Citrus Sinensis ID: 014317

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------
Protein Sequence
MTKRTRHKEEISEDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTNSLEFDASESLWNVGFGNLEQERSKYINWVNNVLELHRGSTINEFKVRFDLCDFHQSDITNWVYTVLGKRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYYGQAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIEPSRYVRKKVLRNCVKMLEAKVPHSVKLIVGSLYTD
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccccccHHHHHHHHHHccccEEEEEEccccccccccccccccccccccccccccccccEEEEEEEEEccccHHHHHHccccccEEEEEEcccccEEEEEEccccEEEEEEEEcccccEEEEEcccEEEEEEEEEEEEEEEcccccEEEEEEEccccccccccccccccccccccEEEEEcccEEEEEcccccccEEEEEEEEEEccccccHHHHHHHHHHcccccEEEEEEcccccccccccccccccccccccEEEEEEEEccHHHHHHHHHHHHcccccccEEEEccccccHHHHHHHHHHHHccccccEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHcccccEEEEEEEEEcccccHHHHHHHHHHHHHccccEEEEEEcccccccccccccHEEEcccccccccccHcHEEEEEEEEEEccHHHHHHHHcccHHHEEEEEEcccccEEEEEEEccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEcccccEEEEEEcccccccHHHHHHHHHHccccEEEEEcccccEHcccccccccHHHHEEEEEEccccccHHHHHHHHHccccccEEEEEccccccccccccccccccccccEEEEEEEcccccHHHHHHHHHHHHHcHHHEEEEEEccccccHHHHHHHHHHHcccccccEEEEEEEEccc
Coil and Loop (DISEMBL)
mtkrtrhkeEISEDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTNslefdaseslwnvgfgnleQERSKYINWVNNVLELHRGSTINEFKVRFDlcdfhqsditnWVYTVLGKRVQYikldlwpgryghyytfpkefynsiesgrglsgikflrCLHFKTVNVNGKDIELFIQncplldrlcvdhsktLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYYGQAIKINIENVPQLVDVSIRGSHTFRVTYfvgpiiscfpqlktleldscNEVYMQfslfelpklidlrlrvttpnreslLGLTCIMKACPFLQKLILQLNDHGrrlgkkrqqfpkyshqHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIEPSRYVRKKVLRNCVKMLEAKVPHSVKLIVGSLYTD
Flexible Loop (DISEMBL)
mtkrtrhkeeisedlinrlpddILVNIISHLTLKEAARTSVLSNRWRNLWTFTNSLEFDASESLWNVGFGNLEQERSKYINWVNNVLELHRGSTINEFKVRFDLCDFHQSDITNWVYTVLGKRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYYGQAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLfelpklidlRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEkliiepsryvRKKVLRNCVKmleakvphsvklivgslytd
Low Complexity Region (SEG)
MTKRTRHKEEISEDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTNSLEFDASESLWNVGFGNLEQERSKYINWVNNVLELHRGSTINEFKVRFDLCDFHQSDITNWVYTVLGKRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYYGQAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIEPSRYVRKKVLRNCVKMLEAKVPHSVKLIVGSLYTD
Disordered region (IsUnstruct)
**************LINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTNSLEFDASESLWNVGFGNLEQERSKYINWVNNVLELHRGSTINEFKVRFDLCDFHQSDITNWVYTVLGKRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYYGQAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIEPSRYVRKKVLRNCVKMLEAKVPHSVKLIVGSLY**
Disordered Region (DISOPRED)
*****************RLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTNSLEFDASESLWNVGFGNLEQERSKYINWVNNVLELHRGSTINEFKVRFDLCDFHQSDITNWVYTVLGKRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYYGQAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIEPSRYVRKKV***************VKLIVGSLY**
Disordered Region (DISEMBL)
***********SEDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTNSLEFDASESLWNVGFGNLEQERSKYINWVNNVLELHRGSTINEFKVRFDLCDFHQSDITNWVYTVLGKRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYYGQAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIEPSRYVRKKVLRNCVKMLEAKVPHSVKLIVGSLYTD
Disordered Region (DISPRO)
*************DLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTNSLEFDASESLWNVGFGNLEQERSKYINWVNNVLELHRGSTINEFKVRFDLCDFHQSDITNWVYTVLGKRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYYGQAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIEPSRYVRKKVLRNCVKMLEAKVPHSVKLIVGSLYTD
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTKRTRHKEEISEDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTNSLEFDASESLWNVGFGNLEQERSKYINWVNNVLELHRGSTINEFKVRFDLCDFHQSDITNWVYTVLGKRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYYGQAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIEPSRYVRKKVLRNCVKMLEAKVPHSVKLIVGSLYTD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	427	2.2.26 [Sep-21-2011]
Q0WR05	457	F-box/LRR-repeat protein	no	no	0.522	0.487	0.290	1e-17
Q9FFW2	410	FBD-associated F-box prot	no	no	0.885	0.921	0.253	5e-17
Q9FWZ1	451	F-box/LRR-repeat protein	no	no	0.899	0.851	0.243	6e-17
Q9SV82	409	FBD-associated F-box prot	no	no	0.829	0.865	0.265	7e-17
Q9FGQ3	444	F-box/FBD/LRR-repeat prot	no	no	0.882	0.849	0.242	2e-16
Q6DBN6	435	F-box/FBD/LRR-repeat prot	no	no	0.850	0.834	0.239	2e-15
Q9LXR4	454	Putative F-box/LRR-repeat	no	no	0.393	0.370	0.345	1e-14
Q9ZV94	452	Putative F-box/FBD/LRR-re	no	no	0.810	0.765	0.214	3e-14
Q9ZV93	458	F-box/FBD/LRR-repeat prot	no	no	0.913	0.851	0.237	4e-14
Q9C8Y6	442	FBD-associated F-box prot	no	no	0.880	0.850	0.254	4e-14

>sp|Q0WR05|FBL39_ARATH F-box/LRR-repeat protein At2g42730 OS=Arabidopsis thaliana GN=At2g42730 PE=2 SV=1

 Score = 91.3 bits (225), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 124/244 (50%), Gaps = 21/244 (8%)

Query: 12  SEDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTNSLEFDASESLWNVGFGN 71
           ++D+I+RLPD++L  I+S ++ KEA  TSVLS RW+N++   ++L+ D  +S+       
Sbjct: 3   AKDVISRLPDEVLGRILSLISTKEAVSTSVLSKRWKNMFVLVSNLDIDDRQSVPKTKQNR 62

Query: 72  LEQERSKYINWVNNVLELHRGSTINEFKVRFDLCDFHQSD---ITNWVYTVLGKRVQYIK 128
           +E  R+ Y+ +V+ +L+  RGS+I +  ++  +     +D   I +W+  VL   V  + 
Sbjct: 63  IEIHRN-YMAFVDKLLDTQRGSSIKKLTLKSHVGVRGGTDSSRIQSWICNVLDHGV--MD 119

Query: 129 LDLWPGRYGHYYTFPKEFYNS-----IESGRGLS-------GIKFLRCLHFKTVN-VNGK 175
           LD++    G     P   + S     +  GRG +        +  LR L   +VN V G 
Sbjct: 120 LDVFITLKGKSPPVPAMIFKSKTLVKLRVGRGFTIKLSQDVSLPLLRTLCLDSVNFVGGH 179

Query: 176 D-IELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSF 234
           + +   I  CP+L+ L V+  +  V      SS  LK L I+       I + AP+L+ +
Sbjct: 180 NVVGTLISRCPVLEELVVEERRC-VDWTCSVSSPSLKRLHIRFDRKFTSISLDAPNLIYY 238

Query: 235 RYYG 238
           ++ G
Sbjct: 239 KHSG 242

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFW2|FBD17_ARATH FBD-associated F-box protein At5g38590 OS=Arabidopsis thaliana GN=At5g38590 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 110/434 (25%), Positives = 185/434 (42%), Gaps = 56/434 (12%)

Query: 14  DLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTNSLEFDASESLWNVGFGNLE 73
           D IN LPDD+LV I+S++    A  TS+LS RW  LW +  +L++    S W    G++ 
Sbjct: 2   DKINGLPDDLLVKILSYVPTDIAVSTSILSKRWEFLWMWLPNLDY---TSRWCRKPGDVG 58

Query: 74  QERSKYINWVNNVLELHRGSTINEFKVRFDLCDFHQSDITNWVYTVLGKRVQYIKLDLWP 133
                  ++++  L LHR   I   +   +  D    DI  W+   + + V  + +D   
Sbjct: 59  LR-----DFIHKNLPLHRAPVIESLRFHSNSPDIKPEDIRRWIEIAVSRHVHDLDID--- 110

Query: 134 GRYGHYYTFPKEFYNSIESGRGLSGIKF----------------LRCLHFKTVN-VNGKD 176
               H+      F +S  + + L  +K                 L+ L    V+ V GK 
Sbjct: 111 ----HFSENENIFLSSFFACKSLVTLKLRSVTLRDIPSMVCLPSLKTLLLDNVSFVEGKS 166

Query: 177 IELFIQNCPLLDRL---CVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSL-- 231
           ++  +  CP+L+ L   C D+  T     V+ S + L  L I   +L++   I  PSL  
Sbjct: 167 LQELLSICPVLEDLSVYCDDYENTKELTIVVPSLLSLS-LYIPDEWLLDGYWIDTPSLEY 225

Query: 232 LSFRYYGQAIKIN-IENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY 290
           L    +     ++ I+N+P+L     R ++     +    +I     +K L + S  + Y
Sbjct: 226 LKLEDWNSCDHLSLIKNMPKL-----REAYVDAKCFLPKSVIESITSVKHLTICS-KDGY 279

Query: 291 MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKL-ILQLNDHGRRLG----- 344
               +F   +L  L L V   +  SLLG   ++K  P L+ L I  + DH   +G     
Sbjct: 280 GDGFVFN--QLEHLTLCVCRGDSPSLLGQ--LLKDSPNLRILEISVMEDHVDDVGISLDG 335

Query: 345 -KKRQQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIEPSRYVRKKVLR 403
             +    P+     L++ +   +LGR  D ++A Y+ +NA  L+K  I   R  R    R
Sbjct: 336 WNQPSSVPECLLSSLQIFKWPQYLGRPEDRDIAVYILKNARHLKKTTILADRCERFVTQR 395

Query: 404 NCVKMLEAKVPHSV 417
             +K L   +P  +
Sbjct: 396 RMIKELLQALPARI 409

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FWZ1|FBL13_ARATH F-box/LRR-repeat protein 13 OS=Arabidopsis thaliana GN=FBL13 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 106/436 (24%), Positives = 195/436 (44%), Gaps = 52/436 (11%)

Query: 3   KRTRHKEEISEDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTNSLEFDASE 62
           K  R K     D I++LPD +L  ++ +L  K+  +TSVLS RWRNLW     L+ D   
Sbjct: 7   KHVRAKGSDEVDWISKLPDCLLCEVLLNLPTKDVVKTSVLSRRWRNLWKHVPGLDLD--- 63

Query: 63  SLWNVGFGNLEQERSKYINWVNNVLELHRGSTINEFKVRFDLCDFHQSDI---TNWVYTV 119
              N  F    QE + ++++V++ L+ +  S + +F +++D  D +  DI     W+ T+
Sbjct: 64  ---NTDF----QEFNTFLSFVDSFLDFNSESFLQKFILKYDCDDEYDPDIFLIGRWINTI 116

Query: 120 LGKRVQYIKLDLWPGRYGHY-YTFPKEFYNSIES-------GRGLSGIKFLRCLHFKTVN 171
           + ++VQ+I  D+    YG +    P   Y + ES       G  L+  +F+     K ++
Sbjct: 117 VTRKVQHI--DVLDDSYGSWEVQLPSSIY-TCESLVSLKLCGLTLASPEFVSLPSLKVMD 173

Query: 172 V------NGKDIELFIQNCPLLDRLCVDHS--KTLVRLRVIGSSIQLKYLEIQSCY--LM 221
           +      +   +E  I  CP+L+ L ++ S    +  LRV   S+ L++  +      ++
Sbjct: 174 LIITKFADDMGLETLITKCPVLESLTIERSFCDEIEVLRVRSQSL-LRFTHVADSDEGVV 232

Query: 222 EE--IEISAPSLLSFRYY------------GQAIKINIENVPQLVDVSIRGSHTFRVTYF 267
           E+  + I AP L   R              G+ +K +I+ V  L  V+            
Sbjct: 233 EDLVVSIDAPKLEYLRLSDHRVASFILNKPGKLVKADIDIVFNLSSVNKFNPDDLPKRTM 292

Query: 268 VGPIISCFPQLKTLELDSCN-EVYMQFSLFE-LPKLIDLRLRVTTPNRESLLGLTCIMKA 325
           +   +     +K + + S   EV   FS  E LP   +L +            L   +++
Sbjct: 293 IRNFLLGISTIKDMIIFSSTLEVIYDFSRCERLPLFRNLSVLCVEFYGYMWEMLPIFLES 352

Query: 326 CPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFL-GRQFDVELAQYLFQNAT 384
           CP L+ L+++   +  +        P+     L+ V++   L G   +++L  YL +N+T
Sbjct: 353 CPNLKTLVVKSASYQEKGENIILPGPRRFLSSLEYVKIERPLKGEAMEMKLVSYLLENST 412

Query: 385 MLEKLIIEPSRYVRKK 400
           +L+KL +     V+K+
Sbjct: 413 ILKKLTLCLDDSVKKE 428

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SV82|FBD40_ARATH FBD-associated F-box protein At4g10400 OS=Arabidopsis thaliana GN=At4g10400 PE=2 SV=2

 Score = 89.0 bits (219), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 107/403 (26%), Positives = 169/403 (41%), Gaps = 49/403 (12%)

Query: 14  DLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTNSLEFDASESLWNVGFGNLE 73
           D I+ LPD++LV I+S +  K A  TS+LS RW  LW +   L+F +            E
Sbjct: 2   DRISGLPDEVLVKILSFVPTKVAVSTSILSKRWEFLWMWLTKLKFGSKR--------YSE 53

Query: 74  QERSKYINWVNNVLELHRGSTINEFKVRFDLCDFHQSDITNWVYTVLGKRVQYIKLDLWP 133
            E  +   +++  L LHR   I  F++      F   DI  WV   + + ++ +K  ++ 
Sbjct: 54  SEFKRLQCFLDRNLPLHRAPVIESFRLVLSDSHFKPEDIRMWVVVAVSRYIRELK--IYS 111

Query: 134 GRYGHYYT-FPKEFYNSIE------SGRGLSGIKFLRCL-HFKTVNVNG------KDIEL 179
             YG      P   Y           G  L  +  + CL   KT+ + G        ++ 
Sbjct: 112 SHYGEKQNILPSSLYTCKSLVILKLDGGVLLDVPRMVCLPSLKTLELKGVRYFKQGSLQR 171

Query: 180 FIQNCPLLDRLCVD--HSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYY 237
            + NCP+L+ L V+  H   + +L VI  S+Q   L   S     E  I  PSLLSF+  
Sbjct: 172 LLCNCPVLEDLVVNLSHHDNMGKLTVIVPSLQRLSLSTPSS---REFVIDTPSLLSFQLV 228

Query: 238 GQ---AIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYMQFS 294
            +   +    IEN+P+L +  I       +   +G I S    +K L + S       F 
Sbjct: 229 DRNDNSHTFLIENMPKLREAYINVPFA-DIKSLIGSITS----VKRLAISSEVGYGEGFI 283

Query: 295 LFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLIL--QLNDH---GRRLGKKRQQ 349
              L +L       T  N+ S   L   +K  P L++L+L  + +DH   G     +   
Sbjct: 284 FNHLEEL-------TLWNKYSSNLLVWFLKNSPNLRELMLVSETDDHENLGMLSWNQPSI 336

Query: 350 FPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIE 392
            P+     L+      +LGR  D ++A Y+ +NA  L    I+
Sbjct: 337 VPECMLSSLQKFTWFKYLGRPQDRDIAVYILKNACRLRTATIK 379

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGQ3|FDL37_ARATH F-box/FBD/LRR-repeat protein At5g53840 OS=Arabidopsis thaliana GN=At5g53840 PE=2 SV=1

 Score = 87.4 bits (215), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 106/438 (24%), Positives = 200/438 (45%), Gaps = 61/438 (13%)

Query: 13  EDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTNSLEFDASESLWNVGFGNL 72
           E+ +++LPD ++  I+SHL+ K+A RTS+LS RWRNLW     L+FD+ E          
Sbjct: 17  EERLSQLPDHLICVILSHLSTKDAVRTSILSTRWRNLWQLVPVLDFDSREL--------- 67

Query: 73  EQERSKYINWVNNVLELHRGSTINEFKV-RFDLCDFHQSDITNWVYTVLGKRVQYIKLDL 131
            +  S+++++  +   LH+ S I + +V  +DL   +   +T+W+  V   R+Q+I + +
Sbjct: 68  -RSFSEFVSFAGSFFYLHKDSYIQKLRVCIYDLAGNYY--LTSWIDLVTRHRIQHIDISV 124

Query: 132 WPGRYGHYYTFPKEFYNSIE------SGRGLSGIKF-----LRCLHFKTVN-VNGKDIEL 179
           +      +   P   Y          S   +  ++F     L+ L    VN  N   ++ 
Sbjct: 125 FTC--SGFGVIPLSLYTCDTLVHLKLSRVTMVNVEFVSLPCLKILDLDFVNFTNETTLDK 182

Query: 180 FIQNCPLLDRLC-VDHSKTLVRLRVIGSSIQLKYLEIQSCY-----------LMEEIEIS 227
            I   P+L+ L  V  S+  V++  + S   LK +EI   +           L++ + I 
Sbjct: 183 IISCSPVLEELTIVKSSEDNVKIIQVRSQ-TLKRVEIHRRFDRHNGLVIDTPLLQFLSIK 241

Query: 228 APSLLSFRYYGQAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLEL--DS 285
           A S+ S  +        ++    L+D +   + +    +F     +   ++++L +   +
Sbjct: 242 AHSIKSIEFINLGFTTKVDIDVNLLDPNDLSNRSMTRDFF-----TTISRVRSLVIRHGT 296

Query: 286 CNEVYMQFSLFELPK---LIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRR 342
             +++    L  L +   L +L    +  N E LL L   +K+CP L+ L L+L D+ + 
Sbjct: 297 IKDIFHYMELEPLQQFCYLSELSAVCSISNLEMLLNL---LKSCPKLESLSLKLVDYEK- 352

Query: 343 LGKKRQQF-----PKYSHQHLKVVELHG-FLGRQFDVELAQYLFQNATMLEKLIIEPSRY 396
             KK +       P      LK V+L    LG   ++++A+Y  +N+T+LEKL ++    
Sbjct: 353 -NKKEEVMSSTVPPPCLVSSLKFVKLESQLLGCGTELKVARYFLENSTILEKLTLKIDYM 411

Query: 397 VRKKVLRNCVKMLEAKVP 414
            + +   N ++     VP
Sbjct: 412 YKDEANVNHIRQTLHAVP 429

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DBN6|FDL6_ARATH F-box/FBD/LRR-repeat protein At1g51370 OS=Arabidopsis thaliana GN=At1g51370 PE=2 SV=1

 Score = 84.0 bits (206), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 101/421 (23%), Positives = 190/421 (45%), Gaps = 58/421 (13%)

Query: 3   KRTRHKEEIS--EDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTNSLEFDA 60
           K+T+  +++S  ED I++LP+ ++  I+ HL+ K++ RTS LS +WR LW     L+ D 
Sbjct: 6   KKTKICDKVSHEEDRISQLPEPLISEILFHLSTKDSVRTSALSTKWRYLWQSVPGLDLDP 65

Query: 61  SESLWNVGFGNLEQERSKYINWVNNVLELHRGSTINEFKVRFDLCDFHQS-DITNWVYTV 119
             S             +  +++V +  + HR S I   K+R DL   H   D+ +W+   
Sbjct: 66  YAS----------SNTNTIVSFVESFFDSHRDSWIR--KLRLDLGYHHDKYDLMSWIDAA 113

Query: 120 LGKRVQYIKLDLWPGRYGHYYTFPKEFYN-----------SIESGRGLSGIKFLRCLHFK 168
             +R+Q++ +  +     H    P   Y            ++ +      +  L+ +HF+
Sbjct: 114 TTRRIQHLDVHCF-----HDNKIPLSIYTCTTLVHLRLRWAVLTNPEFVSLPCLKIMHFE 168

Query: 169 TVNV-NGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIE-- 225
            V+  N   ++  I   P+L+ L +        +   G+ +QL+   ++   + E I+  
Sbjct: 169 NVSYPNETTLQKLISGSPVLEELIL-----FSTMYPKGNVLQLRSDTLKRLDINEFIDVV 223

