEEEEEEEEEecCCCCcCcccccccCCCcceEEEEEEECCCCCCEEEEeecCCCC-CcH--HHHHHHHHHHHHHcCCC
Confidence 799999999999999999876543 2234568999999998 9999999986432 222 12223456889999999
Q ss_pred CCCHHH----HHHHHHHH----CCC---ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCC------------------
Q 014285 141 PTTLNF----ALDEIARI----LPG---SEFASVRAGVEMALIDAVANSIDIPLWRLFGGAS------------------ 191 (427)
Q Consensus 141 ~~~~~~----~~~~l~~~----~~g---~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~------------------ 191 (427)
+.+++. +|+.|... ..+ ...+++++|||+||||++||..|+|||+||||..
T Consensus 79 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~A~said~AlwDl~gk~~g~Pl~~lLGG~~~~~~~~~~~~~~~~d~~~ 158 (441)
T 2hxt_A 79 VDKVIADLGAFARRLTNDSQLRWLGPEKGVMHMAIGAVINAAWDLAARAANKPLWRFIAELTPEQLVDTIDFRYLSDALT 158 (441)
T ss_dssp HHHHHHCHHHHHHHHHTCHHHHHTCSSSHHHHHHHHHHHHHHHHHHHHHTTSBHHHHHHTSCHHHHHHHCCCTTCTTTCC
T ss_pred hHHHHhhHHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHcCCcHHHHhcCCCcccccccccccccccccc
Confidence 887754 56666431 112 1235789999999999999999999999999853
Q ss_pred ------------------------Cceeeeeee--cC-CCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHH-
Q 014285 192 ------------------------NSLSTAITI--PA-VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHA- 243 (427)
Q Consensus 192 ------------------------~~ip~~~~i--~~-~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~- 243 (427)
+.+|.|.+. +. .+++++.+.+++++++||++||+|+|.+++.|++++++||+
T Consensus 159 ~~~~~~~~~~~~~~~~~r~~~~~~~~vp~y~~~~g~~~~~~e~~~~~a~~~~~~Gf~~vKik~g~~~~~d~e~v~avR~a 238 (441)
T 2hxt_A 159 RDEALAILRDAQPQRAARTATLIEQGYPAYTTSPGWLGYSDEKLVRLAKEAVADGFRTIKLKVGANVQDDIRRCRLARAA 238 (441)
T ss_dssp HHHHHHHHHHHGGGHHHHHHHHHHHCEEEEEEEEECTTSCHHHHHHHHHHHHHTTCSEEEEECCSCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcccccchhhhhhcccCCcceeEecccccCCCHHHHHHHHHHHHHcCCCEEEEccCCCHHHHHHHHHHHHHh
Confidence 257777642 22 37899999999999999999999999989999999999999
Q ss_pred hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhcccc-CCeEEecCCCCCHHHHHHH
Q 014285 244 VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTY-GISVVADESCRSLNDVQKV 322 (427)
Q Consensus 244 ~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~-~iPIa~dE~~~~~~~~~~l 322 (427)
.++++.|+||+|++|++++|+++++.|+++++ .|||||++++|++++++|++ ++ ++||++||++.+..+++++
T Consensus 239 ~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~~----~~~~iPIa~dE~~~~~~~~~~~ 312 (441)
T 2hxt_A 239 IGPDIAMAVDANQRWDVGPAIDWMRQLAEFDI--AWIEEPTSPDDVLGHAAIRQ----GITPVPVSTGEHTQNRVVFKQL 312 (441)
T ss_dssp HCSSSEEEEECTTCCCHHHHHHHHHTTGGGCC--SCEECCSCTTCHHHHHHHHH----HHTTSCEEECTTCCSHHHHHHH
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHHHhcCC--CeeeCCCCHHHHHHHHHHHh----hCCCCCEEEeCCcCCHHHHHHH
Confidence 68999999999999999999999999999997 49999999999999999986 45 6999999999999999999
Q ss_pred HHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHH-HHHh-----hcCCc--ceeccCCCccc
Q 014285 323 MQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFAL-HLAA-----GLGCI--KYVNLNTPFLL 393 (427)
Q Consensus 323 l~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~-hlaa-----al~~~--~~~e~~~p~~~ 393 (427)
++.+++|++++|++++| ++++++++++|+++|+++++|+ +++++++++ |++. ..++. .++|+...
T Consensus 313 i~~~~~d~v~ik~~~~GGite~~~ia~~A~~~g~~~~~h~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~e~~~~--- 386 (441)
T 2hxt_A 313 LQAGAVDLIQIDAARVGGVNENLAILLLAAKFGVRVFPHA---GGVGLCELVQHLAMADFVAITGKMEDRAIEFVDH--- 386 (441)
T ss_dssp HHHTCCSEECCCTTTSSHHHHHHHHHHHHHHTTCEECCCC---CSTTHHHHHHHHHHHHHHHTTCCCTTCCEEECCS---
T ss_pred HHcCCCCEEEeCcceeCCHHHHHHHHHHHHHcCCeEEEec---ChHHHHHHHHHHHhcchhhccccccCcceeechh---
Confidence 99999999999999998 9999999999999999999885 344544433 4432 22322 23443221
Q ss_pred ccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 394 SEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 394 ~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
..+.+.+++.++||++.+|++||||+++|++.+
T Consensus 387 ~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~l 419 (441)
T 2hxt_A 387 LHQHFLDPVRIQHGRYLAPEVPGFSAEMHPASI 419 (441)
T ss_dssp SGGGBSSCCCEETTEECCCCSSBCSCCBCHHHH
T ss_pred hhhhccCCccccCCeEECCCCCCCCcccCHHHH
Confidence 123456678899999999999999999998865
|
| >2p3z_A L-rhamnonate dehydratase; enolase, structural genomics, PSI, protein structure initiat YORK structural genomics research consortium; 1.80A {Salmonella typhimurium LT2} PDB: 3box_A 3cxo_A* 2gsh_A 3d47_A 3d46_A 2i5q_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-56 Score=453.95 Aligned_cols=307 Identities=14% Similarity=0.202 Sum_probs=258.4
Q ss_pred EeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHH-HHHhhHhcCCCCCCHHHHHHHHHHHCC---C--ChhhhHH
Q 014285 91 ENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKV-REACQFLRQSPPTTLNFALDEIARILP---G--SEFASVR 164 (427)
Q Consensus 91 ~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~-~~~~~~l~g~~~~~~~~~~~~l~~~~~---g--~~~~~a~ 164 (427)
+.++.++|+|+|++|++||||+.+ ++. ....+ +.+.|.|+|+++.+++.+|+.|.+... + ...++++
T Consensus 67 ~~~~~v~V~v~td~G~~G~GE~~~-----g~~--~~~~v~~~l~p~LiG~d~~~~~~i~~~m~~~~~~~~g~~~~~~~A~ 139 (415)
T 2p3z_A 67 NVLGTLIVEVEAENRQTGFAVSTA-----GEM--GCFIVEKHLNRFIEGKCVSDIKLIHDQMLGATMYYSGSGGLVMNTI 139 (415)
T ss_dssp TSSCEEEEEEEETTSCEEEEEEEC-----HHH--HHHHHHHTTHHHHTTSBTTCHHHHHHHHHHHHTTTSTTSSHHHHHH
T ss_pred ccceEEEEEEEECCCCEEEEEecC-----CHH--HHHHHHHHHHHHHCCCChhhHHHHHHHHHHhhhcccCCCcchHHHH
Confidence 367899999999999999999963 221 11223 348899999999999999999976421 2 2346899
Q ss_pred HHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC-------CchhhHH
Q 014285 165 AGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-------NITADFD 236 (427)
Q Consensus 165 ~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~-------~~~~d~~ 236 (427)
+||||||||++||..|+|||+||||. ++++|+|.+. .++++ .+++||+++|+|+|. ++++|++
T Consensus 140 said~ALwDl~ak~~g~Pl~~lLGG~~~~~vp~y~~g--~~~~~-------~~~~G~~~~KiK~g~g~~~G~~~~~~d~~ 210 (415)
T 2p3z_A 140 SCVDLALWDLFGKVVGLPVYKLLGGAVRDEIQFYATG--ARPDL-------AKEMGFIGGKMPTHWGPHDGDAGIRKDAA 210 (415)
T ss_dssp HHHHHHHHHHHHHHHTCBHHHHTTCCSSSEEEEEEES--SCHHH-------HHHHTCSEEEEECCCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHcCCCCCCceeeeecC--CCHHH-------HHHhCcceEEEecccCcccccccHHHHHH
Confidence 99999999999999999999999996 7789998763 24532 246799999999963 4578999
Q ss_pred HHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccC--CeEEecCCC
Q 014285 237 VLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG--ISVVADESC 313 (427)
Q Consensus 237 ~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~--iPIa~dE~~ 313 (427)
++++||+ .++++.|+||||++|++++|+++++.|+++++ .|||||++++|++++++|++ +++ +||++||++
T Consensus 211 ~v~avrea~G~~~~L~vDaN~~~~~~~Ai~~~~~l~~~~i--~~iEqPl~~~d~~~~~~l~~----~~~~~ipIa~dE~~ 284 (415)
T 2p3z_A 211 MVADMREKCGPDFWLMLDCWMSQDVNYATKLAHACAPFNL--KWIEECLPPQQYEGYRELKR----NAPAGMMVTSGEHH 284 (415)
T ss_dssp HHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGTC--CEEECCSCTTCHHHHHHHHH----HSCTTCEEEECTTC
T ss_pred HHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCC--ceEeCCCCcchHHHHHHHHH----hcCCCCcEEcCCCC
Confidence 9999999 58999999999999999999999999999987 49999999999999999986 466 999999999
Q ss_pred CCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcceeccCCC--
Q 014285 314 RSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTP-- 390 (427)
Q Consensus 314 ~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~~~p-- 390 (427)
.+..+++++++.+ +|++|+|++++| ++++++++++|+++|+++++|+. + .+++|++++++|+.+.|+...
T Consensus 285 ~~~~~~~~~i~~~-~d~i~ik~~~~GGitea~~ia~lA~~~gi~v~~h~~---~---~a~~hlaaa~p~~~~~e~~~~~~ 357 (415)
T 2p3z_A 285 GTLQSFRTLAETG-IDIMQPDVGWCGGLTTLVEIAALAKSRGQLVVPHGS---S---VYSHHAVITFTNTPFSEFLMTSP 357 (415)
T ss_dssp CSHHHHHHHHHTT-CSEECCCHHHHTCHHHHHHHHHHHHHTTCCBCCCCC---H---HHHHHHHTTCTTCCCEEEECCST
T ss_pred CCHHHHHHHHHcC-CCEEEeCccccCCHHHHHHHHHHHHHcCCEEEecCh---H---HHHHHHHHhCCCCcccccccccc
Confidence 9999999999999 999999999997 99999999999999999999874 1 368999999999888775321
Q ss_pred -----cccccCCCCCceeeeCcEEecC--CCCCcccccCCCcC
Q 014285 391 -----FLLSEDPFVGGCEVSGAIYNFT--NARGQGGFLKWTIV 426 (427)
Q Consensus 391 -----~~~~~~~~~~~~~~~~G~i~~p--~~pGlGve~d~~~v 426 (427)
..+..+.+..++.++||++.+| ++||||+++|++++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~G~l~~p~P~~PGLGveld~~~~ 400 (415)
T 2p3z_A 358 DCSTLRPQFDPILLDEPVPVNGRIHKSVLDKPGFGVELNRDCH 400 (415)
T ss_dssp TSSSCCCTTTTTEETCCCCBTTEEEGGGGCSSBTSCEECTTSC
T ss_pred ccccccchhhhhccCCCeeECCEEECCCCCCCCcceeECHHHH
Confidence 1122334434455789999998 99999999999874
|
| >1r6w_A OSB synthase, O-succinylbenzoate synthase, OSBS; enolase superfamily, TIM barrel, capping alpha+beta domain, lyase; HET: 164; 1.62A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 PDB: 1fhv_A* 1fhu_A 2ofj_A 3gc2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-55 Score=433.57 Aligned_cols=298 Identities=20% Similarity=0.216 Sum_probs=259.0
Q ss_pred eEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHH-HHHHHHH-HhhHhcCCCCCC
Q 014285 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTK-ALVKVRE-ACQFLRQSPPTT 143 (427)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~-~~~~~~~-~~~~l~g~~~~~ 143 (427)
+|++++++++++|+++||.++.++++.++.++|+|+|+ |++||||+.+.++|+++..+ ....+++ +.+.+.|+ .+
T Consensus 2 ~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~i~td-G~~G~GE~~~~~~~~~e~~~~~~~~l~~~~~~~l~g~--~~ 78 (322)
T 1r6w_A 2 HMRSAQVYRWQIPMDAGVVLRDRRLKTRDGLYVCLREG-EREGWGEISPLPGFSQETWEEAQSVLLAWVNNWLAGD--CE 78 (322)
T ss_dssp CCEEEEEEEEEEEBCTTCBC-CCBCCEEEEEEEEEEET-TEEEEEEECCCTTTCSSCHHHHHHHHHHHHHHHTTSC--CC
T ss_pred cceEEEEEEEEEeccCCeEeccEEEEeeeEEEEEEEEC-CeEEEEEecCCCCCCccCHHHHHHHHHHHHHHhhCCh--hh
Confidence 58899999999999999999999999999999999996 99999999998877765433 3333443 67888887 22
Q ss_pred HHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecCCCHHHHHHHHHHHhhcCCcEE
Q 014285 144 LNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTL 223 (427)
Q Consensus 144 ~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~i 223 (427)
+ .+ .+++++||||||||++||..|+|+| +.+|+| ..+++++.++++++ +||+++
T Consensus 79 l-----------~~--~~~a~~aid~ALwDl~gk~~g~p~~-------~~v~~~----~~~~~~~~~~a~~~--~G~~~~ 132 (322)
T 1r6w_A 79 L-----------PQ--MPSVAFGVSCALAELTDTLPQAANY-------RAAPLC----NGDPDDLILKLADM--PGEKVA 132 (322)
T ss_dssp C-----------CS--SHHHHHHHHHHHHHHTTCSCCCSCC-------CCCCEE----CSCHHHHHHHHHTC--CSSEEE
T ss_pred c-----------cc--ChHHHHHHHHHHHHhcCCCCCCCcc-------ceEEEe----CCCHHHHHHHHHHh--CCCceE
Confidence 1 22 4689999999999999999999886 346665 45788887777664 799999
Q ss_pred EEeccC-CchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhC---CCCCceEeCCCCCCChhhHHHHHHhh
Q 014285 224 KLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDM---GVIPVLFEQPVHRDDWSGLHDVSNFA 299 (427)
Q Consensus 224 KlKiG~-~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~---~l~~~~iEqP~~~~d~~~~~~L~~~~ 299 (427)
|+|+|. ++++|++++++||+..|++.||||||++|++++|+++++.|+++ ++ .|||||++ +++++++|++
T Consensus 133 KiKvG~~~~~~d~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~~i--~~iEqP~~--~~~~~~~l~~-- 206 (322)
T 1r6w_A 133 KVRVGLYEAVRDGMVVNLLLEAIPDLHLRLDANRAWTPLKGQQFAKYVNPDYRDRI--AFLEEPCK--TRDDSRAFAR-- 206 (322)
T ss_dssp EEECSSSCHHHHHHHHHHHHHHCTTEEEEEECTTCBCHHHHHHHHHTSCTTTGGGE--EEEECCBS--SHHHHHHHHH--
T ss_pred EEEeCCCCHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHhhhhccCCe--eEEECCCC--ChHHHHHHHH--
Confidence 999997 88999999999999778999999999999999999999999998 76 59999997 4889999986
Q ss_pred ccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhh
Q 014285 300 RDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAG 378 (427)
Q Consensus 300 r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaa 378 (427)
++++||++||++.+ .++ ++++.+++|++|+|++++| ++++++++++|+++|+++++|+++||+||+++++|++++
T Consensus 207 --~~~ipIa~dE~~~~-~~~-~~~~~~a~d~i~ik~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~ig~aa~~hlaa~ 282 (322)
T 1r6w_A 207 --ETGIAIAWDESLRE-PDF-AFVAEEGVRAVVIKPTLTGSLEKVREQVQAAHALGLTAVISSSIESSLGLTQLARIAAW 282 (322)
T ss_dssp --HHCCCEEESGGGGS-TTC-CCCCCTTEEEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEBCSSCCHHHHHHHHHHHHH
T ss_pred --hCCCCEEeCCCCCC-hhH-hhhhcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCcEEEECccccHHHHHHHHHHHHh
Confidence 68999999999999 456 6668889999999999997 999999999999999999999999999999999999999
Q ss_pred cCCcceeccCCCcccccCCCCCce
Q 014285 379 LGCIKYVNLNTPFLLSEDPFVGGC 402 (427)
Q Consensus 379 l~~~~~~e~~~p~~~~~~~~~~~~ 402 (427)
+++..+.+++++.++.+|++.+++
T Consensus 283 ~~~~~~~~l~t~~~~~~d~~~~~~ 306 (322)
T 1r6w_A 283 LTPDTIPGLDTLDLMQAQQVRRWP 306 (322)
T ss_dssp HCTTSCCBCTTGGGBSCEESSCCT
T ss_pred cCCCCccCCCchhhhhhccccCCc
Confidence 988888899998888888776655
|
| >1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel; 1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1 PDB: 1kkr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-55 Score=446.47 Aligned_cols=307 Identities=17% Similarity=0.185 Sum_probs=258.6
Q ss_pred eeEEeeeEEEEEEEEcCCceEEEEeecC---------CCCCcchHHHHHHHHH-HhhHhcCCCCCCHHHHHHHHHHHCC-
Q 014285 88 SSVENVENVAIRVELSNGCVGWGEVAVV---------PLVTGDQTKALVKVRE-ACQFLRQSPPTTLNFALDEIARILP- 156 (427)
Q Consensus 88 ~~~~~~~~vlV~v~t~~G~~G~GE~~~~---------~~~s~~~~~~~~~~~~-~~~~l~g~~~~~~~~~~~~l~~~~~- 156 (427)
++.+.++.++|+|+|++|++|||||.+. |.|+++ .....+++ +.|.|+|+++.+++.+|+.|.....
T Consensus 45 ~~~~~~~~v~V~v~td~G~~G~GE~~~~~~sGa~~r~~~~~~~--~~~~~i~~~l~p~LiG~d~~~~~~i~~~l~~~~~~ 122 (413)
T 1kko_A 45 SVRQAGECVSVQLILENGAVAVGDCAAVQYSGAGGRDPLFLAE--HFIPFLNDHIKPLLEGRDVDAFLPNARFFDKLRID 122 (413)
T ss_dssp SSEEEEEEEEEEEEETTSCEEEEEECCCTTTTSTTCCCCCCHH--HHHHHHHHHTHHHHTTCBCSCSHHHHHHHHHCEET
T ss_pred eEEEecceEEEEEEECCCCEEEEEecccccccccccCccccHH--HHHHHHHHHHHHHHcCCChHhHHHHHHHHHhhhcc
Confidence 4567789999999999999999999876 444442 22333444 8899999999999999999976421
Q ss_pred CC-hhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC------CCceeeeeeecC---CCHHHHHHHHHHHhhcC-CcEEEE
Q 014285 157 GS-EFASVRAGVEMALIDAVANSIDIPLWRLFGGA------SNSLSTAITIPA---VSPAEASELASKYCKLG-FSTLKL 225 (427)
Q Consensus 157 g~-~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~------~~~ip~~~~i~~---~~~~~~~~~~~~~~~~G-f~~iKl 225 (427)
+. ..+++++||||||||+.||..|+|||+||||. +++||+|.+.+. .+++++.+++++++++| |++||+
T Consensus 123 ~~~~~~~A~~aid~AlwDl~ak~~g~Pl~~lLGg~~~~~l~~~~vp~y~~~g~~~~~~~~~~~~~~~~~~~~G~~~~iK~ 202 (413)
T 1kko_A 123 GNLLHTAVRYGLSQALLDATALASGRLKTEVVCDEWQLPCVPEAIPLFGQSGDDRYIAVDKMILKGVDVLPHALINNVEE 202 (413)
T ss_dssp TEECCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHTTCCCCCCCCCEECCCTTCTTHHHHHHHHTTCSEEEETTCCCCCC
T ss_pred cCccHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCccccccccCCeEEEEecCccccCCHHHHHHHHHHHHhCCCccEEEE
Confidence 21 23689999999999999999999999999984 568898876332 36777877777888899 999999
Q ss_pred eccCCchhh-------HHHHHHHHH-hCCCcEEEEeCCC------CCCHHHHHHHHHHhhhCCCCCc-eEeCCCC----C
Q 014285 226 NVGRNITAD-------FDVLQAIHA-VHPHCSFILDANE------GYTSEEAVEVLGKLNDMGVIPV-LFEQPVH----R 286 (427)
Q Consensus 226 KiG~~~~~d-------~~~l~~ir~-~~~~~~L~vDAN~------~~s~~~A~~~l~~L~~~~l~~~-~iEqP~~----~ 286 (427)
|+|.+.++| ++++++||+ .++++.|+||||+ +|++++|++++++|+++++.+. |||||++ +
T Consensus 203 KvG~~~~~~~~~l~~d~~~v~aiR~~~G~~~~L~vDan~~~~~~~~~~~~~A~~~~~~L~~~~~~~~l~iEqP~~~~~~~ 282 (413)
T 1kko_A 203 KLGFKGEKLREYVRWLSDRILSLRSSPRYHPTLHIDVYGTIGLIFDMDPVRCAEYIASLEKEAQGLPLYIEGPVDAGNKP 282 (413)
T ss_dssp CCCTTSHHHHHHHHHHHHHHHHHCSSTTCCCEEEEECTTHHHHHTTTCHHHHHHHHHHTGGGGTTSCEEEECCCCCSSHH
T ss_pred ecCCChhhHHHHHHHHHHHHHHHHHhhCCCCeEEEECCCccccccCCCHHHHHHHHHHHHhccCCcceEEECCcCCCCCc
Confidence 999865554 489999998 5789999999999 9999999999999999654322 9999999 6
Q ss_pred CChhhHHHHHHhhcc-ccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccC-
Q 014285 287 DDWSGLHDVSNFARD-TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMI- 363 (427)
Q Consensus 287 ~d~~~~~~L~~~~r~-~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~- 363 (427)
+|+++|++|++.+.+ .+++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.
T Consensus 283 ~d~~~~~~l~~~l~~~g~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~ik~~~~GGitea~~i~~~A~~~gi~~~~~~~~~ 362 (413)
T 1kko_A 283 DQIRMLTAITKELTRLGSGVKIVADEWCNTYQDIVDFTDAGSCHMVQIKTPDLGGIHNIVDAVLYCNKHGMEAYQGGTCN 362 (413)
T ss_dssp HHHHHHHHHHHHHHHHTCCCEEEECTTCCSHHHHHHHHHTTCCSEEEECGGGGSSTHHHHHHHHHHHHHTCEEEECCCTT
T ss_pred ccHHHHHHHHHhcccCCCCCcEEcCCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEecCCCC
Confidence 799999999862100 07899999999999999999999999999999999997 999999999999999999999996
Q ss_pred chhHHHHHHHHHHhhcCCcceeccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCC
Q 014285 364 ETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKW 423 (427)
Q Consensus 364 es~ig~~a~~hlaaal~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~ 423 (427)
||++++++++|+++++++ ..+|++||+|++.++
T Consensus 363 et~i~~aa~~hlaaa~~~---------------------------~~ip~kpG~g~~~~~ 395 (413)
T 1kko_A 363 ETEISARTCVHVALAARP---------------------------MRMLIKPGMGFDEGL 395 (413)
T ss_dssp SCHHHHHHHHHHHHHHCC---------------------------SEEECCSCSSSHHHH
T ss_pred CCHHHHHHHHHHHHcCCC---------------------------CcccCCCCCCCCccH
Confidence 999999999999998742 346788999998764
|
| >1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A {Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB: 1kd0_A* 3zvi_A 3zvh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-54 Score=439.38 Aligned_cols=302 Identities=16% Similarity=0.227 Sum_probs=259.9
Q ss_pred cccccccceeE-EeeeEEEEEEEEcCCceEEEEeecCCC--CCc----ch-HHHHHHHHH-HhhHhcCCCCCCHHHHHHH
Q 014285 80 SAPLSLGLSSV-ENVENVAIRVELSNGCVGWGEVAVVPL--VTG----DQ-TKALVKVRE-ACQFLRQSPPTTLNFALDE 150 (427)
Q Consensus 80 ~~p~~~a~~~~-~~~~~vlV~v~t~~G~~G~GE~~~~~~--~s~----~~-~~~~~~~~~-~~~~l~g~~~~~~~~~~~~ 150 (427)
..||+++.+++ +.++.++|+|+|++|++|||||.+.+. +++ +. ......+++ ++|.|+|+++.+++.+|+.
T Consensus 36 ~~P~~~~~~~~~~~~~~v~V~v~td~G~~G~GE~~~~~~~g~g~~e~~~~~~~~~~~i~~~l~p~L~G~d~~~~~~i~~~ 115 (413)
T 1kcz_A 36 GSTVTEGFTQVRQKGESISVLLVLEDGQVAHGDCAAVQYSGAGGRDPLFLAKDFIPVIEKEIAPKLIGREITNFKPMAEE 115 (413)
T ss_dssp SCCCSTTCSSSEEECCEEEEEEEETTSCEEEEEECCCTTTTSTTSCSCCCHHHHHHHHHHHTHHHHTTCBCCCHHHHHHH
T ss_pred CCCEEcccceEeecCcEEEEEEEECCCCEEEEEEccccccccCcccccccHHHHHHHHHHHHHHHHcCCChhhHHHHHHH
Confidence 57999998887 889999999999999999999997653 221 11 123344554 8999999999999999999
Q ss_pred HHHHC-CC-ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCC------CCCceeeeeeecC---CCHHHHHHHHHHHhhcC
Q 014285 151 IARIL-PG-SEFASVRAGVEMALIDAVANSIDIPLWRLFGG------ASNSLSTAITIPA---VSPAEASELASKYCKLG 219 (427)
Q Consensus 151 l~~~~-~g-~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg------~~~~ip~~~~i~~---~~~~~~~~~~~~~~~~G 219 (427)
|.... .| ...+++++||||||||+.||..|+|||+|||| .++++|+|.+.+. .+++++.+++++++++|
T Consensus 116 l~~~~~~g~~~~~~a~~aid~AlwDl~ak~~g~Pl~~lLGg~~~~~~~~~~vp~~~~~g~~~~~~~~~~~~~a~~~~~~G 195 (413)
T 1kcz_A 116 FDKMTVNGNRLHTAIRYGITQAILDAVAKTRKVTMAEVIRDEYNPGAEINAVPVFAQSGDDRYDNVDKMIIKEADVLPHA 195 (413)
T ss_dssp HHHCEETTEECCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHSTTCCCCCCCEECCCTTCTTHHHHHHHHTTCSEEEEC
T ss_pred HHhcccCCcchHHHHHHHHHHHHHHHHHHHhCCcHHHHhcccccCcCccCCeeeeEecCccccCCHHHHHHHHHHHHHhc
Confidence 95432 22 12468999999999999999999999999997 4678999886542 35778888888888899
Q ss_pred -CcEEEEeccCC---chh----hHHHHHHHHH-hCCCcEEEEeCCCC------CCHHHHHHHHHHhhhC--CCCCceEeC
Q 014285 220 -FSTLKLNVGRN---ITA----DFDVLQAIHA-VHPHCSFILDANEG------YTSEEAVEVLGKLNDM--GVIPVLFEQ 282 (427)
Q Consensus 220 -f~~iKlKiG~~---~~~----d~~~l~~ir~-~~~~~~L~vDAN~~------~s~~~A~~~l~~L~~~--~l~~~~iEq 282 (427)
|+++|+|+|.+ ..+ |++++++||+ .++++.|+||||++ |++++|+++++.|+++ ++. .||||
T Consensus 196 ~~~~~KiKvG~~~~~~~~~~~~d~~~v~avR~~~G~~~~l~vDaN~~~~~~~~~~~~~a~~~~~~L~~~~~~i~-~~iEq 274 (413)
T 1kcz_A 196 LINNVEEKLGLKGEKLLEYVKWLRDRIIKLRVREDYAPIFHIDVYGTIGAAFDVDIKAMADYIQTLAEAAKPFH-LRIEG 274 (413)
T ss_dssp CCCCCCCCCCTTSHHHHHHHHHHHHHHHHHCSSTTCCCEEEEECTTHHHHHTTTCHHHHHHHHHHHHHHHTTSC-EEEEC
T ss_pred chhheeeccCCCccchhhHHHHHHHHHHHHHHhcCCCceEEEecCCCcccccCCCHHHHHHHHHHHHhhcCCcc-eEEec
Confidence 99999999975 344 8999999998 57899999999999 9999999999999998 552 49999
Q ss_pred CCCC----CChhhHHHHHHhhccc-----cCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHH
Q 014285 283 PVHR----DDWSGLHDVSNFARDT-----YGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRK 352 (427)
Q Consensus 283 P~~~----~d~~~~~~L~~~~r~~-----~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~ 352 (427)
|++. +|+++|++|++ + +++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|++
T Consensus 275 P~~~~~~~~d~~~~~~l~~----~l~~~g~~ipIa~dE~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~i~~~A~~ 350 (413)
T 1kcz_A 275 PMDVEDRQKQMEAMRDLRA----ELDGRGVDAELVADEWCNTVEDVKFFTDNKAGHMVQIKTPDLGGVNNIADAIMYCKA 350 (413)
T ss_dssp SBCCSSHHHHHHHHHHHHH----HHHHHTCCEEEEECTTCCSHHHHHHHHHTTCSSEEEECTGGGSSTHHHHHHHHHHHH
T ss_pred CCCCCCCcccHHHHHHHHH----hhhcCCCCCcEEeCCCcCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHH
Confidence 9965 48999999986 5 7899999999999999999999999999999999997 9999999999999
Q ss_pred cCCcEEEcc-cCchhHHHHHHHHHHhhcCCcceec
Q 014285 353 SGLHLMIDG-MIETRLATGFALHLAAGLGCIKYVN 386 (427)
Q Consensus 353 ~gi~~~~~s-~~es~ig~~a~~hlaaal~~~~~~e 386 (427)
+|+++++|+ ++||+++.+|++|++++++++.+.+
T Consensus 351 ~gi~~~~~~~~~es~i~~~a~~hlaaa~~~~~i~~ 385 (413)
T 1kcz_A 351 NGMGAYCGGTCNETNRSAEVTTNIGMACGARQVLA 385 (413)
T ss_dssp TTCEEEECCCTTSCHHHHHHHHHHHHHHTCSEEEC
T ss_pred cCCEEEecCCCCCCHHHHHHHHHHHhcCCCCceee
Confidence 999999988 7899999999999999998876544
|
| >2ozt_A TLR1174 protein; structural genomics, O-succinylbenzoate synthase, PSI, protein structure initiative; 1.42A {Synechococcus elongatus} PDB: 3h7v_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-52 Score=417.55 Aligned_cols=288 Identities=22% Similarity=0.265 Sum_probs=242.2
Q ss_pred EEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHH-HHHHHHHhhHhcCCCCCCHHHH
Q 014285 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKA-LVKVREACQFLRQSPPTTLNFA 147 (427)
Q Consensus 69 ~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~-~~~~~~~~~~l~g~~~~~~~~~ 147 (427)
+++++++++|++.||.++.++++.++.++|+|+|++|++||||+.+.+.++.++.+. +..++.+.+.+ ++.+++.+
T Consensus 4 ~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~l~~~l---~~~~~~~~ 80 (332)
T 2ozt_A 4 RWQWRIYEEPLQEPLTTAQGVWRSRSGIYLRLEDEQGQVGYGEIAPLPGWGSETLNADIALCQQLPGHL---TPEIMATI 80 (332)
T ss_dssp EEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTSCEEEEEECCCTTSSSCCHHHHHHHHHHSCSEE---CHHHHTTS
T ss_pred EEEEEEEEeecCCCcEecCEEEEeeeEEEEEEEECCCCEEEEEecCCCCCCcccHHHHHHHHHHhhccC---CHHHHHHH
Confidence 688999999999999999999999999999999999999999999887777644332 22222333333 33323322
Q ss_pred HHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEec
Q 014285 148 LDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNV 227 (427)
Q Consensus 148 ~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKi 227 (427)
|+ .++++++|||+||| +.|| +|+..++ +.|... +.+++++.+.+++++++||+++|+|+
T Consensus 81 ~~---------~~~~a~~aid~Al~-l~gk---------lgg~~~~-~~y~~~-~~~~e~~~~~a~~~~~~G~~~~KiKv 139 (332)
T 2ozt_A 81 PE---------ALPAAQFGFATAWQ-SVGR---------LPYRVRP-WPICAL-LGSGQAALEQWQQSWQRGQTTFKWKV 139 (332)
T ss_dssp CT---------TCHHHHHHHHHHHH-HTTT---------CSCCCCC-CCBCEE-ECTGGGHHHHHHHHHHTTCCEEEEEC
T ss_pred HH---------HhHHHHHHHHHHHH-Hhcc---------cCCCCCC-cceEEe-cCChHHHHHHHHHHHHcCCcEEEEEe
Confidence 22 22568999999999 8887 3554324 555432 35788899999999999999999999
Q ss_pred cC-CchhhHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhC---CCCCceEeCCCCCCChhhHHHHHHhhccc
Q 014285 228 GR-NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDM---GVIPVLFEQPVHRDDWSGLHDVSNFARDT 302 (427)
Q Consensus 228 G~-~~~~d~~~l~~ir~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~---~l~~~~iEqP~~~~d~~~~~~L~~~~r~~ 302 (427)
|. ++++|++++++||+. ++++.|+||||++|++++|+++++.|+++ ++ .|||||++++|++++++|++ +
T Consensus 140 g~~~~~~d~~~v~avr~~~g~~~~L~vDaN~~~~~~~A~~~~~~l~~~~~~~i--~~iEqP~~~~d~~~~~~l~~----~ 213 (332)
T 2ozt_A 140 GVMSPEEEQAILKALLAALPPGAKLRLDANGSWDRATANRWFAWLDRHGNGKI--EYVEQPLPPDQWQALLSLAQ----T 213 (332)
T ss_dssp SSSCHHHHHHHHHHHHHHSCTTCEEEEECTTCCCHHHHHHHHHHHHHHCCTTE--EEEECCSCTTCHHHHHHHHH----H
T ss_pred CCCChHHHHHHHHHHHHHcCCCCEEEEcccCCCCHHHHHHHHHHHHhhccCCc--ceeECCCCCCCHHHHHHHHH----h
Confidence 97 589999999999995 78999999999999999999999999998 76 59999999999999999986 6
Q ss_pred cCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHc--CCcEEEcccCchhHHHHHHHHHHhhc
Q 014285 303 YGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKS--GLHLMIDGMIETRLATGFALHLAAGL 379 (427)
Q Consensus 303 ~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~--gi~~~~~s~~es~ig~~a~~hlaaal 379 (427)
+++||++||++.+..+++++++.++++++++|++++| ++ +++++|+++ |+++++|+++||+|++++++|+++++
T Consensus 214 ~~ipIa~dEs~~~~~~~~~~~~~~a~~~i~ik~~~~GGi~---~i~~~A~~~~~gi~~~~~~~~es~i~~aa~~hlaa~~ 290 (332)
T 2ozt_A 214 VTTAIALDESVVSAAEVQRWVDRGWPGFFVIKTALFGDPD---SLSLLLRRGLEPQRLVFSSALEGAIARTAIFHLLETW 290 (332)
T ss_dssp CSSCEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHSCHH---HHHHHHHTTCCGGGEEEBCCSCCHHHHHHHHHHHHHH
T ss_pred CCCCEEeCCCCCCHHHHHHHHHhCCCCEEEEChhhhCCHH---HHHHHHHHhCCCCcEEEeCCcchHHHHHHHHHHHHhC
Confidence 8999999999999999999999999999999999997 87 678899999 99999999999999999999999998
Q ss_pred CCcceeccCC
Q 014285 380 GCIKYVNLNT 389 (427)
Q Consensus 380 ~~~~~~e~~~ 389 (427)
+|.....+++
T Consensus 291 ~~~~~~gl~t 300 (332)
T 2ozt_A 291 QPCHALGFGV 300 (332)
T ss_dssp CCCSCBBCCC
T ss_pred CCCcCCcCCc
Confidence 8754445554
|
| >2opj_A O-succinylbenzoate-COA synthase; TIM barrel, structural genomics, protein structure initiative; 1.60A {Thermobifida fusca} PDB: 2qvh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-50 Score=398.04 Aligned_cols=282 Identities=23% Similarity=0.333 Sum_probs=227.5
Q ss_pred EEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCCCHHHHH
Q 014285 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFAL 148 (427)
Q Consensus 69 ~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 148 (427)
+++++.+++||+.||+ .++.++.++|+ |.+|||||+|++.|+.+ .. +
T Consensus 2 ~i~~~~~~~Pl~~pf~----~~~~r~~~lV~-----G~~G~GE~~p~~~~~~~-----~~-------------------~ 48 (327)
T 2opj_A 2 SLTGRAFAIPLRTRFR----GITVREGMLVR-----GAAGWGEFSPFAEYGPR-----EC-------------------A 48 (327)
T ss_dssp CCSEEEEEEEEEEEET----TEEEEEEEEEE-----CSSCEEEECCCTTCCHH-----HH-------------------H
T ss_pred EEEEEEEEEeeccCce----eeeEEEEEEEE-----cCEEEEEecCCCCCCHH-----HH-------------------H
Confidence 4678899999999997 34668888884 99999999998765421 00 0
Q ss_pred HHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCCCceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEecc
Q 014285 149 DEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVG 228 (427)
Q Consensus 149 ~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG 228 (427)
+.+++|||||||| +| |+.++++|+|.+++..+++++.+.++ ++||++||+|+|
T Consensus 49 ------------~~~~aaid~Al~~-------~P-----g~~r~~v~~~~ti~~~~~e~~~~~~~---~~G~~~~KiKvg 101 (327)
T 2opj_A 49 ------------RWWAACYEAAELG-------WP-----APVRDTVPVNATVPAVGPEEAARIVA---SSGCTTAKVKVA 101 (327)
T ss_dssp ------------HHHHHHHHHHHTC-------CC-----CCSCSEEEBCEEECSCCHHHHHHHHH---HHCCSEEEEECC
T ss_pred ------------HHHHHHHHHHHhC-------CC-----cCCCCeeEEeEEeCCCCHHHHHHHHH---HCCCCEEEEEeC
Confidence 1358999999974 46 56688999999999889988765543 589999999998
Q ss_pred C---CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccC
Q 014285 229 R---NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG 304 (427)
Q Consensus 229 ~---~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~ 304 (427)
. ++++|++++++||+ .+|++.||||||++|++++|+++++.|+++++ .|||||++ +++++++|++ +++
T Consensus 102 ~~g~~~~~d~~~v~avR~~~G~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l--~~iEqP~~--~~~~~~~l~~----~~~ 173 (327)
T 2opj_A 102 ERGQSEANDVARVEAVRDALGPRGRVRIDVNGAWDVDTAVRMIRLLDRFEL--EYVEQPCA--TVDELAEVRR----RVS 173 (327)
T ss_dssp C------CHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCE--EEEECCSS--SHHHHHHHHH----HCS
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHhcCC--cEEeCCCC--CHHHHHHHHh----hCC
Confidence 5 57899999999999 57999999999999999999999999999987 59999997 5899999986 689
Q ss_pred CeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcc
Q 014285 305 ISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIK 383 (427)
Q Consensus 305 iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~ 383 (427)
+|||+||++.+..+++++++.+++|++|+|++++| ++++++++ +.+|+++++||++||+||++|++|++++++++.
T Consensus 174 iPIa~dEs~~~~~~~~~~i~~~a~d~i~ik~~~~GGit~~~~ia---~~~gi~~~~~~~~es~ig~aa~~hlaaa~~~~~ 250 (327)
T 2opj_A 174 VPIAADESIRRAEDPLRVRDAEAADVVVLKVQPLGGVRAALRLA---EECGLPVVVSSAVETSVGLAAGVALAAALPELP 250 (327)
T ss_dssp SCEEC-----------CTTTTTCCSBEEECHHHHTSHHHHHHHH---HHTCSCEEEBCCSCCHHHHHHHHHHHHHSSCCS
T ss_pred CCEEcCCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHH---HHcCCcEEEcCCCcCHHHHHHHHHHHHhCCCcc
Confidence 99999999999999999999999999999999997 99999875 456999999999999999999999999999865
Q ss_pred e-eccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 384 Y-VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 384 ~-~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+ .++.....+.++++.+++.++||++.+| |+++|+++|
T Consensus 251 ~~~~l~~~~~~~~d~~~~~~~~~~G~l~vp-----gve~d~~~l 289 (327)
T 2opj_A 251 YACGLATLRLLHADVCDDPLLPVHGVLPVR-----RVDVSEQRL 289 (327)
T ss_dssp SCBBCCGGGGBSCCSBSSCCCCBTTEEECC-----CCCBCHHHH
T ss_pred cccccCchhhhhhhcccCCCeeECCEEECC-----CcccCHHHH
Confidence 4 3554333456788778888999999997 689998765
|
| >2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural GENO NPPSFA; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-48 Score=400.44 Aligned_cols=300 Identities=19% Similarity=0.233 Sum_probs=248.2
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCC---------------CCCcc-hHHHHHH
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVP---------------LVTGD-QTKALVK 128 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~---------------~~s~~-~~~~~~~ 128 (427)
|+|++|+++.+..|. + ++.++|+|+|++|++|||++.... .|.++ .......
T Consensus 9 MkI~~i~~~~v~~s~--------g----~~~v~V~v~td~G~~G~G~~~~~~~tg~~ea~~~~d~~~~~~g~~~~~~~~~ 76 (427)
T 2pa6_A 9 FEIKDIVAREVIDSR--------G----NPTVEVEVITKGNGYGSAIVPSGASTGTHEALELRDKEKRFGGKGVLMAVEN 76 (427)
T ss_dssp GBEEEEEEEEEECTT--------S----CEEEEEEEEETTCCEEEEECCCCCSSCSSSCCCCCCCSSGGGGTCCHHHHHH
T ss_pred CEEEEEEEEEEEcCC--------C----CceEEEEEEECCCCeeeEecccccccCcceeEeecCCccccccccHHHHHHH
Confidence 999999999887542 1 567999999999999999763210 12222 2233444
Q ss_pred HHH-HhhHhcCCCCCCHHHHHHHHHHHC----CCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeee--e
Q 014285 129 VRE-ACQFLRQSPPTTLNFALDEIARIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAIT--I 200 (427)
Q Consensus 129 ~~~-~~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~--i 200 (427)
+++ +.|.|+|+++.+++.+|+.|.+.. .+...+++++||||||||+.||..|+|||+||||. ++++|+|.. +
T Consensus 77 i~~~l~p~LiG~d~~~~~~i~~~l~~~~~~~~~~~~~~~A~~avd~AlwDl~ak~~g~Pl~~lLGg~~~~~vp~~~~~~~ 156 (427)
T 2pa6_A 77 VNSIIRPEILGYDARMQREIDTIMIELDGTPNKSRLGANAILAVSLAVAKAAAATAKIPLYKYLGGFNSYVMPVPMMNVI 156 (427)
T ss_dssp HHHTHHHHHTTCBTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHHCSCCCEECEECEEEE
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCccccchHHHHHHHHHHHHHHHHHHhCCcHHHHhcCccccccccchhccc
Confidence 554 889999999999999999997631 12223579999999999999999999999999997 678888752 1
Q ss_pred ----------cC------CCHHHHHHHHHHHhhcCCcEEEE----eccC-------------CchhhHHHHHHHHH-h--
Q 014285 201 ----------PA------VSPAEASELASKYCKLGFSTLKL----NVGR-------------NITADFDVLQAIHA-V-- 244 (427)
Q Consensus 201 ----------~~------~~~~~~~~~~~~~~~~Gf~~iKl----KiG~-------------~~~~d~~~l~~ir~-~-- 244 (427)
++ .+.+++.+++.++.++||+++|+ |+|. +++.|++++++||+ +
T Consensus 157 ~gg~~~~~~l~~~~~~~~p~~~~~~~~a~~~~~~g~~~lK~~l~~K~G~~~~~vg~~gg~~~~~~~d~~~v~~vreav~~ 236 (427)
T 2pa6_A 157 NGGKHAGNDLDLQEFMIMPVGATSISEAVRMGSEVYHVLKNVILEKYGKNAVNVGDEGGFAPPLKTSREALDLLTESVKK 236 (427)
T ss_dssp ECSTTTSSSCSSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCTTSCCBCTTSCBCCSCCSHHHHHHHHHHHHHH
T ss_pred cccccccCCcCHHHhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcCCcCCCccchHHHHHHHHHHHHH
Confidence 11 12256677888888999999998 7452 36789999999998 5
Q ss_pred -CC--CcEEEEeC-------CCCC-------CHHHHHHHHH-HhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCe
Q 014285 245 -HP--HCSFILDA-------NEGY-------TSEEAVEVLG-KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGIS 306 (427)
Q Consensus 245 -~~--~~~L~vDA-------N~~~-------s~~~A~~~l~-~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iP 306 (427)
++ ++.|+||| |++| ++++|++++. .|++|++ .|||||++++|++++++|++ ++++|
T Consensus 237 ~G~~~~~~L~vDa~as~~~~n~~~~~~n~~~~~~~ai~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~ip 310 (427)
T 2pa6_A 237 AGYEDEVVFALDAAASEFYKDGYYYVEGKKLTREELLDYYKALVDEYPI--VSIEDPFHEEDFEGFAMITK----ELDIQ 310 (427)
T ss_dssp HTCTTTCEEEEECCGGGGEETTEEEETTEEECHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHHHHHH----HSSSE
T ss_pred hCCCCCcEEEEEcchhccccCCceeecCCCCCHHHHHHHHHHHHhhCCC--cEEEcCCChhhHHHHHHHHh----hCCCe
Confidence 77 89999999 6775 8999999975 8999986 59999999999999999986 68999
Q ss_pred EEecCC-CCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccC-chhHHHHHHHHHHhhcCCc
Q 014285 307 VVADES-CRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAAGLGCI 382 (427)
Q Consensus 307 Ia~dE~-~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hlaaal~~~ 382 (427)
|++||+ +.+..+++++++.+++|++|+|++++| ++++++++++|+++|++++++++. ||+++.+|++|++++.++.
T Consensus 311 Ia~dE~~~~~~~~~~~~i~~~a~d~i~ik~~~~GGitea~~ia~lA~~~g~~~~~~h~~~es~i~~aa~l~~a~~~~~~ 389 (427)
T 2pa6_A 311 IVGDDLFVTNVERLRKGIEMKAANALLLKVNQIGTLSEAVDAAQLAFRNGYGVVVSHRSGETEDTTIADLSVALNSGQI 389 (427)
T ss_dssp EEESTTTTTCHHHHHHHHHHTCCSEEEECHHHHCSHHHHHHHHHHHHTTTCEEEEECCSSCCSCCHHHHHHHHTTCSEE
T ss_pred EEeCccccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEEeCCCCCChHHHHHHHHHHhCCCcc
Confidence 999999 556999999999999999999999997 999999999999999999996655 9999999999999988765
|
| >2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-49 Score=401.60 Aligned_cols=298 Identities=22% Similarity=0.274 Sum_probs=249.3
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcc------------------hHHHH
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGD------------------QTKAL 126 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~------------------~~~~~ 126 (427)
|+|++|+.+.+-- +. .++.++|+|+|++|++| ||+.|.+..+++ .....
T Consensus 1 ~~I~~v~~~~v~~--------sr----g~~~v~V~v~td~G~~G-ge~~p~~~~~G~~ea~e~rd~~~~~y~g~~~~~~~ 67 (431)
T 2fym_A 1 SKIVKIIGREIID--------SR----GNPTVEAEVHLEGGFVG-MAAAPSGASTGSREALELRDGDKSRFLGKGVTKAV 67 (431)
T ss_dssp CBEEEEEEEEEEC--------TT----SCEEEEEEEEETTSCEE-EEECCCCCSSCSSSCCCCCCCCTTSGGGTCCHHHH
T ss_pred CeeEEEEEEEEEc--------CC----CCeeEEEEEEECCCCcc-ceecCcccccCcccceeccCCcccccccccHHHHH
Confidence 6899999887531 11 23579999999999999 999876432221 22344
Q ss_pred HHHHH-HhhHhcCCCCCCHHHHHHHHHHHCC----CChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCc----eee
Q 014285 127 VKVRE-ACQFLRQSPPTTLNFALDEIARILP----GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNS----LST 196 (427)
Q Consensus 127 ~~~~~-~~~~l~g~~~~~~~~~~~~l~~~~~----g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~----ip~ 196 (427)
..+++ +.|.|+|+++.+++.+|+.|.+... +...+++++||||||||++||..|+|||+||||. +++ +|+
T Consensus 68 ~~i~~~l~p~LiG~d~~~~~~i~~~l~~~~g~~~~~~~g~~A~~avd~AlwD~~ak~~g~Pl~~lLGG~~~~~~~~~~pv 147 (431)
T 2fym_A 68 AAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPV 147 (431)
T ss_dssp HHHHTHHHHHHTTSBTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHTTCTTCCCCCE
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCcccchhHHHHHHHHHHHHHHHHHHhCCcHHHHhcCcccccccccccc
Confidence 44554 8899999999999999999976311 1223478999999999999999999999999996 444 777
Q ss_pred ee------------eecCCC----H--HHHHHHHHHHhhcCCcEEE---------EeccC------CchhhHHHHHHHHH
Q 014285 197 AI------------TIPAVS----P--AEASELASKYCKLGFSTLK---------LNVGR------NITADFDVLQAIHA 243 (427)
Q Consensus 197 ~~------------~i~~~~----~--~~~~~~~~~~~~~Gf~~iK---------lKiG~------~~~~d~~~l~~ir~ 243 (427)
+. ++++.+ | +++.+++.++.++||+.+| +|+|. ++++|++++++||+
T Consensus 148 ~~~~~~~gg~~~~~~l~~~~~mi~p~~~~~~~~a~~~~~~g~~~lK~~l~~~g~~~kvG~~gg~~~~~~~d~~~l~~vre 227 (431)
T 2fym_A 148 PMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAE 227 (431)
T ss_dssp ECEEEEECGGGSSSSCCSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHTTCCCCBCTTSCBCCCCSSHHHHHHHHHH
T ss_pred eeEeeccCccccccccCcchhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCcccccCcccCCCCCccchHHHHHHHHH
Confidence 54 222233 4 6677788888899999999 99985 67889999999998
Q ss_pred -h-------CCCcEEEEeC----------------C-CCCCHHHHHHHHHHhhh-CCCCCceEeCCCCCCChhhHHHHHH
Q 014285 244 -V-------HPHCSFILDA----------------N-EGYTSEEAVEVLGKLND-MGVIPVLFEQPVHRDDWSGLHDVSN 297 (427)
Q Consensus 244 -~-------~~~~~L~vDA----------------N-~~~s~~~A~~~l~~L~~-~~l~~~~iEqP~~~~d~~~~~~L~~ 297 (427)
+ ++++.|+||+ | ++|++++|+++++.|++ |++ .|||||++++|++++++|++
T Consensus 228 ai~~~g~~~G~dv~l~vDaaas~~~~~~~Y~~~~~n~~~~t~~~ai~~~~~L~~~~~i--~~iEePl~~~d~~~~~~l~~ 305 (431)
T 2fym_A 228 AVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPI--VSIEDGLDESDWDGFAYQTK 305 (431)
T ss_dssp HHHHTTCCBTTTBEEEEECCGGGGEETTEEEEGGGTTEEECHHHHHHHHHHHHHHSCE--EEEESCSCTTCHHHHHHHHH
T ss_pred HHHHhccCCCCccEEEEeechhhccccCceeeccCCCCCCCHHHHHHHHHHHHHhCCc--eEEECCCCcccHHHHHHHHH
Confidence 6 6899999999 9 99999999999999998 986 69999999999999999986
Q ss_pred hhcccc--CCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccC-chhHHHHHH
Q 014285 298 FARDTY--GISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRLATGFA 372 (427)
Q Consensus 298 ~~r~~~--~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~ 372 (427)
++ ++||++|| ++++..+++++++.+++|++|+|++++| ++++++++++|+++|++++++++. ||+++.+|.
T Consensus 306 ----~~~~~ipIa~dEl~~~~~~~~~~~i~~~a~d~i~ik~~~~GGite~~~i~~~A~~~g~~~~~~h~~get~~~~~a~ 381 (431)
T 2fym_A 306 ----VLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIAD 381 (431)
T ss_dssp ----HHTTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECGGGTCSHHHHHHHHHHHHHTTCEEEEECCSSCCSCCHHHH
T ss_pred ----HhCCCCeEEeCCcccCCHHHHHHHHHhCCCCEEEECccccCCHHHHHHHHHHHHHCCCeEEEeCCCCCchHHHHHH
Confidence 46 89999999 9999999999999999999999999998 999999999999999999999888 999998877
Q ss_pred HHHHhhcCC
Q 014285 373 LHLAAGLGC 381 (427)
Q Consensus 373 ~hlaaal~~ 381 (427)
+|++++.++
T Consensus 382 la~a~~~~~ 390 (431)
T 2fym_A 382 LAVGTAAGQ 390 (431)
T ss_dssp HHHHTTCEE
T ss_pred HHHhcCCCc
Confidence 777766543
|
| >1w6t_A Enolase; bacterial infection, surface protein, moonlighting protein, glycolysis, phosphopyruvate hydratase, lyase; HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP: c.1.11.1 d.54.1.1 PDB: 1iyx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-46 Score=383.42 Aligned_cols=297 Identities=21% Similarity=0.261 Sum_probs=243.3
Q ss_pred eEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCC-----------------Ccc-hHHHHH
Q 014285 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLV-----------------TGD-QTKALV 127 (427)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~-----------------s~~-~~~~~~ 127 (427)
.|++|..+. +..+.| ++.++|+|+|++|++| ||+.|.+.. .+. ......
T Consensus 13 ~i~~~~~r~--------i~dsrg----~~~v~V~V~td~G~~G-ge~~p~~~~tG~~ea~elrd~~~~~~~g~~v~~a~~ 79 (444)
T 1w6t_A 13 IITDVYARE--------VLDSRG----NPTLEVEVYTESGAFG-RGMVPSGASTGEHEAVELRDGDKSRYGGLGTQKAVD 79 (444)
T ss_dssp BEEEEEEEE--------EECTTS----CEEEEEEEEETTCCEE-EEECCCC---CCSSCCCCCCCCTTSGGGTCCHHHHH
T ss_pred hcceeEEEE--------EEcCCC----CceEEEEEEECCCCEe-eEecccccccccceeeeeccCcccccccccHHHHHH
Confidence 477777654 233443 3789999999999999 999875422 121 223344
Q ss_pred HHHH-HhhHhcCCCCCCHHHHHHHHHHHCC----CChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeee--
Q 014285 128 KVRE-ACQFLRQSPPTTLNFALDEIARILP----GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAIT-- 199 (427)
Q Consensus 128 ~~~~-~~~~l~g~~~~~~~~~~~~l~~~~~----g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~-- 199 (427)
.+++ +.|.|+|+++.+++.+|+.|.+... +...+++++||||||||++||..|+|||+||||. ++++|+|.+
T Consensus 80 ~i~~~l~p~LiG~d~~~~~~i~~~l~~~~g~~~~~~~g~~A~~avd~AlwD~~ak~~g~Pl~~lLGG~~~~~vp~~~~~~ 159 (444)
T 1w6t_A 80 NVNNIIAEAIIGYDVRDQQAIDRAMIALDGTPNKGKLGANAILGVSIAVARAAADYLEIPLYSYLGGFNTKVLPTPMMNI 159 (444)
T ss_dssp HHHHTHHHHHTTSBTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTSCHHHHHHCTTCCEECEECEEE
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCccccchhHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCcccccccccce
Confidence 4554 8899999999999999999876311 1223579999999999999999999999999996 788998763
Q ss_pred e-c---------C------CCHHHHHHHHHHHhhcCCcEEE---------EeccC------CchhhHHHHHHHHH-h---
Q 014285 200 I-P---------A------VSPAEASELASKYCKLGFSTLK---------LNVGR------NITADFDVLQAIHA-V--- 244 (427)
Q Consensus 200 i-~---------~------~~~~~~~~~~~~~~~~Gf~~iK---------lKiG~------~~~~d~~~l~~ir~-~--- 244 (427)
+ + . ...+++.+++.++.++||+++| +|+|. +++.|++++++||+ +
T Consensus 160 ~~gg~~a~~~l~~qe~mi~p~~~~~~~~a~~~~~~g~~~lK~~lk~kg~~~kvG~~gg~~~~~~~d~~~l~avreav~~a 239 (444)
T 1w6t_A 160 INGGSHSDAPIAFQEFMILPVGAPTFKEALRYGAEIFHALKKILKSRGLETAVGDEGGFAPRFEGTEDGVETILAAIEAA 239 (444)
T ss_dssp EECGGGCSSSCCCSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHTTCCCCBCTTSCBCCCCSSHHHHHHHHHHHHHHT
T ss_pred eccccccccccchhHhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCchHhHHHHHHHHHHHHHHh
Confidence 1 1 0 0113445666777788999999 78884 67889999999998 5
Q ss_pred ----CCCcEEEEeC---------CCC-------------CCHHHHHHHHHHhhh-CCCCCceEeCCCCCCChhhHHHHHH
Q 014285 245 ----HPHCSFILDA---------NEG-------------YTSEEAVEVLGKLND-MGVIPVLFEQPVHRDDWSGLHDVSN 297 (427)
Q Consensus 245 ----~~~~~L~vDA---------N~~-------------~s~~~A~~~l~~L~~-~~l~~~~iEqP~~~~d~~~~~~L~~ 297 (427)
++++.|+||+ |++ ||+++|++++++|.+ |++ .|||||++++|++++++|++
T Consensus 240 gy~pG~dv~L~vDaaas~~~~~~n~~y~~~~n~~~~~~~~t~~eai~~~~~l~~~~~i--~~iEePl~~~d~~~~~~l~~ 317 (444)
T 1w6t_A 240 GYVPGKDVFLGFDCASSEFYDKERKVYDYTKFEGEGAAVRTSAEQIDYLEELVNKYPI--ITIEDGMDENDWDGWKALTE 317 (444)
T ss_dssp TCCBTTTBEEEEECCGGGGBC--CCCEETHHHHCTTCCEECHHHHHHHHHHHHHHSCE--EEEESCSCTTCHHHHHHHHH
T ss_pred ccCCCCCcEEEEEccchhcccccCCceeeccccCcccCCCCHHHHHHHHHHHHHhCCc--EEEECCCChhhHHHHHHHHH
Confidence 7799999999 888 889999999999864 986 69999999999999999986
Q ss_pred hhcccc--CCeEEecCC-CCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccC-chhHHHHHH
Q 014285 298 FARDTY--GISVVADES-CRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRLATGFA 372 (427)
Q Consensus 298 ~~r~~~--~iPIa~dE~-~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~ 372 (427)
++ ++||++||+ +++..+++++++.+++|++|+|++++| ++++++++++|+++|++++++++. ||+++.+|.
T Consensus 318 ----~~~~~ipIa~dE~~~~~~~~~~~~i~~~a~d~i~ik~~~~GGitea~~ia~lA~~~g~~v~~~h~~get~i~~~a~ 393 (444)
T 1w6t_A 318 ----RLGKKVQLVGDDFFVTNTDYLARGIQEGAANSILIKVNQIGTLTETFEAIEMAKEAGYTAVVSHRSGETEDSTIAD 393 (444)
T ss_dssp ----HHTTTSEEEESTTTTTCHHHHHHHHHHTCCSEEEECHHHHCSHHHHHHHHHHHHHTTCEEEEECCSSCCSCCHHHH
T ss_pred ----hhCCCCeEEeCCcccCCHHHHHHHHHcCCCCEEEEcccccCCHHHHHHHHHHHHHCCCeEEecCCCCCchHHHHHH
Confidence 56 899999998 999999999999999999999999998 999999999999999999997666 999998888
Q ss_pred HHHHhhcCC
Q 014285 373 LHLAAGLGC 381 (427)
Q Consensus 373 ~hlaaal~~ 381 (427)
+|++++.++
T Consensus 394 lava~~~~~ 402 (444)
T 1w6t_A 394 IAVATNAGQ 402 (444)
T ss_dssp HHHHTTCCE
T ss_pred HHHhcCCCc
Confidence 888776554
|
| >2ptz_A Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypanosoma brucei} SCOP: c.1.11.1 d.54.1.1 PDB: 2ptx_A 2pty_A* 2ptw_A 2pu0_A 2pu1_A* 1oep_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-44 Score=371.14 Aligned_cols=297 Identities=20% Similarity=0.247 Sum_probs=237.4
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCC----------------CCCc-chHHHHH
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVP----------------LVTG-DQTKALV 127 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~----------------~~s~-~~~~~~~ 127 (427)
|+|++|+++.+..|... +.++|+|+|++| +||||+.+.. .|.+ ....++.
T Consensus 4 m~I~~i~~~~v~~~~~~------------p~v~V~v~td~G-~G~ge~~sgastg~~ea~elrd~~~~~~~g~~v~~av~ 70 (432)
T 2ptz_A 4 MTIQKVHGREVLDSRGN------------PTVEVEVTTEKG-VFRSAVPSGASTGVYEACELRDGDKKRYVGKGCLQAVK 70 (432)
T ss_dssp TSCCEEEEEEEECTTSC------------EEEEEEEEETTE-EEEEECCBCSSCCTTSCCCCCCCCTTTGGGTCCHHHHH
T ss_pred CEEEEEEEEEEecCCCC------------cEEEEEEEeCCc-EEEEEEecccccCcceeeeeccCcccccccccHHHHHH
Confidence 88999999998876543 468999999999 9999986431 1222 1223444
Q ss_pred HHHH-HhhHhcCCCCCCHHHHHHHHHHHC----CCChhhhHHHHHHHHHHHHHHhhCCCChhhhhC---CC-CC--ceee
Q 014285 128 KVRE-ACQFLRQSPPTTLNFALDEIARIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFG---GA-SN--SLST 196 (427)
Q Consensus 128 ~~~~-~~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llg---g~-~~--~ip~ 196 (427)
.+++ +.|.|+|+++.+++.+|+.|.+.. .+...+++++||||||||+.||..|+|||+||| |. +. ++|+
T Consensus 71 ~v~~~iap~LiG~d~~~~~~i~~~m~~~~~~~~~~~~~~~Ai~aVd~AlwD~~ak~~g~Ply~lLG~~~G~~~~~~pvp~ 150 (432)
T 2ptz_A 71 NVNEVIGPALIGRDELKQEELDTLMLRLDGTPNKGKLGANAILGCSMAISKAAAAAKGVPLYRYLASLAGTKELRLPVPC 150 (432)
T ss_dssp HHHHTHHHHHTTCCTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHTCSCCEECEEE
T ss_pred HHHHHHHHHHCCCChhhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHHHHHHHHHhCCcHHHHhccccCCCCcCCceeE
Confidence 4554 889999999999999999997641 122336799999999999999999999999999 86 33 4555
Q ss_pred eeeec--C-----CCHHHH---------HHHHHHHhhcCCcEEEEec----cC----------------CchhhHHH-HH
Q 014285 197 AITIP--A-----VSPAEA---------SELASKYCKLGFSTLKLNV----GR----------------NITADFDV-LQ 239 (427)
Q Consensus 197 ~~~i~--~-----~~~~~~---------~~~~~~~~~~Gf~~iKlKi----G~----------------~~~~d~~~-l~ 239 (427)
|..+. . .+++++ .+++.++.++||+++|+|+ |. +.++|+++ ++
T Consensus 151 ~~~i~gg~~a~~~~~~qe~mi~p~~~~~~~ea~~~~~eg~~~lK~~l~~k~G~~at~vgdegg~~p~~~~~~~~l~~i~~ 230 (432)
T 2ptz_A 151 FNVINGGKHAGNALPFQEFMIAPVKATSFSEALRMGSEVYHSLRGIIKKKYGQDAVNVGDEGGFAPPIKDINEPLPILME 230 (432)
T ss_dssp EEEEECSTTSSSSCCSCEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGGCCBCTTSSBCCSCCCTTTHHHHHHH
T ss_pred EEEecCcccccCCCCHHHhcccCcccCCHHHHHHHHHHHHHHHHHHhHhhcCCCccccCCccCcCCCcccHHHHHHHHHH
Confidence 55432 1 123333 6677788899999999865 53 24788996 89
Q ss_pred HHHHhCC--CcEEEEeCCCCC---------------------CHHHHHHHH-HHhhhCCCCCceEeCCCCCCChhhHHHH
Q 014285 240 AIHAVHP--HCSFILDANEGY---------------------TSEEAVEVL-GKLNDMGVIPVLFEQPVHRDDWSGLHDV 295 (427)
Q Consensus 240 ~ir~~~~--~~~L~vDAN~~~---------------------s~~~A~~~l-~~L~~~~l~~~~iEqP~~~~d~~~~~~L 295 (427)
+||++++ ++.|++|+|++| +..++++++ +.+++|++ .|||||++++||+++++|
T Consensus 231 Air~~G~~g~v~l~vDan~~~~~~~~~~~y~~~~~~~~~~~~~a~~~~~~~~~~l~~y~i--~~iEdPl~~~D~~g~~~l 308 (432)
T 2ptz_A 231 AIEEAGHRGKFAICMDCAASETYDEKKQQYNLTFKSPEPTWVTAEQLRETYCKWAHDYPI--VSIEDPYDQDDFAGFAGI 308 (432)
T ss_dssp HHHHTTCTTSCEEEEECCGGGGEETTTTEEETTTTSSSCCEECHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHHHH
T ss_pred HHHHhCCcCCcEEEEECcccccccccCceeEeeccccccCCCCHHHHHHHHHHHHHhCCc--eEEECCCCcchHHHHHHH
Confidence 9998887 899999999885 455665555 67899986 699999999999999999
Q ss_pred HHhhcccc--CCeEEecCC-CCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEccc-CchhHHHH
Q 014285 296 SNFARDTY--GISVVADES-CRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGM-IETRLATG 370 (427)
Q Consensus 296 ~~~~r~~~--~iPIa~dE~-~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~-~es~ig~~ 370 (427)
++ ++ ++||++||. +++..+++++++.+++|++|+|++++| ++++++++++|+++|++++++++ .|+.++..