Query: 226 ISAPSLLSFR---YYGQAIKINIENVPQLVDVS-IRGSHTFRVTYFVGPIISCFPQLKTL 281
           I AP L   R   Y  +  +I     P  +D+  +     ++    +  I+    +++ L
Sbjct: 224 IYAPLLQCLRAKMYSTKNFQIISSGFPAKLDIDFVNTGGRYQKKKVIEDILIDISRVRDL 283

Query: 282 ELDSCNEVYMQFSLFELPK-LIDLRLRVTTPNR---ESLLGLTCIMKACPFLQKLILQL- 336
            + S    + +F L+   + L+  R       R     L  L  ++++CP L+ LIL++ 
Sbjct: 284 VISS--NTWKEFFLYSKSRPLLQFRYISHLNARFYISDLEMLPTLLESCPKLESLILEMV 341

Query: 337 -NDHGRRLGKKRQ------QFPKYSHQHLKVVELHGFLGR-QFDVELAQYLFQNATMLEK 388
            N   RR G+KR+        P      LK VEL   + R + ++EL +Y+  N+T+L+K
Sbjct: 342 KNQSTRRHGEKREPNVMVSTVPWCLVSSLKFVELKRSIPRYEGEMELVRYVLTNSTVLKK 401

Query: 389 L 389
           L
Sbjct: 402 L 402

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXR4|FBL56_ARATH Putative F-box/LRR-repeat protein At3g58880 OS=Arabidopsis thaliana GN=At3g58880 PE=4 SV=1

 Score = 81.6 bits (200), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/197 (34%), Positives = 96/197 (48%), Gaps = 29/197 (14%)

Query: 14  DLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTNSLEFDASESL-WNVGFGNL 72
           DL++ LPDD+L +I+S LT KEAA TS+LS RWR L  F   LEFD S  L    G    
Sbjct: 3   DLVSSLPDDLLGHILSLLTTKEAALTSILSKRWRYLIAFVPYLEFDDSAFLNPEEGKQTR 62

Query: 73  EQERSKYINWVNNVLELHRGSTINEF----KVRFDLCDFHQSDITN-WVYTVLGKRVQYI 127
           E  R  +I++V+ VL LH  S I +F    K   DL      D+ N W+  VL + V  I
Sbjct: 63  EGTRQSFIDFVDRVLALHGDSPIRKFSLKCKTGVDL------DLLNQWICNVLQRGVLLI 116

Query: 128 KLDLWPGRYGHYYTFPKEFYN----SIESGRG---------LSGIKFLRCLHFKTVN-VN 173
            L +     GH   F + F +     ++ G G         +S +  L+ L   +V+  +
Sbjct: 117 DLSM---DLGHRCMFIEIFMSRTLVELKLGSGCRIAFGPEHISALPMLKTLTLDSVSWSD 173

Query: 174 GKDIELFIQNCPLLDRL 190
              +E  +  CP L+ L
Sbjct: 174 SGQLERLLSACPALEAL 190

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZV94|FDL11_ARATH Putative F-box/FBD/LRR-repeat protein At1g78760 OS=Arabidopsis thaliana GN=At1g78760 PE=4 SV=1

 Score = 80.5 bits (197), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 95/443 (21%), Positives = 181/443 (40%), Gaps = 97/443 (21%)

Query: 3   KRTRHKEEISEDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTNSLEFDASE 62
           KR R  EE   D ++ LP+ ++  I+ ++  K+  ++SVLS RWRNLW +   L  + ++
Sbjct: 8   KRARRSEE---DRLSNLPESLICQIMLNIPTKDVVKSSVLSKRWRNLWRYVPGLNVEYNQ 64

Query: 63  SLWNVGFGNLEQERSKYINWVNNVLELHRGSTINEFKVRFDLCDFHQSDITN---WVYTV 119
            L          + + ++++V+  L L R S    F++R+D CD  +  I+N   W+  V
Sbjct: 65  FL----------DYNAFVSFVDRFLALDRESCFQSFRLRYD-CDEEERTISNVKRWINIV 113

Query: 120 LGKRVQYI----------KLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKT 169
           + ++++ +          ++ + P  Y        +  N I     +  +  ++ +    
Sbjct: 114 VDQKLKVLDVLDYTWGNEEVQIPPSVYTCESLVSLKLCNVILPNPKVISLPLVKVIELDI 173

Query: 170 VNV-NGKDIELFIQNCPLLDRLCVDHSKT--LVRLRVIGSSIQLKYLEIQSC---YLMEE 223
           V   N   +E  I +C  L+ L +  S    +  LRV   S+ L +  I +C   +   E
Sbjct: 174 VKFSNALVLEKIISSCSALESLIISRSSVDDINVLRVSSRSL-LSFKHIGNCSDGWDELE 232

Query: 224 IEISAPSL--LSFRYYGQA----------------IKINIENVPQLVDVSIR-------- 257
           + I AP L  L+   +  A                I  N+E +P   D   R        
Sbjct: 233 VAIDAPKLEYLNISDHSTAKFKMKNSGSLVEAKINIIFNMEELPHPNDRPKRKMIQDFLA 292

Query: 258 ----------GSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLR 307
                      SHT  V + +G  +  F  L +L +D           FE          
Sbjct: 293 EISSVKKLFISSHTLEVIHDLGCELPLFRNLSSLHID-----------FE---------- 331

Query: 308 VTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELH-GF 366
                  +L  L+  +++CP ++ L+++  D  +  G +    P+     L+ V++    
Sbjct: 332 -----DHTLKMLSTFLQSCPNVKSLVVEFKDSSKEDGDRVLSIPRCFFTTLEYVKIERPI 386

Query: 367 LGRQFDVELAQYLFQNATMLEKL 389
            G    +++  Y+ +N+ +L+KL
Sbjct: 387 TGEARGMKVVSYILENSPILKKL 409

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZV93|FDL10_ARATH F-box/FBD/LRR-repeat protein At1g78750 OS=Arabidopsis thaliana GN=At1g78750 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 104/437 (23%), Positives = 188/437 (43%), Gaps = 47/437 (10%)

Query: 3   KRTRHKEEISEDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTNSLEFDASE 62
           KR R K     D I+ LP+ +L  ++ +L  K+  ++SVLS+RWRNLW +     F+ S 
Sbjct: 7   KRVRAKGSREVDWISNLPETLLCQVLFYLPTKDVVKSSVLSSRWRNLWKYVPG--FNLSY 64

Query: 63  SLWNVGFGNLEQERSKYINWVNNVLELHRGSTINEFKVRFDLCDFHQSD---ITNWVYTV 119
             ++V       + + ++ +V++ +  +  S +  F++ +D   + +     I  W+ +V
Sbjct: 65  CDFHVR-NTFSYDHNTFLRFVDSFMGFNSQSCLQSFRLEYDSSGYGEPKLALIRRWINSV 123

Query: 120 LGKRVQYIKLDLWPGRYGHYYTFPKEFYNS------IESGRGLSGIKF-----LRCLHFK 168
           + ++V+Y+ + L      + +  P   Y           G  L+  KF     L+ LH  
Sbjct: 124 VSRKVKYLGV-LDDSCDNYEFEMPPTLYTCETLVYLTLDGLSLASPKFVSLPSLKELHLS 182

Query: 169 TVN-VNGKDIELFIQNCPLLDRL------CVDHSKTLVRLRVIGSSIQLKYLEIQSCYLM 221
            V   +   +E  I  CP+L+ L      C D   T VR +   S +   ++      L 
Sbjct: 183 IVKFADHMALETLISQCPVLENLNINRSFCDDFEFTCVRSQ---SLLSFTHVADTDEMLN 239

Query: 222 EE--IEISAPSLLSFRYYGQAIKINIEN-VPQLVDVSIRGSHTFRVTYFVGP-------- 270
           E+  + I AP L   R     I   I N +  LV+  I             P        
Sbjct: 240 EDLVVAIDAPKLKYLRLSDHRIASFILNDLASLVEADIDTVFNLICKKMFNPNDLNKRNM 299

Query: 271 ---IISCFPQLKTLELDSCN-EVYMQFSLFE-LPKLIDL-RLRVTTPNRESLLGLTCIMK 324
               +     +KTL + S   EV   +S  E LP   +L  LRV     +  + L   ++
Sbjct: 300 IRDFLVGISSIKTLIIASSTLEVIYDYSRCEPLPLFRNLSSLRVDFYGYKWEM-LPIFLE 358

Query: 325 ACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFL-GRQFDVELAQYLFQNA 383
           +CP L+ L++   ++  + G      P+     L+ V++   L G   +++L  YL +N+
Sbjct: 359 SCPNLKSLVVGSANYREKEGINILSVPRGFLSSLEYVKIERPLKGEAMEMKLVSYLLENS 418

Query: 384 TMLEKLIIEPSRYVRKK 400
           T+L+KL +     ++K+
Sbjct: 419 TILKKLTLCLDDSIKKE 435

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8Y6|FBD5_ARATH FBD-associated F-box protein At1g66310 OS=Arabidopsis thaliana GN=At1g66310 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 112/440 (25%), Positives = 191/440 (43%), Gaps = 64/440 (14%)

Query: 3   KRTRHKEEISE-DLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTNSLEFDAS 61
           KR R K+   E D +  LP+ +L +I+ +L  K+  +TSVLS++WRNLW     L+ D+S
Sbjct: 7   KRVRAKQSDDEVDWLRDLPESLLCHILLNLPTKDVVKTSVLSSKWRNLWRLVPGLDLDSS 66

Query: 62  ESLWNVGFGNLEQERSKYINWVNNVLELHRGSTINEFKVRFDLCDFH------QSDITNW 115
           +            E + ++++++  +  H    + +FK+RF  C+ +       + I  W
Sbjct: 67  DF----------TENNTFVSFIDRFMSFHSDLYLKKFKLRF-FCNLNGDEVSENAHIARW 115

Query: 116 VYTVLGKRVQYIKLDLWPGRYGHYYTFPKEFY--NSIES----GRGLSGIKF--LRCLHF 167
           +  V+ ++V    LDL  G        P   Y  NS+ S    G  L  ++   L C+  
Sbjct: 116 INDVVKRKVH--NLDLTWGA----VEIPPILYLCNSLVSLKLCGVTLPNLELTSLPCVKV 169

Query: 168 KTVN----VNGKDIELFIQNCPLLDR--LCVDHSKTLVRLRVIGSSIQLKYLEIQSCY-- 219
             +      N   +E+ I  C +L+   LC   +  +  LRV   S+ L++    S Y  
Sbjct: 170 IVLEWVKFANDLALEMLISGCLVLESLTLCRRPNDNVKILRVSSQSL-LRFSYNGSSYKG 228

Query: 220 LMEE--IEISAPSLLSFRYYGQAIKIN-IENVPQLV---DVSIRGSHTFRVTYFVGPIIS 273
           L ++  +EI+AP L   + +   +  + I N    +   D++I     F         + 
Sbjct: 229 LHDDLVLEINAPKLKILKLFSHQLTTSFIRNTSSSIVEADINIGLGKKFDPKDLPKRNVI 288

Query: 274 C-----FPQLKTLELDSCN-EVYMQFSLFE-LPKLIDLRLRVTTPNRESLLGLTCIMKAC 326
           C        +K L +  C  EV   +S  E LP   +L          S   L   +++C
Sbjct: 289 CNFLAGISSVKNLFIAPCTLEVIYDYSRCEPLPLFCNLSYLSVDFYNNSWEILPIFLESC 348

Query: 327 PFLQKLILQLNDHGRRLGKKRQ----QFPKYSHQHLKVVELHGFL-GRQFDVELAQYLFQ 381
           P L+ L++     G     KR+      P+     L+ VE+   L G  F+++L  YL +
Sbjct: 349 PNLKSLVV-----GSITSPKRRTSVLSGPRRLLSSLEYVEIESPLTGEVFEMKLVSYLLE 403

Query: 382 NATMLEKLIIEPSRYVRKKV 401
           N+ +L+KL I      RKK 
Sbjct: 404 NSPILKKLTINLDDSSRKKA 423

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	427
449440973	475	PREDICTED: putative FBD-associated F-box	0.878	0.789	0.357	2e-56
255544812	464	ubiquitin-protein ligase, putative [Rici	0.871	0.801	0.370	6e-56
255540581	457	ubiquitin-protein ligase, putative [Rici	0.918	0.857	0.363	6e-55
302142991	402	unnamed protein product [Vitis vinifera]	0.768	0.815	0.356	5e-45
357477131	447	F-box family-6 [Medicago truncatula] gi|	0.875	0.836	0.337	1e-44
147865783	1789	hypothetical protein VITISV_020815 [Viti	0.880	0.210	0.303	9e-38
297736820	487	unnamed protein product [Vitis vinifera]	0.875	0.767	0.304	1e-37
357155585	449	PREDICTED: LOW QUALITY PROTEIN: putative	0.871	0.828	0.277	5e-34
356544606	444	PREDICTED: putative F-box protein At3g58	0.946	0.909	0.292	1e-32
357119372	497	PREDICTED: uncharacterized protein LOC10	0.880	0.756	0.252	1e-29

>gi|449440973|ref|XP_004138258.1| PREDICTED: putative FBD-associated F-box protein At5g56700-like [Cucumis sativus] gi|449501454|ref|XP_004161371.1| PREDICTED: putative FBD-associated F-box protein At5g56700-like [Cucumis sativus]

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 142/397 (35%), Positives = 222/397 (55%), Gaps = 22/397 (5%)

Query: 12  SEDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTNSLEFDASESLWNVGFG- 70
           S D I+ LP DILV I+S L LKEAARTS LS++WR LW+F   L FDA + L ++ F  
Sbjct: 43  SVDSISHLPQDILVFILSLLPLKEAARTSTLSHKWRCLWSFIPCLNFDAHKKLLDLQFTD 102

Query: 71  -NLEQERSKYINWVNNVLELHRGSTINEFKVRFDLCDFHQSDITNWVYTVLGKRVQYIKL 129
            NL+ ER +++ WVN V++ ++GS +   ++RF+L    Q D+  WV   +  +++  +L
Sbjct: 103 ENLKSERRQFVKWVNRVIDSYKGSNLETLRIRFNLDSSFQCDVDRWVQFAMQWKLKMFEL 162

Query: 130 DLW---------PGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVNGKDIELF 180
           +L          P  +      PKE +         S    L+ L    VNV G+ +E F
Sbjct: 163 NLSDSYDSGIYSPCSFPQLSDGPKENFPRF----MFSNSSSLKTLKLIAVNVGGEALECF 218

Query: 181 IQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYYGQA 240
           + N PLL+ L V++S  L+ LRV+G+S++L+ LE+  C  +E +E+SAP+L SF+Y G  
Sbjct: 219 LTNSPLLEILVVEYSHCLLSLRVVGASLKLRQLEVCMCNYLESLEVSAPNLESFKYVGPW 278

Query: 241 IKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEV-YMQFSLFE-- 297
           + + ++N P+L++          +      + S   QL+ L LD   EV +M+   F   
Sbjct: 279 LSMPLKNTPKLLETYFGSEFGVEIIDHFFLLSSYSSQLQKLILDL--EVDFMENQGFRKW 336

Query: 298 --LPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSH 355
             L  L +L+L V      SL+G T ++KA P L K  L+L+       +  ++  K+ H
Sbjct: 337 PILANLKELKLIVIAEGHSSLIGFTSLIKASPSLLKFTLKLDYLDMFEQRPLRKVKKFPH 396

Query: 356 QHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIE 392
           Q++KVVEL GF+G+  D+EL QY  +NA  LE++I +
Sbjct: 397 QYIKVVELAGFVGKPIDLELVQYFHKNAVALEEIIFD 433

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544812|ref|XP_002513467.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223547375|gb|EEF48870.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  224 bits (571), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 149/402 (37%), Positives = 226/402 (56%), Gaps = 30/402 (7%)

Query: 11  ISEDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTF-TNSLEFDASESLW---- 65
           ISE  I++LP+D+L+NI+S LT+KEAARTS+LS RWR+LWT+ T  ++FDAS ++W    
Sbjct: 31  ISEH-ISQLPEDVLLNILSRLTMKEAARTSILSTRWRHLWTYYTGIMDFDASLTMWYLQL 89

Query: 66  NVGFGNLEQERSKYINWVNNVLELHRGSTINEFKVRFDLCDFHQSDITNWVYTVLGKRVQ 125
            +G  +L+ ER  +++WVN VL  H G T+   ++ FDL      +I +W+   + KRV+
Sbjct: 90  GLGSKSLDMERHSFVSWVNQVLRSHEGPTMEGLRICFDLDSDFMYEIDSWITIAMQKRVK 149

Query: 126 YIKLDLW---PG-RYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVNGKDIE-LF 180
            +++DL    P  +    Y FP    N        S    L+ L    V+V G+ ++ L 
Sbjct: 150 RLEIDLTNIEPSIKTTGSYAFPSGLLND-------SSFSSLKTLQLNMVDVTGEALQHLL 202

Query: 181 IQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYYGQA 240
           +  CPLL+ L + +S +LV L+V GSS++LKYLE+  C  ++ +EI+A SL+SF+YYG  
Sbjct: 203 LSWCPLLEVLSIVNSTSLVSLKVSGSSLKLKYLEMVCCNNLKYLEITAASLVSFKYYGPL 262

Query: 241 IKINIENVPQLVDVSIRGSH---TFRVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFE 297
           I +  ++VP LVD S  G     T    Y     I    QL+TL  D  +   M+     
Sbjct: 263 IGLPFKSVPNLVDASFGGPFCQLTIENLYQFSLYIL---QLETLRFDVGSAYLMREFPTN 319

Query: 298 LPKLIDLR-LRVTTPNRE---SLLGLTCIMKACPFLQKLILQ-LNDHGRRLGKKRQQFPK 352
            P L +++ L VTT        L     ++K CP L +  L+ ++     + +  Q+ P+
Sbjct: 320 FPILSNVKHLEVTTAVSAVAHCLFPCLSLLKGCPLLHRFTLKVISCESTLVCRASQKVPE 379

Query: 353 -YSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIEP 393
            +SH  LKVVE+ GF G   +VEL  Y  +NA +L+ LII P
Sbjct: 380 DHSHPCLKVVEVLGFQGNAAEVELVLYFLRNAAVLKNLIISP 421

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540581|ref|XP_002511355.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223550470|gb|EEF51957.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  221 bits (563), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 153/421 (36%), Positives = 232/421 (55%), Gaps = 29/421 (6%)

Query: 1   MTKRTRHK-----EEISEDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTNS 55
           M KR +H      EE  ED I+ LP++IL +I+S LT +EA+RTSVLS RWR LWT T+S
Sbjct: 1   MAKRFQHSSVTSVEEAKEDRISHLPEEILTSILSFLTTEEASRTSVLSRRWRILWTLTSS 60

Query: 56  LEFDASESLWNVGFGN---LEQERSKYINWVNNVLELHRGSTINEFKVRFDLCDFHQSDI 112
           L FD ++        +   L  ER+++  WV  VLE+++ S ++EF V FDL    +  +
Sbjct: 61  LNFDCTKIALGKKLDDRFALRSERTRFAMWVKRVLEVYKDSNLDEFIVSFDLTCNSRRSL 120

Query: 113 TNWVYTVLGKRVQYIKLDLWPGRYGHY------YTFPKEFYNSIESGRGLSGIKFLRCLH 166
             W+   + K ++ +++ L P     +      Y+FP + Y+ I    GLS I  LR L 
Sbjct: 121 DKWMNFAMSKTLKRLEISLAPFSSRKFRFHDECYSFPVDCYSFIRGPEGLSNISSLRSLC 180

Query: 167 FKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEI 226
            + VN+ G+ +E F+ NCPLL++L V  +  L  L+V  SS++LKYLEI  CY ++  EI
Sbjct: 181 LRYVNMTGEVVEHFLLNCPLLEQLTVAVAYRLESLKVPASSLRLKYLEIFDCYHLKNFEI 240

Query: 227 SAPSLLSF------RYYGQAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKT 280
            AP+L++       RY G+ +K+   ++P L+D+ + G        F G   S F QL T
Sbjct: 241 CAPNLVTILYNQGGRYNGRRMKLQAVHLPHLLDLHLGGPELSITEDFFGACSSSFSQLMT 300

Query: 281 LELDSCNEVYMQ-----FSLFELPKLIDLR-LRVTTP-NRESLLGLTCIMKACPFLQKLI 333
           L++    EV MQ         + P+L +LR L   T  +  S+L +  ++K+ P L K  
Sbjct: 301 LKI-VVTEVRMQECQVRLKFPKFPELTNLRHLGFKTEYDICSILAVRLLIKSSPLLNKFT 359