T Consensus 309 ~~----~~g~~ipI~gDe~~v~~~~~~~~~i~~~a~d~i~ik~~~~GGitea~~i~~lA~~~g~~v~~~h~~get~~~~~ 384 (432)
T 2ptz_A 309 TE----ALKGKTQIVGDDLTVTNTERIKMAIEKKACNSLLLKINQIGTISEAIASSKLCMENGWSVMVSHRSGETEDTYI 384 (432)
T ss_dssp HH----HTTTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCSCCHH
T ss_pred HH----hcCCCCeEEecCcccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCeEEecCCCCccHHHHH
Confidence 86 46 899999995 789999999999999999999999998 99999999999999999998665 48888877
Q ss_pred HHHHHHhhcC
Q 014285 371 FALHLAAGLG 380 (427)
Q Consensus 371 a~~hlaaal~ 380 (427)
|.+|++.+.+
T Consensus 385 a~lava~~~~ 394 (432)
T 2ptz_A 385 ADLVVALGSG 394 (432)
T ss_dssp HHHHHHHTCS
T ss_pred HHHHHHhCCC
Confidence 7777766554
|
| >3uj2_A Enolase 1; enzyme function initiative, EFI, lyase; 2.00A {Anaerostipes caccae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=355.45 Aligned_cols=301 Identities=23% Similarity=0.292 Sum_probs=232.0
Q ss_pred eeeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCC----------------CCCc-chHHHH
Q 014285 64 WVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVP----------------LVTG-DQTKAL 126 (427)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~----------------~~s~-~~~~~~ 126 (427)
.|+|++|..+.+- .+. ..++|.|+|+|++|.+|+|++.... .|.+ ....++
T Consensus 25 ~m~I~~i~~r~i~--------dsr----g~ptvev~v~t~~G~~G~~~~psgastG~~ea~elrd~~~~~y~g~~v~~av 92 (449)
T 3uj2_A 25 YLEIEKVIGREII--------DSR----GNPTVEAEVYLAGGVTGRGTAPSGASTGEFEALELRDGDKGRFGGKGVTKAV 92 (449)
T ss_dssp TTBEEEEEEEEEE--------CTT----SCEEEEEEEEETTSCEEEEECCBC---CCSSCCCCCCCCTTSGGGTCCHHHH
T ss_pred ceEEEEEEEEEEE--------CCC----CCCeEEEEEEECCCCEEEEeccCCCcCcceeEEEeccCCcccccchhHHHHH
Confidence 4899999876531 111 1378999999999999999875421 2333 223444
Q ss_pred HHHH-HHhhHhcCCCCCCHHHHHHHHHHHC----CCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCC-Cceee--ee
Q 014285 127 VKVR-EACQFLRQSPPTTLNFALDEIARIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGAS-NSLST--AI 198 (427)
Q Consensus 127 ~~~~-~~~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~-~~ip~--~~ 198 (427)
..++ .+.|.|+|+++.+++.+|+.|.+.. .+....++++||||||||+.||.+|+|||+||||.. +++|+ |.
T Consensus 93 ~~v~~~iap~LiG~d~~~~e~i~~~m~~~dgt~~k~~lg~nAi~aVd~Alwda~ak~~g~PLy~lLGG~~~~~lpvp~~n 172 (449)
T 3uj2_A 93 QNINTEISEILSGMDASDIYAVDRAMIDADGTKDKSKFGANAVLAVSIACAKAAAAALGVPLYRFLGGLNANRLPVPMMN 172 (449)
T ss_dssp HHHHTHHHHHHTTSBTTCHHHHHHHHHHHHCSSSCTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHHGGGCCBCCEECEE
T ss_pred HHHHHHHHHHHccCCccCHHHHHHHHHHhcCcCCcchhhHHHHHHHHHHHHHHHHHHhCCCHHHHhCCCCCCceeeeeEE
Confidence 4454 3889999999999999999998742 122335799999999999999999999999999984 56666 44
Q ss_pred ee--cCC-----CHHH---------HHHHHHHHhhcCCcEEEE--e-------ccC------C---chhhHHHH-HHHHH
Q 014285 199 TI--PAV-----SPAE---------ASELASKYCKLGFSTLKL--N-------VGR------N---ITADFDVL-QAIHA 243 (427)
Q Consensus 199 ~i--~~~-----~~~~---------~~~~~~~~~~~Gf~~iKl--K-------iG~------~---~~~d~~~l-~~ir~ 243 (427)
.+ +.. +.++ ..+++.++.++||+++|+ | +|. + .+++++++ ++||+
T Consensus 173 ~inGG~ha~~~~~~qEfmi~P~ga~~~~ea~~~~~egy~~lK~~lk~~g~~t~vGdeggfap~~~~~~e~l~~i~~AIr~ 252 (449)
T 3uj2_A 173 ILNGGAHAANTVDVQEFMIMPVGAESFREALRQCTEVFHALAGLLKSKGLATSVGDEGGFAPDLASDEEAIEYILEAVKL 252 (449)
T ss_dssp EEECSTTSSSSCCSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHTTCCCCBCTTSCBCCCCSCHHHHHHHHHHHHHH
T ss_pred EecCcccCCCccchhhhhhCCcccccHHHHHHHHHHHHHHHHHHHhhcCCccccCCCCCcCCCccCHHHHHHHHHHHHHH
Confidence 33 211 1221 345666778899999998 4 552 2 35677777 78888
Q ss_pred h----CCCcEEEEeCCC------------------CCCHHHHHHHHHH-hhhCCCCCceEeCCCCCCChhhHHHHHHhhc
Q 014285 244 V----HPHCSFILDANE------------------GYTSEEAVEVLGK-LNDMGVIPVLFEQPVHRDDWSGLHDVSNFAR 300 (427)
Q Consensus 244 ~----~~~~~L~vDAN~------------------~~s~~~A~~~l~~-L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r 300 (427)
. |+++.|++|+|+ .||+++|++++++ |++|++ .|||||++++||+++++|++.+
T Consensus 253 agy~~G~dv~l~vD~aase~~~~~~g~Y~l~~~~~~~t~~eai~~~~~lle~y~i--~~IEdPl~~dD~eg~~~L~~~~- 329 (449)
T 3uj2_A 253 AGYEPGRDFVLAMDAASSEWKGEKKGEYILPKCKRKFASEELVAHWKSLCERYPI--VSIEDGLDEEDWEGWQYMTREL- 329 (449)
T ss_dssp TTCCBTTTBEEEEECCGGGCBCSSTTEEECTTTCCEEEHHHHHHHHHHHHHHSCE--EEEESCSCTTCHHHHHHHHHHH-
T ss_pred hccccCCceEEEEEcchhhhccccCceeeccCcccccCHHHHHHHHHHHHHhcCc--eEEECCCCcchHHHHHHHHHHh-
Confidence 6 568999999984 3689999999986 899986 5999999999999999998721
Q ss_pred cccCCeEEecCCCC-CHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcc-cCchhHHHHHHHHHHh
Q 014285 301 DTYGISVVADESCR-SLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDG-MIETRLATGFALHLAA 377 (427)
Q Consensus 301 ~~~~iPIa~dE~~~-~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s-~~es~ig~~a~~hlaa 377 (427)
..++||++||++. ++.+++++++.+++|++|+|++++| +|++++++++|+++|+++++++ ..|+..+.. +||+.
T Consensus 330 -~~~ipI~gDE~~~tn~~~~~~~i~~~a~d~i~iKv~~iGGiTea~kia~lA~~~Gi~~~v~H~sgET~d~~i--adLaV 406 (449)
T 3uj2_A 330 -GDKIQLVGDDLFVTNTERLNKGIKERCGNSILIKLNQIGTVSETLEAIKMAHKAGYTAVVSHRSGETEDTTI--ADLAV 406 (449)
T ss_dssp -TTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCSHHHHHHHHHHHHHTTCEEEEECCSBCCSCCHH--HHHHH
T ss_pred -CCCceEECCcceeCCHHHHHHHHHcCCCCEEEECccccCCHHHHHHHHHHHHHcCCeEEEeCCCCCchHHHH--HHHHH
Confidence 2289999999976 6999999999999999999999998 9999999999999999966555 447876654 46666
Q ss_pred hcCCc
Q 014285 378 GLGCI 382 (427)
Q Consensus 378 al~~~ 382 (427)
++++.
T Consensus 407 a~~~~ 411 (449)
T 3uj2_A 407 ALNTG 411 (449)
T ss_dssp HTTCC
T ss_pred HhCCC
Confidence 65543
|
| >3qn3_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, glycolysis, lyase; 2.13A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-42 Score=348.89 Aligned_cols=297 Identities=21% Similarity=0.244 Sum_probs=233.8
Q ss_pred eEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecC---------------CCCCc-chHHHHHHH
Q 014285 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV---------------PLVTG-DQTKALVKV 129 (427)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~---------------~~~s~-~~~~~~~~~ 129 (427)
+|++|..+.+ ..|. ..++|.|+|+|++|.+|++.+... +.|.+ ....++..+
T Consensus 6 ~i~~i~~r~i--------~dsr----G~ptvev~v~t~~g~~g~a~vpsgastg~~ea~elrd~~~~y~gkgv~~av~~v 73 (417)
T 3qn3_A 6 VIEDVRAYEV--------LDSR----GNPTVKAEVTLSDGSVGAAIVPSGASTGSKEALELRDNDERFGGKGVLKAVANV 73 (417)
T ss_dssp BEEEEEEEEE--------ECTT----SCEEEEEEEEETTCCEEEEECCCCBSSCSSSCBCCCCCSTGGGGTCCHHHHHHH
T ss_pred eeeEEEEEEE--------EcCC----CCceEEEEEEECCCCEEEEecCCCCccccceeeeecCCCccccCccHHHHHHHH
Confidence 5788876542 2232 267899999999999999865321 01222 123445555
Q ss_pred HH-HhhHhcCCCCCCHHHHHHHHHHHC----CCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC-CCceeeeee--e-
Q 014285 130 RE-ACQFLRQSPPTTLNFALDEIARIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAIT--I- 200 (427)
Q Consensus 130 ~~-~~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~--i- 200 (427)
++ +.|.|+|+++.+++.+|+.|.+.. .+....++++||||||||+.||..|+|||+||||. ++++|+|.. +
T Consensus 74 ~~~iap~LiG~d~~~~~~id~~m~~~dgt~~k~~lg~nAi~aVs~Al~da~ak~~g~PLy~lLGG~~~~~lPv~~~nvin 153 (417)
T 3qn3_A 74 NETIADEILGLDAFNQTQLDDTLRELDGTNNYSNLGANATLGVSMATARAAAAALGMPLYRYLGGANASILPVPMCNIIN 153 (417)
T ss_dssp HTHHHHHHTTSBTTCHHHHHHHHHHHHCSSSCTTTCHHHHHHHHHHHHHHHHHHTTCCHHHHHHGGGCCEECEEEEEEEE
T ss_pred HHHHHHHHCCCCccCHHHHHHHHHHhhccCCCCchhhhhHHHHHHHHHHHHHHHhCCcHHHHhCCCCCcceeeeeeeeec
Confidence 54 889999999999999999998742 12334679999999999999999999999999998 678998853 1
Q ss_pred -cC-----CCHHHH------HHHHHHHhhcC---CcEEEE---------eccC---------CchhhHHHH-HHHHHhC-
Q 014285 201 -PA-----VSPAEA------SELASKYCKLG---FSTLKL---------NVGR---------NITADFDVL-QAIHAVH- 245 (427)
Q Consensus 201 -~~-----~~~~~~------~~~~~~~~~~G---f~~iKl---------KiG~---------~~~~d~~~l-~~ir~~~- 245 (427)
+. .++++. .+.+++.++.| |+++|+ |+|. +.++|++++ ++||+.|
T Consensus 154 GG~ha~~~~~~qe~mi~P~ga~~~~ea~~~G~evy~~lK~~l~~kg~~t~vGdegg~ap~~~~~~e~l~~i~~Air~aGy 233 (417)
T 3qn3_A 154 GGAHANNNVDFQEFMIMPFGFTSFKEALRSVCEIYAILKKELANSGHSTALGDEGGFAPNLANNTEPIDLLMTCIKKAGY 233 (417)
T ss_dssp CGGGSSSSCCCSEEEEEECSCSSHHHHHHHHHHHHHHHHHHHHHTTCCCCBCTTSCBCCCCSSSSHHHHHHHHHHHHTTC
T ss_pred CcccCCCcccHHHHhcCccchHHHHHHHHHhHHHHHHHHHHHHhcCcccccCCCCCcCCCcCCHHHHHHHHHHHHHHcCC
Confidence 11 122221 23344455666 888888 6663 357899998 8999987
Q ss_pred -CCcEEEEeCCCC--------------CCHHHHHHHHHH-hhhCCCCCceEeCCCCCCChhhHHHHHHhhcccc--CCeE
Q 014285 246 -PHCSFILDANEG--------------YTSEEAVEVLGK-LNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTY--GISV 307 (427)
Q Consensus 246 -~~~~L~vDAN~~--------------~s~~~A~~~l~~-L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~--~iPI 307 (427)
|++.|++|+|++ ||+++|+++++. +++|++ .|||||++++||+++++|++ ++ ++||
T Consensus 234 ~~dv~l~vD~~ase~~~~g~y~l~~~~~t~~eai~~~~~ll~~y~i--~~IEdPl~~dD~e~~~~L~~----~~g~~ipI 307 (417)
T 3qn3_A 234 ENRVKIALDVASTEFFKDGKYHMEGKAFSSEALIERYVELCAKYPI--CSIEDGLAENDFEGWIKLTE----KLGNKIQL 307 (417)
T ss_dssp TTTEEEEEECCGGGGEETTEEEETTEEECHHHHHHHHHHHHHHSCE--EEEESSSCTTCHHHHHHHHH----HHTTTSEE
T ss_pred CCCceEEEECCchhhccCCeeecCCCccCHHHHHHHHHHHHhhcce--eEEecCCCcccHHHHHHHHH----hhCCCCce
Confidence 899999999986 579999999998 899986 69999999999999999987 45 6999
Q ss_pred EecCCCCC-HHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccC-chhHHHHHHHHHHhhcCCc
Q 014285 308 VADESCRS-LNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAAGLGCI 382 (427)
Q Consensus 308 a~dE~~~~-~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hlaaal~~~ 382 (427)
++||++.+ +.+++++++.+++|++++|++++| +|++++++++|+++|+++|++++. |+..+. ++||+.++++.
T Consensus 308 ~gDE~~~tn~~~~~~~i~~~a~d~i~iKv~qiGGiTea~kia~lA~~~G~~v~vsh~sgEt~d~~--iadlava~~~~ 383 (417)
T 3qn3_A 308 VGDDLFVTNEDILREGIIKKMANAVLIKPNQIGTITQTMRTVRLAQRNNYKCVMSHRSGESEDAF--IADFAVALNTG 383 (417)
T ss_dssp EESTTTTTCHHHHHHHHHHTCCSEEEECHHHHCSHHHHHHHHHHHHHTTCEEEEECCSSCCSCCH--HHHHHHHTTCS
T ss_pred ecCCcccCCHHHHHHHHHhCCCCEEEecCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCCCchHHH--HHHHHHHhCCC
Confidence 99999887 999999999999999999999998 999999999999999999988765 776654 45666666553
|
| >3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-41 Score=341.83 Aligned_cols=283 Identities=23% Similarity=0.283 Sum_probs=221.6
Q ss_pred eeEEEEEEEEcCCceEEEEeecCC----------------CCCc-chHHHHHHHH-HHhhHhcCCCCCCHHHHHHHHHHH
Q 014285 93 VENVAIRVELSNGCVGWGEVAVVP----------------LVTG-DQTKALVKVR-EACQFLRQSPPTTLNFALDEIARI 154 (427)
Q Consensus 93 ~~~vlV~v~t~~G~~G~GE~~~~~----------------~~s~-~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~l~~~ 154 (427)
.++|.|+|+|++|.+|+|.+.... .|.+ ....++..++ .+.|.|+|+++.+++.+|+.|.+.
T Consensus 19 ~ptvev~v~t~~G~~G~~~~psgastG~~ea~elrd~~~~~y~gkgv~~av~~v~~~iap~LiG~d~~~~~~i~~~m~~~ 98 (428)
T 3tqp_A 19 NPTLEVRVTLSSQAYGCAAVPSGASTGEREAVELRDNDLERYGGKGVLQAVENVNGPIRDALLGQDPRSQEEIDRIMIEL 98 (428)
T ss_dssp CEEEEEEEEETTSCEEEEECCBCC---CCSCCCCCCCCTTSGGGTCCHHHHHHHHTHHHHHHTTCCTTCHHHHHHHHHHH
T ss_pred CCEEEEEEEECCCCEEEEeccccccCCcceeEeecCCCccccccccHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHh
Confidence 478999999999999999654321 1222 1233444454 488999999999999999999874
Q ss_pred C----CCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCC-CC---CceeeeeeecCC-------CHHH---------HHH
Q 014285 155 L----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG-AS---NSLSTAITIPAV-------SPAE---------ASE 210 (427)
Q Consensus 155 ~----~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg-~~---~~ip~~~~i~~~-------~~~~---------~~~ 210 (427)
. .+....++++||||||||+.||.+|+|||+|||| .+ .++|+|..+... +.++ ..+
T Consensus 99 dgt~~k~~lg~nAi~aVd~Alwda~ak~~g~PLy~lLGG~~~~~~~pvp~~~~inGG~ha~~~~~~qefmi~P~ga~~~~ 178 (428)
T 3tqp_A 99 DGTENKANLGANAILGVSLAVAYAAANNADLPLYRYLGGDGGPFSMPVPMMNIINGGAHATNNLDFQEFMIVPVGAPTFA 178 (428)
T ss_dssp HCCTTCTTTCHHHHHHHHHHHHHHHHHHTTCCHHHHHHTTTCCCCBCEEEEEEEECC----CCCSSSEEEEECTTCSSHH
T ss_pred cCcCCcCccchhHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCCceeeeEEEEEecCcccCCCccchhHHhhcCcchhhHH
Confidence 2 1233357899999999999999999999999999 53 467777654221 1122 345
Q ss_pred HHHHHhhcCCcEEEEe---------cc------CCchhhHHH----HHHHHHh----CCCcEEEEeC-------------
Q 014285 211 LASKYCKLGFSTLKLN---------VG------RNITADFDV----LQAIHAV----HPHCSFILDA------------- 254 (427)
Q Consensus 211 ~~~~~~~~Gf~~iKlK---------iG------~~~~~d~~~----l~~ir~~----~~~~~L~vDA------------- 254 (427)
++.++.++||+.+|+| +| ++++.|.+. +++||+. |+++.|++|+
T Consensus 179 ea~~~~~egy~~lK~~l~~~g~~t~vGdegg~ap~~~~~~e~l~~i~~Air~agy~~G~dv~l~vD~aase~~~~g~Y~l 258 (428)
T 3tqp_A 179 EALRYGAEVFHALKKRLVSRGLMSAVGDEGGFAPDLPNNEAAFELILEAIEDANYVPGKDIYLALDAASSELYQNGRYDF 258 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCBCTTSCBCCCCSSHHHHHHHHHHHHHHTTCCBTTTBEEEEECCGGGSEETTEECC
T ss_pred HHHHHHHHHHHhHhhhhcccccccccCCCCCcCCCcccHHHHHHHHHHHHHHhhcccCCceEEEEecchhhhccCCceec
Confidence 6667788999999998 55 234445555 6899986 4699999999
Q ss_pred -CCCCCHHHHHHHHHH-hhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecC-CCCCHHHHHHHHHcCCCcEE
Q 014285 255 -NEGYTSEEAVEVLGK-LNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLASVV 331 (427)
Q Consensus 255 -N~~~s~~~A~~~l~~-L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i 331 (427)
|++||+++|+++++. +++|++ .|||||++++||+++++|++.+ ..++||++|| .+.+..+++++++.+++|++
T Consensus 259 ~~~~~t~~eai~~~~~ll~~y~i--~~IEdPl~~dD~eg~~~L~~~~--~~pI~ivGDel~vt~~~~~~~~i~~~a~d~i 334 (428)
T 3tqp_A 259 ENNQLTSEEMIDRLTEWTKKYPV--ISIEDGLSENDWAGWKLLTERL--ENKVQLVGDDIFVTNPDILEKGIKKNIANAI 334 (428)
T ss_dssp SSSCBCHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHHHHHHHH--TTTSEEEESTTTTTCHHHHHHHHHTTCCSEE
T ss_pred cccccCHHHHHHHHHHHHhhccc--ceEeCCCCcccHHHHHHHHHhc--CCCcceeccccccCCHHHHHHHHHhCCCCEE
Confidence 589999999999998 899986 6999999999999999998732 2358888888 57899999999999999999
Q ss_pred EeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccC-chhHHHHHHHHHHhhcCC
Q 014285 332 NIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAAGLGC 381 (427)
Q Consensus 332 ~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hlaaal~~ 381 (427)
|+|++++| +|++++++++|+++|++++++++. |+..+..| ||+.++++
T Consensus 335 ~iKv~~iGGiTealkia~lA~~~G~~~~v~H~sGEted~~ia--dLaVa~~~ 384 (428)
T 3tqp_A 335 LVKLNQIGTLTETLATVGLAKSNKYGVIISHRSGETEDTTIA--DLAVATDA 384 (428)
T ss_dssp EECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCSCCHHH--HHHHHTTC
T ss_pred EecccccCCHHHHHHHHHHHHHcCCeEEEeCCCCCchHHHHH--HHHHHcCC
Confidence 99999998 999999999999999997666544 77666554 55555544
|
| >2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A {Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB: 1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A 4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A* 2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-40 Score=335.80 Aligned_cols=281 Identities=18% Similarity=0.202 Sum_probs=214.8
Q ss_pred eeEEEEEEEEcCCceEEEEeecCC----------------CCCc-chHHHHHHHHH-HhhHhc--CCCCCCHHHHHHHHH
Q 014285 93 VENVAIRVELSNGCVGWGEVAVVP----------------LVTG-DQTKALVKVRE-ACQFLR--QSPPTTLNFALDEIA 152 (427)
Q Consensus 93 ~~~vlV~v~t~~G~~G~GE~~~~~----------------~~s~-~~~~~~~~~~~-~~~~l~--g~~~~~~~~~~~~l~ 152 (427)
.+.++|+|+|++| +||||+.... .|.+ ....++..+++ +.|.|+ |+++.+++.+|+.|.
T Consensus 16 ~~tv~V~V~t~~G-~G~g~~psgastG~~ea~elrd~~~~~~~g~~v~~av~~v~~~iap~Li~~G~d~~~~~~i~~~m~ 94 (436)
T 2al1_A 16 NPTVEVELTTEKG-VFRSIVPSGASTGVHEALEMRDGDKSKWMGKGVLHAVKNVNDVIAPAFVKANIDVKDQKAVDDFLI 94 (436)
T ss_dssp CEEEEEEEEETTE-EEEEECCBCSSCCTTSCCCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHHHHTCCTTCHHHHHHHHH
T ss_pred CcEEEEEEEECCc-eEEEeecccccCCcceeeeeccCccccccCccHHHHHHHHHHHHHHHHHHCCCChhhHHHHHHHHH
Confidence 3579999999999 9999975321 1222 12334445555 889999 999999999999987
Q ss_pred HHC----CCChhhhHHHHHHHHHHHHHHhhCCCChhhhhC---CCC---Cceeeeee--e--cC---C--C---------
Q 014285 153 RIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFG---GAS---NSLSTAIT--I--PA---V--S--------- 204 (427)
Q Consensus 153 ~~~----~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llg---g~~---~~ip~~~~--i--~~---~--~--------- 204 (427)
+.. .+...+++++||||||||+.||.+|+|||+||| |.. +++|++.. + +. + +
T Consensus 95 ~~dgt~~~~~lg~~Ai~aVd~Al~Da~ak~~g~PLy~lLG~l~G~~~~~~~lpvp~~n~inGg~ha~~~~~~qefmi~p~ 174 (436)
T 2al1_A 95 SLDGTANKSKLGANAILGVSLAASRAAAAEKNVPLYKHLADLSKSKTSPYVLPVPFLNVLNGGSHAGGALALQEFMIAPT 174 (436)
T ss_dssp HHHCSTTSTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTCCCTTEEECEEEEEEEECGGGSSSSCCSCEEEEECT
T ss_pred HhcCCcccchhHHHHHHHHHHHHHHHHHHHhCCCHHHHhCcccCCCCcCceeeEEEEEeecCccccCCccccccceecCc
Confidence 631 123346799999999999999999999999999 864 56777432 1 10 0 0
Q ss_pred HHHHHHHHHHHhhcCCcEEEE----e-------cc------CCchhhHHHHHHHHH----hCC--CcEEEEeC-------
Q 014285 205 PAEASELASKYCKLGFSTLKL----N-------VG------RNITADFDVLQAIHA----VHP--HCSFILDA------- 254 (427)
Q Consensus 205 ~~~~~~~~~~~~~~Gf~~iKl----K-------iG------~~~~~d~~~l~~ir~----~~~--~~~L~vDA------- 254 (427)
..+..+++.++.++||+.+|. | +| ++++.+.+.++.|++ .++ ++.|++|+
T Consensus 175 ~a~~~~ea~~~~~e~~~~lK~~l~~k~G~~a~~vGdegg~~p~~~~~~~~l~~i~~ai~~~G~~g~v~l~vD~aase~~~ 254 (436)
T 2al1_A 175 GAKTFAEALRIGSEVYHNLKSLTKKRYGASAGNVGDEGGVAPNIQTAEEALDLIVDAIKAAGHDGKVKIGLDCASSEFFK 254 (436)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHHHHCGGGGSBCTTSCBCCCCSCHHHHHHHHHHHHHHHTCTTTCEEEEECCGGGGEE
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccCcCCCccCHHHHHHHHHHHHHHcCCCcceEEEEechhhhhcc
Confidence 011223444455667777773 3 43 134556666666655 354 79999999
Q ss_pred ---------------CCCCCHHHHHHHHH-HhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCC-CCHH
Q 014285 255 ---------------NEGYTSEEAVEVLG-KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESC-RSLN 317 (427)
Q Consensus 255 ---------------N~~~s~~~A~~~l~-~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~-~~~~ 317 (427)
|++||+++|++++. .+++|++ .|||||++++||+++++|++ ++++||++||+. +++.
T Consensus 255 n~~y~~~~~~~~~~~~~~~t~~eai~~~~~~l~~y~i--~~iEdPl~~dD~~g~~~l~~----~~~ipI~gDE~~vt~~~ 328 (436)
T 2al1_A 255 DGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPI--VSIEDPFAEDDWEAWSHFFK----TAGIQIVADDLTVTNPK 328 (436)
T ss_dssp TTEECTTTTCTTCCGGGCBCHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHHHHHT----TCCSEEEESTTTTTCHH
T ss_pred CCceEEecccccccccccCCHHHHHHHHHHHHHhCCc--EEEECCCCCcCHHHHHHHHh----cCCCeEEECCcccCCHH
Confidence 44568899987755 5688986 59999999999999999986 689999999985 6899
Q ss_pred HHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEccc-CchhHHHHHHHHHHhhcC
Q 014285 318 DVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGM-IETRLATGFALHLAAGLG 380 (427)
Q Consensus 318 ~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~-~es~ig~~a~~hlaaal~ 380 (427)
+++++++.+++|++++|++++| +|++++++++|+++|+.++++++ .|+.++..|.+|++.+.+
T Consensus 329 ~~~~~i~~~a~d~i~ikv~qiGGitea~~ia~lA~~~g~~~~~sh~sgEt~~~~iA~lava~~~~ 393 (436)
T 2al1_A 329 RIATAIEKKAADALLLKVNQIGTLSESIKAAQDSFAAGWGVMVSHRSGETEDTFIADLVVGLRTG 393 (436)
T ss_dssp HHHHHHHTTCCSEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCSCCHHHHHHHHTTCS
T ss_pred HHHHHHHhCCCCEEEechhhcCCHHHHHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHhcCC
Confidence 9999999999999999999998 99999999999999999988654 589888777777776654
|
| >2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity, glycolysis, , isothermal titration calorimetry, lyase; 1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A 1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-39 Score=330.99 Aligned_cols=281 Identities=20% Similarity=0.220 Sum_probs=215.0
Q ss_pred eeEEEEEEEEcCCceEEEEeecCC----------------CCCc-chHHHHHHHHH-HhhHhc--CCCCCCHHHHHHHHH
Q 014285 93 VENVAIRVELSNGCVGWGEVAVVP----------------LVTG-DQTKALVKVRE-ACQFLR--QSPPTTLNFALDEIA 152 (427)
Q Consensus 93 ~~~vlV~v~t~~G~~G~GE~~~~~----------------~~s~-~~~~~~~~~~~-~~~~l~--g~~~~~~~~~~~~l~ 152 (427)
.+.++|+|+|++|+ |||++.... .|.+ ....++..+++ +.|.|+ |+++.+++.+|+.|.
T Consensus 16 ~~tv~V~V~t~~G~-G~~~~psgastG~~Ea~el~d~~~~~~~g~~v~~av~~v~~~iap~Li~~G~d~~~~~~i~~~m~ 94 (439)
T 2akz_A 16 NPTVEVDLYTAKGL-FRAAVPSGASTGIYEALELRDGDKQRYLGKGVLKAVDHINSTIAPALISSGLSVVEQEKLDNLML 94 (439)
T ss_dssp CEEEEEEEEETTEE-EEEECCBCSSCCTTSCCCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHHHHCCCTTCHHHHHHHHH
T ss_pred CceEEEEEEECCCc-eEeeccCCCceeEEEEeeccCCCccccCCCcHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHH
Confidence 35799999999999 998765421 1222 12334445555 889999 999999999999987
Q ss_pred HHC----CCChhhhHHHHHHHHHHHHHHhhCCCChhhhhC---CC-CCceeeeee--ecCC-------C---------HH
Q 014285 153 RIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFG---GA-SNSLSTAIT--IPAV-------S---------PA 206 (427)
Q Consensus 153 ~~~----~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llg---g~-~~~ip~~~~--i~~~-------~---------~~ 206 (427)
+.. .+...+++++||||||||+.||.+|+|||+||| |. ++++|++.. +... + ..
T Consensus 95 ~~dgt~~~~~lg~nAi~aVs~Al~Da~ak~~g~PLy~lLG~~~G~~~~~lpvp~~~~inGg~ha~~~~~~qefmi~p~~a 174 (439)
T 2akz_A 95 ELDGTENKSKFGANAILGVSLAVCKAGAAERELPLYRHIAQLAGNSDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGA 174 (439)
T ss_dssp HHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTCCSCCBCEEEEEEEECGGGSSSSCCSCEEEEECTTC
T ss_pred HhcCCcccchHHHHHHHHHHHHHHHHHHHHhCCCHHHHhCcccCCCCceeEEEEEEEecCccccccccccccceecCCCc
Confidence 631 123346799999999999999999999999999 86 567887532 1000 0 01
Q ss_pred HHHHHHHHHhhcCCcEEEE----e-------cc------CCchhhHHHHHHHHH----hCC--CcEEEEeC---------
Q 014285 207 EASELASKYCKLGFSTLKL----N-------VG------RNITADFDVLQAIHA----VHP--HCSFILDA--------- 254 (427)
Q Consensus 207 ~~~~~~~~~~~~Gf~~iKl----K-------iG------~~~~~d~~~l~~ir~----~~~--~~~L~vDA--------- 254 (427)
+..+++.++.++||+.+|. | +| ++++.+.+.++.|++ +++ ++.|++|+
T Consensus 175 ~~~~ea~~~~~e~~~~lK~~lk~k~G~~~~~vGdegg~~p~~~~~~e~l~~i~~ai~~~G~~g~v~l~vD~a~se~~~~g 254 (439)
T 2akz_A 175 ESFRDAMRLGAEVYHTLKGVIKDKYGKDATNVGDEGGFAPNILENSEALELVKEAIDKAGYTEKIVIGMDVAASEFYRDG 254 (439)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHCGGGGCBCTTSCBCCSCCCHHHHHHHHHHHHHHHTCTTTCEEEEECCGGGGEETT
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccCcCCCcccHHHHHHHHHHHHHHcCCccceEEEEechHhhhccCC
Confidence 1223444555667877773 3 33 124556667766665 354 79999999
Q ss_pred ------------CCCCCHHHHHHHHHH-hhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCC-CCCHHHHH
Q 014285 255 ------------NEGYTSEEAVEVLGK-LNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADES-CRSLNDVQ 320 (427)
Q Consensus 255 ------------N~~~s~~~A~~~l~~-L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~-~~~~~~~~ 320 (427)
|+.||++++++++.+ +++|++ .|||||++++||+++++|++ ++++||++||. ++++.+++
T Consensus 255 ~y~l~~~~~~~~~~~~t~~e~~~~~~~ll~~y~i--~~IEdPl~~dD~~g~~~L~~----~~~ipI~gDE~~vt~~~~~~ 328 (439)
T 2akz_A 255 KYDLDFKSPTDPSRYITGDQLGALYQDFVRDYPV--VSIEDPFDQDDWAAWSKFTA----NVGIQIVGDDLTVTNPKRIE 328 (439)
T ss_dssp EECTTTTSSCCGGGCBCHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHHHHHH----TCSSEEEESTTTTTCHHHHH
T ss_pred eeEEeccccccccccCCHHHHHHHHHHHHHhCCC--cEEECCCCcccHHHHHHHHh----CCCCEEEeCCCccCCHHHHH
Confidence 445688998877654 688986 69999999999999999986 68999999997 47999999
Q ss_pred HHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcc-cCchhHHHHHHHHHHhhcC
Q 014285 321 KVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDG-MIETRLATGFALHLAAGLG 380 (427)
Q Consensus 321 ~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s-~~es~ig~~a~~hlaaal~ 380 (427)
++++.+++|++++|++++| ++++++++++|+++|+.+++++ +.|+.++..|.+|++.+.+
T Consensus 329 ~~i~~~a~d~i~iKv~qiGGitea~~ia~lA~~~g~~~~~sh~~gEt~~~~iA~lava~~~~ 390 (439)
T 2akz_A 329 RAVEEKACNCLLLKVNQIGSVTEAIQACKLAQENGWGVMVSHRSGETEDTFIADLVVGLCTG 390 (439)
T ss_dssp HHHHTTCCSEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCSCCHHHHHHHHHTCS
T ss_pred HHHHhCCCCEEEechhhcCCHHHHHHHHHHHHHCCCeEEeecCCCccHHHHHHHHHHHhcCC
Confidence 9999999999999999998 9999999999999999988854 5589888888777776654
|
| >3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.1e-25 Score=220.65 Aligned_cols=295 Identities=21% Similarity=0.271 Sum_probs=207.6
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCC----------------CCCc-chHHHHH
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVP----------------LVTG-DQTKALV 127 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~----------------~~s~-~~~~~~~ 127 (427)
|.|++|..+.+ ..|+| .++|-|+|.|++|.. .+-+.... .|.+ ....++.
T Consensus 6 m~I~~i~ar~i--------ldsrG----nptvev~v~~~~g~~-ra~vPsgaStG~~Ea~elrd~d~~~y~Gkgv~kAv~ 72 (441)
T 3qtp_A 6 MSIQKVHAREI--------LDSRG----NPTIEVEITTGKGMF-RSCVPSGASTGVHEAVELRDGDKKRYGGKGVLKAVE 72 (441)
T ss_dssp TBCCEEEEEEE--------ECTTS----CEEEEEEEEETTEEE-EEECCCCCSCCSSSCCCCCCCCTTSGGGTCCHHHHH
T ss_pred cEEEEEEEEEE--------ECCCC----CEEEEEEEEECCCcE-EEecccCCCCCcceeEeecCCCcccccCccHHHHHH
Confidence 66777776542 12222 578899999998865 43332210 1222 2334556
Q ss_pred HHHH-HhhHhcCCCCCCHHHHHHHHHHHC----CCChhhhHHHHHHHHHHHHHHhhCCCChhhhhC---CC-CCceeeee
Q 014285 128 KVRE-ACQFLRQSPPTTLNFALDEIARIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFG---GA-SNSLSTAI 198 (427)
Q Consensus 128 ~~~~-~~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llg---g~-~~~ip~~~ 198 (427)
.+++ +.|.|+|.++.+.+.+++.|.+.- ....-.+++.|+.+|++.+.|+..|+|||++++ |. ...+|+..
T Consensus 73 ~vn~~iap~Lig~~~~dQ~~iD~~m~~lDgT~nks~lGaNail~vSlAvakAaA~~~~~PLy~~l~~l~g~~~~~lPvP~ 152 (441)
T 3qtp_A 73 NVNTIIGPALLGKNVLNQAELDEMMIKLDGTNNKGKLGANAILGCSMSICRAAAAEKGLPLYKYLAELTGHKEMTMPVPC 152 (441)
T ss_dssp HHHHTHHHHHTTCBTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTCCCCCBCEEE
T ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCccCCCccchhhHHHHHHHHHHHhcCCcHHHHHHhhcCCCCceeccce
Confidence 6655 789999999999999998887631 122336789999999999999999999999996 43 33444421
Q ss_pred --e------------------ec--CCCHHHHHHH-------HHHHhhc--CCcEEEEecc------CCc---hhhHHHH
Q 014285 199 --T------------------IP--AVSPAEASEL-------ASKYCKL--GFSTLKLNVG------RNI---TADFDVL 238 (427)
Q Consensus 199 --~------------------i~--~~~~~~~~~~-------~~~~~~~--Gf~~iKlKiG------~~~---~~d~~~l 238 (427)
. +| ..++.+..+. .++.++. |... ..+| +++ ++-++.|
T Consensus 153 ~nvinGG~ha~n~l~~QEfmi~P~ga~sf~ealr~~~evyh~Lk~~l~~k~g~~~--t~vgdEGgfap~~~~~~eaL~ll 230 (441)
T 3qtp_A 153 FNVINGGAHAGNALAMQEFMICPTGATNFHEALRMAAETYQCLKVVIKAKYGQDA--TNVGDEGGFAPNVSGAREALDLL 230 (441)
T ss_dssp EEEEECGGGCSSSCCSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGG--GCBCTTSCBCCCCSSHHHHHHHH
T ss_pred EeeecCCccCCCccccceeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHhcCccc--ccccCCcccCCCCCCHHHHHHHH
Confidence 1 11 1244443221 2222221 3210 1122 233 4445554
Q ss_pred -HHHHHhC--CCcEEEEeCC---------C-----------------CCCHHHHHHHHHH-hhhCCCCCceEeCCCCCCC
Q 014285 239 -QAIHAVH--PHCSFILDAN---------E-----------------GYTSEEAVEVLGK-LNDMGVIPVLFEQPVHRDD 288 (427)
Q Consensus 239 -~~ir~~~--~~~~L~vDAN---------~-----------------~~s~~~A~~~l~~-L~~~~l~~~~iEqP~~~~d 288 (427)
++|.+++ +++.|.+|+- + .+|++|++++.+. +++|++ .|||||++++|
T Consensus 231 ~~Ai~~aGy~~~i~i~lD~Aasefy~~~~g~Y~l~f~~~~~~~~~~~~~t~~elid~y~~lle~ypI--~~IEDPl~~dD 308 (441)
T 3qtp_A 231 VEAIAKAGYTGKIEIAMDCAASEFYNEETKKYDLGKKIPADKKDPSLVKDVDGLIAEYVDYGKHYPI--ASIEDPFAEDD 308 (441)
T ss_dssp HHHHHHHTCTTTCEEEEECCGGGGEETTTTEEETTTTSCGGGCCGGGEECHHHHHHHHHHHHHHSCE--EEEESCSCTTC
T ss_pred HHHHHHcCCCceEEEccchhHHHhhhccCCeEEeecCCcccccccccccCHHHHHHHHHHHhhhcce--eeecCCCChHH
Confidence 4666665 6899999983 1 2578999999887 688986 69999999999
Q ss_pred hhhHHHHHHhhccccC-CeEEecCC-CCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEccc-Cc
Q 014285 289 WSGLHDVSNFARDTYG-ISVVADES-CRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGM-IE 364 (427)
Q Consensus 289 ~~~~~~L~~~~r~~~~-iPIa~dE~-~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~-~e 364 (427)
|+++++|++ +++ +||++||. +.++.+++++++.++++++++|++++| +|++++++++|+++|+++|++++ .|
T Consensus 309 ~eg~a~Lt~----~lg~i~IvGDEl~vTn~~~i~~~Ie~~a~n~IlIKvnqiGGITEalkaa~lA~~~G~~vmvsHrsgE 384 (441)
T 3qtp_A 309 WAAWNKFTV----EHGNFQIVGDDLLVTNPARVQMAMDKNACNSVLIKVNQIGTLTETFKTIKMAQEKGWGVMASHRSGE 384 (441)
T ss_dssp HHHHHHHHH----HTTTSEEEESTTTTTCHHHHHHHHHHTCCSEEEECGGGTCCHHHHHHHHHHHHHTTCEEEEECCSSC
T ss_pred HHHHHHHHH----hcCCceEEeccccccCHHHHHHHHHcCCCCEEEecccccccHHHHHHHHHHHHHcCCeEEEeCCCCC
Confidence 999999997 564 99999997 678999999999999999999999998 99999999999999999998764 48
Q ss_pred hhHHHHHHHHHHhhcCCc
Q 014285 365 TRLATGFALHLAAGLGCI 382 (427)
Q Consensus 365 s~ig~~a~~hlaaal~~~ 382 (427)
+..+. .++|+.++++.
T Consensus 385 TeDt~--iAdLAVal~~g 400 (441)
T 3qtp_A 385 TEDTF--IADLVVGLNCK 400 (441)
T ss_dssp CSCCH--HHHHHHHTTCE
T ss_pred ccHhH--HHHHHHHhCCC
Confidence 76554 45666666543
|
| >3otr_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel, TIM barrel; 2.75A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.4e-24 Score=212.87 Aligned_cols=279 Identities=23% Similarity=0.306 Sum_probs=199.8
Q ss_pred eeEEEEEEEEcCCceEEEEeecCC----------------CCCc-chHHHHHHHHH-HhhHhcCCCCCCHHHHHHHHHHH
Q 014285 93 VENVAIRVELSNGCVGWGEVAVVP----------------LVTG-DQTKALVKVRE-ACQFLRQSPPTTLNFALDEIARI 154 (427)
Q Consensus 93 ~~~vlV~v~t~~G~~G~GE~~~~~----------------~~s~-~~~~~~~~~~~-~~~~l~g~~~~~~~~~~~~l~~~ 154 (427)
.++|-|+|.|++|.. .+-+.... .|.+ ....++..+++ +.|.|+|.++.+...+.+.|.+.
T Consensus 18 npTvEv~v~~~~G~~-ra~vPsGaStG~~Ea~elrD~d~~~y~Gkgv~kAv~~vn~~Iap~Lig~d~~dQ~~iD~~m~~~ 96 (452)
T 3otr_A 18 NPTIEVDVSTEGGVF-RAAVPSGASTGIYEALELRDKDPKRYLGKGVLNAVEIVRQEIKPALLGKDPCDQKGIDMLMVEQ 96 (452)
T ss_dssp CEEEEEEEEETTEEE-EEECCCCBSSCSSSCBCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHTTCCTTCHHHHHHHHHHT
T ss_pred CEEEEEEEEECCccE-EEeccccCCCCcceEEeecCCCcccccCccHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHH
Confidence 578899999998764 33332110 1222 23345566655 78999999999999999988733
Q ss_pred CCC----------ChhhhHHHHHHHHHHHHHHhhCCCChhhhhC---CCC---Cceeeeee-------------------
Q 014285 155 LPG----------SEFASVRAGVEMALIDAVANSIDIPLWRLFG---GAS---NSLSTAIT------------------- 199 (427)
Q Consensus 155 ~~g----------~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llg---g~~---~~ip~~~~------------------- 199 (427)
+.| ....+++.|+.+|+..+.|...|+|||+++| |.. ..+|+...
T Consensus 97 lDgT~n~~~~~ks~lGaNail~vSlAvakAaA~~~~~PLy~yi~~l~g~~~~~~~lPvP~~nvinGG~ha~n~l~~QEfm 176 (452)
T 3otr_A 97 LDGTKNEWGYSKSKLGANAILGVSIACCRAGAASKGLPLYKYIATLAGKTIDKMVMPVPFFNVINGGEHAGNGLALQEFL 176 (452)
T ss_dssp TTCCEETTEECCTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTCCSSSEEECEECEEEEECGGGCSSSCCSSEEE
T ss_pred hcCCCCcccccccccCcchhhHHHHHHHHHHHHhcCCcHHHHHHHhcCCCCcceecccceEEEecCcccCCCCCCcCeEE
Confidence 333 2336789999999999999999999999998 433 23454211
Q ss_pred -ec--CCCHHHHHHH-------HHHHhhc--CCcEEEEecc------CCc---hhhHHHH-HHHHHhC--CCcEEEEeCC
Q 014285 200 -IP--AVSPAEASEL-------ASKYCKL--GFSTLKLNVG------RNI---TADFDVL-QAIHAVH--PHCSFILDAN 255 (427)
Q Consensus 200 -i~--~~~~~~~~~~-------~~~~~~~--Gf~~iKlKiG------~~~---~~d~~~l-~~ir~~~--~~~~L~vDAN 255 (427)
+| ..++.+..+. .++.++. |... ..+| +++ ++-++.| ++|.+++ +++.|.+|+-
T Consensus 177 i~P~ga~sf~ealr~g~evyh~Lk~vl~~k~g~~~--t~vgDEGgfap~~~~~~eaL~ll~~Ai~~aGy~~~i~i~lD~A 254 (452)
T 3otr_A 177 IAPVGAPNIREAIRYGSETYHHLKNVIKNKYGLDA--TNVGDEGGFAPNVATAEEALNLLVEAIKAAGYEGKIKIAFDAA 254 (452)
T ss_dssp EECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGG--GCBCTTSCBCCCCCSHHHHHHHHHHHHHHHTCTTTSEEEEECC
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCcc--cccccccccCCCCCCHHHHHHHHHHHHHHcCCCceEEEccccc
Confidence 12 1245443221 2222221 4210 1233 233 3445554 4666665 5899999872
Q ss_pred C------------------------CCCHHHHHHHHHH-hhhCCCCCceEeCCCCCCChhhHHHHHHhhccccC--CeEE
Q 014285 256 E------------------------GYTSEEAVEVLGK-LNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG--ISVV 308 (427)
Q Consensus 256 ~------------------------~~s~~~A~~~l~~-L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~--iPIa 308 (427)
. .+|++|++++++. +++|++ .|||||++++||+++++|++ +++ +||+
T Consensus 255 asefy~~~~g~Y~l~fk~~~~~~~~~~t~~Elid~y~~lle~ypI--v~IEDPl~~dD~eg~a~Lt~----~lg~~iqIv 328 (452)
T 3otr_A 255 ASEFYKQDEKKYDLDYKCKTKNASKHLTGEKLKEVYEGWLKKYPI--ISVEDPFDQDDFASFSAFTK----DVGEKTQVI 328 (452)
T ss_dssp GGGGEETTTTEEETTTTCSSCCGGGEECHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHHHHHH----HHTTTSEEE
T ss_pred hHhheeccCCeEEeeccCCCCcccccccHHHHHHHHHHHHhhhCc--eEEecCCChhhHHHHHHHHH----hhCCCeEEE
Confidence 1 2578999999977 688986 69999999999999999987 455 9999
Q ss_pred ecCC-CCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccC-chhHHHHHHHHHHhhcCCc
Q 014285 309 ADES-CRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAAGLGCI 382 (427)
Q Consensus 309 ~dE~-~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hlaaal~~~ 382 (427)
+||. ++++.+++++++.++++++++|++++| +|++++++++|+++|+++|+++.. |+.-. ..++||.+++++
T Consensus 329 GDDl~vTn~~~i~~~Ie~~a~n~IlIKvnQIGgITEalka~~lA~~~G~~vmvshrSGETeD~--~iAdLaVgl~~g 403 (452)
T 3otr_A 329 GDDILVTNILRIEKALKDKACNCLLLKVNQIGSVTEAIEACLLAQKSGWGVQVSHRSGETEDS--FIADLVVGLRCG 403 (452)
T ss_dssp ESTTTTTCHHHHHHHHHHTCCSEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSSCCSCC--HHHHHHHHTTCC
T ss_pred eCccccCCHHHHHHHHhcCCCCEEEeeccccccHHHHHHHHHHHHHcCCeEEEeCCCCCCchh--HHHHHHHHcCCC
Confidence 9997 678999999999999999999999998 999999999999999999998743 66433 466888877664
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.6e-05 Score=78.70 Aligned_cols=120 Identities=18% Similarity=0.250 Sum_probs=91.7
Q ss_pred HHHHHHHhhcCCcEEEEeccC---------------------Cchh----hHHHHHHHHHh-CCC--cEEEEeCC----C
Q 014285 209 SELASKYCKLGFSTLKLNVGR---------------------NITA----DFDVLQAIHAV-HPH--CSFILDAN----E 256 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG~---------------------~~~~----d~~~l~~ir~~-~~~--~~L~vDAN----~ 256 (427)
.+.++..++.||..|.+..+. +++. -++.+++||+. +++ +-+++.++ +
T Consensus 155 ~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~~~~~~ 234 (349)
T 3hgj_A 155 VEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATDWGEG 234 (349)
T ss_dssp HHHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCCSTT
T ss_pred HHHHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEeccccccCC
Confidence 445666778999999999863 1121 26678999984 666 56677776 4
Q ss_pred CCCHHHHHHHHHHhhhCCCCCceEeCCC------------CCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHH
Q 014285 257 GYTSEEAVEVLGKLNDMGVIPVLFEQPV------------HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQ 324 (427)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~~~iEqP~------------~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~ 324 (427)
+|+.+++.++++.|++.++. ||+-.. +..+++..+++++ .+++||.....+.+.++.+++++
T Consensus 235 g~~~~~~~~la~~L~~~Gvd--~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~----~~~iPVi~~Ggi~t~e~a~~~l~ 308 (349)
T 3hgj_A 235 GWSLEDTLAFARRLKELGVD--LLDCSSGGVVLRVRIPLAPGFQVPFADAVRK----RVGLRTGAVGLITTPEQAETLLQ 308 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCC--EEEEECCCSCSSSCCCCCTTTTHHHHHHHHH----HHCCEEEECSSCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCC--EEEEecCCcCcccccCCCccccHHHHHHHHH----HcCceEEEECCCCCHHHHHHHHH
Confidence 89999999999999999974 888653 1124444555654 57899999999999999999999
Q ss_pred cCCCcEEEeC
Q 014285 325 ENLASVVNIK 334 (427)
Q Consensus 325 ~~a~~~i~lk 334 (427)
.+.+|.|.+=
T Consensus 309 ~G~aD~V~iG 318 (349)
T 3hgj_A 309 AGSADLVLLG 318 (349)
T ss_dssp TTSCSEEEES
T ss_pred CCCceEEEec
Confidence 9989998763
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=4.4e-05 Score=75.18 Aligned_cols=122 Identities=13% Similarity=0.160 Sum_probs=91.6
Q ss_pred HHHHHHHHHhhcCCcEEEEeccC---------------------Cchh----hHHHHHHHHHhC-CCcEEEEeC----CC
Q 014285 207 EASELASKYCKLGFSTLKLNVGR---------------------NITA----DFDVLQAIHAVH-PHCSFILDA----NE 256 (427)
Q Consensus 207 ~~~~~~~~~~~~Gf~~iKlKiG~---------------------~~~~----d~~~l~~ir~~~-~~~~L~vDA----N~ 256 (427)
++.+.++..+++||..|+++.+. +++. -++.+++||+.. ..+.+++.+ ++
T Consensus 145 ~~~~aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v~~pv~vris~~~~~~~ 224 (338)
T 1z41_A 145 EFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDK 224 (338)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTT
T ss_pred HHHHHHHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHcCCcEEEEecCcccCCC
Confidence 34555677788999999999862 1111 267889999853 235555555 56
Q ss_pred CCCHHHHHHHHHHhhhCCCCCceEe--------C--CCCC-CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHc
Q 014285 257 GYTSEEAVEVLGKLNDMGVIPVLFE--------Q--PVHR-DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQE 325 (427)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~~~iE--------q--P~~~-~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~ 325 (427)
+|+.+++.++++.|++.++. ||+ + |..+ .+++..+++++ .+++||.....+.+.+++.++++.
T Consensus 225 g~~~~~~~~~a~~l~~~Gvd--~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~----~~~iPVi~~Ggi~s~~~a~~~l~~ 298 (338)
T 1z41_A 225 GLDIADHIGFAKWMKEQGVD--LIDCSSGALVHADINVFPGYQVSFAEKIRE----QADMATGAVGMITDGSMAEEILQN 298 (338)
T ss_dssp SCCHHHHHHHHHHHHHTTCC--EEEEECCCSSCCCCCCCTTTTHHHHHHHHH----HHCCEEEECSSCCSHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCC--EEEEecCccccCCCCCCccchHHHHHHHHH----HCCCCEEEECCCCCHHHHHHHHHc
Confidence 89999999999999999975 787 3 3333 24566666764 578999999999999999999999
Q ss_pred CCCcEEEeC
Q 014285 326 NLASVVNIK 334 (427)
Q Consensus 326 ~a~~~i~lk 334 (427)
+.+|.|.+-
T Consensus 299 G~aD~V~iG 307 (338)
T 1z41_A 299 GRADLIFIG 307 (338)
T ss_dssp TSCSEEEEC
T ss_pred CCceEEeec
Confidence 989998763
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=5.2e-05 Score=81.37 Aligned_cols=121 Identities=12% Similarity=0.169 Sum_probs=90.2
Q ss_pred HHHHHHHHHhhcCCcEEEEeccC---------------------Cchh----hHHHHHHHHH-hCCCcEE--EEeC----
Q 014285 207 EASELASKYCKLGFSTLKLNVGR---------------------NITA----DFDVLQAIHA-VHPHCSF--ILDA---- 254 (427)
Q Consensus 207 ~~~~~~~~~~~~Gf~~iKlKiG~---------------------~~~~----d~~~l~~ir~-~~~~~~L--~vDA---- 254 (427)
++.+.++..+++||..++++.+. +++. -++.+++||+ +++++.+ ++.+
T Consensus 142 ~~~~aA~~a~~aGfd~veih~~~gyl~~qFlsp~~n~r~d~yGgs~~~r~r~~~eiv~avr~~vG~~~~v~vrls~~~~~ 221 (671)
T 1ps9_A 142 NFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLV 221 (671)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCS
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCcCcCCCcHHHHHHHHHHHHHHHHHHcCCCceEEEEECccccC
Confidence 44556777788999999998752 1222 3677899998 5777554 4444
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCceEe-------CCCCC--------CChhhHHHHHHhhccccCCeEEecCCCCCHHHH
Q 014285 255 NEGYTSEEAVEVLGKLNDMGVIPVLFE-------QPVHR--------DDWSGLHDVSNFARDTYGISVVADESCRSLNDV 319 (427)
Q Consensus 255 N~~~s~~~A~~~l~~L~~~~l~~~~iE-------qP~~~--------~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~ 319 (427)
+++|+.+++.++++.|++.++. ||+ ++.+. ..++..++++ +.+++||+....+.+.+++
T Consensus 222 ~~g~~~~~~~~~a~~l~~~g~d--~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~iPvi~~Ggi~~~~~a 295 (671)
T 1ps9_A 222 EDGGTFAETVELAQAIEAAGAT--IINTGIGWHEARIPTIATPVPRGAFSWVTRKLK----GHVSLPLVTTNRINDPQVA 295 (671)
T ss_dssp TTCCCHHHHHHHHHHHHHHTCS--EEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHT----TSCSSCEEECSSCCSHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCCC--EEEcCCCccccccccccccCCcchHHHHHHHHH----HhcCceEEEeCCCCCHHHH
Confidence 4689999999999999999874 884 43331 1234444554 4789999999999999999
Q ss_pred HHHHHcCCCcEEEe
Q 014285 320 QKVMQENLASVVNI 333 (427)
Q Consensus 320 ~~ll~~~a~~~i~l 333 (427)
.++++.+.+|.|.+
T Consensus 296 ~~~l~~g~aD~V~~ 309 (671)
T 1ps9_A 296 DDILSRGDADMVSM 309 (671)
T ss_dssp HHHHHTTSCSEEEE
T ss_pred HHHHHcCCCCEEEe
Confidence 99999998999875
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=5.5e-05 Score=75.62 Aligned_cols=119 Identities=12% Similarity=0.143 Sum_probs=89.2
Q ss_pred HHHHHHHHh-hcCCcEEEEeccC-----------------------Cchh----hHHHHHHHHH-hCCC-cEEEEeCC--
Q 014285 208 ASELASKYC-KLGFSTLKLNVGR-----------------------NITA----DFDVLQAIHA-VHPH-CSFILDAN-- 255 (427)
Q Consensus 208 ~~~~~~~~~-~~Gf~~iKlKiG~-----------------------~~~~----d~~~l~~ir~-~~~~-~~L~vDAN-- 255 (427)
+.+.++.++ ++||..|+++.+. +++. -++.+++||+ ++++ +-+++.++
T Consensus 176 f~~AA~~a~~~aGfDgVEih~a~GYLl~QFlsp~~N~R~~D~yGG~slenR~r~~~eiv~aVr~avg~~~v~vRis~~~~ 255 (379)
T 3aty_A 176 FVEGAKNAIFKAGFDGVEIHGANGYLLDAFFRESSNKRQSGPYAGTTIDTRCQLIYDVTKSVCDAVGSDRVGLRISPLNG 255 (379)
T ss_dssp HHHHHHHHHHTSCCSEEEEEECTTSHHHHHHSTTTCCCCSSTTCTTSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCC
T ss_pred HHHHHHHHHHhcCCCEEEEcCcCchHHhhccCCCCCccccCCCCccChhhhHHHHHHHHHHHHHhcCCCeEEEEECcccc
Confidence 345566778 8999999998752 1221 2566899998 4654 66666664
Q ss_pred -----CCCCHHHHHHHHHHhhhCCCCCceEeCCCCC-----CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHc
Q 014285 256 -----EGYTSEEAVEVLGKLNDMGVIPVLFEQPVHR-----DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQE 325 (427)
Q Consensus 256 -----~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~-----~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~ 325 (427)
++|+.+++.++++.|+++++. |||.+... ...+ .++++ +.+++||++.+.+ +.+++.++++.
T Consensus 256 ~~~~~~~~~~~~~~~la~~l~~~Gvd--~i~v~~~~~~~~~~~~~-~~~ir----~~~~iPvi~~G~i-t~~~a~~~l~~ 327 (379)
T 3aty_A 256 VHGMIDSNPEALTKHLCKKIEPLSLA--YLHYLRGDMVNQQIGDV-VAWVR----GSYSGVKISNLRY-DFEEADQQIRE 327 (379)
T ss_dssp GGGCCCSCHHHHHHHHHHHHGGGCCS--EEEEECSCTTSCCCCCH-HHHHH----TTCCSCEEEESSC-CHHHHHHHHHT
T ss_pred cccCCCCCCHHHHHHHHHHHHHhCCC--EEEEcCCCcCCCCccHH-HHHHH----HHCCCcEEEECCC-CHHHHHHHHHc
Confidence 478899999999999999974 99987631 1123 55555 4688999999998 99999999999
Q ss_pred CCCcEEEeC
Q 014285 326 NLASVVNIK 334 (427)
Q Consensus 326 ~a~~~i~lk 334 (427)
+.+|+|.+=
T Consensus 328 g~aD~V~ig 336 (379)
T 3aty_A 328 GKVDAVAFG 336 (379)
T ss_dssp TSCSEEEES
T ss_pred CCCeEEEec
Confidence 999998763
|
| >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=4.1e-05 Score=76.45 Aligned_cols=121 Identities=12% Similarity=0.185 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhhcCCcEEEEeccC---------------------Cchh----hHHHHHHHHH-hCCC-cEEEEeCC---
Q 014285 206 AEASELASKYCKLGFSTLKLNVGR---------------------NITA----DFDVLQAIHA-VHPH-CSFILDAN--- 255 (427)
Q Consensus 206 ~~~~~~~~~~~~~Gf~~iKlKiG~---------------------~~~~----d~~~l~~ir~-~~~~-~~L~vDAN--- 255 (427)
+++.+.++..+++||..|++..+. +++. -++.+++||+ ++++ +.+++-++
T Consensus 167 ~~f~~AA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~V~vrls~~~~~ 246 (376)
T 1icp_A 167 NEFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHY 246 (376)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCT
T ss_pred HHHHHHHHHHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 445566777788999999999862 1222 3667899998 5654 44555433
Q ss_pred ----CCCCHHHHHHHHHHhhhCCCCCceEeCCCCC--------CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHH
Q 014285 256 ----EGYTSEEAVEVLGKLNDMGVIPVLFEQPVHR--------DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVM 323 (427)
Q Consensus 256 ----~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~--------~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll 323 (427)
+.++.+++.++++.|+++++. |||-+... .+++..+++++ ..++||++...+ +.+++++++
T Consensus 247 ~g~~~~~~~~~~~~la~~le~~Gvd--~i~v~~~~~~~~~~~~~~~~~~~~vr~----~~~iPvi~~G~i-~~~~a~~~l 319 (376)
T 1icp_A 247 NEAGDTNPTALGLYMVESLNKYDLA--YCHVVEPRMKTAWEKIECTESLVPMRK----AYKGTFIVAGGY-DREDGNRAL 319 (376)
T ss_dssp TTCCCSCHHHHHHHHHHHHGGGCCS--EEEEECCSCCC------CCCCSHHHHH----HCCSCEEEESSC-CHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCC--EEEEcCCcccCCCCccccHHHHHHHHH----HcCCCEEEeCCC-CHHHHHHHH
Confidence 346788899999999999974 88875431 23444556654 678999999998 899999999
Q ss_pred HcCCCcEEEe
Q 014285 324 QENLASVVNI 333 (427)
Q Consensus 324 ~~~a~~~i~l 333 (427)
+.+.+|+|.+
T Consensus 320 ~~g~aD~V~~ 329 (376)
T 1icp_A 320 IEDRADLVAY 329 (376)
T ss_dssp HTTSCSEEEE
T ss_pred HCCCCcEEee
Confidence 9999999876
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=97.93 E-value=8.8e-05 Score=73.74 Aligned_cols=121 Identities=9% Similarity=0.166 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhhcCCcEEEEeccC---------------------Cch----hhHHHHHHHHHh-CCC-cEEEEeCC---
Q 014285 206 AEASELASKYCKLGFSTLKLNVGR---------------------NIT----ADFDVLQAIHAV-HPH-CSFILDAN--- 255 (427)
Q Consensus 206 ~~~~~~~~~~~~~Gf~~iKlKiG~---------------------~~~----~d~~~l~~ir~~-~~~-~~L~vDAN--- 255 (427)
+++.+.++..+++||..|++..+. +++ --++.+++||+. +++ +.+++-++
T Consensus 161 ~~f~~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v~vrls~~~~~ 240 (364)
T 1vyr_A 161 NDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTF 240 (364)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCB
T ss_pred HHHHHHHHHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCCcEEEEEcccccc
Confidence 445566777788999999998752 111 235678999985 554 44555444
Q ss_pred -----CCCCHHHHHHHHHHhhhCCCCCceEeCCCC------CCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHH
Q 014285 256 -----EGYTSEEAVEVLGKLNDMGVIPVLFEQPVH------RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQ 324 (427)
Q Consensus 256 -----~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~------~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~ 324 (427)
+.++.+++.++++.|++.++. ||+-... ..+++..+++++ .+++||++...+ +.+++.++++
T Consensus 241 ~~~~~~~~~~~~~~~~a~~l~~~G~d--~i~v~~~~~~~~~~~~~~~~~~v~~----~~~iPvi~~Ggi-t~~~a~~~l~ 313 (364)
T 1vyr_A 241 QNVDNGPNEEADALYLIEELAKRGIA--YLHMSETDLAGGKPYSEAFRQKVRE----RFHGVIIGAGAY-TAEKAEDLIG 313 (364)
T ss_dssp TTBCCCTTHHHHHHHHHHHHHHTTCS--EEEEECCBTTBCCCCCHHHHHHHHH----HCCSEEEEESSC-CHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCCC--EEEEecCcccCCCcccHHHHHHHHH----HCCCCEEEECCc-CHHHHHHHHH
Confidence 356888999999999999974 8887652 234555566654 688999999998 8999999999
Q ss_pred cCCCcEEEe
Q 014285 325 ENLASVVNI 333 (427)
Q Consensus 325 ~~a~~~i~l 333 (427)
.+.+|.|.+
T Consensus 314 ~g~aD~V~~ 322 (364)
T 1vyr_A 314 KGLIDAVAF 322 (364)
T ss_dssp TTSCSEEEE
T ss_pred CCCccEEEE
Confidence 998998776
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0003 Score=69.27 Aligned_cols=118 Identities=14% Similarity=0.189 Sum_probs=86.7
Q ss_pred HHHHHHHhhcCCcEEEEeccC---------------------Cchh----hHHHHHHHHHh-CCC--cEEEEeCC----C
Q 014285 209 SELASKYCKLGFSTLKLNVGR---------------------NITA----DFDVLQAIHAV-HPH--CSFILDAN----E 256 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG~---------------------~~~~----d~~~l~~ir~~-~~~--~~L~vDAN----~ 256 (427)
.+.++..++.||..|.+..+. +++. -++.+++||+. +++ +.+++-++ +
T Consensus 146 ~~AA~~a~~aGfDgVEih~ahGYLl~qFlsp~~N~R~D~yGGslenR~rf~~eiv~aVr~avg~d~pv~vRls~~~~~~~ 225 (343)
T 3kru_A 146 GEAAKRANLAGYDVVEIHAAHGYLIHEFLSPLSNKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSADDYMEG 225 (343)
T ss_dssp HHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHTSCTTSCEEEEEECCCSSTT
T ss_pred HHHHhhccccCCceEEEecccchhHHHhhcccccccchhhccchHhHHHHHHHHHHHHHhcCCccCCeEEEeechhhhcc
Confidence 344666778999999999431 1222 26788999994 666 45555554 4
Q ss_pred CCCHHHHHHHHHHhhhCCCCCceEeCC----------CCC-CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHc
Q 014285 257 GYTSEEAVEVLGKLNDMGVIPVLFEQP----------VHR-DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQE 325 (427)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~~~iEqP----------~~~-~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~ 325 (427)
+|+.+++.++++.|++. +. ||+-. ..+ .+++..+++++ ..++||.+...+.+.++.+++++.