Query: 334 LQLNDHGRRLGKKRQQFP-KYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIE 392
           L+L D  R   K+R +      HQ+LKVVE+ GF+G   + E   +   NA+ LEK+I+ 
Sbjct: 360 LELADGSRCQIKRRVRTGINCPHQNLKVVEIVGFIGGAVEYEFIMFFLDNASALEKIILR 419

Query: 393 P 393
           P
Sbjct: 420 P 420

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142991|emb|CBI20286.3| unnamed protein product [Vitis vinifera]

 Score =  188 bits (477), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 130/365 (35%), Positives = 193/365 (52%), Gaps = 37/365 (10%)

Query: 10  EISEDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTNSLEFDA--------S 61
           +  EDL++ LPD+IL++I+S LTL+EAA TSVLS RWR LWT+T+ L FD+        S
Sbjct: 18  DFGEDLLSELPDEILISILSRLTLREAAATSVLSQRWRYLWTYTSRLNFDSVVNKIVRRS 77

Query: 62  ESLWNVGFGNLEQERSKYINWVNNVLELHRGS-TINEFKVRFDLCDFHQSDITNWVYTVL 120
            S          + R KYI WV+ VL  +RG   ++EF+V FDL    +SDI  W    +
Sbjct: 78  HSFALSTAAGRRRRRRKYIKWVHKVLAKYRGGRNLDEFRVCFDLSKRSRSDIDKWFEFAM 137

Query: 121 GKRVQYIKLDL------------W---PGRYGHYYTFPKEFYNSIES---GRGLSGIKFL 162
            K V+ ++ D             W      + ++Y FP       E+        G K L
Sbjct: 138 SKNVKNLEFDFLRCSSQNQDRDPWFVMLSYFQNFYKFPHRILGVREARDPNGMFVGFKSL 197

Query: 163 RCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLME 222
           + L  K++NV+ + +E F+ NCPLL+RL V  S++LV LRV G SI L++LEI  C  ++
Sbjct: 198 KTLSLKSINVSSEAVEYFLSNCPLLERLSVHGSESLVNLRVAGPSIMLRHLEIVKCSSIQ 257

Query: 223 EIEISAPSLLSFRYYGQ------AIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFP 276
            IEI   +L+SF Y G+         ++IEN P LV+V             +  + SC  
Sbjct: 258 TIEICDTNLVSFTYRGERKGDLLPNNMHIENSPLLVEVLAGVGRLGFAKNMLLKLSSCVH 317

Query: 277 QLKTLELDSCNEVYMQFSLFELPKLIDLR-LRVTT---PNRESLLGLTCIMKACPFLQKL 332
           QL+ L+L   +    +   + LPKL +L+ L++T         LLG   ++K CP L+ L
Sbjct: 318 QLQILQLTVDHFFPERSRAYLLPKLRNLKQLKLTVFVGCPENCLLGFVAMLKKCPHLESL 377

Query: 333 ILQLN 337
           +LQ++
Sbjct: 378 VLQVD 382

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477131|ref|XP_003608851.1| F-box family-6 [Medicago truncatula] gi|355509906|gb|AES91048.1| F-box family-6 [Medicago truncatula]

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 143/424 (33%), Positives = 229/424 (54%), Gaps = 50/424 (11%)

Query: 4   RTRHKEEISEDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWT-FTNSLEFDAS- 61
           ++ ++++  ED+IN+LPD I +NI+++L +KEAARTS+LS +W+NLWT F+ +LEF+ S 
Sbjct: 15  KSNNEKDYEEDIINQLPDGIPINILANLPIKEAARTSILSRKWKNLWTYFSGTLEFEGSP 74

Query: 62  ------ESLWNVGFGNL--------EQERSKYINWVNNVLELHRGSTINEFKVRFDLCDF 107
                 + L  V  G L        + ER  Y +W+N +L   + ST+   K  F + + 
Sbjct: 75  IMKDMIKDLKKVTGGRLQMAMEIMYDAERQTYTSWINELLSSLQCSTLQGLKFWFPMKNV 134

Query: 108 HQSDITNWVYTVLGKRVQYIKLDLWPGRYGHY----YTFPKEFYNSIESGRGLSGIKFLR 163
             SDI NW++  + K+VQ  KL+L+ G    Y    + F  E +NS            L 
Sbjct: 135 --SDIDNWIHFAVQKKVQ--KLELYFGHTIVYVLPLHIFKVERFNS------------LC 178

Query: 164 CLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEE 223
            L  K++ V  + +E  + NC LL+ L +  S+    ++V GSS++LK LE+  C+ + +
Sbjct: 179 VLRMKSITVTDEMLEYLMCNCQLLETLSLVDSRVPKTMKVSGSSLKLKCLELVRCWELTK 238

Query: 224 IEISAPSLLSFRYYGQAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCF-PQLKTLE 282
           IEI A  L+SF+YYG  ++   ++VP L + S  GS       FV  +   F PQ+K L+
Sbjct: 239 IEIFAEKLVSFKYYGSHLETEFKSVPCLEEASFGGS-------FVEFVRESFLPQIKVLK 291

Query: 283 LD-SCNEVYMQFSLFELPKLIDLR-LRVTTPNRESLLGLTCIMKACPFLQKL-ILQLNDH 339
           LD + N   + + L +LPKL +L+ L +     + +     ++KA P L +L I  LN  
Sbjct: 292 LDITQNSPEVIYWLSQLPKLKNLKHLELVACADDGISACVMLLKASPSLWRLKIKMLNTK 351

Query: 340 GRRLGKKRQQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIEPSRYVRK 399
              + +   +F    H +LK +EL GF G   +VEL  Y+ +N   L+K+ I+ +R   K
Sbjct: 352 PTYITE--HKFTMECHYNLKELELVGFCGAACEVELVMYILENTDELQKITID-TRLPTK 408

Query: 400 KVLR 403
             LR
Sbjct: 409 PKLR 412

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865783|emb|CAN81149.1| hypothetical protein VITISV_020815 [Vitis vinifera]

 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 134/441 (30%), Positives = 208/441 (47%), Gaps = 65/441 (14%)

Query: 12   SEDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTNSLEFDASESLWNVGFG- 70
             ED +  LPDDIL  IIS L LKEA RT +LS RWR++WT  + L FDA+  L   G G 
Sbjct: 1316 GEDWLVELPDDILSTIISLLPLKEAVRTGILSKRWRSIWTCHSELWFDAASVL---GIGD 1372

Query: 71   ------------NLEQERSKYINWVNNVLELH-RGSTINEFKVRFDLCDFHQSDITNWVY 117
                        N + +  K++  V+  +    +G  IN F + F L     S I  W+ 
Sbjct: 1373 CSXSMSGNQPELNSQMQSXKFVERVDQFMYYRSQGPKINSFSIHFPLGKEFMSHIDQWIT 1432

Query: 118  TVLGKRVQYIKLDL------------WPGRYGHYYTFPKEFYNSIESGR-GLSGIKFLRC 164
              + K V+ I LDL                    Y FP   + S+  GR  L  ++   C
Sbjct: 1433 CAVMKGVENIDLDLSEYFSFNLKRDDTSSTAFQIYEFPCRLF-SVPGGRCTLKHLRLASC 1491

Query: 165  ----------------LHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSI 208
                            +  + VN++ + ++  +  C  L+RL +     LV L     ++
Sbjct: 1492 HLSALPSSNTLTSLITVDLQRVNISDQQLQDLLSTCSHLERLSLCVCNGLVNLSFSALNL 1551

Query: 209  QLKYLEIQSCYLMEEIEISAPSLLSFRYYGQAIKINIENVPQLVDVS----IRGSHTFRV 264
            QLK+L I++C+ +E IEI A  L++F+Y G     + +NVP+L   S    I+ S T  V
Sbjct: 1552 QLKFLSIKNCFRLETIEIHAADLVTFKYGGHLPSFSFKNVPKLAKASLEFFIKSSRTEGV 1611

Query: 265  TYFVGPIISCFPQLKTLELDSCNEVYMQFSLFELPK-------LIDLRLRV-TTPNRESL 316
             Y +       PQL+TL+L S     +     +LP+       +    L V    + + L
Sbjct: 1612 MYALTRFPQDLPQLETLKLLSV----LTLKKLQLPENGPTFTNIKQFELTVFPFDDDDDL 1667

Query: 317  LGLTCIMKACPFLQKLILQL-NDHGRRLGKKRQQF-PKYSHQHLKVVELHGFLGRQFDVE 374
              +  I+KA P LQKL L L +    +  K+ ++F P+  H+HL +++++GF G Q +V+
Sbjct: 1668 SWIGYILKAFPLLQKLELNLFSPSFTKQPKEIERFLPECPHRHLSILQINGFYGNQHEVD 1727

Query: 375  LAQYLFQNATMLEKLIIEPSR 395
            L +YL  N   LE L++ PS+
Sbjct: 1728 LLKYLLHNLVALELLVVAPSK 1748

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736820|emb|CBI26021.3| unnamed protein product [Vitis vinifera]

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 135/443 (30%), Positives = 210/443 (47%), Gaps = 69/443 (15%)

Query: 12  SEDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTNSLEFDASESLWNVGFG- 70
            ED +  LPDDIL  IIS L LKEA RT +LS RWR++WT  + L FDA+  L   G G 
Sbjct: 14  GEDWLVELPDDILSTIISLLPLKEAVRTGILSKRWRSIWTCHSELWFDAASVL---GIGD 70

Query: 71  ------------NLEQERSKYINWVNNVLELH-RGSTINEFKVRFDLCDFHQSDITNWVY 117
                       N + + SK++  V+  +    +G  IN F + F L     S I  W+ 
Sbjct: 71  CSTSMSGNQPELNSQMQSSKFVERVDQFMYYRSQGRKINSFSIHFPLGKEFMSHIDQWIT 130

Query: 118 TVLGKRVQYIKLDLWPGRYGHY--------------YTFPKEFYNSIESGR-GLSGIKFL 162
             + K V+ I LDL    Y  +              Y FP   + S+  GR  L  ++  
Sbjct: 131 CAVMKGVENIDLDL--SEYFSFNLKRDDTSSTAFQIYEFPCRLF-SVPGGRCTLKHLRLA 187

Query: 163 RC----------------LHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGS 206
            C                +  + VN++ + ++  +  C  L+ L +     LV L     
Sbjct: 188 SCHLSALPSSNTLTSLITVDLQRVNISDQQLQDLLSTCSHLEWLSLCVCNGLVNLSFSAL 247

Query: 207 SIQLKYLEIQSCYLMEEIEISAPSLLSFRYYGQAIKINIENVPQLVDVS----IRGSHTF 262
           ++QLK+L I++C+ +E IEI A  L++F+Y G     + +NVP+L   S    I+ S T 
Sbjct: 248 NLQLKFLSIKNCFRLETIEIHAADLVTFKYGGHLPSFSFKNVPKLAKASLEFFIKSSRTE 307

Query: 263 RVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFELPK-------LIDLRLRV-TTPNRE 314
            V Y +       PQL+TL+L S     +     +LP+       +    L V    + +
Sbjct: 308 GVMYALTRFPQDLPQLETLKLLS----VLTLKKLQLPENGPTFTNVKQFELTVFPFDDDD 363

Query: 315 SLLGLTCIMKACPFLQKLILQL-NDHGRRLGKKRQQF-PKYSHQHLKVVELHGFLGRQFD 372
            L  +  I+KA P LQKL L L +    +  K+ ++F P+  H+HL +++++GF G Q +
Sbjct: 364 DLSWIGYILKAFPLLQKLELNLFSPSFTKQPKEIERFLPECPHRHLSILQINGFYGNQHE 423

Query: 373 VELAQYLFQNATMLEKLIIEPSR 395
           V+L +YL  N   LE L++ PS+
Sbjct: 424 VDLLKYLLHNLVALELLVVAPSK 446

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357155585|ref|XP_003577168.1| PREDICTED: LOW QUALITY PROTEIN: putative F-box/LRR-repeat protein At5g54820-like [Brachypodium distachyon]

 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 112/404 (27%), Positives = 193/404 (47%), Gaps = 32/404 (7%)

Query: 19  LPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTNSLEFDASESLWNVGFGNLEQE--- 75
           LP+DIL  I+S LTLK+A RTSV+S+ WR++W +   L F  S  L +        +   
Sbjct: 13  LPEDILSIIVSRLTLKDAVRTSVVSSDWRHIWKYHPILRFVISSVLGSKAKRKRSSDQHK 72

Query: 76  ---RSKYINWVNNVLELHRGSTINEFKVRFDLCDFHQSDITNWVYTVLGKRVQYIKLDLW 132
              R ++I+ V+ +L    G  +++  V+FDL + H   I  WVY  +    + + L+  
Sbjct: 73  RRLRKRFIDRVSYILSKXSGLAVSKLAVKFDLREEHADHIDGWVYFAIASMAKILTLNFS 132

Query: 133 PG-RYGHYYTFPKEFYNS----------IESGRGLSGIKFLRCLHFKTVNVNG----KDI 177
           P   Y ++YTFP   +NS          ++S   +  I F    + K + ++     +D+
Sbjct: 133 PYLGYENHYTFPCHLFNSKNASYLQALRLDSVNLVPSIDFCGFANLKMLALDHVLVMQDL 192

Query: 178 ELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYY 237
           + F+  CP L+ L +                +LKYL +++C + + IE +AP+L +F Y 
Sbjct: 193 QYFLSKCPALEWLSIQRCYLKCNCHASAPLGRLKYLCVKNCEV-DRIEFAAPNLNTFEYR 251

Query: 238 GQAIKINIENVPQL--VDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEV----YM 291
           G  I I      +L    + I G  T    +   P  +  P ++TL +++  ++      
Sbjct: 252 GYQILIKFHECSKLKMAIIHIIGHSTLEYVFTGLP--NAVPHVETLHVETFVDIPKIPEF 309

Query: 292 QFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLN--DHGRRLGKKRQQ 349
           +++      L  L LRV    + + L L C+++A PFL+ L L +   +    +G     
Sbjct: 310 RYAPLVFSHLKHLALRVRLFGKTTALQLACLLEAAPFLEDLHLDMYCFEGVDYIGSALDM 369

Query: 350 FPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIEP 393
                H HLK   + GF G +  +ELA+Y+ +NA  LE++ I+P
Sbjct: 370 IVDSPHYHLKTACMTGFRGNRGQIELAKYIMRNAVELERMTIDP 413

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544606|ref|XP_003540740.1| PREDICTED: putative F-box protein At3g58860-like [Glycine max]

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 133/455 (29%), Positives = 232/455 (50%), Gaps = 51/455 (11%)

Query: 5   TRHKEEISEDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTNSLEFDASESL 64
            R++ E + D+I+ +PDDIL +I+S LTLKEAARTSVL+ +WR  WTF + L  D   SL
Sbjct: 2   ARNRFENNRDIISTMPDDILGDILSRLTLKEAARTSVLATKWRYHWTFFSGL-LDFDHSL 60

Query: 65  WNVGF-----GNLEQ------ERSKYINWVNNVLELHRGSTINEFKVRFDLCDFHQSDIT 113
            N        G L +      E  +++  + NV++  + S++   ++  DL D  +  + 
Sbjct: 61  RNFHLRREHVGILTKCNVFVYEWERFMTRMANVMKSLKSSSLQGLRICMDLGDPWR--VA 118

Query: 114 NWVYTVLGKRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVN 173
            WV     K VQ + LD        +Y       +++   RG   +K L  L   +V+V+
Sbjct: 119 EWVKYAAEKHVQTLDLDFSYHFSVPFYEISLTIVHNVFPSRGYE-MKSLCNLRLSSVDVS 177

Query: 174 GKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLS 233
           G+ IE  + +CPLL+ +CV  SK LVRL+V G +++LK+LE+  C +M +++I A +L++
Sbjct: 178 GEVIEGLLASCPLLESICVIESKRLVRLKVRGEALRLKHLELVECRIM-DLDIYAVNLVT 236

Query: 234 FRYYGQAIKINIENVPQLVDVSIRG-------SHTFRVTYFVGPIISCFPQLKTLELDSC 286
           FRY G+  K   +NVP LV+ S  G       S   RV ++         Q+  L+L+  
Sbjct: 237 FRYQGKYGKFKFQNVPSLVEASFGGIFCSYLESDMDRVDFY-----GVLLQINVLKLE-L 290

Query: 287 NEVYMQFSLFELPKLIDL-RLRVTTPNRE--SLLGLTCIMKACPFLQ--KLILQLNDHGR 341
           ++ Y  F L  LP   ++ +L +  P+R   +L     ++ + P ++  K+  Q ND   
Sbjct: 291 SKPYPGF-LEGLPVFDNVGQLEIRIPHRSGAALDHHVSLLSSFPSVRVLKIKFQRNDLS- 348

Query: 342 RLGKKRQQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIEP-------- 393
            + +  +   ++ + +L+ +E+ GF      +EL   +F+ A  L  ++++P        
Sbjct: 349 VVEENWKANLEHEYPNLRELEVSGFRRDPSQMELLISIFEKAPNLNSVVVDPLSSIHVDR 408

Query: 394 -----SRY--VRKKVLRNCVKMLEAKVPHSVKLIV 421
                +RY  +R++  +     L+  +P   +LIV
Sbjct: 409 SPDVKARYREMRRETTKWLADALKPHLPPLTQLIV 443

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357119372|ref|XP_003561416.1| PREDICTED: uncharacterized protein LOC100838353 [Brachypodium distachyon]

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 109/431 (25%), Positives = 192/431 (44%), Gaps = 55/431 (12%)

Query: 16  INRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTNSLEFDASESLWNVGFGNLEQE 75
           ++ LP D+L +++S L ++EA +TS+LS +W+ +W    SL F+    +  V +   E  
Sbjct: 26  LSDLPMDVLCSVLSQLPMEEAVKTSILSCQWKYIWCHQTSLNFNCKTIMPRVAWSTREAV 85

Query: 76  RSKYINWVNNVLELHRGSTINEFKVRFDLCDFHQSDITNWVYTVLGKRVQYIKLDLW--- 132
           R ++I  VN VL    G+ + +  +RFDL D H +D+  WV   +  + + + L+LW   
Sbjct: 86  RQEFIKRVNAVLRQRNGAGVEKMNIRFDLDDRHAADVDRWVNLAIASKTKVLTLELWLDS 145

Query: 133 -----------PGRYGHYYTFPKEFYN---------------SIESGRGLSGIKFLRCLH 166
                      P R    Y FP + ++               S++      G   L+ L+
Sbjct: 146 PAIVYRLRVSDPERM-EPYNFPFQLFDECNGSHLRSLHLSTVSLKLPTNFKGFLNLKKLY 204

Query: 167 FKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEI 226
              V++  +D+  F+  C +L+ L V     L  L +  S+ QLK+L+I+ C L+ ++ +
Sbjct: 205 LSGVSITDEDLGHFVSKCSVLEFLGVLFCTMLETLTIPHSANQLKHLQIRCCPLLHKVRL 264

Query: 227 SAPSLLSFRYYGQAIKINIENVPQLVDVSI-----RGSHTFRVTYFVGPIISCFPQLKTL 281
           +  SL    Y G       +    L D  I     R S         G   SC   + T 
Sbjct: 265 NY-SLKMLVYKGPVTYFVSDRTSSLTDACINLLDVRTSLKHLFAELSGS-TSCPKSVAT- 321

Query: 282 ELDSCNEVYMQFSLFELPKLIDLR-------LRVTTPNRESLLGLTCIMKACPFLQKLIL 334
               C ++            + LR       + V++ +   +L L  ++KA P ++KL L
Sbjct: 322 ---KCRDLERSIPPRSSTCFLGLRHVKLEVTILVSSESGTDVLDLGHLLKAAPSMEKLEL 378

Query: 335 QL------NDHGRRLGKKRQQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEK 388
            +        + R  G  R   P + H HLK+V + GF G +  +ELA ++ +N  +LE+
Sbjct: 379 HMWMRRKHKPYCRDDGDLR-ILPAHPHSHLKLVHITGFYGHKDQLELADHILRNCVVLEE 437