T Consensus 226 g~~~~~~~~~a~~l~~~-vd--~i~vs~g~~~~~~~~~~~~~~~~~~~~ir~----~~~iPVi~~Ggi~t~e~Ae~~l~~ 298 (343)
T 3kru_A 226 GINIDMMVEYINMIKDK-VD--LIDVSSGGLLNVDINLYPGYQVKYAETIKK----RCNIKTSAVGLITTQELAEEILSN 298 (343)
T ss_dssp SCCHHHHHHHHHHHTTT-CS--EEEEECCCSSCCCCCCCTTTTHHHHHHHHH----HHTCEEEEESSCCCHHHHHHHHHT
T ss_pred CccHHHHHHHHHHhhcc-cc--EEeccCCceEeeeecccCceeehHHHHHHH----hcCcccceeeeeeHHHHHHHHHhc
Confidence 78999999999999998 74 78763 112 23444455554 678999999999999999999999
Q ss_pred CCCcEEEe
Q 014285 326 NLASVVNI 333 (427)
Q Consensus 326 ~a~~~i~l 333 (427)
+.+|.|.+
T Consensus 299 G~aD~V~i 306 (343)
T 3kru_A 299 ERADLVAL 306 (343)
T ss_dssp TSCSEEEE
T ss_pred hhhHHHHH
Confidence 98998775
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00011 Score=73.09 Aligned_cols=119 Identities=17% Similarity=0.167 Sum_probs=87.2
Q ss_pred HHHHHHHhhcCCcEEEEeccC---------------------Cchh----hHHHHHHHHHh-CCC--cEEEEeCCC----
Q 014285 209 SELASKYCKLGFSTLKLNVGR---------------------NITA----DFDVLQAIHAV-HPH--CSFILDANE---- 256 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG~---------------------~~~~----d~~~l~~ir~~-~~~--~~L~vDAN~---- 256 (427)
.+.++..++.||..|.++.+. +++. -++.+++||+. +++ +-+++.++.
T Consensus 161 ~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~vRis~~~~~~~ 240 (363)
T 3l5l_A 161 VDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVLEYDGR 240 (363)
T ss_dssp HHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEEEEECSSSC
T ss_pred HHHHHHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEEEecchhcCCC
Confidence 344666778999999999752 1222 25678999984 666 455555542
Q ss_pred C-CCHHHHHHHHHHhhhCCCCCceEeCCC-----------CC-CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHH
Q 014285 257 G-YTSEEAVEVLGKLNDMGVIPVLFEQPV-----------HR-DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVM 323 (427)
Q Consensus 257 ~-~s~~~A~~~l~~L~~~~l~~~~iEqP~-----------~~-~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll 323 (427)
+ |+.+++.++++.|++.++. ||+-.. .+ .+++..+++++ .+++||.....+.+.++.++++
T Consensus 241 G~~~~~~~~~la~~L~~~Gvd--~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~----~~~iPVi~~GgI~s~e~a~~~l 314 (363)
T 3l5l_A 241 DEQTLEESIELARRFKAGGLD--LLSVSVGFTIPDTNIPWGPAFMGPIAERVRR----EAKLPVTSAWGFGTPQLAEAAL 314 (363)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC--EEEEEECCCSSCCCCCCCTTTTHHHHHHHHH----HHTCCEEECSSTTSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCC--EEEEecCccccccccCCCcchhHHHHHHHHH----HcCCcEEEeCCCCCHHHHHHHH
Confidence 4 8899999999999999975 887432 11 23444455554 5789999999999999999999
Q ss_pred HcCCCcEEEe
Q 014285 324 QENLASVVNI 333 (427)
Q Consensus 324 ~~~a~~~i~l 333 (427)
+.+.+|.|.+
T Consensus 315 ~~G~aD~V~i 324 (363)
T 3l5l_A 315 QANQLDLVSV 324 (363)
T ss_dssp HTTSCSEEEC
T ss_pred HCCCccEEEe
Confidence 9998998775
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00093 Score=66.65 Aligned_cols=121 Identities=13% Similarity=0.179 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhhcCCcEEEEeccC---------------------Cchh----hHHHHHHHHH-hCCC-cEEEEeCC---
Q 014285 206 AEASELASKYCKLGFSTLKLNVGR---------------------NITA----DFDVLQAIHA-VHPH-CSFILDAN--- 255 (427)
Q Consensus 206 ~~~~~~~~~~~~~Gf~~iKlKiG~---------------------~~~~----d~~~l~~ir~-~~~~-~~L~vDAN--- 255 (427)
+++.+.|+..+++||..|+|..+. +++. -++.+++||+ ++++ +.+++-++
T Consensus 166 ~~f~~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~v~vrls~~~~~ 245 (377)
T 2r14_A 166 EDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLEL 245 (377)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCC
T ss_pred HHHHHHHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHcCCCcEEEEecccccc
Confidence 344556667778999999998752 1222 3567899998 4654 55565443
Q ss_pred ----CCCCHHHHHHHHHHhhhCCCCCceEeCCCC------C-CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHH
Q 014285 256 ----EGYTSEEAVEVLGKLNDMGVIPVLFEQPVH------R-DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQ 324 (427)
Q Consensus 256 ----~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~------~-~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~ 324 (427)
++|+.+++.++++.|++.++. ||+-.-. . .+++..+++++ ..++||.+...+ +.++..++++
T Consensus 246 ~~~~~~~~~~~~~~la~~le~~Gvd--~i~v~~~~~~~~~~~~~~~~~~~ik~----~~~iPvi~~Ggi-~~~~a~~~l~ 318 (377)
T 2r14_A 246 FGLTDDEPEAMAFYLAGELDRRGLA--YLHFNEPDWIGGDITYPEGFREQMRQ----RFKGGLIYCGNY-DAGRAQARLD 318 (377)
T ss_dssp TTCCCSCHHHHHHHHHHHHHHTTCS--EEEEECCC------CCCTTHHHHHHH----HCCSEEEEESSC-CHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCC--EEEEeCCcccCCCCcchHHHHHHHHH----HCCCCEEEECCC-CHHHHHHHHH
Confidence 467899999999999999874 7775321 1 14455566654 678999998888 6999999999
Q ss_pred cCCCcEEEe
Q 014285 325 ENLASVVNI 333 (427)
Q Consensus 325 ~~a~~~i~l 333 (427)
.+.+|.|.+
T Consensus 319 ~g~aD~V~i 327 (377)
T 2r14_A 319 DNTADAVAF 327 (377)
T ss_dssp TTSCSEEEE
T ss_pred CCCceEEee
Confidence 998998776
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0016 Score=64.66 Aligned_cols=122 Identities=11% Similarity=0.135 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhhcCCcEEEEeccC---------------------Cch----hhHHHHHHHHH-hCCC-cEEEEeCC---
Q 014285 206 AEASELASKYCKLGFSTLKLNVGR---------------------NIT----ADFDVLQAIHA-VHPH-CSFILDAN--- 255 (427)
Q Consensus 206 ~~~~~~~~~~~~~Gf~~iKlKiG~---------------------~~~----~d~~~l~~ir~-~~~~-~~L~vDAN--- 255 (427)
+++.+.++..++.||..|+|..+. +++ --++.+++||+ ++++ +-+++-++
T Consensus 161 ~~f~~aA~~a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~pv~vris~~~~~ 240 (365)
T 2gou_A 161 ADYRQAALNAMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVRLAPLTTL 240 (365)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECSSCCT
T ss_pred HHHHHHHHHHHHcCCCEEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHcCCCcEEEEEcccccc
Confidence 344555666778999999998752 111 23567899998 4654 55555553
Q ss_pred ----CCCCHHHHHHHHHHhhhCCCCCceEeCCCC------CCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHc
Q 014285 256 ----EGYTSEEAVEVLGKLNDMGVIPVLFEQPVH------RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQE 325 (427)
Q Consensus 256 ----~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~------~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~ 325 (427)
++++.+++.++++.|++.++. ||+-.-. ...++..+++++ .+++||.+...+ +.++..++++.
T Consensus 241 ~~~~~~~~~~~~~~~a~~l~~~G~d--~i~v~~~~~~~~~~~~~~~~~~i~~----~~~iPvi~~Ggi-~~~~a~~~l~~ 313 (365)
T 2gou_A 241 NGTVDADPILTYTAAAALLNKHRIV--YLHIAEVDWDDAPDTPVSFKRALRE----AYQGVLIYAGRY-NAEKAEQAIND 313 (365)
T ss_dssp TSCCCSSHHHHHHHHHHHHHHTTCS--EEEEECCBTTBCCCCCHHHHHHHHH----HCCSEEEEESSC-CHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCC--EEEEeCCCcCCCCCccHHHHHHHHH----HCCCcEEEeCCC-CHHHHHHHHHC
Confidence 457889999999999999874 7875432 113444455554 678999999888 89999999999
Q ss_pred CCCcEEEeC
Q 014285 326 NLASVVNIK 334 (427)
Q Consensus 326 ~a~~~i~lk 334 (427)
+.+|.|.+=
T Consensus 314 g~aD~V~ig 322 (365)
T 2gou_A 314 GLADMIGFG 322 (365)
T ss_dssp TSCSEEECC
T ss_pred CCcceehhc
Confidence 989988763
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0028 Score=62.22 Aligned_cols=119 Identities=16% Similarity=0.159 Sum_probs=87.3
Q ss_pred HHHHHHHhhcCCcEEEEeccC---------------------Cchhh----HHHHHHHHHhC-CCcEEEEeCC----CCC
Q 014285 209 SELASKYCKLGFSTLKLNVGR---------------------NITAD----FDVLQAIHAVH-PHCSFILDAN----EGY 258 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG~---------------------~~~~d----~~~l~~ir~~~-~~~~L~vDAN----~~~ 258 (427)
.+.++..++.||..|.+..+. +++.. ++.+++||+.- .-+.+++-++ ++|
T Consensus 147 ~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v~~pv~vRls~~~~~~~g~ 226 (340)
T 3gr7_A 147 QNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVWDGPLFVRISASDYHPDGL 226 (340)
T ss_dssp HHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEESCCCSTTSC
T ss_pred HHHHHHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhcCCceEEEeccccccCCCC
Confidence 345666678899999999872 12222 56788999853 2366677665 578
Q ss_pred CHHHHHHHHHHhhhCCCCCceEeC--------CC--CC-CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCC
Q 014285 259 TSEEAVEVLGKLNDMGVIPVLFEQ--------PV--HR-DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL 327 (427)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEq--------P~--~~-~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a 327 (427)
+.+++.++++.|++.++. ||+- +. .+ .+++..+++++ ..++||...-.+.+.++.+++++.+.
T Consensus 227 ~~~~~~~la~~L~~~Gvd--~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~----~~~iPVi~~GgI~s~e~a~~~L~~G~ 300 (340)
T 3gr7_A 227 TAKDYVPYAKRMKEQGVD--LVDVSSGAIVPARMNVYPGYQVPFAELIRR----EADIPTGAVGLITSGWQAEEILQNGR 300 (340)
T ss_dssp CGGGHHHHHHHHHHTTCC--EEEEECCCSSCCCCCCCTTTTHHHHHHHHH----HTTCCEEEESSCCCHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHcCCC--EEEEecCCccCCCCCCCccccHHHHHHHHH----HcCCcEEeeCCCCCHHHHHHHHHCCC
Confidence 999999999999999874 6653 11 11 23444455554 67899999999999999999999998
Q ss_pred CcEEEe
Q 014285 328 ASVVNI 333 (427)
Q Consensus 328 ~~~i~l 333 (427)
+|.|.+
T Consensus 301 aD~V~i 306 (340)
T 3gr7_A 301 ADLVFL 306 (340)
T ss_dssp CSEEEE
T ss_pred eeEEEe
Confidence 998876
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0029 Score=62.64 Aligned_cols=119 Identities=13% Similarity=0.107 Sum_probs=84.9
Q ss_pred HHHHHHHHhhcCCcEEEEeccC------------C---------ch----hhHHHHHHHHH-hCCC-cEEEEeCCC----
Q 014285 208 ASELASKYCKLGFSTLKLNVGR------------N---------IT----ADFDVLQAIHA-VHPH-CSFILDANE---- 256 (427)
Q Consensus 208 ~~~~~~~~~~~Gf~~iKlKiG~------------~---------~~----~d~~~l~~ir~-~~~~-~~L~vDAN~---- 256 (427)
+.+.++..++.||..|+|..+. + ++ --++.+++||+ ++++ +.+|+-++.
T Consensus 163 f~~AA~~A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGGslenR~rf~~evv~aVr~~vg~~~v~vRls~~~~~~g 242 (361)
T 3gka_A 163 FRRGAENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAIDVWSAARVGVHLAPRGDAHT 242 (361)
T ss_dssp HHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHSHHHHHHHHHHHHHHCGGGEEEEECTTCCSSS
T ss_pred HHHHHHHHHHcCCCEEEECCcCccHHHhccCcccccccCCCCCChhhcHHHHHHHHHHHHHHcCCCeEEEecccccccCC
Confidence 3455677788999999999863 1 11 12678899998 4654 566666642
Q ss_pred ---CCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEe
Q 014285 257 ---GYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (427)
Q Consensus 257 ---~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~l 333 (427)
.++.+++.++++.|++.++. ||+-.-.....+..+++++ ..++||.....+ +.++.+++++.+.+|.|.+
T Consensus 243 ~~~~~~~~~~~~la~~l~~~Gvd--~i~v~~~~~~~~~~~~ik~----~~~iPvi~~Ggi-t~e~a~~~l~~G~aD~V~i 315 (361)
T 3gka_A 243 MGDSDPAATFGHVARELGRRRIA--FLFARESFGGDAIGQQLKA----AFGGPFIVNENF-TLDSAQAALDAGQADAVAW 315 (361)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCS--EEEEECCCSTTCCHHHHHH----HHCSCEEEESSC-CHHHHHHHHHTTSCSEEEE
T ss_pred CCCCCcHHHHHHHHHHHHHcCCC--EEEECCCCCCHHHHHHHHH----HcCCCEEEeCCC-CHHHHHHHHHcCCccEEEE
Confidence 23467899999999999974 8886554311122344543 578899888887 9999999999998998765
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0043 Score=61.46 Aligned_cols=118 Identities=14% Similarity=0.115 Sum_probs=83.0
Q ss_pred HHHHHHHhhcCCcEEEEeccC---------------------Cchh----hHHHHHHHHH-hCCC-cEEEEeCCCC----
Q 014285 209 SELASKYCKLGFSTLKLNVGR---------------------NITA----DFDVLQAIHA-VHPH-CSFILDANEG---- 257 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG~---------------------~~~~----d~~~l~~ir~-~~~~-~~L~vDAN~~---- 257 (427)
.+.++..++.||..|.|..+. +++. -++.+++||+ ++++ +.+++-++..
T Consensus 156 ~~AA~~a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGGslenR~rf~~eiv~aVr~~vg~~~v~vRls~~~~~~g~ 235 (362)
T 4ab4_A 156 RSGAENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVWGAQRVGVHLAPRADAHDM 235 (362)
T ss_dssp HHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSC
T ss_pred HHHHHHHHHcCCCEEEECCcCccHHHhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHhcCCCceEEEeecccccccc
Confidence 345666778999999999863 1121 2567899998 4654 5566655432
Q ss_pred ---CCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEe
Q 014285 258 ---YTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (427)
Q Consensus 258 ---~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~l 333 (427)
++.+++.++++.|++.++. ||+-.-.....+..+++++ ..++||.....+ +.++.+++++.+.+|.|.+
T Consensus 236 ~~~~~~~~~~~la~~l~~~Gvd--~i~v~~~~~~~~~~~~ik~----~~~iPvi~~Ggi-t~e~a~~~l~~g~aD~V~i 307 (362)
T 4ab4_A 236 GDADRAETFTYVARELGKRGIA--FICSREREADDSIGPLIKE----AFGGPYIVNERF-DKASANAALASGKADAVAF 307 (362)
T ss_dssp CCTTHHHHHHHHHHHHHHTTCS--EEEEECCCCTTCCHHHHHH----HHCSCEEEESSC-CHHHHHHHHHTTSCSEEEE
T ss_pred CCCCcHHHHHHHHHHHHHhCCC--EEEECCCCCCHHHHHHHHH----HCCCCEEEeCCC-CHHHHHHHHHcCCccEEEE
Confidence 3367899999999999974 8886543211122344543 568899888777 9999999999998998765
|
| >2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.004 Score=62.53 Aligned_cols=122 Identities=10% Similarity=0.154 Sum_probs=83.6
Q ss_pred HHHHHHHHHHhhcCCcEEEEeccC---------------------Cchh----hHHHHHHHHH-hCCC-cEEEEeCC---
Q 014285 206 AEASELASKYCKLGFSTLKLNVGR---------------------NITA----DFDVLQAIHA-VHPH-CSFILDAN--- 255 (427)
Q Consensus 206 ~~~~~~~~~~~~~Gf~~iKlKiG~---------------------~~~~----d~~~l~~ir~-~~~~-~~L~vDAN--- 255 (427)
+++.+.|+..+++||..|.|..+. +++. -++.+++||+ ++++ +.+++-++
T Consensus 171 ~~f~~AA~~a~~AGfDgVEIh~ahGYLl~QFLsp~~N~RtD~yGGslenR~rf~~Eiv~aVr~avg~~~V~vRls~~~~~ 250 (402)
T 2hsa_B 171 EDYRRSALNAIEAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVSPAIDH 250 (402)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECSSCCS
T ss_pred HHHHHHHHHHHHcCCCEEEECCccchHHHhccCCccCccCCccCcChhhhhHHHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 344556777788999999999862 1222 3567889998 4643 44444332
Q ss_pred ----CCCCHHHHHHHHHHhhhCC------CCCceEeC--------CCCC--------CChhhHHHHHHhhccccCCeEEe
Q 014285 256 ----EGYTSEEAVEVLGKLNDMG------VIPVLFEQ--------PVHR--------DDWSGLHDVSNFARDTYGISVVA 309 (427)
Q Consensus 256 ----~~~s~~~A~~~l~~L~~~~------l~~~~iEq--------P~~~--------~d~~~~~~L~~~~r~~~~iPIa~ 309 (427)
++++.+++.++++.|++.+ +. ||+- +..+ .+++..++++ +..++||..
T Consensus 251 ~g~~~~~~~~~~~~la~~le~~G~~gg~~vd--~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk----~~~~iPvi~ 324 (402)
T 2hsa_B 251 LDAMDSNPLSLGLAVVERLNKIQLHSGSKLA--YLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTLR----NAYQGTFIC 324 (402)
T ss_dssp TTCCCSCHHHHHHHHHHHHHHHHHHHTSCCS--EEEEECCCCCTTTTSSSTTTTHHHHHHHHHHHHH----HHCSSCEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCccCCceE--EEEEecCccccccCCccccccCCcchHHHHHHHH----HHCCCCEEE
Confidence 4567889999999999888 64 5553 1111 1122233343 468899999
Q ss_pred cCCCCCHHHHHHHHHcCCCcEEEeC
Q 014285 310 DESCRSLNDVQKVMQENLASVVNIK 334 (427)
Q Consensus 310 dE~~~~~~~~~~ll~~~a~~~i~lk 334 (427)
...+ +.++.+++++.+.+|.|.+=
T Consensus 325 ~G~i-~~~~a~~~l~~g~aD~V~ig 348 (402)
T 2hsa_B 325 SGGY-TRELGIEAVAQGDADLVSYG 348 (402)
T ss_dssp ESSC-CHHHHHHHHHTTSCSEEEES
T ss_pred eCCC-CHHHHHHHHHCCCCceeeec
Confidence 8888 99999999999999998763
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.038 Score=53.50 Aligned_cols=134 Identities=18% Similarity=0.237 Sum_probs=95.3
Q ss_pred ceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCC----------------chhhHHHHHHHHHhCCCcEEEEeCCC
Q 014285 193 SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRN----------------ITADFDVLQAIHAVHPHCSFILDANE 256 (427)
Q Consensus 193 ~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~----------------~~~d~~~l~~ir~~~~~~~L~vDAN~ 256 (427)
..|+...+...+++++.+.++...+. |..|-+..|.+ ++.-.+.++++|+..+ +.+.|..+.
T Consensus 58 ~~~~~~QL~g~~~~~~~~aa~~a~~~-~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~ 135 (318)
T 1vhn_A 58 ERNVAVQIFGSEPNELSEAARILSEK-YKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVS-GKFSVKTRL 135 (318)
T ss_dssp CTTEEEEEECSCHHHHHHHHHHHTTT-CSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCS-SEEEEEEES
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHHHh-CCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhhC-CCEEEEecC
Confidence 34555566666789998888888888 99999998731 2334566788888533 566666666
Q ss_pred CCCHHHHHHHHHHhhhCCCCCceE-------eCCC-CCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCC
Q 014285 257 GYTSEEAVEVLGKLNDMGVIPVLF-------EQPV-HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLA 328 (427)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~~~i-------EqP~-~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~ 328 (427)
+|+.++..++++.+++.++. +| ++-. .+.+|+..++++ + ++||.++-.+.+..++.++++...+
T Consensus 136 G~~~~~~~~~a~~l~~~G~d--~i~v~g~~~~~~~~~~~~~~~i~~i~-----~-~ipVi~~GgI~s~~da~~~l~~~ga 207 (318)
T 1vhn_A 136 GWEKNEVEEIYRILVEEGVD--EVFIHTRTVVQSFTGRAEWKALSVLE-----K-RIPTFVSGDIFTPEDAKRALEESGC 207 (318)
T ss_dssp CSSSCCHHHHHHHHHHTTCC--EEEEESSCTTTTTSSCCCGGGGGGSC-----C-SSCEEEESSCCSHHHHHHHHHHHCC
T ss_pred CCChHHHHHHHHHHHHhCCC--EEEEcCCCccccCCCCcCHHHHHHHH-----c-CCeEEEECCcCCHHHHHHHHHcCCC
Confidence 88776666889999998875 44 2321 223565455443 3 8999999999999999999986568
Q ss_pred cEEEeCCC
Q 014285 329 SVVNIKLA 336 (427)
Q Consensus 329 ~~i~lk~~ 336 (427)
|.|++=-.
T Consensus 208 d~V~iGR~ 215 (318)
T 1vhn_A 208 DGLLVARG 215 (318)
T ss_dssp SEEEESGG
T ss_pred CEEEECHH
Confidence 88887443
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.14 Score=54.77 Aligned_cols=122 Identities=10% Similarity=0.099 Sum_probs=83.7
Q ss_pred HHHHHHHHHhhcCCcEEEEeccC----------------------Cch----hhHHHHHHHHH-hCCC--cEEEEeCC--
Q 014285 207 EASELASKYCKLGFSTLKLNVGR----------------------NIT----ADFDVLQAIHA-VHPH--CSFILDAN-- 255 (427)
Q Consensus 207 ~~~~~~~~~~~~Gf~~iKlKiG~----------------------~~~----~d~~~l~~ir~-~~~~--~~L~vDAN-- 255 (427)
++.+.|+..++.||..|-+..+. +++ --++.+++||+ ++++ +.+|+-++
T Consensus 157 ~f~~aA~~a~~aGfDgVeih~a~gy~L~~qFlsp~~N~R~D~yGGs~enR~r~~~ei~~avr~~~g~~~~v~~r~s~~~~ 236 (690)
T 3k30_A 157 WHRNAVRRSIEAGYDIVYVYGAHGYSGVHHFLSKRYNQRTDEYGGSLENRMRLLRELLEDTLDECAGRAAVACRITVEEE 236 (690)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTTCSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTSSEEEEEEECCCC
T ss_pred HHHHHHHHHHHcCCCEEEEcccccchHHHHhCCCccCCCccccCCCHHHHHHHHHHHHHHHHHHhCCCceEEEEECcccc
Confidence 34455666778999999997642 222 23567899998 5766 56677554
Q ss_pred --CCCCHHHHHHHHHHhhhCCCCCceEe-------C----CC-CCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHH
Q 014285 256 --EGYTSEEAVEVLGKLNDMGVIPVLFE-------Q----PV-HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQK 321 (427)
Q Consensus 256 --~~~s~~~A~~~l~~L~~~~l~~~~iE-------q----P~-~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ 321 (427)
++|+.+++.++++.|++ ++. +++ + |. .+..+ ...+.+.+++..++||..--.+.+.++..+
T Consensus 237 ~~~g~~~~~~~~~~~~l~~-~~d--~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~pvi~~G~i~~~~~a~~ 311 (690)
T 3k30_A 237 IDGGITREDIEGVLRELGE-LPD--LWDFAMGSWEGDSVTSRFAPEGR--QEEFVAGLKKLTTKPVVGVGRFTSPDAMVR 311 (690)
T ss_dssp STTSCCHHHHHHHHHHHTT-SSS--EEEEECSCHHHHTCCTTTCCTTT--THHHHTTSGGGCSSCEEECSCCCCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHh-hcC--EEEEecccccccCCCCccCCccc--cHHHHHHHHHHcCCeEEEeCCCCCHHHHHH
Confidence 67899999999999998 332 332 1 11 11111 122333344578999998888899999999
Q ss_pred HHHcCCCcEEEe
Q 014285 322 VMQENLASVVNI 333 (427)
Q Consensus 322 ll~~~a~~~i~l 333 (427)
+++.+.+|.|.+
T Consensus 312 ~l~~g~~d~v~~ 323 (690)
T 3k30_A 312 QIKAGILDLIGA 323 (690)
T ss_dssp HHHTTSCSEEEE
T ss_pred HHHCCCcceEEE
Confidence 999999999875
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.067 Score=51.40 Aligned_cols=133 Identities=14% Similarity=0.144 Sum_probs=89.9
Q ss_pred eeeeeecCCCHHHHHHHHHHHhhcCCc-EEEEeccC-----------CchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHH
Q 014285 195 STAITIPAVSPAEASELASKYCKLGFS-TLKLNVGR-----------NITADFDVLQAIHAVHPHCSFILDANEGYTSEE 262 (427)
Q Consensus 195 p~~~~i~~~~~~~~~~~~~~~~~~Gf~-~iKlKiG~-----------~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~ 262 (427)
|+..++...+++++.+.++.+.+.||. .+-+.++. +++.-.+.+++||+.. ++.+.|=-+..|+.++
T Consensus 95 p~~~~i~g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~-~~Pv~vKi~~~~~~~~ 173 (311)
T 1jub_A 95 PIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFF-TKPLGVKLPPYFDLVH 173 (311)
T ss_dssp CCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTC-CSCEEEEECCCCSHHH
T ss_pred CEEEEcCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhc-CCCEEEEECCCCCHHH
Confidence 444555556788888889888899999 99998751 3333356677777743 3334443344478888
Q ss_pred HHHHHHHhhhCCCCCceE------------e----CCCCC---------C------ChhhHHHHHHhhcccc--CCeEEe
Q 014285 263 AVEVLGKLNDMGVIPVLF------------E----QPVHR---------D------DWSGLHDVSNFARDTY--GISVVA 309 (427)
Q Consensus 263 A~~~l~~L~~~~l~~~~i------------E----qP~~~---------~------d~~~~~~L~~~~r~~~--~iPIa~ 309 (427)
..++++.+++.++. +| + .|... + .++..++++ +.+ .+||..
T Consensus 174 ~~~~a~~~~~~G~d--~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~----~~~~~~ipvi~ 247 (311)
T 1jub_A 174 FDIMAEILNQFPLT--YVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFY----TRLKPEIQIIG 247 (311)
T ss_dssp HHHHHHHHTTSCCC--EEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHH----TTSCTTSEEEE
T ss_pred HHHHHHHHHHcCCc--EEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHH----HhcCCCCCEEE
Confidence 88999999988864 43 2 11110 1 133344444 356 799999
Q ss_pred cCCCCCHHHHHHHHHcCCCcEEEeCC
Q 014285 310 DESCRSLNDVQKVMQENLASVVNIKL 335 (427)
Q Consensus 310 dE~~~~~~~~~~ll~~~a~~~i~lk~ 335 (427)
.=-+.+..++.+++..+ +|.+++=-
T Consensus 248 ~GGI~~~~da~~~l~~G-Ad~V~vg~ 272 (311)
T 1jub_A 248 TGGIETGQDAFEHLLCG-ATMLQIGT 272 (311)
T ss_dssp ESSCCSHHHHHHHHHHT-CSEEEECH
T ss_pred ECCCCCHHHHHHHHHcC-CCEEEEch
Confidence 99999999999999876 78888743
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.29 Score=47.97 Aligned_cols=135 Identities=16% Similarity=0.246 Sum_probs=93.5
Q ss_pred ceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCC----------------chhhHHHHHHHHHh-C-C-CcEEEEe
Q 014285 193 SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRN----------------ITADFDVLQAIHAV-H-P-HCSFILD 253 (427)
Q Consensus 193 ~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~----------------~~~d~~~l~~ir~~-~-~-~~~L~vD 253 (427)
..|+...+...+++.+.+.++...+.||..|-+..|.. ++.-.+.++++++. . | .+++|+.
T Consensus 57 ~~p~~vQL~g~~p~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~g 136 (350)
T 3b0p_A 57 EHPIALQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLG 136 (350)
T ss_dssp GCSEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEESC
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEecC
Confidence 34555666666888888888888889999999998731 12234566788874 2 3 2344544
Q ss_pred CCCCCCHHHHHHHHHHhhhCCCCCceEeCC-------------CCCCChhhHHHHHHhhcccc-CCeEEecCCCCCHHHH
Q 014285 254 ANEGYTSEEAVEVLGKLNDMGVIPVLFEQP-------------VHRDDWSGLHDVSNFARDTY-GISVVADESCRSLNDV 319 (427)
Q Consensus 254 AN~~~s~~~A~~~l~~L~~~~l~~~~iEqP-------------~~~~d~~~~~~L~~~~r~~~-~iPIa~dE~~~~~~~~ 319 (427)
.....+.+++.++++.+++.++...-+..- .++.+|+..+++++ .. ++||...=.+.+..++
T Consensus 137 ~~~~~~~~~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~----~~~~iPVianGgI~s~eda 212 (350)
T 3b0p_A 137 LEGKETYRGLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKG----DFPQLTFVTNGGIRSLEEA 212 (350)
T ss_dssp BTTCCCHHHHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHH----HCTTSEEEEESSCCSHHHH
T ss_pred cCccccHHHHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHH----hCCCCeEEEECCcCCHHHH
Confidence 444456778899999999887652222211 12336777777765 45 8999998899999999
Q ss_pred HHHHHcCCCcEEEe
Q 014285 320 QKVMQENLASVVNI 333 (427)
Q Consensus 320 ~~ll~~~a~~~i~l 333 (427)
.++++ + +|.|++
T Consensus 213 ~~~l~-G-aD~V~i 224 (350)
T 3b0p_A 213 LFHLK-R-VDGVML 224 (350)
T ss_dssp HHHHT-T-SSEEEE
T ss_pred HHHHh-C-CCEEEE
Confidence 99997 4 888876
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.15 Score=54.89 Aligned_cols=123 Identities=9% Similarity=0.089 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhhcCCcEEEEeccC---------------------Cchh----hHHHHHHHHH-hCCCc--EEEEeC---
Q 014285 206 AEASELASKYCKLGFSTLKLNVGR---------------------NITA----DFDVLQAIHA-VHPHC--SFILDA--- 254 (427)
Q Consensus 206 ~~~~~~~~~~~~~Gf~~iKlKiG~---------------------~~~~----d~~~l~~ir~-~~~~~--~L~vDA--- 254 (427)
+++.+.|+..+++||..|.+..+. +++. -++.+++||+ ++++. .+++-+
T Consensus 149 ~~f~~aA~~a~~aGfDgVEih~a~gyLl~qFlsp~~N~R~D~yGGs~enR~r~~~eiv~avr~~vg~~~pv~vrls~~~~ 228 (729)
T 1o94_A 149 QFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTV 228 (729)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTTSEEEEEEEEECS
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCcCcCCCCHHHHhHHHHHHHHHHHHHhCCCceEEEEEccccC
Confidence 344455667778999999998753 1121 3567899998 57663 344433
Q ss_pred --CCCCC-HHHHHHHHHHhhhCCCC---Cc------eEeCCCCC-----C-ChhhHHHHHHhhccccCCeEEecCCCCCH
Q 014285 255 --NEGYT-SEEAVEVLGKLNDMGVI---PV------LFEQPVHR-----D-DWSGLHDVSNFARDTYGISVVADESCRSL 316 (427)
Q Consensus 255 --N~~~s-~~~A~~~l~~L~~~~l~---~~------~iEqP~~~-----~-d~~~~~~L~~~~r~~~~iPIa~dE~~~~~ 316 (427)
.++|+ .+++.++++.|++. +. +. |-+...++ . +++..++++ +..++||..--.+.+.
T Consensus 229 ~~~~G~~~~~~~~~~~~~l~~~-~d~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~pvi~~G~i~~~ 303 (729)
T 1o94_A 229 YGPGQIEAEVDGQKFVEMADSL-VDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVK----QVSKKPVLGVGRYTDP 303 (729)
T ss_dssp SCTTSCCTTTHHHHHHHHHGGG-CSEEEEEECCSTTGGGTSCCTTTCCTTTTHHHHHHHH----TTCSSCEECCSCCCCH
T ss_pred cCCCCCCchHHHHHHHHHHHhh-cCEEEEeeecccccccccCCccccCccccHHHHHHHH----HHCCCEEEEeCCCCCH
Confidence 25788 68899999999873 21 00 11222221 1 233334444 4789999999999999
Q ss_pred HHHHHHHHcCCCcEEEe
Q 014285 317 NDVQKVMQENLASVVNI 333 (427)
Q Consensus 317 ~~~~~ll~~~a~~~i~l 333 (427)
++..++++.+.+|.|.+
T Consensus 304 ~~a~~~l~~g~aD~V~~ 320 (729)
T 1o94_A 304 EKMIEIVTKGYADIIGC 320 (729)
T ss_dssp HHHHHHHHTTSCSBEEE
T ss_pred HHHHHHHHCCCCCEEEe
Confidence 99999999998998874
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.076 Score=51.07 Aligned_cols=133 Identities=15% Similarity=0.103 Sum_probs=90.9
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcCCc---EEEEeccC-----------CchhhHHHHHHHHHhCCCcEEEEeCCCCCC
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLGFS---TLKLNVGR-----------NITADFDVLQAIHAVHPHCSFILDANEGYT 259 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~---~iKlKiG~-----------~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s 259 (427)
.|+..++...+++++.+.++.+.+.||. .+-+.++. +++.-.+.+++||+.. ++.+.|-....|+
T Consensus 94 ~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~~g~~~~g~~~~~~~~ii~~vr~~~-~~Pv~vK~~~~~~ 172 (314)
T 2e6f_A 94 KPLFLSISGLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLAY-GLPFGVKMPPYFD 172 (314)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCSTTCCCGGGSHHHHHHHHHHHHHHH-CSCEEEEECCCCC
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCCCCchhhcCCHHHHHHHHHHHHHhc-CCCEEEEECCCCC
Confidence 4555566667888888888888888999 89998761 3333456788888743 3344444455578
Q ss_pred HHHHHHHHHHhhhCC-CCCceEe----------------CCCC---------------CCChhhHHHHHHhhcccc-CCe
Q 014285 260 SEEAVEVLGKLNDMG-VIPVLFE----------------QPVH---------------RDDWSGLHDVSNFARDTY-GIS 306 (427)
Q Consensus 260 ~~~A~~~l~~L~~~~-l~~~~iE----------------qP~~---------------~~d~~~~~~L~~~~r~~~-~iP 306 (427)
.++..++++.+.+.+ +. +|- .|.. +..++..+++++ .. .+|
T Consensus 173 ~~~~~~~a~~~~~aG~~d--~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~~----~~~~ip 246 (314)
T 2e6f_A 173 IAHFDTAAAVLNEFPLVK--FVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYR----RCPDKL 246 (314)
T ss_dssp HHHHHHHHHHHHTCTTEE--EEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHHH----HCTTSE
T ss_pred HHHHHHHHHHHHhcCCce--EEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHHH----hcCCCC
Confidence 889888899998888 53 432 1111 001334444443 56 899
Q ss_pred EEecCCCCCHHHHHHHHHcCCCcEEEeC
Q 014285 307 VVADESCRSLNDVQKVMQENLASVVNIK 334 (427)
Q Consensus 307 Ia~dE~~~~~~~~~~ll~~~a~~~i~lk 334 (427)
|...=-+.+..++.+++..+ +|.+++=
T Consensus 247 vi~~GGI~~~~da~~~l~~G-Ad~V~ig 273 (314)
T 2e6f_A 247 VFGCGGVYSGEDAFLHILAG-ASMVQVG 273 (314)
T ss_dssp EEEESSCCSHHHHHHHHHHT-CSSEEEC
T ss_pred EEEECCCCCHHHHHHHHHcC-CCEEEEc
Confidence 99998999999999999887 7777763
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=95.02 E-value=0.69 Score=44.18 Aligned_cols=105 Identities=17% Similarity=0.094 Sum_probs=76.7
Q ss_pred CCCHHHHHHHHHHHhhcCCcEEEEeccC----------------CchhhHHHHHHHHHh--CCCcEE--EEeCC-CCCCH
Q 014285 202 AVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAV--HPHCSF--ILDAN-EGYTS 260 (427)
Q Consensus 202 ~~~~~~~~~~~~~~~~~Gf~~iKlKiG~----------------~~~~d~~~l~~ir~~--~~~~~L--~vDAN-~~~s~ 260 (427)
..++.+..+.++++.+.|-..+||--+. +.++-+++|+++++. .++..+ |-|+. .....
T Consensus 90 yg~~~~v~~~v~~l~~aGaagv~iED~~~~k~cgH~gg~~k~l~p~~e~~~rI~Aa~~a~~~~~~~i~aRtda~~a~~g~ 169 (295)
T 1s2w_A 90 YGNFNNARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAGWGL 169 (295)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTTCCH
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEECCCCCCccccccCCCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHHhccccH
Confidence 4577777888889989999999997552 122447889999885 455444 77887 66779
Q ss_pred HHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEec
Q 014285 261 EEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVAD 310 (427)
Q Consensus 261 ~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~d 310 (427)
++|++.++++.+.|-...|+|-+++ +.+..+++++.+ ..++|+...
T Consensus 170 ~~ai~Ra~ay~eAGAd~i~~e~~~~--~~~~~~~i~~~~--~~~~P~i~~ 215 (295)
T 1s2w_A 170 DEALKRAEAYRNAGADAILMHSKKA--DPSDIEAFMKAW--NNQGPVVIV 215 (295)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCCSS--SSHHHHHHHHHH--TTCSCEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCC--CHHHHHHHHHHc--CCCCCEEEe
Confidence 9999999999999866679997565 346778888632 123787643
|
| >3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=94.52 E-value=0.57 Score=47.01 Aligned_cols=117 Identities=15% Similarity=0.252 Sum_probs=78.9
Q ss_pred HHHHHHHhhcCCcEEEEeccC---------------------Cc-hh----hHHHHHHHHH-h----CCCc--EEEEeCC
Q 014285 209 SELASKYCKLGFSTLKLNVGR---------------------NI-TA----DFDVLQAIHA-V----HPHC--SFILDAN 255 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG~---------------------~~-~~----d~~~l~~ir~-~----~~~~--~L~vDAN 255 (427)
.+.++..+++||..|-|..+. ++ +. -++.+++||+ + ++++ .+|+-+.
T Consensus 173 ~~AA~rA~~AGfDgVEIH~ahGYLl~QFlSp~~N~RtD~yGGs~lenR~Rf~~evv~aVr~~v~~~~~~~f~v~vRis~~ 252 (419)
T 3l5a_A 173 RDATLRAIKAGFDGVEISIAQRLLIQTFFSTFSNRRTDHYGADSLKNRARLCLEVMRAVQEVIDKEAPDNFILGFRATPE 252 (419)
T ss_dssp HHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSTTCHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECSC
T ss_pred HHHHHHHHHcCCCEEEECCccchHHHHccCCcccccccCCCCchhhhhhHHHHHHHHHHHHHHhhhcCCCeeEEEecccc
Confidence 344666778999999999862 12 22 2456788888 4 4554 4454442
Q ss_pred ----C--CCCHHHHHHHHHHhhh-CCCCCceEe------------CCCC-C-CChhhHHHHHHhhcccc--CCeEEecCC
Q 014285 256 ----E--GYTSEEAVEVLGKLND-MGVIPVLFE------------QPVH-R-DDWSGLHDVSNFARDTY--GISVVADES 312 (427)
Q Consensus 256 ----~--~~s~~~A~~~l~~L~~-~~l~~~~iE------------qP~~-~-~d~~~~~~L~~~~r~~~--~iPIa~dE~ 312 (427)
+ +|+.+++.++++.|++ .++. ||+ +|.. + .+++..+.+++ .. .+||.+.=.
T Consensus 253 ~~~~~~~G~~~ed~~~la~~L~~~~Gvd--~I~vs~g~~~~~~~~~~~~g~~~~~~~a~~Ik~----~v~~~iPVI~~Gg 326 (419)
T 3l5a_A 253 ETRGSDLGYTIDEFNQLIDWVMDVSNIQ--YLAIASWGRHIYQNTSRTPGDHFGRPVNQIVYE----HLAGRIPLIASGG 326 (419)
T ss_dssp EEETTEEEECHHHHHHHHHHHHHHSCCC--CEEECCTTCCGGGCBCCCSSTTTTSBHHHHHHH----HHTTSSCEEECSS
T ss_pred cccCCCCCCCHHHHHHHHHHHHhhcCCc--EEEEeeCCccccccccCCCCccccHHHHHHHHH----HcCCCCeEEEECC
Confidence 3 8999999999999999 7764 443 1211 1 13344455543 34 589988888
Q ss_pred CCCHHHHHHHHHcCCCcEEEe
Q 014285 313 CRSLNDVQKVMQENLASVVNI 333 (427)
Q Consensus 313 ~~~~~~~~~ll~~~a~~~i~l 333 (427)
+.+.++.+++++. +|.|.+
T Consensus 327 I~t~e~Ae~~L~~--aDlVai 345 (419)
T 3l5a_A 327 INSPESALDALQH--ADMVGM 345 (419)
T ss_dssp CCSHHHHHHHGGG--CSEEEE
T ss_pred CCCHHHHHHHHHh--CCcHHH
Confidence 8999999999987 787765
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=94.47 E-value=0.48 Score=45.85 Aligned_cols=122 Identities=15% Similarity=0.081 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeccCC----------chhhHHHHHHHHHh--------CCCcEEEEeCCCCCCHHHHHHH
Q 014285 205 PAEASELASKYCKLGFSTLKLNVGRN----------ITADFDVLQAIHAV--------HPHCSFILDANEGYTSEEAVEV 266 (427)
Q Consensus 205 ~~~~~~~~~~~~~~Gf~~iKlKiG~~----------~~~d~~~l~~ir~~--------~~~~~L~vDAN~~~s~~~A~~~ 266 (427)
.+++.+.++... .||..+-+.++.. .+.-.+.+++||+. ++++.+.|--+..|+.++..++
T Consensus 152 ~~~~~~aa~~~~-~g~d~iein~~sP~~~g~~~~~~~~~~~~il~~vr~~~~~~~~~~g~~~Pv~vKi~~~~~~~~~~~~ 230 (336)
T 1f76_A 152 KDDYLICMEKIY-AYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQV 230 (336)
T ss_dssp HHHHHHHHHHHG-GGCSEEEEECCCSSSTTGGGGGSHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCSCCCHHHHHHH
T ss_pred HHHHHHHHHHHh-ccCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhcccccCceEEEecCCCCHHHHHHH
Confidence 667776666664 4999999988631 12224667888873 4577788877888999999999
Q ss_pred HHHhhhCCCCCceEeC-------------CCCCC------------ChhhHHHHHHhhcccc--CCeEEecCCCCCHHHH
Q 014285 267 LGKLNDMGVIPVLFEQ-------------PVHRD------------DWSGLHDVSNFARDTY--GISVVADESCRSLNDV 319 (427)
Q Consensus 267 l~~L~~~~l~~~~iEq-------------P~~~~------------d~~~~~~L~~~~r~~~--~iPIa~dE~~~~~~~~ 319 (427)
++.+++.++. +|.= |.... .++..+++++ .. ++||...=-+.+..++
T Consensus 231 a~~l~~~Gvd--~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~----~~~~~ipVi~~GGI~~~~da 304 (336)
T 1f76_A 231 ADSLVRHNID--GVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSL----ELNGRLPIIGVGGIDSVIAA 304 (336)
T ss_dssp HHHHHHTTCS--EEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHH----HHTTSSCEEEESSCCSHHHH
T ss_pred HHHHHHcCCc--EEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHH----HhCCCCCEEEECCCCCHHHH
Confidence 9999988864 4430 11000 0122333433 45 7999998899999999
Q ss_pred HHHHHcCCCcEEEeC
Q 014285 320 QKVMQENLASVVNIK 334 (427)
Q Consensus 320 ~~ll~~~a~~~i~lk 334 (427)
.++++.+ +|.|++=
T Consensus 305 ~~~l~~G-Ad~V~ig 318 (336)
T 1f76_A 305 REKIAAG-ASLVQIY 318 (336)
T ss_dssp HHHHHHT-CSEEEES
T ss_pred HHHHHCC-CCEEEee
Confidence 9999987 8988874
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=94.13 E-value=2.1 Score=39.36 Aligned_cols=141 Identities=13% Similarity=0.153 Sum_probs=97.9
Q ss_pred ecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCce
Q 014285 200 IPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVL 279 (427)
Q Consensus 200 i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~ 279 (427)
+...+++++.+.++.+++.|++.+.+..-. ....+.++++++.+|++.+... .-.+.+++...++.=.+ |
T Consensus 40 ir~~~~~~a~~~a~al~~gGi~~iEvt~~t--~~a~e~I~~l~~~~~~~~iGaG--TVlt~~~a~~Ai~AGA~------f 109 (232)
T 4e38_A 40 IAIDNAEDIIPLGKVLAENGLPAAEITFRS--DAAVEAIRLLRQAQPEMLIGAG--TILNGEQALAAKEAGAT------F 109 (232)
T ss_dssp ECCSSGGGHHHHHHHHHHTTCCEEEEETTS--TTHHHHHHHHHHHCTTCEEEEE--CCCSHHHHHHHHHHTCS------E
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEeCCC--CCHHHHHHHHHHhCCCCEEeEC--CcCCHHHHHHHHHcCCC------E
Confidence 445688899999999999999999997643 2456788889988887665544 46788877666554333 5
Q ss_pred EeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCC-cc-HHHHHHHHHHHHHc-CCc
Q 014285 280 FEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK-FG-VLGTLQIIKATRKS-GLH 356 (427)
Q Consensus 280 iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~-~G-i~~~~~~~~~A~~~-gi~ 356 (427)
|=-|- .+ .+..+.|+ +.++|+..| +.|+.++.++++.+ +|++-+=|.- .| +.-... +.... +++
T Consensus 110 IvsP~--~~-~~vi~~~~----~~gi~~ipG--v~TptEi~~A~~~G-ad~vK~FPa~~~gG~~~lka---l~~p~p~ip 176 (232)
T 4e38_A 110 VVSPG--FN-PNTVRACQ----EIGIDIVPG--VNNPSTVEAALEMG-LTTLKFFPAEASGGISMVKS---LVGPYGDIR 176 (232)
T ss_dssp EECSS--CC-HHHHHHHH----HHTCEEECE--ECSHHHHHHHHHTT-CCEEEECSTTTTTHHHHHHH---HHTTCTTCE
T ss_pred EEeCC--CC-HHHHHHHH----HcCCCEEcC--CCCHHHHHHHHHcC-CCEEEECcCccccCHHHHHH---HHHHhcCCC
Confidence 54443 23 34455554 468999887 67999999999876 8999887753 34 433322 22333 799
Q ss_pred EEEcccC
Q 014285 357 LMIDGMI 363 (427)
Q Consensus 357 ~~~~s~~ 363 (427)
+++.+-+
T Consensus 177 ~~ptGGI 183 (232)
T 4e38_A 177 LMPTGGI 183 (232)
T ss_dssp EEEBSSC
T ss_pred eeeEcCC
Confidence 9988754
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=93.44 E-value=0.63 Score=44.50 Aligned_cols=101 Identities=12% Similarity=0.064 Sum_probs=77.0
Q ss_pred CCCHHHHHHHHHHHhhcCCcEEEEeccC--------------CchhhHHHHHHHHHh--CCCcEE--EEeCCCCCCHHHH
Q 014285 202 AVSPAEASELASKYCKLGFSTLKLNVGR--------------NITADFDVLQAIHAV--HPHCSF--ILDANEGYTSEEA 263 (427)
Q Consensus 202 ~~~~~~~~~~~~~~~~~Gf~~iKlKiG~--------------~~~~d~~~l~~ir~~--~~~~~L--~vDAN~~~s~~~A 263 (427)
..+++.+.+.++.+.+.|-..+||--+. +.++-+++|++.++. ++++-| |-|+......++|
T Consensus 94 yg~~~~v~~~v~~l~~aGaagv~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTDa~~~~gldea 173 (298)
T 3eoo_A 94 WGGAFNIARTIRSFIKAGVGAVHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMARTDAAAAEGIDAA 173 (298)
T ss_dssp SSSHHHHHHHHHHHHHTTCSEEEEECBCCCCCTTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCeEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEEeehhhhhcCHHHH
Confidence 3478888888888989999999996431 234557889888874 466444 8999866678999
Q ss_pred HHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEe
Q 014285 264 VEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA 309 (427)
Q Consensus 264 ~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~ 309 (427)
++.+++..+.|-...|+|-+- +.+.++++++ ..++|+..
T Consensus 174 i~Ra~ay~~AGAD~if~~~~~---~~ee~~~~~~----~~~~Pl~~ 212 (298)
T 3eoo_A 174 IERAIAYVEAGADMIFPEAMK---TLDDYRRFKE----AVKVPILA 212 (298)
T ss_dssp HHHHHHHHHTTCSEEEECCCC---SHHHHHHHHH----HHCSCBEE
T ss_pred HHHHHhhHhcCCCEEEeCCCC---CHHHHHHHHH----HcCCCeEE
Confidence 999999999876667999873 6788899987 45677744
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.16 E-value=1.9 Score=40.97 Aligned_cols=100 Identities=10% Similarity=0.119 Sum_probs=78.1
Q ss_pred CCCHHHHHHHHHHHhhcCCcEEEEeccC-------------CchhhHHHHHHHHHh--CCCcE--EEEeCCCCCCHHHHH
Q 014285 202 AVSPAEASELASKYCKLGFSTLKLNVGR-------------NITADFDVLQAIHAV--HPHCS--FILDANEGYTSEEAV 264 (427)
Q Consensus 202 ~~~~~~~~~~~~~~~~~Gf~~iKlKiG~-------------~~~~d~~~l~~ir~~--~~~~~--L~vDAN~~~s~~~A~ 264 (427)
..++++..+.++++.+.|-..+||--+. +.++-.++|+++++. .++.. =|-|+ .....++|+
T Consensus 93 yg~~~~~~~~v~~l~~aGa~gv~iED~~~pKrcgh~~gkl~~~~e~~~~I~aa~~a~~~~~~~i~aRtda-a~~gl~~ai 171 (287)
T 3b8i_A 93 YGNALNVMRTVVELERAGIAALTIEDTLLPAQFGRKSTDLICVEEGVGKIRAALEARVDPALTIIARTNA-ELIDVDAVI 171 (287)
T ss_dssp SSSHHHHHHHHHHHHHHTCSEEEEECBCCSCCTTTCTTCBCCHHHHHHHHHHHHHHCCSTTSEEEEEEET-TTSCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCeEEEEcCCCCccccCCCCCCccCHHHHHHHHHHHHHcCCCCCcEEEEechh-hhcCHHHHH
Confidence 3488888888999999999999997653 234567889999885 35544 47899 777899999
Q ss_pred HHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEe
Q 014285 265 EVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA 309 (427)
Q Consensus 265 ~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~ 309 (427)
+.++++.+.|-...|+|-+ + +.+.++++++ ..++|+..
T Consensus 172 ~Ra~ay~eAGAd~i~~e~~-~--~~~~~~~i~~----~~~~P~ii 209 (287)
T 3b8i_A 172 QRTLAYQEAGADGICLVGV-R--DFAHLEAIAE----HLHIPLML 209 (287)
T ss_dssp HHHHHHHHTTCSEEEEECC-C--SHHHHHHHHT----TCCSCEEE
T ss_pred HHHHHHHHcCCCEEEecCC-C--CHHHHHHHHH----hCCCCEEE
Confidence 9999999988666799974 3 4577888886 57788874
|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
Probab=93.10 E-value=2.8 Score=39.98 Aligned_cols=144 Identities=14% Similarity=0.149 Sum_probs=97.3
Q ss_pred CCCHHHHHHHHHHHhhcCCcEEEEeccC--------------CchhhHHHHHHHHHh----CCCcEE--EEeCCCCCCHH
Q 014285 202 AVSPAEASELASKYCKLGFSTLKLNVGR--------------NITADFDVLQAIHAV----HPHCSF--ILDANEGYTSE 261 (427)
Q Consensus 202 ~~~~~~~~~~~~~~~~~Gf~~iKlKiG~--------------~~~~d~~~l~~ir~~----~~~~~L--~vDAN~~~s~~ 261 (427)
..++..+.+.++.+.+.|-..+||-=.. +.++-+++|++.++. ++++-| |.|+......+
T Consensus 91 yg~~~~v~~tv~~l~~aGaagv~iEDq~~~Krcgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~~~gld 170 (302)
T 3fa4_A 91 YGGPIMVARTTEQYSRSGVAAFHIEDQVQTKRCGHLAGKILVDTDTYVTRIRAAVQARQRIGSDIVVIARTDSLQTHGYE 170 (302)
T ss_dssp TSSHHHHHHHHHHHHHTTCCEEEECSBCCC-------CCCBCCHHHHHHHHHHHHHHHHHHTCCCEEEEEECCHHHHCHH
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCEEEEEEecccccCCHH
Confidence 3477777788888889999999985321 345667888888762 577544 89987667899
Q ss_pred HHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEec--CC----CCCHHHHHHHHHcCCCcEEEeCC
Q 014285 262 EAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVAD--ES----CRSLNDVQKVMQENLASVVNIKL 335 (427)
Q Consensus 262 ~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~d--E~----~~~~~~~~~ll~~~a~~~i~lk~ 335 (427)
+|++.+++..+.|-...|+|-+- +.++++++++.+ .++|+... |. ..+..++. +. .+..+..-.
T Consensus 171 eAi~Ra~ay~eAGAD~ifi~g~~---~~~ei~~~~~~~---~~~Pl~~n~~~~g~~p~~~~~eL~---~l-Gv~~v~~~~ 240 (302)
T 3fa4_A 171 ESVARLRAARDAGADVGFLEGIT---SREMARQVIQDL---AGWPLLLNMVEHGATPSISAAEAK---EM-GFRIIIFPF 240 (302)
T ss_dssp HHHHHHHHHHTTTCSEEEETTCC---CHHHHHHHHHHT---TTSCEEEECCTTSSSCCCCHHHHH---HH-TCSEEEETT
T ss_pred HHHHHHHHHHHcCCCEEeecCCC---CHHHHHHHHHHh---cCCceeEEEecCCCCCCCCHHHHH---Hc-CCCEEEEch
Confidence 99999999998776556898763 467888888732 14666442 21 23444443 33 467777766
Q ss_pred CCcc--HHHHHHHHHHHHHcCC
Q 014285 336 AKFG--VLGTLQIIKATRKSGL 355 (427)
Q Consensus 336 ~~~G--i~~~~~~~~~A~~~gi 355 (427)
+... +...++..+.-.+.|.
T Consensus 241 ~~~raa~~A~~~~~~~i~~~g~ 262 (302)
T 3fa4_A 241 AALGPAVAAMREAMEKLKRDGI 262 (302)
T ss_dssp TTHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHcCC
Confidence 6653 4555566555555654
|
| >3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=92.76 E-value=0.33 Score=47.32 Aligned_cols=95 Identities=16% Similarity=0.247 Sum_probs=70.2
Q ss_pred CCHHHHHHHHHHhhhCCCCCceEeCCCCC-CChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCC
Q 014285 258 YTSEEAVEVLGKLNDMGVIPVLFEQPVHR-DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLA 336 (427)
Q Consensus 258 ~s~~~A~~~l~~L~~~~l~~~~iEqP~~~-~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~ 336 (427)
.+.+...+.+++|.+.|-. .+--.++. ++.+.+.++++ ++++|+.+|-++. ..-+...++.+ +|-+.+.|.
T Consensus 43 ~D~~atv~Qi~~l~~aG~d--iVRvavp~~~~a~al~~I~~----~~~vPlvaDiHf~-~~lal~a~e~G-~dklRINPG 114 (366)
T 3noy_A 43 HDVEATLNQIKRLYEAGCE--IVRVAVPHKEDVEALEEIVK----KSPMPVIADIHFA-PSYAFLSMEKG-VHGIRINPG 114 (366)
T ss_dssp TCHHHHHHHHHHHHHTTCC--EEEEECCSHHHHHHHHHHHH----HCSSCEEEECCSC-HHHHHHHHHTT-CSEEEECHH
T ss_pred cCHHHHHHHHHHHHHcCCC--EEEeCCCChHHHHHHHHHHh----cCCCCEEEeCCCC-HHHHHHHHHhC-CCeEEECCc
Confidence 3566667777778777753 67766764 22344555554 6899999997654 44455566653 888999999
Q ss_pred Ccc-HHHHHHHHHHHHHcCCcEEEc
Q 014285 337 KFG-VLGTLQIIKATRKSGLHLMID 360 (427)
Q Consensus 337 ~~G-i~~~~~~~~~A~~~gi~~~~~ 360 (427)
.+| -....++++.|+++|+++-++
T Consensus 115 Nig~~~~~~~vv~~ak~~~~piRIG 139 (366)
T 3noy_A 115 NIGKEEIVREIVEEAKRRGVAVRIG 139 (366)
T ss_dssp HHSCHHHHHHHHHHHHHHTCEEEEE
T ss_pred ccCchhHHHHHHHHHHHcCCCEEEe
Confidence 998 778899999999999999886
|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A | Back alignment and structure |
|---|
Probab=92.71 E-value=2.4 Score=40.57 Aligned_cols=152 Identities=13% Similarity=0.077 Sum_probs=97.7
Q ss_pred eeeeeee--cCCCHHHHHHHHHHHhhcCCcEEEEeccC--------------CchhhHHHHHHHHHh----CCCcEE--E
Q 014285 194 LSTAITI--PAVSPAEASELASKYCKLGFSTLKLNVGR--------------NITADFDVLQAIHAV----HPHCSF--I 251 (427)
Q Consensus 194 ip~~~~i--~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~--------------~~~~d~~~l~~ir~~----~~~~~L--~ 251 (427)
+|+-.-. +..+++.+.+.++.+.+.|-..+||-=+. +.++-+++|++.++. ++++-| |
T Consensus 89 ~PviaD~d~Gyg~~~~v~~~v~~l~~aGaagv~iEDq~~~k~cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~AR 168 (307)
T 3lye_A 89 PPLIADMDTGYGGPIMVARTVEHYIRSGVAGAHLEDQILTKRCGHLSGKKVVSRDEYLVRIRAAVATKRRLRSDFVLIAR 168 (307)
T ss_dssp CCEEEECTTCSSSHHHHHHHHHHHHHTTCCEEEECCBCCCC--------CBCCHHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CcEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEcCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 5544332 23477777788888889999999986431 334556788888762 566544 8
Q ss_pred EeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEe--cCC----CCCHHHHHHHHHc
Q 014285 252 LDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA--DES----CRSLNDVQKVMQE 325 (427)
Q Consensus 252 vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~--dE~----~~~~~~~~~ll~~ 325 (427)
.|+......++|++.+++..+.|-...|+|-+- +.+.++++++.+ .++|+.. =|. ..+..++. +.
T Consensus 169 TDa~~~~gldeAi~Ra~ay~eAGAD~ifi~~~~---~~~~~~~i~~~~---~~~Pv~~n~~~~g~~p~~t~~eL~---~l 239 (307)
T 3lye_A 169 TDALQSLGYEECIERLRAARDEGADVGLLEGFR---SKEQAAAAVAAL---APWPLLLNSVENGHSPLITVEEAK---AM 239 (307)
T ss_dssp ECCHHHHCHHHHHHHHHHHHHTTCSEEEECCCS---CHHHHHHHHHHH---TTSCBEEEEETTSSSCCCCHHHHH---HH
T ss_pred chhhhccCHHHHHHHHHHHHHCCCCEEEecCCC---CHHHHHHHHHHc---cCCceeEEeecCCCCCCCCHHHHH---Hc
Confidence 998766679999999999988876656998652 567888888732 1366643 221 23444443 33
Q ss_pred CCCcEEEeCCCCcc--HHHHHHHHHHHHHcCC
Q 014285 326 NLASVVNIKLAKFG--VLGTLQIIKATRKSGL 355 (427)
Q Consensus 326 ~a~~~i~lk~~~~G--i~~~~~~~~~A~~~gi 355 (427)
+ +..+..-.+... ....++..+.-.+.|-
T Consensus 240 G-v~~v~~~~~~~raa~~a~~~~~~~l~~~g~ 270 (307)
T 3lye_A 240 G-FRIMIFSFATLAPAYAAIRETLVRLRDHGV 270 (307)
T ss_dssp T-CSEEEEETTTHHHHHHHHHHHHHHHHHHSC
T ss_pred C-CeEEEEChHHHHHHHHHHHHHHHHHHHhCC
Confidence 3 677765555443 4445555555555554
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=92.35 E-value=4.8 Score=35.48 Aligned_cols=145 Identities=11% Similarity=0.107 Sum_probs=92.2
Q ss_pred eeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhC-CCcEEEEeCCCCCCHHHHHHHHHHhhhCC
Q 014285 196 TAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH-PHCSFILDANEGYTSEEAVEVLGKLNDMG 274 (427)
Q Consensus 196 ~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~-~~~~L~vDAN~~~s~~~A~~~l~~L~~~~ 274 (427)
+-..+...+++++.+.++.+.+.|+..+.+-.+.. .-.+.++.+|+.. ++..+.++. ..+++++.+..+ .+
T Consensus 12 ~i~~~~~~~~~~~~~~~~~~~~~G~~~iev~~~~~--~~~~~i~~ir~~~~~~~~ig~~~--v~~~~~~~~a~~----~G 83 (205)
T 1wa3_A 12 IVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVP--DADTVIKELSFLKEKGAIIGAGT--VTSVEQCRKAVE----SG 83 (205)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTST--THHHHHHHTHHHHHTTCEEEEES--CCSHHHHHHHHH----HT
T ss_pred EEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCh--hHHHHHHHHHHHCCCCcEEEecc--cCCHHHHHHHHH----cC
Confidence 33445556888888889999899999998876642 2244588888864 467777653 457887655544 34
Q ss_pred CCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCc-cHHHHHHHHHHHHHc
Q 014285 275 VIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKS 353 (427)
Q Consensus 275 l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~-Gi~~~~~~~~~A~~~ 353 (427)
.. ++=-|... ..+.+.++ +.++|+.. .+.+..+..++++.+ +|++.+.+... |+.. +.++.+..
T Consensus 84 ad--~iv~~~~~---~~~~~~~~----~~g~~vi~--g~~t~~e~~~a~~~G-ad~vk~~~~~~~g~~~---~~~l~~~~ 148 (205)
T 1wa3_A 84 AE--FIVSPHLD---EEISQFCK----EKGVFYMP--GVMTPTELVKAMKLG-HTILKLFPGEVVGPQF---VKAMKGPF 148 (205)
T ss_dssp CS--EEECSSCC---HHHHHHHH----HHTCEEEC--EECSHHHHHHHHHTT-CCEEEETTHHHHHHHH---HHHHHTTC
T ss_pred CC--EEEcCCCC---HHHHHHHH----HcCCcEEC--CcCCHHHHHHHHHcC-CCEEEEcCccccCHHH---HHHHHHhC
Confidence 32 56233322 34445554 57899987 356788888888765 88887776322 2322 23333445
Q ss_pred -CCcEEEcccC
Q 014285 354 -GLHLMIDGMI 363 (427)
Q Consensus 354 -gi~~~~~s~~ 363 (427)
+++++..+-+
T Consensus 149 ~~~pvia~GGI 159 (205)
T 1wa3_A 149 PNVKFVPTGGV 159 (205)
T ss_dssp TTCEEEEBSSC
T ss_pred CCCcEEEcCCC
Confidence 7888877644
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=92.32 E-value=5.9 Score=36.01 Aligned_cols=143 Identities=12% Similarity=0.110 Sum_probs=92.9
Q ss_pred eecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCc
Q 014285 199 TIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPV 278 (427)
Q Consensus 199 ~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~ 278 (427)
-+...++++..+.++++.+.|.+.+.+..-. ....+.++.+++.+|++.+..+. -.+.+++...++.=.++ +|
T Consensus 31 V~r~~~~~~~~~~~~al~~gGv~~iel~~k~--~~~~~~i~~l~~~~~~~~igagt--vl~~d~~~~A~~aGAd~-v~-- 103 (225)
T 1mxs_A 31 VITIAREEDILPLADALAAGGIRTLEVTLRS--QHGLKAIQVLREQRPELCVGAGT--VLDRSMFAAVEAAGAQF-VV-- 103 (225)
T ss_dssp EECCSCGGGHHHHHHHHHHTTCCEEEEESSS--THHHHHHHHHHHHCTTSEEEEEC--CCSHHHHHHHHHHTCSS-EE--
T ss_pred EEeCCCHHHHHHHHHHHHHCCCCEEEEecCC--ccHHHHHHHHHHhCcccEEeeCe--EeeHHHHHHHHHCCCCE-EE--
Confidence 3444577888888999999999999998532 34566788888888887776665 56777755554443332 22
Q ss_pred eEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCC-ccHHHHHHHHHHHHHc-CCc
Q 014285 279 LFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK-FGVLGTLQIIKATRKS-GLH 356 (427)
Q Consensus 279 ~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~-~Gi~~~~~~~~~A~~~-gi~ 356 (427)
-| ..| ....+.++ ..++|+..| +.++.++.++++.+ +||+.+=|.. .| +..-+-++.... +++
T Consensus 104 ---~p--~~d-~~v~~~~~----~~g~~~i~G--~~t~~e~~~A~~~G-ad~vk~FPa~~~~--G~~~lk~i~~~~~~ip 168 (225)
T 1mxs_A 104 ---TP--GIT-EDILEAGV----DSEIPLLPG--ISTPSEIMMGYALG-YRRFKLFPAEISG--GVAAIKAFGGPFGDIR 168 (225)
T ss_dssp ---CS--SCC-HHHHHHHH----HCSSCEECE--ECSHHHHHHHHTTT-CCEEEETTHHHHT--HHHHHHHHHTTTTTCE
T ss_pred ---eC--CCC-HHHHHHHH----HhCCCEEEe--eCCHHHHHHHHHCC-CCEEEEccCcccc--CHHHHHHHHhhCCCCe
Confidence 22 333 34555554 577888776 88999998888764 8998885521 21 222223334445 799
Q ss_pred EEEcccC
Q 014285 357 LMIDGMI 363 (427)
Q Consensus 357 ~~~~s~~ 363 (427)
+++.+-+
T Consensus 169 vvaiGGI 175 (225)
T 1mxs_A 169 FCPTGGV 175 (225)
T ss_dssp EEEBSSC
T ss_pred EEEECCC
Confidence 9877644
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=92.15 E-value=6.1 Score=35.86 Aligned_cols=140 Identities=16% Similarity=0.172 Sum_probs=91.8
Q ss_pred cCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceE
Q 014285 201 PAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF 280 (427)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~i 280 (427)
...++++..+.++++.+.|.+.+.+..-. ....+.++.+++.+|++.+..+. -++.+++...++.=.+ ++
T Consensus 24 r~~~~~~~~~~~~al~~gGv~~iel~~k~--~~~~~~i~~l~~~~~~l~vgaGt--vl~~d~~~~A~~aGAd------~v 93 (224)
T 1vhc_A 24 ALDNADDILPLADTLAKNGLSVAEITFRS--EAAADAIRLLRANRPDFLIAAGT--VLTAEQVVLAKSSGAD------FV 93 (224)
T ss_dssp CCSSGGGHHHHHHHHHHTTCCEEEEETTS--TTHHHHHHHHHHHCTTCEEEEES--CCSHHHHHHHHHHTCS------EE
T ss_pred eCCCHHHHHHHHHHHHHcCCCEEEEeccC--chHHHHHHHHHHhCcCcEEeeCc--EeeHHHHHHHHHCCCC------EE
Confidence 34577888888999999999999998632 34567888888888876666664 5677665544443222 44
Q ss_pred eCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCC-cc-HHHHHHHHHHHHHc-CCcE
Q 014285 281 EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK-FG-VLGTLQIIKATRKS-GLHL 357 (427)
Q Consensus 281 EqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~-~G-i~~~~~~~~~A~~~-gi~~ 357 (427)
=-| ..| ....+.++ +.++|+..| +.++.++.++.+.+ +||+-+=|.. .| +....++ .... ++++
T Consensus 94 ~~p--~~d-~~v~~~ar----~~g~~~i~G--v~t~~e~~~A~~~G-ad~vk~Fpa~~~gG~~~lk~l---~~~~~~ipv 160 (224)
T 1vhc_A 94 VTP--GLN-PKIVKLCQ----DLNFPITPG--VNNPMAIEIALEMG-ISAVKFFPAEASGGVKMIKAL---LGPYAQLQI 160 (224)
T ss_dssp ECS--SCC-HHHHHHHH----HTTCCEECE--ECSHHHHHHHHHTT-CCEEEETTTTTTTHHHHHHHH---HTTTTTCEE
T ss_pred EEC--CCC-HHHHHHHH----HhCCCEEec--cCCHHHHHHHHHCC-CCEEEEeeCccccCHHHHHHH---HhhCCCCeE
Confidence 223 333 33344443 477887777 78899998888765 8999887643 33 4333332 3334 7999
Q ss_pred EEcccC
Q 014285 358 MIDGMI 363 (427)
Q Consensus 358 ~~~s~~ 363 (427)
++.+-+
T Consensus 161 vaiGGI 166 (224)
T 1vhc_A 161 MPTGGI 166 (224)
T ss_dssp EEBSSC
T ss_pred EEECCc
Confidence 887644
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=91.61 E-value=4.2 Score=38.24 Aligned_cols=140 Identities=9% Similarity=0.091 Sum_probs=92.4
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccC--------CchhhHHHHHHHHHh----CCCcEE--EEeCCCC---C----CHHH
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGR--------NITADFDVLQAIHAV----HPHCSF--ILDANEG---Y----TSEE 262 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~--------~~~~d~~~l~~ir~~----~~~~~L--~vDAN~~---~----s~~~ 262 (427)
++++..+.++++.+.|-..+|+--+. +.++-.++|+++++. +.++.+ |-|+... . ..++
T Consensus 90 ~~~~~~~~v~~l~~aGaagv~iED~~~~~~k~l~~~~e~~~~I~aa~~a~~~~g~~~~i~aRtda~~~~~g~~~~~~~~~ 169 (275)
T 2ze3_A 90 APEDVRRTVEHFAALGVAGVNLEDATGLTPTELYDLDSQLRRIEAARAAIDASGVPVFLNARTDTFLKGHGATDEERLAE 169 (275)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECBCSSSSSCBCCHHHHHHHHHHHHHHHHHHTSCCEEEEECCTTTTTCSSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcEEEECCCcCCCCCccCCHHHHHHHHHHHHHhHhhcCCCeEEEEechhhhccccccchhhHHH
Confidence 78888888999999999999998653 445667889888875 665444 5677432 1 4789
Q ss_pred HHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEec--CCCCCHHHHHHHHHcCCCcEEEeCCCCcc-
Q 014285 263 AVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVAD--ESCRSLNDVQKVMQENLASVVNIKLAKFG- 339 (427)
Q Consensus 263 A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~d--E~~~~~~~~~~ll~~~a~~~i~lk~~~~G- 339 (427)
|++.++++.+.|-...|+|-+ + +.+.++++++ ..++|+..- ....+. .++-+. .+..+..-++..-
T Consensus 170 ai~Ra~ay~eAGAd~i~~e~~-~--~~~~~~~i~~----~~~~P~n~~~~~~~~~~---~eL~~l-Gv~~v~~~~~~~ra 238 (275)
T 2ze3_A 170 TVRRGQAYADAGADGIFVPLA-L--QSQDIRALAD----ALRVPLNVMAFPGSPVP---RALLDA-GAARVSFGQSLMLA 238 (275)
T ss_dssp HHHHHHHHHHTTCSEEECTTC-C--CHHHHHHHHH----HCSSCEEEECCTTSCCH---HHHHHT-TCSEEECTTHHHHH
T ss_pred HHHHHHHHHHCCCCEEEECCC-C--CHHHHHHHHH----hcCCCEEEecCCCCCCH---HHHHHc-CCcEEEEChHHHHH
Confidence 999999999987665689885 3 4677888887 466777443 333443 444444 4776665544332
Q ss_pred -HHHHHHHHHHHHHcC
Q 014285 340 -VLGTLQIIKATRKSG 354 (427)
Q Consensus 340 -i~~~~~~~~~A~~~g 354 (427)
.....+.++.-.+.|
T Consensus 239 a~~a~~~~~~~i~~~g 254 (275)
T 2ze3_A 239 TLGLVQRMAAELHAAE 254 (275)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhC
Confidence 333444444444444
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=91.60 E-value=2.8 Score=40.30 Aligned_cols=151 Identities=14% Similarity=0.131 Sum_probs=96.6
Q ss_pred ceeeeeeec--CCCHHHHHHHHHHHhhcCCcEEEEeccC--------------CchhhHHHHHHHHHhC--CCcEE--EE
Q 014285 193 SLSTAITIP--AVSPAEASELASKYCKLGFSTLKLNVGR--------------NITADFDVLQAIHAVH--PHCSF--IL 252 (427)
Q Consensus 193 ~ip~~~~i~--~~~~~~~~~~~~~~~~~Gf~~iKlKiG~--------------~~~~d~~~l~~ir~~~--~~~~L--~v 252 (427)
.+|+-.-.+ ..++++..+-++++.+.|-..+||--+. +.++-.++|+++++.. ++..+ |-
T Consensus 101 ~~PviaD~d~Gyg~~~~v~~tv~~l~~aGaagv~iED~~~~k~cgH~~gk~L~p~~e~~~rI~Aa~~A~~~~~~~I~ARt 180 (318)
T 1zlp_A 101 NLCVVVDGDTGGGGPLNVQRFIRELISAGAKGVFLEDQVWPKKCGHMRGKAVVPAEEHALKIAAAREAIGDSDFFLVART 180 (318)
T ss_dssp SSEEEEECTTCSSSHHHHHHHHHHHHHTTCCEEEEECBCSSCCCSSSSCCCBCCHHHHHHHHHHHHHHHTTSCCEEEEEE
T ss_pred CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCccccCCCCCccCCHHHHHHHHHHHHHhcccCCcEEEEee
Confidence 455544332 3488888888999999999999996542 2335567899998843 55443 67
Q ss_pred eCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEec--C----CCCCHHHHHHHHHcC
Q 014285 253 DANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVAD--E----SCRSLNDVQKVMQEN 326 (427)
Q Consensus 253 DAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~d--E----~~~~~~~~~~ll~~~ 326 (427)
|+......+++++.++++.+.|-...|+|-+ + +.+.++++++ ..++|+... | ...+ .+++-+.+
T Consensus 181 da~a~~gl~~ai~Ra~Ay~eAGAd~i~~e~~-~--~~e~~~~i~~----~l~~P~lan~~~~g~~~~~~---~~eL~~lG 250 (318)
T 1zlp_A 181 DARAPHGLEEGIRRANLYKEAGADATFVEAP-A--NVDELKEVSA----KTKGLRIANMIEGGKTPLHT---PEEFKEMG 250 (318)
T ss_dssp CTHHHHHHHHHHHHHHHHHHTTCSEEEECCC-C--SHHHHHHHHH----HSCSEEEEEECTTSSSCCCC---HHHHHHHT
T ss_pred HHhhhcCHHHHHHHHHHHHHcCCCEEEEcCC-C--CHHHHHHHHH----hcCCCEEEEeccCCCCCCCC---HHHHHHcC
Confidence 8775445689999999999988666799975 3 5678888987 567898532 2 1223 33444443
Q ss_pred CCcEEEeCCCCc-c-HHHHHHHHHHHHHcC
Q 014285 327 LASVVNIKLAKF-G-VLGTLQIIKATRKSG 354 (427)
Q Consensus 327 a~~~i~lk~~~~-G-i~~~~~~~~~A~~~g 354 (427)
+..+..-+... - .....+.++.-++.|
T Consensus 251 -v~~v~~~~~~~raa~~a~~~~~~~l~~~g 279 (318)
T 1zlp_A 251 -FHLIAHSLTAVYATARALVNIMKILKEKG 279 (318)
T ss_dssp -CCEEEECSHHHHHHHHHHHHHHHHHHHHS
T ss_pred -CeEEEEchHHHHHHHHHHHHHHHHHHHcC
Confidence 66666554433 2 333344444434433
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=90.97 E-value=2.8 Score=40.87 Aligned_cols=134 Identities=15% Similarity=0.182 Sum_probs=86.2
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcCCc-EEEEeccC-------Cchhh----HHHHHHHHHhC--C-CcEEEEeCCCCC
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLGFS-TLKLNVGR-------NITAD----FDVLQAIHAVH--P-HCSFILDANEGY 258 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~-~iKlKiG~-------~~~~d----~~~l~~ir~~~--~-~~~L~vDAN~~~ 258 (427)
.|+..++...+++++.+.++.+.+.||. .|-+.++. .+..| .+.++++|+.. | -++|+.| +
T Consensus 129 ~pvivsI~g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~G~~~l~~~~e~l~~il~av~~~~~~PV~vKi~p~----~ 204 (345)
T 3oix_A 129 KNHFLSLVGMSPEETHTILXMVEASKYQGLVELNLSCPNVPGXPQIAYDFETTDQILSEVFTYFTKPLGIKLPPY----F 204 (345)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHSSCCSEEEEECSCCCSTTCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCC----C
T ss_pred CCEEEEecCCCHHHHHHHHHHHhccCCCcEEEEecCCCCcCCchhhcCCHHHHHHHHHHHHHHhCCCeEEEECCC----C
Confidence 4555677667899998888888778998 89999872 23233 44566666642 3 2455544 6
Q ss_pred CHHHHHHHHHHhhhCCCCC--c--------eEe--CCC---------------CCCChhhHHHHHHhhcccc--CCeEEe
Q 014285 259 TSEEAVEVLGKLNDMGVIP--V--------LFE--QPV---------------HRDDWSGLHDVSNFARDTY--GISVVA 309 (427)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~--~--------~iE--qP~---------------~~~d~~~~~~L~~~~r~~~--~iPIa~ 309 (427)
+.++..+.++.+...++.. . -|. .|. ++-.++..+++++ .. .+||..
T Consensus 205 ~~~~~a~~~~~aga~~i~~int~nt~g~~~~i~~~~~~~~~~~~~gGlSG~ai~p~a~~~v~~i~~----~~~~~ipIIg 280 (345)
T 3oix_A 205 DIVHFDQAAAIFNXYPLTFVNCINSIGNGLVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFYK----RLNPSIQIIG 280 (345)
T ss_dssp CHHHHHHHHHHHTTSCCSEEEECCCEEEEECEETTEESCSGGGGEEEEEEGGGHHHHHHHHHHHHT----TSCTTSEEEE
T ss_pred CHHHHHHHHHHhCCCceEEEEeecccccceeeccCccccccccccCCcCCccccHHHHHHHHHHHH----HcCCCCcEEE
Confidence 7777677777665554420 0 022 221 1111334445543 55 699999
Q ss_pred cCCCCCHHHHHHHHHcCCCcEEEeCCC
Q 014285 310 DESCRSLNDVQKVMQENLASVVNIKLA 336 (427)
Q Consensus 310 dE~~~~~~~~~~ll~~~a~~~i~lk~~ 336 (427)
.=-+.+..|+.+.+..+ +|.|++=-.
T Consensus 281 ~GGI~s~~da~~~l~aG-Ad~V~igra 306 (345)
T 3oix_A 281 TGGVXTGRDAFEHILCG-ASMVQIGTA 306 (345)
T ss_dssp ESSCCSHHHHHHHHHHT-CSEEEESHH
T ss_pred ECCCCChHHHHHHHHhC-CCEEEEChH
Confidence 98999999999999876 788887544
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=90.87 E-value=0.89 Score=43.16 Aligned_cols=93 Identities=12% Similarity=0.197 Sum_probs=67.6
Q ss_pred CCCHHHHHHHHHHhhhCCCCCceEeCCC--C-------CCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCC
Q 014285 257 GYTSEEAVEVLGKLNDMGVIPVLFEQPV--H-------RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL 327 (427)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~~~iEqP~--~-------~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a 327 (427)
.++.++.++++++|++.++. +||.=. . .++++.++.++ +..++|++.- +.+..+++++++.+
T Consensus 22 ~~~~e~k~~i~~~L~~~Gv~--~IE~g~~~~~~~~p~~~~~~e~~~~i~----~~~~~~v~~l--~~n~~~i~~a~~~G- 92 (295)
T 1ydn_A 22 FVPTADKIALINRLSDCGYA--RIEATSFVSPKWVPQLADSREVMAGIR----RADGVRYSVL--VPNMKGYEAAAAAH- 92 (295)
T ss_dssp CCCHHHHHHHHHHHTTTTCS--EEEEEECSCTTTCGGGTTHHHHHHHSC----CCSSSEEEEE--CSSHHHHHHHHHTT-
T ss_pred CcCHHHHHHHHHHHHHcCcC--EEEEccCcCccccccccCHHHHHHHHH----hCCCCEEEEE--eCCHHHHHHHHHCC-
Confidence 47999999999999999985 899833 1 23444455553 2457888442 26888999999876
Q ss_pred CcEEEeCC--C--------Cc---c-HHHHHHHHHHHHHcCCcEE
Q 014285 328 ASVVNIKL--A--------KF---G-VLGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 328 ~~~i~lk~--~--------~~---G-i~~~~~~~~~A~~~gi~~~ 358 (427)
++.|.+.. + .. + +..+.++++.|+++|+.+.
T Consensus 93 ~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~ 137 (295)
T 1ydn_A 93 ADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIR 137 (295)
T ss_dssp CSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 66777763 3 22 3 6667888999999999986
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=90.71 E-value=4.7 Score=37.99 Aligned_cols=131 Identities=16% Similarity=0.174 Sum_probs=79.8
Q ss_pred eeeeeecCCCHHHHHHHHHHHhh-cCCcEEEEeccC------------CchhhHHHHHHHHHh-CCCcEEEEeCCCCCCH
Q 014285 195 STAITIPAVSPAEASELASKYCK-LGFSTLKLNVGR------------NITADFDVLQAIHAV-HPHCSFILDANEGYTS 260 (427)
Q Consensus 195 p~~~~i~~~~~~~~~~~~~~~~~-~Gf~~iKlKiG~------------~~~~d~~~l~~ir~~-~~~~~L~vDAN~~~s~ 260 (427)
|+..++...+++++.+.++.+.+ .|+..+.+.++. +.+.-.+.++++|+. .--+-+++=. .++
T Consensus 100 p~~v~l~~~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~~~~~~~eii~~v~~~~~~pv~vk~~~--~~~- 176 (311)
T 1ep3_A 100 PIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVSKVPLYVKLSP--NVT- 176 (311)
T ss_dssp CEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHCSSCEEEEECS--CSS-
T ss_pred cEEEEEcCCCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcCCHHHHHHHHHHHHHhcCCCEEEEECC--ChH-
Confidence 44455555678888777777766 899999998762 222336778888885 3223333322 222
Q ss_pred HHHHHHHHHhhhCCCCCceEeC----------CCCC--------------CC----hhhHHHHHHhhccccCCeEEecCC
Q 014285 261 EEAVEVLGKLNDMGVIPVLFEQ----------PVHR--------------DD----WSGLHDVSNFARDTYGISVVADES 312 (427)
Q Consensus 261 ~~A~~~l~~L~~~~l~~~~iEq----------P~~~--------------~d----~~~~~~L~~~~r~~~~iPIa~dE~ 312 (427)
+..++++.+++.++. +|-= +-.. .. ++..++++ +.+.+||...=-
T Consensus 177 -~~~~~a~~l~~~G~d--~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~----~~~~ipvia~GG 249 (311)
T 1ep3_A 177 -DIVPIAKAVEAAGAD--GLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVA----QDVDIPIIGMGG 249 (311)
T ss_dssp -CSHHHHHHHHHTTCS--EEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHH----TTCSSCEEECSS
T ss_pred -HHHHHHHHHHHcCCC--EEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHHH----HhcCCCEEEECC
Confidence 234456666666654 3321 1000 00 12333443 467899999888
Q ss_pred CCCHHHHHHHHHcCCCcEEEeCCC
Q 014285 313 CRSLNDVQKVMQENLASVVNIKLA 336 (427)
Q Consensus 313 ~~~~~~~~~ll~~~a~~~i~lk~~ 336 (427)
+.+..++.++++.+ +|.+++=-.
T Consensus 250 I~~~~d~~~~l~~G-Ad~V~vg~~ 272 (311)
T 1ep3_A 250 VANAQDVLEMYMAG-ASAVAVGTA 272 (311)
T ss_dssp CCSHHHHHHHHHHT-CSEEEECTH
T ss_pred cCCHHHHHHHHHcC-CCEEEECHH
Confidence 89999999999887 888887543
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=90.58 E-value=1.6 Score=41.60 Aligned_cols=126 Identities=13% Similarity=0.096 Sum_probs=86.1
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccC--------------CchhhHHHHHHHHHh--CCCc--EEEEeCCCCCCHHHHHH
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGR--------------NITADFDVLQAIHAV--HPHC--SFILDANEGYTSEEAVE 265 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~--------------~~~~d~~~l~~ir~~--~~~~--~L~vDAN~~~s~~~A~~ 265 (427)
+++.+.+.++++.+.|...+||--|. +.++-.++|+++++. ++++ .-|-|+......++|++
T Consensus 92 ~~~~~~~~v~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtda~~~~gl~~ai~ 171 (295)
T 1xg4_A 92 SAFNVARTVKSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAIE 171 (295)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECCHHHHCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCeEEEECCCCCCcccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEEEecHHhhhcCHHHHHH
Confidence 78888888999989999999997652 223456788888875 4554 44778765456799999
Q ss_pred HHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEe--cCC-CCCHHHHHHHHHcCCCcEEEeCCCC
Q 014285 266 VLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA--DES-CRSLNDVQKVMQENLASVVNIKLAK 337 (427)
Q Consensus 266 ~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~--dE~-~~~~~~~~~ll~~~a~~~i~lk~~~ 337 (427)
.++++++.|....|+|-+ + +++.++++++ ..++|+.. .|. .......+++-+. .++.+..-.+.
T Consensus 172 ra~ay~eAGAd~i~~e~~-~--~~~~~~~i~~----~~~iP~~~N~~~~g~~p~~~~~eL~~~-G~~~v~~~~~~ 238 (295)
T 1xg4_A 172 RAQAYVEAGAEMLFPEAI-T--ELAMYRQFAD----AVQVPILANITEFGATPLFTTDELRSA-HVAMALYPLSA 238 (295)
T ss_dssp HHHHHHHTTCSEEEETTC-C--SHHHHHHHHH----HHCSCBEEECCSSSSSCCCCHHHHHHT-TCSEEEESSHH
T ss_pred HHHHHHHcCCCEEEEeCC-C--CHHHHHHHHH----HcCCCEEEEecccCCCCCCCHHHHHHc-CCCEEEEChHH
Confidence 999999988666799975 3 5788889987 46788743 331 1111223444444 47776665443
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=90.50 E-value=0.34 Score=50.55 Aligned_cols=146 Identities=14% Similarity=0.111 Sum_probs=92.5
Q ss_pred HHHHHHHHhhcCCcEEEEeccC--C---------chhhHHHHHHHHHhCC--CcEEEEeCC-------------------
Q 014285 208 ASELASKYCKLGFSTLKLNVGR--N---------ITADFDVLQAIHAVHP--HCSFILDAN------------------- 255 (427)
Q Consensus 208 ~~~~~~~~~~~Gf~~iKlKiG~--~---------~~~d~~~l~~ir~~~~--~~~L~vDAN------------------- 255 (427)
+.+.++++.+.|...+=+--+. + ...+.+.++.+.+.++ .+-+.+|+.
T Consensus 349 ~~~~a~~~l~aGad~V~igt~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ivv~iD~~~~~~~~~~~~~~~~~~~~~ 428 (555)
T 1jvn_A 349 ALEVASLYFRSGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEY 428 (555)
T ss_dssp HHHHHHHHHHHTCSEEEECHHHHHHHHHHHHTTSCCCSCSHHHHHHHHHCGGGEEEEECEEEEEESSGGGCSSCCEECSS
T ss_pred HHHHHHHHHHcCCCEEEECCHHhhCchhhccccccccCHHHHHHHHHHhCCCcEEEEEEccccccccccccccccccccc
Confidence 4566777888886644333221 0 0113467888888654 488899983
Q ss_pred ----C-----------CCCH---HHHHHHHHHhhhCCCCCceEeCCC------CCCChhhHHHHHHhhccccCCeEEecC
Q 014285 256 ----E-----------GYTS---EEAVEVLGKLNDMGVIPVLFEQPV------HRDDWSGLHDVSNFARDTYGISVVADE 311 (427)
Q Consensus 256 ----~-----------~~s~---~~A~~~l~~L~~~~l~~~~iEqP~------~~~d~~~~~~L~~~~r~~~~iPIa~dE 311 (427)
+ +|+. -++.++++.+++++.. ..+=..+ .--|++.++++++ .+++||.+.=
T Consensus 429 ~~~~g~~~~~~~v~~~Gw~~~~~~~~~e~a~~~~~~Ga~-~il~t~~~~dG~~~G~d~~li~~l~~----~~~iPVIasG 503 (555)
T 1jvn_A 429 PGPNGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAG-EILLNCIDKDGSNSGYDLELIEHVKD----AVKIPVIASS 503 (555)
T ss_dssp CCTTCCCEEEEEEEETTTTEEEEEEHHHHHHHHHHTTCC-EEEECCGGGTTTCSCCCHHHHHHHHH----HCSSCEEECS
T ss_pred cCCCCCcceeEEEEEecCccCCCCCHHHHHHHHHHcCCC-EEEEeCCCCCCCCCCCCHHHHHHHHH----hCCccEEEEC
Confidence 3 2421 2356788888887764 2332222 2237888888875 5789998877
Q ss_pred CCCCHHHHHHHHHcCCCcEEEeCCCCc-cHHHHHHHHHHHHHcCCcEE
Q 014285 312 SCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 312 ~~~~~~~~~~ll~~~a~~~i~lk~~~~-Gi~~~~~~~~~A~~~gi~~~ 358 (427)
-+.+..|++++++...++.+++--... |-....++.+..++.|+++-
T Consensus 504 Gi~s~~d~~~~~~~~G~~gvivg~a~~~~~~~~~e~~~~l~~~gi~~r 551 (555)
T 1jvn_A 504 GAGVPEHFEEAFLKTRADACLGAGMFHRGEFTVNDVKEYLLEHGLKVR 551 (555)
T ss_dssp CCCSHHHHHHHHHHSCCSEEEESHHHHTTSCCHHHHHHHHHHTTCCCC
T ss_pred CCCCHHHHHHHHHhcCChHHHHHHHHHcCCCCHHHHHHHHHHCCCccc
Confidence 889999999999843466665543333 32234556667788888753
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=90.30 E-value=6.4 Score=37.30 Aligned_cols=130 Identities=12% Similarity=0.027 Sum_probs=84.9
Q ss_pred CCCHHHHHHHHHHHhhcCCcEEEEeccC----------------CchhhHHHHHHHHHhC--CCc--EEEEeCC-CCCCH
Q 014285 202 AVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAVH--PHC--SFILDAN-EGYTS 260 (427)
Q Consensus 202 ~~~~~~~~~~~~~~~~~Gf~~iKlKiG~----------------~~~~d~~~l~~ir~~~--~~~--~L~vDAN-~~~s~ 260 (427)
..++++..+.++++.+.|-..+|+--+. +.++-+++|+++++.. ++. .=|-|+. .....
T Consensus 86 yg~~~~~~~~v~~l~~aGa~gv~iED~~~~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~~~~~i~aRtda~~a~~g~ 165 (290)
T 2hjp_A 86 FGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQ 165 (290)
T ss_dssp TSSHHHHHHHHHHHHHHTCSEEEEECBCSSCCC-------CCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTTTTTCCH
T ss_pred CCCHHHHHHHHHHHHHhCCeEEEEcCCCCCccccccccCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHhhccccH
Confidence 3478888888999999999999997542 1223377888888853 454 4478887 66779
Q ss_pred HHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCC
Q 014285 261 EEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKL 335 (427)
Q Consensus 261 ~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~ 335 (427)
++|++.++++.+.|-...|+|--++ +.+.++++++.+ ..++|+...=.......+.++-+.+.+..+..-+
T Consensus 166 ~~ai~Ra~ay~eAGAd~i~~e~~~~--~~~~~~~i~~~~--~~~vP~i~n~~~~~~~~~~eL~~lG~v~~v~~~~ 236 (290)
T 2hjp_A 166 QEAVRRGQAYEEAGADAILIHSRQK--TPDEILAFVKSW--PGKVPLVLVPTAYPQLTEADIAALSKVGIVIYGN 236 (290)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCCCS--SSHHHHHHHHHC--CCSSCEEECGGGCTTSCHHHHHTCTTEEEEEECS
T ss_pred HHHHHHHHHHHHcCCcEEEeCCCCC--CHHHHHHHHHHc--CCCCCEEEeccCCCCCCHHHHHhcCCeeEEEech
Confidence 9999999999998866669998333 346678888632 1238987531100111234444433355555444
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=90.12 E-value=10 Score=34.06 Aligned_cols=141 Identities=14% Similarity=0.095 Sum_probs=93.0
Q ss_pred ecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCce
Q 014285 200 IPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVL 279 (427)
Q Consensus 200 i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~ 279 (427)
+...++++..+.++++.+.|.+.+.+..-. ....+.++.+++.++++.+..+. -.+.+++...++.=.+ +
T Consensus 22 ~r~~~~~~~~~~~~al~~gGv~~iel~~k~--~~~~~~i~~l~~~~~~~~vgagt--vi~~d~~~~A~~aGAd------~ 91 (214)
T 1wbh_A 22 IVVKKLEHAVPMAKALVAGGVRVLNVTLRT--ECAVDAIRAIAKEVPEAIVGAGT--VLNPQQLAEVTEAGAQ------F 91 (214)
T ss_dssp ECCSSGGGHHHHHHHHHHTTCCEEEEESCS--TTHHHHHHHHHHHCTTSEEEEES--CCSHHHHHHHHHHTCS------C
T ss_pred EECCCHHHHHHHHHHHHHcCCCEEEEeCCC--hhHHHHHHHHHHHCcCCEEeeCE--EEEHHHHHHHHHcCCC------E
Confidence 344678888888999999999999998632 34466888888888877666654 6677765554443333 2
Q ss_pred EeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCC-cc-HHHHHHHHHHHHHc-CCc
Q 014285 280 FEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK-FG-VLGTLQIIKATRKS-GLH 356 (427)
Q Consensus 280 iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~-~G-i~~~~~~~~~A~~~-gi~ 356 (427)
+=-| ..| ....+.++ ..++|+..| +.++.++.++++.+ +||+-+=|.. .| +.... ++.... +++
T Consensus 92 v~~p--~~d-~~v~~~~~----~~g~~~i~G--~~t~~e~~~A~~~G-ad~v~~Fpa~~~gG~~~lk---~i~~~~~~ip 158 (214)
T 1wbh_A 92 AISP--GLT-EPLLKAAT----EGTIPLIPG--ISTVSELMLGMDYG-LKEFKFFPAEANGGVKALQ---AIAGPFSQVR 158 (214)
T ss_dssp EEES--SCC-HHHHHHHH----HSSSCEEEE--ESSHHHHHHHHHTT-CCEEEETTTTTTTHHHHHH---HHHTTCTTCE
T ss_pred EEcC--CCC-HHHHHHHH----HhCCCEEEe--cCCHHHHHHHHHCC-CCEEEEecCccccCHHHHH---HHhhhCCCCe
Confidence 3223 333 34455554 477888776 88899998888765 8999886643 23 33322 233445 799
Q ss_pred EEEcccC
Q 014285 357 LMIDGMI 363 (427)
Q Consensus 357 ~~~~s~~ 363 (427)
++..+-+
T Consensus 159 vvaiGGI 165 (214)
T 1wbh_A 159 FCPTGGI 165 (214)
T ss_dssp EEEBSSC
T ss_pred EEEECCC
Confidence 8877644
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=89.95 E-value=1.2 Score=40.93 Aligned_cols=94 Identities=11% Similarity=0.081 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHhhhCCCCCceEeCCCCCCC-hhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCC
Q 014285 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDD-WSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK 337 (427)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d-~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~ 337 (427)
+++++.+++++|-+-|+. +||=++...+ .+.++++++. --.+-|..| .+.+..+++.+++.+ ++++.. |.
T Consensus 44 ~~~~a~~~a~al~~gGi~--~iEvt~~t~~a~e~I~~l~~~---~~~~~iGaG-TVlt~~~a~~Ai~AG-A~fIvs-P~- 114 (232)
T 4e38_A 44 NAEDIIPLGKVLAENGLP--AAEITFRSDAAVEAIRLLRQA---QPEMLIGAG-TILNGEQALAAKEAG-ATFVVS-PG- 114 (232)
T ss_dssp SGGGHHHHHHHHHHTTCC--EEEEETTSTTHHHHHHHHHHH---CTTCEEEEE-CCCSHHHHHHHHHHT-CSEEEC-SS-
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCCCCHHHHHHHHHHh---CCCCEEeEC-CcCCHHHHHHHHHcC-CCEEEe-CC-
Confidence 578999999999999986 9999887544 4456666652 123445555 588899999999987 566653 22
Q ss_pred ccHHHHHHHHHHHHHcCCcEEEcccCch
Q 014285 338 FGVLGTLQIIKATRKSGLHLMIDGMIET 365 (427)
Q Consensus 338 ~Gi~~~~~~~~~A~~~gi~~~~~s~~es 365 (427)
+ ..++++.|+++|++++++.+.-+
T Consensus 115 --~--~~~vi~~~~~~gi~~ipGv~Tpt 138 (232)
T 4e38_A 115 --F--NPNTVRACQEIGIDIVPGVNNPS 138 (232)
T ss_dssp --C--CHHHHHHHHHHTCEEECEECSHH
T ss_pred --C--CHHHHHHHHHcCCCEEcCCCCHH
Confidence 1 25678889999999999987543
|
| >4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=89.71 E-value=3.5 Score=40.27 Aligned_cols=118 Identities=14% Similarity=0.252 Sum_probs=73.8
Q ss_pred HHHHHHHhhcCCcEEEEeccC------------C---------ch----hhHHHHHHHHH-hCCC-cEEEEeCCC----C
Q 014285 209 SELASKYCKLGFSTLKLNVGR------------N---------IT----ADFDVLQAIHA-VHPH-CSFILDANE----G 257 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG~------------~---------~~----~d~~~l~~ir~-~~~~-~~L~vDAN~----~ 257 (427)
.+.|+..+++||..|.|+.+. + ++ -=++.+++||+ ++++ +-+|+-++. .
T Consensus 155 ~~AA~rA~~AGFDgVEIH~ahGYLl~QFLSp~tN~RtDeYGGS~eNR~Rf~~Eii~avr~~vg~~~v~vRls~~~~~~g~ 234 (358)
T 4a3u_A 155 EKAARHALKAGFDGVQIHAANGYLIDEFIRDSTNHRHDEYGGAVENRIRLLKDVTERVIATIGKERTAVRLSPNGEIQGT 234 (358)
T ss_dssp HHHHHHHHHTTCSEEEEEECTTSHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECCSSCBTTB
T ss_pred HHHHHHHHHcCCCeEeecccCCCcHHhceecccCCeeCCCCCCHHHHHHHHHHHHHHHHHHcCccceEEEeccCcccCCC
Confidence 445677788999999999852 1 11 12667899998 5655 556665542 2
Q ss_pred C---CHHHHHHHHHHhhhCCCCCceEe-------CCCCCCChhhH-HHHHHhhccccCCeEEecCCCCCHHHHHHHHHcC
Q 014285 258 Y---TSEEAVEVLGKLNDMGVIPVLFE-------QPVHRDDWSGL-HDVSNFARDTYGISVVADESCRSLNDVQKVMQEN 326 (427)
Q Consensus 258 ~---s~~~A~~~l~~L~~~~l~~~~iE-------qP~~~~d~~~~-~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~ 326 (427)
+ +.++.+..++.+.+.++. +++ .+........+ ++++ +....||+.+- ..+.+..+++|+.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~a~~ik----~~~~~~v~~~g-~~~~~~ae~~l~~G 307 (358)
T 4a3u_A 235 VDSHPEQVFIPAAKMLSDLDIA--FLGMREGAVDGTFGKTDQPKLSPEIR----KVFKPPLVLNQ-DYTFETAQAALDSG 307 (358)
T ss_dssp CCSSTHHHHHHHHHHHHHHTCS--EEEEECCBTTCSSSBCSSCCCHHHHH----HHCCSCEEEES-SCCHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHhhhccCcc--ccccccccccCcccccccHHHHHHHH----HhcCCcEEEeC-CCCHHHHHHHHHcC
Confidence 2 345556777888877653 333 22222222222 2333 34667887763 56888899999999
Q ss_pred CCcEEEe
Q 014285 327 LASVVNI 333 (427)
Q Consensus 327 a~~~i~l 333 (427)
.+|.|-+
T Consensus 308 ~aD~V~~ 314 (358)
T 4a3u_A 308 VADAISF 314 (358)
T ss_dssp SCSEEEE
T ss_pred CceEeHh
Confidence 9998654
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=89.05 E-value=2.9 Score=40.91 Aligned_cols=130 Identities=15% Similarity=0.118 Sum_probs=85.3
Q ss_pred eeeeeeecCCCHHHHHHHHHHHh---hcCCcEEEEeccC-------Cc----hhhHHHHHHHHHhC--C-CcEEEEeCCC
Q 014285 194 LSTAITIPAVSPAEASELASKYC---KLGFSTLKLNVGR-------NI----TADFDVLQAIHAVH--P-HCSFILDANE 256 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~---~~Gf~~iKlKiG~-------~~----~~d~~~l~~ir~~~--~-~~~L~vDAN~ 256 (427)
.|+..++...+++++.+.++.+. +.|+..|-+.+|. .+ +.-.+.++++|+.. | -++|+.|
T Consensus 127 ~pvivsI~G~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~~gg~~l~~~~e~~~~il~av~~~~~~PV~vKi~p~--- 203 (354)
T 4ef8_A 127 KPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVPGKPQVAYDFDAMRQCLTAVSEVYPHSFGVKMPPY--- 203 (354)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCSTTSCCGGGSHHHHHHHHHHHHHHCCSCEEEEECCC---
T ss_pred CcEEEEeccCCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCCCCchhhccCHHHHHHHHHHHHHhhCCCeEEEecCC---
Confidence 45556665668888877776665 5689999999872 23 33345677788753 3 2455544
Q ss_pred CCCHHHHHHHHHHhhhCC-CCCceE----------------eCC---------------CCCCChhhHHHHHHhhcccc-
Q 014285 257 GYTSEEAVEVLGKLNDMG-VIPVLF----------------EQP---------------VHRDDWSGLHDVSNFARDTY- 303 (427)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~-l~~~~i----------------EqP---------------~~~~d~~~~~~L~~~~r~~~- 303 (427)
|+.++..+.++.+.+.+ +. .| +.| +++-+++..+++++ ..
T Consensus 204 -~d~~~~~~~a~~~~~~Gg~d--~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i~p~a~~~i~~v~~----~~~ 276 (354)
T 4ef8_A 204 -FDFAHFDAAAEILNEFPKVQ--FITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYR----RCP 276 (354)
T ss_dssp -CSHHHHHHHHHHHHTCTTEE--EEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHH----HCT
T ss_pred -CCHHHHHHHHHHHHhCCCcc--EEEEecccCcceeeeccCCccccccccccCCCCCCCCchHHHHHHHHHHH----hCC
Confidence 67777777777777765 31 11 111 11223455566654 33
Q ss_pred CCeEEecCCCCCHHHHHHHHHcCCCcEEEeC
Q 014285 304 GISVVADESCRSLNDVQKVMQENLASVVNIK 334 (427)
Q Consensus 304 ~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk 334 (427)
.+||...=-+.+..|+.+++..+ ++.|++=
T Consensus 277 ~ipII~~GGI~s~~da~~~l~aG-Ad~V~vg 306 (354)
T 4ef8_A 277 GKLIFGCGGVYTGEDAFLHVLAG-ASMVQVG 306 (354)
T ss_dssp TSEEEEESCCCSHHHHHHHHHHT-EEEEEEC
T ss_pred CCCEEEECCcCCHHHHHHHHHcC-CCEEEEh
Confidence 69999998999999999999876 7888864
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=88.88 E-value=9.8 Score=34.20 Aligned_cols=115 Identities=12% Similarity=0.167 Sum_probs=74.0
Q ss_pred HHHHHHhhcCCcEEEEeccCC--c--hhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCC--CCceEe--
Q 014285 210 ELASKYCKLGFSTLKLNVGRN--I--TADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGV--IPVLFE-- 281 (427)
Q Consensus 210 ~~~~~~~~~Gf~~iKlKiG~~--~--~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l--~~~~iE-- 281 (427)
++++.+.+.|...+-+..... + +.-.+.++.+|+.+++..+.++.+ +++++....+.=.++ + .+.-++
T Consensus 92 ~~i~~~~~~Gad~V~l~~~~~~~~~~~~~~~~i~~i~~~~~~~~v~~~~~---t~~ea~~a~~~Gad~-i~~~v~g~~~~ 167 (234)
T 1yxy_A 92 TEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADIS---TFDEGLVAHQAGIDF-VGTTLSGYTPY 167 (234)
T ss_dssp HHHHHHHTTTCSEEEEECCSSCCTTCCCHHHHHHHHHHHCTTCEEEEECS---SHHHHHHHHHTTCSE-EECTTTTSSTT
T ss_pred HHHHHHHHcCCCEEEEcccccCCCCCccHHHHHHHHHHhCCCCeEEEeCC---CHHHHHHHHHcCCCE-EeeeccccCCC
Confidence 345566789999886665421 2 123678899999888888999875 677765554432221 0 000011
Q ss_pred -CCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeC
Q 014285 282 -QPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (427)
Q Consensus 282 -qP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk 334 (427)
++....+++.++++++ . ++||..+=-+.+..++.++++.+ ++.+.+=
T Consensus 168 ~~~~~~~~~~~i~~~~~----~-~ipvia~GGI~s~~~~~~~~~~G-ad~v~vG 215 (234)
T 1yxy_A 168 SRQEAGPDVALIEALCK----A-GIAVIAEGKIHSPEEAKKINDLG-VAGIVVG 215 (234)
T ss_dssp SCCSSSCCHHHHHHHHH----T-TCCEEEESCCCSHHHHHHHHTTC-CSEEEEC
T ss_pred CcCCCCCCHHHHHHHHh----C-CCCEEEECCCCCHHHHHHHHHCC-CCEEEEc
Confidence 2223345677777764 4 79998887888899999999876 7776653
|
| >4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D* | Back alignment and structure |
|---|
Probab=87.71 E-value=4.5 Score=38.99 Aligned_cols=142 Identities=13% Similarity=0.139 Sum_probs=89.8
Q ss_pred HHHHHHHHh-hcCCcEEEEec-cC-------CchhhHHHHHHHHHhCCCcEEEEe--CCCCCCHHHHHHHHHHhhhC-CC
Q 014285 208 ASELASKYC-KLGFSTLKLNV-GR-------NITADFDVLQAIHAVHPHCSFILD--ANEGYTSEEAVEVLGKLNDM-GV 275 (427)
Q Consensus 208 ~~~~~~~~~-~~Gf~~iKlKi-G~-------~~~~d~~~l~~ir~~~~~~~L~vD--AN~~~s~~~A~~~l~~L~~~-~l 275 (427)
..+.+++.+ +.|-..|-+.. +. +.++..+++++|++.. ++.|.|| .|.+++++-+.+-++..... ++
T Consensus 82 ~~~~A~~~v~~~GAdiIDIg~eStrP~~~~vs~ee~~~~V~~v~~~~-~vPlsIDg~~~~T~~~eV~eaAleagag~~~l 160 (323)
T 4djd_D 82 PGRWAQKCVAEYGADLIYLKLDGADPEGANHSVDQCVATVKEVLQAV-GVPLVVVGCGDVEKDHEVLEAVAEAAAGENLL 160 (323)
T ss_dssp HHHHHHHHHHTTCCSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHHC-CSCEEEECCSCHHHHHHHHHHHHHHTTTSCCE
T ss_pred HHHHHHHHHHHcCCCEEEEcCccCCCCCCCCCHHHHHHHHHHHHhhC-CceEEEECCCCCCCCHHHHHHHHHhcCCCCCe
Confidence 456677777 88999888864 22 2346677788888753 7899999 67777788777777777552 22
Q ss_pred CCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHH---HHHcCCC--cEEEeCCCC--cc--HHHHHHH
Q 014285 276 IPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQK---VMQENLA--SVVNIKLAK--FG--VLGTLQI 346 (427)
Q Consensus 276 ~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~---ll~~~a~--~~i~lk~~~--~G--i~~~~~~ 346 (427)
+..+.. ++++.+..+++ +.+.|+.+= +..+.+-+++ .+....+ +=|++||.. +| +...++.
T Consensus 161 -INsv~~----~~~~~m~~laa----~~g~~vVlm-h~~d~~~~~~l~~~a~~~GI~~e~IIlDPg~g~fgk~~e~~l~~ 230 (323)
T 4djd_D 161 -LGNAEQ----ENYKSLTAACM----VHKHNIIAR-SPLDINICKQLNILINEMNLPLDHIVIDPSIGGLGYGIEYSFSI 230 (323)
T ss_dssp -EEEEBT----TBCHHHHHHHH----HHTCEEEEE-CSSCHHHHHHHHHHHHTTTCCGGGEEEECCCCCTTTTHHHHHHH
T ss_pred -EEECCc----ccHHHHHHHHH----HhCCeEEEE-ccchHHHHHHHHHHHHHcCCCHHHEEEeCCCccccCCHHHHHHH
Confidence 123333 35678888876 678888772 1113333333 2333334 449999987 34 5555444
Q ss_pred HHHHH--------HcCCcEEEc
Q 014285 347 IKATR--------KSGLHLMID 360 (427)
Q Consensus 347 ~~~A~--------~~gi~~~~~ 360 (427)
.+..+ ..|.++.++
T Consensus 231 l~~ir~~al~~~~~lg~PvL~G 252 (323)
T 4djd_D 231 MERIRLGALQGDKMLSMPVICT 252 (323)
T ss_dssp HHHHHHHHHHTCGGGCSCBEEE
T ss_pred HHHHHHHhhcccccCCCCEEEe
Confidence 43333 579999886
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=87.66 E-value=4.3 Score=36.86 Aligned_cols=138 Identities=14% Similarity=0.144 Sum_probs=86.6
Q ss_pred CHHHHHHHHHHHhhcCCcEEEE--eccC----CchhhHHHHHHHHHhCCCcEEEE--eCCCCCCHHHHHHHHHHhhhCCC
Q 014285 204 SPAEASELASKYCKLGFSTLKL--NVGR----NITADFDVLQAIHAVHPHCSFIL--DANEGYTSEEAVEVLGKLNDMGV 275 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKl--KiG~----~~~~d~~~l~~ir~~~~~~~L~v--DAN~~~s~~~A~~~l~~L~~~~l 275 (427)
....-...+++..+.|+..+.+ .+|. +.+.-.+.++++++..+.+.+.+ .. ..|+.++..+.++.+.+.|.
T Consensus 68 ~~~~k~~~~~~A~~~Gad~Id~viN~g~~~~~~~~~~~~~i~~v~~a~~pv~vKvi~e~-~~l~~~~~~~~a~~a~eaGa 146 (225)
T 1mzh_A 68 KTSVKVKEAVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETPSAVHKVIVET-PYLNEEEIKKAVEICIEAGA 146 (225)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHTCTTSEEEEECCG-GGCCHHHHHHHHHHHHHHTC
T ss_pred chhhhHHHHHHHHHcCCCEEEEEecHHHHhcCChHHHHHHHHHHHHHhcCceEEEEEeC-CCCCHHHHHHHHHHHHHhCC
Confidence 3443345567777899999995 4442 33344456788888533444544 32 45899888889999988887
Q ss_pred CCceEeCCC----CCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCccHHHHHHHHHHHH
Q 014285 276 IPVLFEQPV----HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATR 351 (427)
Q Consensus 276 ~~~~iEqP~----~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~Gi~~~~~~~~~A~ 351 (427)
. +|-=-. ..-+++..+.+++.. ..++||...=-+.+..++.++++.+ ++. +|....+++.+-.+
T Consensus 147 d--~I~tstg~~~gga~~~~i~~v~~~v--~~~ipVia~GGI~t~~da~~~l~aG-A~~-------iG~s~~~~i~~~~~ 214 (225)
T 1mzh_A 147 D--FIKTSTGFAPRGTTLEEVRLIKSSA--KGRIKVKASGGIRDLETAISMIEAG-ADR-------IGTSSGISIAEEFL 214 (225)
T ss_dssp S--EEECCCSCSSSCCCHHHHHHHHHHH--TTSSEEEEESSCCSHHHHHHHHHTT-CSE-------EEESCHHHHHHHHH
T ss_pred C--EEEECCCCCCCCCCHHHHHHHHHHh--CCCCcEEEECCCCCHHHHHHHHHhC-chH-------HHHccHHHHHHHHH
Confidence 4 773221 111566677776521 1268997777888999999999876 553 35333455555444
Q ss_pred HcC
Q 014285 352 KSG 354 (427)
Q Consensus 352 ~~g 354 (427)
+.+
T Consensus 215 ~~~ 217 (225)
T 1mzh_A 215 KRH 217 (225)
T ss_dssp HHH
T ss_pred hcc
Confidence 443
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=87.04 E-value=7.9 Score=34.47 Aligned_cols=110 Identities=15% Similarity=0.166 Sum_probs=71.1
Q ss_pred HHHHHhhcCCcEEEEeccC--Cc-hhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceE--eCCC-
Q 014285 211 LASKYCKLGFSTLKLNVGR--NI-TADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF--EQPV- 284 (427)
Q Consensus 211 ~~~~~~~~Gf~~iKlKiG~--~~-~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~i--EqP~- 284 (427)
+++.+.+.|...+-+-... ++ +.-.+.++.+|+.+|+..+.+|.+ +++++.+. .+.+.. +| --+.
T Consensus 80 ~i~~~~~~Gad~v~l~~~~~~~p~~~~~~~i~~~~~~~~~~~v~~~~~---t~~e~~~~----~~~G~d--~i~~~~~g~ 150 (223)
T 1y0e_A 80 EVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIA---TVEEAKNA----ARLGFD--YIGTTLHGY 150 (223)
T ss_dssp HHHHHHHHTCSEEEEECSCSCCSSSCHHHHHHHHHHHCTTSEEEEECS---SHHHHHHH----HHTTCS--EEECTTTTS
T ss_pred HHHHHHhCCCCEEEEeeecccCcccCHHHHHHHHHHhCCCceEEecCC---CHHHHHHH----HHcCCC--EEEeCCCcC
Confidence 3445567898888776543 22 233577899999878888888875 67776553 333432 23 1110
Q ss_pred ---------CCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeC
Q 014285 285 ---------HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (427)
Q Consensus 285 ---------~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk 334 (427)
...+++.++++++ ..++||..+=-+.+..++.++++.+ ++.+.+=
T Consensus 151 t~~~~~~~~~~~~~~~~~~~~~----~~~ipvia~GGI~~~~~~~~~~~~G-ad~v~vG 204 (223)
T 1y0e_A 151 TSYTQGQLLYQNDFQFLKDVLQ----SVDAKVIAEGNVITPDMYKRVMDLG-VHCSVVG 204 (223)
T ss_dssp STTSTTCCTTHHHHHHHHHHHH----HCCSEEEEESSCCSHHHHHHHHHTT-CSEEEEC
T ss_pred cCCCCCCCCCcccHHHHHHHHh----hCCCCEEEecCCCCHHHHHHHHHcC-CCEEEEC
Confidence 1112344555554 4689999888888999999999986 7777663
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=86.79 E-value=5.4 Score=40.54 Aligned_cols=117 Identities=20% Similarity=0.264 Sum_probs=79.5
Q ss_pred HHHHHHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEe----
Q 014285 207 EASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFE---- 281 (427)
Q Consensus 207 ~~~~~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iE---- 281 (427)
+..+.++.+++.|+..+-+.... .+....+.++.+|+..|++.+.+- +..+.++|... .+.+.. +|-
T Consensus 237 ~~~~~a~~l~~aGvd~v~i~~~~G~~~~~~e~i~~i~~~~p~~pvi~g--~~~t~e~a~~l----~~~G~d--~I~v~~~ 308 (494)
T 1vrd_A 237 ETMERVEKLVKAGVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAG--NVATPEGTEAL----IKAGAD--AVKVGVG 308 (494)
T ss_dssp THHHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEE--EECSHHHHHHH----HHTTCS--EEEECSS
T ss_pred hHHHHHHHHHHhCCCEEEEEecCCchHHHHHHHHHHHHHCCCceEEeC--CcCCHHHHHHH----HHcCCC--EEEEcCC
Confidence 34567778889999999886653 456678899999998777777662 45678887443 344543 332
Q ss_pred ----------CCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEe
Q 014285 282 ----------QPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (427)
Q Consensus 282 ----------qP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~l 333 (427)
......++..+..+++.+ +..++||..+=-+.+..++.+++..+ ++.+++
T Consensus 309 ~G~~~~~~~~~~~g~p~~~~l~~v~~~~-~~~~ipvia~GGI~~~~di~kala~G-Ad~V~i 368 (494)
T 1vrd_A 309 PGSICTTRVVAGVGVPQLTAVMECSEVA-RKYDVPIIADGGIRYSGDIVKALAAG-AESVMV 368 (494)
T ss_dssp CSTTCHHHHHHCCCCCHHHHHHHHHHHH-HTTTCCEEEESCCCSHHHHHHHHHTT-CSEEEE
T ss_pred CCccccccccCCCCccHHHHHHHHHHHH-hhcCCCEEEECCcCCHHHHHHHHHcC-CCEEEE
Confidence 111112344455554322 23589999999999999999999987 788774
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=86.58 E-value=1.7 Score=39.80 Aligned_cols=153 Identities=9% Similarity=0.067 Sum_probs=87.5
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHH-hCCC-cEEEEeCC---C-------CCCH-
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHA-VHPH-CSFILDAN---E-------GYTS- 260 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~-~~~~-~~L~vDAN---~-------~~s~- 260 (427)
+|+-...++.++++ ++++.+.|-..+ -+|...-.+.+.+..+++ .+++ +.+.+|+. + +|..
T Consensus 75 ipvi~~ggI~~~~~----~~~~~~~Gad~V--~lg~~~l~~p~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~g~~~~ 148 (253)
T 1thf_D 75 IPFTVGGGIHDFET----ASELILRGADKV--SINTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKN 148 (253)
T ss_dssp SCEEEESSCCSHHH----HHHHHHTTCSEE--EESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEE
T ss_pred CCEEEeCCCCCHHH----HHHHHHcCCCEE--EEChHHHhChHHHHHHHHHcCCCcEEEEEEEEccCCcEEEEECCCccc
Confidence 45545555667765 444556786644 455422233445666655 4543 56889984 3 2421
Q ss_pred --HHHHHHHHHhhhCCCCCceEeCCCC------CCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEE
Q 014285 261 --EEAVEVLGKLNDMGVIPVLFEQPVH------RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVN 332 (427)
Q Consensus 261 --~~A~~~l~~L~~~~l~~~~iEqP~~------~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~ 332 (427)
....+.++.+.+.++....+ -.+. .-+++.++++++ .+++||..+=-+.+..++.++++.+ ++.+.
T Consensus 149 ~~~~~~e~~~~~~~~G~~~i~~-~~~~~~g~~~g~~~~~~~~l~~----~~~ipvia~GGI~~~~d~~~~~~~G-adgv~ 222 (253)
T 1thf_D 149 TGILLRDWVVEVEKRGAGEILL-TSIDRDGTKSGYDTEMIRFVRP----LTTLPIIASGGAGKMEHFLEAFLAG-ADAAL 222 (253)
T ss_dssp EEEEHHHHHHHHHHTTCSEEEE-EETTTTTSCSCCCHHHHHHHGG----GCCSCEEEESCCCSHHHHHHHHHTT-CSEEE
T ss_pred cCCCHHHHHHHHHHCCCCEEEE-EeccCCCCCCCCCHHHHHHHHH----hcCCCEEEECCCCCHHHHHHHHHcC-ChHHH
Confidence 12234455555555431122 1111 125778888874 5789999887888899999999754 67766
Q ss_pred eCCCCcc-HHHHHHHHHHHHHcCCcEE
Q 014285 333 IKLAKFG-VLGTLQIIKATRKSGLHLM 358 (427)
Q Consensus 333 lk~~~~G-i~~~~~~~~~A~~~gi~~~ 358 (427)
+=-..++ -....+..+..++.|+++-
T Consensus 223 vGsal~~~~~~~~~~~~~l~~~g~~~~ 249 (253)
T 1thf_D 223 AASVFHFREIDVRELKEYLKKHGVNVR 249 (253)
T ss_dssp ESHHHHTTCSCHHHHHHHHHHTTCCCC
T ss_pred HHHHHHcCCCCHHHHHHHHHHcCCccc
Confidence 5433332 1124455666778888764
|
| >3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=86.26 E-value=14 Score=36.98 Aligned_cols=112 Identities=13% Similarity=-0.023 Sum_probs=78.4
Q ss_pred eeeeeee--cCCCHHHHHHHHHHHhhcCCcEEEEec--------c-------CCchhhHHHHHHHHHh----CCCc--EE
Q 014285 194 LSTAITI--PAVSPAEASELASKYCKLGFSTLKLNV--------G-------RNITADFDVLQAIHAV----HPHC--SF 250 (427)
Q Consensus 194 ip~~~~i--~~~~~~~~~~~~~~~~~~Gf~~iKlKi--------G-------~~~~~d~~~l~~ir~~----~~~~--~L 250 (427)
+|+.+-+ +.+++..+.+.++.+.+.|.-.+-|-= | .+.++-+++|+++|+. +++. .-
T Consensus 153 ~PviaD~dtGfG~~~~v~~~vk~~~~aGaaGi~iEDq~~~~KkCGH~~gk~lv~~~e~v~rI~Aar~A~~~~g~d~~IiA 232 (439)
T 3i4e_A 153 APIVADAEAGFGGVLNAFELMKAMIEAGASGVHFEDQLASVKKCGHMGGKVLVPTREAVAKLTAARLAADVMGTPTVLVA 232 (439)
T ss_dssp CCEEEECTTTTSSHHHHHHHHHHHHHHTCSEEEEESBCGGGCBCSTTCBCCBCCHHHHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred CCeEEECCCCCCccHHHHHHHHHHHHcCCEEEEEeCCCCCccccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 6654443 334666677788888999998887742 1 1456778899988862 5664 34
Q ss_pred EEeCCCC----------------------------CCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccc
Q 014285 251 ILDANEG----------------------------YTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDT 302 (427)
Q Consensus 251 ~vDAN~~----------------------------~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~ 302 (427)
|.|+..+ ...++|++.+++..+ +-...|+|-+.+ +.+.++++++.++..
T Consensus 233 RTDa~~a~l~~s~~d~~d~~fi~G~r~~eg~~~~~~gldeAI~Ra~AY~~-GAD~if~E~~~~--~~eei~~f~~~v~~~ 309 (439)
T 3i4e_A 233 RTDAEAADLITSDIDDNDKPYLTGERTVEGFFRTKPGLEQAISRGLAYAP-YADLIWCETGKP--DLEYAKKFAEAIHKQ 309 (439)
T ss_dssp EECTTTCCEESCCCCTTTGGGEEEEECTTSCEEECCSHHHHHHHHHHHTT-TCSEEEECCSSC--CHHHHHHHHHHHHHH
T ss_pred EcCcccccccccccccccchhhcccCcccccccccCCHHHHHHHHHHHHh-hCCEEEecCCCC--CHHHHHHHHHHhccc
Confidence 8999653 458999999999988 655569988775 678889998765433
Q ss_pred cCCeEE
Q 014285 303 YGISVV 308 (427)
Q Consensus 303 ~~iPIa 308 (427)
.++++.
T Consensus 310 ~P~~~l 315 (439)
T 3i4e_A 310 FPGKLL 315 (439)
T ss_dssp STTCEE
T ss_pred CCceEE
Confidence 455443
|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=85.16 E-value=5.3 Score=37.13 Aligned_cols=92 Identities=13% Similarity=0.088 Sum_probs=66.8
Q ss_pred HHHHHHHhhcCCcEEEEeccC--------CchhhHHHHHHHHHh----CCC--cEEEEeCC-CCC-----CHHHHHHHHH
Q 014285 209 SELASKYCKLGFSTLKLNVGR--------NITADFDVLQAIHAV----HPH--CSFILDAN-EGY-----TSEEAVEVLG 268 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG~--------~~~~d~~~l~~ir~~----~~~--~~L~vDAN-~~~-----s~~~A~~~l~ 268 (427)
.+.++++.+.|-..+|+--|. +.++=.++|+++++. +.+ +.=|.|+. ++. ..+++++.++
T Consensus 96 ~~~~~~l~~aGa~gv~iEd~~~~~~k~l~~~~e~~~~I~a~~~a~~~~g~~~~v~aRtd~~~~g~~~~~~~~~~ai~ra~ 175 (255)
T 2qiw_A 96 ADLIAQILEAGAVGINVEDVVHSEGKRVREAQEHADYIAAARQAADVAGVDVVINGRTDAVKLGADVFEDPMVEAIKRIK 175 (255)
T ss_dssp HHHHHHHHHTTCCEEEECSEEGGGTTEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECHHHHCTTTSSSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEECCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCeEEEEEechhhccCCcchHHHHHHHHHHH
Confidence 566777888999999998662 345667889888875 766 55578873 222 2789999999
Q ss_pred HhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeE
Q 014285 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISV 307 (427)
Q Consensus 269 ~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPI 307 (427)
++++.|-...|+|-+ + +.+..+++++ ..++|+
T Consensus 176 a~~eAGAd~i~~e~~-~--~~~~~~~i~~----~~~~P~ 207 (255)
T 2qiw_A 176 LMEQAGARSVYPVGL-S--TAEQVERLVD----AVSVPV 207 (255)
T ss_dssp HHHHHTCSEEEECCC-C--SHHHHHHHHT----TCSSCB
T ss_pred HHHHcCCcEEEEcCC-C--CHHHHHHHHH----hCCCCE
Confidence 999987665689875 2 3567788886 455665
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=84.82 E-value=18 Score=33.99 Aligned_cols=146 Identities=11% Similarity=0.114 Sum_probs=82.8
Q ss_pred HHHHHhhcCCcEEEEecc-----------CCchhhHHHH----HHHHHhCCCcE--EE--EeCC--CCCCHHHHHHHHHH
Q 014285 211 LASKYCKLGFSTLKLNVG-----------RNITADFDVL----QAIHAVHPHCS--FI--LDAN--EGYTSEEAVEVLGK 269 (427)
Q Consensus 211 ~~~~~~~~Gf~~iKlKiG-----------~~~~~d~~~l----~~ir~~~~~~~--L~--vDAN--~~~s~~~A~~~l~~ 269 (427)
.+++..+.|++.+-+-+. .+.++.++++ +..++.+-.++ |. +++. ...+++++.++++.
T Consensus 84 ~i~~a~~~G~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~ 163 (295)
T 1ydn_A 84 GYEAAAAAHADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQ 163 (295)
T ss_dssp HHHHHHHTTCSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHH
Confidence 345566789998888753 3455666664 33344443333 22 3322 35689999999998
Q ss_pred hhhCCCCCceEeCCCCCCChhhHHHHHHhhccccC-CeEEecC---CCCCHHHHHHHHHcCCCcEEEeCCC---------
Q 014285 270 LNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG-ISVVADE---SCRSLNDVQKVMQENLASVVNIKLA--------- 336 (427)
Q Consensus 270 L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~-iPIa~dE---~~~~~~~~~~ll~~~a~~~i~lk~~--------- 336 (427)
+.+.+.....+=+..-........++-+.+++..+ +||...= .-.........++.+ ++.++.-..