Query: 389 LIIEPSRYVRK 399
           + ++P   + K
Sbjct: 438 MKVDPRVAIEK 448

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	427
TAIR|locus:2157922	444	AT5G53840 "AT5G53840" [Arabido	0.918	0.882	0.248	2.2e-19
TAIR|locus:2122754	409	AT4G10400 "AT4G10400" [Arabido	0.824	0.860	0.276	5.3e-18
TAIR|locus:2008276	435	AT1G51370 "AT1G51370" [Arabido	0.889	0.873	0.242	9e-18
TAIR|locus:2026761	451	AT1G69630 [Arabidopsis thalian	0.564	0.534	0.274	1.2e-17
TAIR|locus:2159803	410	AT5G38590 "AT5G38590" [Arabido	0.894	0.931	0.259	3.5e-17
TAIR|locus:2085013	532	AT3G42770 "AT3G42770" [Arabido	0.306	0.246	0.326	1.9e-15
TAIR|locus:2099019	457	AT3G58860 "AT3G58860" [Arabido	0.730	0.682	0.245	4.8e-15
TAIR|locus:2052351	737	AT2G42730 [Arabidopsis thalian	0.529	0.306	0.287	4.9e-15
TAIR|locus:2162499	443	AT5G22670 "AT5G22670" [Arabido	0.545	0.525	0.279	1e-14
TAIR|locus:2162454	437	AT5G22700 "AT5G22700" [Arabido	0.543	0.530	0.258	1.1e-14

TAIR|locus:2157922 AT5G53840 "AT5G53840" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 2.2e-19, P = 2.2e-19
 Identities = 111/446 (24%), Positives = 213/446 (47%)

Query:    13 EDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTNSLEFDASESLWNVGFGNL 72
             E+ +++LPD ++  I+SHL+ K+A RTS+LS RWRNLW     L+FD+ E          
Sbjct:    17 EERLSQLPDHLICVILSHLSTKDAVRTSILSTRWRNLWQLVPVLDFDSREL--------- 67

Query:    73 EQERSKYINWVNNVLELHRGSTINEFKVR-FDLCDFHQSDITNWVYTVLGKRVQYIKLDL 131
              +  S+++++  +   LH+ S I + +V  +DL   +   +T+W+  V   R+Q+I + +
Sbjct:    68 -RSFSEFVSFAGSFFYLHKDSYIQKLRVCIYDLAGNYY--LTSWIDLVTRHRIQHIDISV 124

Query:   132 WPGRYGHYYTFPKEFYNS-----IESGR-GLSGIKF-----LRCLHFKTVN-VNGKDIEL 179
             +      +   P   Y       ++  R  +  ++F     L+ L    VN  N   ++ 
Sbjct:   125 FT--CSGFGVIPLSLYTCDTLVHLKLSRVTMVNVEFVSLPCLKILDLDFVNFTNETTLDK 182

Query:   180 FIQNCPLLDRLC-VDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEE-IEISAPSL--LSFR 235
              I   P+L+ L  V  S+  V++  + S   LK +EI   +     + I  P L  LS +
Sbjct:   183 IISCSPVLEELTIVKSSEDNVKIIQVRSQT-LKRVEIHRRFDRHNGLVIDTPLLQFLSIK 241

Query:   236 YYG-QAIK-INIENVPQL-VDVSIRGSHTFRVTYFVGPIISCFPQLKTLEL--DSCNEV- 289
              +  ++I+ IN+    ++ +DV++   +            +   ++++L +   +  ++ 
Sbjct:   242 AHSIKSIEFINLGFTTKVDIDVNLLDPNDLSNRSMTRDFFTTISRVRSLVIRHGTIKDIF 301

Query:   290 -YMQFS-LFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKR 347
              YM+   L +   L +L    +  N E LL L   +K+CP L+ L L+L D+ +   KK 
Sbjct:   302 HYMELEPLQQFCYLSELSAVCSISNLEMLLNL---LKSCPKLESLSLKLVDYEKN--KKE 356

Query:   348 QQF-----PKYSHQHLKVVELHG-FLGRQFDVELAQYLFQNATMLEKLIIEPSRYVRKKV 401
             +       P      LK V+L    LG   ++++A+Y  +N+T+LEKL ++     + + 
Sbjct:   357 EVMSSTVPPPCLVSSLKFVKLESQLLGCGTELKVARYFLENSTILEKLTLKIDYMYKDEA 416

Query:   402 LRNCVKMLEAKVPH---SVKLIVGSL 424
               N ++     VP    + ++++ SL
Sbjct:   417 NVNHIRQTLHAVPRCSSTCEVVIHSL 442

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:2122754 AT4G10400 "AT4G10400" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 5.3e-18, P = 5.3e-18
 Identities = 112/405 (27%), Positives = 179/405 (44%)

Query:    14 DLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTNSLEFDASESLWNVGFGNLE 73
             D I+ LPD++LV I+S +  K A  TS+LS RW  LW +   L+F +        +   E
Sbjct:     2 DRISGLPDEVLVKILSFVPTKVAVSTSILSKRWEFLWMWLTKLKFGSKR------YSESE 55

Query:    74 QERSKYINWVNNVLELHRGSTINEFKVRFDLCDFHQSDITNWVYTVLGKRVQYIKLDLWP 133
              +R +   +++  L LHR   I  F++      F   DI  WV   + + ++ +K+  + 
Sbjct:    56 FKRLQC--FLDRNLPLHRAPVIESFRLVLSDSHFKPEDIRMWVVVAVSRYIRELKI--YS 111

Query:   134 GRYGHYYTF-PKEFYN--SIE----SGRGLSGIKFLRCL-HFKTVNVNGK------DIEL 179
               YG      P   Y   S+      G  L  +  + CL   KT+ + G        ++ 
Sbjct:   112 SHYGEKQNILPSSLYTCKSLVILKLDGGVLLDVPRMVCLPSLKTLELKGVRYFKQGSLQR 171

Query:   180 FIQNCPLLDRLCVD--HSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYY 237
              + NCP+L+ L V+  H   + +L VI  S+Q   L   S     E  I  PSLLSF+  
Sbjct:   172 LLCNCPVLEDLVVNLSHHDNMGKLTVIVPSLQRLSLSTPSS---REFVIDTPSLLSFQLV 228

Query:   238 GQAIKIN---IENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEV-YMQF 293
              +    +   IEN+P+L +  I       +   +G I S    +K L + S  EV Y + 
Sbjct:   229 DRNDNSHTFLIENMPKLREAYINVPFA-DIKSLIGSITS----VKRLAISS--EVGYGEG 281

Query:   294 SLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLIL--QLNDHGRRLG----KKR 347
              +F    L +L L     N+ S   L   +K  P L++L+L  + +DH   LG     + 
Sbjct:   282 FIFN--HLEELTLW----NKYSSNLLVWFLKNSPNLRELMLVSETDDH-ENLGMLSWNQP 334

Query:   348 QQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIE 392
                P+     L+      +LGR  D ++A Y+ +NA  L    I+
Sbjct:   335 SIVPECMLSSLQKFTWFKYLGRPQDRDIAVYILKNACRLRTATIK 379

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2008276 AT1G51370 "AT1G51370" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 9.0e-18, P = 9.0e-18
 Identities = 107/442 (24%), Positives = 200/442 (45%)

Query:     3 KRTRHKEEIS--EDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTNSLEFDA 60
             K+T+  +++S  ED I++LP+ ++  I+ HL+ K++ RTS LS +WR LW     L+ D 
Sbjct:     6 KKTKICDKVSHEEDRISQLPEPLISEILFHLSTKDSVRTSALSTKWRYLWQSVPGLDLDP 65

Query:    61 SESLWNVGFGNLEQERSKYINWVNNVLELHRGSTINEFKVRFDLCDFHQS-DITNWVYTV 119
               S             +  +++V +  + HR S I   K+R DL   H   D+ +W+   
Sbjct:    66 YAS----------SNTNTIVSFVESFFDSHRDSWIR--KLRLDLGYHHDKYDLMSWIDAA 113

Query:   120 LGKRVQYIKLDLWPGRYGHYYTFPKEFYN-----------SIESGRGLSGIKFLRCLHFK 168
               +R+Q++ +  +     H    P   Y            ++ +      +  L+ +HF+
Sbjct:   114 TTRRIQHLDVHCF-----HDNKIPLSIYTCTTLVHLRLRWAVLTNPEFVSLPCLKIMHFE 168

Query:   169 TVNV-NGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIG-SSIQLKYLEIQSCYLMEEIEI 226
              V+  N   ++  I   P+L+ L +  S    +  V+   S  LK L+I   ++  ++ I
Sbjct:   169 NVSYPNETTLQKLISGSPVLEELIL-FSTMYPKGNVLQLRSDTLKRLDINE-FI--DVVI 224

Query:   227 SAPSLLSFR---YYGQAIKINIENVPQLVDVS-IRGSHTFRVTYFVGPIISCFPQLKTLE 282
              AP L   R   Y  +  +I     P  +D+  +     ++    +  I+    +++ L 
Sbjct:   225 YAPLLQCLRAKMYSTKNFQIISSGFPAKLDIDFVNTGGRYQKKKVIEDILIDISRVRDLV 284

Query:   283 LDSCNEVYMQFSLFELPK-LIDLRLRVTTPNRESLLG----LTCIMKACPFLQKLILQL- 336
             + S    + +F L+   + L+  R  ++  N    +     L  ++++CP L+ LIL++ 
Sbjct:   285 ISS--NTWKEFFLYSKSRPLLQFRY-ISHLNARFYISDLEMLPTLLESCPKLESLILEMV 341

Query:   337 -NDHGRRLGKKRQQ------FPKYSHQHLKVVELHGFLGR-QFDVELAQYLFQNATMLEK 388
              N   RR G+KR+        P      LK VEL   + R + ++EL +Y+  N+T+L+K
Sbjct:   342 KNQSTRRHGEKREPNVMVSTVPWCLVSSLKFVELKRSIPRYEGEMELVRYVLTNSTVLKK 401

Query:   389 LIIEPSRYVRKKVLRNCVKMLE 410
             L +    Y  KK    C  + E
Sbjct:   402 LRLNV--YYTKKA--KCAFLTE 419

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026761 AT1G69630 [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
 Identities = 76/277 (27%), Positives = 133/277 (48%)

Query:     3 KRTRHKEEISEDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTNSLEFDASE 62
             K  R K     D I++LPD +L  ++ +L  K+  +TSVLS RWRNLW     L+ D   
Sbjct:     7 KHVRAKGSDEVDWISKLPDCLLCEVLLNLPTKDVVKTSVLSRRWRNLWKHVPGLDLD--- 63

Query:    63 SLWNVGFGNLEQERSKYINWVNNVLELHRGSTINEFKVRFDLCDFHQSDIT---NWVYTV 119
                N  F    QE + ++++V++ L+ +  S + +F +++D  D +  DI     W+ T+
Sbjct:    64 ---NTDF----QEFNTFLSFVDSFLDFNSESFLQKFILKYDCDDEYDPDIFLIGRWINTI 116

Query:   120 LGKRVQYIKLDLWPGRYGHYYT-FPKEFYN--SIES----GRGLSGIKFLRCLHFKTVNV 172
             + ++VQ+I  D+    YG +    P   Y   S+ S    G  L+  +F+     K +++
Sbjct:   117 VTRKVQHI--DVLDDSYGSWEVQLPSSIYTCESLVSLKLCGLTLASPEFVSLPSLKVMDL 174

Query:   173 ------NGKDIELFIQNCPLLDRLCVDHS--KTLVRLRVIGSSIQLKYLEIQSCY--LME 222
                   +   +E  I  CP+L+ L ++ S    +  LRV   S+ L++  +      ++E
Sbjct:   175 IITKFADDMGLETLITKCPVLESLTIERSFCDEIEVLRVRSQSL-LRFTHVADSDEGVVE 233

Query:   223 EIEIS--APSLLSFRYYGQAIKINIENVP-QLVDVSI 256
             ++ +S  AP L   R     +   I N P +LV   I
Sbjct:   234 DLVVSIDAPKLEYLRLSDHRVASFILNKPGKLVKADI 270

GO:0005634 "nucleus" evidence=ISM

GO:0007059 "chromosome segregation" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

TAIR|locus:2159803 AT5G38590 "AT5G38590" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 3.5e-17, P = 3.5e-17
 Identities = 110/424 (25%), Positives = 187/424 (44%)

Query:    14 DLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTNSLEFDASESLWNVGFGNLE 73
             D IN LPDD+LV I+S++    A  TS+LS RW  LW +  +L++    S W    G++ 
Sbjct:     2 DKINGLPDDLLVKILSYVPTDIAVSTSILSKRWEFLWMWLPNLDYT---SRWCRKPGDVG 58

Query:    74 QERSKYINWVNNVLELHRGSTINEFKVRFDLCDFHQSDITNWVYTVLGKRVQYIKLDLWP 133
                    ++++  L LHR   I   +   +  D    DI  W+   + + V  + +D + 
Sbjct:    59 LR-----DFIHKNLPLHRAPVIESLRFHSNSPDIKPEDIRRWIEIAVSRHVHDLDIDHFS 113

Query:   134 GRYGHYYT--FPKEFYNSIE-SGRGLSGIKFLRCL-HFKTV---NVN---GKDIELFIQN 183
                  + +  F  +   +++     L  I  + CL   KT+   NV+   GK ++  +  
Sbjct:   114 ENENIFLSSFFACKSLVTLKLRSVTLRDIPSMVCLPSLKTLLLDNVSFVEGKSLQELLSI 173

Query:   184 CPLLDRL---CVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSL--LSFRYYG 238
             CP+L+ L   C D+  T     V+ S + L  L I   +L++   I  PSL  L    + 
Sbjct:   174 CPVLEDLSVYCDDYENTKELTIVVPSLLSLS-LYIPDEWLLDGYWIDTPSLEYLKLEDWN 232

Query:   239 QAIKIN-IENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFE 297
                 ++ I+N+P+L     R ++     +    +I     +K L + S  + Y    +F 
Sbjct:   233 SCDHLSLIKNMPKL-----REAYVDAKCFLPKSVIESITSVKHLTICS-KDGYGDGFVFN 286

Query:   298 LPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKL-ILQLNDHGRRLG------KKRQQF 350
               +L  L L V   +  SLLG   ++K  P L+ L I  + DH   +G       +    
Sbjct:   287 --QLEHLTLCVCRGDSPSLLGQ--LLKDSPNLRILEISVMEDHVDDVGISLDGWNQPSSV 342

Query:   351 PKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIEPSRYVRKKVLRNCVKMLE 410
             P+     L++ +   +LGR  D ++A Y+ +NA  L+K  I   R  R    R  +K L 
Sbjct:   343 PECLLSSLQIFKWPQYLGRPEDRDIAVYILKNARHLKKTTILADRCERFVTQRRMIKELL 402

Query:   411 AKVP 414
               +P
Sbjct:   403 QALP 406

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2085013 AT3G42770 "AT3G42770" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
 Identities = 45/138 (32%), Positives = 72/138 (52%)

Query:    16 INRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTNSLEFDASESLWNVGFG-NLEQ 74
             +N LPD++LV I+S L  KEA  TS+LS RWR L+T + +L+FD S  L +     N+  
Sbjct:     1 MNCLPDELLVQILSFLPTKEATSTSLLSKRWRTLFTLSPNLDFDNSLLLQSKKRKWNMRN 60

Query:    75 ERSKYINWVNNVLELHRGSTINEFKVRFD--LCDFH-QSDITNWVYTVLGKRVQYIKLDL 131
              +  ++ +V++ L L  G  I  F ++F   L D + + D+  W+   L   V  + L +
Sbjct:    61 IQKSFVGFVDSTLALQGGKGIKSFSLKFKETLGDVNGEVDVNRWICNALEHGVSELHLRI 120

Query:   132 WPGRYGHYYTFPKEFYNS 149
                +  H    P E + S
Sbjct:   121 DYTKRCH---LPSEIFTS 135

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2099019 AT3G58860 "AT3G58860" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 4.8e-15, P = 4.8e-15
 Identities = 85/346 (24%), Positives = 160/346 (46%)

Query:    14 DLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTNSLEFDASESLWNVGFGNLE 73
             DL ++LPD+++ +I+S L  KEAA TSVL+ +WR L+ F  SL+F+ S+ L +   G  E
Sbjct:     7 DLFSKLPDEVISHILSSLPTKEAASTSVLAKKWRYLFAFVPSLDFNDSDFL-HPQEGKRE 65

Query:    74 QE---RSKYINWVNNVLELHRGSTINEFKVRFDLCDFHQSDITNWVYTVLGKRVQYIKLD 130
             ++   RS ++++V+ VL L   S I +F +           +  W+  VL + V ++ L 
Sbjct:    66 KDGILRS-FMDFVDRVLALQGASPIKKFSLNVKT-GVDPDRVDRWICNVLQRGVSHLALF 123

Query:   131 LWPGRYGHYYTFPKEFYNS-----IESGRGLS--------GIKFLRCLHFKTVNVNGKDI 177
             +    +   Y+ P E   S     +++G G+          +  L+ L  ++V       
Sbjct:   124 M---DFEEEYSLPYEISVSKTLVELKTGYGVDLYLWDDDMFLPMLKTLVLESVEFGRGQF 180

Query:   178 ELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQS---CYLMEEIEISAPSLLSF 234
             +  +  CP+L+ L + + +   R  VI SS  LK L+I S   C  +  +    P+L+  
Sbjct:   181 QTLLPACPVLEELMLLNMEWKDR-NVILSSSSLKNLKITSEDGC--LGTLSFDTPNLVFL 237

Query:   235 RYYGQAIK----INIENVPQL-VDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEV 289
              YY    +    +N++N+ ++ +++ +      R    V  +I      +   +      
Sbjct:   238 DYYDYVAEDYPIVNLKNLVEVGINLVLTADRINRARDNVWNLIHGIQNAEIFHISPVTFE 297

Query:   290 YMQFSLFELPKLIDLR-LRVTTPNRESLLGLTCIMKACPFLQKLIL 334
              +  S   +P   +L  L + T  ++    +  ++K CP L+ L L
Sbjct:   298 VLSLSCEAMPVFKNLTTLNIRTVMQQGWQAMPLLLKNCPNLETLYL 343

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2052351 AT2G42730 [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 4.9e-15, Sum P(2) = 4.9e-15
 Identities = 71/247 (28%), Positives = 124/247 (50%)

Query:    12 SEDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTNSLEFDASESLWNVGFGN 71
             ++D+I+RLPD++L  I+S ++ KEA  TSVLS RW+N++   ++L+ D  +S+       
Sbjct:     3 AKDVISRLPDEVLGRILSLISTKEAVSTSVLSKRWKNMFVLVSNLDIDDRQSVPKTKQNR 62

Query:    72 LEQERSKYINWVNNVLELHRGSTINEFKVRFDLC---DFHQSDITNWVYTVLGKRVQYIK 128
             +E  R+ Y+ +V+ +L+  RGS+I +  ++  +        S I +W+  VL   V  + 
Sbjct:    63 IEIHRN-YMAFVDKLLDTQRGSSIKKLTLKSHVGVRGGTDSSRIQSWICNVLDHGV--MD 119

Query:   129 LDLWPGRYGHYYTFPKEFYNS-----IESGRGLS-------GIKFLRCLHFKTVN-VNGK 175
             LD++    G     P   + S     +  GRG +        +  LR L   +VN V G 
Sbjct:   120 LDVFITLKGKSPPVPAMIFKSKTLVKLRVGRGFTIKLSQDVSLPLLRTLCLDSVNFVGGH 179

Query:   176 DIE-LFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSF 234
             ++    I  CP+L+ L V+  +  V      SS  LK L I+       I + AP+L+ +
Sbjct:   180 NVVGTLISRCPVLEELVVEERRC-VDWTCSVSSPSLKRLHIRFDRKFTSISLDAPNLIYY 238

Query:   235 RYYGQAI 241
             ++ G  +
Sbjct:   239 KHSGYVL 245

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2162499 AT5G22670 "AT5G22670" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
 Identities = 75/268 (27%), Positives = 122/268 (45%)

Query:    12 SEDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTNSLEFDASESLWNVGFGN 71
             S+D I+ LPDD+L  I+S+L  K A RTSVLS RW+        LEF+ SE       G 
Sbjct:     9 SQDSISLLPDDLLCRILSNLPTKVAVRTSVLSKRWKRFSLSVPLLEFNVSEF-----HGY 63

Query:    72 LEQERSKYINWVNNVLELHRGSTINEFKVRFDLCDFHQSDITNWVYTVLGKRVQYIKLDL 131
              E  R      V+  L+  R + I++ K+ F+     +S +T W++  + ++VQ++ +  
Sbjct:    64 YEFARV-----VHGFLDTSRETCIHKLKLAFEKKQHDRSYLTQWIHNAVKRKVQHLDIGR 118

Query:   132 WPGRYGHYYTFPKEFYN--SIESGR----GLSGIKFLRCLHFKTV----NVNGKD--IEL 179
             W   Y      P   Y   ++ S R     L     +     KT+    N+   D  +E 
Sbjct:   119 WS--YLGQELIPHSLYTCETLVSLRLHNVSLPDFDHVSLPRLKTMHLIDNIYPNDALLEN 176