T Consensus 164 ~~~~G~d~i~l~Dt~G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~an~l~Ai~aG-~~~vd~sv~GlG~cp~a~ 242 (295)
T 1ydn_A 164 LFSLGCHEVSLGDTIGRGTPDTVAAMLDAVLAIAPAHSLAGHYHDTGGRALDNIRVSLEKG-LRVFDASVGGLGGCPFAP 242 (295)
T ss_dssp HHHHTCSEEEEEETTSCCCHHHHHHHHHHHHTTSCGGGEEEEEBCTTSCHHHHHHHHHHHT-CCEEEEBTTCCSCBTTBT
T ss_pred HHhcCCCEEEecCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCcchHHHHHHHHHHhC-CCEEEeccccCCCCCCCC
Confidence 88888654456666554455555555555555665 7776531 222333446666665 556555331
Q ss_pred -CccHHHHHHHHHHHHHcCCcE
Q 014285 337 -KFGVLGTLQIIKATRKSGLHL 357 (427)
Q Consensus 337 -~~Gi~~~~~~~~~A~~~gi~~ 357 (427)
+.|-..+..++...+..|+..
T Consensus 243 g~~GN~~~e~lv~~l~~~g~~~ 264 (295)
T 1ydn_A 243 GAKGNVDTVAVVEMLHEMGFET 264 (295)
T ss_dssp TSCCBCBHHHHHHHHHHTTCBC
T ss_pred CCcCChhHHHHHHHHHhcCCCC
Confidence 334222444555556666543
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=84.57 E-value=2.9 Score=38.58 Aligned_cols=159 Identities=11% Similarity=0.059 Sum_probs=74.2
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCC-chh--hHHHHHHHHHh-C--C-CcEEEEeC---CC-------
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRN-ITA--DFDVLQAIHAV-H--P-HCSFILDA---NE------- 256 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~-~~~--d~~~l~~ir~~-~--~-~~~L~vDA---N~------- 256 (427)
+|+-...++.+++++. ++.+.|.. .+-+|.. ++. +.+.++.+.+. + . .+.+.+|+ ++
T Consensus 75 iPvi~~ggi~~~~~i~----~~~~~Gad--~v~lg~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~d~~~~~g~~~v~~~ 148 (266)
T 2w6r_A 75 LPIIASGGAGKMEHFL----EAFLAGAD--KALAASVFHFREIDMRELKEYLKKHGGSGQAVVVAIDAKRVDGEFMVFTH 148 (266)
T ss_dssp SCEEEESCCCSTHHHH----HHHHHTCS--EEECCCCC------CHHHHHHCC----CCCEEEEEEEEEEETTEEEEEET
T ss_pred CCEEEECCCCCHHHHH----HHHHcCCc--HhhhhHHHHhCCCCHHHHHHHHHHcCCCCCEEEEEEEEEecCCCEEEEEC
Confidence 4544444556666643 33345644 4455543 223 55666666543 4 2 45688887 33
Q ss_pred CCCH---HHHHHHHHHhhhCCCCCceEeCCCC------CCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCC
Q 014285 257 GYTS---EEAVEVLGKLNDMGVIPVLFEQPVH------RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL 327 (427)
Q Consensus 257 ~~s~---~~A~~~l~~L~~~~l~~~~iEqP~~------~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a 327 (427)
+|.. ....++++.+.+.+....++ ..+. .-+++.++++++ .+++||...=-+.+..++.++++.+
T Consensus 149 g~~~~~~~~~~e~~~~~~~~G~~~i~~-t~~~~~g~~~g~~~~~i~~l~~----~~~ipvia~GGI~~~ed~~~~~~~G- 222 (266)
T 2w6r_A 149 SGKKNTGILLRDWVVEVEKRGAGEILL-TSIDRDGTKSGYDTEMIRFVRP----LTTLPIIASGGAGKMEHFLEAFLAG- 222 (266)
T ss_dssp TTTEEEEEEHHHHHHHHHHTTCSEEEE-EETTTTTTCSCCCHHHHHHHGG----GCCSCEEEESCCCSHHHHHHHHHHT-
T ss_pred CCceecchhHHHHHHHHHHcCCCEEEE-EeecCCCCcCCCCHHHHHHHHH----HcCCCEEEeCCCCCHHHHHHHHHcC-
Confidence 2320 11234445555555432233 1211 125777778765 5789999887888899999999765
Q ss_pred CcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCc
Q 014285 328 ASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIE 364 (427)
Q Consensus 328 ~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~e 364 (427)
++.+.+=-..++ -....++.+..+++|+++-.-..+|
T Consensus 223 adgv~vgsal~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 260 (266)
T 2w6r_A 223 ADAALAASVFHFREIDMRELKEYLKKHGVNVRLEGLLE 260 (266)
T ss_dssp CSEEEESTTTC---------------------------
T ss_pred CHHHHccHHHHcCCCCHHHHHHHHHHCCCcccccchhh
Confidence 677777666664 3345566677788888765443333
|
| >2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X* | Back alignment and structure |
|---|
Probab=82.35 E-value=12 Score=34.96 Aligned_cols=146 Identities=13% Similarity=0.146 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHH----HHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCC-CCc
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRNITADFDVL----QAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGV-IPV 278 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l----~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l-~~~ 278 (427)
+.+...+.+++++++|-..+-+-.+...+++.+++ ++|++.. ++.|.||.- +++-+..-++.....++ ...
T Consensus 32 ~~~~a~~~a~~~v~~GAdiIDIg~~s~~~eE~~rv~~vi~~l~~~~-~~pisIDT~---~~~v~~aal~a~~Ga~iINdv 107 (271)
T 2yci_X 32 DPRPIQEWARRQAEKGAHYLDVNTGPTADDPVRVMEWLVKTIQEVV-DLPCCLDST---NPDAIEAGLKVHRGHAMINST 107 (271)
T ss_dssp CCHHHHHHHHHHHHTTCSEEEEECCSCSSCHHHHHHHHHHHHHHHC-CCCEEEECS---CHHHHHHHHHHCCSCCEEEEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEcCCcCchhHHHHHHHHHHHHHHhC-CCeEEEeCC---CHHHHHHHHHhCCCCCEEEEC
Confidence 56778889999999999998888876555566655 4455433 788999965 66766666666543332 011
Q ss_pred eEeCCCCCCChhhHHHHHHhhccccCCeEEe---cCC--CCCHH----HH----HHHHHcCC-CcEEEeCCCC--cc--H
Q 014285 279 LFEQPVHRDDWSGLHDVSNFARDTYGISVVA---DES--CRSLN----DV----QKVMQENL-ASVVNIKLAK--FG--V 340 (427)
Q Consensus 279 ~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~---dE~--~~~~~----~~----~~ll~~~a-~~~i~lk~~~--~G--i 340 (427)
+-+ .++++.+..+++ +.+.|+.+ ||. -.+.. .+ ..+.+.+- .+=|.+||.. +| .
T Consensus 108 s~~----~d~~~~~~~~~a----~~~~~vv~m~~d~~G~p~t~~~~~~~l~~~~~~a~~~Gi~~~~IilDPg~gfigk~~ 179 (271)
T 2yci_X 108 SAD----QWKMDIFFPMAK----KYEAAIIGLTMNEKGVPKDANDRSQLAMELVANADAHGIPMTELYIDPLILPVNVAQ 179 (271)
T ss_dssp CSC----HHHHHHHHHHHH----HHTCEEEEESCBTTBCCCSHHHHHHHHHHHHHHHHHTTCCGGGEEEECCCCCTTTST
T ss_pred CCC----ccccHHHHHHHH----HcCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHCCCCcccEEEecCCCccccCH
Confidence 222 133567777775 56777765 432 12222 22 22333331 2248889974 24 4
Q ss_pred H---HHHHHHHHHHHcC---CcEEEcc
Q 014285 341 L---GTLQIIKATRKSG---LHLMIDG 361 (427)
Q Consensus 341 ~---~~~~~~~~A~~~g---i~~~~~s 361 (427)
. ..++-++..++.+ .++.++-
T Consensus 180 ~~~~~~l~~l~~~~~~~~p~~p~l~G~ 206 (271)
T 2yci_X 180 EHAVEVLETIRQIKLMANPAPRTVLGL 206 (271)
T ss_dssp HHHHHHHHHHHHHTTSSSSCCEEEEEG
T ss_pred HHHHHHHHHHHHHHHhCCCCCCEEEee
Confidence 3 4466666666666 8888764
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=82.20 E-value=26 Score=30.82 Aligned_cols=149 Identities=16% Similarity=0.216 Sum_probs=86.1
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhC
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDM 273 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~ 273 (427)
.|+..++...+++++.+.++++.+.|.+.+-+.... ....+.++.+++.++ +.++|-+..-.+.++ ++...+.
T Consensus 7 ~~i~~~i~~~d~~~~~~~~~~~~~~G~~~i~l~~~~--~~~~~~i~~i~~~~~-~~l~vg~g~~~~~~~----i~~a~~~ 79 (212)
T 2v82_A 7 LPLIAILRGITPDEALAHVGAVIDAGFDAVEIPLNS--PQWEQSIPAIVDAYG-DKALIGAGTVLKPEQ----VDALARM 79 (212)
T ss_dssp SCEEEECTTCCHHHHHHHHHHHHHHTCCEEEEETTS--TTHHHHHHHHHHHHT-TTSEEEEECCCSHHH----HHHHHHT
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCC--hhHHHHHHHHHHhCC-CCeEEEeccccCHHH----HHHHHHc
Confidence 445556666788899999999999999999886542 233566676666433 345554334455553 3333344
Q ss_pred CCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCccHHHHHHHHHHHHHc
Q 014285 274 GVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKS 353 (427)
Q Consensus 274 ~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~Gi~~~~~~~~~A~~~ 353 (427)
+.. ++=-| ..+.+ +.+.++ +.+.++..+ +.+..++.+..+. .+|++.+.++. ..+...+.++++..
T Consensus 80 Gad--~V~~~--~~~~~-~~~~~~----~~g~~~~~g--~~t~~e~~~a~~~-G~d~v~v~~t~--~~g~~~~~~l~~~~ 145 (212)
T 2v82_A 80 GCQ--LIVTP--NIHSE-VIRRAV----GYGMTVCPG--CATATEAFTALEA-GAQALKIFPSS--AFGPQYIKALKAVL 145 (212)
T ss_dssp TCC--EEECS--SCCHH-HHHHHH----HTTCEEECE--ECSHHHHHHHHHT-TCSEEEETTHH--HHCHHHHHHHHTTS
T ss_pred CCC--EEEeC--CCCHH-HHHHHH----HcCCCEEee--cCCHHHHHHHHHC-CCCEEEEecCC--CCCHHHHHHHHHhc
Confidence 443 44322 22333 333332 457776665 7788888777765 48998875532 12223333444444
Q ss_pred C--CcEEEcccC
Q 014285 354 G--LHLMIDGMI 363 (427)
Q Consensus 354 g--i~~~~~s~~ 363 (427)
+ ++++..+-+
T Consensus 146 ~~~ipvia~GGI 157 (212)
T 2v82_A 146 PSDIAVFAVGGV 157 (212)
T ss_dssp CTTCEEEEESSC
T ss_pred cCCCeEEEeCCC
Confidence 4 888876533
|
| >3n2t_A Putative oxidoreductase; aldo/keto reductase superfamily, AKR, AKR11B4, TIM barrel; 2.00A {Gluconobacter oxydans} SCOP: c.1.7.0 | Back alignment and structure |
|---|
Probab=82.14 E-value=15 Score=35.43 Aligned_cols=158 Identities=9% Similarity=0.032 Sum_probs=93.0
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHH-HHHHHhCCCcE----EEEe---CCC-------CCCHHHHHHHHH
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRNITADFDVL-QAIHAVHPHCS----FILD---ANE-------GYTSEEAVEVLG 268 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l-~~ir~~~~~~~----L~vD---AN~-------~~s~~~A~~~l~ 268 (427)
+.++..+.++.+++.|++.|-.=-.-......+.| ++++..-.++. +... .++ .++++...+-++
T Consensus 50 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~G~sE~~lG~al~~~R~~v~I~TK~g~~~~~~~~~~~~~~~~~~~~~i~~~~e 129 (348)
T 3n2t_A 50 DDDNGVRTIHAALDEGINLIDTAPVYGFGHSEEIVGRALAEKPNKAHVATKLGLHWVGEDEKNMKVFRDSRPARIRKEVE 129 (348)
T ss_dssp THHHHHHHHHHHHHTTCCEEECCTTGGGGHHHHHHHHHHHHSCCCCEEEEEECEEEESSSTTTCEEEECCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEChhhcCCChHHHHHHHHHhhCCCeEEEEEeecCCCcCCCcccccccCCCCHHHHHHHHH
Confidence 45677788888899999987643211111223333 44443222332 2111 111 256665544332
Q ss_pred -HhhhCC---CCCceEeCCCCCC----ChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCccH
Q 014285 269 -KLNDMG---VIPVLFEQPVHRD----DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGV 340 (427)
Q Consensus 269 -~L~~~~---l~~~~iEqP~~~~----d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~Gi 340 (427)
.|+.++ +.++++-.|-+.. -|+.|.+|.+ .+.==+.|=|.++...++++++...++++|+..+..--
T Consensus 130 ~SL~rLg~dyiDl~~lH~p~~~~~~~e~~~al~~l~~-----~Gkir~iGvSn~~~~~l~~~~~~~~~~~~Q~~~nl~~~ 204 (348)
T 3n2t_A 130 DSLRRLRVETIDLEQIHWPDDKTPIDESARELQKLHQ-----DGKIRALGVSNFSPEQMDIFREVAPLATIQPPLNLFER 204 (348)
T ss_dssp HHHHHHTCSSEEEEEESSCCTTSCHHHHHHHHHHHHH-----TTSEEEEEEESCCHHHHHHHHHHSCCCEEECBCBTTBC
T ss_pred HHHHHhCCCcEEEEEecCCCCCCCHHHHHHHHHHHHH-----hCcceEEecCCCCHHHHHHHHHhCCccEEEeeecCccC
Confidence 233332 2224555565432 2455566653 34434556677899999999998889999988776531
Q ss_pred HHHHHHHHHHHHcCCcEEEcccCchh
Q 014285 341 LGTLQIIKATRKSGLHLMIDGMIETR 366 (427)
Q Consensus 341 ~~~~~~~~~A~~~gi~~~~~s~~es~ 366 (427)
..-.+++.+|+++||.++..+.+.+|
T Consensus 205 ~~e~~l~~~~~~~gi~v~a~spL~~G 230 (348)
T 3n2t_A 205 TIEKDILPYAEKHNAVVLAYGALCRG 230 (348)
T ss_dssp GGGGTHHHHHHHHTCEEEEBCTTGGG
T ss_pred chHHHHHHHHHHcCCeEEEeecccCc
Confidence 11246789999999999998877654
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=82.02 E-value=10 Score=33.31 Aligned_cols=92 Identities=21% Similarity=0.187 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHhhhCCCCCceEeCCCCCCCh-hhHHHHHHhhcccc--CCeEEecCCCCCHHHHHHHHHcCCCcEEEeC
Q 014285 258 YTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW-SGLHDVSNFARDTY--GISVVADESCRSLNDVQKVMQENLASVVNIK 334 (427)
Q Consensus 258 ~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~-~~~~~L~~~~r~~~--~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk 334 (427)
.+.+++.+.++.+.+.++. +||=-+...+. +.++++++ .. +.+|..+ ++.+..+++.+++.+ +|++ +-
T Consensus 19 ~~~~~~~~~~~~~~~~G~~--~iev~~~~~~~~~~i~~ir~----~~~~~~~ig~~-~v~~~~~~~~a~~~G-ad~i-v~ 89 (205)
T 1wa3_A 19 NSVEEAKEKALAVFEGGVH--LIEITFTVPDADTVIKELSF----LKEKGAIIGAG-TVTSVEQCRKAVESG-AEFI-VS 89 (205)
T ss_dssp SSHHHHHHHHHHHHHTTCC--EEEEETTSTTHHHHHHHTHH----HHHTTCEEEEE-SCCSHHHHHHHHHHT-CSEE-EC
T ss_pred CCHHHHHHHHHHHHHCCCC--EEEEeCCChhHHHHHHHHHH----HCCCCcEEEec-ccCCHHHHHHHHHcC-CCEE-Ec
Confidence 3688999999999998875 78743333232 23455543 33 4777776 467888888888765 8998 55
Q ss_pred CCCccHHHHHHHHHHHHHcCCcEEEcccC
Q 014285 335 LAKFGVLGTLQIIKATRKSGLHLMIDGMI 363 (427)
Q Consensus 335 ~~~~Gi~~~~~~~~~A~~~gi~~~~~s~~ 363 (427)
+... .++++.|+++|++++++...
T Consensus 90 ~~~~-----~~~~~~~~~~g~~vi~g~~t 113 (205)
T 1wa3_A 90 PHLD-----EEISQFCKEKGVFYMPGVMT 113 (205)
T ss_dssp SSCC-----HHHHHHHHHHTCEEECEECS
T ss_pred CCCC-----HHHHHHHHHcCCcEECCcCC
Confidence 5432 35778889999999987643
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=81.99 E-value=45 Score=33.57 Aligned_cols=164 Identities=12% Similarity=0.164 Sum_probs=97.4
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEeccCC--------chhhHHHHHHHHHhCCCcEEEEeC---CC-CCC--HHHH-HHHHH
Q 014285 204 SPAEASELASKYCKLGFSTLKLNVGRN--------ITADFDVLQAIHAVHPHCSFILDA---NE-GYT--SEEA-VEVLG 268 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKiG~~--------~~~d~~~l~~ir~~~~~~~L~vDA---N~-~~s--~~~A-~~~l~ 268 (427)
+.+++.+.++.+.+.|+..|-+-.|.. -+.|.++++.+++..++..+.+=. |. +|+ ++++ ...++
T Consensus 28 ~~~dkl~Ia~~L~~~Gv~~IE~g~~atF~~~~r~~~~d~~e~l~~i~~~~~~~~l~~l~R~~N~~G~~~~~ddv~~~~v~ 107 (464)
T 2nx9_A 28 RIDDMLPIAQQLDQIGYWSLECWGGATFDSCIRFLGEDPWQRLRLLKQAMPNTPLQMLLRGQNLLGYRHYADDVVDTFVE 107 (464)
T ss_dssp CGGGTGGGHHHHHTSCCSEEEEEETTHHHHHHHTTCCCHHHHHHHHHHHCSSSCEEEEECGGGTTSSSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCcCccccchhhccCCCHHHHHHHHHHhCCCCeEEEEeccccccCcccccchhhHHHHH
Confidence 456666777888889999999976542 256889999999866665554333 32 343 2333 45666
Q ss_pred HhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEE-----ecCCCCCHHHH----HHHHHcCCCcEEEeCCCC-c
Q 014285 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVV-----ADESCRSLNDV----QKVMQENLASVVNIKLAK-F 338 (427)
Q Consensus 269 ~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa-----~dE~~~~~~~~----~~ll~~~a~~~i~lk~~~-~ 338 (427)
+..+.++. .|-=-.+..+.+.+....+.++ +.+..+- .|-.-+++..+ +++.+.+ ++.|.++=+. .
T Consensus 108 ~a~~~Gvd--~i~if~~~sd~~ni~~~i~~ak-~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~G-ad~I~l~DT~G~ 183 (464)
T 2nx9_A 108 RAVKNGMD--VFRVFDAMNDVRNMQQALQAVK-KMGAHAQGTLCYTTSPVHNLQTWVDVAQQLAELG-VDSIALKDMAGI 183 (464)
T ss_dssp HHHHTTCC--EEEECCTTCCTHHHHHHHHHHH-HTTCEEEEEEECCCCTTCCHHHHHHHHHHHHHTT-CSEEEEEETTSC
T ss_pred HHHhCCcC--EEEEEEecCHHHHHHHHHHHHH-HCCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHCC-CCEEEEcCCCCC
Confidence 66666654 3332233345565655554443 3455542 23334455543 4455554 6777775443 3
Q ss_pred c-HHHHHHHHHHH-HHcCCcEEEcccCchhHHHHH
Q 014285 339 G-VLGTLQIIKAT-RKSGLHLMIDGMIETRLATGF 371 (427)
Q Consensus 339 G-i~~~~~~~~~A-~~~gi~~~~~s~~es~ig~~a 371 (427)
+ .....++++.. ++.++++-+|+-...|++.+.
T Consensus 184 ~~P~~v~~lv~~l~~~~~~~i~~H~Hnd~GlAvAN 218 (464)
T 2nx9_A 184 LTPYAAEELVSTLKKQVDVELHLHCHSTAGLADMT 218 (464)
T ss_dssp CCHHHHHHHHHHHHHHCCSCEEEEECCTTSCHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCeEEEEECCCCChHHHH
Confidence 3 55566666554 445899999987666666554
|
| >2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B* | Back alignment and structure |
|---|
Probab=81.83 E-value=14 Score=35.23 Aligned_cols=145 Identities=12% Similarity=0.084 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhhcCCcEEEEecc---C-----CchhhHHHHHHHHHhCCCcEEEE-eC-CCCCCHHHHHHHHHHhhhCC-
Q 014285 206 AEASELASKYCKLGFSTLKLNVG---R-----NITADFDVLQAIHAVHPHCSFIL-DA-NEGYTSEEAVEVLGKLNDMG- 274 (427)
Q Consensus 206 ~~~~~~~~~~~~~Gf~~iKlKiG---~-----~~~~d~~~l~~ir~~~~~~~L~v-DA-N~~~s~~~A~~~l~~L~~~~- 274 (427)
+...+.+++++++|-..|-+... + +.+++.+.++.+++.. ++.|.| |. |.-++++-+.+-++...+-.
T Consensus 74 ~~~~~~A~~~v~~GAdiIDIg~~StrP~~~~vs~eee~~vV~~v~~~~-~vplsI~DT~~~~~~~~V~eaal~aga~~k~ 152 (310)
T 2h9a_B 74 NDPVAWAKKCVEYGADIVALRLVSAHPDGQNRSGAELAEVCKAVADAI-DVPLMIIGCGVEEKDAEIFPVIGEALSGRNC 152 (310)
T ss_dssp TCHHHHHHHHHHTTCSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHHC-SSCEEEECCSCHHHHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHcCCcEEEEeCccCCCCCCCCCHHHHHHHHHHHHHhC-CceEEEECCCCCCCCHHHHHHHHHhCCCCCC
Confidence 45567788888999999988873 1 3466788899998864 789999 98 66688887777777766511
Q ss_pred CCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHH---HHcCCC--cEEEeCCCCc--c--HHHH--
Q 014285 275 VIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKV---MQENLA--SVVNIKLAKF--G--VLGT-- 343 (427)
Q Consensus 275 l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~l---l~~~a~--~~i~lk~~~~--G--i~~~-- 343 (427)
+ +..+ ..++++.+..+++ +.+.|+.+-=. .+.+.++++ +....+ +=|++||..- | +..+
T Consensus 153 i-INdv----s~~~~~~~~~~aa----~~g~~vv~m~~-~dv~~l~~~~~~a~~~Gi~~e~IilDPg~g~~g~~~e~~~~ 222 (310)
T 2h9a_B 153 L-LSSA----TKDNYKPIVATCM----VHGHSVVASAP-LDINLSKQLNIMIMEMNLAPNRIIMDPLIGALGYGIEYSYS 222 (310)
T ss_dssp E-EEEE----CTTTHHHHHHHHH----HHTCEEEEECS-SCHHHHHHHHHHHHTTTCCGGGEEEECCCCCTTTTHHHHHH
T ss_pred E-EEEC----CCCccHHHHHHHH----HhCCCEEEECh-hHHHHHHHHHHHHHHCCCChhhEEEeCCCccccCchHhHHH
Confidence 1 1122 2236788888876 67888876321 134444332 222223 4589999752 4 3244
Q ss_pred -HHHHHHH-----HHcCCcEEEcc
Q 014285 344 -LQIIKAT-----RKSGLHLMIDG 361 (427)
Q Consensus 344 -~~~~~~A-----~~~gi~~~~~s 361 (427)
++.++.+ +..|.|+.++-
T Consensus 223 ~l~~ir~~al~~~~~lg~P~l~g~ 246 (310)
T 2h9a_B 223 IIERMRLGALTGDKILAMPVVCFI 246 (310)
T ss_dssp HHHHHHHHHHTTCGGGCSCBEECH
T ss_pred HHHHHHHhhhhhhhcCCCCEEEEc
Confidence 4444442 33688887764
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=81.64 E-value=3.1 Score=37.96 Aligned_cols=153 Identities=14% Similarity=0.128 Sum_probs=86.1
Q ss_pred ceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHh-CCC-cEEEEeCC---C-------CCCH
Q 014285 193 SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAV-HPH-CSFILDAN---E-------GYTS 260 (427)
Q Consensus 193 ~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~-~~~-~~L~vDAN---~-------~~s~ 260 (427)
.+|+-...++.+++++ +++++.|... +-+|...-.+-+.++.+++. +++ +.+.+|++ + +|..
T Consensus 75 ~iPvi~~Ggi~~~~~~----~~~~~~Gad~--V~lg~~~l~~p~~~~~~~~~~~~~~i~~~~~~~~~~g~~~v~~~g~~~ 148 (252)
T 1ka9_F 75 FIPLTVGGGVRSLEDA----RKLLLSGADK--VSVNSAAVRRPELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRV 148 (252)
T ss_dssp CSCEEEESSCCSHHHH----HHHHHHTCSE--EEECHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTE
T ss_pred CCCEEEECCcCCHHHH----HHHHHcCCCE--EEEChHHHhCcHHHHHHHHHcCCCcEEEEEEEecCCCCEEEEECCCcc
Confidence 3555555566676543 4445667544 44554222334556666664 433 67888984 1 2321
Q ss_pred ---HHHHHHHHHhhhCCCCCceEeCCC------CCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEE
Q 014285 261 ---EEAVEVLGKLNDMGVIPVLFEQPV------HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVV 331 (427)
Q Consensus 261 ---~~A~~~l~~L~~~~l~~~~iEqP~------~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i 331 (427)
....+.++.+.+.+.. ..+=-.+ ..-+++.++++++ .+++||...=-+.+..+++++++.+ ++.+
T Consensus 149 ~~~~~~~e~~~~~~~~G~~-~i~~~~~~~~g~~~g~~~~~i~~l~~----~~~ipvia~GGI~~~~d~~~~~~~G-adgv 222 (252)
T 1ka9_F 149 PTGLHAVEWAVKGVELGAG-EILLTSMDRDGTKEGYDLRLTRMVAE----AVGVPVIASGGAGRMEHFLEAFQAG-AEAA 222 (252)
T ss_dssp EEEEEHHHHHHHHHHHTCC-EEEEEETTTTTTCSCCCHHHHHHHHH----HCSSCEEEESCCCSHHHHHHHHHTT-CSEE
T ss_pred ccCCcHHHHHHHHHHcCCC-EEEEecccCCCCcCCCCHHHHHHHHH----HcCCCEEEeCCCCCHHHHHHHHHCC-CHHH
Confidence 1223344444444433 1222122 1225788888875 5789998877788899999998754 6666
Q ss_pred EeCCCCcc-HHHHHHHHHHHHHcCCcE
Q 014285 332 NIKLAKFG-VLGTLQIIKATRKSGLHL 357 (427)
Q Consensus 332 ~lk~~~~G-i~~~~~~~~~A~~~gi~~ 357 (427)
.+=-..++ -....+..+.+++.|+++
T Consensus 223 ~vgsal~~~~~~~~~~~~~l~~~~~~~ 249 (252)
T 1ka9_F 223 LAASVFHFGEIPIPKLKRYLAEKGVHV 249 (252)
T ss_dssp EESHHHHTTSSCHHHHHHHHHHTTCCB
T ss_pred HHHHHHHcCCCCHHHHHHHHHHCCCCc
Confidence 65433332 112445556677888765
|
| >3eol_A Isocitrate lyase; seattle structural center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A* | Back alignment and structure |
|---|
Probab=80.80 E-value=24 Score=35.26 Aligned_cols=116 Identities=11% Similarity=0.005 Sum_probs=78.0
Q ss_pred ceeeeeee--cCCCHHHHHHHHHHHhhcCCcEEEEec--c-------------CCchhhHHHHHHHHHh----CCCcE--
Q 014285 193 SLSTAITI--PAVSPAEASELASKYCKLGFSTLKLNV--G-------------RNITADFDVLQAIHAV----HPHCS-- 249 (427)
Q Consensus 193 ~ip~~~~i--~~~~~~~~~~~~~~~~~~Gf~~iKlKi--G-------------~~~~~d~~~l~~ir~~----~~~~~-- 249 (427)
.+|+.+-+ +.+++..+.+.++.+.+.|--.+-|-= + .+.++-+++|++.|+. +++.-
T Consensus 145 ~lPIiaD~DtGfG~~~nv~rtVk~~~~AGaAGi~IEDQ~~~~KkCGH~~gk~lvp~ee~v~rI~AAr~A~~~~g~d~vIi 224 (433)
T 3eol_A 145 FAPIVADAEAGFGDPLDAFEIMKAYIEAGAAGVHFEDQLASEKKCGHLGGKVLIPTAAHIRNLNAARLAADVMGTPTLIV 224 (433)
T ss_dssp CCCEEEECC---CCHHHHHHHHHHHHHHTCSEEEEESBCC---------CCEECCHHHHHHHHHHHHHHHHHHTCCCEEE
T ss_pred CCCeEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCCCcCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 46654433 334666677778888899988877642 1 1456778899888863 56644
Q ss_pred EEEeCCCC------------------------------CCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhh
Q 014285 250 FILDANEG------------------------------YTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFA 299 (427)
Q Consensus 250 L~vDAN~~------------------------------~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~ 299 (427)
-|-|+..+ ...++|++.+++..+ +-...|+|-+.+ +.++++++++.+
T Consensus 225 ARTDA~~a~l~~s~~d~rd~~fl~g~g~r~~eG~y~~~~gld~AI~Ra~AY~~-GAD~If~e~~~~--~~eei~~f~~~v 301 (433)
T 3eol_A 225 ARTDAEAAKLLTSDIDERDQPFVDYEAGRTAEGFYQVKNGIEPCIARAIAYAP-YCDLIWMETSKP--DLAQARRFAEAV 301 (433)
T ss_dssp EEECTTTCCEESCCCSTTTGGGBCSSSCBCTTCCEEBCCSHHHHHHHHHHHGG-GCSEEEECCSSC--CHHHHHHHHHHH
T ss_pred EEcCCccccccccCcccccccceeccCcccccccccccCCHHHHHHHHHHHHh-cCCEEEEeCCCC--CHHHHHHHHHHh
Confidence 48998652 458999999999888 555569998765 678888888755
Q ss_pred ccccCCe-EEecC
Q 014285 300 RDTYGIS-VVADE 311 (427)
Q Consensus 300 r~~~~iP-Ia~dE 311 (427)
+...+.+ ++.+-
T Consensus 302 ~~~~P~~~L~~~~ 314 (433)
T 3eol_A 302 HKAHPGKLLAYNC 314 (433)
T ss_dssp HHHSTTCCEEEEC
T ss_pred cccCCCcccccCC
Confidence 4334443 34443
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=80.64 E-value=8.7 Score=34.76 Aligned_cols=132 Identities=16% Similarity=0.168 Sum_probs=76.3
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHH-hCCCcEEEEeCC------CCCCH--HHHH
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHA-VHPHCSFILDAN------EGYTS--EEAV 264 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~-~~~~~~L~vDAN------~~~s~--~~A~ 264 (427)
+|+-...++.++++ ++.+++.|-..+ -+|...-.+.+.+..+++ .+..+.+.+|+. .+|.. .+..
T Consensus 76 ipv~v~ggI~~~~~----~~~~l~~Gad~V--~lg~~~l~~p~~~~~~~~~~g~~~~~~l~~~~g~v~~~g~~~~~~~~~ 149 (244)
T 1vzw_A 76 IKVELSGGIRDDDT----LAAALATGCTRV--NLGTAALETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDLY 149 (244)
T ss_dssp SEEEEESSCCSHHH----HHHHHHTTCSEE--EECHHHHHCHHHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCCBHH
T ss_pred CcEEEECCcCCHHH----HHHHHHcCCCEE--EECchHhhCHHHHHHHHHHcCCcEEEEEEccCCEEEEcCcccCCCCHH
Confidence 45444555667765 445566786654 445322234455655554 455677888875 23410 0233
Q ss_pred HHHHHhhhCCCCCceEe---C--CCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcC--CCcEEEeCC
Q 014285 265 EVLGKLNDMGVIPVLFE---Q--PVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQEN--LASVVNIKL 335 (427)
Q Consensus 265 ~~l~~L~~~~l~~~~iE---q--P~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~--a~~~i~lk~ 335 (427)
+.++.+.+.++....+- . ....-+++.++++++ ..++||..+=-+.+..++.++++.. .++.+.+=-
T Consensus 150 e~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~i~~----~~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~ 223 (244)
T 1vzw_A 150 ETLDRLNKEGCARYVVTDIAKDGTLQGPNLELLKNVCA----ATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGK 223 (244)
T ss_dssp HHHHHHHHTTCCCEEEEEC-------CCCHHHHHHHHH----TCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECH
T ss_pred HHHHHHHhCCCCEEEEeccCcccccCCCCHHHHHHHHH----hcCCCEEEECCCCCHHHHHHHHhhccCCCceeeeeH
Confidence 44455555554322221 1 111236788888875 5789999988888899999999873 467666543
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=80.32 E-value=5 Score=36.32 Aligned_cols=131 Identities=14% Similarity=0.169 Sum_probs=76.5
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHH-hCCCcEEEEeCC----------CCCCH--
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHA-VHPHCSFILDAN----------EGYTS-- 260 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~-~~~~~~L~vDAN----------~~~s~-- 260 (427)
+|+-...++.++++ ++.+++.|-..+ -+|...-.+.+.+..+++ .+..+.+.+|+. .+|..
T Consensus 75 ipv~v~ggi~~~~~----~~~~l~~Gad~V--~lg~~~l~~p~~~~~~~~~~g~~~~~~ld~~~~~~~~~v~~~g~~~~~ 148 (244)
T 2y88_A 75 VQVELSGGIRDDES----LAAALATGCARV--NVGTAALENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDG 148 (244)
T ss_dssp SEEEEESSCCSHHH----HHHHHHTTCSEE--EECHHHHHCHHHHHHHHHHHGGGEEEEEEEEEETTEEEEEEGGGTEEE
T ss_pred CcEEEECCCCCHHH----HHHHHHcCCCEE--EECchHhhChHHHHHHHHHcCCCEEEEEeccccCCCCEEEECCccCCC
Confidence 45444555667765 445566786654 444322334455665555 455677788875 13410
Q ss_pred HHHHHHHHHhhhCCCCCceE---eC--CCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcC--CCcEEEe
Q 014285 261 EEAVEVLGKLNDMGVIPVLF---EQ--PVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQEN--LASVVNI 333 (427)
Q Consensus 261 ~~A~~~l~~L~~~~l~~~~i---Eq--P~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~--a~~~i~l 333 (427)
.+..+.++.+.++++....+ .. -...-+++.++++++ ..++||..+=-+.+..++.++++.. .++.+.+
T Consensus 149 ~~~~e~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~l~~----~~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~v 224 (244)
T 2y88_A 149 GDLWDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVAD----RTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIV 224 (244)
T ss_dssp EEHHHHHHHHHHTTCCCEEEEETTTTTTTSCCCHHHHHHHHT----TCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEE
T ss_pred CCHHHHHHHHHhCCCCEEEEEecCCccccCCCCHHHHHHHHH----hCCCCEEEECCCCCHHHHHHHHhhccCCCCEEEE
Confidence 02344555555555432222 11 111236778888874 5789999988888899999998762 4676665
Q ss_pred C
Q 014285 334 K 334 (427)
Q Consensus 334 k 334 (427)
=
T Consensus 225 G 225 (244)
T 2y88_A 225 G 225 (244)
T ss_dssp C
T ss_pred c
Confidence 3
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 427 | ||||
| d1jpdx1 | 208 | c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Esch | 4e-24 | |
| d1jdfa1 | 309 | c.1.11.2 (A:138-446) D-glucarate dehydratase {Esch | 2e-21 | |
| d1kcza1 | 253 | c.1.11.2 (A:161-413) beta-Methylaspartase {Clostri | 4e-21 | |
| d1jpma1 | 234 | c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Baci | 2e-20 | |
| d1r6wa1 | 221 | c.1.11.2 (A:100-320) O-succinylbenzoate synthase { | 1e-19 | |
| d1kkoa1 | 251 | c.1.11.2 (A:161-411) beta-Methylaspartase {Citroba | 4e-19 | |
| d2chra1 | 244 | c.1.11.2 (A:127-370) Chlormuconate cycloisomerase | 4e-13 | |
| d1wufa1 | 244 | c.1.11.2 (A:1127-1370) N-acylamino acid racemase { | 1e-12 | |
| d1jpma2 | 125 | d.54.1.1 (A:1-125) L-Ala-D/L-Glu epimerase {Bacill | 3e-12 | |
| d1yeya1 | 252 | c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas | 3e-12 | |
| d1muca2 | 127 | d.54.1.1 (A:4-130) Muconate-lactonizing enzyme (ci | 2e-11 | |
| d1wufa2 | 126 | d.54.1.1 (A:1001-1126) N-acylamino acid racemase { | 1e-10 | |
| d1muca1 | 242 | c.1.11.2 (A:131-372) Muconate-lactonizing enzyme { | 3e-10 | |
| d2chra2 | 126 | d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {A | 3e-10 | |
| d1wuea1 | 241 | c.1.11.2 (A:1127-1367) N-acylamino acid racemase { | 4e-10 | |
| d2gl5a2 | 122 | d.54.1.1 (A:1-122) Putative dehydratase protein ST | 5e-10 | |
| d1wuea2 | 126 | d.54.1.1 (A:1001-1126) N-acylamino acid racemase { | 5e-10 | |
| d1nu5a1 | 243 | c.1.11.2 (A:127-369) Chlormuconate cycloisomerase | 1e-09 | |
| d1r0ma1 | 243 | c.1.11.2 (A:133-375) N-acylamino acid racemase {De | 1e-09 | |
| d1r0ma2 | 127 | d.54.1.1 (A:6-132) N-acylamino acid racemase {Dein | 3e-09 | |
| d1tzza2 | 140 | d.54.1.1 (A:1006-1145) Hypothetical protein Bll673 | 6e-09 | |
| d2mnra2 | 130 | d.54.1.1 (A:3-132) Mandelate racemase {Pseudomonas | 7e-09 | |
| d1nu5a2 | 126 | d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {P | 1e-08 | |
| d1sjda2 | 125 | d.54.1.1 (A:1-125) N-acylamino acid racemase {Amyc | 2e-08 | |
| d1jpdx2 | 116 | d.54.1.1 (X:-2-113) L-Ala-D/L-Glu epimerase {Esche | 1e-07 | |
| d2gdqa2 | 115 | d.54.1.1 (A:4-118) Hypothetical protein YitF {Baci | 2e-07 | |
| d1tzza1 | 247 | c.1.11.2 (A:1146-1392) Hypothetical protein Bll673 | 4e-07 | |
| d1bqga2 | 132 | d.54.1.1 (A:12-143) D-glucarate dehydratase {Pseud | 7e-07 | |
| d1r6wa2 | 101 | d.54.1.1 (A:-2-99) O-succinylbenzoate synthase {Es | 8e-07 | |
| d1yeya2 | 139 | d.54.1.1 (A:2-140) RTS beta protein {Xanthomonas c | 9e-07 | |
| d1sjda1 | 242 | c.1.11.2 (A:126-367) N-acylamino acid racemase {Am | 1e-06 | |
| d2gdqa1 | 256 | c.1.11.2 (A:119-374) Hypothetical protein YitF {Ba | 6e-06 | |
| d1rvka2 | 126 | d.54.1.1 (A:1-126) Hypothetical protein Atu3453 {A | 7e-06 | |
| d1jdfa2 | 133 | d.54.1.1 (A:5-137) D-glucarate dehydratase {Escher | 3e-05 | |
| d1rvka1 | 255 | c.1.11.2 (A:127-381) Hypothetical protein Atu3453 | 9e-05 | |
| d2mnra1 | 227 | c.1.11.2 (A:133-359) Mandelate racemase {Pseudomon | 4e-04 |
| >d1jpdx1 c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Escherichia coli [TaxId: 562]
Score = 97.2 bits (241), Expect = 4e-24
Identities = 52/209 (24%), Positives = 94/209 (44%), Gaps = 16/209 (7%)
Query: 193 SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFIL 252
++ TA T+ +P + + AS + G LK+ + ++ + + + AI P + I+
Sbjct: 5 TVITAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDNHLIS--ERMVAIRTAVPDATLIV 62
Query: 253 DANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADES 312
DANE + +E L D+ + EQP+ D + L + + + + ADES
Sbjct: 63 DANESWRAEGLAARCQLLADL--GVAMLEQPLPAQDDAALENF------IHPLPICADES 114
Query: 313 CRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGMIETRLATGF 371
C + ++++ + +VNIKL K G+ L + R G LM+ M+ T A
Sbjct: 115 CHTRSNLKALKGR--YEMVNIKLDKTGGLTEALALATEARAQGFSLMLGCMLCTSRAISA 172
Query: 372 ALHLAAGLGCIKYVNLNTPFLLSEDPFVG 400
AL L + + +L+ P L+ D
Sbjct: 173 ALPLVPQ---VSFADLDGPTWLAVDVEPA 198
|
| >d1jdfa1 c.1.11.2 (A:138-446) D-glucarate dehydratase {Escherichia coli [TaxId: 562]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: D-glucarate dehydratase species: Escherichia coli [TaxId: 562]
Score = 92.2 bits (228), Expect = 2e-21
Identities = 31/204 (15%), Positives = 65/204 (31%), Gaps = 6/204 (2%)
Query: 201 PAVSPAEASELASKYC-KLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGY 258
A++P LA K GF+ KL G + + + A+ P LD N +
Sbjct: 44 EAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAW 103
Query: 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLND 318
+ EA+++ L E P + +V R G+ +
Sbjct: 104 SLNEAIKIGKYLKGS---LAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQ 160
Query: 319 VQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAG 378
+ + + + + G++++ + + GL ++ H+AA
Sbjct: 161 MGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSDNHFDISLAMFTHVAAA 220
Query: 379 L-GCIKYVNLNTPFLLSEDPFVGG 401
G I ++ + +
Sbjct: 221 APGKITAIDTHWIWQEGNQRLTKE 244
|
| >d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Clostridium tetanomorphum [TaxId: 1553]
Score = 89.7 bits (222), Expect = 4e-21
Identities = 27/185 (14%), Positives = 55/185 (29%), Gaps = 22/185 (11%)
Query: 219 GFSTLKLNVGRNITADFDVLQAIHA--------------VHPHCSFILDANEGYTSEEAV 264
+ ++ +G + ++ + H + A +
Sbjct: 36 LINNVEEKLGLKGEKLLEYVKWLRDRIIKLRVREDYAPIFHIDVYGTIGAAFDVDIKAMA 95
Query: 265 EVLGKLNDMGV-IPVLFEQPVHRDDWSG---LHDVSNFARDTYGIS--VVADESCRSLND 318
+ + L + + E P+ +D D G+ +VADE C ++ D
Sbjct: 96 DYIQTLAEAAKPFHLRIEGPMDVEDRQKQMEAMRDLRAELDGRGVDAELVADEWCNTVED 155
Query: 319 VQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDG-MIETRLATGFALHLA 376
V+ +V IK G V I + +G+ G ET + ++
Sbjct: 156 VKFFTDNKAGHMVQIKTPDLGGVNNIADAIMYCKANGMGAYCGGTCNETNRSAEVTTNIG 215
Query: 377 AGLGC 381
G
Sbjct: 216 MACGA 220
|
| >d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Score = 87.8 bits (216), Expect = 2e-20
Identities = 80/230 (34%), Positives = 115/230 (50%), Gaps = 7/230 (3%)
Query: 192 NSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIH-AVHPHCS 249
++L T T+ SP E + A Y K GF TLK+ VG+ +I D +Q I V
Sbjct: 3 DTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIRKRVGSAVK 62
Query: 250 FILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA 309
LDAN+G+ +EAV + K+ D G+ L EQPVH+DD +GL V++ ++A
Sbjct: 63 LRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKVTDA----TDTPIMA 118
Query: 310 DESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLA 368
DES + +V+Q A ++NIKL K G + G +I G+ M+ MIET+L
Sbjct: 119 DESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVGSMIETKLG 178
Query: 369 TGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQG 418
A H AA I + + P +L D F GG SG+ + G G
Sbjct: 179 ITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLG 228
|
| >d1r6wa1 c.1.11.2 (A:100-320) O-succinylbenzoate synthase {Escherichia coli [TaxId: 562]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: O-succinylbenzoate synthase species: Escherichia coli [TaxId: 562]
Score = 84.8 bits (209), Expect = 1e-19
Identities = 32/204 (15%), Positives = 54/204 (26%), Gaps = 11/204 (5%)
Query: 196 TAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDA 254
A + P + + G K+ VG D V+ + P LDA
Sbjct: 6 RAAPLCNGDPDDLILKLADM--PGEKVAKVRVGLYEAVRDGMVVNLLLEAIPDLHLRLDA 63
Query: 255 NEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCR 314
N +T + + +N + +
Sbjct: 64 NRAWTPLKGQQFAKYVNPDYRDRI--AFLEEPCKTRDDSR-----AFARETGIAIAWDES 116
Query: 315 SLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGMIETRLATGFAL 373
+ E V IK + + ++A GL +I IE+ L
Sbjct: 117 LREPDFAFVAEEGVRAVVIKPTLTGSLEKVREQVQAAHALGLTAVISSSIESSLGLTQLA 176
Query: 374 HLAAGLGCIKYVNLNTPFLLSEDP 397
+AA L L+T L+
Sbjct: 177 RIAAWLTPDTIPGLDTLDLMQAQQ 200
|
| >d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Citrobacter amalonaticus [TaxId: 35703]
Score = 83.8 bits (207), Expect = 4e-19
Identities = 32/185 (17%), Positives = 56/185 (30%), Gaps = 22/185 (11%)
Query: 219 GFSTLKLNVGR---NITADFDVL-QAIHAV------HPHCSFI----LDANEGYTSEEAV 264
+ ++ +G + L I ++ HP +
Sbjct: 36 LINNVEEKLGFKGEKLREYVRWLSDRILSLRSSPRYHPTLHIDVYGTIGLIFDMDPVRCA 95
Query: 265 EVLGKLNDM-GVIPVLFEQPV----HRDDWSGL-HDVSNFARDTYGISVVADESCRSLND 318
E + L +P+ E PV D L R G+ +VADE C + D
Sbjct: 96 EYIASLEKEAQGLPLYIEGPVDAGNKPDQIRMLTAITKELTRLGSGVKIVADEWCNTYQD 155
Query: 319 VQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDG-MIETRLATGFALHLA 376
+ +V IK G + + + K G+ G ET ++ +H+A
Sbjct: 156 IVDFTDAGSCHMVQIKTPDLGGIHNIVDAVLYCNKHGMEAYQGGTCNETEISARTCVHVA 215
Query: 377 AGLGC 381
Sbjct: 216 LAARP 220
|
| >d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Score = 66.6 bits (161), Expect = 4e-13
Identities = 43/232 (18%), Positives = 92/232 (39%), Gaps = 11/232 (4%)
Query: 192 NSLSTAITIPAVSPAE-ASELASKYCKLGFSTLKLNVG-RNITADFDVLQAIH-AVHPHC 248
+++ A T+ + + + K+ +G R+ D ++A+ ++
Sbjct: 4 SAIPIAWTLASGDTKRDLDSAVEMIERRRHNRFKVKLGFRSPQDDLIHMEALSNSLGSKA 63
Query: 249 SFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVV 308
+D N+ + + A + L EQPV R++ L +S+ ++++
Sbjct: 64 YLRVDVNQAWDEQVASVY--IPELEALGVELIEQPVGRENTQALRRLSDN----NRVAIM 117
Query: 309 ADESCRSLNDVQKVMQENLASVVNIKLAKFGVL-GTLQIIKATRKSGLHLMIDGMIETRL 367
ADES +L + ++ V ++KL G + T +I SG+ M+++ +
Sbjct: 118 ADESLSTLASAFDLARDRSVDVFSLKLCNMGGVSATQKIAAVAEASGIASYGGTMLDSTI 177
Query: 368 ATGFALHLAAGLGCIKY-VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQG 418
T AL L + + + + L PF+L++ E+ G G
Sbjct: 178 GTSVALQLYSTVPSLPFGCELIGPFVLADTLSHEPLEIRDYELQVPTGVGHG 229
|
| >d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Score = 65.0 bits (157), Expect = 1e-12
Identities = 45/230 (19%), Positives = 91/230 (39%), Gaps = 12/230 (5%)
Query: 192 NSLSTAITIPAV-SPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSF 250
S+ ++I + +L ++Y G+ +KL + N D ++A+ P S
Sbjct: 3 ESIKVGVSIGLQQNVETLLQLVNQYVDQGYERVKLKIAPN--KDIQFVEAVRKSFPKLSL 60
Query: 251 ILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVAD 310
+ DAN Y E+ + + + EQP D+ + + + D
Sbjct: 61 MADANSAYNREDFLLLKELDQYDLEM---IEQPFGTKDFVDHAWLQKQLKTRICL----D 113
Query: 311 ESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGMIETRLAT 369
E+ RS+ DV++ +N+KLA+ G+ L+I + + + + GM+E +
Sbjct: 114 ENIRSVKDVEQAHSIGSCRAINLKLARVGGMSSALKIAEYCALNEILVWCGGMLEAGVGR 173
Query: 370 GFALHLAAGLGCIKYVNLN-TPFLLSEDPFVGGCEVSGAIYNFTNARGQG 418
+ LAA + +++ + +ED E++ G G
Sbjct: 174 AHNIALAARNEFVFPGDISASNRFFAEDIVTPAFELNQGRLKVPTNEGIG 223
|
| >d1jpma2 d.54.1.1 (A:1-125) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} Length = 125 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Score = 61.5 bits (148), Expect = 3e-12
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 4/125 (3%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL 126
+ R E + V L+ P L +V E+V +R+ +G VGWGE ++TGD ++
Sbjct: 3 IIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSI 62
Query: 127 VKVREA--CQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLW 184
L L +I +L G+ A +A VEMAL D A +PL+
Sbjct: 63 ESAIHHVLKPALLGKSLAGYEAILHDIQHLLTGNMSA--KAAVEMALYDGWAQMCGLPLY 120
Query: 185 RLFGG 189
++ GG
Sbjct: 121 QMLGG 125
|
| >d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Score = 64.2 bits (155), Expect = 3e-12
Identities = 37/176 (21%), Positives = 69/176 (39%), Gaps = 7/176 (3%)
Query: 204 SPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAI-HAVHPHCSFILDANEGYTSEE 262
S + LA + GF T+KL VG N+ D + A+ P + +DAN+ +
Sbjct: 15 SDEKLVRLAKEAVADGFRTIKLKVGANVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGP 74
Query: 263 AVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKV 322
A++ + +L + + E+P DD G + + V E ++ +++
Sbjct: 75 AIDWMRQLAEFDIAW--IEEPTSPDDVLGHAAIRQ---GITPVPVSTGEHTQNRVVFKQL 129
Query: 323 MQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377
+Q ++ I A+ G V L I+ K G+ + L +A
Sbjct: 130 LQAGAVDLIQIDAARVGGVNENLAILLLAAKFGVRVFPHAGGVGLCELVQHLAMAD 185
|
| >d1muca2 d.54.1.1 (A:4-130) Muconate-lactonizing enzyme (cis muconate cycloisomerase) {Pseudomonas putida [TaxId: 303]} Length = 127 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Muconate-lactonizing enzyme (cis muconate cycloisomerase) species: Pseudomonas putida [TaxId: 303]
Score = 59.2 bits (142), Expect = 2e-11
Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 6/127 (4%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL 126
++R + +++ P L + +++ V +RV S+G G GE + +
Sbjct: 3 IERIDAIIVDLPTIRPHKLAMHTMQQQTLVVLRVRCSDGVEGIGEATTIGGLAYGYESPE 62
Query: 127 VKVREACQ----FLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIP 182
L +N A+ ++ ++ G+ FA ++G+E AL+DA + +P
Sbjct: 63 GIKANIDAHLAPALIGLAADNINAAMLKLDKLAKGNTFA--KSGIESALLDAQGKRLGLP 120
Query: 183 LWRLFGG 189
+ L GG
Sbjct: 121 VSELLGG 127
|
| >d1wufa2 d.54.1.1 (A:1001-1126) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} Length = 126 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Score = 57.1 bits (137), Expect = 1e-10
Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 7/126 (5%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVT----GDQ 122
Q+A + L AP +++ + I + G G+GE+ PL
Sbjct: 3 FQKARLIHAELPLLAPFKTSYGELKSKDFYIIELINEEGIHGYGELEAFPLPDYTEETLS 62
Query: 123 TKALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIP 182
+ L+ + L Q + E+ + G+E A +A VE+A+ DA A
Sbjct: 63 SAILIIKEQLLPLLAQRKIRKPE-EIQELFSWIQGNEMA--KAAVELAVWDAFAKMEKRS 119
Query: 183 LWRLFG 188
L ++ G
Sbjct: 120 LAKMIG 125
|
| >d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Muconate-lactonizing enzyme species: Pseudomonas putida [TaxId: 303]
Score = 58.1 bits (139), Expect = 3e-10
Identities = 48/240 (20%), Positives = 86/240 (35%), Gaps = 11/240 (4%)
Query: 192 NSLSTAITIPAVSPAE-ASELASKYCKLGFSTLKLNVGRN-ITADFDVLQAIH-AVHPHC 248
+SL A T+ + A +E KL +G N + D + I +
Sbjct: 4 DSLEVAWTLASGDTARDIAEARHMLEIRRHRVFKLKIGANPVEQDLKHVVTIKRELGDSA 63
Query: 249 SFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVV 308
S +D N+ + +A+ L EQP+ R + G + ++
Sbjct: 64 SVRVDVNQYWDESQAIRA--CQVLGDNGIDLIEQPISRINRGGQVRL----NQRTPAPIM 117
Query: 309 ADESCRSLNDVQKVMQENLASVVNIKL-AKFGVLGTLQIIKATRKSGLHLMIDGMIETRL 367
ADES S+ D + + AS+ +K+ G L+ + +G+ L M+E +
Sbjct: 118 ADESIESVEDAFSLAADGAASIFALKIAKNGGPRAVLRTAQIAEAAGIGLYGGTMLEGSI 177
Query: 368 ATGFALHLAAGLGCIKY-VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426
T + H L + + L P LL+E+ + + G G L +
Sbjct: 178 GTLASAHAFLTLRQLTWGTELFGPLLLTEEIVNEPPQYRDFQLHIPRTPGLGLTLDEQRL 237
|
| >d2chra2 d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} Length = 126 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Score = 55.7 bits (133), Expect = 3e-10
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 3/125 (2%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL 126
+ E ++V P+ + +++V V +RV S G VG GE V A
Sbjct: 3 IDAIEAVIVDVPTKRPIQMSITTVHQQSYVIVRVY-SEGLVGVGEGGSVGGPVWSAECAE 61
Query: 127 VKVREACQFLRQSPPTTLNFALDEIARILPGS--EFASVRAGVEMALIDAVANSIDIPLW 184
++L T F + + + + AS +A VEMAL+D A ++ + +
Sbjct: 62 TIKIIVERYLAPHLLGTDAFNVSGALQTMARAVTGNASAKAAVEMALLDLKARALGVSIA 121
Query: 185 RLFGG 189
L GG
Sbjct: 122 ELLGG 126
|
| >d1wuea1 c.1.11.2 (A:1127-1367) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Score = 57.3 bits (137), Expect = 4e-10
Identities = 42/234 (17%), Positives = 85/234 (36%), Gaps = 12/234 (5%)
Query: 196 TAITIP-AVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDA 254
I++ + + + G+ +KL + D + + I P+ ++DA
Sbjct: 7 VGISLGIQEDLPQLLKQVQLAVEKGYQRVKLKIRPGY--DVEPVALIRQHFPNLPLMVDA 64
Query: 255 NEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCR 314
N YT + ++ + + EQP DD+ + + + DE+ R
Sbjct: 65 NSAYTLADLPQLQRLDHYQLAM---IEQPFAADDFLDHAQLQRELKTRICL----DENIR 117
Query: 315 SLNDVQKVMQENLASVVNIKLAK-FGVLGTLQIIKATRKSGLHLMIDGMIETRLATGFAL 373
SL D Q + +N+K+ + G+ L+I +++ L + + GM E+ + L
Sbjct: 118 SLKDCQVALALGSCRSINLKIPRVGGIHEALKIAAFCQENDLLVWLGGMFESGVGRALNL 177
Query: 374 HLAAGLGCIKYVNLN-TPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426
A+ +++ T ED + G G L T +
Sbjct: 178 QFASQPTFSFPGDISATERYFYEDIITEPFILEQGTMTVPQGLGIGVTLSQTNL 231
|
| >d2gl5a2 d.54.1.1 (A:1-122) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Putative dehydratase protein STM2273 species: Salmonella typhimurium [TaxId: 90371]
Score = 54.9 bits (131), Expect = 5e-10
Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 5/114 (4%)
Query: 79 LSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQ 138
++ + V IRV +G G GEV + +++
Sbjct: 11 CELKKRDQ--TMSSYNPVLIRVNTDSGLSGIGEVGLAYGAGAKAGVGIIRDLAPLIVGED 68
Query: 139 SPPTTLNFALDEIA---RILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189
+ + G+ F + + +++AL D + +P+++L GG
Sbjct: 69 PLNIEKIWEFFFRKTFWGMGGGNVFYAGMSAIDIALWDIKGKYLGVPVYQLLGG 122
|
| >d1wuea2 d.54.1.1 (A:1001-1126) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} Length = 126 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Score = 55.0 bits (131), Expect = 5e-10
Identities = 23/123 (18%), Positives = 39/123 (31%), Gaps = 1/123 (0%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL 126
+Q E ++ + L P +E + G G+GE+ Q +
Sbjct: 3 IQSIETYQVRLPLKTPFVTSYGRLEEKAFDLFVITDEQGNQGFGELVAFEQPDYVQETLV 62
Query: 127 VKVREACQFLRQSPPTTLNFALDEIARILPGSEFA-SVRAGVEMALIDAVANSIDIPLWR 185
+ Q L T E++ I + +A +E A+ D A L
Sbjct: 63 TERFIIQQHLIPLLLTEAIEQPQEVSTIFEEVKGHWMGKAALETAIWDLYAKRQQKSLTE 122
Query: 186 LFG 188
FG
Sbjct: 123 FFG 125
|
| >d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Score = 56.6 bits (135), Expect = 1e-09
Identities = 48/232 (20%), Positives = 94/232 (40%), Gaps = 11/232 (4%)
Query: 192 NSLSTAITIPAVSPAE-ASELASKYCKLGFSTLKLNVG-RNITADFDVLQAIH-AVHPHC 248
S+ A T+ + A + K+ +G R D + +++I AV
Sbjct: 4 TSIPIAWTLASGDTARDIDSALEMIETRRHNRFKVKLGARTPAQDLEHIRSIVKAVGDRA 63
Query: 249 SFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVV 308
S +D N+G+ + A + +L + GV V P + G++++
Sbjct: 64 SVRVDVNQGWDEQTASIWIPRLEEAGVELVEQPVPRANFGA------LRRLTEQNGVAIL 117
Query: 309 ADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRL 367
ADES SL+ ++ +++ ++KL G + TL++ +G+ M+++ +
Sbjct: 118 ADESLSSLSSAFELARDHAVDAFSLKLCNMGGIANTLKVAAVAEAAGISSYGGTMLDSTV 177
Query: 368 ATGFALHLAAGLGCIKY-VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQG 418
T ALH+ A L + Y L P++L + E+ + G G
Sbjct: 178 GTAAALHVYATLPSLPYGCELIGPWVLGDRLTQQDLEIKDFEVHLPLGSGLG 229
|
| >d1r0ma1 c.1.11.2 (A:133-375) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Score = 55.8 bits (133), Expect = 1e-09
Identities = 41/230 (17%), Positives = 88/230 (38%), Gaps = 12/230 (5%)
Query: 192 NSLSTAITIPAVSPAEAS-ELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSF 250
+ +++ + +A+ +L ++ + G+ +KL + D ++A P
Sbjct: 3 EQVEVGVSLGIQADEQATVDLVRRHVEQGYRRIKLKIKPGW--DVQPVRATREAFPDIRL 60
Query: 251 ILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVAD 310
+DAN YT + L +L++ + EQP+ DD +++ + D
Sbjct: 61 TVDANSAYTLAD-AGRLRQLDEYDLTY--IEQPLAWDDLVDHAELARR----IRTPLCLD 113
Query: 311 ESCRSLNDVQKVMQENLASVVNIKLAKFGVL-GTLQIIKATRKSGLHLMIDGMIETRLAT 369
ES S +D +K + V+N+K+A+ G + ++ + G + GM+E+ +
Sbjct: 114 ESVASASDARKALALGAGGVINLKVARVGGHAESRRVHDVAQSFGAPVWCGGMLESGIGR 173
Query: 370 GFALHLAAGLGCIKYVNL-NTPFLLSEDPFVGGCEVSGAIYNFTNARGQG 418
+HL+ + + D E + G G
Sbjct: 174 AHNIHLSTLSNFRLPGDTSSASRYWERDLIQEPLEAVDGLMPVPQGPGTG 223
|
| >d1r0ma2 d.54.1.1 (A:6-132) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} Length = 127 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Score = 53.0 bits (126), Expect = 3e-09
Identities = 21/123 (17%), Positives = 34/123 (27%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL 126
++ AE + L + + + + ++T A
Sbjct: 5 IEAAEIVVARLPLKFRFETSFGVQTHKVVPLLILHGEGVQGVAEGTMEARPMYREETIAG 64
Query: 127 VKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRL 186
FL T + RA VEMA D A ++ +PL L
Sbjct: 65 ALDLLRGTFLPAILGQTFANPEAVSDALGSYRGNRMARAMVEMAAWDLWARTLGVPLGTL 124
Query: 187 FGG 189
GG
Sbjct: 125 LGG 127
|
| >d1tzza2 d.54.1.1 (A:1006-1145) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Score = 52.2 bits (124), Expect = 6e-09
Identities = 28/130 (21%), Positives = 43/130 (33%), Gaps = 13/130 (10%)
Query: 73 RELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTG-DQTKALVKVRE 131
RE+ +S+P+ + + V G V G L++ R
Sbjct: 7 REITKPISSPIRNAYIDFTKMTTSLVAVVTDVVREGKRVVGYGFNSNGRYGQGGLIRERF 66
Query: 132 ACQFLRQSPPTTLNFALDEIARIL------------PGSEFASVRAGVEMALIDAVANSI 179
A + L P LN A D + E + ++MA+ DAVA
Sbjct: 67 ASRILEADPKKLLNEAGDNLDPDKVWAAMMINEKPGGHGERSVAVGTIDMAVWDAVAKIA 126
Query: 180 DIPLWRLFGG 189
PL+RL
Sbjct: 127 GKPLFRLLAE 136
|
| >d2mnra2 d.54.1.1 (A:3-132) Mandelate racemase {Pseudomonas putida [TaxId: 303]} Length = 130 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Score = 51.8 bits (123), Expect = 7e-09
Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 5/128 (3%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL 126
+ R +NV L+ P+ + +V V I + S G VG + V K L
Sbjct: 4 ITGLRTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFAYTPVALKSLKQL 63
Query: 127 VKVREACQFLRQSPPTTLNF---ALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPL 183
+ + + P ++ AG++MA DA+ + PL
Sbjct: 64 L--DDMAAMIVNEPLAPVSLEAMLAKRFCLAGYTGLIRMAAAGIDMAAWDALGKVHETPL 121
Query: 184 WRLFGGAS 191
+L G +
Sbjct: 122 VKLLGANA 129
|
| >d1nu5a2 d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} Length = 126 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Score = 51.0 bits (121), Expect = 1e-08
Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 3/125 (2%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL 126
++ ++V PL + ++V V ++V+ + G VG GE V T A
Sbjct: 3 IEAISTTIVDVPTRRPLQMSFTTVHKQSYVIVQVK-AGGLVGIGEGGSVGGPTWGSESAE 61
Query: 127 VKVREACQFLRQSPPTTLNFALDEIARILPGS--EFASVRAGVEMALIDAVANSIDIPLW 184
+L L + ++ + S +A +++AL D A ++++ +
Sbjct: 62 TIKVIIDNYLAPLLVGKDASNLSQARVLMDRAVTGNLSAKAAIDIALHDLKARALNLSIA 121
Query: 185 RLFGG 189
L GG
Sbjct: 122 DLIGG 126
|
| >d1sjda2 d.54.1.1 (A:1-125) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} Length = 125 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Score = 50.7 bits (120), Expect = 2e-08
Identities = 16/122 (13%), Positives = 34/122 (27%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL 126
+ E R + + L AP + E + +R G V + + +
Sbjct: 3 LSGVELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAGEGWGECVTMAGPLYSSEYNDG 62
Query: 127 VKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRL 186
+ + A + + +EMA++DA + +
Sbjct: 63 AEHVLRHYLIPALLAAEDITAAKVTPLLAKFKGHRMAKGALEMAVLDAELRAHERSFAAE 122
Query: 187 FG 188
G
Sbjct: 123 LG 124
|
| >d1jpdx2 d.54.1.1 (X:-2-113) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]} Length = 116 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: L-Ala-D/L-Glu epimerase species: Escherichia coli [TaxId: 562]
Score = 47.8 bits (113), Expect = 1e-07
Identities = 20/116 (17%), Positives = 31/116 (26%), Gaps = 10/116 (8%)
Query: 73 RELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREA 132
E L P + S V + +E G G GE P + ++
Sbjct: 10 FEEAWPLHTPFVIARGSRSEARVVVVELE-EEGIKGTGECTPYPRYGESDASVMAQIMSV 68
Query: 133 CQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFG 188
L + + + R ++ AL D A L L G
Sbjct: 69 VPQLEKG---------LTREELQKILPAGAARNALDCALWDLAARRQQQSLADLIG 115
|
| >d2gdqa2 d.54.1.1 (A:4-118) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} Length = 115 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Score = 47.1 bits (111), Expect = 2e-07
Identities = 22/123 (17%), Positives = 35/123 (28%), Gaps = 10/123 (8%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL 126
+ R E L L P IR+ +G GWGE
Sbjct: 3 IVRIETFPLFHRLEKPYGDANGFKRYRTCYLIRIITESGIDGWGECVDWLPALHVGFTKR 62