Query:   180 FIQNCPLLDRLCVDHS-KTLVR-LRVIGSSIQLKYLEIQSCYLME------EIEISAPSL 231
              I +CP+L+ L V    + +V+ LRV   S++   L +      +      E+ I AP L
Sbjct:   177 LISSCPVLEDLNVSRDVENIVKVLRVRSLSLKSLILALDGDRYGDIEDDSWEVVIDAPRL 236

Query:   232 --LSFRY-YGQAIKINIENVPQLVDVSI 256
               LS R    ++  ++    P  VD+ +
Sbjct:   237 SYLSLRDDQSKSFVLSSVTSPAKVDIDV 264

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2162454 AT5G22700 "AT5G22700" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
 Identities = 70/271 (25%), Positives = 128/271 (47%)

Query:    14 DLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTNSLEFDASESLWNVGFGNLE 73
             D I+ LPD++L  I+S+L  K A  TS+LS RWR++W  T  L+ D         F    
Sbjct:     6 DRISSLPDELLCQILSNLPTKNAVTTSILSTRWRSIWLSTPVLDIDID------AF---- 55

Query:    74 QERSKYINWVNNVLELHRGSTINEFKVRFDLCDFHQSDITNWVYTVLGKRVQYIKLDLWP 133
              + + ++++ +  LE  + S +++FK+  +  D     I  W+   + +R+Q++++D   
Sbjct:    56 DDATTFVSFASRFLEFSKDSCLHKFKLSVERDDVDMCTIMPWIQDAVNRRIQHLEVDC-- 113

Query:   134 GRYG-HYYTFPKEFYNS--IESGR----GLSGIKFLRCLHFKTVNVNG------KDIELF 180
              R+  H+       Y S  + S R     L   +F+   + K +++        + +E F
Sbjct:   114 -RFSFHFEAVYLTLYLSETLVSLRLHFVTLHRYEFVSLPNLKVMHLEENIYYCLETLENF 172

Query:   181 IQNCPLLDRLCVDHSKTLVR---LRVIGSSIQ-LKY-LEIQSCYLMEEIE-----ISAPS 230
             I +CP+L+ L V     ++    LRV   S+  LK  L+  + + +++I+     I AP 
Sbjct:   173 ISSCPVLEDLTVVRIVDIITEKILRVRSRSLNSLKLVLDSSNGWFIDDIDEWKVIIDAPR 232

Query:   231 L--LSFRYYGQAIKINIENVPQLVDVSIRGS 259
             L  LS +   Q+    I N+       I+ S
Sbjct:   233 LAYLSLKD-DQSASFVISNLGSSAKADIKVS 262

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	427
pfam08387	51	pfam08387, FBD, FBD	1e-06
pfam00646	48	pfam00646, F-box, F-box domain	1e-05
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	0.004
pfam12937	47	pfam12937, F-box-like, F-box-like	0.004
smart00579	72	smart00579, FBD, domain in FBox and BRCT domain co	0.004

>gnl|CDD|203925 pfam08387, FBD, FBD

 Score = 44.8 bits (107), Expect = 1e-06
 Identities = 15/41 (36%), Positives = 27/41 (65%)

Query: 351 PKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLII 391
           P+     L+ VE  G+ G + ++ELA+Y+ +NA +L+K+ I
Sbjct: 9   PECLLSSLETVEWRGYRGEEEELELAKYILENARVLKKMTI 49

This region is found in F-box (pfam00646) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes. In fact, several family members are annotated as being similar to transcription factors. Length = 51

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 14 DLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWT 51
            +  LPDD+L+ I+S L  K+  R S++S RWR+L  
Sbjct: 1  FSLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVD 38

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 34.7 bits (81), Expect = 0.004
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 19 LPDDILVNIISHLTLKEAARTSVLSNRWRNLW 50
          LPD+IL  I+S L  K+  R   +S +WR+L 
Sbjct: 1  LPDEILEEILSKLDPKDLLRLRKVSRKWRSLI 32

Length = 41

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 34.8 bits (81), Expect = 0.004
 Identities = 13/34 (38%), Positives = 23/34 (67%)

Query: 16 INRLPDDILVNIISHLTLKEAARTSVLSNRWRNL 49
          ++ LPD+IL+ I S+L  ++  R +++  RWR L
Sbjct: 1  LSDLPDEILLQIFSYLDPRDLLRLALVCRRWREL 34

This is an F-box-like family. Length = 47

>gnl|CDD|214730 smart00579, FBD, domain in FBox and BRCT domain containing plant proteins

 Score = 35.6 bits (83), Expect = 0.004
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 357 HLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIEPSRYVRKKVLR 403
            L+V+E+ G+ G + + EL +Y  +NA  L+KL I       ++ L 
Sbjct: 6   SLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDEEKLE 52

Length = 72

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	427
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.68
KOG4341	483	consensus F-box protein containing LRR [General fu	99.67
PF08387	51	FBD: FBD; InterPro: IPR013596 This region is found	98.85
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.76
smart00579	72	FBD domain in FBox and BRCT domain containing plan	98.68
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.54
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.46
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.4
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.35
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.33
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.3
KOG4341	483	consensus F-box protein containing LRR [General fu	98.28
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.27
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.24
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.11
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.08
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.05
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.95
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.93
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.8
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.32
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.22
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	97.08
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.07
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.94
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	96.83
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.81
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.79
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	96.72
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	96.72
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.71
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	96.71
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.51
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	96.31
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.29
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	96.12
PRK15386	426	type III secretion protein GogB; Provisional	95.63
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	95.15
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	95.1
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	95.03
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	94.88
KOG0617	264	consensus Ras suppressor protein (contains leucine	94.42
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	94.31
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	93.95
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	93.67
KOG2997	366	consensus F-box protein FBX9 [General function pre	93.28
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	93.05
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	93.03
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	92.79
KOG0617	264	consensus Ras suppressor protein (contains leucine	92.74
KOG2982	418	consensus Uncharacterized conserved protein [Funct	91.25
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	90.41
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.4
PRK15386	426	type III secretion protein GogB; Provisional	90.11
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	89.88
KOG0472	565	consensus Leucine-rich repeat protein [Function un	89.71
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	89.33
KOG3864	221	consensus Uncharacterized conserved protein [Funct	88.87
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	88.75
PF13013	109	F-box-like_2: F-box-like domain	88.04
KOG2123	388	consensus Uncharacterized conserved protein [Funct	87.82
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	87.69
KOG4237	498	consensus Extracellular matrix protein slit, conta	86.73
KOG0472	565	consensus Leucine-rich repeat protein [Function un	86.19
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	85.97
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	83.09
KOG2123	388	consensus Uncharacterized conserved protein [Funct	82.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	82.26
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	80.89
PLN03150	623	hypothetical protein; Provisional	80.47
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	80.32

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=5e-18  Score=149.36  Aligned_cols=275  Identities=20%  Similarity=0.260  Sum_probs=155.3

Q ss_pred             CCCCChHHHHHHHhcCChHHHHHHhhhhhhhhhhcccCc---eeeEecCccccccCCCCchhhHHHHHHHHHHHHHhccC
Q 014317           16 INRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTN---SLEFDASESLWNVGFGNLEQERSKYINWVNNVLELHRG   92 (427)
Q Consensus        16 is~LPd~iL~~Ils~L~~~d~~r~s~vskrW~~lw~~~~---~L~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~   92 (427)
                      |+.|||||+..||+.|+.+|..+.+.|||||.++-+.-.   .+++..+.+.           .    ....+.+.  +|
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~-----------p----~~l~~l~~--rg  160 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIH-----------P----DVLGRLLS--RG  160 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccC-----------h----hHHHHHHh--CC
Confidence            899999999999999999999999999999998633211   1333333222           2    22223322  24


Q ss_pred             CCeeEEEEEEecCCCCCccHHHHHHHHhcCCceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEeeEEe
Q 014317           93 STINEFKVRFDLCDFHQSDITNWVYTVLGKRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNV  172 (427)
Q Consensus        93 ~~l~~l~l~~~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~  172 (427)
                        |..+++.-...+ + ..+... ....+..+++++++.......   .+- .+         ...|..||.|.|.+.++
T Consensus       161 --V~v~Rlar~~~~-~-prlae~-~~~frsRlq~lDLS~s~it~s---tl~-~i---------Ls~C~kLk~lSlEg~~L  222 (419)
T KOG2120|consen  161 --VIVFRLARSFMD-Q-PRLAEH-FSPFRSRLQHLDLSNSVITVS---TLH-GI---------LSQCSKLKNLSLEGLRL  222 (419)
T ss_pred             --eEEEEcchhhhc-C-chhhhh-hhhhhhhhHHhhcchhheeHH---HHH-HH---------HHHHHhhhhcccccccc
Confidence              555554311111 1 111111 122345678888876521110   000 01         24678899999998888


Q ss_pred             ChhhHHHHHhcCCccceeeeccCCCceeEE---EecCccccceEEEEecCCccEEE-----EECCceeEEEEeeeeeee-
Q 014317          173 NGKDIELFIQNCPLLDRLCVDHSKTLVRLR---VIGSSIQLKYLEIQSCYLMEEIE-----ISAPSLLSFRYYGQAIKI-  243 (427)
Q Consensus       173 ~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~---i~~~~~~L~~L~l~~c~~l~~~~-----i~~p~L~~L~~~~~~~~~-  243 (427)
                      .|.-... ++.-..|++|+|.+|.|+..-.   +-.+|++|..|.+++|....+.+     -..|+|..|.++|+.-.+ 
T Consensus       223 dD~I~~~-iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~  301 (419)
T KOG2120|consen  223 DDPIVNT-IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ  301 (419)
T ss_pred             CcHHHHH-HhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh
Confidence            7763333 5566889999999998876422   22367889999999887544321     124788888887763221 


Q ss_pred             ------eccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCCCceeEEEEEEEccCCCC
Q 014317          244 ------NIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKLIDLRLRVTTPNRES  315 (427)
Q Consensus       244 ------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~  315 (427)
                            ....+|+|.+++++.+-.  +.......+..++.|+.|.++.|..+.  ..-.+...|.|++|++...  .  .
T Consensus       302 ~sh~~tL~~rcp~l~~LDLSD~v~--l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~--v--s  375 (419)
T KOG2120|consen  302 KSHLSTLVRRCPNLVHLDLSDSVM--LKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC--V--S  375 (419)
T ss_pred             hhHHHHHHHhCCceeeeccccccc--cCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc--c--C
Confidence                  123466666666654432  112222333466666666666665554  2222345566666665221  1  1


Q ss_pred             hHHHHHHHHhCCCccEE
Q 014317          316 LLGLTCIMKACPFLQKL  332 (427)
Q Consensus       316 ~~~l~~ll~~~p~L~~L  332 (427)
                      ...+.-+.+.||+|+.-
T Consensus       376 dt~mel~~e~~~~lkin  392 (419)
T KOG2120|consen  376 DTTMELLKEMLSHLKIN  392 (419)
T ss_pred             chHHHHHHHhCcccccc
Confidence            12234455566665543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.67  E-value=5.8e-18  Score=155.39  Aligned_cols=345  Identities=16%  Similarity=0.160  Sum_probs=219.6

Q ss_pred             CCCChHHHHHHHhcCChHHHHHHhhhhhhhhhh------cccCceeeEecCccccccCCCCchhhHHHHHHHHHHHHHhc
Q 014317           17 NRLPDDILVNIISHLTLKEAARTSVLSNRWRNL------WTFTNSLEFDASESLWNVGFGNLEQERSKYINWVNNVLELH   90 (427)
Q Consensus        17 s~LPd~iL~~Ils~L~~~d~~r~s~vskrW~~l------w~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~   90 (427)
                      -.||+|++..|||+|+++...|++.+|+-|..+      |....-.+|-.+            .+..+    | ..+.+|
T Consensus        73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rD------------v~g~V----V-~~~~~R  135 (483)
T KOG4341|consen   73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRD------------VDGGV----V-ENMISR  135 (483)
T ss_pred             ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhc------------CCCcc----e-ehHhhh
Confidence            369999999999999999999999999999876      554432222221            12222    2 223344


Q ss_pred             cCCCeeEEEEEEecCCCCCccHHHHHHHH-hcCCceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEee
Q 014317           91 RGSTINEFKVRFDLCDFHQSDITNWVYTV-LGKRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKT  169 (427)
Q Consensus        91 ~~~~l~~l~l~~~~~~~~~~~~~~wl~~~-~~~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~  169 (427)
                      .|..+++++++......+    ...-..+ ..+++++|.+..+.       .+-...+.     .....++.|+.|.|..
T Consensus       136 cgg~lk~LSlrG~r~v~~----sslrt~~~~CpnIehL~l~gc~-------~iTd~s~~-----sla~~C~~l~~l~L~~  199 (483)
T KOG4341|consen  136 CGGFLKELSLRGCRAVGD----SSLRTFASNCPNIEHLALYGCK-------KITDSSLL-----SLARYCRKLRHLNLHS  199 (483)
T ss_pred             hccccccccccccccCCc----chhhHHhhhCCchhhhhhhcce-------eccHHHHH-----HHHHhcchhhhhhhcc
Confidence            455599999976542221    1222222 34689999876653       12111111     0135789999999999


Q ss_pred             EE-eChhhHHHHHhcCCccceeeeccCCCceeEEEe---cCccccceEEEEecCCccE-----EEEECCceeEEEEeee-
Q 014317          170 VN-VNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVI---GSSIQLKYLEIQSCYLMEE-----IEISAPSLLSFRYYGQ-  239 (427)
Q Consensus       170 ~~-~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~---~~~~~L~~L~l~~c~~l~~-----~~i~~p~L~~L~~~~~-  239 (427)
                      |. +++..++.+..+||+|+.|++.+|+.+..-.+.   ..+..|+.+...+|...+.     +.-.++-+.++++..+ 
T Consensus       200 c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~  279 (483)
T KOG4341|consen  200 CSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCN  279 (483)
T ss_pred             cchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhc
Confidence            65 667788889999999999999999876542222   2456677777777765321     1112233444442222 


Q ss_pred             -----eeeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee---cccccCCCCceeEEEEEEEcc
Q 014317          240 -----AIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY---MQFSLFELPKLIDLRLRVTTP  311 (427)
Q Consensus       240 -----~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~~  311 (427)
                           .....-..+-.|+.+....+..- -+..+.++.+.+++|+.|.+..|....   ....-..++.|+.|.++..+.
T Consensus       280 ~lTD~~~~~i~~~c~~lq~l~~s~~t~~-~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~  358 (483)
T KOG4341|consen  280 QLTDEDLWLIACGCHALQVLCYSSCTDI-TDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGL  358 (483)
T ss_pred             cccchHHHHHhhhhhHhhhhcccCCCCC-chHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccce
Confidence                 11112223445666665554431 234566777899999999999987655   112226778899988855433


Q ss_pred             CCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEeceecCccHHHHHHHHHhccccccceEE
Q 014317          312 NRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLII  391 (427)
Q Consensus       312 ~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i  391 (427)
                      ..  ...+..+-.+||.|++|+++.|.....+|...-....|...+|..+++.+......+.-   ..+.++++||.+.+
T Consensus       359 ~~--d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L---e~l~~c~~Leri~l  433 (483)
T KOG4341|consen  359 IT--DGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL---EHLSICRNLERIEL  433 (483)
T ss_pred             eh--hhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH---HHHhhCcccceeee
Confidence            32  22477888899999999998664333233322112357889999999999876643222   45678999999999


Q ss_pred             Eeeccccch
Q 014317          392 EPSRYVRKK  400 (427)
Q Consensus       392 ~~~~~~~~~  400 (427)
                      ..+..+.+.
T Consensus       434 ~~~q~vtk~  442 (483)
T KOG4341|consen  434 IDCQDVTKE  442 (483)
T ss_pred             echhhhhhh
Confidence            888877654

>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members

Probab=98.85  E-value=2.8e-09  Score=70.71  Aligned_cols=43  Identities=40%  Similarity=0.746  Sum_probs=41.7

Q ss_pred             CCCCccCCccEEEEeceecCccHHHHHHHHHhccccccceEEE
Q 014317          350 FPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIE  392 (427)
Q Consensus       350 ~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i~  392 (427)
                      .|+|..+||+.|++.||.|..+|+++++|+++||++||+|.|.
T Consensus         8 ~p~Cl~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~   50 (51)
T PF08387_consen    8 VPECLLSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS   50 (51)
T ss_pred             CccchhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence            6899999999999999999999999999999999999999996

Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.76  E-value=7.7e-09  Score=67.72  Aligned_cols=37  Identities=38%  Similarity=0.656  Sum_probs=32.1

Q ss_pred             CCCCChHHHHHHHhcCChHHHHHHhhhhhhhhhhccc
Q 014317           16 INRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTF   52 (427)
Q Consensus        16 is~LPd~iL~~Ils~L~~~d~~r~s~vskrW~~lw~~   52 (427)
                      |+.||+||+.+||++|+.+|.++++.|||+|+++...
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~   37 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAND   37 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTC
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCC
Confidence            6789999999999999999999999999999987543

>smart00579 FBD domain in FBox and BRCT domain containing plant proteins

Probab=98.68  E-value=5.2e-08  Score=70.28  Aligned_cols=69  Identities=25%  Similarity=0.386  Sum_probs=54.3

Q ss_pred             CCccCCccEEEEeceecCccHHHHHHHHHhccccccceEEEeeccccchhhhhhhh--hccCCCCCceEEEE
Q 014317          352 KYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIEPSRYVRKKVLRNCVK--MLEAKVPHSVKLIV  421 (427)
Q Consensus       352 ~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~  421 (427)
                      +|...+|+.|+|.+|.|.++|+++++||++||+.||+|+|........... +-.+  ....++++..++.|
T Consensus         1 ~cl~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~~~~~~~-~i~~~L~~~~~aS~~c~i~~   71 (72)
T smart00579        1 ECLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDDEKL-EILKELLSLPRASSSCQVQF   71 (72)
T ss_pred             CcchheEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecCCccHHH-HHHHHHHhCcCCCCceEEEe
Confidence            377889999999999999999999999999999999999998876544321 1122  12256788888876

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.54  E-value=5.7e-08  Score=106.10  Aligned_cols=217  Identities=18%  Similarity=0.104  Sum_probs=124.8

Q ss_pred             CCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCCccEEE---EECCceeE
Q 014317          158 GIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYLMEEIE---ISAPSLLS  233 (427)
Q Consensus       158 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~~~---i~~p~L~~  233 (427)
                      .+++|+.|+|+++.+.+..-   ....+.|+.|++.++.....+ ..-..+++|+.|.++++.-...+.   -..++|++
T Consensus       116 ~l~~L~~L~Ls~n~l~~~~p---~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  192 (968)
T PLN00113        116 TSSSLRYLNLSNNNFTGSIP---RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF  192 (968)
T ss_pred             cCCCCCEEECcCCccccccC---ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence            66788888887776543210   134677888888776533211 111234678888887765221111   13477888


Q ss_pred             EEEeeeee----eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeEEEEEE
Q 014317          234 FRYYGQAI----KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLRV  308 (427)
Q Consensus       234 L~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~  308 (427)
                      |++.++..    +..+.+++.|+.+++..+...   ..+...+..+++|+.|++++|.-.. .+..+..+++|++|.++.
T Consensus       193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  269 (968)
T PLN00113        193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS---GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQ  269 (968)
T ss_pred             eeccCCCCcCcCChHHcCcCCccEEECcCCccC---CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcC
Confidence            88776532    334566777888877766522   2233334677888888888743222 556667777888888754


Q ss_pred             EccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCC--CccCCccEEEEeceecCccHHHHHHHHHhccccc
Q 014317          309 TTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPK--YSHQHLKVVELHGFLGRQFDVELAQYLFQNATML  386 (427)
Q Consensus       309 ~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~--~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L  386 (427)
                      +.-.. .   ++.-+.++++|++|+++.+....   .    .|.  ....+|+.+.+.+..-..    .....+.+.+.|
T Consensus       270 n~l~~-~---~p~~l~~l~~L~~L~Ls~n~l~~---~----~p~~~~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L  334 (968)
T PLN00113        270 NKLSG-P---IPPSIFSLQKLISLDLSDNSLSG---E----IPELVIQLQNLEILHLFSNNFTG----KIPVALTSLPRL  334 (968)
T ss_pred             Ceeec-c---CchhHhhccCcCEEECcCCeecc---C----CChhHcCCCCCcEEECCCCccCC----cCChhHhcCCCC
Confidence            32111 1   22334567888888887543211   1    221  134678888776542111    111335678999


Q ss_pred             cceEEEeec
Q 014317          387 EKLIIEPSR  395 (427)
Q Consensus       387 ~~l~i~~~~  395 (427)
                      +.+.+..+.
T Consensus       335 ~~L~L~~n~  343 (968)
T PLN00113        335 QVLQLWSNK  343 (968)
T ss_pred             CEEECcCCC
Confidence            999987554

>PLN03210 Resistant to P

Probab=98.46  E-value=1.5e-07  Score=103.85  Aligned_cols=86  Identities=19%  Similarity=0.211  Sum_probs=43.8

Q ss_pred             CCCCCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEe-cCccccceEEEEecCCccEEEE--EC
Q 014317          152 SGRGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVI-GSSIQLKYLEIQSCYLMEEIEI--SA  228 (427)
Q Consensus       152 lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~-~~~~~L~~L~l~~c~~l~~~~i--~~  228 (427)
                      +|.++..+++|+.|+|.++..-. .+.. ++.+++|+.|++.+|..+..+.-. ..+++|+.|.+++|..++.+..  ..
T Consensus       626 L~~~~~~l~~Lk~L~Ls~~~~l~-~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l  703 (1153)
T PLN03210        626 LWDGVHSLTGLRNIDLRGSKNLK-EIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINL  703 (1153)
T ss_pred             cccccccCCCCCEEECCCCCCcC-cCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCC
Confidence            34555677788888877643111 0111 445677777777776654422111 1235566666666554444322  23


Q ss_pred             CceeEEEEeee
Q 014317          229 PSLLSFRYYGQ  239 (427)
Q Consensus       229 p~L~~L~~~~~  239 (427)
                      ++|+.|.+.|+
T Consensus       704 ~sL~~L~Lsgc  714 (1153)
T PLN03210        704 KSLYRLNLSGC  714 (1153)
T ss_pred             CCCCEEeCCCC
Confidence            45555555443

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.40  E-value=3e-07  Score=100.49  Aligned_cols=220  Identities=19%  Similarity=0.139  Sum_probs=144.4

Q ss_pred             CCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCCccEEE---EECCcee
Q 014317          157 SGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYLMEEIE---ISAPSLL  232 (427)
Q Consensus       157 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~~~---i~~p~L~  232 (427)
                      ..+++|++|+|.++.+... +...+..+++|+.|++.++.....+ ..-..+++|+.|.+++|.-...+.   -..++|+
T Consensus       137 ~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  215 (968)
T PLN00113        137 GSIPNLETLDLSNNMLSGE-IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK  215 (968)
T ss_pred             cccCCCCEEECcCCccccc-CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence            4689999999999887543 2233678999999999988643221 111235789999999886322221   1347899


Q ss_pred             EEEEeeee----eeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeEEEEE
Q 014317          233 SFRYYGQA----IKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLR  307 (427)
Q Consensus       233 ~L~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~  307 (427)
                      .|.+.++.    .+..+.++++|+.+++..+..   ...+...+..+++|+.|.+..+.-.. .+..+..+++|++|+++
T Consensus       216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l---~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  292 (968)
T PLN00113        216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL---TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS  292 (968)
T ss_pred             EEECcCCccCCcCChhHhcCCCCCEEECcCcee---ccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECc
Confidence            99987763    234567889999999987763   22334445788999999999843222 56666778899999985


Q ss_pred             EEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCC--CCccCCccEEEEeceecCccHHHHHHHHHhcccc
Q 014317          308 VTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFP--KYSHQHLKVVELHGFLGRQFDVELAQYLFQNATM  385 (427)
Q Consensus       308 ~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~--~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~  385 (427)
                      .+.-.. .   ++..+..+++|+.|++..+....   .    .|  -....+|+.+.+.+..-.. +   ....+...+.
T Consensus       293 ~n~l~~-~---~p~~~~~l~~L~~L~l~~n~~~~---~----~~~~~~~l~~L~~L~L~~n~l~~-~---~p~~l~~~~~  357 (968)
T PLN00113        293 DNSLSG-E---IPELVIQLQNLEILHLFSNNFTG---K----IPVALTSLPRLQVLQLWSNKFSG-E---IPKNLGKHNN  357 (968)
T ss_pred             CCeecc-C---CChhHcCCCCCcEEECCCCccCC---c----CChhHhcCCCCCEEECcCCCCcC-c---CChHHhCCCC
Confidence            432111 1   34456789999999997653211   1    11  1235678888887643211 1   1134567789


Q ss_pred             ccceEEEeec
Q 014317          386 LEKLIIEPSR  395 (427)
Q Consensus       386 L~~l~i~~~~  395 (427)
                      |+.+.+..+.
T Consensus       358 L~~L~Ls~n~  367 (968)
T PLN00113        358 LTVLDLSTNN  367 (968)
T ss_pred             CcEEECCCCe
Confidence            9999986543

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.35  E-value=1.6e-07  Score=61.76  Aligned_cols=38  Identities=42%  Similarity=0.656  Sum_probs=32.0

Q ss_pred             cCCCCChHHHHHHHhcCChHHHHHHhhhhhhhhhhccc
Q 014317           15 LINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTF   52 (427)
Q Consensus        15 ~is~LPd~iL~~Ils~L~~~d~~r~s~vskrW~~lw~~   52 (427)
                      .|++||+|++.+|+++|+.+|.++++.|||+|+++...
T Consensus         2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~   39 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS   39 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred             CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence            36789999999999999999999999999999998664

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>PLN03210 Resistant to P

Probab=98.33  E-value=3.6e-07  Score=100.79  Aligned_cols=104  Identities=14%  Similarity=0.150  Sum_probs=59.8

Q ss_pred             CCCCCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEEE---C
Q 014317          152 SGRGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEIS---A  228 (427)
Q Consensus       152 lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~---~  228 (427)
                      +|..+ .+.+|+.|+|.+..+..  +..-+..+++|+.|++.+|..+..+.-.+.+++|+.|.+.+|..+..+...   .
T Consensus       604 lP~~f-~~~~L~~L~L~~s~l~~--L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L  680 (1153)
T PLN03210        604 MPSNF-RPENLVKLQMQGSKLEK--LWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYL  680 (1153)
T ss_pred             CCCcC-CccCCcEEECcCccccc--cccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhcc
Confidence            34443 45778888887765432  111235677888888877765443322223467888888887766554322   3


Q ss_pred             CceeEEEEeeee----eeeeccCCcccceeeeeec
Q 014317          229 PSLLSFRYYGQA----IKINIENVPQLVDVSIRGS  259 (427)
Q Consensus       229 p~L~~L~~~~~~----~~~~~~~~~~L~~l~l~~~  259 (427)
                      ++|+.|++.++.    .+.. .++++|+.+.+..+
T Consensus       681 ~~L~~L~L~~c~~L~~Lp~~-i~l~sL~~L~Lsgc  714 (1153)
T PLN03210        681 NKLEDLDMSRCENLEILPTG-INLKSLYRLNLSGC  714 (1153)
T ss_pred             CCCCEEeCCCCCCcCccCCc-CCCCCCCEEeCCCC
Confidence            677777777652    1111 14555666666554

syringae 6; Provisional

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=1e-08  Score=91.26  Aligned_cols=204  Identities=14%  Similarity=0.150  Sum_probs=124.2

Q ss_pred             CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE--EEecCccccceEEEEecCCccEEEEECCceeEEEEe
Q 014317          160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL--RVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYY  237 (427)
Q Consensus       160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l--~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~~~  237 (427)
                      ..|+.|+|+...++...+..+++.|..|+.|.|.+-...+.+  .++. ..+|+.|.++.|.++....+           
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~-----------  252 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENAL-----------  252 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHH-----------
Confidence            469999999999999999999999999999999887655543  2222 26899999999887554321           


Q ss_pred             eeeeeeeccCCcccceeeeeeccccccchhhcccc-ccCCCceEEEEeccce-ee---cccccCCCCceeEEEEEEEccC
Q 014317          238 GQAIKINIENVPQLVDVSIRGSHTFRVTYFVGPII-SCFPQLKTLELDSCNE-VY---MQFSLFELPKLIDLRLRVTTPN  312 (427)
Q Consensus       238 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~-~~~~~l~~L~l~~~~~-~~---~~~~~~~~~~L~~L~l~~~~~~  312 (427)
                          ...+.++.+|.++.+++++...  +.+..++ .--++++.|.|++|.. +.   +.-....+++|.+|+|+-+..-
T Consensus       253 ----~ll~~scs~L~~LNlsWc~l~~--~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l  326 (419)
T KOG2120|consen  253 ----QLLLSSCSRLDELNLSWCFLFT--EKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML  326 (419)
T ss_pred             ----HHHHHhhhhHhhcCchHhhccc--hhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccccc
Confidence                2245667777777777766432  1122222 3345777777877532 21   2222367788888887543322


Q ss_pred             CCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEeceecCccHHHHHHHHHhccccccceEEE
Q 014317          313 RESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIE  392 (427)
Q Consensus       313 ~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i~  392 (427)
                      .   .++...+..+|.|++|+++.|-..  +++..  +.-....+|..+.+.|+-.. .-++   .+.+.++.|+-=+-.
T Consensus       327 ~---~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~--~~l~s~psl~yLdv~g~vsd-t~me---l~~e~~~~lkin~q~  395 (419)
T KOG2120|consen  327 K---NDCFQEFFKFNYLQHLSLSRCYDI--IPETL--LELNSKPSLVYLDVFGCVSD-TTME---LLKEMLSHLKINCQH  395 (419)
T ss_pred             C---chHHHHHHhcchheeeehhhhcCC--ChHHe--eeeccCcceEEEEeccccCc-hHHH---HHHHhCcccccccee
Confidence            2   134556667888888888765321  11100  00012446777777776322 1233   555666666544443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.28  E-value=1.4e-08  Score=94.40  Aligned_cols=218  Identities=16%  Similarity=0.152  Sum_probs=101.1

Q ss_pred             CCCCCCcEEEEeeEE-eChhhHHHHHhcCCccceeeeccCCCceeEE---EecCccccceEEEEecCCccEEEEECCcee
Q 014317          157 SGIKFLRCLHFKTVN-VNGKDIELFIQNCPLLDRLCVDHSKTLVRLR---VIGSSIQLKYLEIQSCYLMEEIEISAPSLL  232 (427)
Q Consensus       157 ~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~---i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~  232 (427)
                      .++|+.+.|.+.+|. +++..+..+..-|+.|+.|++..|..+++..   +...|++|+.|.+++|+.+..=        
T Consensus       161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~--------  232 (483)
T KOG4341|consen  161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGN--------  232 (483)
T ss_pred             hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcC--------
Confidence            345555555555543 4444555555555555555555555444321   1224455555555555543320        


Q ss_pred             EEEEeeeeeeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceeec---ccccCCCCceeEEEEEEE
Q 014317          233 SFRYYGQAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYM---QFSLFELPKLIDLRLRVT  309 (427)
Q Consensus       233 ~L~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~---~~~~~~~~~L~~L~l~~~  309 (427)
                             .+.....++..++++...++.... ...+......++-+.++++..|..+.-   ...-..+..|+.|..+. 
T Consensus       233 -------gv~~~~rG~~~l~~~~~kGC~e~~-le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~-  303 (483)
T KOG4341|consen  233 -------GVQALQRGCKELEKLSLKGCLELE-LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSS-  303 (483)
T ss_pred             -------cchHHhccchhhhhhhhccccccc-HHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccC-
Confidence                   111112223333333333222111 011111123444455555555543331   11113344455555422 


Q ss_pred             ccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEece-ecCccHHHHHHHHHhccccccc
Q 014317          310 TPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGF-LGRQFDVELAQYLFQNATMLEK  388 (427)
Q Consensus       310 ~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f-~g~~~e~~~~~~ll~~a~~L~~  388 (427)
                       +.+.....+..+-++|++|+.|.++.+..-...+- .. .. -...+|+.+.+.++ .|.+..+.   .+-.++|.|++
T Consensus       304 -~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~f-t~-l~-rn~~~Le~l~~e~~~~~~d~tL~---sls~~C~~lr~  376 (483)
T KOG4341|consen  304 -CTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGF-TM-LG-RNCPHLERLDLEECGLITDGTLA---SLSRNCPRLRV  376 (483)
T ss_pred             -CCCCchHHHHHHhcCCCceEEEeccccchhhhhhh-hh-hh-cCChhhhhhcccccceehhhhHh---hhccCCchhcc
Confidence             33333444666777888888888877642110000 00 01 12346666666554 45555444   66678888888


Q ss_pred             eEEEeecccc
Q 014317          389 LIIEPSRYVR  398 (427)
Q Consensus       389 l~i~~~~~~~  398 (427)
                      +.++.+..+.
T Consensus       377 lslshce~it  386 (483)
T KOG4341|consen  377 LSLSHCELIT  386 (483)
T ss_pred             CChhhhhhhh
Confidence            8887665554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.27  E-value=3.9e-07  Score=86.25  Aligned_cols=87  Identities=11%  Similarity=-0.028  Sum_probs=49.4

Q ss_pred             CCceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEeeEEeC--hhh---HHHHHhcCCccceeeeccCC
Q 014317          122 KRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVN--GKD---IELFIQNCPLLDRLCVDHSK  196 (427)
Q Consensus       122 ~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~--~~~---l~~ll~~cp~Le~L~l~~c~  196 (427)
                      .+++.+.+..+.......-.++          .....+++|++|.+.+..+.  ...   +...+..++.|+.|.+.+|.
T Consensus        23 ~~L~~l~l~~~~l~~~~~~~i~----------~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~   92 (319)
T cd00116          23 LCLQVLRLEGNTLGEEAAKALA----------SALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA   92 (319)
T ss_pred             hhccEEeecCCCCcHHHHHHHH----------HHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC
Confidence            3588888876532211001112          22346678899988887766  333   33345567799999998876


Q ss_pred             CceeE-----EEecCccccceEEEEecC
Q 014317          197 TLVRL-----RVIGSSIQLKYLEIQSCY  219 (427)
Q Consensus       197 ~~~~l-----~i~~~~~~L~~L~l~~c~  219 (427)
                      .....     .+... ++|++|.+++|.
T Consensus        93 ~~~~~~~~~~~l~~~-~~L~~L~ls~~~  119 (319)
T cd00116          93 LGPDGCGVLESLLRS-SSLQELKLNNNG  119 (319)
T ss_pred             CChhHHHHHHHHhcc-CcccEEEeeCCc
Confidence            43211     11111 347777777765

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.24  E-value=1.4e-06  Score=55.06  Aligned_cols=34  Identities=44%  Similarity=0.692  Sum_probs=31.9

Q ss_pred             CChHHHHHHHhcCChHHHHHHhhhhhhhhhhccc
Q 014317           19 LPDDILVNIISHLTLKEAARTSVLSNRWRNLWTF   52 (427)
Q Consensus        19 LPd~iL~~Ils~L~~~d~~r~s~vskrW~~lw~~   52 (427)
                      ||+|++.+|+++|+.+|..+++.|||+|+.+...
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~   34 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS   34 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            7999999999999999999999999999998654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.11  E-value=7.5e-07  Score=84.31  Aligned_cols=236  Identities=16%  Similarity=0.137  Sum_probs=147.1

Q ss_pred             CCCCCCcEEEEeeEEeChh---hHHHHHhcCCccceeeeccCCCce--e-E-EE---ecCccccceEEEEecCCcc----
Q 014317          157 SGIKFLRCLHFKTVNVNGK---DIELFIQNCPLLDRLCVDHSKTLV--R-L-RV---IGSSIQLKYLEIQSCYLME----  222 (427)
Q Consensus       157 ~~~~~L~~L~L~~~~~~~~---~l~~ll~~cp~Le~L~l~~c~~~~--~-l-~i---~~~~~~L~~L~l~~c~~l~----  222 (427)
                      ..+++|+.|.+.++.+.+.   .+...+...|.|++|.+.++....  . + .+   -..+++|+.|.+++|..-.    
T Consensus        20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~   99 (319)
T cd00116          20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG   99 (319)
T ss_pred             HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence            3567799999999998765   355566778899999998764321  0 0 00   0124689999999887321    


Q ss_pred             ---EEEEECCceeEEEEeeeeee--------eeccCC-cccceeeeeeccccc-cchhhccccccCCCceEEEEecccee
Q 014317          223 ---EIEISAPSLLSFRYYGQAIK--------INIENV-PQLVDVSIRGSHTFR-VTYFVGPIISCFPQLKTLELDSCNEV  289 (427)
Q Consensus       223 ---~~~i~~p~L~~L~~~~~~~~--------~~~~~~-~~L~~l~l~~~~~~~-~~~~~~~~~~~~~~l~~L~l~~~~~~  289 (427)
                         .+.-. |+|++|+++++...        ..+... +.|+++++..+.... ....+...+..+++++.|++++| .+
T Consensus       100 ~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l  177 (319)
T cd00116         100 VLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN-GI  177 (319)
T ss_pred             HHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC-CC
Confidence               11112 66999999876433        123445 789999998887542 11223444567789999999884 33


Q ss_pred             e------cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccc---cCCCCccCCccE
Q 014317          290 Y------MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQ---QFPKYSHQHLKV  360 (427)
Q Consensus       290 ~------~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~---~~~~~~~~~L~~  360 (427)
                      .      ++..+..+++|++|+++.+.-.......+...+..+|+|+.|++..+.....  ....   ..+. ....|+.
T Consensus       178 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~--~~~~l~~~~~~-~~~~L~~  254 (319)
T cd00116         178 GDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA--GAAALASALLS-PNISLLT  254 (319)
T ss_pred             chHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH--HHHHHHHHHhc-cCCCceE
Confidence            3      2334456679999999655333323344566677889999999987532110  0000   0111 2468999


Q ss_pred             EEEeceecC-ccHHHHHHHHHhccccccceEEEeecccc
Q 014317          361 VELHGFLGR-QFDVELAQYLFQNATMLEKLIIEPSRYVR  398 (427)
Q Consensus       361 v~i~~f~g~-~~e~~~~~~ll~~a~~L~~l~i~~~~~~~  398 (427)
                      +.+.+..-. .....+++. +...+.|+.+.+..+.-..
T Consensus       255 L~l~~n~i~~~~~~~l~~~-~~~~~~L~~l~l~~N~l~~  292 (319)
T cd00116         255 LSLSCNDITDDGAKDLAEV-LAEKESLLELDLRGNKFGE  292 (319)
T ss_pred             EEccCCCCCcHHHHHHHHH-HhcCCCccEEECCCCCCcH
Confidence            998876432 233344444 4455899999887665443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.08  E-value=7.4e-07  Score=86.45  Aligned_cols=225  Identities=19%  Similarity=0.237  Sum_probs=118.6

Q ss_pred             CCCCCCCCcEEEEeeEEeChh-hHHHHHhcCCccceeeeccC-------------CCceeEEEec------------Ccc
Q 014317          155 GLSGIKFLRCLHFKTVNVNGK-DIELFIQNCPLLDRLCVDHS-------------KTLVRLRVIG------------SSI  208 (427)
Q Consensus       155 ~~~~~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~l~~c-------------~~~~~l~i~~------------~~~  208 (427)
                      .|..+|.|+.|.|...++..- .+-  +.+.|+|+.|.+...             .+++.++++.            .+.
T Consensus       216 ~Fk~L~~L~~LdLnrN~irive~lt--FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt  293 (873)
T KOG4194|consen  216 SFKRLPKLESLDLNRNRIRIVEGLT--FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT  293 (873)
T ss_pred             Hhhhcchhhhhhccccceeeehhhh--hcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccc
Confidence            455567777777766554321 111  345556666555422             1112121111            124


Q ss_pred             ccceEEEEecCCccEEEEE----CCceeEEEEeeeeee----eeccCCcccceeeeeeccccccchhhccccccCCCceE
Q 014317          209 QLKYLEIQSCYLMEEIEIS----APSLLSFRYYGQAIK----INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKT  280 (427)
Q Consensus       209 ~L~~L~l~~c~~l~~~~i~----~p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~  280 (427)
                      .|+.|.++... ++.++++    +++|+.|+++...+.    ..+..+.+|+++.++.+.   +++.-...+.++.+|+.
T Consensus       294 ~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns---i~~l~e~af~~lssL~~  369 (873)
T KOG4194|consen  294 SLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS---IDHLAEGAFVGLSSLHK  369 (873)
T ss_pred             hhhhhccchhh-hheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc---hHHHHhhHHHHhhhhhh
Confidence            45555555433 5666665    478888877765321    233445667777776665   33333444578888899


Q ss_pred             EEEeccceee--c---ccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCcc
Q 014317          281 LELDSCNEVY--M---QFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSH  355 (427)
Q Consensus       281 L~l~~~~~~~--~---~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~  355 (427)
                      |+|+. +++.  +   ...+..++.|+.|.+..+.-.  ..  -..-+.+.++||+|++..+.-..+..+      .+..
T Consensus       370 LdLr~-N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk--~I--~krAfsgl~~LE~LdL~~NaiaSIq~n------AFe~  438 (873)
T KOG4194|consen  370 LDLRS-NELSWCIEDAAVAFNGLPSLRKLRLTGNQLK--SI--PKRAFSGLEALEHLDLGDNAIASIQPN------AFEP  438 (873)
T ss_pred             hcCcC-CeEEEEEecchhhhccchhhhheeecCceee--ec--chhhhccCcccceecCCCCcceeeccc------cccc
Confidence            99887 6654  2   223355677777777433111  11  123446788899988875432111111      2233