Query: 127 VKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRL 186
+ + + + I + + V MAL + A + D + L
Sbjct: 63 IIPFLLGK-----QAGSRLSLVRTIQKWHQ-----RAASAVSMALTEIAAKAADCSVCEL 112
Query: 187 FGG 189
+GG
Sbjct: 113 WGG 115
|
| >d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Score = 48.8 bits (115), Expect = 4e-07
Identities = 30/211 (14%), Positives = 63/211 (29%), Gaps = 11/211 (5%)
Query: 195 STAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAI-HAVHPHCSFIL 252
+ P + Y G++ +K+ +G I D ++A+ + +
Sbjct: 11 AGGYYYPGKGLSMLRGEMRGYLDRGYNVVKMKIGGAPIEEDRMRIEAVLEEIGKDAQLAV 70
Query: 253 DANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADES 312
DAN + E + L D +E+ D++ ++ F
Sbjct: 71 DANGRFNLETGIAYAKMLRDY--PLFWYEEVGDPLDYALQAALAEFYPGPMATGENLFSH 128
Query: 313 CRSLNDVQKVMQENLASVVNIKLAK-FGVLGTLQIIKATRKSGLHLMID---GMIETRLA 368
+ N ++ + A +G+ + ++ + G G + L
Sbjct: 129 QDARNLLRYGGMRPDRDWLQFDCALSYGLCEYQRTLEVLKTHGWSPSRCIPHGGHQMSLN 188
Query: 369 TGFALHLAAGLGCIKYVNLNTPFLLSEDPFV 399
L L G Y +L P+ D
Sbjct: 189 IAAGLGLG---GNESYPDLFQPYGGFPDGVR 216
|
| >d1bqga2 d.54.1.1 (A:12-143) D-glucarate dehydratase {Pseudomonas putida [TaxId: 303]} Length = 132 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: D-glucarate dehydratase species: Pseudomonas putida [TaxId: 303]
Score = 45.9 bits (108), Expect = 7e-07
Identities = 21/127 (16%), Positives = 38/127 (29%), Gaps = 20/127 (15%)
Query: 75 LNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQ 134
+ S L+L + + + S+G VG GEV + + +A
Sbjct: 13 VAGHDSMLLNLSGAHGPLFTRNILILTDSSGHVGVGEVPGGEGIRKT-------LEDARH 65
Query: 135 FLRQSPPTTLNFALDEIARIL-------------PGSEFASVRAGVEMALIDAVANSIDI 181
L L+++ VE AL+D + + +
Sbjct: 66 LLINQSIGNYQSLLNKVRNAFADRDVGGRGLQTFDLRIAVHAVTAVESALLDLLGQHLQV 125
Query: 182 PLWRLFG 188
P+ L G
Sbjct: 126 PVAALLG 132
|
| >d1r6wa2 d.54.1.1 (A:-2-99) O-succinylbenzoate synthase {Escherichia coli [TaxId: 562]} Length = 101 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: O-succinylbenzoate synthase species: Escherichia coli [TaxId: 562]
Score = 44.9 bits (106), Expect = 8e-07
Identities = 16/107 (14%), Positives = 38/107 (35%), Gaps = 16/107 (14%)
Query: 68 QRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQT-KAL 126
+ A+ + + A + L ++ + + + + GWGE++ +P + + +A
Sbjct: 4 RSAQVYRWQIPMDAGVVLRDRRLKTRDGLYVCLR-EGEREGWGEISPLPGFSQETWEEAQ 62
Query: 127 VKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALID 173
+ + +A + SV GV AL +
Sbjct: 63 SVLLAWVN--------------NWLAGDCELPQMPSVAFGVSCALAE 95
|
| >d1yeya2 d.54.1.1 (A:2-140) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} Length = 139 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Score = 45.9 bits (108), Expect = 9e-07
Identities = 16/107 (14%), Positives = 27/107 (25%), Gaps = 12/107 (11%)
Query: 96 VAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARIL 155
+ + G V + G+ + V + + + L AR L
Sbjct: 34 AYVVLRTDGAEDLAGYGLVFTIGRGNDVQTAA-VAALAEHVVGLSVDKVIADLGAFARRL 92
Query: 156 -----------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGAS 191
V A D A + + PLWR +
Sbjct: 93 TNDSQLRWLGPEKGVMHMAIGAVINAAWDLAARAANKPLWRFIAELT 139
|
| >d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Score = 46.9 bits (110), Expect = 1e-06
Identities = 37/230 (16%), Positives = 77/230 (33%), Gaps = 12/230 (5%)
Query: 192 NSLSTAITIPAV-SPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIH-AVHPHCS 249
+S+ +++ + + + ++ Y G+ +KL + D + ++A+
Sbjct: 3 DSVPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIEPGW--DVEPVRAVRERFGDDVL 60
Query: 250 FILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA 309
+DAN YT +A ++ ++ + + L +
Sbjct: 61 LQVDANTAYTLGDAPQLARLDPFGLLLIEQPLEEEDVLGHAEL-------ARRIQTPICL 113
Query: 310 DESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLA 368
DES S ++ +VNIK + G L ++ G+ + GMIET L
Sbjct: 114 DESIVSARAAADAIKLGAVQIVNIKPGRVGGYLEARRVHDVCAAHGIPVWCGGMIETGLG 173
Query: 369 TGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQG 418
+ LA+ + + + +SG G G
Sbjct: 174 RAANVALASLPNFTLPGDTSASDRFYKTDITEPFVLSGGHLPVPTGPGLG 223
|
| >d2gdqa1 c.1.11.2 (A:119-374) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Score = 45.0 bits (105), Expect = 6e-06
Identities = 27/197 (13%), Positives = 62/197 (31%), Gaps = 7/197 (3%)
Query: 204 SPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAI-HAVHPHCSFILDANEGYTSE 261
+ + K GF +K+ +G + D + A+ H + ILDAN+ Y +
Sbjct: 21 WISRSVSNVEAQLKKGFEQIKVKIGGTSFKEDVRHINALQHTAGSSITMILDANQSYDAA 80
Query: 262 EAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQK 321
A + ++ I L E+P+ D + + E+ +
Sbjct: 81 AAFKWERYFSEWTNIGWL-EEPLPFDQPQDYAMLRSRLSVPVAG----GENMKGPAQYVP 135
Query: 322 VMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGC 381
++ + ++ + + + + + L+ +AL A L
Sbjct: 136 LLSQRCLDIIQPDVMHVNGIDEFRDCLQLARYFGVRASAHAYDGSLSRLYALFAQACLPP 195
Query: 382 IKYVNLNTPFLLSEDPF 398
+ + + D
Sbjct: 196 WSKMKNDHIEPIEWDVM 212
|
| >d1rvka2 d.54.1.1 (A:1-126) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} Length = 126 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 42.9 bits (100), Expect = 7e-06
Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 9/101 (8%)
Query: 92 NVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEI 151
VE + V +G G A +++ + + L ++
Sbjct: 32 QVEQAMLTVRTEDGQEGHSFTA-----PEIVRPHVIE-KFVKKVLIGEDHRDRERLWQDL 85
Query: 152 ARIL---PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189
A A V+ AL D S+ P+++L GG
Sbjct: 86 AHWQRGSAAQLTDRTLAVVDCALWDLAGRSLGQPVYKLIGG 126
|
| >d1jdfa2 d.54.1.1 (A:5-137) D-glucarate dehydratase {Escherichia coli [TaxId: 562]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: D-glucarate dehydratase species: Escherichia coli [TaxId: 562]
Score = 41.3 bits (96), Expect = 3e-05
Identities = 14/99 (14%), Positives = 33/99 (33%), Gaps = 10/99 (10%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTG--------DQTKALVKVREACQFLRQSPPTTLNFALD 149
+ ++ ++G G GE+ + K L + + +R +
Sbjct: 37 VIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRG 96
Query: 150 EIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFG 188
L + G+E A++D + + + + L G
Sbjct: 97 LQTFDLRTTIHV--VTGIEAAMLDLLGQHLGVNVASLLG 133
|
| >d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 41.6 bits (96), Expect = 9e-05
Identities = 32/220 (14%), Positives = 69/220 (31%), Gaps = 22/220 (10%)
Query: 190 ASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-------NITADFDVLQAIH 242
S + +P + A K G+ +KL+ ++ D A+
Sbjct: 9 GSIMCGDELEGGLATPEDYGRFAETLVKRGYKGIKLHTWMPPVSWAPDVKMDLKACAAVR 68
Query: 243 -AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARD 301
AV P ++DA Y+ +A+ + + E+P+ + +
Sbjct: 69 EAVGPDIRLMIDAFHWYSRTDALAL--GRGLEKLGFDWIEEPMDEQSL---SSYKWLSDN 123
Query: 302 TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMID 360
V + + + ++ ++ + G+ L+ + G+ +
Sbjct: 124 LDIPVVGPESAAGKHWHRAEWIKAGACDILRTGVNDVGGITPALKTMHLAEAFGMECEVH 183
Query: 361 GMIETRLATGFALHLAAGLGCIKYVN--LNTPFLLSEDPF 398
G T LH+ A ++ L PFL +D
Sbjct: 184 GN------TAMNLHVVAATKNCRWYERGLLHPFLEYDDGH 217
|
| >d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida [TaxId: 303]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Score = 39.2 bits (90), Expect = 4e-04
Identities = 32/201 (15%), Positives = 66/201 (32%), Gaps = 10/201 (4%)
Query: 204 SPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIH-AVHPHCSFILDANEGYTSE 261
A+E A +LGF +K +G + D V+++I AV ++D N+
Sbjct: 12 GVKLATERAVTAAELGFRAVKTKIGYPALDQDLAVVRSIRQAVGDDFGIMVDYNQSLDVP 71
Query: 262 EAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQK 321
A++ L E+P + D+ G + + + +
Sbjct: 72 AAIKRSQALQQE--GVTWIEEPTLQHDYEGHQRIQ---SKLNVPVQMGENWLGPEEMFKA 126
Query: 322 VMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGC 381
+ + + GV G ++ ++ G+ + E A A
Sbjct: 127 LSIGACRLAMPDAMKIGGVTGWIRASALAQQFGIPMSSHLFQEISAHLLAATPTA---HW 183
Query: 382 IKYVNLNTPFLLSEDPFVGGC 402
++ ++L + F GG
Sbjct: 184 LERLDLAGSVIEPTLTFEGGN 204
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 427 | |||
| d1muca1 | 242 | Muconate-lactonizing enzyme {Pseudomonas putida [T | 100.0 | |
| d2chra1 | 244 | Chlormuconate cycloisomerase {Alcaligenes eutrophu | 100.0 | |
| d1nu5a1 | 243 | Chlormuconate cycloisomerase {Pseudomonas sp. p51 | 100.0 | |
| d1jpma1 | 234 | L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: | 100.0 | |
| d1wufa1 | 244 | N-acylamino acid racemase {Listeria innocua [TaxId | 100.0 | |
| d1sjda1 | 242 | N-acylamino acid racemase {Amycolatopsis sp. [TaxI | 100.0 | |
| d1r0ma1 | 243 | N-acylamino acid racemase {Deinococcus radiodurans | 100.0 | |
| d1wuea1 | 241 | N-acylamino acid racemase {Enterococcus faecalis [ | 100.0 | |
| d2gl5a1 | 278 | Putative dehydratase protein STM2273 {Salmonella t | 100.0 | |
| d2gdqa1 | 256 | Hypothetical protein YitF {Bacillus subtilis [TaxI | 100.0 | |
| d2mnra1 | 227 | Mandelate racemase {Pseudomonas putida [TaxId: 303 | 100.0 | |
| d1rvka1 | 255 | Hypothetical protein Atu3453 {Agrobacterium tumefa | 100.0 | |
| d1yeya1 | 252 | RTS beta protein {Xanthomonas campestris pv. campe | 100.0 | |
| d1jdfa1 | 309 | D-glucarate dehydratase {Escherichia coli [TaxId: | 100.0 | |
| d1tzza1 | 247 | Hypothetical protein Bll6730 {Bradyrhizobium japon | 100.0 | |
| d1jpdx1 | 208 | L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: | 100.0 | |
| d1r6wa1 | 221 | O-succinylbenzoate synthase {Escherichia coli [Tax | 100.0 | |
| d1kcza1 | 253 | beta-Methylaspartase {Clostridium tetanomorphum [T | 99.97 | |
| d1kkoa1 | 251 | beta-Methylaspartase {Citrobacter amalonaticus [Ta | 99.95 | |
| d1jpma2 | 125 | L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: | 99.94 | |
| d1nu5a2 | 126 | Chlormuconate cycloisomerase {Pseudomonas sp. p51 | 99.93 | |
| d2chra2 | 126 | Chlormuconate cycloisomerase {Alcaligenes eutrophu | 99.92 | |
| d2gdqa2 | 115 | Hypothetical protein YitF {Bacillus subtilis [TaxI | 99.91 | |
| d1muca2 | 127 | Muconate-lactonizing enzyme (cis muconate cycloiso | 99.9 | |
| d1wufa2 | 126 | N-acylamino acid racemase {Listeria innocua [TaxId | 99.9 | |
| d1rvka2 | 126 | Hypothetical protein Atu3453 {Agrobacterium tumefa | 99.89 | |
| d2mnra2 | 130 | Mandelate racemase {Pseudomonas putida [TaxId: 303 | 99.89 | |
| d2gl5a2 | 122 | Putative dehydratase protein STM2273 {Salmonella t | 99.89 | |
| d1wuea2 | 126 | N-acylamino acid racemase {Enterococcus faecalis [ | 99.89 | |
| d1sjda2 | 125 | N-acylamino acid racemase {Amycolatopsis sp. [TaxI | 99.87 | |
| d1r0ma2 | 127 | N-acylamino acid racemase {Deinococcus radiodurans | 99.86 | |
| d1bqga2 | 132 | D-glucarate dehydratase {Pseudomonas putida [TaxId | 99.85 | |
| d1jpdx2 | 116 | L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: | 99.84 | |
| d1jdfa2 | 133 | D-glucarate dehydratase {Escherichia coli [TaxId: | 99.84 | |
| d1tzza2 | 140 | Hypothetical protein Bll6730 {Bradyrhizobium japon | 99.81 | |
| d1yeya2 | 139 | RTS beta protein {Xanthomonas campestris pv. campe | 99.77 | |
| d1r6wa2 | 101 | O-succinylbenzoate synthase {Escherichia coli [Tax | 99.72 | |
| d2akza1 | 294 | Enolase {Human (Homo sapiens), gamma isoform [TaxI | 99.22 | |
| d2fyma1 | 292 | Enolase {Escherichia coli [TaxId: 562]} | 99.19 | |
| d2al1a1 | 295 | Enolase {Baker's yeast (Saccharomyces cerevisiae) | 99.19 | |
| d2ptza1 | 291 | Enolase {Trypanosoma brucei [TaxId: 5691]} | 99.18 | |
| d1w6ta1 | 296 | Enolase {Streptococcus pneumoniae [TaxId: 1313]} | 99.18 | |
| d1w6ta2 | 137 | Enolase {Streptococcus pneumoniae [TaxId: 1313]} | 98.59 | |
| d2ptza2 | 139 | Enolase {Trypanosoma brucei [TaxId: 5691]} | 98.37 | |
| d2fyma2 | 139 | Enolase {Escherichia coli [TaxId: 562]} | 98.33 | |
| d2al1a2 | 141 | Enolase {Baker's yeast (Saccharomyces cerevisiae) | 97.98 | |
| d1pdza2 | 139 | Enolase {European lobster (Homarus vulgaris) [TaxI | 97.8 | |
| d2akza2 | 139 | Enolase {Human (Homo sapiens), gamma isoform [TaxI | 97.66 | |
| d1kcza2 | 160 | beta-Methylaspartase {Clostridium tetanomorphum [T | 97.17 | |
| d1kkoa2 | 160 | beta-Methylaspartase {Citrobacter amalonaticus [Ta | 97.11 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 96.78 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 96.4 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 95.3 | |
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 95.11 | |
| d1djqa1 | 340 | Trimethylamine dehydrogenase, N-terminal domain {M | 92.83 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 91.45 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 90.79 | |
| d1gwja_ | 374 | Morphinone reductase {Pseudomonas putida [TaxId: 3 | 90.14 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 89.76 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 89.61 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 89.03 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 87.07 | |
| d1r6wa2 | 101 | O-succinylbenzoate synthase {Escherichia coli [Tax | 86.88 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 86.84 | |
| d1q45a_ | 380 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 84.33 | |
| d2basa1 | 261 | Hypothetical protein YkuI, N-terminal domain {Baci | 80.97 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 80.32 |
| >d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Muconate-lactonizing enzyme species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=1.4e-48 Score=369.17 Aligned_cols=230 Identities=23% Similarity=0.272 Sum_probs=214.2
Q ss_pred CCceeeeeeecCCCHHHHHHHHHHHh-hcCCcEEEEeccC-CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHH
Q 014285 191 SNSLSTAITIPAVSPAEASELASKYC-KLGFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVL 267 (427)
Q Consensus 191 ~~~ip~~~~i~~~~~~~~~~~~~~~~-~~Gf~~iKlKiG~-~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l 267 (427)
|++||+|++++..+++++.+++.+.+ ++||++||+|+|. ++++|++++++||+ .++++.|+||||++|++++|++++
T Consensus 3 rd~ipv~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~~Di~~i~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~ 82 (242)
T d1muca1 3 RDSLEVAWTLASGDTARDIAEARHMLEIRRHRVFKLKIGANPVEQDLKHVVTIKRELGDSASVRVDVNQYWDESQAIRAC 82 (242)
T ss_dssp CSEEEBCEEECCSCHHHHHHHHHHHHHTTSCSEEEEECSSSCHHHHHHHHHHHHHHHGGGSEEEEECTTCBCHHHHHHHH
T ss_pred CceEEEEEEecCCCcHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHhCCCCEEEEecCCCCcHHHHHHHH
Confidence 68999999999988888876665544 5799999999996 58999999999999 579999999999999999999999
Q ss_pred HHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHH
Q 014285 268 GKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQI 346 (427)
Q Consensus 268 ~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~ 346 (427)
+.|+++++ .|||||++++|++++++|++ ++++||++||++.+..++.++++.+++|++|+|++++| +++++++
T Consensus 83 ~~l~~~~i--~~iEeP~~~~d~~~~~~L~~----~~~~pIa~~E~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~i 156 (242)
T d1muca1 83 QVLGDNGI--DLIEQPISRINRGGQVRLNQ----RTPAPIMADESIESVEDAFSLAADGAASIFALKIAKNGGPRAVLRT 156 (242)
T ss_dssp HHHHHTTC--CCEECCBCTTCHHHHHHHHH----HCSSCEEESTTCSSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHH
T ss_pred HHhhhhhH--HHhhcchhhhhhhhhhhhhh----hhhheeecccccccccchhhhhhcccccccccccccchhHHHHHHH
Confidence 99999997 49999999999999999986 68999999999999999999999999999999999997 9999999
Q ss_pred HHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCccee-ccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCc
Q 014285 347 IKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYV-NLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTI 425 (427)
Q Consensus 347 ~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~-e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~ 425 (427)
+++|+++|+++++|++++++|++++++|+++++++..+. +++.+..+.++++++++.++||++.+|++||||+++|+|+
T Consensus 157 ~~~A~~~gi~~~~~~~~~~~i~~~a~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~p~~pGlGi~~d~d~ 236 (242)
T d1muca1 157 AQIAEAAGIGLYGGTMLEGSIGTLASAHAFLTLRQLTWGTELFGPLLLTEEIVNEPPQYRDFQLHIPRTPGLGLTLDEQR 236 (242)
T ss_dssp HHHHHHHTCEEEECCSSCCHHHHHHHHHHHTTCSCCTTCBCCCGGGGBSSCSBSSCCEEETTEEECCCCSBTSCCBCHHH
T ss_pred HHHHHhCCCCcccccccccccchhhhhhHHhhccccccccccCchhhhhhhhccCCCeEECCEEECCCCCCCCeEECHHH
Confidence 999999999999999999999999999999999988776 5677777888999999999999999999999999999987
Q ss_pred C
Q 014285 426 V 426 (427)
Q Consensus 426 v 426 (427)
|
T Consensus 237 l 237 (242)
T d1muca1 237 L 237 (242)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Probab=100.00 E-value=2.3e-48 Score=368.10 Aligned_cols=230 Identities=21% Similarity=0.310 Sum_probs=211.6
Q ss_pred CCceeeeeeecCCCHHHH-HHHHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHH
Q 014285 191 SNSLSTAITIPAVSPAEA-SELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVL 267 (427)
Q Consensus 191 ~~~ip~~~~i~~~~~~~~-~~~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l 267 (427)
|++||+|++++..+++++ .+.++.+.++||++||+|+|. ++++|++++++||+ .++++.|+||||++|++++|++++
T Consensus 3 r~~vP~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~~D~~~v~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~ 82 (244)
T d2chra1 3 RSAIPIAWTLASGDTKRDLDSAVEMIERRRHNRFKVKLGFRSPQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYI 82 (244)
T ss_dssp CSEEEBEEEECSSCHHHHHHHHHHHHHTTSCCEEEEECSSSCHHHHHHHHHHHHHHTTTTSEEEEECTTCCCTHHHHHHH
T ss_pred CCcEEEEEEEcCCCcHHHHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEeCCCCcchHHHHHHH
Confidence 678999999988776665 555566767899999999985 89999999999999 579999999999999999999999
Q ss_pred HHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHH
Q 014285 268 GKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQI 346 (427)
Q Consensus 268 ~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~ 346 (427)
++|+++++ .|+|||++++|++++++|++ ++++||++||++.+..+++++++.+++|++|+|++++| +++++++
T Consensus 83 ~~l~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~ipia~~E~~~~~~~~~~~i~~~~~d~v~~d~~~~GGit~~~~i 156 (244)
T d2chra1 83 PELEALGV--ELIEQPVGRENTQALRRLSD----NNRVAIMADESLSTLASAFDLARDRSVDVFSLKLCNMGGVSATQKI 156 (244)
T ss_dssp HHHHTTTC--CEEECCSCSSCHHHHHHHHH----HCSSEEEESSSCCSHHHHHHHHTTTCCSEECCCHHHHTSHHHHHHH
T ss_pred HHHhhhhH--HHHhhhhhhccchhhhhhcc----ceeeeeeecccccccchhhhhhhcceeEEEeeccccccchHHHHHH
Confidence 99999997 49999999999999999986 68999999999999999999999999999999999997 9999999
Q ss_pred HHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCccee-ccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCc
Q 014285 347 IKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYV-NLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTI 425 (427)
Q Consensus 347 ~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~-e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~ 425 (427)
+++|+++|+++++|++++++|++++++|+++++++..+. ++..++.+.++++.+++.++||++.+|++||||+++|+++
T Consensus 157 ~~~a~~~gi~~~~~~~~~~~i~~~a~~hl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~pGlGv~~d~~~ 236 (244)
T d2chra1 157 AAVAEASGIASYGGTMLDSTIGTSVALQLYSTVPSLPFGCELIGPFVLADTLSHEPLEIRDYELQVPTGVGHGMTLDEDK 236 (244)
T ss_dssp HHHHHHHTCEECCCCCSCCHHHHHHHHHHHTTSSCCTTCBCCCHHHHBSCCSBSCCCCBCSSEEECCCSSSTTCCBCHHH
T ss_pred HHHHHHcCCCeeeccccccccchhHHHHHHHhCCCCcceeccCchhhhhhhcccCCceeECCEEECCCCCCCCeEECHHH
Confidence 999999999999999999999999999999999987664 5666777778888888999999999999999999999987
Q ss_pred C
Q 014285 426 V 426 (427)
Q Consensus 426 v 426 (427)
|
T Consensus 237 l 237 (244)
T d2chra1 237 V 237 (244)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Probab=100.00 E-value=6.4e-48 Score=364.74 Aligned_cols=230 Identities=23% Similarity=0.357 Sum_probs=211.2
Q ss_pred CCceeeeeeecCCCHHHHHH-HHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHH
Q 014285 191 SNSLSTAITIPAVSPAEASE-LASKYCKLGFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVL 267 (427)
Q Consensus 191 ~~~ip~~~~i~~~~~~~~~~-~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l 267 (427)
|++||+|++++..++++..+ .++++.++||++||+|+|. ++++|+++++++|+ +++++.|+||||++||+++|++++
T Consensus 3 R~~ipv~~~~~~~~~~~~~~e~~~~~~~~G~~~~KiKvG~~~~~~Di~~v~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~ 82 (243)
T d1nu5a1 3 RTSIPIAWTLASGDTARDIDSALEMIETRRHNRFKVKLGARTPAQDLEHIRSIVKAVGDRASVRVDVNQGWDEQTASIWI 82 (243)
T ss_dssp CSEEEBCEEECSSCHHHHHHHHHHHHHTTSCSEEEEECSSSCHHHHHHHHHHHHHHHGGGCEEEEECTTCCCHHHHHHHH
T ss_pred CCceEEEEEEcCCChHHHHHHHHHHHHhCCCCEEEEEeCCCCHHHHHHHHHHHHHHhCcccceEEECCCCccchhHHHHH
Confidence 68999999988777766644 4555556899999999985 89999999999999 589999999999999999999999
Q ss_pred HHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHH
Q 014285 268 GKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQI 346 (427)
Q Consensus 268 ~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~ 346 (427)
+.|+++++. |+|||++++|++++++|++ ++++||++||++.+..++.++++.+++|++++|++++| +++++++
T Consensus 83 ~~l~~~~~~--~iEeP~~~~~~~~~~~l~~----~~~ipIa~gE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~i 156 (243)
T d1nu5a1 83 PRLEEAGVE--LVEQPVPRANFGALRRLTE----QNGVAILADESLSSLSSAFELARDHAVDAFSLKLCNMGGIANTLKV 156 (243)
T ss_dssp HHHHHHTCC--EEECCSCTTCHHHHHHHHH----HCSSEEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHH
T ss_pred HHhcchhhh--hhhhhhhhccccccccchh----ccccccccccccccchhhhhccccccccccccccccccchHHHHHH
Confidence 999999974 9999999999999999986 68999999999999999999999999999999999997 9999999
Q ss_pred HHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCccee-ccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCc
Q 014285 347 IKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYV-NLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTI 425 (427)
Q Consensus 347 ~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~-e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~ 425 (427)
+++|+++|+++++|++++|+|++++++|+++++++..+. ++..++...++++.+++.++||++.+|++||||+++|+|+
T Consensus 157 ~~~a~~~gi~~~~~~~~~s~i~~~a~~h~~aa~p~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~p~~pGlGv~~d~d~ 236 (243)
T d1nu5a1 157 AAVAEAAGISSYGGTMLDSTVGTAAALHVYATLPSLPYGCELIGPWVLGDRLTQQDLEIKDFEVHLPLGSGLGVDLDHDK 236 (243)
T ss_dssp HHHHHHHTCEEEECCSSCCHHHHHHHHHHHTTSSCCTTCBCCCHHHHBSSCSBSSCCCEETTEEECCCSSBTSCCBCHHH
T ss_pred HHHHHHcCCCcccccccchhhhHHHHHHHHHhCCCCceeeecCchHHhhhhcccCCCeEECCEEECCCCCCcCeeECHHH
Confidence 999999999999999999999999999999999998764 5666666777888899999999999999999999999987
Q ss_pred C
Q 014285 426 V 426 (427)
Q Consensus 426 v 426 (427)
|
T Consensus 237 l 237 (243)
T d1nu5a1 237 V 237 (243)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=6e-47 Score=355.89 Aligned_cols=226 Identities=35% Similarity=0.541 Sum_probs=215.2
Q ss_pred CCceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHH
Q 014285 191 SNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLG 268 (427)
Q Consensus 191 ~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~ 268 (427)
|++||+++++++++|+++.+++++++++||++||+|+|. ++++|++++++||+ +++++.|+||+|++|++++|+++++
T Consensus 2 r~~v~~~~t~~~~~pe~~~~~a~~~~~~G~~~~Kikig~~~~~~d~~~i~~ir~~~g~~~~i~vD~N~~~~~~~a~~~~~ 81 (234)
T d1jpma1 2 RDTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIR 81 (234)
T ss_dssp CSEEEBCEEECCSCHHHHHHHHHHHHHTTCCEEEEECSSSCHHHHHHHHHHHHHHHGGGSEEEEECTTCSCHHHHHHHHH
T ss_pred CCcceEEEEEcCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHcCchhhhhhhcccccchHHHHHHHH
Confidence 688999999999999999999999999999999999996 89999999999999 6899999999999999999999999
Q ss_pred HhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHH
Q 014285 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQII 347 (427)
Q Consensus 269 ~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~ 347 (427)
.|+++++.+.|+|||++++|++++++|++ ++++||++||++.+..++.++++.+++|++|+|++++| ++++++++
T Consensus 82 ~le~~~~~i~~~EeP~~~~d~~~~~~l~~----~~~~pia~gE~~~~~~~~~~~i~~~~~d~v~~d~~~~GGit~~~~i~ 157 (234)
T d1jpma1 82 KMEDAGLGIELVEQPVHKDDLAGLKKVTD----ATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKIN 157 (234)
T ss_dssp HHHHTTCCEEEEECCSCTTCHHHHHHHHH----HCSSCEEESTTCSSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHH
T ss_pred HHHhccCceeeecCCccccCHHHHHHhhc----cccceeecccccccchhhhhhhccCCcCeEEEeeecCCCHHHHHHHH
Confidence 99986655579999999999999999986 68999999999999999999999999999999999997 99999999
Q ss_pred HHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcceeccCCCcccccCCCCCceeeeCcEEecCCCCCcccc
Q 014285 348 KATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGF 420 (427)
Q Consensus 348 ~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve 420 (427)
++|+++|+++++|++++++|++++++|+++++++..++|++.|..+.++++.++++++||++.+|++|||||-
T Consensus 158 ~~a~~~g~~~~~~~~~~~~i~~~a~~~~aa~~~~~~~~e~~~~~~~~~~~~~~~~~~~~G~l~~p~~pGLGi~ 230 (234)
T d1jpma1 158 AMAEACGVECMVGSMIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLGII 230 (234)
T ss_dssp HHHHHTTCCEEECCSSCCHHHHHHHHHHHHHCTTEEEECCCGGGGBSSCCEEESCEEETTEEECCCSSBTCEE
T ss_pred HHHHhcCeeEeecccccCCchHHHHHHHHHhccCCceeecCCchhhhhhccCCCceEECCEEECCCCCeeeeE
Confidence 9999999999999999999999999999999999989999999888889999899999999999999999983
|
| >d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Probab=100.00 E-value=1.3e-46 Score=355.76 Aligned_cols=228 Identities=21% Similarity=0.349 Sum_probs=209.7
Q ss_pred CCCceeeeeeecC-CCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHH
Q 014285 190 ASNSLSTAITIPA-VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLG 268 (427)
Q Consensus 190 ~~~~ip~~~~i~~-~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~ 268 (427)
++++||+|+++++ .+++++.+.+++++++||++||+|+|. ++|+++++++|+..|++.||+|+|++|+.++|+ +++
T Consensus 1 ~r~~i~~~~s~g~~~~~e~~~~~~~~~~~~Gf~~~Kikvg~--~~D~~~v~~ir~~~~~~~l~vDaN~~~~~~~a~-~~~ 77 (244)
T d1wufa1 1 TKESIKVGVSIGLQQNVETLLQLVNQYVDQGYERVKLKIAP--NKDIQFVEAVRKSFPKLSLMADANSAYNREDFL-LLK 77 (244)
T ss_dssp CCSEEEBCEEECCCSCHHHHHHHHHHHHHHTCCEEEEECBT--TBSHHHHHHHHTTCTTSEEEEECTTCCCGGGHH-HHH
T ss_pred CCCeEEEeEEeCCCCCHHHHHHHHHHHHHCCCCEEEEEeCC--cHHHHHHHHHHHhccchhhhhhhhccccchhhh-hhh
Confidence 3689999999988 489999999999999999999999997 578999999999878999999999999999997 679
Q ss_pred HhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHH
Q 014285 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQII 347 (427)
Q Consensus 269 ~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~ 347 (427)
+|+++++ .|||||++++|++++++|++ ++++||++||++.+..++.++++.+++|++|+|++++| ++++++++
T Consensus 78 ~l~~~~~--~wiEeP~~~~d~~~~~~l~~----~~~~pia~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~ki~ 151 (244)
T d1wufa1 78 ELDQYDL--EMIEQPFGTKDFVDHAWLQK----QLKTRICLDENIRSVKDVEQAHSIGSCRAINLKLARVGGMSSALKIA 151 (244)
T ss_dssp TTGGGTC--SEEECCSCSSCSHHHHHHHT----TCSSEEEECTTCCSHHHHHHHHHHTCCSEEEECTGGGTSHHHHHHHH
T ss_pred cccccch--hhhcCcccccchhhhhcccc----ccccccccCccccchhhhhhhccccccceeecccccccchhhHHHHH
Confidence 9999997 49999999999999999985 78999999999999999999999999999999999997 99999999
Q ss_pred HHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcceeccCC-CcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 348 KATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNT-PFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 348 ~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~~~-p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
++|+++|+++++|++++++++.++++|+++..++..+.+++. +..+.++++.+++.++||++.+|++||||+|+|++.|
T Consensus 152 ~~a~~~gi~v~~h~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~i~~p~~pGLGie~d~~~l 231 (244)
T d1wufa1 152 EYCALNEILVWCGGMLEAGVGRAHNIALAARNEFVFPGDISASNRFFAEDIVTPAFELNQGRLKVPTNEGIGVTLDLKVL 231 (244)
T ss_dssp HHHHHTTCEEEECCCCCCHHHHHHHHHHHTSSSCCSCBSCCCGGGTBSSCSBSSCCCCCSSEEECCCSSBTSCCBCHHHH
T ss_pred HHHHHcCCEEecCCCCCccHHHHHHHHHHhccCccchhhhcccchhhhhhccCCCceEECCEEECCCCCCcCeeECHHHH
Confidence 999999999999999999999999999999888765555443 3446778888899999999999999999999999875
|
| >d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Probab=100.00 E-value=3.1e-46 Score=352.68 Aligned_cols=227 Identities=19% Similarity=0.268 Sum_probs=207.0
Q ss_pred CCceeeeeeecC-CCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHH
Q 014285 191 SNSLSTAITIPA-VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLG 268 (427)
Q Consensus 191 ~~~ip~~~~i~~-~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~ 268 (427)
|++||+|++++. .+++++.+++++++++||++||+|+|. ++|+++++++|+ .++++.||+|+|++|++++|+++.+
T Consensus 2 R~~ipvy~s~g~~~~~~~~~~~~~~~~~~Gf~~~Kikvg~--~~Di~~i~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~ 79 (242)
T d1sjda1 2 RDSVPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIEP--GWDVEPVRAVRERFGDDVLLQVDANTAYTLGDAPQLAR 79 (242)
T ss_dssp CSEEEBEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECBT--TBSHHHHHHHHHHHCTTSEEEEECTTCCCGGGHHHHHT
T ss_pred CCeeEeeEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECCc--hhHHHHHHHHHHHhCCCeeEeeccccccchhhhhHHhh
Confidence 688999999986 589999999999999999999999986 689999999999 5899999999999999999998764
Q ss_pred HhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHH
Q 014285 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQII 347 (427)
Q Consensus 269 ~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~ 347 (427)
|+++++ .|||||++++|++++++|++ ++++||++||++.+..++.++++.+++|++|+|++++| ++++++++
T Consensus 80 -l~~~~~--~~iEeP~~~~d~~~~~~l~~----~~~~pia~gE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGit~~~~i~ 152 (242)
T d1sjda1 80 -LDPFGL--LLIEQPLEEEDVLGHAELAR----RIQTPICLDESIVSARAAADAIKLGAVQIVNIKPGRVGGYLEARRVH 152 (242)
T ss_dssp -TGGGCC--SEEECCSCTTCHHHHHHHHT----TCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECTTTTTSHHHHHHHH
T ss_pred -hhhhhh--HHHHhhhhhhhHHHHHHHHh----ccCcccccccccccchhhhhhhhcCccCEEEeccccCccchhhhHHH
Confidence 999997 49999999999999999985 78999999999999999999999999999999999998 99999999
Q ss_pred HHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcceeccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 348 KATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 348 ~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
++|+++|+++++|+++++++++++++|+++..++....++..+..+.++.+++++.++||++.+|++||||+|+|+|+|
T Consensus 153 ~~A~~~~i~~~~h~~~~~~i~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~p~~pGLGie~d~~~l 231 (242)
T d1sjda1 153 DVCAAHGIPVWCGGMIETGLGRAANVALASLPNFTLPGDTSASDRFYKTDITEPFVLSGGHLPVPTGPGLGVAPIPELL 231 (242)
T ss_dssp HHHHHTTCCEEECCCCCCHHHHHHHHHHHTSTTBCSCBSCCCGGGTCSSCSSSCCCCSSSEEECCCSSBTSCCCCHHHH
T ss_pred HHHHHCCCEEeecccccchhHHHHHHHHhhccccccccccccchhhhHhhccCCCeEECCEEECCCCCCCcEEECHHHH
Confidence 9999999999999999999999999999765554434466666666667778888999999999999999999999875
|
| >d1r0ma1 c.1.11.2 (A:133-375) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Probab=100.00 E-value=4.1e-46 Score=352.14 Aligned_cols=227 Identities=18% Similarity=0.291 Sum_probs=208.4
Q ss_pred CCceeeeeeecCC-CHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHH
Q 014285 191 SNSLSTAITIPAV-SPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGK 269 (427)
Q Consensus 191 ~~~ip~~~~i~~~-~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~ 269 (427)
|++||+|++++.. +++++.+.+++++++||++||+|+|. +.|+++++++|+..|++.|+||+|++||+++|+++ +.
T Consensus 2 r~~v~~y~s~g~~~~~e~~~~~~~~~~~~G~~~~KiKvg~--~~D~~~v~~ir~~~~d~~l~vD~n~~~~~~~a~~~-~~ 78 (243)
T d1r0ma1 2 KEQVEVGVSLGIQADEQATVDLVRRHVEQGYRRIKLKIKP--GWDVQPVRATREAFPDIRLTVDANSAYTLADAGRL-RQ 78 (243)
T ss_dssp CSEEEBCEEECCCSSHHHHHHHHHHHHHTTCSCEEEECBT--TBSHHHHHHHHHHCTTSCEEEECTTCCCGGGHHHH-HT
T ss_pred CCEEEeeeEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcCc--chhHHHHHHHHHhccCceEEEeccccCchHHHHHh-hh
Confidence 6899999998864 78888999999999999999999997 46999999999987899999999999999999875 89
Q ss_pred hhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHH
Q 014285 270 LNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIK 348 (427)
Q Consensus 270 L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~ 348 (427)
|+++++ .|||||++++|++++++|++ ++++|||+||++.+..+++++++.+++|++|+|++++| +++++++++
T Consensus 79 l~~~~~--~~iEeP~~~~d~~~~~~l~~----~~~ipia~gE~~~~~~~~~~~i~~~~~d~v~~d~~~~GGit~~~~i~~ 152 (243)
T d1r0ma1 79 LDEYDL--TYIEQPLAWDDLVDHAELAR----RIRTPLCLDESVASASDARKALALGAGGVINLKVARVGGHAESRRVHD 152 (243)
T ss_dssp TGGGCC--SCEECCSCTTCSHHHHHHHH----HCSSCEEESTTCCSHHHHHHHHHHTSCSEEEECTTTTTSHHHHHHHHH
T ss_pred hhhccc--hhhhhhccccchHHHHHHhh----cCCcccccccchhhhhhhhhhhhcccccceecccceeccHHHHHHHHH
Confidence 999997 49999999999999999986 68999999999999999999999999999999999998 999999999
Q ss_pred HHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcceeccC-CCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 349 ATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLN-TPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 349 ~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~~-~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+|+++|+++++|+++++++++++++|++++.++..+.+.. .+..+.++++.++++++||++.+|++||||+++|+|+|
T Consensus 153 ~A~~~gi~v~~h~~~~~~i~~~a~~h~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~~p~~pGlGie~d~~~l 231 (243)
T d1r0ma1 153 VAQSFGAPVWCGGMLESGIGRAHNIHLSTLSNFRLPGDTSSASRYWERDLIQEPLEAVDGLMPVPQGPGTGVTLDREFL 231 (243)
T ss_dssp HHHHTTCCEEECCCCCCHHHHHHHHHHTTSTTBCSCBSCCCGGGTBSSCSBSSCCCCBTTEEECCCSSBTSCCBCHHHH
T ss_pred HHHHCCCceecccccccchhhhHHHHHHhhccccccccccccchhhhhhhcCCCCeeECCEEECCCCCCCcEeECHHHH
Confidence 9999999999999999999999999999988876655543 34456778888999999999999999999999999875
|
| >d1wuea1 c.1.11.2 (A:1127-1367) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Probab=100.00 E-value=9.1e-46 Score=349.20 Aligned_cols=228 Identities=18% Similarity=0.285 Sum_probs=207.1
Q ss_pred CCCceeeeeeecCC-CHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHH
Q 014285 190 ASNSLSTAITIPAV-SPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLG 268 (427)
Q Consensus 190 ~~~~ip~~~~i~~~-~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~ 268 (427)
+|++||+|+++++. +++++.+++++++++||++||+|+|+ +.|+++++++|+..+++.|+||+|++|+.++|+++ .
T Consensus 1 tr~~ipv~~s~g~~~~~~~~~~~~~~~~~~G~~~~Kikvg~--~~D~~~v~~ir~~~~d~~l~vDaN~~~~~~~a~~~-~ 77 (241)
T d1wuea1 1 TRRKIPVGISLGIQEDLPQLLKQVQLAVEKGYQRVKLKIRP--GYDVEPVALIRQHFPNLPLMVDANSAYTLADLPQL-Q 77 (241)
T ss_dssp CCSEEECCEEECCCSCHHHHHHHHHHHHHTTCSCEEEECBT--TBSHHHHHHHHHHCTTSCEEEECTTCCCGGGHHHH-H
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEEEcCc--cHHHHHHHHHHHhccccceeecccccCCHHHhhhh-h
Confidence 36899999998874 78899999999999999999999997 57899999999988999999999999999999865 6
Q ss_pred HhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHH
Q 014285 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQII 347 (427)
Q Consensus 269 ~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~ 347 (427)
++.++++ .|||||++.+|++++++|++ .+++|||+||++.+..+++++++.+++|++|+|++++| ++++++++
T Consensus 78 ~~~~~~i--~~iEeP~~~~~~~~~~~l~~----~~~~pIa~gE~~~~~~~~~~~i~~~~~d~i~~d~~~~GGit~~~~i~ 151 (241)
T d1wuea1 78 RLDHYQL--AMIEQPFAADDFLDHAQLQR----ELKTRICLDENIRSLKDCQVALALGSCRSINLKIPRVGGIHEALKIA 151 (241)
T ss_dssp GGGGSCC--SCEECCSCTTCSHHHHHHHT----TCSSCEEECTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHH
T ss_pred hhhhhhh--hhhcCcccccchhhhhhhhc----ccccccccCcccccchhhhhhhhhhhhhhhccccccccCcHHHHHHH
Confidence 7888987 59999999999999999985 78999999999999999999999999999999999997 99999999
Q ss_pred HHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcceeccCCC-cccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 348 KATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTP-FLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 348 ~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~~~p-~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
++|+++|+++++|+++++++++++++|+++..++....+++.+ ..+.++++.+++.++||++.+|++||||+++|+++|
T Consensus 152 ~~a~~~~i~v~~~~~~~~~i~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~p~~pGlGi~~d~~~l 231 (241)
T d1wuea1 152 AFCQENDLLVWLGGMFESGVGRALNLQFASQPTFSFPGDISATERYFYEDIITEPFILEQGTMTVPQGLGIGVTLSQTNL 231 (241)
T ss_dssp HHHHHTTCEEEECCCCCCHHHHHHHHHHHTSTTCCSCCSCCCGGGTBSCCSBSSCCCEETTEEECCCSSBTCCCBCHHHH
T ss_pred HHHHHcCCEEEecccccccccccchhhhccccccccccccccccchhhhhccCCCCeEECCEEECCCCCCCceEECHHHH
Confidence 9999999999999999999999999999887666544466543 335678888899999999999999999999999875
|
| >d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Putative dehydratase protein STM2273 species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1e-45 Score=356.14 Aligned_cols=230 Identities=15% Similarity=0.184 Sum_probs=208.0
Q ss_pred CCceeeeeeec----------CCCHHHHHHHHHHHhhcCCcEEEEeccC------------------------CchhhHH
Q 014285 191 SNSLSTAITIP----------AVSPAEASELASKYCKLGFSTLKLNVGR------------------------NITADFD 236 (427)
Q Consensus 191 ~~~ip~~~~i~----------~~~~~~~~~~~~~~~~~Gf~~iKlKiG~------------------------~~~~d~~ 236 (427)
+++|++|++.. ..+|+++.+.+++++++||+++|++.+. +++.|++
T Consensus 3 ~dki~~YAs~~~~~~~~~~~~~~tPe~~~~~a~~~~~~Gf~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~ 82 (278)
T d2gl5a1 3 NEKLRTYASQLQFGWGDKNHILVTPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMGEA 82 (278)
T ss_dssp CSSEEEEEECGGGCCTTCCSCCCSHHHHHHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCCGGGGSCCCHHHHHHHHH
T ss_pred CCceeccccCCcCCCCcccccCCCHHHHHHHHHHHHHcCCCEEEEccccCCccccccccccccccccccccHHHHHHHHH
Confidence 68999999841 2489999999999999999999998642 2567999
Q ss_pred HHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCC
Q 014285 237 VLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRS 315 (427)
Q Consensus 237 ~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~ 315 (427)
++++||+ +|+++.||+|+|++|+.++|++++++|+++++ .|+|||++++|++++++|++ ++++|||+||++.+
T Consensus 83 ~v~aiRe~vG~~~~l~vDan~~~~~~~Ai~~~~~L~~~~l--~wiEePi~~~d~~~~~~L~~----~~~ipIa~gE~~~~ 156 (278)
T d2gl5a1 83 RIAAMREAMGDDADIIVEIHSLLGTNSAIQFAKAIEKYRI--FLYEEPIHPLNSDNMQKVSR----STTIPIATGERSYT 156 (278)
T ss_dssp HHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCE--EEEECSSCSSCHHHHHHHHH----HCSSCEEECTTCCT
T ss_pred HHHHHHHHhccccceeecccccccchhhHHHHHHhccccc--ceecccccccchhhhhhhcc----ccccceecccccCC
Confidence 9999999 68999999999999999999999999999997 59999999999999999986 78999999999999
Q ss_pred HHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcceeccCCC--cc
Q 014285 316 LNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTP--FL 392 (427)
Q Consensus 316 ~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~~~p--~~ 392 (427)
..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+ ++++|+++|++|++++++|+.+.|.+.. ..
T Consensus 157 ~~~~~~~i~~~a~di~~~d~~~~GGit~~~kia~la~~~gi~v~~H~-~~~~i~~~a~~hl~aa~~n~~~~e~~~~~~~~ 235 (278)
T d2gl5a1 157 RWGYRELLEKQSIAVAQPDLCLCGGITEGKKICDYANIYDTTVQVHV-CGGPVSTVAALHMETAIPNFIIHEHHTNAMKA 235 (278)
T ss_dssp THHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHTTTCEECCCC-CSSHHHHHHHHHHHHHCTTBCCEEEETTTTCH
T ss_pred hHHHhhhhccccceeEeeccccccchhhHHHhhhhhhhhcccccccc-ccCchhhhhhhhhhhccCceeeeeccccchhh
Confidence 999999999999999999999997 9999999999999999999997 5899999999999999999888765432 22
Q ss_pred cccCCCCCceeeeCcEEecCCCCCcccccCCCcCC
Q 014285 393 LSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVS 427 (427)
Q Consensus 393 ~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v~ 427 (427)
...+++++++.++||++.+|++||||||+|+++|.
T Consensus 236 ~~~~l~~~~~~~~~G~~~~p~~PGLGie~de~~l~ 270 (278)
T d2gl5a1 236 SIRELCTHDYQPENGYYVAPEQPGLGQELNDEVVK 270 (278)
T ss_dssp HHHTTBSSCCCCBTTEECCCCSSBTSCCBCHHHHT
T ss_pred hHHhhccCCCeeeCCEEECCCCCCCceeeCHHHHh
Confidence 34578888899999999999999999999998763
|
| >d2gdqa1 c.1.11.2 (A:119-374) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=3e-45 Score=348.89 Aligned_cols=229 Identities=14% Similarity=0.201 Sum_probs=202.1
Q ss_pred CCceeeeeeecCC--C---HHHHHHHHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHH
Q 014285 191 SNSLSTAITIPAV--S---PAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEA 263 (427)
Q Consensus 191 ~~~ip~~~~i~~~--~---~~~~~~~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A 263 (427)
|++||+|++++.. + .+++.+++++++++||++||+|+|. ++++|++++++||+ +|+++.|+||||++|++++|
T Consensus 3 Rd~ip~Yas~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~Kikvg~~~~~~di~~v~avr~~~G~~~~l~vDan~~~~~~~A 82 (256)
T d2gdqa1 3 REEIPVYASFQSYSDSPQWISRSVSNVEAQLKKGFEQIKVKIGGTSFKEDVRHINALQHTAGSSITMILDANQSYDAAAA 82 (256)
T ss_dssp CSEEEEEEECCCBCSSTTHHHHHHHHHHHHHTTTCCEEEEECSSSCHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHH
T ss_pred CCeEEeCeecCcCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHcCCCeEEeeccccCCCHHHH
Confidence 7899999987542 2 3566778888899999999999985 89999999999999 68999999999999999999
Q ss_pred HHHHHHhhhC-CCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HH
Q 014285 264 VEVLGKLNDM-GVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VL 341 (427)
Q Consensus 264 ~~~l~~L~~~-~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~ 341 (427)
+++++.|+++ ++ .|+|||++++|++++++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++
T Consensus 83 ~~~~~~l~~~~~i--~~~EeP~~~~d~~~~~~l~~----~~~ipIa~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit 156 (256)
T d2gdqa1 83 FKWERYFSEWTNI--GWLEEPLPFDQPQDYAMLRS----RLSVPVAGGENMKGPAQYVPLLSQRCLDIIQPDVMHVNGID 156 (256)
T ss_dssp HTTHHHHTTCSCE--EEEECCSCSSCHHHHHHHHT----TCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCTTTTTHHH
T ss_pred HHHHHHHhhcCce--eEeccccccchHHHHHHHhh----cccceeecCccccchhhHHHHHHhhcceeeeccccccccHH
Confidence 9999999996 55 59999999999999999985 79999999999999999999999999999999999997 99
Q ss_pred HHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcceeccCCCcccccCCCCC------ceeeeCcEEecCCCC
Q 014285 342 GTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVG------GCEVSGAIYNFTNAR 415 (427)
Q Consensus 342 ~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~~~p~~~~~~~~~~------~~~~~~G~i~~p~~p 415 (427)
++++++++|+++|+++++|+ ++++++.++++|+++++++..+++...+..+..+.+.. +++++||++.+|++|
T Consensus 157 ~~~~i~~~a~~~~i~v~~h~-~~~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~p 235 (256)
T d2gdqa1 157 EFRDCLQLARYFGVRASAHA-YDGSLSRLYALFAQACLPPWSKMKNDHIEPIEWDVMENPFTDLVSLQPSKGMVHIPKGK 235 (256)
T ss_dssp HHHHHHHHHHHHTCEECCCC-SSCSHHHHHHHHHHHTSCCSSSCTTSCSCCEEEECSSCGGGGGBCCCCBTTEEECCCSS
T ss_pred HHHHHHHHHhhhcccccccc-cccccchHHHHHHHHhCccchhhccccccceeeccccccccccCCceeeCCEEECCCCC
Confidence 99999999999999999996 57899999999999999998777654432222222222 357899999999999
Q ss_pred CcccccCCCcC
Q 014285 416 GQGGFLKWTIV 426 (427)
Q Consensus 416 GlGve~d~~~v 426 (427)
|||+|+|+|+|
T Consensus 236 GLGieid~~~l 246 (256)
T d2gdqa1 236 GIGTEINMEIV 246 (256)
T ss_dssp BTSSCBCHHHH
T ss_pred CCCeEeCHHHH
Confidence 99999999875
|
| >d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=8.4e-44 Score=332.98 Aligned_cols=218 Identities=17% Similarity=0.221 Sum_probs=200.5
Q ss_pred eeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHHhh
Q 014285 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLN 271 (427)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~ 271 (427)
|+.|.+.++++++.+.+.+++++++||++||+|+|. ++++|++++++||+ .++++.|+||+|++|++++|+++++.|+
T Consensus 2 ~~ay~~~~~d~~~~~~e~~~~~~~~G~~~~KikvG~~~~~~di~~i~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~ 81 (227)
T d2mnra1 2 VQAYDSHSLDGVKLATERAVTAAELGFRAVKTKIGYPALDQDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQ 81 (227)
T ss_dssp EEEEEECCSCHHHHHHHHHHHHHHTTCSEEEEECCCSSHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHH
T ss_pred ceeeccCCCCcHHHHHHHHHHHHHCCCCEEEEccCCCCHHHHHHHHHHHHHHhCCCcEEEEeccccCChHHHHHHHHHhh
Confidence 567888888889999999999999999999999995 78999999999999 5899999999999999999999999999
Q ss_pred hCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHH
Q 014285 272 DMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKAT 350 (427)
Q Consensus 272 ~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A 350 (427)
++++ .|+|||+++++++++++|++ ++++|||+||++++..++.++++.+++|++|+|++++| ++++++++++|
T Consensus 82 ~~~~--~~iEeP~~~~~~~~~~~l~~----~~~ipia~gE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGit~~~~i~~~a 155 (227)
T d2mnra1 82 QEGV--TWIEEPTLQHDYEGHQRIQS----KLNVPVQMGENWLGPEEMFKALSIGACRLAMPDAMKIGGVTGWIRASALA 155 (227)
T ss_dssp HHTC--SEEECCSCTTCHHHHHHHHH----TCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBTTTTTHHHHHHHHHHHH
T ss_pred hchh--hhhcCcccccchhhhHHHHH----HcCCccccCceeEeechhhhhHhcCceeeeecccccccchhhHHHHHHHH
Confidence 9997 49999999999999999986 78999999999999999999999999999999999997 99999999999
Q ss_pred HHcCCcEEEcccCchhHHHHHHHHHHhhcCCcceeccCCCcccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 351 RKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 351 ~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+++|+++++|++. .+++|+++++++..++|.. .+.++++.+++.++||++.+|++||||+|+|+++|
T Consensus 156 ~~~g~~~~~h~~~------~~~~hl~aa~~~~~~~e~~---~~~~~~~~~~~~i~~G~~~~p~~pGlGie~d~~~l 222 (227)
T d2mnra1 156 QQFGIPMSSHLFQ------EISAHLLAATPTAHWLERL---DLAGSVIEPTLTFEGGNAVIPDLPGVGIIWREKEI 222 (227)
T ss_dssp HHHTCCBCCBSCH------HHHHHHHHTCTTBCCEEEC---CSSGGGBCCCSEEETTEEECCSSSBTCCCBCHHHH
T ss_pred HHcCCcccccchh------hhhhhhhhcCCccceeecc---cCchhhcCCCceeECCEEECCCCCCCCEEECHHHH
Confidence 9999999998753 4688999999998887643 34567788889999999999999999999999876
|
| >d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=100.00 E-value=1.3e-43 Score=337.13 Aligned_cols=224 Identities=17% Similarity=0.298 Sum_probs=193.6
Q ss_pred CCceeeeeeec--------CCCHHHHHHHHHHHhhcCCcEEEEeccC-------CchhhHHHHHHHHH-hCCCcEEEEeC
Q 014285 191 SNSLSTAITIP--------AVSPAEASELASKYCKLGFSTLKLNVGR-------NITADFDVLQAIHA-VHPHCSFILDA 254 (427)
Q Consensus 191 ~~~ip~~~~i~--------~~~~~~~~~~~~~~~~~Gf~~iKlKiG~-------~~~~d~~~l~~ir~-~~~~~~L~vDA 254 (427)
|++||+|+++. ..+|+++.+.+++++++||++||+|+|. ++++|++++++||+ .|+++.|+|||
T Consensus 2 Rd~i~~Yas~~~~~~~~~~~~tpe~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~~d~~~v~avR~~~G~~~~l~vDa 81 (255)
T d1rvka1 2 RDKVLAYGSIMCGDELEGGLATPEDYGRFAETLVKRGYKGIKLHTWMPPVSWAPDVKMDLKACAAVREAVGPDIRLMIDA 81 (255)
T ss_dssp CSEEEEEEEECCCCCCTTTTSSHHHHHHHHHHHHHHTCSEEEEECCCTTSTTCCCHHHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred CCeeEeceeecCCCccccCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCccccccCHHHHHHHHHHHHHHcCCccceeccc
Confidence 68999998864 3479999999999999999999999983 57999999999999 58999999999
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHH-HHHHHHHcCCCcEEEe
Q 014285 255 NEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLN-DVQKVMQENLASVVNI 333 (427)
Q Consensus 255 N~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~-~~~~ll~~~a~~~i~l 333 (427)
|++||+++|++++++|+++++ .|+|||++++|+++|++|++ ++++||++||++.+.. +++++++.+++|++|+
T Consensus 82 N~~~~~~~A~~~~~~l~~~~l--~~iEeP~~~~d~~~~~~l~~----~~~~pI~~~E~~~~~~~~~~~~i~~~~~dii~~ 155 (255)
T d1rvka1 82 FHWYSRTDALALGRGLEKLGF--DWIEEPMDEQSLSSYKWLSD----NLDIPVVGPESAAGKHWHRAEWIKAGACDILRT 155 (255)
T ss_dssp CTTCCHHHHHHHHHHHHTTTC--SEEECCSCTTCHHHHHHHHH----HCSSCEEECSSCSSHHHHHHHHHHTTCCSEEEE
T ss_pred ccccccchhhhhhhhcccchh--hhhcCCcccccHHHHHHHHH----hcccceeehhhcccchhhhhhhhhhchhhhccc
Confidence 999999999999999999997 49999999999999999986 7899999999999976 5688999999999999
Q ss_pred CCCCcc-HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcceeccC--CCccc----ccC-CCCCceeee
Q 014285 334 KLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLN--TPFLL----SED-PFVGGCEVS 405 (427)
Q Consensus 334 k~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~~--~p~~~----~~~-~~~~~~~~~ 405 (427)
|++++| ++++++++++|+++|+++++|++.+ +++|+++++++..+++.. .|... .+. .....+.++
T Consensus 156 d~~~~GGit~~~~i~~~a~~~gi~v~~h~~~~------~~~hl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 229 (255)
T d1rvka1 156 GVNDVGGITPALKTMHLAEAFGMECEVHGNTA------MNLHVVAATKNCRWYERGLLHPFLEYDDGHDYLKSLSDPMDR 229 (255)
T ss_dssp CHHHHTSHHHHHHHHHHHHHTTCCEEECCCSH------HHHHHHHHCSSCCCEEEEEECTTSCGGGCCTTBSSCSSCBCT
T ss_pred cccccccchHHHHHHHHHHHhccceeccccch------hHHHHHHHhhhhhhcccccccccccccchhhhhhccCCCeee
Confidence 999998 9999999999999999999999653 577888888887765421 22111 111 122334579
Q ss_pred CcEEecCCCCCcccccCCCcC
Q 014285 406 GAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 406 ~G~i~~p~~pGlGve~d~~~v 426 (427)
||++.+|++|||||++|+++|
T Consensus 230 ~G~i~vp~~PGLGieid~~~l 250 (255)
T d1rvka1 230 DGFVHVPDRPGLGEDIDFTFI 250 (255)
T ss_dssp TSEEECCSCSBTCCCBCHHHH
T ss_pred CCEEECCCCCCCCeeECHHHH
Confidence 999999999999999999876
|
| >d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Probab=100.00 E-value=1.1e-43 Score=337.32 Aligned_cols=228 Identities=18% Similarity=0.227 Sum_probs=195.1
Q ss_pred eeeeeeec--C-CCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHHHHHHHH
Q 014285 194 LSTAITIP--A-VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGK 269 (427)
Q Consensus 194 ip~~~~i~--~-~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A~~~l~~ 269 (427)
+|+|.+.+ + .+++++.+.+++++++||++||+|+|.+++.|++++++||+ ++++++|+||+|++|++++|+++++.
T Consensus 2 ~P~Ya~~~g~~~~s~ee~~~~a~~~~~~Gf~~~KikvG~~~~~di~~v~~vr~~~g~~~~l~vDaN~~~~~~~A~~~~~~ 81 (252)
T d1yeya1 2 YPAYTTSPGWLGYSDEKLVRLAKEAVADGFRTIKLKVGANVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWMRQ 81 (252)
T ss_dssp EEEEECTTCC----CHHHHHHHHHHHHTTCSEEEEECCSCHHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHT
T ss_pred cCceeccCCcCCCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHHhCCCceEeeccccCcchHHHHHHHHh
Confidence 57888643 2 37899999999999999999999999999999999999999 58999999999999999999999999
Q ss_pred hhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHH
Q 014285 270 LNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIK 348 (427)
Q Consensus 270 L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~ 348 (427)
|+++++. |+|||++++|+.+++++.+ +.+++||++||++.+..+++++++.+++|++|+|++++| +++++++++
T Consensus 82 l~~~~~~--~iEeP~~~~d~~~~~~~~~---~~~~ipia~gE~~~~~~~~~~~i~~~a~d~~~~d~~~~GGit~~~kia~ 156 (252)
T d1yeya1 82 LAEFDIA--WIEEPTSPDDVLGHAAIRQ---GITPVPVSTGEHTQNRVVFKQLLQAGAVDLIQIDAARVGGVNENLAILL 156 (252)
T ss_dssp TGGGCCS--CEECCSCTTCHHHHHHHHH---HSTTSCEECCTTCCSHHHHHHHHHHTCCSEECCCTTTSSHHHHHHHHHH
T ss_pred hhhcCce--eecCCcchhhHHHHHHHhh---ccCCCceeccccccchhhhhhHhhccccceeccccccccCchhhhHHHH
Confidence 9999984 9999999999999998875 247899999999999999999999999999999999998 999999999
Q ss_pred HHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCccee-ccCCC-cccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 349 ATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYV-NLNTP-FLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 349 ~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~-e~~~p-~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+|+++|+++++|+..++.++.+++++.++...+.... +...+ .....+.+.+++.++||++.+|++||||+|+|+|+|
T Consensus 157 ~A~~~~i~v~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~v~vp~~pGLGield~d~l 236 (252)
T d1yeya1 157 LAAKFGVRVFPHAGGVGLCELVQHLAMADFVAITGKMEDRAIEFVDHLHQHFLDPVRIQHGRYLAPEVPGFSAEMHPASI 236 (252)
T ss_dssp HHHHHTCEECCCCCTTTHHHHHHHHHHHHHHHTTCCCTTCCEEECCSSGGGBSSCCCBSSSEECCCCSSBCSCCBCHHHH
T ss_pred HHHHcCCEEecCCCCcHHHHHHHHHHHHhhhccccccccccccchhhhHHhcCCCCeEECCEEECCCCCCCCeeECHHHH
Confidence 9999999999999777777666666666554443222 11111 112245567788899999999999999999999876
|
| >d1jdfa1 c.1.11.2 (A:138-446) D-glucarate dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: D-glucarate dehydratase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.1e-42 Score=337.35 Aligned_cols=215 Identities=14% Similarity=0.170 Sum_probs=190.3
Q ss_pred CHHHHHHHHHHHhhc-CCcEEEEeccC-CchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEe
Q 014285 204 SPAEASELASKYCKL-GFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFE 281 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~-Gf~~iKlKiG~-~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iE 281 (427)
+|+++.+.+++++++ ||+++|+|+|. ++++|+++++++|+..|+++||||||++||+++|+++++.|+ +++ .|+|
T Consensus 47 ~p~~~~~~a~~~~~~~Gf~~~KiKvG~~~~~~di~~v~avr~~~pd~~l~vDaN~~~s~~~Ai~~~~~le-~~l--~w~E 123 (309)
T d1jdfa1 47 TPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLK-GSL--AYAE 123 (309)
T ss_dssp SHHHHHHHHHHHHHHHCCSCEEEECSSSCHHHHHHHHHHHHHHCTTSCEEEECTTBBCHHHHHHHHHHTT-TTC--SCEE
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHHHHHHCCCCeEEeeccCCCCHHHHHHHHHHHh-hcc--hhhh
Confidence 788898999888887 99999999996 789999999999998789999999999999999999999996 576 5999
Q ss_pred CCCCCCCh----hhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCc
Q 014285 282 QPVHRDDW----SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLH 356 (427)
Q Consensus 282 qP~~~~d~----~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~ 356 (427)
||++++|. +.+++|++ ++++|||+||++.+..++.++++.+++|++|+|+ ++| ++++++++++|+++|++
T Consensus 124 EPv~~~d~~~~~~~l~~lr~----~~~ipIa~gE~~~~~~~~~~~i~~~a~di~~~d~-~~GGit~~~kia~lA~~~gi~ 198 (309)
T d1jdfa1 124 DPCGAEQGFSGREVMAEFRR----ATGLPTATNMIATDWRQMGHTLSLQSVDIPLADP-HFWTMQGSVRVAQMCHEFGLT 198 (309)
T ss_dssp SCBCCBTTBCHHHHHHHHHH----HHCCCEEESSSSSSHHHHHHHHHHTCCSEEBCCH-HHHCHHHHHHHHHHHHHHTCC
T ss_pred hhcccCcchhhHHHHHHhhc----ccccceecCcccchhhhhhhhhhhccceeeeccc-ccccchHHHHHHHHHHhcCCC
Confidence 99998874 45666664 7899999999999999999999999999999997 676 99999999999999999
Q ss_pred EEEcccCchhHHHHHHHHHHhhcCCccee-ccCCC-cccccCCCCCceeeeCcEEecCCCCCcccccCCCcC
Q 014285 357 LMIDGMIETRLATGFALHLAAGLGCIKYV-NLNTP-FLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (427)
Q Consensus 357 ~~~~s~~es~ig~~a~~hlaaal~~~~~~-e~~~p-~~~~~~~~~~~~~~~~G~i~~p~~pGlGve~d~~~v 426 (427)
+++|+..+++|++++++|++++++|..+. +...+ ....++++.+++.++||++.+|++||||||+|+|+|
T Consensus 199 v~~H~~~~~~i~~aa~~hlaaa~p~~~~~~~~~~~~~~~~~~l~~~~~~i~dG~i~vPd~PGLGvelD~d~L 270 (309)
T d1jdfa1 199 WGSHSDNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGLVQVPEKPGLGVEIDMDQV 270 (309)
T ss_dssp CBCCCCSCCHHHHHHHHHHHTTCCSCCCCBCCCHHHHTTTCCSBSSCCCCBTTEEECCCSSBTCCCBCHHHH
T ss_pred ccccCCCCcHHHHHHHHHHHHhCCCCccccccccccchhhHhhcCCCceEECCEEECCCCCCCCeEECHHHH
Confidence 99999989999999999999999886443 22221 234566778889999999999999999999999876
|
| >d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=100.00 E-value=8.2e-42 Score=323.36 Aligned_cols=226 Identities=14% Similarity=0.109 Sum_probs=193.3
Q ss_pred CCCceeeeeeecC----CCHHHHHHHHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHH-hCCCcEEEEeCCCCCCHHHH
Q 014285 190 ASNSLSTAITIPA----VSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEA 263 (427)
Q Consensus 190 ~~~~ip~~~~i~~----~~~~~~~~~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~-~~~~~~L~vDAN~~~s~~~A 263 (427)
.+++|++|++.+. .+++++.+++++++++||++||+|+|. ++++|++++++||+ .++++.||+|+|++|++++|
T Consensus 2 ~~~kv~vYas~g~~~~~~~~~~~~~~~~~~~~~Gf~~~Kikvg~~~~~~di~~v~~vr~~~g~~~~l~vDan~~~~~~~A 81 (247)
T d1tzza1 2 ANPRVFVYAAGGYYYPGKGLSMLRGEMRGYLDRGYNVVKMKIGGAPIEEDRMRIEAVLEEIGKDAQLAVDANGRFNLETG 81 (247)
T ss_dssp CCCEEEEEEECCCC----CHHHHHHHHHHHHTTTCSEEEEECSSSCHHHHHHHHHHHHHHHTTTCEEEEECTTCCCHHHH
T ss_pred CCCceEEEEeCCcCCCCcCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHhccCCceEEecccccccchhH
Confidence 3679999998764 478999999999999999999999995 89999999999999 58999999999999999999
Q ss_pred HHHHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCC----CcEEEeCCCCcc
Q 014285 264 VEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL----ASVVNIKLAKFG 339 (427)
Q Consensus 264 ~~~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a----~~~i~lk~~~~G 339 (427)
+++++.|+++++ .|+|||++++|++++++|++ ++++||++||++.+..+++++++.++ +|++|+|++++|
T Consensus 82 i~~~~~l~~~~i--~wiEeP~~~~d~~~~~~l~~----~~~ipia~gE~~~~~~~~~~~i~~~a~~~~~Di~~~d~~~~G 155 (247)
T d1tzza1 82 IAYAKMLRDYPL--FWYEEVGDPLDYALQAALAE----FYPGPMATGENLFSHQDARNLLRYGGMRPDRDWLQFDCALSY 155 (247)
T ss_dssp HHHHHHHTTSCC--SEEECCSCTTCHHHHHHHTT----TCCSCEEECTTCCSHHHHHHHHHHSCCCTTTCEECCCTTTTT
T ss_pred HHHHhhcchhhh--hhhccccccccchhhhhhhh----ccccccccchhhhhhHHHHHHHHccCCcCcceeEeecccccc
Confidence 999999999997 59999999999999999985 78999999999999999999998765 599999999997
Q ss_pred -HHHHHHHHHHHHHcCCcEEEcccCchhHHHHHHHHHHhhcCCccee-ccCCCcccccCCCCCceeeeCcEEecCCCCCc
Q 014285 340 -VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYV-NLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQ 417 (427)
Q Consensus 340 -i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~-e~~~p~~~~~~~~~~~~~~~~G~i~~p~~pGl 417 (427)
++++++++++|+++|+++.+|+.. +++..+++.+.+.++.+...+ ++.. ..+.+.+++.++||++.+|++|||
T Consensus 156 Git~~~~i~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~G~i~~p~~pGl 230 (247)
T d1tzza1 156 GLCEYQRTLEVLKTHGWSPSRCIPH-GGHQMSLNIAAGLGLGGNESYPDLFQ----PYGGFPDGVRVENGHITMPDLPGI 230 (247)
T ss_dssp CHHHHHHHHHHHHHTTCCGGGBCCS-CCBHHHHHHHHHHTCSCEEECTTCST----TTBSCSTTCCCBTTEEECCCCSBT
T ss_pred chhHHHHHHHHHHHcCCCeeccCCC-cHHHHHHHHHHHhcCCCceeecchhh----hhhcCCCCcEEECCEEECCCCCCc
Confidence 999999999999999998887654 344445555554444333222 2222 235567788899999999999999
Q ss_pred ccccCCCcC
Q 014285 418 GGFLKWTIV 426 (427)
Q Consensus 418 Gve~d~~~v 426 (427)
|+|+|+|++
T Consensus 231 Gie~d~d~l 239 (247)
T d1tzza1 231 GFEGKSDLY 239 (247)
T ss_dssp SGGGCHHHH
T ss_pred ceeECHHHH
Confidence 999999875
|
| >d1jpdx1 c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.7e-40 Score=302.84 Aligned_cols=205 Identities=26% Similarity=0.389 Sum_probs=188.0
Q ss_pred CCceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHh
Q 014285 191 SNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKL 270 (427)
Q Consensus 191 ~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L 270 (427)
.+++++++++++++|+++.+++++++++||++||+|+|. +.|++++++||+..|++.||||+|++|++++|+++++.|
T Consensus 3 p~~~~~~~tv~~~tpe~~~~~a~~~~~~G~~~~KiKvg~--~~d~~~i~~ir~~~~d~~l~vDaN~~~s~~~A~~~~~~l 80 (208)
T d1jpdx1 3 PETVITAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDN--HLISERMVAIRTAVPDATLIVDANESWRAEGLAARCQLL 80 (208)
T ss_dssp CSEEEBCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCS--SCHHHHHHHHHHHCTTSEEEEECTTCCCSTTHHHHHHHH
T ss_pred CCceeeeeEcCCCCHHHHHHHHHHHHHCCCCEEEEECCC--CcHHHHHHHHHHhccccEEEEecccccchhHHHHHHHHH
Confidence 467899999999999999999999999999999999997 468999999999888999999999999999999999999
Q ss_pred hhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHH
Q 014285 271 NDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKA 349 (427)
Q Consensus 271 ~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~ 349 (427)
+++++ .|||||++++|++++++++ ..+||++||++.+..+++++ .+++|++++|++++| ++++++++++
T Consensus 81 ~~~~l--~~iEeP~~~~d~~~~~~l~------~~~pi~~~E~~~~~~~~~~l--~~~~d~~~~d~~~~GGi~~~~~~a~~ 150 (208)
T d1jpdx1 81 ADLGV--AMLEQPLPAQDDAALENFI------HPLPICADESCHTRSNLKAL--KGRYEMVNIKLDKTGGLTEALALATE 150 (208)
T ss_dssp HHTTC--CEEECCSCTTSCGGGGSSC------CSSCEEESTTCSSGGGHHHH--BTTBSEEEECHHHHTSHHHHHHHHHH
T ss_pred Hhccc--cccCccCCccCHHHHHhhh------cccceecCCCcCCHHHHHHH--hhccCEEEeCCcccCCHHHHHHHHHH
Confidence 99997 4999999999999998873 57899999999999999887 467999999999997 9999999999
Q ss_pred HHHcCCcEEEcccCchhHHHHHHHHHHhhcCCcceeccCCCcccccCCCCCceeeeCcEEec
Q 014285 350 TRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNF 411 (427)
Q Consensus 350 A~~~gi~~~~~s~~es~ig~~a~~hlaaal~~~~~~e~~~p~~~~~~~~~~~~~~~~G~i~~ 411 (427)
|+++|+++++||++|+++++++++|+++ +..+.|+++++++.+++ .++++++||++++
T Consensus 151 a~~~g~~~~~~~~~~~~i~~~a~~~~a~---~~~~~dld~~~~~~~di-~~~l~i~dG~i~l 208 (208)
T d1jpdx1 151 ARAQGFSLMLGCMLCTSRAISAALPLVP---QVSFADLDGPTWLAVDV-EPALQFTTGELHL 208 (208)
T ss_dssp HHHTTCEEEECCCSCCHHHHHHHGGGGG---GCSEECCCGGGGBSSCC-SSCCEEETTEEEC
T ss_pred HHHcCCeeeecCCchhHHHHHHHHHHhc---cCCCccccchhhhhhcC-CCCCeEeCCEEeC
Confidence 9999999999999999999999999875 45678999998877775 6789999999975
|
| >d1r6wa1 c.1.11.2 (A:100-320) O-succinylbenzoate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: O-succinylbenzoate synthase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3e-35 Score=273.45 Aligned_cols=186 Identities=22% Similarity=0.182 Sum_probs=163.2
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEeccC-CchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCC-CCceE
Q 014285 203 VSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGV-IPVLF 280 (427)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKiG~-~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l-~~~~i 280 (427)
+||+++.++++++ +||+++|+|||. ++++|++++++||+..|+++||+|||++|++++|+++++.|++++. .+.|+
T Consensus 13 gdpde~~~~~~~~--~G~~~~KiKvG~~~~~~D~~~i~~vr~~~pd~~L~vDaN~~w~~~~A~~~~~~l~~~~~~~ie~~ 90 (221)
T d1r6wa1 13 GDPDDLILKLADM--PGEKVAKVRVGLYEAVRDGMVVNLLLEAIPDLHLRLDANRAWTPLKGQQFAKYVNPDYRDRIAFL 90 (221)
T ss_dssp SCHHHHHHHHHTC--CSSEEEEEECSSSCHHHHHHHHHHHHHHCTTEEEEEECTTCBCHHHHHHHHHTSCTTTGGGEEEE
T ss_pred CCHHHHHHHHHHc--CCCCeEEEeeCCCCHHHHHHHHHHHHHHCCCCeEEEeCCCCCCHHHHHHHHHHHHHhhcCCeeee
Confidence 5899998887664 799999999996 7899999999999988999999999999999999999999998632 23599
Q ss_pred eCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEE
Q 014285 281 EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMI 359 (427)
Q Consensus 281 EqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~ 359 (427)
|||++ +.++++++++ .+++||++||++.+..+ ..+...++|++++|++++| ++++++++++|+++|+++++
T Consensus 91 E~P~~--~~~~~~~l~~----~~~ipIa~dEs~~~~~~--~~~~~~~~d~v~ik~~~~GGit~~~kia~~A~~~gl~~~~ 162 (221)
T d1r6wa1 91 EEPCK--TRDDSRAFAR----ETGIAIAWDESLREPDF--AFVAEEGVRAVVIKPTLTGSLEKVREQVQAAHALGLTAVI 162 (221)
T ss_dssp ECCBS--SHHHHHHHHH----HHCCCEEESGGGGSTTC--CCCCCTTEEEEEECHHHHCCHHHHHHHHHHHHHTTCEEEE
T ss_pred cchhh--hhhHHHHHhh----cccchhhhccccchhHH--HHHHHhcCcEEEecccccccHHHHHHHHHHHHHcCCcEEE
Confidence 99996 5678888875 78999999999987654 3455678999999999997 99999999999999999999
Q ss_pred cccCchhHHHHHHHHHHhhcCCcceeccCCCcccccCCC
Q 014285 360 DGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPF 398 (427)
Q Consensus 360 ~s~~es~ig~~a~~hlaaal~~~~~~e~~~p~~~~~~~~ 398 (427)
||++||+||+++++|+|+++++..+.+++++..+.+++.
T Consensus 163 ~~~~es~ig~~a~~hlaa~~~~~~~~gldt~~~~~~d~~ 201 (221)
T d1r6wa1 163 SSSIESSLGLTQLARIAAWLTPDTIPGLDTLDLMQAQQV 201 (221)
T ss_dssp BCSSCCHHHHHHHHHHHHHHCTTSCCBCTTGGGBSCEES
T ss_pred cCCcchHHHHHHHHHHHHhCCCCCCCCCCchhHHhhccc
Confidence 999999999999999999998877778887766666554
|
| >d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Clostridium tetanomorphum [TaxId: 1553]
Probab=99.97 E-value=2.8e-30 Score=243.36 Aligned_cols=196 Identities=15% Similarity=0.163 Sum_probs=159.0
Q ss_pred CCCCCceeeeeeecCCCHHHHHH----HHHHHhhcCCcEEEEeccCCchhhHH-------HHHHHHH-hCCCcEEEEe--
Q 014285 188 GGASNSLSTAITIPAVSPAEASE----LASKYCKLGFSTLKLNVGRNITADFD-------VLQAIHA-VHPHCSFILD-- 253 (427)
Q Consensus 188 gg~~~~ip~~~~i~~~~~~~~~~----~~~~~~~~Gf~~iKlKiG~~~~~d~~-------~l~~ir~-~~~~~~L~vD-- 253 (427)
|+...+||+|.+.+...+....+ .++.+.+.||+.+|+|+|.+.++|.+ +++++|+ .++++.|++|
T Consensus 1 G~~~~~VPiy~~~G~~~~~~~d~~i~k~~~~~~~~~~~~vK~K~G~~~~~~~e~~~~i~~rI~~~r~~~g~~~~l~iD~~ 80 (253)
T d1kcza1 1 GAEINAVPVFAQSGDDRYDNVDKMIIKEADVLPHALINNVEEKLGLKGEKLLEYVKWLRDRIIKLRVREDYAPIFHIDVY 80 (253)
T ss_dssp TCCCCCCCEECCCTTCTTHHHHHHHHTTCSEEEECCCCCCCCCCCTTSHHHHHHHHHHHHHHHHHCSSTTCCCEEEEECT
T ss_pred CCCcCCCCeeeccCCcccccHHHHHHHHhhhhhhhhhhhhchhcCCCccccHHHHHHHHHHHHHHhcccccCceeeehhh
Confidence 45678899998887665443322 23333356899999999987766655 6666666 4789999999
Q ss_pred ----CCCCCCHHHHHHHHHHhhhCCCC-CceEeCCCCCCCh----hhHHHHHHhhc-cccCCeEEecCCCCCHHHHHHHH
Q 014285 254 ----ANEGYTSEEAVEVLGKLNDMGVI-PVLFEQPVHRDDW----SGLHDVSNFAR-DTYGISVVADESCRSLNDVQKVM 323 (427)
Q Consensus 254 ----AN~~~s~~~A~~~l~~L~~~~l~-~~~iEqP~~~~d~----~~~~~L~~~~r-~~~~iPIa~dE~~~~~~~~~~ll 323 (427)
+|++|++++|+++++.|++.... +.|||||++.+|| ++|++|++.+. ..+++||++||++.+..++++++
T Consensus 81 ~~~~~n~~~~~~eai~~~~~L~~~~~~y~i~iEqP~~~~d~~~~~e~~a~lr~~~~~~g~~vpI~~DE~~~~~~d~~~~i 160 (253)
T d1kcza1 81 GTIGAAFDVDIKAMADYIQTLAEAAKPFHLRIEGPMDVEDRQKQMEAMRDLRAELDGRGVDAELVADEWCNTVEDVKFFT 160 (253)
T ss_dssp THHHHHTTTCHHHHHHHHHHHHHHHTTSCEEEECSBCCSSHHHHHHHHHHHHHHHHHHTCCEEEEECTTCCSHHHHHHHH
T ss_pred hccCccCCCCHHHHHHHHHHHHHhcCCCCceEecCCCCccHhhHHHHHHHHHHHHhccCCccceeccccccCHHHHHHHH
Confidence 56699999999999999865321 2389999999985 56777765221 13689999999999999999999
Q ss_pred HcCCCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEc-ccCchhHHHHHHHHHHhhcCCcc
Q 014285 324 QENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMID-GMIETRLATGFALHLAAGLGCIK 383 (427)
Q Consensus 324 ~~~a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~-s~~es~ig~~a~~hlaaal~~~~ 383 (427)
+.+++|++++|++++| ++++++++++|+++|+++|++ ++.|+.++.++++|+|.+.+...
T Consensus 161 ~~~a~d~v~iK~~k~GGi~~al~~~~~a~~~Gi~~~vg~~~~Et~~s~~a~~hla~A~~~~~ 222 (253)
T d1kcza1 161 DNKAGHMVQIKTPDLGGVNNIADAIMYCKANGMGAYCGGTCNETNRSAEVTTNIGMACGARQ 222 (253)
T ss_dssp HTTCSSEEEECTGGGSSTHHHHHHHHHHHHTTCEEEECCCTTSCHHHHHHHHHHHHHHTCSE
T ss_pred HhCCcCeeeccccccCCHHHHHHHHHHHHHcCCcEEEcCccCCcchHHHHHHHHHHhcCcch
Confidence 9999999999999998 999999999999999999997 58899999999999999986653
|
| >d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Citrobacter amalonaticus [TaxId: 35703]
Probab=99.95 E-value=2.9e-28 Score=228.91 Aligned_cols=192 Identities=15% Similarity=0.177 Sum_probs=157.4
Q ss_pred CCceeeeeeecCCCHH---HHH-HHHHHHhhcCCcEEEEeccCC-------chhhHHHHHHHHH-hCCCcEEEEeCCC--
Q 014285 191 SNSLSTAITIPAVSPA---EAS-ELASKYCKLGFSTLKLNVGRN-------ITADFDVLQAIHA-VHPHCSFILDANE-- 256 (427)
Q Consensus 191 ~~~ip~~~~i~~~~~~---~~~-~~~~~~~~~Gf~~iKlKiG~~-------~~~d~~~l~~ir~-~~~~~~L~vDAN~-- 256 (427)
.++||+|.+.+.+.++ .|. +.++.+.+.+|+.+|.|+|.+ ++.+.++++++|. .++++.|++|+|+
T Consensus 4 ~~~VP~~g~~g~~~~~~~e~mI~~~a~~~~~~~~~~lk~kvG~~g~~~~e~~~~~~~rI~~~r~~~G~~~~i~iD~~~~~ 83 (251)
T d1kkoa1 4 PEAIPLFGQSGDDRYIAVDKMILKGVDVLPHALINNVEEKLGFKGEKLREYVRWLSDRILSLRSSPRYHPTLHIDVYGTI 83 (251)
T ss_dssp CCCCCEECCCTTCTTHHHHHHHHTTCSEEEETTCCCCCCCCCTTSHHHHHHHHHHHHHHHHHCSSTTCCCEEEEECTTHH
T ss_pred CCCcccccccCCCcccchHHHHHhhhHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhCcCCCcceeecccccc
Confidence 4678988877766554 332 223333456899999999963 3445677888876 5889999999876
Q ss_pred ----CCCHHHHHHHHHHhhhCCCC-CceEeCCCCC----CChhhHHHHHHhhc-cccCCeEEecCCCCCHHHHHHHHHcC
Q 014285 257 ----GYTSEEAVEVLGKLNDMGVI-PVLFEQPVHR----DDWSGLHDVSNFAR-DTYGISVVADESCRSLNDVQKVMQEN 326 (427)
Q Consensus 257 ----~~s~~~A~~~l~~L~~~~l~-~~~iEqP~~~----~d~~~~~~L~~~~r-~~~~iPIa~dE~~~~~~~~~~ll~~~ 326 (427)
+|++++|++++++|++.... +.|||||++. +|++++++|++.+. +.+++||++||++.+..+++++++.+
T Consensus 84 ~~~~~~~~~~ai~~l~~L~~~~~~~~l~IEqP~~~~~~~~d~~gl~~l~~~l~~~g~~vpI~~DE~~~t~~d~~~~i~~~ 163 (251)
T d1kkoa1 84 GLIFDMDPVRCAEYIASLEKEAQGLPLYIEGPVDAGNKPDQIRMLTAITKELTRLGSGVKIVADEWCNTYQDIVDFTDAG 163 (251)
T ss_dssp HHHTTTCHHHHHHHHHHTGGGGTTSCEEEECCCCCSSHHHHHHHHHHHHHHHHHHTCCCEEEECTTCCSHHHHHHHHHTT
T ss_pred ccccCCCHHHHHHHHHHHHHhcCCCceeecCCcccccchHHHHHHHHHHHHHhccCCCceEeccceeCCHHHHHHHHHhC
Confidence 89999999999999875321 2499999974 56888999976432 13689999999999999999999999
Q ss_pred CCcEEEeCCCCcc-HHHHHHHHHHHHHcCCcEEEc-ccCchhHHHHHHHHHHhhcCCc
Q 014285 327 LASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMID-GMIETRLATGFALHLAAGLGCI 382 (427)
Q Consensus 327 a~~~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~-s~~es~ig~~a~~hlaaal~~~ 382 (427)
++|++++|++++| ++++++++++|+++|++++++ ++.||+++.+|++|+|.+.++.
T Consensus 164 a~d~v~iK~~k~GGi~~a~~~~~~A~~~Gi~~~~g~~~~ET~~~~~a~~hla~a~~~~ 221 (251)
T d1kkoa1 164 SCHMVQIKTPDLGGIHNIVDAVLYCNKHGMEAYQGGTCNETEISARTCVHVALAARPM 221 (251)
T ss_dssp CCSEEEECGGGGSSTHHHHHHHHHHHHHTCEEEECCCTTSCHHHHHHHHHHHHHHCCS
T ss_pred CccceeccccccCCHHHHHHHHHHHHHCCCeEEEeCcccCcchHHHHHHHHHHhcCCc
Confidence 9999999999998 999999999999999999988 5889999999999999987654
|
| >d1jpma2 d.54.1.1 (A:1-125) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=99.94 E-value=1.2e-26 Score=195.91 Aligned_cols=123 Identities=30% Similarity=0.524 Sum_probs=110.6
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHH-HHHHHHH-HhhHhcCCCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTK-ALVKVRE-ACQFLRQSPPT 142 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~-~~~~~~~-~~~~l~g~~~~ 142 (427)
|||++++++.+++|+++||.++.++.+.++.++|+|+|++|++|||||.+.+.++++..+ ....+++ +.|.|+|+++.
T Consensus 1 MkI~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~iv~i~t~~G~~G~GE~~~~~~~~~e~~~~~~~~i~~~~~p~l~g~~~~ 80 (125)
T d1jpma2 1 MKIIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSIESAIHHVLKPALLGKSLA 80 (125)
T ss_dssp CBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEECCBTTTTCBCHHHHHHHHHHTHHHHHTTCBGG
T ss_pred CEEEEEEEEEEEeeccCCeEccCeEEEEEEEEEEEEEECCCCEEEEEecccccccccccchhHHHHHHHHHhhhcccCcc
Confidence 899999999999999999999999999999999999999999999999998888875544 3334444 78999999999
Q ss_pred CHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCC
Q 014285 143 TLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189 (427)
Q Consensus 143 ~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg 189 (427)
+.+.+++.+...++++ +.+++|||||+||++||..|+|||+||||
T Consensus 81 ~~~~~~~~l~~~~~~~--~~a~aaid~AlwDl~~K~~g~pl~~llGG 125 (125)
T d1jpma2 81 GYEAILHDIQHLLTGN--MSAKAAVEMALYDGWAQMCGLPLYQMLGG 125 (125)
T ss_dssp GHHHHHHHHHHSSSSC--HHHHHHHHHHHHHHHHHHTTSBHHHHTTC
T ss_pred cHHHHHHHhhhhccCc--cHHHHHHHHHHHHHHHHHcCCCHHHHcCc
Confidence 9999999998877765 46899999999999999999999999997
|
| >d1nu5a2 d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Probab=99.93 E-value=2.8e-25 Score=187.71 Aligned_cols=122 Identities=21% Similarity=0.360 Sum_probs=107.6
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCC--CCCcchHHHHH-HHHH-HhhHhcCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVP--LVTGDQTKALV-KVRE-ACQFLRQSP 140 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~--~~s~~~~~~~~-~~~~-~~~~l~g~~ 140 (427)
|||++|+++.+++||++||.+|.++..+++.++|+|+| +|++|||||.+.+ .++++..+... .+++ +.|.|.|++
T Consensus 1 MKI~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~~V~i~~-dG~~G~GE~~~~~~~~~~~~~~~~~~~~i~~~~~p~l~g~~ 79 (126)
T d1nu5a2 1 MKIEAISTTIVDVPTRRPLQMSFTTVHKQSYVIVQVKA-GGLVGIGEGGSVGGPTWGSESAETIKVIIDNYLAPLLVGKD 79 (126)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEE-TTEEEEEEECCSTTTTTSSCCHHHHHHHHHHTHHHHHTTSB
T ss_pred CEEEEEEEEEEecccCCCeEecceEEEeeeEEEEEEEc-CCeEEEeeccccCCCccccccHHHHHHHHHHHhhhhhhhcC
Confidence 89999999999999999999999999999999999998 5999999999864 35555555433 3444 789999999
Q ss_pred CCCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCC
Q 014285 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189 (427)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg 189 (427)
+.+++.+++.+...+.|+ +.|++||||||||+.||..|+|||+||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~--~~A~aaid~AlwDl~~K~~~~pl~~llGG 126 (126)
T d1nu5a2 80 ASNLSQARVLMDRAVTGN--LSAKAAIDIALHDLKARALNLSIADLIGG 126 (126)
T ss_dssp TTCHHHHHHHHHHHCSSC--HHHHHHHHHHHHHHHHHHTTCBHHHHHTC
T ss_pred cccHHHHHHHhhhhhhcc--chHHHHHHHHHHHHHHHHcCCCHHHHcCC
Confidence 999999999998877776 56899999999999999999999999997
|
| >d2chra2 d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Probab=99.92 E-value=2.4e-25 Score=188.13 Aligned_cols=122 Identities=27% Similarity=0.432 Sum_probs=106.7
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCC--CCCcchHHHH-HHHHH-HhhHhcCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVP--LVTGDQTKAL-VKVRE-ACQFLRQSP 140 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~--~~s~~~~~~~-~~~~~-~~~~l~g~~ 140 (427)
|||++|+++++++||++||+++.++.+.++.++|+|+| ||.+|||||.+.+ .++++..+.. ..+++ +.|.|+|++
T Consensus 1 MkI~~ie~~~~~~Pl~~p~~~s~~~~~~~~~v~v~i~~-dG~~G~GE~~~~~~~~~~~~~~~~~~~~l~~~l~p~lig~~ 79 (126)
T d2chra2 1 MKIDAIEAVIVDVPTKRPIQMSITTVHQQSYVIVRVYS-EGLVGVGEGGSVGGPVWSAECAETIKIIVERYLAPHLLGTD 79 (126)
T ss_dssp CCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEB-TTBCCEEECCCSTTTTTSSCCHHHHHHHHHHHTHHHHTTSC
T ss_pred CEEEEEEEEEEeccccCceEeccceEeeeeEEEEEEEc-CCceEeEeecccCCCccccchHHHHHHHHHHHhcccccccc
Confidence 89999999999999999999999999999999999998 5999999998764 4555554433 33444 689999999
Q ss_pred CCCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCC
Q 014285 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189 (427)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg 189 (427)
+.+++.+++.+...+.|+ +.+++||||||||+.||..|+|||+||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~--~~A~aaid~AlwDl~~K~~~~pl~~llGG 126 (126)
T d2chra2 80 AFNVSGALQTMARAVTGN--ASAKAAVEMALLDLKARALGVSIAELLGG 126 (126)
T ss_dssp TTCHHHHHHHHHTTCSSC--HHHHHHHHHHHHHHHHHHTTCCHHHHTTC
T ss_pred cccHHHHHHHhhhccccc--hHHHHHHHHHHHHHHHHHcCCCHHHHcCc
Confidence 999999999998777776 46799999999999999999999999997
|
| >d2gdqa2 d.54.1.1 (A:4-118) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Probab=99.91 E-value=3e-24 Score=178.43 Aligned_cols=115 Identities=22% Similarity=0.228 Sum_probs=100.0
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCCCH
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTL 144 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~~~ 144 (427)
|||++|+++++++|+++||.++.++.+.++.++|+|+||+|++|||||.+.. ... .....+.+.|.+.|+++.+.
T Consensus 1 mKI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~v~i~~d~G~~G~Ge~~~~~---~~~--~~~i~~~l~~~l~g~~~~~~ 75 (115)
T d2gdqa2 1 VKIVRIETFPLFHRLEKPYGDANGFKRYRTCYLIRIITESGIDGWGECVDWL---PAL--HVGFTKRIIPFLLGKQAGSR 75 (115)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECSCH---HHH--HHHHHHTHHHHHTTSBTTCH
T ss_pred CEEEEEEEEEEeeecCCceEecCeEEEeeeEEEEEEEECCcceEEEecCCch---hhh--HHHHHHHHhhhhcccChhhH
Confidence 7999999999999999999999999999999999999999999999997531 111 11123447899999999999
Q ss_pred HHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCC
Q 014285 145 NFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189 (427)
Q Consensus 145 ~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg 189 (427)
+.+|+.+... + +.+++||||||||+.||..|+|||+||||
T Consensus 76 ~~~~~~~~~~---~--~~a~aaid~AlwDl~~K~~~~Pl~~lLGG 115 (115)
T d2gdqa2 76 LSLVRTIQKW---H--QRAASAVSMALTEIAAKAADCSVCELWGG 115 (115)
T ss_dssp HHHHHHHHHH---C--HHHHHHHHHHHHHHHHHHTTSBHHHHTTC
T ss_pred HHHHHHHHHh---h--hHHHHHHHHHHHHHHHHHhCCCHHHHcCC
Confidence 9999988753 2 46899999999999999999999999997
|
| >d1muca2 d.54.1.1 (A:4-130) Muconate-lactonizing enzyme (cis muconate cycloisomerase) {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Muconate-lactonizing enzyme (cis muconate cycloisomerase) species: Pseudomonas putida [TaxId: 303]
Probab=99.90 E-value=2e-23 Score=175.49 Aligned_cols=122 Identities=20% Similarity=0.362 Sum_probs=94.4
Q ss_pred eEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCC--CCcchHHH-HHHHHH-HhhHhcCCCC
Q 014285 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPL--VTGDQTKA-LVKVRE-ACQFLRQSPP 141 (427)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~--~s~~~~~~-~~~~~~-~~~~l~g~~~ 141 (427)
.|++|+++.+++|+++|+.++.++.+.++.++|+|+|++|++||||+.+.+. +..+..+. ...+.. +.+.+.+.++
T Consensus 2 ~I~~ie~~~~~~Pl~~p~~~s~~~~~~~~~~iV~i~td~G~~G~Ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (127)
T d1muca2 2 LIERIDAIIVDLPTIRPHKLAMHTMQQQTLVVLRVRCSDGVEGIGEATTIGGLAYGYESPEGIKANIDAHLAPALIGLAA 81 (127)
T ss_dssp BEEEEEEEEEEEEBCC---------CEEEEEEEEEEETTSCEEEEEEECSTTTTTSSCCHHHHHHHHHHTHHHHHTTSBT
T ss_pred EEeEEEEEEEeccccCceEccceeEeeeeEEEEEEEeCCCcEEEEEeeccccccccccchHHHHHHHHhhhcccccccch
Confidence 5899999999999999999999999999999999999999999999987543 33333322 222333 6788999999
Q ss_pred CCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCC
Q 014285 142 TTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189 (427)
Q Consensus 142 ~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg 189 (427)
.+...++..+.....++ +.+++||||||||+.||..|+|||+||||
T Consensus 82 ~~~~~~~~~~~~~~~~~--~~a~aaid~AlwDl~~K~~g~Pl~~lLGG 127 (127)
T d1muca2 82 DNINAAMLKLDKLAKGN--TFAKSGIESALLDAQGKRLGLPVSELLGG 127 (127)
T ss_dssp TCHHHHHHHHHHHCSSC--HHHHHHHHHHHHHHHHHHHTCBHHHHTTC
T ss_pred hhHHHHHHHhhhhcccc--hHHHHHHHHHHHHHHHHHcCCCHHHHcCC
Confidence 99999998888776554 56899999999999999999999999997
|
| >d1wufa2 d.54.1.1 (A:1001-1126) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Probab=99.90 E-value=5.6e-24 Score=179.71 Aligned_cols=122 Identities=21% Similarity=0.290 Sum_probs=103.9
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeec--CCCCCcchHH-HHHHHHH-HhhHhcCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAV--VPLVTGDQTK-ALVKVRE-ACQFLRQSP 140 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~--~~~~s~~~~~-~~~~~~~-~~~~l~g~~ 140 (427)
|||++++++.+++||+.||++|.++.+.++.++|+|+|++|++|||||.+ .+.|+++..+ ....+++ +.|.+.|++
T Consensus 1 Mki~~i~~~~~~lPl~~p~~~s~~~~~~~~~~iv~i~t~~G~~G~GE~~~~~~~~~~~e~~~~~~~~l~~~l~p~l~g~~ 80 (126)
T d1wufa2 1 MYFQKARLIHAELPLLAPFKTSYGELKSKDFYIIELINEEGIHGYGELEAFPLPDYTEETLSSAILIIKEQLLPLLAQRK 80 (126)
T ss_dssp EECCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECSSSCEEEEEECCCSSTTSSSCCHHHHHHHHHHTTHHHHHHCE
T ss_pred CEEEEEEEEEEeccccCCEECcCEEEEEEEEEEEEEEECCCcEEEEEEeecCccCCChhhhhhhhheeeecccchhcCCC
Confidence 89999999999999999999999999999999999999999999999975 4556665443 3334444 689999999
Q ss_pred CCCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCC
Q 014285 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189 (427)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg 189 (427)
+.+.+.+++.+.. +.|+ +.+++||||||||+.||..|+|||+|||.
T Consensus 81 ~~~~~~i~~~~~~-~~~~--~~A~aaid~AlwDl~~K~~~~pl~~lLGa 126 (126)
T d1wufa2 81 IRKPEEIQELFSW-IQGN--EMAKAAVELAVWDAFAKMEKRSLAKMIGA 126 (126)
T ss_dssp ESSTTHHHHHHTT-SCSC--HHHHHHHHHHHHHHHHHHTTSBHHHHTTC
T ss_pred chhHHHHHHHhhh-ccCc--hHHHHHHHHHHHHHHHHHcCCcHHHHhCc
Confidence 9998888876643 4555 45799999999999999999999999984
|
| >d1rvka2 d.54.1.1 (A:1-126) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.89 E-value=3.4e-23 Score=174.84 Aligned_cols=119 Identities=17% Similarity=0.159 Sum_probs=98.8
Q ss_pred eeEEEEEEEEEEeeccccccccc----eeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGL----SSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSP 140 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~----~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~ 140 (427)
|||++|+++.+++|+++|+..+. +..+..+.++|+|+|++|++||||+.+... + ...+ .+.+.|.|+|++
T Consensus 1 MkIt~v~~~~~~~pl~~~~~~a~~~~~g~~~~~~~v~V~v~td~G~~G~Ge~~~~~~-~---~~~i--~~~l~~~lig~~ 74 (126)
T d1rvka2 1 MIITDVEVRVFRTTTRRHSDSAGHAHPGPAHQVEQAMLTVRTEDGQEGHSFTAPEIV-R---PHVI--EKFVKKVLIGED 74 (126)
T ss_dssp CBEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEETTSCEEEEEECGGGG-C---HHHH--HHTHHHHHTTSB
T ss_pred CEEEEEEEEEEEeeCCCccccccccCCCCcceeEEEEEEEEECCCCEEEEEeCCHHH-H---HHHH--HHHHHHHHhhcC
Confidence 89999999999999999999874 346788999999999999999999975321 1 1111 134789999999
Q ss_pred CCCHHHHHHHHHHH-C--CCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCC
Q 014285 141 PTTLNFALDEIARI-L--PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189 (427)
Q Consensus 141 ~~~~~~~~~~l~~~-~--~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg 189 (427)
+.+.+.+|+.+... . .+...+.+++|||+||||+.||.+|+|||+||||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~A~aavdiAlwDl~~K~~g~Pl~~LLGG 126 (126)
T d1rvka2 75 HRDRERLWQDLAHWQRGSAAQLTDRTLAVVDCALWDLAGRSLGQPVYKLIGG 126 (126)
T ss_dssp TTCHHHHHHHHHHHHTTTTTCSCHHHHHHHHHHHHHHHHHHHTCBHHHHHCC
T ss_pred cchhhhhhhhhccccccCCcchhhHHHHHHHHHHHHHHHHHcCCCHHHHcCc
Confidence 99999999998764 2 1233467899999999999999999999999997
|
| >d2mnra2 d.54.1.1 (A:3-132) Mandelate racemase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Probab=99.89 E-value=1.4e-22 Score=171.16 Aligned_cols=124 Identities=22% Similarity=0.265 Sum_probs=99.4
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCCCH
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTL 144 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~~~ 144 (427)
|+|++|+++.+++|+++||.++.++.+.++.++|+|+|++|++||||+.+.+..+.. ......+.+.+.+.+.+ .+.
T Consensus 2 ~~I~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~~V~i~t~~G~~G~Ge~~~~~~~~~~--~~~~~~~~~~~~l~~~~-~~~ 78 (130)
T d2mnra2 2 VLITGLRTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFAYTPVALK--SLKQLLDDMAAMIVNEP-LAP 78 (130)
T ss_dssp CBEEEEEEEEEEECCSSCEEETTEEECSEEEEEEEEEETTSCEEEEEEECSSGGGHH--HHHHHHHHHHHHHTTSB-SCH
T ss_pred CEEEEEEEEEEEecccCCeeccceEEeeceEEEEEEEECCccceeeeeeecCcccch--hHHHHHHHHHHHhccCC-CCH
Confidence 899999999999999999999999999999999999999999999999876443321 12223355677777754 455
Q ss_pred HHHHHHHHHHCC--CC--hhhhHHHHHHHHHHHHHHhhCCCChhhhhCCCC
Q 014285 145 NFALDEIARILP--GS--EFASVRAGVEMALIDAVANSIDIPLWRLFGGAS 191 (427)
Q Consensus 145 ~~~~~~l~~~~~--g~--~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~~ 191 (427)
...++.+..... +. ....+++|||+||||+.||..|+|||+||||+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~a~aaid~AlwDl~~K~~~~Pl~~lLGG~~ 129 (130)
T d2mnra2 79 VSLEAMLAKRFCLAGYTGLIRMAAAGIDMAAWDALGKVHETPLVKLLGANA 129 (130)
T ss_dssp HHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHHHHHTTSBHHHHTTCCC
T ss_pred HHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHHHHHHhCCCHHHHhCCCC
Confidence 667777665421 21 345789999999999999999999999999974
|
| >d2gl5a2 d.54.1.1 (A:1-122) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Putative dehydratase protein STM2273 species: Salmonella typhimurium [TaxId: 90371]
Probab=99.89 E-value=6.3e-23 Score=172.16 Aligned_cols=117 Identities=19% Similarity=0.290 Sum_probs=95.6
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCCCH
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTL 144 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~~~ 144 (427)
|||++|+++.+++|++.|+..+ ++.++|+|+||+|++||||+.+.+... ........+.+.|.++|+++.++
T Consensus 1 MKI~~Ie~~~~~~p~~~~~~~~------~~~iiV~i~td~Gi~G~Ge~~~~~~~~--~~~~~~~~~~~~~~lig~~~~~~ 72 (122)
T d2gl5a2 1 LKITSIEVFDCELKKRDQTMSS------YNPVLIRVNTDSGLSGIGEVGLAYGAG--AKAGVGIIRDLAPLIVGEDPLNI 72 (122)
T ss_dssp CCEEEEEEEECCGGGTCGGGTT------CCCEEEEEEETTSCEEEEEESCSSSTT--HHHHHHHHHHHGGGTTTSCTTCH
T ss_pred CEEeEEEEEEEcCCCCCCcccc------ceeEEEEEEECCCCEEEEeeccccccc--hHHHHHHHHHHHhhhcccccchh
Confidence 8999999999999999887655 356899999999999999997653321 12223334678999999999999
Q ss_pred HHHHHHHHHHC-----CCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCC
Q 014285 145 NFALDEIARIL-----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189 (427)
Q Consensus 145 ~~~~~~l~~~~-----~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg 189 (427)
+.+|+.+.+.. .+....++++|||+||||+.||..|+|||+||||
T Consensus 73 e~~~~~l~~~~~~~~~~~~~~~~a~aaid~AlwDl~~K~~~~PL~~lLGG 122 (122)
T d2gl5a2 73 EKIWEFFFRKTFWGMGGGNVFYAGMSAIDIALWDIKGKYLGVPVYQLLGG 122 (122)
T ss_dssp HHHHHHHHHSSSGGGSCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTS
T ss_pred hHHHHHHhhhcccccccCCcccchHHHHHHHHHHHHHHHhCCCHHHHcCC
Confidence 99999987642 1223456899999999999999999999999997
|
| >d1wuea2 d.54.1.1 (A:1001-1126) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.89 E-value=1e-22 Score=171.09 Aligned_cols=121 Identities=16% Similarity=0.190 Sum_probs=100.0
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCC--CCCcchHHH-HHHHHH-HhhHhcCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVP--LVTGDQTKA-LVKVRE-ACQFLRQSP 140 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~--~~s~~~~~~-~~~~~~-~~~~l~g~~ 140 (427)
|||++|+++.+++|+++||.+|.++.+.++.++|+++|++|++||||+.+.+ .++++.... ...+.. +.+.+.+++
T Consensus 1 MKI~~ie~~~~~~pl~~p~~~s~~~~~~~~~~~v~i~t~~G~~G~GE~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 80 (126)
T d1wuea2 1 MNIQSIETYQVRLPLKTPFVTSYGRLEEKAFDLFVITDEQGNQGFGELVAFEQPDYVQETLVTERFIIQQHLIPLLLTEA 80 (126)
T ss_dssp CCEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECCCSSTTSSSCCHHHHHHHHHHTHHHHHTTSC
T ss_pred CEEeEEEEEEEeccccCCEEccCeEEEeeeEEEEEEEECCCcEEEEEEeccCccccchhhhhhhhhhhhccccccccccc
Confidence 8999999999999999999999999999999999999999999999998754 344433322 222233 567899999
Q ss_pred CCCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhC
Q 014285 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFG 188 (427)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llg 188 (427)
..+.+.+++.+.. ..++ +.+++||||||||+.||..|+|||+|||
T Consensus 81 ~~~~~~~~~~~~~-~~~~--~~a~aaid~AlwDl~ak~~~~pl~~lLG 125 (126)
T d1wuea2 81 IEQPQEVSTIFEE-VKGH--WMGKAALETAIWDLYAKRQQKSLTEFFG 125 (126)
T ss_dssp CCSTHHHHHHGGG-SCSC--HHHHHHHHHHHHHHHHHHTTSBGGGGSS
T ss_pred cccHHHHHHHHhh-ccCc--cHHHHHHHHHHHHHHHHHhCCCHHHHhC
Confidence 9988887776643 3344 4579999999999999999999999998
|
| >d1sjda2 d.54.1.1 (A:1-125) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Probab=99.87 E-value=3.2e-22 Score=167.66 Aligned_cols=121 Identities=21% Similarity=0.320 Sum_probs=101.4
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecC--CCCCcchHHHHH-HHHH-HhhHhcCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTKALV-KVRE-ACQFLRQSP 140 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~--~~~s~~~~~~~~-~~~~-~~~~l~g~~ 140 (427)
|||++|+++.+++|+++||.++.++.+.++.++|+++|++| +||||+.+. +.++++..+... .+.. +.+.+.+.+
T Consensus 1 MKI~~i~~~~i~~Pl~~p~~~s~~~~~~~~~~iv~l~~~~g-~G~Ge~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 79 (125)
T d1sjda2 1 MKLSGVELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAG-EGWGECVTMAGPLYSSEYNDGAEHVLRHYLIPALLAAE 79 (125)
T ss_dssp CCCCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECSSC-EEEEECCCBSSSSSSSCBHHHHHHHHHHTHHHHHHHSS
T ss_pred CEEEEEEEEEEeccccCCEEccCceEeeeeEEEEEEEecCc-eEEEEEEecCccccchhhhhhhhhhhhhccchhhcCCC
Confidence 89999999999999999999999999999999999999887 799999875 446665544333 2333 678888999
Q ss_pred CCCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCC
Q 014285 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189 (427)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg 189 (427)
+.+.+.+++.+.. ..++ +.+++||||||||+.||..|+|||+|||.
T Consensus 80 ~~~~~~~~~~~~~-~~~~--~~a~aaid~AlwDl~ak~~~~Pl~~lLGa 125 (125)
T d1sjda2 80 DITAAKVTPLLAK-FKGH--RMAKGALEMAVLDAELRAHERSFAAELGS 125 (125)
T ss_dssp SCCHHHHHHHHTT-SCSC--HHHHHHHHHHHHHHHHHHTTCBHHHHHTC
T ss_pred ccCHHHHHHHHHH-ccCC--cHHHHHHHHHHHHHHHHHcCCcHHHHhCc
Confidence 9999988887754 3444 56899999999999999999999999984
|
| >d1r0ma2 d.54.1.1 (A:6-132) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Probab=99.86 E-value=7.1e-22 Score=166.31 Aligned_cols=121 Identities=20% Similarity=0.172 Sum_probs=90.3
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCC--CCcchHH-HHHHHHH-HhhHhcCCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPL--VTGDQTK-ALVKVRE-ACQFLRQSP 140 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~--~s~~~~~-~~~~~~~-~~~~l~g~~ 140 (427)
|||++|+++.+++||+.||.+|.++.+.++.++|++++ +|.+||||+.+.+. ++++..+ ....+.. +.|.+.|++
T Consensus 3 ~kI~~ie~~~~~~Pl~~p~~~s~~~~~~~~~vvv~~~~-~G~~G~Ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (127)
T d1r0ma2 3 FKIEAAEIVVARLPLKFRFETSFGVQTHKVVPLLILHG-EGVQGVAEGTMEARPMYREETIAGALDLLRGTFLPAILGQT 81 (127)
T ss_dssp EECCEEEEEEEEEEBC----------CEEEEEEEEEEE-TTEEEEEECCCBSSSSSSSCBHHHHHHHHHHTHHHHHTTCE
T ss_pred ceEEEEEEEEEeecccCCEECcCcEEEeeeEEEEEEEc-CCcEEEEEEEcCCCcccchhhhhhhhhhhhhhcccccccCC
Confidence 89999999999999999999999999999999999997 59999999987643 4543333 2222333 678999999
Q ss_pred CCCHHHHHHHHHHHCCCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCC
Q 014285 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189 (427)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg 189 (427)
+.+++.++..+.. +.++ +.+++||||||||+.||..|+|||+||||
T Consensus 82 ~~~~~~~~~~~~~-~~~~--~~a~aaid~AlwDl~aK~~~~pl~~llGG 127 (127)
T d1r0ma2 82 FANPEAVSDALGS-YRGN--RMARAMVEMAAWDLWARTLGVPLGTLLGG 127 (127)
T ss_dssp ESSHHHHHHTTTT-SCSC--HHHHHHHHHHHHHHHHHHHTCBHHHHHTC
T ss_pred hhhHHHHhhhhcc-cCCc--hHHHHHHHHHHHHHHHHHhCCcHHHHcCC
Confidence 9999888776543 3333 56899999999999999999999999997
|
| >d1bqga2 d.54.1.1 (A:12-143) D-glucarate dehydratase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: D-glucarate dehydratase species: Pseudomonas putida [TaxId: 303]
Probab=99.85 E-value=3e-21 Score=164.02 Aligned_cols=117 Identities=18% Similarity=0.142 Sum_probs=98.9
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCCCH
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTL 144 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~~~ 144 (427)
-|||+|++++++.|++.++..+....+....++|||+|++|++||||+.+... ....++.+.+.++|+++.++
T Consensus 3 p~It~ve~~~v~~~~~~~~~~~g~~~~~~~~~lV~i~td~G~~G~Ge~~~~~~-------~~~~~~~~~~~~ig~~~~~~ 75 (132)
T d1bqga2 3 PVITDLKVVPVAGHDSMLLNLSGAHGPLFTRNILILTDSSGHVGVGEVPGGEG-------IRKTLEDARHLLINQSIGNY 75 (132)
T ss_dssp CBEEEEEEEEEEEECCCEEETTEECCSEEEEEEEEEEETTSCEEEEEEECCHH-------HHHHHHTTHHHHBTCBGGGH
T ss_pred CEEEEEEEEEEeccCcccccCCCCCCCcceEEEEEEEECCCcEEEEEeCCcHh-------HHHHHHHhhhhhcCcChHHH
Confidence 48999999999999999999998888888899999999999999999975321 12234567899999999999
Q ss_pred HHHHHHHHHHCCC-------------ChhhhHHHHHHHHHHHHHHhhCCCChhhhhC
Q 014285 145 NFALDEIARILPG-------------SEFASVRAGVEMALIDAVANSIDIPLWRLFG 188 (427)
Q Consensus 145 ~~~~~~l~~~~~g-------------~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llg 188 (427)
+.+++.|.+.... .....+++||||||||++||..|+|||+|||
T Consensus 76 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~aaid~AlwDl~gK~~g~Pl~~LLG 132 (132)
T d1bqga2 76 QSLLNKVRNAFADRDVGGRGLQTFDLRIAVHAVTAVESALLDLLGQHLQVPVAALLG 132 (132)
T ss_dssp HHHHHHHHHHTCC------------CHHHHHHHHHHHHHHHHHHHHHHTCBGGGGST
T ss_pred HHHHHHHHHHhcccCcccccccccccchHHHHHHHHHHHHHHHHHHHcCCcHHHHcC
Confidence 9999999765321 1235789999999999999999999999997
|
| >d1jdfa2 d.54.1.1 (A:5-137) D-glucarate dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: D-glucarate dehydratase species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=1.1e-20 Score=160.71 Aligned_cols=117 Identities=14% Similarity=0.118 Sum_probs=97.6
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCCCH
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTL 144 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~~~ 144 (427)
.+||+|++++++.|.+.++..+....+....++|+|+|++|++||||+.+.+. ....++.+.+.+.|+++.++
T Consensus 4 p~It~i~~~~v~~~~~~~~~~~~~~~~~~~~~iV~l~t~~Gi~G~Ge~~~~~~-------~~~~~~~~~~~l~g~~~~~~ 76 (133)
T d1jdfa2 4 PVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEK-------IRKTLEDAIPLVVGKTLGEY 76 (133)
T ss_dssp CBEEEEEEEEEEEECCCBEETTEECCSEEEEEEEEEEETTSCEEEEEEECCHH-------HHHHHHHHHHHHTTCBGGGH
T ss_pred CeEEEEEEEEecccCcccccCCCCcCCccceEEEEEEECCCCEEEEEecCcHH-------HHHHHHhhhhhhcCCChhhH
Confidence 68999999999999999998887766777789999999999999999975321 12234567899999999999
Q ss_pred HHHHHHHHHHCC-------------CChhhhHHHHHHHHHHHHHHhhCCCChhhhhC
Q 014285 145 NFALDEIARILP-------------GSEFASVRAGVEMALIDAVANSIDIPLWRLFG 188 (427)
Q Consensus 145 ~~~~~~l~~~~~-------------g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llg 188 (427)
+.+++.+..... ....+.+++||||||||+.||.+|+|||+|||
T Consensus 77 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~aaid~AlwDl~gK~~g~Pl~~LLG 133 (133)
T d1jdfa2 77 KNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLG 133 (133)
T ss_dssp HHHHHHHHHHTGGGGTTCSCSSSSCCCCHHHHHHHHHHHHHHHHHHHHTSBGGGGST
T ss_pred HHHHHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHcC
Confidence 999998875421 11346789999999999999999999999997
|
| >d1tzza2 d.54.1.1 (A:1006-1145) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.81 E-value=2.6e-20 Score=159.77 Aligned_cols=119 Identities=20% Similarity=0.258 Sum_probs=82.2
Q ss_pred eeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcC-----CceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCC
Q 014285 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSN-----GCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQS 139 (427)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~-----G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~ 139 (427)
|||+++ +.+++|++.|++++.+++++++.++|+|+||+ |.+||||+.+.+.... . .....+.|.+.|+
T Consensus 1 mkIvdi--~~~~vPl~~p~~~s~~~~~~~~~~lV~i~Td~G~~G~G~~G~g~~~~~~~~~~---~--~~~~~~~~~lig~ 73 (140)
T d1tzza2 1 VRIVDV--REITKPISSPIRNAYIDFTKMTTSLVAVVTDVVREGKRVVGYGFNSNGRYGQG---G--LIRERFASRILEA 73 (140)
T ss_dssp CCEEEE--EEEEEECCC---------CCCEEEEEEEEEEEECSSSEEEEEEECCTTSCCCH---H--HHHHTHHHHHHTS
T ss_pred CeEEEE--EEEEecCCCCcccccceeeceEEEEEEEEEeecccCcceEeeEecCCchhHHH---H--HHHHHHHHHHhcc
Confidence 788766 46889999999999999999999999999984 5678998876543221 1 1123467777777
Q ss_pred CC----------CCHHHHHHHHHHH-CCC--ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCCC
Q 014285 140 PP----------TTLNFALDEIARI-LPG--SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA 190 (427)
Q Consensus 140 ~~----------~~~~~~~~~l~~~-~~g--~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg~ 190 (427)
++ .+.+.+|+.|.+. ..+ .....|++||||||||+.||.+|+|||+||||.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~aaiDiAlWDl~gK~~g~Pl~~LLgg~ 137 (140)
T d1tzza2 74 DPKKLLNEAGDNLDPDKVWAAMMINEKPGGHGERSVAVGTIDMAVWDAVAKIAGKPLFRLLAER 137 (140)
T ss_dssp CGGGSBCTTSSSBCHHHHHHHHTTTCCSCCCSHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHH
T ss_pred cHhhHhhhcccccChHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHHcCCcHHHHhccc
Confidence 65 4567788888653 222 233568999999999999999999999999975
|
| >d1yeya2 d.54.1.1 (A:2-140) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Probab=99.77 E-value=1.7e-19 Score=154.49 Aligned_cols=123 Identities=15% Similarity=0.129 Sum_probs=91.8
Q ss_pred eEEEEEEEEEEeecccccccc--ceeEEeeeEEEEEEEEcCCceEEEEeecCCCCCcchHHHHHHHHHHhhHhcCCCCCC
Q 014285 66 DVQRAEGRELNVALSAPLSLG--LSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTT 143 (427)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~a--~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~~~~~l~g~~~~~ 143 (427)
+|++|+++.+++|++++...+ .+..+....++|+|+|++|..|+||+...+...+. .......+.+.|.++|+++.+
T Consensus 2 tI~~v~~~~~r~P~~~~~~~s~a~~~~~~~~~~~V~i~td~g~~g~G~~~~~~~~~~~-~~~~~~~~~l~p~liG~~~~~ 80 (139)
T d1yeya2 2 TIIALETHDVRFPTSRELDGSDAMNPDPDYSAAYVVLRTDGAEDLAGYGLVFTIGRGN-DVQTAAVAALAEHVVGLSVDK 80 (139)
T ss_dssp BEEEEEEEEEECCGGGCC------CCSCCCEEEEEEEEESSCTTCEEEEEEEECSTTH-HHHHHHHHTTHHHHTTCBHHH
T ss_pred eEEEEEEEEEEccCccCCCCcCCcccCCCcceeEEEEEECCCCcEEEEEEEecCCChH-HHHHHHHHHHHHHhhCCCccc
Confidence 599999999999999998544 34445567899999999988888887654321121 112223355899999999999
Q ss_pred HHHHHHHHHHHCC---------C--ChhhhHHHHHHHHHHHHHHhhCCCChhhhhCC
Q 014285 144 LNFALDEIARILP---------G--SEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189 (427)
Q Consensus 144 ~~~~~~~l~~~~~---------g--~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg 189 (427)
++.+|+++++.+. + ....++++|||+||||++||.+|+|||+|||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~saIDiALWDl~gK~~~~Pl~~LL~~ 137 (139)
T d1yeya2 81 VIADLGAFARRLTNDSQLRWLGPEKGVMHMAIGAVINAAWDLAARAANKPLWRFIAE 137 (139)
T ss_dssp HHHCHHHHHHHHHTCHHHHTTCSSSHHHHHHHHHHHHHHHHHHHHHTTSBHHHHHHT
T ss_pred HHHHHHHHHHHhcccccccccCCcchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhhh
Confidence 9988888865321 1 12346899999999999999999999999986
|
| >d2akza1 c.1.11.1 (A:140-433) Enolase {Human (Homo sapiens), gamma isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Human (Homo sapiens), gamma isoform [TaxId: 9606]
Probab=99.22 E-value=4.5e-11 Score=112.72 Aligned_cols=117 Identities=23% Similarity=0.427 Sum_probs=100.3
Q ss_pred CCHHHHHHHHHHh-hhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCC
Q 014285 258 YTSEEAVEVLGKL-NDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKL 335 (427)
Q Consensus 258 ~s~~~A~~~l~~L-~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~ 335 (427)
.+.+|-++++..| ++|.+ .+||+|+..+||+++++|++ +.++.|..|. .+++...+++.++.++++.+.+||
T Consensus 131 ~t~delid~y~~l~~kYPI--isIEDP~~E~D~~gw~~lt~----~lg~~ivGDDl~vTn~~rl~kgi~~~aanailIK~ 204 (294)
T d2akza1 131 ITGDQLGALYQDFVRDYPV--VSIEDPFDQDDWAAWSKFTA----NVGIQIVGDDLTVTNPKRIERAVEEKACNCLLLKV 204 (294)
T ss_dssp BCHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHHHHHH----TCSSEEEESTTTTTCHHHHHHHHHTTCCSEEEECH
T ss_pred ecHHHHHHHHHHHhcccCe--EEEeCCCcccchhhHHHHHH----hcCcEEEccccccccHHHHHHHHhcCcCccceecc
Confidence 5788988887765 67886 59999999999999999997 5678888877 667888899999999999999999
Q ss_pred CCcc-HHHHHHHHHHHHHcCCcEEEcccC-chhHHHHHHHHHHhhcCCc
Q 014285 336 AKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAAGLGCI 382 (427)
Q Consensus 336 ~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hlaaal~~~ 382 (427)
+++| ++++++.+++|+++|+.+++++.. |+ .-...+|||.|++..
T Consensus 205 NQiGTltEt~ea~~la~~~g~~~ivShRsGET--eD~~iaDLAVg~~a~ 251 (294)
T d2akza1 205 NQIGSVTEAIQACKLAQENGWGVMVSHRSGET--EDTFIADLVVGLCTG 251 (294)
T ss_dssp HHHCCHHHHHHHHHHHHHTTCEEEEECCSBCC--SCCHHHHHHHHHTCS
T ss_pred ccchhHHHHHHHHHHHHHcCCcEEeeCCCCCc--CcchHhHHHHhcCCC
Confidence 9999 999999999999999999998765 33 223578999888764
|
| >d2fyma1 c.1.11.1 (A:140-431) Enolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=1.2e-10 Score=109.59 Aligned_cols=120 Identities=24% Similarity=0.361 Sum_probs=100.8
Q ss_pred CCCHHHHHHHHHHh-hhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecC-CCCCHHHHHHHHHcCCCcEEEeC
Q 014285 257 GYTSEEAVEVLGKL-NDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLASVVNIK 334 (427)
Q Consensus 257 ~~s~~~A~~~l~~L-~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk 334 (427)
.+|.+|-++++..| ++|.+ .+||+|+..+||+++++|++.+ ...+-|.+|. .+++...+++.++..+++.+.+|
T Consensus 127 ~~t~~eli~~y~~l~~~yPI--isIEDP~~edD~~gw~~lt~~~--g~~~~ivGDDL~~Tn~~rl~~gi~~~~~nailiK 202 (292)
T d2fyma1 127 AFTSEEFTHFLEELTKQYPI--VSIEDGLDESDWDGFAYQTKVL--GDKIQLVGDDLFVTNTKILKEGIEKGIANSILIK 202 (292)
T ss_dssp EECHHHHHHHHHHHHHHSCE--EEEESCSCTTCHHHHHHHHHHH--TTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEEC
T ss_pred cccHHHHHHHHHHHHhcCce--EEEeCCcccccHHHHHHHHHhc--CCcEEEeCCchhccChHHHHhhhhcCCccceeec
Confidence 36899999888776 67875 5999999999999999999743 2357788887 55677788999999999999999
Q ss_pred CCCcc-HHHHHHHHHHHHHcCCcEEEcccC-chhHHHHHHHHHHhhcCCc
Q 014285 335 LAKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAAGLGCI 382 (427)
Q Consensus 335 ~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hlaaal~~~ 382 (427)
|+.+| +|++++.+++|+++|..+++++.. |+ .-...+|||.++++.
T Consensus 203 ~NQiGTvTet~ea~~la~~~g~~~ivShRSGET--eD~~iaDLAVg~ga~ 250 (292)
T d2fyma1 203 FNQIGSLTETLAAIKMAKDAGYTAVISHRSGET--EDATIADLAVGTAAG 250 (292)
T ss_dssp GGGTCSHHHHHHHHHHHHHTTCEEEEECCSSCC--SCCHHHHHHHHTTCE
T ss_pred hhhhhHHHHHHHHHHHHHHcCCeEeecCCCCCc--ccchHHHHHHHhCCC
Confidence 99999 999999999999999999998765 33 123688999998774
|
| >d2al1a1 c.1.11.1 (A:142-436) Enolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.19 E-value=9.1e-11 Score=110.54 Aligned_cols=118 Identities=21% Similarity=0.369 Sum_probs=100.5
Q ss_pred CCCHHHHHHHHHHh-hhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecC-CCCCHHHHHHHHHcCCCcEEEeC
Q 014285 257 GYTSEEAVEVLGKL-NDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLASVVNIK 334 (427)
Q Consensus 257 ~~s~~~A~~~l~~L-~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk 334 (427)
..|.+|-++++..| ++|.+ .+||+|++.+||+++++|++ ..+.-|..|. .+++...+++.++.++++.+.+|
T Consensus 131 ~~s~~elid~y~~li~~YPI--isIEDp~~e~D~~gw~~lt~----~~g~~iVGDDl~~Tn~~rl~~~i~~~~~nailiK 204 (295)
T d2al1a1 131 WLTGPQLADLYHSLMKRYPI--VSIEDPFAEDDWEAWSHFFK----TAGIQIVADDLTVTNPKRIATAIEKKAADALLLK 204 (295)
T ss_dssp CBCHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHHHHHT----TCCSEEEESTTTTTCHHHHHHHHHTTCCSEEEEC
T ss_pred ccchHHHHHHHHHHHHhCCE--EEecCCcCccchHHHHHHhh----ccCceeecchhhcccchhhhcchhhhcccceeec
Confidence 46788988887765 67876 59999999999999999986 5677888887 66778889999999999999999
Q ss_pred CCCcc-HHHHHHHHHHHHHcCCcEEEcccC-chhHHHHHHHHHHhhcCCc
Q 014285 335 LAKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAAGLGCI 382 (427)
Q Consensus 335 ~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hlaaal~~~ 382 (427)
|+.+| +|++++.+++|+++|+.+++++.. |+ .-...+|||.++++.