Q ss_pred             CCccEEEEec--eecCccHHHHHHHHHhccccccceEEEeecccc
Q 014317          356 QHLKVVELHG--FLGRQFDVELAQYLFQNATMLEKLIIEPSRYVR  398 (427)
Q Consensus       356 ~~L~~v~i~~--f~g~~~e~~~~~~ll~~a~~L~~l~i~~~~~~~  398 (427)
                      .+|+++.|..  |--.+.-.++...+.++..  +.-.+-.|.++.
T Consensus       439 m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~l--q~sv~a~CayPe  481 (873)
T KOG4194|consen  439 MELKELVMNSSSFLCDCQLKWLAQWLYRRKL--QSSVIAKCAYPE  481 (873)
T ss_pred             chhhhhhhcccceEEeccHHHHHHHHHhccc--ccceeeeccCCc
Confidence            4777777754  4333444455666665443  344444555443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.05  E-value=9.3e-07  Score=80.68  Aligned_cols=255  Identities=17%  Similarity=0.172  Sum_probs=150.6

Q ss_pred             eeEEEEEEecCCCCCccHHHHHHHHhcC--CceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEeeEEe
Q 014317           95 INEFKVRFDLCDFHQSDITNWVYTVLGK--RVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNV  172 (427)
Q Consensus        95 l~~l~l~~~~~~~~~~~~~~wl~~~~~~--~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~  172 (427)
                      +..+.++..  . -..-..+|+....+.  .+++..++-...+... -.+|..+-.   +.+++..+|.|+.|+|++..|
T Consensus        32 ~~~l~lsgn--t-~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~-~Ei~e~L~~---l~~aL~~~~~L~~ldLSDNA~  104 (382)
T KOG1909|consen   32 LTKLDLSGN--T-FGTEAARAIAKVLASKKELREVNLSDMFTGRLK-DEIPEALKM---LSKALLGCPKLQKLDLSDNAF  104 (382)
T ss_pred             eEEEeccCC--c-hhHHHHHHHHHHHhhcccceeeehHhhhcCCcH-HHHHHHHHH---HHHHHhcCCceeEeecccccc
Confidence            666666532  1 223567888776553  5566655443222111 233332210   113345778999999999998


Q ss_pred             Chh---hHHHHHhcCCccceeeeccCCCce--eEEEecCccccceEEEEecCCccEEEEECCceeEEEEeeeee------
Q 014317          173 NGK---DIELFIQNCPLLDRLCVDHSKTLV--RLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYYGQAI------  241 (427)
Q Consensus       173 ~~~---~l~~ll~~cp~Le~L~l~~c~~~~--~l~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~~~~~~~------  241 (427)
                      +.+   .+..++++|..|++|.|.+|---.  .-.+.   .-|..|.+.      .-.-++|+|+.+.+..+..      
T Consensus       105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~---~al~~l~~~------kk~~~~~~Lrv~i~~rNrlen~ga~  175 (382)
T KOG1909|consen  105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG---RALFELAVN------KKAASKPKLRVFICGRNRLENGGAT  175 (382)
T ss_pred             CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH---HHHHHHHHH------hccCCCcceEEEEeeccccccccHH
Confidence            754   688999999999999999995221  11111   123222211      1112456777776654421      


Q ss_pred             --eeeccCCcccceeeeeeccccccc-hhhccccccCCCceEEEEeccceee------cccccCCCCceeEEEEEEEccC
Q 014317          242 --KINIENVPQLVDVSIRGSHTFRVT-YFVGPIISCFPQLKTLELDSCNEVY------MQFSLFELPKLIDLRLRVTTPN  312 (427)
Q Consensus       242 --~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~~~~l~~L~l~~~~~~~------~~~~~~~~~~L~~L~l~~~~~~  312 (427)
                        -..+...|.|+++.+..+....-+ ..+..-+..|++|+.|+|.. +...      +...++.+++|+.|+++.+.-.
T Consensus       176 ~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~LakaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  176 ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVALAKALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHHHHHhcccchheeecccccccc
Confidence              123455688899888877654311 23334457999999999997 5544      5566788899999998766555


Q ss_pred             CCChHHHHH-HHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEecee
Q 014317          313 RESLLGLTC-IMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFL  367 (427)
Q Consensus       313 ~~~~~~l~~-ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f~  367 (427)
                      ..+..++.. +-+..|+|+.|.+.++.-.. ++-...+.+---..+|+.+.+.+.+
T Consensus       255 ~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~-da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  255 NEGAIAFVDALKESAPSLEVLELAGNEITR-DAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             cccHHHHHHHHhccCCCCceeccCcchhHH-HHHHHHHHHHhcchhhHHhcCCccc
Confidence            555555544 44568999999998764211 1110000010125578888887754

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.95  E-value=2.4e-06  Score=83.04  Aligned_cols=172  Identities=17%  Similarity=0.210  Sum_probs=84.4

Q ss_pred             CCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCc--eeEEEecCccccceEEEEecCC--------------
Q 014317          157 SGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTL--VRLRVIGSSIQLKYLEIQSCYL--------------  220 (427)
Q Consensus       157 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~--~~l~i~~~~~~L~~L~l~~c~~--------------  220 (427)
                      ....+|+.|+|.+..+..-.-+. ++..|.||.|+|+.....  ..-.++.. .++++|.+.+.+-              
T Consensus       122 ~~sghl~~L~L~~N~I~sv~se~-L~~l~alrslDLSrN~is~i~~~sfp~~-~ni~~L~La~N~It~l~~~~F~~lnsL  199 (873)
T KOG4194|consen  122 HESGHLEKLDLRHNLISSVTSEE-LSALPALRSLDLSRNLISEIPKPSFPAK-VNIKKLNLASNRITTLETGHFDSLNSL  199 (873)
T ss_pred             ccccceeEEeeeccccccccHHH-HHhHhhhhhhhhhhchhhcccCCCCCCC-CCceEEeeccccccccccccccccchh
Confidence            33455888888877654321111 445666666666543211  11111111 3455555544320              


Q ss_pred             ---------ccEEEE---E-CCceeEEEEeeeeee----eeccCCcccceeeeeeccccccchhhccccccCCCceEEEE
Q 014317          221 ---------MEEIEI---S-APSLLSFRYYGQAIK----INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLEL  283 (427)
Q Consensus       221 ---------l~~~~i---~-~p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l  283 (427)
                               +..+.+   . -|+|+.|++....++    ..+.++|+|+.+.+..++...+   -.+.+-.+.+++.|+|
T Consensus       200 ~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL---~DG~Fy~l~kme~l~L  276 (873)
T KOG4194|consen  200 LTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKL---DDGAFYGLEKMEHLNL  276 (873)
T ss_pred             eeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccc---cCcceeeecccceeec
Confidence                     121111   1 355555555544322    2345566666666655553221   1223345666677776


Q ss_pred             eccceee--cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEecc
Q 014317          284 DSCNEVY--MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLND  338 (427)
Q Consensus       284 ~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~  338 (427)
                      .. +.+.  ....+..+..|++|+|+.+.-......    -=..|++|+.|+++.+.
T Consensus       277 ~~-N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d----~WsftqkL~~LdLs~N~  328 (873)
T KOG4194|consen  277 ET-NRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID----SWSFTQKLKELDLSSNR  328 (873)
T ss_pred             cc-chhhhhhcccccccchhhhhccchhhhheeecc----hhhhcccceeEeccccc
Confidence            65 4443  233455666677777654422221111    11468889999888764

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.93  E-value=2.2e-06  Score=78.29  Aligned_cols=225  Identities=17%  Similarity=0.170  Sum_probs=128.6

Q ss_pred             CCCCCcEEEEeeEEeChh---hHHHHHhcCCccceeeeccCC-CceeEEEecCccccceEEEEecCCccEEEEECCceeE
Q 014317          158 GIKFLRCLHFKTVNVNGK---DIELFIQNCPLLDRLCVDHSK-TLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLS  233 (427)
Q Consensus       158 ~~~~L~~L~L~~~~~~~~---~l~~ll~~cp~Le~L~l~~c~-~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~  233 (427)
                      .+.+++.++|++.+|+.+   .+...+++-+.|++-++++.- +...-.+.   +.|+.|        ...-+.+|+|++
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~---e~L~~l--------~~aL~~~~~L~~   96 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIP---EALKML--------SKALLGCPKLQK   96 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHH---HHHHHH--------HHHHhcCCceeE
Confidence            456788888888888764   455556666666666554321 11101111   112111        112245667777


Q ss_pred             EEEeeeeee--------eeccCCcccceeeeeeccccc-----cc-----hhhccccccCCCceEEEEeccceee-----
Q 014317          234 FRYYGQAIK--------INIENVPQLVDVSIRGSHTFR-----VT-----YFVGPIISCFPQLKTLELDSCNEVY-----  290 (427)
Q Consensus       234 L~~~~~~~~--------~~~~~~~~L~~l~l~~~~~~~-----~~-----~~~~~~~~~~~~l~~L~l~~~~~~~-----  290 (427)
                      ++++++...        -.+.++..|+++.+..+..--     +.     ......+..-+.|+.+.... +...     
T Consensus        97 ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r-Nrlen~ga~  175 (382)
T KOG1909|consen   97 LDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR-NRLENGGAT  175 (382)
T ss_pred             eeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec-cccccccHH
Confidence            777655321        123456777777777765311     00     01233345667788887775 4443     


Q ss_pred             -cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEecee-c
Q 014317          291 -MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFL-G  368 (427)
Q Consensus       291 -~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f~-g  368 (427)
                       +...+...++|+.+.+..+.-.+.....+..-+..||+|+.|+|..+.... .|...-+-+-+..++|+++.+-.|. -
T Consensus       176 ~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~-egs~~LakaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  176 ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL-EGSVALAKALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh-HHHHHHHHHhcccchheeecccccccc
Confidence             344556667888888877766665665666677888999988886432111 1110000112345577777776653 3


Q ss_pred             CccHHHHHHHHHhccccccceEEEeec
Q 014317          369 RQFDVELAQYLFQNATMLEKLIIEPSR  395 (427)
Q Consensus       369 ~~~e~~~~~~ll~~a~~L~~l~i~~~~  395 (427)
                      ++.-.+++..+-+.+|.|+.+.+.++.
T Consensus       255 ~~Ga~a~~~al~~~~p~L~vl~l~gNe  281 (382)
T KOG1909|consen  255 NEGAIAFVDALKESAPSLEVLELAGNE  281 (382)
T ss_pred             cccHHHHHHHHhccCCCCceeccCcch
Confidence            455578888888888888888876554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=2.6e-06  Score=80.03  Aligned_cols=196  Identities=18%  Similarity=0.169  Sum_probs=128.3

Q ss_pred             CceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEeeEEeCh-hhHHHHHhcCCccceeeeccCCCcee-
Q 014317          123 RVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVNG-KDIELFIQNCPLLDRLCVDHSKTLVR-  200 (427)
Q Consensus       123 ~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~l~~c~~~~~-  200 (427)
                      .++++.++++...      .++.       -.....||+++.|+|+..-++. ..+-.++...|+||.|+|+....... 
T Consensus       122 kL~~IsLdn~~V~------~~~~-------~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~  188 (505)
T KOG3207|consen  122 KLREISLDNYRVE------DAGI-------EEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI  188 (505)
T ss_pred             hhhheeecCcccc------ccch-------hhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCc
Confidence            6778888776432      1110       0124679999999999998887 46778899999999999986542211 


Q ss_pred             -EEEecCccccceEEEEecCC----ccEEEEECCceeEEEEeeeee----eeeccCCcccceeeeeeccccccchhhccc
Q 014317          201 -LRVIGSSIQLKYLEIQSCYL----MEEIEISAPSLLSFRYYGQAI----KINIENVPQLVDVSIRGSHTFRVTYFVGPI  271 (427)
Q Consensus       201 -l~i~~~~~~L~~L~l~~c~~----l~~~~i~~p~L~~L~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~  271 (427)
                       -.....++.||.|.++.|.-    +..+....|+|+.|.+.+...    .........|++|+++.+..-  ++.-...
T Consensus       189 ~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li--~~~~~~~  266 (505)
T KOG3207|consen  189 SSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI--DFDQGYK  266 (505)
T ss_pred             cccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc--ccccccc
Confidence             11112447899999999973    334566789999999887631    112233567899998877642  2222233


Q ss_pred             cccCCCceEEEEeccceee---cccc-----cCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317          272 ISCFPQLKTLELDSCNEVY---MQFS-----LFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLN  337 (427)
Q Consensus       272 ~~~~~~l~~L~l~~~~~~~---~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  337 (427)
                      ...+|+|+.|.++. .++.   .+..     ...|++|++|.+..+.-.  ++..+ .-++..++|+.|.+...
T Consensus       267 ~~~l~~L~~Lnls~-tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~--~w~sl-~~l~~l~nlk~l~~~~n  336 (505)
T KOG3207|consen  267 VGTLPGLNQLNLSS-TGIASIAEPDVESLDKTHTFPKLEYLNISENNIR--DWRSL-NHLRTLENLKHLRITLN  336 (505)
T ss_pred             cccccchhhhhccc-cCcchhcCCCccchhhhcccccceeeecccCccc--ccccc-chhhccchhhhhhcccc
Confidence            47889999999887 3333   2322     478899999998554322  22222 23456788888887654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.32  E-value=5.9e-05  Score=77.92  Aligned_cols=213  Identities=16%  Similarity=0.187  Sum_probs=119.9

Q ss_pred             CCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEE---ECCceeEEEEe
Q 014317          161 FLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEI---SAPSLLSFRYY  237 (427)
Q Consensus       161 ~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i---~~p~L~~L~~~  237 (427)
                      +|+..+|.+.......++.+...  .|++|.|.+...........       =.++-+.-++.+ +   .-.+|++|+++
T Consensus        61 ~ltki~l~~~~~~~~~~~~l~~~--~L~sl~LGnl~~~k~~~~~~-------~~idi~~lL~~~-Ln~~sr~nL~~LdI~  130 (699)
T KOG3665|consen   61 NLTKIDLKNVTLQHQTLEMLRKQ--DLESLKLGNLDKIKQDYLDD-------ATIDIISLLKDL-LNEESRQNLQHLDIS  130 (699)
T ss_pred             eeEEeeccceecchhHHHHHhhc--cccccCCcchHhhhhhhhhh-------hhccHHHHHHHH-HhHHHHHhhhhcCcc
Confidence            57777777777776666644433  39999998876543211000       000000000000 0   01344444444


Q ss_pred             eee------eeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceeecccccCCCCceeEEEEEE-Ec
Q 014317          238 GQA------IKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLRV-TT  310 (427)
Q Consensus       238 ~~~------~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~-~~  310 (427)
                      |..      ..-.-.-+|.|+.+.+.+....  ...+.++..++|+|..|++++ .++..-.++..++||+.|.+.. .+
T Consensus       131 G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~--~~dF~~lc~sFpNL~sLDIS~-TnI~nl~GIS~LknLq~L~mrnLe~  207 (699)
T KOG3665|consen  131 GSELFSNGWPKKIGTMLPSLRSLVISGRQFD--NDDFSQLCASFPNLRSLDISG-TNISNLSGISRLKNLQVLSMRNLEF  207 (699)
T ss_pred             ccchhhccHHHHHhhhCcccceEEecCceec--chhHHHHhhccCccceeecCC-CCccCcHHHhccccHHHHhccCCCC
Confidence            421      1111233677777777665432  234667778999999999998 5666446777888888888632 22


Q ss_pred             cCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEeceecCccHHHHHHHHHhccccccceE
Q 014317          311 PNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLI  390 (427)
Q Consensus       311 ~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~  390 (427)
                      .   ....+..+ -+..+|+.|+|+............. .-+|..- |-++.+..+.|++-.-++++.++..=++|+++.
T Consensus       208 e---~~~~l~~L-F~L~~L~vLDIS~~~~~~~~~ii~q-Ylec~~~-LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~  281 (699)
T KOG3665|consen  208 E---SYQDLIDL-FNLKKLRVLDISRDKNNDDTKIIEQ-YLECGMV-LPELRFLDCSGTDINEEILEELLNSHPNLQQIA  281 (699)
T ss_pred             C---chhhHHHH-hcccCCCeeeccccccccchHHHHH-HHHhccc-CccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence            2   22223333 3689999999997643322111111 1133211 334444456788777788889999888888887


Q ss_pred             EE
Q 014317          391 IE  392 (427)
Q Consensus       391 i~  392 (427)
                      ..
T Consensus       282 ~~  283 (699)
T KOG3665|consen  282 AL  283 (699)
T ss_pred             hh
Confidence            54

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.22  E-value=7.1e-05  Score=63.61  Aligned_cols=63  Identities=25%  Similarity=0.141  Sum_probs=29.1

Q ss_pred             ccCCCceEEEEeccceee---cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317          273 SCFPQLKTLELDSCNEVY---MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLN  337 (427)
Q Consensus       273 ~~~~~l~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  337 (427)
                      ..+|+|+.|.+++ +.+.   .-..+..+++|+.|++..+.... ....=..++..+|+|+.|+-...
T Consensus        85 ~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   85 KNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             HH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETTEET
T ss_pred             HhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCCEEc
Confidence            4577777777776 5554   22344667788888875443322 22223457788999999876543

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.08  E-value=0.0008  Score=37.39  Aligned_cols=25  Identities=28%  Similarity=0.668  Sum_probs=22.8

Q ss_pred             CCcEEEEeeEEeChh-hHHHHHhcCC
Q 014317          161 FLRCLHFKTVNVNGK-DIELFIQNCP  185 (427)
Q Consensus       161 ~L~~L~L~~~~~~~~-~l~~ll~~cp  185 (427)
                      +||+|+|.++.+.++ .+++++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            599999999999775 7999999998

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.07  E-value=8.2e-05  Score=70.20  Aligned_cols=62  Identities=15%  Similarity=0.227  Sum_probs=46.0

Q ss_pred             CCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEec-CccccceEEEEecC
Q 014317          158 GIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIG-SSIQLKYLEIQSCY  219 (427)
Q Consensus       158 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~-~~~~L~~L~l~~c~  219 (427)
                      .++.||+|.|..|.++-.++..++..||.|+.|.+........-..+. -+.+|+.|++++..
T Consensus       195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~  257 (505)
T KOG3207|consen  195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN  257 (505)
T ss_pred             hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc
Confidence            578999999999999988899999999999999998764322111111 12578888887765

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.94  E-value=0.0007  Score=61.03  Aligned_cols=216  Identities=12%  Similarity=0.103  Sum_probs=126.9

Q ss_pred             CCCCCcEEEEeeEEeCh-hhHHHHHhcCCccceeeeccCCCceeEE-EecCccccceEEEEecCC----ccEEEEECCce
Q 014317          158 GIKFLRCLHFKTVNVNG-KDIELFIQNCPLLDRLCVDHSKTLVRLR-VIGSSIQLKYLEIQSCYL----MEEIEISAPSL  231 (427)
Q Consensus       158 ~~~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~l~~c~~~~~l~-i~~~~~~L~~L~l~~c~~----l~~~~i~~p~L  231 (427)
                      .+..++.|+|.+..+.+ +++..|+...|.|+.|+|+......++. .+....+|+.|.+.+..-    .+.+.-+-|.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            45789999999999988 4799999999999999998665444332 223446888888876541    12222234777


Q ss_pred             eEEEEeeeeeeeec-------cCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee---cccccCCCCce
Q 014317          232 LSFRYYGQAIKINI-------ENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY---MQFSLFELPKL  301 (427)
Q Consensus       232 ~~L~~~~~~~~~~~-------~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~---~~~~~~~~~~L  301 (427)
                      +.|.++.+..+...       .-.+.+.+++...+... .......+...+|++..+.+..| .++   ..+....++.+
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~-~w~~~~~l~r~Fpnv~sv~v~e~-PlK~~s~ek~se~~p~~  226 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQ-LWLNKNKLSRIFPNVNSVFVCEG-PLKTESSEKGSEPFPSL  226 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHH-HHHHHHhHHhhcccchheeeecC-cccchhhcccCCCCCcc
Confidence            77766554222111       11223444444433321 11234455678999999999874 233   34455566666