T Consensus 205 ~NQiGTvtEt~ea~~la~~~g~~~ivShRSGET--eD~~iaDLAVg~~a~ 252 (295)
T d2al1a1 205 VNQIGTLSESIKAAQDSFAAGWGVMVSHRSGET--EDTFIADLVVGLRTG 252 (295)
T ss_dssp HHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCC--SCCHHHHHHHHTTCS
T ss_pred ccchhhHHHHHHHHHHHHhcCCeeecccCCCCc--CcchhhhhhHhcCCC
Confidence 99999 999999999999999999998765 33 223678999998764
|
| >d2ptza1 c.1.11.1 (A:139-429) Enolase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.18 E-value=8.9e-11 Score=110.62 Aligned_cols=120 Identities=19% Similarity=0.330 Sum_probs=100.9
Q ss_pred CCCHHHHHHHHHHh-hhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecC-CCCCHHHHHHHHHcCCCcEEEeC
Q 014285 257 GYTSEEAVEVLGKL-NDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLASVVNIK 334 (427)
Q Consensus 257 ~~s~~~A~~~l~~L-~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk 334 (427)
..|.+|-++++..| ++|.+ .+||+|+..+||+++++|++.+ ...+-|.+|. -+++...+++.++.++++.+.+|
T Consensus 130 ~ls~~elid~y~~l~~~YPI--isIEDp~~e~D~~gw~~lt~~~--g~k~~iVGDDL~vTn~~rl~~gi~~~a~NaiLIK 205 (291)
T d2ptza1 130 WVTAEQLRETYCKWAHDYPI--VSIEDPYDQDDFAGFAGITEAL--KGKTQIVGDDLTVTNTERIKMAIEKKACNSLLLK 205 (291)
T ss_dssp EECHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHHHHHHHT--TTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEEC
T ss_pred hhhHHHHHHHHHHHhhccce--eEecCCccccchhHHHHhhhcc--CceEEEecCcccccchHHHhhccccCCccceEec
Confidence 46889998888776 67875 5999999999999999999743 2347788887 66778889999999999999999
Q ss_pred CCCcc-HHHHHHHHHHHHHcCCcEEEcccC-chhHHHHHHHHHHhhcCCc
Q 014285 335 LAKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAAGLGCI 382 (427)
Q Consensus 335 ~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hlaaal~~~ 382 (427)
|+++| ++++++.+++|+++|..+++++.. |+ .-...+|||.++++.
T Consensus 206 ~NQiGTvtEt~ea~~la~~~g~~~iiShRSGET--eD~~iaDLAVg~~a~ 253 (291)
T d2ptza1 206 INQIGTISEAIASSKLCMENGWSVMVSHRSGET--EDTYIADLVVALGSG 253 (291)
T ss_dssp HHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCC--SCCHHHHHHHHHTCS
T ss_pred chhhhhHHHHHHHHHHHHHcCeeEEeeCCCCCc--CcchHHHHHHHhCCC
Confidence 99999 999999999999999999998754 33 223678999998764
|
| >d1w6ta1 c.1.11.1 (A:138-433) Enolase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.18 E-value=1.1e-10 Score=109.98 Aligned_cols=118 Identities=20% Similarity=0.352 Sum_probs=99.8
Q ss_pred CHHHHHHHHHHh-hhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecC-CCCCHHHHHHHHHcCCCcEEEeCCC
Q 014285 259 TSEEAVEVLGKL-NDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLA 336 (427)
Q Consensus 259 s~~~A~~~l~~L-~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE-~~~~~~~~~~ll~~~a~~~i~lk~~ 336 (427)
|.+|.++++..| ++|.+ .+||+|+..+||+++++|++.+ ...+-|.+|. .+++...+++.++.++++.+.+||+
T Consensus 133 s~~elid~y~~l~~~YPI--isIEDP~~e~D~~gw~~lt~~l--g~~~~iVGDDL~vTn~~~l~~gI~~~~~nailiK~N 208 (296)
T d1w6ta1 133 TSAEQIDYLEELVNKYPI--ITIEDGMDENDWDGWKALTERL--GKKVQLVGDDFFVTNTDYLARGIQEGAANSILIKVN 208 (296)
T ss_dssp CHHHHHHHHHHHHHHSCE--EEEESCSCTTCHHHHHHHHHHH--TTTSEEEESTTTTTCHHHHHHHHHHTCCSEEEECHH
T ss_pred CHHHHHHHHHHHHhcCCe--EEEecCcccccHHHHHHHHHHh--CCceEEEcCcccccChhHHHhhhhhcccccceeccc
Confidence 788888888776 67875 5999999999999999998743 2467788887 6677788899999999999999999
Q ss_pred Ccc-HHHHHHHHHHHHHcCCcEEEcccC-chhHHHHHHHHHHhhcCCc
Q 014285 337 KFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAAGLGCI 382 (427)
Q Consensus 337 ~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hlaaal~~~ 382 (427)
.+| +|++++.+++|+++|+.+++++.. |+ .-...+|||.++++.
T Consensus 209 QiGTvtet~e~~~~a~~~g~~~ivShRSGET--eD~~iadLAVg~~a~ 254 (296)
T d1w6ta1 209 QIGTLTETFEAIEMAKEAGYTAVVSHRSGET--EDSTIADIAVATNAG 254 (296)
T ss_dssp HHCSHHHHHHHHHHHHHTTCEEEEECCSSCC--SCCHHHHHHHHTTCC
T ss_pred hhHHHHHHHHHHHHHHHCCceEEeecCCCCC--ccchhHHHHHHcCCC
Confidence 999 999999999999999999998765 33 223688999998764
|
| >d1w6ta2 d.54.1.1 (A:1-137) Enolase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.59 E-value=4.5e-07 Score=75.21 Aligned_cols=112 Identities=21% Similarity=0.229 Sum_probs=81.0
Q ss_pred eEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCC----------------CCc-chHHHHHH
Q 014285 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPL----------------VTG-DQTKALVK 128 (427)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~----------------~s~-~~~~~~~~ 128 (427)
+|++|..+.+ ..++| ++++-|+|.+++|..|.+-++..-. |.+ ....++..
T Consensus 3 ~I~~v~~r~I--------lDSRG----~PTvevev~~~~g~~gra~~PSGAStG~~Ea~elrD~~~~~~~Gkgv~~Av~~ 70 (137)
T d1w6ta2 3 IITDVYAREV--------LDSRG----NPTLEVEVYTESGAFGRGMVPSGASTGEHEAVELRDGDKSRYGGLGTQKAVDN 70 (137)
T ss_dssp BEEEEEEEEE--------ECTTS----CEEEEEEEEETTCCEEEEECCCC---CCSSCCCCCCCCTTSGGGTCCHHHHHH
T ss_pred ceeEEEEEEE--------EcCCC----CEEEEEEEEECCCccceeecCcCCCcccccceeccCCccccccCCcHHHHHHH
Confidence 4777766542 22322 6789999999999999888764210 111 12334555
Q ss_pred HHH-HhhHhcCCCCCCHHHHHHHHHHHC----CCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCC
Q 014285 129 VRE-ACQFLRQSPPTTLNFALDEIARIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189 (427)
Q Consensus 129 ~~~-~~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg 189 (427)
++. +.|.|.|+++.+++.+.+.|.+.. ....-.++..|+.+|++.+.|+..++|||+++||
T Consensus 71 in~~i~~~L~G~d~~dq~~iD~~lielDgT~nks~lGaNailAvSlA~akAaA~~~~~pLy~yigg 136 (137)
T d1w6ta2 71 VNNIIAEAIIGYDVRDQQAIDRAMIALDGTPNKGKLGANAILGVSIAVARAAADYLEIPLYSYLGG 136 (137)
T ss_dssp HHHTHHHHHTTSBTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTSCHHHHHHC
T ss_pred HHHHhHHHHcCCccccHHHHHHHHHHhcCcccccccchhHHHHHHHHHHHHHHHHcCCcHHHhhcC
Confidence 544 689999999999999888876541 1123367889999999999999999999999997
|
| >d2ptza2 d.54.1.1 (A:0-138) Enolase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Trypanosoma brucei [TaxId: 5691]
Probab=98.37 E-value=1.5e-06 Score=72.31 Aligned_cols=112 Identities=21% Similarity=0.195 Sum_probs=78.4
Q ss_pred eeeEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCCCC-----------------c-chHHH
Q 014285 64 WVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVT-----------------G-DQTKA 125 (427)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~~s-----------------~-~~~~~ 125 (427)
+|+|++|..+.+ ..++| .+++-|+|.+++|.. .+- .|...-+ + ....+
T Consensus 1 ~M~I~~i~~r~I--------lDSRG----~PTvevev~~~~g~~-ra~-~PsGaStG~~Ea~elrd~~~~~~~Gkgv~~A 66 (139)
T d2ptza2 1 HMTIQKVHGREV--------LDSRG----NPTVEVEVTTEKGVF-RSA-VPSGASTGVYEACELRDGDKKRYVGKGCLQA 66 (139)
T ss_dssp TTSCCEEEEEEE--------ECTTS----CEEEEEEEEETTEEE-EEE-CCBCSSCCTTSCCCCCCCCTTTGGGTCCHHH
T ss_pred CCeEEEEEEEEE--------EcCCC----CeEEEEEEEECCCce-eEe-ccccccccchhhhhcCCCcccccccchHHHH
Confidence 488888877642 22332 678999999998753 333 3432111 1 11234
Q ss_pred HHHHH-HHhhHhcCCCCCCHHHHHHHHHHHCC----CChhhhHHHHHHHHHHHHHHhhCCCChhhhhCC
Q 014285 126 LVKVR-EACQFLRQSPPTTLNFALDEIARILP----GSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189 (427)
Q Consensus 126 ~~~~~-~~~~~l~g~~~~~~~~~~~~l~~~~~----g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg 189 (427)
+..++ .+.|.|.|+++.+.+.+++.|.+... ....+++..|+.+|++.+.|+..++|||++|++
T Consensus 67 v~nin~~I~~~L~g~~~~dQ~~iD~~li~lDgt~nks~lGaNailAvS~A~akA~A~~~~~pLy~yi~~ 135 (139)
T d2ptza2 67 VKNVNEVIGPALIGRDELKQEELDTLMLRLDGTPNKGKLGANAILGCSMAISKAAAAAKGVPLYRYLAS 135 (139)
T ss_dssp HHHHHHTHHHHHTTCCTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHhhhccchhhcccchhhHHHHHHHHHHHhCCcchhhhhhHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 44444 37899999999999999988876421 123367899999999999999999999999864
|
| >d2fyma2 d.54.1.1 (A:1-139) Enolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Escherichia coli [TaxId: 562]
Probab=98.33 E-value=4.2e-06 Score=69.55 Aligned_cols=112 Identities=21% Similarity=0.156 Sum_probs=80.3
Q ss_pred eEEEEEEEEEEeeccccccccceeEEeeeEEEEEEEEcCCceEEEEeecCCC----------------CCc-chHHHHHH
Q 014285 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPL----------------VTG-DQTKALVK 128 (427)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~v~t~~G~~G~GE~~~~~~----------------~s~-~~~~~~~~ 128 (427)
||++|..+.+ ..++| ++++-|+|.+++|.+|.+-++..-. |.+ ....++..
T Consensus 2 kI~~v~~r~I--------lDSRG----~PTvevev~~~~g~~g~a~~PsGaStG~~Ea~elrD~~~~~~~Gkgv~~av~~ 69 (139)
T d2fyma2 2 KIVKIIGREI--------IDSRG----NPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAA 69 (139)
T ss_dssp BEEEEEEEEE--------ECTTS----CEEEEEEEEETTSCEEEEECCCCCSSCSSSCCCCCCCCTTSGGGTCCHHHHHH
T ss_pred eeEEEEEEEE--------EcCCC----CeEEEEEEEECCCCEeEEECCcccCccccccccccCCChhhhcccccchhhHH
Confidence 5777766542 22322 6789999999999999998864210 111 12234444
Q ss_pred HH-HHhhHhcCCCCCCHHHHHHHHHHHC----CCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCC
Q 014285 129 VR-EACQFLRQSPPTTLNFALDEIARIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189 (427)
Q Consensus 129 ~~-~~~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg 189 (427)
++ .+.|.|+|+++.+.+.+.+.|.+.. ......++..|+.+|++.+.|+..++|||++|++
T Consensus 70 in~~i~~~Lig~~~~dq~~iD~~li~lDgT~nks~lGaNailAvS~A~akAaA~~~~~pLy~yi~~ 135 (139)
T d2fyma2 70 VNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAE 135 (139)
T ss_dssp HHTHHHHHHTTSBTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHhCCchhhhHHHHHHHHhccCCccccccchHHHHHHHHHHHHHHHHHcCCCHHHHhHh
Confidence 44 4789999999999999888886541 1123367899999999999999999999999874
|
| >d2al1a2 d.54.1.1 (A:1-141) Enolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.98 E-value=4.1e-05 Score=63.55 Aligned_cols=96 Identities=17% Similarity=0.122 Sum_probs=67.9
Q ss_pred eeEEEEEEEEcCCceEEEEeecCCC----------------CCc-chHHHHHHHHH-HhhHhc--CCCCCCHHHHHHHHH
Q 014285 93 VENVAIRVELSNGCVGWGEVAVVPL----------------VTG-DQTKALVKVRE-ACQFLR--QSPPTTLNFALDEIA 152 (427)
Q Consensus 93 ~~~vlV~v~t~~G~~G~GE~~~~~~----------------~s~-~~~~~~~~~~~-~~~~l~--g~~~~~~~~~~~~l~ 152 (427)
.+++-|+|.|++| .|.+-++..-. |.+ ....++..++. +.|.|+ |.++.++..+.+.|.
T Consensus 16 ~PTvev~v~~~~g-~~ra~~PSGaStG~~EA~elrD~~~~~~~gkgV~~av~nin~~i~~~Li~~g~~~~dq~~iD~~li 94 (141)
T d2al1a2 16 NPTVEVELTTEKG-VFRSIVPSGASTGVHEALEMRDGDKSKWMGKGVLHAVKNVNDVIAPAFVKANIDVKDQKAVDDFLI 94 (141)
T ss_dssp CEEEEEEEEETTE-EEEEECCBCSSCCTTSCCCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHHHHTCCTTCHHHHHHHHH
T ss_pred CcEEEEEEEECCC-eEEEeeccCCCCCcceeeeecCCCccccccccchhHHHHHHHHhHHHHhhcCCchhhHHHHHHHHH
Confidence 5789999999987 47665432100 111 12234444544 778887 778889988888876
Q ss_pred HHC----CCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCC
Q 014285 153 RIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189 (427)
Q Consensus 153 ~~~----~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg 189 (427)
+.- .....+++..|+.+|++.+.++..|+|||++|++
T Consensus 95 ~lDgT~nks~lGaNailAvS~A~akAaA~~~~~pLy~yl~~ 135 (141)
T d2al1a2 95 SLDGTANKSKLGANAILGVSLAASRAAAAEKNVPLYKHLAD 135 (141)
T ss_dssp HHHCSTTSTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HccCCcchhhhhhHHHHHHHHHHHHHHHHHcCCCHHHHHHh
Confidence 541 1122367899999999999999999999999975
|
| >d1pdza2 d.54.1.1 (A:1-139) Enolase {European lobster (Homarus vulgaris) [TaxId: 6707]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: European lobster (Homarus vulgaris) [TaxId: 6707]
Probab=97.80 E-value=0.00012 Score=60.24 Aligned_cols=95 Identities=20% Similarity=0.160 Sum_probs=65.5
Q ss_pred eeEEEEEEEEcCCceEEEEeecCCC-----------------CCc-chHHHHHHHHH-HhhHhc--CCCCCCHHHHHHHH
Q 014285 93 VENVAIRVELSNGCVGWGEVAVVPL-----------------VTG-DQTKALVKVRE-ACQFLR--QSPPTTLNFALDEI 151 (427)
Q Consensus 93 ~~~vlV~v~t~~G~~G~GE~~~~~~-----------------~s~-~~~~~~~~~~~-~~~~l~--g~~~~~~~~~~~~l 151 (427)
.+++-|+|.+++| +|.+-+ |... |.+ ....++..+++ +.|.|+ |.++.+...+.+.|
T Consensus 16 ~PTVev~v~~~~~-~~ra~~-PSGAStG~~EA~elrD~~~~~~~Gkgv~~Av~nin~~i~~~Li~~g~~~~dq~~iD~~L 93 (139)
T d1pdza2 16 NPTVEVDLYTSKG-LFRAAV-PSGASTGVHEALEMRDGDKSKYHGKSVFNAVKNVNDVIVPEIIKSGLKVTQQKECDEFM 93 (139)
T ss_dssp CEEEEEEEEETTE-EEEEEC-CCCBSSCSSSCBCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHHHHTCCTTCHHHHHHHH
T ss_pred CcEEEEEEEECCC-eEEEec-ccCcCCcchhheecccCCccccccccccceeecchhhhhHHHHhcCccccchhhhHHHH
Confidence 5789999999865 355543 3211 111 12234444543 778887 57888988888877
Q ss_pred HHHC----CCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCC
Q 014285 152 ARIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189 (427)
Q Consensus 152 ~~~~----~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg 189 (427)
.+.- ......++..|+.+|++.+.++..|+|||++|++
T Consensus 94 i~lDgT~nks~lGaNailAvS~A~akAaA~~~~~pLy~yi~~ 135 (139)
T d1pdza2 94 CKLDGTENKSSLGANAILGVSLAICKAGAAELGIPLYRHIAN 135 (139)
T ss_dssp HHHHCSSSSTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HhhcCccchhhhhhHHHHHHHHHHHHHHHHHcCCcHHHHhhc
Confidence 6541 1123367899999999999999999999999975
|
| >d2akza2 d.54.1.1 (A:1-139) Enolase {Human (Homo sapiens), gamma isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Human (Homo sapiens), gamma isoform [TaxId: 9606]
Probab=97.66 E-value=0.00025 Score=58.53 Aligned_cols=95 Identities=18% Similarity=0.119 Sum_probs=66.5
Q ss_pred eeEEEEEEEEcCCceEEEEeecCCCCCc------------------chHHHHHHHHH-HhhHhc--CCCCCCHHHHHHHH
Q 014285 93 VENVAIRVELSNGCVGWGEVAVVPLVTG------------------DQTKALVKVRE-ACQFLR--QSPPTTLNFALDEI 151 (427)
Q Consensus 93 ~~~vlV~v~t~~G~~G~GE~~~~~~~s~------------------~~~~~~~~~~~-~~~~l~--g~~~~~~~~~~~~l 151 (427)
.+++-|+|.+++| +|.+-+ |....++ ....++..+++ +.|.|+ |.++.+...+++.|
T Consensus 16 ~PTvevev~~~~g-~~~a~~-PsGaStG~~Ea~elrd~~~~~~~gkgV~~Av~~i~~~i~~~Li~~g~~~~dQ~~iD~~L 93 (139)
T d2akza2 16 NPTVEVDLYTAKG-LFRAAV-PSGASTGIYEALELRDGDKQRYLGKGVLKAVDHINSTIAPALISSGLSVVEQEKLDNLM 93 (139)
T ss_dssp CEEEEEEEEETTE-EEEEEC-CBCSSCCTTSCCCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHHHHCCCTTCHHHHHHHH
T ss_pred CeEEEEEEEECCC-eEEEec-ccccccchhhhhhccccccccccCCchhhHHHhhHHHHHHHHHhcCCChhhHHHHHHHH
Confidence 5789999999876 354443 3211111 11234444443 788886 88999999888888
Q ss_pred HHHC----CCChhhhHHHHHHHHHHHHHHhhCCCChhhhhCC
Q 014285 152 ARIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189 (427)
Q Consensus 152 ~~~~----~g~~~~~a~~aie~Al~Dl~gk~~g~Pl~~Llgg 189 (427)
.+.. .....+.+..|+.+|++.+.|+..++|||+++++
T Consensus 94 ~~lDgt~nks~lGaNailAvSlA~akA~A~~~~~pLy~yi~~ 135 (139)
T d2akza2 94 LELDGTENKSKFGANAILGVSLAVCKAGAAERELPLYRHIAQ 135 (139)
T ss_dssp HHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHccCccchhhcChHHHHHHHHHHHHHHHHHcCCcHHHHhHh
Confidence 6641 1123367899999999999999999999999864
|
| >d1kcza2 d.54.1.1 (A:1-160) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: beta-Methylaspartase species: Clostridium tetanomorphum [TaxId: 1553]
Probab=97.17 E-value=0.0019 Score=53.09 Aligned_cols=94 Identities=21% Similarity=0.329 Sum_probs=67.4
Q ss_pred eeeEEEEEEEEcCCceEEEEeecCC--CCCcc-----hHHHHHHHH-HHhhHhcCCCCCCHHHHHHHHHHH-CCCC-hhh
Q 014285 92 NVENVAIRVELSNGCVGWGEVAVVP--LVTGD-----QTKALVKVR-EACQFLRQSPPTTLNFALDEIARI-LPGS-EFA 161 (427)
Q Consensus 92 ~~~~vlV~v~t~~G~~G~GE~~~~~--~~s~~-----~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~l~~~-~~g~-~~~ 161 (427)
..+.+.|.+..+||.+.||.|+..- +.++. ..+.+..++ .+.|.|.|++........+.+.+. +.|. .-.
T Consensus 49 ~gesisV~l~L~dG~va~GDCaaVqySGagGRDPLF~A~~~i~~~e~~v~p~L~g~d~~~Fr~~a~~~d~~~~~g~~LHt 128 (160)
T d1kcza2 49 KGESISVLLVLEDGQVAHGDCAAVQYSGAGGRDPLFLAKDFIPVIEKEIAPKLIGREITNFKPMAEEFDKMTVNGNRLHT 128 (160)
T ss_dssp ECCEEEEEEEETTSCEEEEEECCCTTTTSTTSCSCCCHHHHHHHHHHHTHHHHTTCBCCCHHHHHHHHHHCEETTEECCH
T ss_pred cCcEEEEEEEeCCCCEEEeeehheeecCCCCCCccccHHHHHHHHHHhhhHHHhCCcHHHHHHHHHHHhhcccCCcchhH
Confidence 3568889999999999999998752 12221 123333343 488999999999998888887753 3332 225
Q ss_pred hHHHHHHHHHHHHHHhhCCCChhh
Q 014285 162 SVRAGVEMALIDAVANSIDIPLWR 185 (427)
Q Consensus 162 ~a~~aie~Al~Dl~gk~~g~Pl~~ 185 (427)
+++.||.+||+|+.++..+.-..+
T Consensus 129 AiRYGvSQALL~A~A~a~r~tmae 152 (160)
T d1kcza2 129 AIRYGITQAILDAVAKTRKVTMAE 152 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHhHHHHHHHHHHHHcCCcHHH
Confidence 689999999999999987554333
|
| >d1kkoa2 d.54.1.1 (A:1-160) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: beta-Methylaspartase species: Citrobacter amalonaticus [TaxId: 35703]
Probab=97.11 E-value=0.0024 Score=52.38 Aligned_cols=94 Identities=21% Similarity=0.212 Sum_probs=66.6
Q ss_pred eeeEEEEEEEEcCCceEEEEeecCC--CCCcc-----hHHHHHHHH-HHhhHhcCCCCCCHHHHHHHHHHH-CCCC-hhh
Q 014285 92 NVENVAIRVELSNGCVGWGEVAVVP--LVTGD-----QTKALVKVR-EACQFLRQSPPTTLNFALDEIARI-LPGS-EFA 161 (427)
Q Consensus 92 ~~~~vlV~v~t~~G~~G~GE~~~~~--~~s~~-----~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~l~~~-~~g~-~~~ 161 (427)
..+.+.|.+..+||.+.||.|+..- +.++. ..+.+..++ .+.|.|.|++..........+... +.|. .-.
T Consensus 49 ~gesisV~l~L~dG~va~GDCaaVqySGagGRDPLF~A~~~i~~~e~~v~p~L~g~d~~~Fr~~A~~~d~~~~~g~~LHt 128 (160)
T d1kkoa2 49 AGECVSVQLILENGAVAVGDCAAVQYSGAGGRDPLFLAEHFIPFLNDHIKPLLEGRDVDAFLPNARFFDKLRIDGNLLHT 128 (160)
T ss_dssp EEEEEEEEEEETTSCEEEEEECCCTTTTSTTCCCCCCHHHHHHHHHHHTHHHHTTCBCSCSHHHHHHHHHCEETTEECCH
T ss_pred cCcEEEEEEEeCCCCEEEeeehheeecCCCCCCccccHHHHHHHHHHhhhHHHhCCcHHHHHHHHHHHhhcccCCCchhH
Confidence 3578889999999999999998752 12221 123333343 488999999999988777777653 2332 225
Q ss_pred hHHHHHHHHHHHHHHhhCCCChhh
Q 014285 162 SVRAGVEMALIDAVANSIDIPLWR 185 (427)
Q Consensus 162 ~a~~aie~Al~Dl~gk~~g~Pl~~ 185 (427)
+++.||.+||+|+.++..+.-..+
T Consensus 129 AiRYGvSQALL~A~A~a~r~tmae 152 (160)
T d1kkoa2 129 AVRYGLSQALLDATALASGRLKTE 152 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhHHHHHHHHHHHHcCccHHH
Confidence 689999999999999987554333
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.78 E-value=0.015 Score=54.45 Aligned_cols=120 Identities=17% Similarity=0.263 Sum_probs=84.7
Q ss_pred HHHHHHHhhcCCcEEEEeccC------------C---------ch----hhHHHHHHHHH-hCCCc--EEEEeC----CC
Q 014285 209 SELASKYCKLGFSTLKLNVGR------------N---------IT----ADFDVLQAIHA-VHPHC--SFILDA----NE 256 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG~------------~---------~~----~d~~~l~~ir~-~~~~~--~L~vDA----N~ 256 (427)
.+.|+.+.+.||..|-+..+. + ++ --++.+++||+ +++++ .+|+-+ ++
T Consensus 144 ~~aA~ra~~AGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eii~air~~vg~d~~v~~R~s~~d~~~~ 223 (330)
T d1ps9a1 144 ARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVED 223 (330)
T ss_dssp HHHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTT
T ss_pred HHHHHHHHHhCcCeeeeccchHHHHHHHHHhhcccccccCCccHhhhhHHHHHHHHHHHHHcCCCceeEecccccccccC
Confidence 445666778999999999862 1 11 12567889998 57764 334433 47
Q ss_pred CCCHHHHHHHHHHhhhCCCCCceEe--------------CCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHH
Q 014285 257 GYTSEEAVEVLGKLNDMGVIPVLFE--------------QPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKV 322 (427)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~~~iE--------------qP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~l 322 (427)
+++.++++++++.|++.++. ++. .|.+.+.+ ..+++.+++.+++||..-=.+.+++...++
T Consensus 224 g~~~~~~~~~~~~l~~~g~d--~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~ 298 (330)
T d1ps9a1 224 GGTFAETVELAQAIEAAGAT--IINTGIGWHEARIPTIATPVPRGAF---SWVTRKLKGHVSLPLVTTNRINDPQVADDI 298 (330)
T ss_dssp CCCHHHHHHHHHHHHHHTCS--EEEEEECBTTCSSCSSSTTSCTTTT---HHHHHHHTTSCSSCEEECSSCCSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhh--hhhcccccccccccccCCCCcchhH---HHHHHHHHhhCCceEEEeCCCCCHHHHHHH
Confidence 78999999999999986653 333 22232333 334444556789999988788999999999
Q ss_pred HHcCCCcEEEe
Q 014285 323 MQENLASVVNI 333 (427)
Q Consensus 323 l~~~a~~~i~l 333 (427)
|+.+.+|.|-+
T Consensus 299 l~~g~~D~V~~ 309 (330)
T d1ps9a1 299 LSRGDADMVSM 309 (330)
T ss_dssp HHTTSCSEEEE
T ss_pred HHCCCcchhHh
Confidence 99999998765
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=96.40 E-value=0.029 Score=52.46 Aligned_cols=123 Identities=11% Similarity=0.114 Sum_probs=83.9
Q ss_pred HHHHHHHhhcCCcEEEEeccC---------------------Cch----hhHHHHHHHHHh-CCCcEEEEeCC----CCC
Q 014285 209 SELASKYCKLGFSTLKLNVGR---------------------NIT----ADFDVLQAIHAV-HPHCSFILDAN----EGY 258 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG~---------------------~~~----~d~~~l~~ir~~-~~~~~L~vDAN----~~~ 258 (427)
.+.|+..++.||..+.+..+. +++ --++.+++||+. ...+-+++-++ +++
T Consensus 146 ~~AA~ra~~AGfDGVEiH~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eiv~air~~~~~~~~vr~~~~~~~~~g~ 225 (337)
T d1z41a1 146 KQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKGL 225 (337)
T ss_dssp HHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTSC
T ss_pred HHHHHHHHHcCCCeEEeeccCcceeeeecCCccccccccccchhhhhhhHHHHHHHHHhhhhcccceEEecccccccCcc
Confidence 344666778999999999852 111 126678899985 45666677654 567
Q ss_pred CHHHHHHHHHHhhhCCCCCceEe-------CCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEE
Q 014285 259 TSEEAVEVLGKLNDMGVIPVLFE-------QPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVV 331 (427)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iE-------qP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i 331 (427)
+.++++++++.|++.++. +++ .|-..........+++.+|+.+++||..-=.+.+++..+++|+.+.+|.|
T Consensus 226 ~~~~~~~~~~~l~~~g~d--~~~~s~g~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V 303 (337)
T d1z41a1 226 DIADHIGFAKWMKEQGVD--LIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLI 303 (337)
T ss_dssp CHHHHHHHHHHHHHTTCC--EEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEE
T ss_pred chhhhHHHHHHHHHcCCc--ccccccccccccccccCCcccHHHHHHHHHhcCceEEEeCCcCCHHHHHHHHHCCCccee
Confidence 999999999999987764 332 12100000112234444445789999887788899999999999999986
Q ss_pred Ee
Q 014285 332 NI 333 (427)
Q Consensus 332 ~l 333 (427)
.+
T Consensus 304 ~~ 305 (337)
T d1z41a1 304 FI 305 (337)
T ss_dssp EE
T ss_pred hh
Confidence 64
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=95.30 E-value=0.082 Score=49.79 Aligned_cols=119 Identities=10% Similarity=0.220 Sum_probs=80.3
Q ss_pred HHHHHHHhhcCCcEEEEeccC---------------------Cch----hhHHHHHHHHHh-CCC-cEEEEeC-------
Q 014285 209 SELASKYCKLGFSTLKLNVGR---------------------NIT----ADFDVLQAIHAV-HPH-CSFILDA------- 254 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG~---------------------~~~----~d~~~l~~ir~~-~~~-~~L~vDA------- 254 (427)
.+.|+..++.||..|-+..+. +++ --++.+++||+. +++ +-+|+-+
T Consensus 163 ~~AA~rA~~aGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~~g~d~i~~r~s~~~~~~~~ 242 (363)
T d1vyra_ 163 RQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNV 242 (363)
T ss_dssp HHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTTB
T ss_pred HHHHHHHHHhccceeeecccCceeeeeeecCcccccccccccchhhhhHhHHHHHhhhhhhcCCCCcceeecccccccch
Confidence 445677788999999999862 111 236778999984 555 4456543
Q ss_pred -CCCCCHHHHHHHHHHhhhCCCCCceEeCCCC-----CCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCC
Q 014285 255 -NEGYTSEEAVEVLGKLNDMGVIPVLFEQPVH-----RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLA 328 (427)
Q Consensus 255 -N~~~s~~~A~~~l~~L~~~~l~~~~iEqP~~-----~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~ 328 (427)
.++++.++++++++.|++.++. ||+=-.. ..-...+++. +++.+.+||+..= ..+.+..+++|+.+.+
T Consensus 243 ~~gg~~~~e~~~~~~~l~~~gvd--~i~vs~~~~~~~~~~~~~~~~~---~~~~~~~~vi~~G-~~t~~~ae~~l~~G~~ 316 (363)
T d1vyra_ 243 DNGPNEEADALYLIEELAKRGIA--YLHMSETDLAGGKPYSEAFRQK---VRERFHGVIIGAG-AYTAEKAEDLIGKGLI 316 (363)
T ss_dssp CCCTTHHHHHHHHHHHHHHTTCS--EEEEECCBTTBCCCCCHHHHHH---HHHHCCSEEEEES-SCCHHHHHHHHHTTSC
T ss_pred hhcccchHHHHHHHHHHHhcCCe--eeecccCCccCCccccHHHHHH---HHHhcCceEEecC-CCCHHHHHHHHHCCCc
Confidence 2567899999999999998874 6542211 0111233332 3346788887764 4588899999999999
Q ss_pred cEEEe
Q 014285 329 SVVNI 333 (427)
Q Consensus 329 ~~i~l 333 (427)
|.|-+
T Consensus 317 DlV~~ 321 (363)
T d1vyra_ 317 DAVAF 321 (363)
T ss_dssp SEEEE
T ss_pred ceehh
Confidence 98764
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=95.11 E-value=0.099 Score=47.97 Aligned_cols=139 Identities=19% Similarity=0.267 Sum_probs=96.3
Q ss_pred ceeeeeeecCCCHHHHHHHHHHHhhcCCcEEEEeccC----------------CchhhHHHHHHHHHhCCCcEEEEeCCC
Q 014285 193 SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAVHPHCSFILDANE 256 (427)
Q Consensus 193 ~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~----------------~~~~d~~~l~~ir~~~~~~~L~vDAN~ 256 (427)
.-|+...+...+|+.+.+.+ +..+.||..|-+.+|. +++.-.+.++++++.. ++.+.|=..=
T Consensus 54 e~p~~~Ql~g~~p~~~~~aa-~~~~~~~~~IdlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~-~~pvsvK~Rl 131 (305)
T d1vhna_ 54 ERNVAVQIFGSEPNELSEAA-RILSEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSV-SGKFSVKTRL 131 (305)
T ss_dssp CTTEEEEEECSCHHHHHHHH-HHHTTTCSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHC-SSEEEEEEES
T ss_pred CCCeEEEEeccchhhhhhhh-hhhhhheeeeeEEEEecchhhcccccceeeccCHHHHHHHhhhhhhhc-cccccccccc
Confidence 34667778888999987766 5567899999999983 3444456677777643 2233333333
Q ss_pred CCCHHHHHHHHHHhhhCCCCCceE-----eCCC-CCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcE
Q 014285 257 GYTSEEAVEVLGKLNDMGVIPVLF-----EQPV-HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASV 330 (427)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~~~i-----EqP~-~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~ 330 (427)
+|+.++..++++.+++.|+....| +|.. .+-||+..+++. ..+||...=.+.+..|..++++.-.+|.
T Consensus 132 G~d~~~~~~~~~~l~~~G~~~itvH~Rt~~q~~~~~a~~~~i~~~~------~~ipvi~NGdI~s~~d~~~~l~~tg~dg 205 (305)
T d1vhna_ 132 GWEKNEVEEIYRILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVLE------KRIPTFVSGDIFTPEDAKRALEESGCDG 205 (305)
T ss_dssp CSSSCCHHHHHHHHHHTTCCEEEEESSCTTTTTSSCCCGGGGGGSC------CSSCEEEESSCCSHHHHHHHHHHHCCSE
T ss_pred CcccchhhHHHHHHHHhCCcEEEechhhhhhccccchhhhHHHhhh------hhhhhhcccccccHHHHHHHHHhcCCCe
Confidence 555556678888998888641111 3443 345788887773 3689988889999999999998767999
Q ss_pred EEeCCCCcc
Q 014285 331 VNIKLAKFG 339 (427)
Q Consensus 331 i~lk~~~~G 339 (427)
+.+==+..|
T Consensus 206 VMiGRgal~ 214 (305)
T d1vhna_ 206 LLVARGAIG 214 (305)
T ss_dssp EEESGGGTT
T ss_pred EehhHHHHH
Confidence 998555544
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=92.83 E-value=0.63 Score=42.89 Aligned_cols=125 Identities=9% Similarity=0.050 Sum_probs=72.0
Q ss_pred HHHHHHHhhcCCcEEEEeccC---------------------Cchh----hHHHHHHHHH-hCCC--cEEEEeCC-----
Q 014285 209 SELASKYCKLGFSTLKLNVGR---------------------NITA----DFDVLQAIHA-VHPH--CSFILDAN----- 255 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG~---------------------~~~~----d~~~l~~ir~-~~~~--~~L~vDAN----- 255 (427)
.+.|+..+++||..|-+..+. +++. -++.+++||+ ++++ +-+|+=++
T Consensus 152 ~~aA~~a~~aGfDgVEih~ahGyLl~qFls~~~N~R~D~yGGs~enR~Rf~~EIi~aIr~~vg~~~~i~~R~s~~~~~~~ 231 (340)
T d1djqa1 152 VDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGP 231 (340)
T ss_dssp HHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSSCT
T ss_pred HHHHHHHHHhccceeeeeccccchhhhhhhhccccccccccccHHhhhHHHHHHHHHHHHHHhhhhhceeeccccccccC
Confidence 345667778999999999852 1111 2567899998 5776 34444322
Q ss_pred CCCCHHHHHHHHHHhhhCCCC---------CceEeCCCCCCC--hhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHH
Q 014285 256 EGYTSEEAVEVLGKLNDMGVI---------PVLFEQPVHRDD--WSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQ 324 (427)
Q Consensus 256 ~~~s~~~A~~~l~~L~~~~l~---------~~~iEqP~~~~d--~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~ 324 (427)
+..+.+.....+..+.+.++. ..|.+++.+... -.....+++.+|+.+++||..-=.+.+.....++|+
T Consensus 232 ~~~~~e~~~~~~~~l~~~~vd~~~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~G~i~~~~~a~~~l~ 311 (340)
T d1djqa1 232 GQIEAEVDGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEKMIEIVT 311 (340)
T ss_dssp TSCCTTTHHHHHHHHHTTTCSEEEEEESCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTCSSCEEECSCCCCHHHHHHHHH
T ss_pred CCCchhhhHHHHHHHHhhccceeeeeecccccccccccccccCCccccHHHHHHHHHHcCCeEEEECCCCCHHHHHHHHH
Confidence 222333333333444443322 012233332211 111223334444678999987668889999999999
Q ss_pred cCCCcEEEe
Q 014285 325 ENLASVVNI 333 (427)
Q Consensus 325 ~~a~~~i~l 333 (427)
.+.+|.|-+
T Consensus 312 ~G~aDlV~~ 320 (340)
T d1djqa1 312 KGYADIIGC 320 (340)
T ss_dssp TTSCSBEEE
T ss_pred CCCccchhh
Confidence 998998654
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=91.45 E-value=0.64 Score=40.00 Aligned_cols=96 Identities=9% Similarity=0.080 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHhhhCCCCCceEeCCCCCCCh-hhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCC
Q 014285 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW-SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK 337 (427)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~-~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~ 337 (427)
+.+++.+..+.|.+.+++ .||=+++..+. +.++++++ +...+-|..| ++.+.++++++++.+ +++++ -|..
T Consensus 24 ~~~~~~~~~~al~~~Gi~--~iEitl~~~~a~~~I~~l~~---~~p~~~vGaG-TV~~~~~~~~a~~aG-a~Fiv-SP~~ 95 (212)
T d1vhca_ 24 NADDILPLADTLAKNGLS--VAEITFRSEAAADAIRLLRA---NRPDFLIAAG-TVLTAEQVVLAKSSG-ADFVV-TPGL 95 (212)
T ss_dssp SGGGHHHHHHHHHHTTCC--EEEEETTSTTHHHHHHHHHH---HCTTCEEEEE-SCCSHHHHHHHHHHT-CSEEE-CSSC
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCChhHHHHHHHHHh---cCCCceEeee-ecccHHHHHHHHhhC-CcEEE-CCCC
Confidence 578999999999999986 99999986553 44556654 2346767666 888999999999987 56543 3333
Q ss_pred ccHHHHHHHHHHHHHcCCcEEEcccCchhH
Q 014285 338 FGVLGTLQIIKATRKSGLHLMIDGMIETRL 367 (427)
Q Consensus 338 ~Gi~~~~~~~~~A~~~gi~~~~~s~~es~i 367 (427)
. .++++.|++++++++++.+.-|-+
T Consensus 96 ~-----~~v~~~a~~~~i~~iPGv~TpsEi 120 (212)
T d1vhca_ 96 N-----PKIVKLCQDLNFPITPGVNNPMAI 120 (212)
T ss_dssp C-----HHHHHHHHHTTCCEECEECSHHHH
T ss_pred C-----HHHHHHHHhcCCCccCCcCCHHHH
Confidence 2 578899999999999999865543
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=90.79 E-value=0.75 Score=39.56 Aligned_cols=96 Identities=15% Similarity=0.099 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHhhhCCCCCceEeCCCCCCCh-hhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCC
Q 014285 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW-SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK 337 (427)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~-~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~ 337 (427)
++++|++.++.|.+.|++ .||=+++..++ +.+++|++. ...+-|..| ++.+.++++++++.+ +++++ -|+.
T Consensus 25 ~~~~a~~~~~al~~~Gi~--~iEitl~tp~a~~~I~~l~~~---~p~~~vGaG-TV~~~~~~~~a~~aG-a~Fiv-SP~~ 96 (213)
T d1wbha1 25 KLEHAVPMAKALVAGGVR--VLNVTLRTECAVDAIRAIAKE---VPEAIVGAG-TVLNPQQLAEVTEAG-AQFAI-SPGL 96 (213)
T ss_dssp SGGGHHHHHHHHHHTTCC--EEEEESCSTTHHHHHHHHHHH---CTTSEEEEE-SCCSHHHHHHHHHHT-CSCEE-ESSC
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCChhHHHHHHHHHHH---CCCCeeecc-ccccHHHHHHHHHCC-CcEEE-CCCC
Confidence 689999999999999986 99999986554 455666652 345666555 889999999999987 45433 2322
Q ss_pred ccHHHHHHHHHHHHHcCCcEEEcccCchhH
Q 014285 338 FGVLGTLQIIKATRKSGLHLMIDGMIETRL 367 (427)
Q Consensus 338 ~Gi~~~~~~~~~A~~~gi~~~~~s~~es~i 367 (427)
. .++++.|+++|++++++.+.-|-+
T Consensus 97 ~-----~~v~~~a~~~~i~~iPGv~TpsEi 121 (213)
T d1wbha1 97 T-----EPLLKAATEGTIPLIPGISTVSEL 121 (213)
T ss_dssp C-----HHHHHHHHHSSSCEEEEESSHHHH
T ss_pred C-----HHHHHHHHhcCCCccCCcCCHHHH
Confidence 2 578899999999999999875543
|
| >d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Morphinone reductase species: Pseudomonas putida [TaxId: 303]
Probab=90.14 E-value=0.89 Score=42.44 Aligned_cols=120 Identities=16% Similarity=0.231 Sum_probs=74.4
Q ss_pred HHHHHHHhhcCCcEEEEeccCC---------------------ch----hhHHHHHHHHH-hCCC-cEEEEeC----CC-
Q 014285 209 SELASKYCKLGFSTLKLNVGRN---------------------IT----ADFDVLQAIHA-VHPH-CSFILDA----NE- 256 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG~~---------------------~~----~d~~~l~~ir~-~~~~-~~L~vDA----N~- 256 (427)
.+.|+..+++||..|-|+.+.. ++ --++.+++||+ ++++ +.+++-. ++
T Consensus 166 ~~AA~rA~~AGfDgVEIH~ahGYLl~qFLSp~~N~RtDeYGGSlENR~Rf~~EIi~aIR~~vg~~~v~~r~~~~~~~~g~ 245 (374)
T d1gwja_ 166 RQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELFGL 245 (374)
T ss_dssp HHHHHHHHHTTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCCTTC
T ss_pred HHHHHHHHHhCCCEEEeccchhhhHHHHHHhhcCccccccccchhhhhhhHHHHHHHHHHHcCCcceeeeeeeeccccCC
Confidence 4456777889999999998621 11 12677899998 4655 3344432 11
Q ss_pred CC--CHHHHHHHHHHhhhCCCCCceEeCCCCC---C-ChhhHH-HHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCc
Q 014285 257 GY--TSEEAVEVLGKLNDMGVIPVLFEQPVHR---D-DWSGLH-DVSNFARDTYGISVVADESCRSLNDVQKVMQENLAS 329 (427)
Q Consensus 257 ~~--s~~~A~~~l~~L~~~~l~~~~iEqP~~~---~-d~~~~~-~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~ 329 (427)
.. ....+....+.|+..++....+.+|-.. . -..+++ .++ +...+||..--.+ +....+++|+.+.+|
T Consensus 246 ~~~~~~~~~~~~~~~ld~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~pvi~~G~i-~~~~ae~~l~~g~aD 320 (374)
T d1gwja_ 246 TDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGDITYPEGFREQMR----QRFKGGLIYCGNY-DAGRAQARLDDNTAD 320 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHHTCSEEEEECSCBTTBCCCCCTTHHHHHH----HHCCSEEEEESSC-CHHHHHHHHHTTSCS
T ss_pred cccchHHHHHHhhccccccCceEEEeccCcccCCCcchhHHHHHHHH----HHcCCCEEEECCc-CHHHHHHHHHcCCCc
Confidence 11 2334566677777777653345666421 1 112333 343 3678898776565 788889999999999
Q ss_pred EEEe
Q 014285 330 VVNI 333 (427)
Q Consensus 330 ~i~l 333 (427)
.|-+
T Consensus 321 lV~~ 324 (374)
T d1gwja_ 321 AVAF 324 (374)
T ss_dssp EEEE
T ss_pred Eehh
Confidence 8654
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=89.76 E-value=0.51 Score=40.77 Aligned_cols=96 Identities=14% Similarity=0.117 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHhhhCCCCCceEeCCCCCCC-hhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCC
Q 014285 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDD-WSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK 337 (427)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d-~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~ 337 (427)
++++|++.++.|-+.|++ .||=+++..+ ++.++.+++ +.-.+-|..| ++.+..+++++++.++ ++++ -|+.
T Consensus 27 ~~~~a~~~~~al~~~Gi~--~iEitl~~p~a~~~i~~l~~---~~p~~~vGaG-TV~~~~~~~~a~~aGa-~Fiv-sP~~ 98 (216)
T d1mxsa_ 27 REEDILPLADALAAGGIR--TLEVTLRSQHGLKAIQVLRE---QRPELCVGAG-TVLDRSMFAAVEAAGA-QFVV-TPGI 98 (216)
T ss_dssp CGGGHHHHHHHHHHTTCC--EEEEESSSTHHHHHHHHHHH---HCTTSEEEEE-CCCSHHHHHHHHHHTC-SSEE-CSSC
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCChhHHHHHHHHHH---hCCCcceeee-eeecHHHHHHHHhCCC-CEEE-CCCC
Confidence 479999999999999987 8999997544 344555654 2345767666 8899999999999884 5433 3333
Q ss_pred ccHHHHHHHHHHHHHcCCcEEEcccCchhH
Q 014285 338 FGVLGTLQIIKATRKSGLHLMIDGMIETRL 367 (427)
Q Consensus 338 ~Gi~~~~~~~~~A~~~gi~~~~~s~~es~i 367 (427)
..++++.|+++|++++++.+.-|-+
T Consensus 99 -----~~~v~~~a~~~~i~~iPGv~TpsEi 123 (216)
T d1mxsa_ 99 -----TEDILEAGVDSEIPLLPGISTPSEI 123 (216)
T ss_dssp -----CHHHHHHHHHCSSCEECEECSHHHH
T ss_pred -----cHHHHHHHHhcCCCccCCcCCHHHH
Confidence 2578899999999999999865544
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=89.61 E-value=1.9 Score=36.93 Aligned_cols=142 Identities=12% Similarity=0.126 Sum_probs=102.2
Q ss_pred ecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCce
Q 014285 200 IPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVL 279 (427)
Q Consensus 200 i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~ 279 (427)
+...++++..+.++.+.+.|++++-+-... ..-++.++.+|+.+|+ +.|=|-.-.+.+++.+..+. |.+ |
T Consensus 23 l~~~~~~~a~~~~~al~~~Gi~~iEitl~~--p~a~~~i~~l~~~~p~--~~vGaGTV~~~~~~~~a~~a----Ga~--F 92 (216)
T d1mxsa_ 23 ITIAREEDILPLADALAAGGIRTLEVTLRS--QHGLKAIQVLREQRPE--LCVGAGTVLDRSMFAAVEAA----GAQ--F 92 (216)
T ss_dssp ECCSCGGGHHHHHHHHHHTTCCEEEEESSS--THHHHHHHHHHHHCTT--SEEEEECCCSHHHHHHHHHH----TCS--S
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEeCCC--hhHHHHHHHHHHhCCC--cceeeeeeecHHHHHHHHhC----CCC--E
Confidence 445688899999999999999999998853 3457889999998887 55777778888886665553 432 5
Q ss_pred EeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCC-cc-HHHHHHHHHHHHHcCCcE
Q 014285 280 FEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK-FG-VLGTLQIIKATRKSGLHL 357 (427)
Q Consensus 280 iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~-~G-i~~~~~~~~~A~~~gi~~ 357 (427)
+=-|.-. .++.+.|. +.++|..-| +.|+.++..+++.+ ++++-+=|.- .| ..-...+...- -++++
T Consensus 93 ivsP~~~---~~v~~~a~----~~~i~~iPG--v~TpsEi~~A~~~G-~~~vKlFPA~~~~g~~~ikal~~p~--p~~~f 160 (216)
T d1mxsa_ 93 VVTPGIT---EDILEAGV----DSEIPLLPG--ISTPSEIMMGYALG-YRRFKLFPAEISGGVAAIKAFGGPF--GDIRF 160 (216)
T ss_dssp EECSSCC---HHHHHHHH----HCSSCEECE--ECSHHHHHHHHTTT-CCEEEETTHHHHTHHHHHHHHHTTT--TTCEE
T ss_pred EECCCCc---HHHHHHHH----hcCCCccCC--cCCHHHHHHHHHCC-CCEEEeccccccccHHHHHHHhccc--ccCce
Confidence 6667653 34455554 578888875 67899999999875 8898888864 45 44444333322 37999
Q ss_pred EEcccC
Q 014285 358 MIDGMI 363 (427)
Q Consensus 358 ~~~s~~ 363 (427)
++++-+
T Consensus 161 iptGGV 166 (216)
T d1mxsa_ 161 CPTGGV 166 (216)
T ss_dssp EEBSSC
T ss_pred eccCCC
Confidence 987754
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=89.03 E-value=3.6 Score=35.02 Aligned_cols=142 Identities=18% Similarity=0.229 Sum_probs=102.6
Q ss_pred ecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCce
Q 014285 200 IPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVL 279 (427)
Q Consensus 200 i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~ 279 (427)
+...+.++..+.++.+.+.|++++-+-.-. +.-.+.++++++.+|+ +.|=|-.-.+.+++.+..+ .|.+ |
T Consensus 20 lr~~~~~~~~~~~~al~~~Gi~~iEitl~~--~~a~~~I~~l~~~~p~--~~vGaGTV~~~~~~~~a~~----aGa~--F 89 (212)
T d1vhca_ 20 IALDNADDILPLADTLAKNGLSVAEITFRS--EAAADAIRLLRANRPD--FLIAAGTVLTAEQVVLAKS----SGAD--F 89 (212)
T ss_dssp ECCSSGGGHHHHHHHHHHTTCCEEEEETTS--TTHHHHHHHHHHHCTT--CEEEEESCCSHHHHHHHHH----HTCS--E
T ss_pred EeCCCHHHHHHHHHHHHHCCCCEEEEeCCC--hhHHHHHHHHHhcCCC--ceEeeeecccHHHHHHHHh----hCCc--E
Confidence 445678888888999999999999999853 3456788889988887 5577777889988766654 3443 6
Q ss_pred EeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCC-Ccc-HHHHHHHHHHHHHcCCcE
Q 014285 280 FEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLA-KFG-VLGTLQIIKATRKSGLHL 357 (427)
Q Consensus 280 iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~-~~G-i~~~~~~~~~A~~~gi~~ 357 (427)
+=-|.-. .++.+.|. +.++|..-| +.|+.++..+++.+ ++++-+=|. .+| +.-...+... --++++
T Consensus 90 ivSP~~~---~~v~~~a~----~~~i~~iPG--v~TpsEi~~A~~~G-~~~vK~FPA~~~gG~~~lkal~~p--~p~~~~ 157 (212)
T d1vhca_ 90 VVTPGLN---PKIVKLCQ----DLNFPITPG--VNNPMAIEIALEMG-ISAVKFFPAEASGGVKMIKALLGP--YAQLQI 157 (212)
T ss_dssp EECSSCC---HHHHHHHH----HTTCCEECE--ECSHHHHHHHHHTT-CCEEEETTTTTTTHHHHHHHHHTT--TTTCEE
T ss_pred EECCCCC---HHHHHHHH----hcCCCccCC--cCCHHHHHHHHHCC-CCEEEEccccccchHHHHHHHhcc--ccCCeE
Confidence 7677642 45556664 568888875 67999999999876 889999886 465 5544443332 227999
Q ss_pred EEcccC
Q 014285 358 MIDGMI 363 (427)
Q Consensus 358 ~~~s~~ 363 (427)
++++-+
T Consensus 158 ~ptGGV 163 (212)
T d1vhca_ 158 MPTGGI 163 (212)
T ss_dssp EEBSSC
T ss_pred EecCCC
Confidence 998744
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=87.07 E-value=6.1 Score=33.49 Aligned_cols=143 Identities=17% Similarity=0.165 Sum_probs=102.8
Q ss_pred eecCCCHHHHHHHHHHHhhcCCcEEEEeccCCchhhHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCc
Q 014285 199 TIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPV 278 (427)
Q Consensus 199 ~i~~~~~~~~~~~~~~~~~~Gf~~iKlKiG~~~~~d~~~l~~ir~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~ 278 (427)
.+...++++..+.++.+.+.|+++|-+-.-. +.-++.++.+++.+|++ .+=|-.-.+.+++.+..+. |.+
T Consensus 20 vlr~~~~~~a~~~~~al~~~Gi~~iEitl~t--p~a~~~I~~l~~~~p~~--~vGaGTV~~~~~~~~a~~a----Ga~-- 89 (213)
T d1wbha1 20 VIVVKKLEHAVPMAKALVAGGVRVLNVTLRT--ECAVDAIRAIAKEVPEA--IVGAGTVLNPQQLAEVTEA----GAQ-- 89 (213)
T ss_dssp EECCSSGGGHHHHHHHHHHTTCCEEEEESCS--TTHHHHHHHHHHHCTTS--EEEEESCCSHHHHHHHHHH----TCS--
T ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEEeCCC--hhHHHHHHHHHHHCCCC--eeeccccccHHHHHHHHHC----CCc--
Confidence 3455788999999999999999999998843 34578899999988885 4667778899887665543 432
Q ss_pred eEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCC-cc-HHHHHHHHHHHHHcCCc
Q 014285 279 LFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK-FG-VLGTLQIIKATRKSGLH 356 (427)
Q Consensus 279 ~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~-~G-i~~~~~~~~~A~~~gi~ 356 (427)
|+=-|.-. .++.+.|. +.++|..-| +.|+.++..+++.+ ++++-+=|.. .| ..-...+.... -+++
T Consensus 90 FivSP~~~---~~v~~~a~----~~~i~~iPG--v~TpsEi~~A~~~G-~~~vKlFPA~~~Gg~~~lkal~~p~--p~~~ 157 (213)
T d1wbha1 90 FAISPGLT---EPLLKAAT----EGTIPLIPG--ISTVSELMLGMDYG-LKEFKFFPAEANGGVKALQAIAGPF--SQVR 157 (213)
T ss_dssp CEEESSCC---HHHHHHHH----HSSSCEEEE--ESSHHHHHHHHHTT-CCEEEETTTTTTTHHHHHHHHHTTC--TTCE
T ss_pred EEECCCCC---HHHHHHHH----hcCCCccCC--cCCHHHHHHHHHCC-CCEEEeccchhcChHHHHHHhcCcc--cCCc
Confidence 56666642 34455554 567888875 67899999999876 8899998874 47 44444333322 4789
Q ss_pred EEEcccC
Q 014285 357 LMIDGMI 363 (427)
Q Consensus 357 ~~~~s~~ 363 (427)
+++++-+
T Consensus 158 ~~ptGGV 164 (213)
T d1wbha1 158 FCPTGGI 164 (213)
T ss_dssp EEEBSSC
T ss_pred eeeeCCC
Confidence 9997754
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=86.84 E-value=1.4 Score=37.33 Aligned_cols=97 Identities=22% Similarity=0.201 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHhhhCCCCCceEeCCCCCCCh-hhHHHHHHhhccccCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCC
Q 014285 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW-SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK 337 (427)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqP~~~~d~-~~~~~L~~~~r~~~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~ 337 (427)
+.++|.+.++.|-+.+++ ++|=+++..+. +.+++|++. ....+-|..+ ++.+.++++++++.+ +++++ -|..
T Consensus 19 ~~~~a~~~~~al~~~Gi~--~iEitlr~p~a~~~i~~l~~~--~~~~~~vGaG-TV~~~~~~~~a~~aG-a~fiv-sP~~ 91 (202)
T d1wa3a1 19 SVEEAKEKALAVFEGGVH--LIEITFTVPDADTVIKELSFL--KEKGAIIGAG-TVTSVEQCRKAVESG-AEFIV-SPHL 91 (202)
T ss_dssp SHHHHHHHHHHHHHTTCC--EEEEETTSTTHHHHHHHTHHH--HHTTCEEEEE-SCCSHHHHHHHHHHT-CSEEE-CSSC
T ss_pred CHHHHHHHHHHHHHcCCC--EEEEecCCccHHHHHHHHHHh--cCCCcEEEec-ccccHHHHHHHHhhc-ccEEe-CCCC
Confidence 689999999999999986 99999986554 445565531 1234555544 788999999999987 55543 3322
Q ss_pred ccHHHHHHHHHHHHHcCCcEEEcccCchhH
Q 014285 338 FGVLGTLQIIKATRKSGLHLMIDGMIETRL 367 (427)
Q Consensus 338 ~Gi~~~~~~~~~A~~~gi~~~~~s~~es~i 367 (427)
. .++++.|.++|++++++.+.-|-+
T Consensus 92 ---~--~~v~~~~~~~~i~~iPGv~TpsEi 116 (202)
T d1wa3a1 92 ---D--EEISQFCKEKGVFYMPGVMTPTEL 116 (202)
T ss_dssp ---C--HHHHHHHHHHTCEEECEECSHHHH
T ss_pred ---c--HHHHHHHHhcCCceeCCcCcHHHH
Confidence 2 578899999999999998764443
|
| >d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]
Probab=84.33 E-value=4.1 Score=37.62 Aligned_cols=124 Identities=12% Similarity=0.059 Sum_probs=68.9
Q ss_pred HHHHHHHhhcCCcEEEEeccC---------------------Cch----hhHHHHHHHHH-hCCCcEEEEeCC-------
Q 014285 209 SELASKYCKLGFSTLKLNVGR---------------------NIT----ADFDVLQAIHA-VHPHCSFILDAN------- 255 (427)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKiG~---------------------~~~----~d~~~l~~ir~-~~~~~~L~vDAN------- 255 (427)
.+.|+..++.||..|-++.+. +++ -=++.+++||+ ++++.-+..-.+
T Consensus 162 ~~aA~~A~~aGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~lEii~aIr~~vg~~~~~~~~~~~~d~~~~ 241 (380)
T d1q45a_ 162 CLSALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDQYGGSIANRCRFLKQVVEGVVSAIGASKVGVRVSPAIDHLDA 241 (380)
T ss_dssp HHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCGGGC
T ss_pred HHHHHHHHHhCcceeeeccchhhhHhhhhccccccCccccCccccchhhhHHHHHHHHHHHccccCceEEEeeccccccc
Confidence 445677788999999999852 111 12667899998 576654333222
Q ss_pred -CCCCHHHHHHH------HHHhhhCCCCCceEeCCCCCC----------ChhhHHHHHHhhccccCCeEEecCCCCCHHH
Q 014285 256 -EGYTSEEAVEV------LGKLNDMGVIPVLFEQPVHRD----------DWSGLHDVSNFARDTYGISVVADESCRSLND 318 (427)
Q Consensus 256 -~~~s~~~A~~~------l~~L~~~~l~~~~iEqP~~~~----------d~~~~~~L~~~~r~~~~iPIa~dE~~~~~~~ 318 (427)
..+..+..+.. ...+...++....+++|-... -......+.+.+|..+++||+.-=. .+...
T Consensus 242 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~Gg-~~~~~ 320 (380)
T d1q45a_ 242 TDSDPLSLGLAVVGMLNKLQGVNGSKLAYLHVTQPRYHAYGQTESGRQGSDEEEAKLMKSLRMAYNGTFMSSGG-FNKEL 320 (380)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHTTSSCCSEEEEECCC---------------CHHHHHHHHHHHHSCSCEEEESS-CCHHH
T ss_pred ccccchhhhhhhhhhhhHhhhhccccceeEEeccCcccccccccccccCchhhhHHHHHHHhhccCCcEEeCCC-CCHHH
Confidence 22333333333 333333343222455553210 1112233444344457788866544 36788
Q ss_pred HHHHHHcCCCcEEEe
Q 014285 319 VQKVMQENLASVVNI 333 (427)
Q Consensus 319 ~~~ll~~~a~~~i~l 333 (427)
..++|+.+.+|.|-+
T Consensus 321 ae~~l~~G~~DlV~~ 335 (380)
T d1q45a_ 321 GMQAVQQGDADLVSY 335 (380)
T ss_dssp HHHHHHTTSCSEEEE
T ss_pred HHHHHHcCCccchhh
Confidence 889999998987653
|
| >d2basa1 c.1.33.1 (A:2-262) Hypothetical protein YkuI, N-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: EAL domain-like family: EAL domain domain: Hypothetical protein YkuI, N-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=80.97 E-value=8.8 Score=32.90 Aligned_cols=62 Identities=21% Similarity=0.340 Sum_probs=38.3
Q ss_pred cCCeEEecCCCCCHHHHHHHHHcCCCcEEEeCCCCc-cHHH-------HHHHHHHHHHcCCcEEEcccCchh
Q 014285 303 YGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLG-------TLQIIKATRKSGLHLMIDGMIETR 366 (427)
Q Consensus 303 ~~iPIa~dE~~~~~~~~~~ll~~~a~~~i~lk~~~~-Gi~~-------~~~~~~~A~~~gi~~~~~s~~es~ 366 (427)
.|+-|++|.--.+...+..+... .+|+|-+|.+.+ ++.. ...++.+|+..|+.++..+ +|+.
T Consensus 144 ~G~~lalddfG~~~~sl~~L~~l-~~d~IKld~s~i~~~~~~~~~~~~l~~l~~~a~~~~~~vIaeG-VE~~ 213 (261)
T d2basa1 144 YGIKIAVDNIGKESSNLDRIALL-SPDLLKIDLQALKVSQPSPSYEHVLYSISLLARKIGAALLYED-IEAN 213 (261)
T ss_dssp TTCEEEEEEETTTBCCHHHHHHH-CCSEEEEECTTTC----CCHHHHHHHHHHHHHHHHTCEEEEEC-CCSH
T ss_pred cCceeeecCCccCccchhHHhhh-hhhhhhcccccccccccchhhHHHHHHHHHHHHHcCCEEEEEe-CCcH
Confidence 45666666432333333333332 489999998765 2322 4567899999999999887 5664
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=80.32 E-value=10 Score=33.46 Aligned_cols=126 Identities=14% Similarity=0.077 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEec-------cC-------CchhhHHHHHHHHHh--CCCcE--EEEeCCCCCCHHHHHH
Q 014285 204 SPAEASELASKYCKLGFSTLKLNV-------GR-------NITADFDVLQAIHAV--HPHCS--FILDANEGYTSEEAVE 265 (427)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKi-------G~-------~~~~d~~~l~~ir~~--~~~~~--L~vDAN~~~s~~~A~~ 265 (427)
++..+.+.++++.+.|...+-+-= |. +.++-++++++..+. .|++- -|-||......++|++
T Consensus 91 ~~~~v~~~v~~~~~aGvagi~iEDq~~pk~~g~~~~~~~~~~~e~~~ki~aa~~a~~~~d~~IiARTDa~~~~g~~eAi~ 170 (289)
T d1muma_ 91 SAFNVARTVKSMIKAGAAGLHIEDQVGAKRCGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAIE 170 (289)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEECBCCCSSTTCCSCCCBCCHHHHHHHHHHHHHTCSSTTSEEEEEECCHHHHCHHHHHH
T ss_pred cchHHHHHHHHHHHCCCCEEEecCcccccccccccccceecHHHHHHHHHHHHHhcCCcchhheeccccccccCHHHHHH
Confidence 477888888899889988887742 21 345556677777663 46654 4889987777999999
Q ss_pred HHHHhhhCCCCCceEeCCCCCCChhhHHHHHHhhccccCCeEEecCCCCC-HHHHHHHHHcCCCcEEEeCC
Q 014285 266 VLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRS-LNDVQKVMQENLASVVNIKL 335 (427)
Q Consensus 266 ~l~~L~~~~l~~~~iEqP~~~~d~~~~~~L~~~~r~~~~iPIa~dE~~~~-~~~~~~ll~~~a~~~i~lk~ 335 (427)
.+++..+.|-...|+|-+ . +.+.++++++.+ ..++++...+.-.+ ..+++++-+. .+..+..-.
T Consensus 171 R~~aY~eAGAD~vf~~~~-~--~~~~~~~~~~~~--~~Pl~~~~~~~~~~p~~s~~eL~~~-Gv~~v~~~~ 235 (289)
T d1muma_ 171 RAQAYVEAGAEMLFPEAI-T--ELAMYRQFADAV--QVPILANITEFGATPLFTTDELRSA-HVAMALYPL 235 (289)
T ss_dssp HHHHHHHTTCSEEEETTC-C--CHHHHHHHHHHH--CSCBEEECCSSSSSCCCCHHHHHHT-TCSEEEESS
T ss_pred HHHHhhhcCCcEEEecCC-C--CHHHHHHHHHhc--CCCEEEeecCcCCCccchHHHHHHh-ccceEEech
Confidence 999999988664455544 2 567888888732 23444444442211 1133444444 366666544
|