Q ss_pred             eEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCC-CCCcccccCCCCccCCccEEEEecee------cCccHHH
Q 014317          302 IDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGR-RLGKKRQQFPKYSHQHLKVVELHGFL------GRQFDVE  374 (427)
Q Consensus       302 ~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~-~~~~~~~~~~~~~~~~L~~v~i~~f~------g~~~e~~  374 (427)
                      --|.|+.+.-+  ++++ +.-|..+|.|..|.+..+.... ..+..+.   -....+|..|++.|=.      -.+.|..
T Consensus       227 ~~LnL~~~~id--swas-vD~Ln~f~~l~dlRv~~~Pl~d~l~~~err---~llIaRL~~v~vLNGskIss~er~dSEr~  300 (418)
T KOG2982|consen  227 SCLNLGANNID--SWAS-VDALNGFPQLVDLRVSENPLSDPLRGGERR---FLLIARLTKVQVLNGSKISSRERKDSERR  300 (418)
T ss_pred             hhhhhcccccc--cHHH-HHHHcCCchhheeeccCCcccccccCCcce---EEEEeeccceEEecCcccchhhhhhhHHH
Confidence            66666543222  3443 4667899999999997654221 1221111   0133456666655421      2267788


Q ss_pred             HHHHHHh
Q 014317          375 LAQYLFQ  381 (427)
Q Consensus       375 ~~~~ll~  381 (427)
                      |++|.+.
T Consensus       301 fVRyym~  307 (418)
T KOG2982|consen  301 FVRYYMS  307 (418)
T ss_pred             HHHHHhh
Confidence            8888875

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=96.83  E-value=0.00013  Score=65.60  Aligned_cols=214  Identities=20%  Similarity=0.218  Sum_probs=127.4

Q ss_pred             CCCCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCce----------------------e---EEEecCc
Q 014317          153 GRGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLV----------------------R---LRVIGSS  207 (427)
Q Consensus       153 p~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~----------------------~---l~i~~~~  207 (427)
                      |-....|.+|+++.++.|..  +.+..+...=|.|+.+.+.+...-.                      .   ..+. ..
T Consensus       207 ~f~l~~f~~l~~~~~s~~~~--~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~d-TW  283 (490)
T KOG1259|consen  207 SFNLNAFRNLKTLKFSALST--ENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSAD-TW  283 (490)
T ss_pred             ccchHHhhhhheeeeeccch--hheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecc-hH
Confidence            33456788999999988754  2333344556888888886542110                      0   0011 12


Q ss_pred             cccceEEEEecCCccEEE---EECCceeEEEEeeeeeee--eccCCcccceeeeeeccccccchhhccccccCCCceEEE
Q 014317          208 IQLKYLEIQSCYLMEEIE---ISAPSLLSFRYYGQAIKI--NIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLE  282 (427)
Q Consensus       208 ~~L~~L~l~~c~~l~~~~---i~~p~L~~L~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~  282 (427)
                      ..|..|++++.. +..+.   --+|.++.|.++.+.+..  .+..+++|+.++++.+...    .+.++-..+.|++.|.
T Consensus       284 q~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls----~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  284 QELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLA----ECVGWHLKLGNIKTLK  358 (490)
T ss_pred             hhhhhccccccc-hhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhH----hhhhhHhhhcCEeeee
Confidence            456667776543 33222   226899988887664332  3566788888888876632    2334446788999999


Q ss_pred             EeccceeecccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEE
Q 014317          283 LDSCNEVYMQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVE  362 (427)
Q Consensus       283 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~  362 (427)
                      |.. +.++..+++..+.+|..|+++.+.-  .++.. ..-+.+.|.|++|.+.++......+- +..+-+....+-.++.
T Consensus       359 La~-N~iE~LSGL~KLYSLvnLDl~~N~I--e~lde-V~~IG~LPCLE~l~L~~NPl~~~vdY-RTKVLa~FGERaSE~~  433 (490)
T KOG1259|consen  359 LAQ-NKIETLSGLRKLYSLVNLDLSSNQI--EELDE-VNHIGNLPCLETLRLTGNPLAGSVDY-RTKVLARFGERASEIS  433 (490)
T ss_pred             hhh-hhHhhhhhhHhhhhheeccccccch--hhHHH-hcccccccHHHHHhhcCCCccccchH-HHHHHHHHhhhhhhee
Confidence            987 6666667778888899988854321  12222 33457899999999976532221000 0000011223445677


Q ss_pred             EeceecCccHHHHHHHH
Q 014317          363 LHGFLGRQFDVELAQYL  379 (427)
Q Consensus       363 i~~f~g~~~e~~~~~~l  379 (427)
                      ++|-.+.+.|+.-+.-+
T Consensus       434 LD~~~~~~~ELDTV~Vl  450 (490)
T KOG1259|consen  434 LDNEPGNQQELDTVLVL  450 (490)
T ss_pred             cCCCCcchhhhhHHHHH
Confidence            77777777777765544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.81  E-value=0.00034  Score=70.12  Aligned_cols=40  Identities=20%  Similarity=0.403  Sum_probs=28.8

Q ss_pred             CCcCCCCChHHHHHHHhcCChHHHHHHhhhhhhhhhhccc
Q 014317           13 EDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTF   52 (427)
Q Consensus        13 ~D~is~LPd~iL~~Ils~L~~~d~~r~s~vskrW~~lw~~   52 (427)
                      .+.....|++....+....+..+......++++|......
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (482)
T KOG1947|consen   42 LRFTLLLPDELLADLLLKLVVLDRESVSLVTRLWLTLLGS   81 (482)
T ss_pred             eeeeeccccchhhhcccccccccccccchhhhhhhhhhhh
Confidence            3556667778888888888777777777778888766443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.79  E-value=0.00011  Score=73.58  Aligned_cols=80  Identities=18%  Similarity=0.350  Sum_probs=56.6

Q ss_pred             CCCCCCcEEEEeeEE-eChhhHHHHHhcCCccceeeeccCCCceeE---EEecCccccceEEEEecCCccE-----EEEE
Q 014317          157 SGIKFLRCLHFKTVN-VNGKDIELFIQNCPLLDRLCVDHSKTLVRL---RVIGSSIQLKYLEIQSCYLMEE-----IEIS  227 (427)
Q Consensus       157 ~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l---~i~~~~~~L~~L~l~~c~~l~~-----~~i~  227 (427)
                      ..+++|+.|++..+. +++..+..+...||.||.|.+.+|..+.+.   .+...|+.|++|.+++|..+..     +...
T Consensus       240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~  319 (482)
T KOG1947|consen  240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN  319 (482)
T ss_pred             hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh
Confidence            456888999998887 788888888888999999998888864332   3334668889998888876421     2223


Q ss_pred             CCceeEEEE
Q 014317          228 APSLLSFRY  236 (427)
Q Consensus       228 ~p~L~~L~~  236 (427)
                      +|+|+.|.+
T Consensus       320 c~~l~~l~~  328 (482)
T KOG1947|consen  320 CPNLRELKL  328 (482)
T ss_pred             Ccchhhhhh
Confidence            566555543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=96.72  E-value=0.0014  Score=55.83  Aligned_cols=134  Identities=22%  Similarity=0.253  Sum_probs=47.2

Q ss_pred             CCcccceeeeeeccccccchhhccccccCCCceEEEEeccceeecccccCCCCceeEEEEEEEccCCCChHHHH-HHHHh
Q 014317          247 NVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLRVTTPNRESLLGLT-CIMKA  325 (427)
Q Consensus       247 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~ll~~  325 (427)
                      +...++++++.+.....    +..+-..+.+++.|+++. +.+..-++++.+++|++|.++.+.-.     .+. .+..+
T Consensus        17 n~~~~~~L~L~~n~I~~----Ie~L~~~l~~L~~L~Ls~-N~I~~l~~l~~L~~L~~L~L~~N~I~-----~i~~~l~~~   86 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIST----IENLGATLDKLEVLDLSN-NQITKLEGLPGLPRLKTLDLSNNRIS-----SISEGLDKN   86 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TT-S--S--TT----TT--EEE--SS--------S-CHHHHHH
T ss_pred             ccccccccccccccccc----ccchhhhhcCCCEEECCC-CCCccccCccChhhhhhcccCCCCCC-----ccccchHHh
Confidence            34456666666655322    233334678889999997 66665556778888999988544222     121 24457


Q ss_pred             CCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEeceecCccHHHHHHHHHhccccccceEEEeec
Q 014317          326 CPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIEPSR  395 (427)
Q Consensus       326 ~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i~~~~  395 (427)
                      +|+|++|.+..+.-.. -++... +.  .+.+|+.+.+.|---. ..-.+=.+++...|+|+.+.-..-.
T Consensus        87 lp~L~~L~L~~N~I~~-l~~l~~-L~--~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~~V~  151 (175)
T PF14580_consen   87 LPNLQELYLSNNKISD-LNELEP-LS--SLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQDVT  151 (175)
T ss_dssp             -TT--EEE-TTS---S-CCCCGG-GG--G-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTEETT
T ss_pred             CCcCCEEECcCCcCCC-hHHhHH-HH--cCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCEEcc
Confidence            8999999996543211 112211 11  3567888888753211 1234556888888999988754433

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=96.72  E-value=2.9e-05  Score=76.36  Aligned_cols=122  Identities=17%  Similarity=0.172  Sum_probs=69.6

Q ss_pred             cccceEEEEecCCccEEEEEC---CceeEEEEeeee---eeeeccCCcccceeeeeeccccccchhhccccccCCCceEE
Q 014317          208 IQLKYLEIQSCYLMEEIEISA---PSLLSFRYYGQA---IKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTL  281 (427)
Q Consensus       208 ~~L~~L~l~~c~~l~~~~i~~---p~L~~L~~~~~~---~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L  281 (427)
                      ++|++|.+++.. +.++....   .+|++|.++.+.   .|-.+..++.|+++.+..+....  ..+..=++.+.+|+.+
T Consensus       245 ~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~F--eGiPSGIGKL~~Levf  321 (1255)
T KOG0444|consen  245 RNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTF--EGIPSGIGKLIQLEVF  321 (1255)
T ss_pred             hhhheeccCcCc-eeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccc--cCCccchhhhhhhHHH
Confidence            455556555543 33332221   455555555442   22334456667777666544210  1122223456677777


Q ss_pred             EEeccceee-cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEecc
Q 014317          282 ELDSCNEVY-MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLND  338 (427)
Q Consensus       282 ~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~  338 (427)
                      ...+ +.++ +|++++.|..|+.|.|+-+     .+..++.-+.-.|.|+.|++.-+.
T Consensus       322 ~aan-N~LElVPEglcRC~kL~kL~L~~N-----rLiTLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  322 HAAN-NKLELVPEGLCRCVKLQKLKLDHN-----RLITLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             Hhhc-cccccCchhhhhhHHHHHhccccc-----ceeechhhhhhcCCcceeeccCCc
Confidence            7776 6666 8888888999999988433     222344555567889999987543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.71  E-value=0.0021  Score=67.19  Aligned_cols=127  Identities=13%  Similarity=0.049  Sum_probs=56.1

Q ss_pred             CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEEECCceeEEEEeee
Q 014317          160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYYGQ  239 (427)
Q Consensus       160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~~~~~  239 (427)
                      ++|++|+|.++.+..-  .   ...+.|+.|++.++....   +.....+|+.|.++++. +..+....|+|+.|+++++
T Consensus       242 ~~Lk~LdLs~N~LtsL--P---~lp~sL~~L~Ls~N~L~~---Lp~lp~~L~~L~Ls~N~-Lt~LP~~p~~L~~LdLS~N  312 (788)
T PRK15387        242 PELRTLEVSGNQLTSL--P---VLPPGLLELSIFSNPLTH---LPALPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSDN  312 (788)
T ss_pred             CCCcEEEecCCccCcc--c---CcccccceeeccCCchhh---hhhchhhcCEEECcCCc-cccccccccccceeECCCC
Confidence            5566666665544321  0   012455555555443111   11111355566665543 4444334466777776655


Q ss_pred             eeeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeEEEE
Q 014317          240 AIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRL  306 (427)
Q Consensus       240 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l  306 (427)
                      .+...-...+.|+.+++..+..       ..+.....+|+.|+|++ +.+. +|..   ..+|+.|.+
T Consensus       313 ~L~~Lp~lp~~L~~L~Ls~N~L-------~~LP~lp~~Lq~LdLS~-N~Ls~LP~l---p~~L~~L~L  369 (788)
T PRK15387        313 QLASLPALPSELCKLWAYNNQL-------TSLPTLPSGLQELSVSD-NQLASLPTL---PSELYKLWA  369 (788)
T ss_pred             ccccCCCCcccccccccccCcc-------ccccccccccceEecCC-CccCCCCCC---Ccccceehh
Confidence            3321111112345554444331       11222224677777776 4443 3321   235555554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=96.71  E-value=0.00096  Score=69.82  Aligned_cols=155  Identities=14%  Similarity=0.130  Sum_probs=73.3

Q ss_pred             CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEec-CccccceEEEEecCCccEEEEE-CCceeEEEEe
Q 014317          160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIG-SSIQLKYLEIQSCYLMEEIEIS-APSLLSFRYY  237 (427)
Q Consensus       160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~-~~~~L~~L~l~~c~~l~~~~i~-~p~L~~L~~~  237 (427)
                      ++|++|+|.++.+..  +..-+  .+.|+.|.|.+|....   ++. -..+|+.|.++++. +..+.-. .++|+.|+++
T Consensus       220 ~nL~~L~Ls~N~Lts--LP~~l--~~~L~~L~Ls~N~L~~---LP~~l~s~L~~L~Ls~N~-L~~LP~~l~~sL~~L~Ls  291 (754)
T PRK15370        220 GNIKTLYANSNQLTS--IPATL--PDTIQEMELSINRITE---LPERLPSALQSLDLFHNK-ISCLPENLPEELRYLSVY  291 (754)
T ss_pred             cCCCEEECCCCcccc--CChhh--hccccEEECcCCccCc---CChhHhCCCCEEECcCCc-cCccccccCCCCcEEECC
Confidence            467777776665432  11101  2356777776664321   111 01356777776443 4433322 2467777776


Q ss_pred             eeeeeeeccCC-cccceeeeeeccccccchhhcccc-ccCCCceEEEEeccceeecccccCCCCceeEEEEEEEccCCCC
Q 014317          238 GQAIKINIENV-PQLVDVSIRGSHTFRVTYFVGPII-SCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLRVTTPNRES  315 (427)
Q Consensus       238 ~~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~-~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  315 (427)
                      ++.+......+ +.|+.+++..+....       +. ...++|+.|.+++|.-..++..++  ++|+.|+++.+.-.  .
T Consensus       292 ~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~-------LP~~l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~--~  360 (754)
T PRK15370        292 DNSIRTLPAHLPSGITHLNVQSNSLTA-------LPETLPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQIT--V  360 (754)
T ss_pred             CCccccCcccchhhHHHHHhcCCcccc-------CCccccccceeccccCCccccCChhhc--CcccEEECCCCCCC--c
Confidence            65332111111 235555555443211       11 123577777777632222443332  57777777543211  1


Q ss_pred             hHHHHHHHHhCCCccEEEEEecc
Q 014317          316 LLGLTCIMKACPFLQKLILQLND  338 (427)
Q Consensus       316 ~~~l~~ll~~~p~L~~L~i~~~~  338 (427)
                         ++.-  -.++|+.|+|+.+.
T Consensus       361 ---LP~~--lp~~L~~LdLs~N~  378 (754)
T PRK15370        361 ---LPET--LPPTITTLDVSRNA  378 (754)
T ss_pred             ---CChh--hcCCcCEEECCCCc
Confidence               1111  12578888877553

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.51  E-value=0.0037  Score=65.40  Aligned_cols=13  Identities=15%  Similarity=-0.133  Sum_probs=7.2

Q ss_pred             CCCcEEEEeeEEe
Q 014317          160 KFLRCLHFKTVNV  172 (427)
Q Consensus       160 ~~L~~L~L~~~~~  172 (427)
                      ++|+.|+|.++.+
T Consensus       262 ~sL~~L~Ls~N~L  274 (788)
T PRK15387        262 PGLLELSIFSNPL  274 (788)
T ss_pred             cccceeeccCCch
Confidence            4566666655443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=96.31  E-value=3.9e-05  Score=75.43  Aligned_cols=229  Identities=16%  Similarity=0.159  Sum_probs=100.4

Q ss_pred             CCCCCCCCCCCcEEEEeeEEeCh--hhHHHHHhcCCccceeeeccCCCcee-EEEecCccccceEEEEecCCccEEEE--
Q 014317          152 SGRGLSGIKFLRCLHFKTVNVNG--KDIELFIQNCPLLDRLCVDHSKTLVR-LRVIGSSIQLKYLEIQSCYLMEEIEI--  226 (427)
Q Consensus       152 lp~~~~~~~~L~~L~L~~~~~~~--~~l~~ll~~cp~Le~L~l~~c~~~~~-l~i~~~~~~L~~L~l~~c~~l~~~~i--  226 (427)
                      +|+.+..+..|+.|+|++..+..  ..    +....++-.|+|++.....- -.+-..+..|-.|+++..+ ++.+.-  
T Consensus        95 iP~diF~l~dLt~lDLShNqL~EvP~~----LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~  169 (1255)
T KOG0444|consen   95 IPTDIFRLKDLTILDLSHNQLREVPTN----LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQI  169 (1255)
T ss_pred             CCchhcccccceeeecchhhhhhcchh----hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHHH
Confidence            45556667788888888776542  22    22345566677765532110 0001112344455555443 222211  


Q ss_pred             -ECCceeEEEEeeeee-eeeccCCcccceeeeeecccc-ccchhhccccccCCCceEEEEeccceee-cccccCCCCcee
Q 014317          227 -SAPSLLSFRYYGQAI-KINIENVPQLVDVSIRGSHTF-RVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLI  302 (427)
Q Consensus       227 -~~p~L~~L~~~~~~~-~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~  302 (427)
                       .-.+|++|.++++.. .+.+..+|+++.+.+--.... ....++..-+..+.||..++++. +++. +|+.+..+++|+
T Consensus       170 RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~Lr  248 (1255)
T KOG0444|consen  170 RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLR  248 (1255)
T ss_pred             HHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhh
Confidence             113455555665533 233344444444332211110 01122333334455555555553 4433 444444455555


Q ss_pred             EEEEEEEcc------------------CCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEe
Q 014317          303 DLRLRVTTP------------------NRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELH  364 (427)
Q Consensus       303 ~L~l~~~~~------------------~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~  364 (427)
                      .|+|+.+.-                  +...+..+++-+-..|+|++|....+. .+++|.     |+ ..-.|..+  .
T Consensus       249 rLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~Nk-L~FeGi-----PS-GIGKL~~L--e  319 (1255)
T KOG0444|consen  249 RLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNK-LTFEGI-----PS-GIGKLIQL--E  319 (1255)
T ss_pred             eeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCc-ccccCC-----cc-chhhhhhh--H
Confidence            555432110                  000233345555556666666664332 122222     10 11111111  1


Q ss_pred             ceecCccHHHHHHHHHhccccccceEEEeec
Q 014317          365 GFLGRQFDVELAQYLFQNATMLEKLIIEPSR  395 (427)
Q Consensus       365 ~f~g~~~e~~~~~~ll~~a~~L~~l~i~~~~  395 (427)
                      .|....+.++++.-=+-.|+.|+++.+....
T Consensus       320 vf~aanN~LElVPEglcRC~kL~kL~L~~Nr  350 (1255)
T KOG0444|consen  320 VFHAANNKLELVPEGLCRCVKLQKLKLDHNR  350 (1255)
T ss_pred             HHHhhccccccCchhhhhhHHHHHhcccccc
Confidence            2333344455555666667777777665444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.29  E-value=0.001  Score=68.88  Aligned_cols=58  Identities=19%  Similarity=0.209  Sum_probs=43.1

Q ss_pred             CCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEE
Q 014317          158 GIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQ  216 (427)
Q Consensus       158 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~  216 (427)
                      -||+|++|.+.+..+..++|..+..++|+|..|+|+++.-.. +.-.+.+++|+.|.+.
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l~GIS~LknLq~L~mr  203 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-LSGISRLKNLQVLSMR  203 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-cHHHhccccHHHHhcc
Confidence            589999999999999988899999999999999998874322 2222233555555443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=96.12  E-value=0.0045  Score=64.89  Aligned_cols=155  Identities=16%  Similarity=0.151  Sum_probs=91.9

Q ss_pred             CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEEE-CCceeEEEEee
Q 014317          160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEIS-APSLLSFRYYG  238 (427)
Q Consensus       160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~-~p~L~~L~~~~  238 (427)
                      ++|+.|+|.++.+..  +..-+  +++|+.|.+.++.. ..+... ..++|+.|.+++|. +..+... ..+|+.|++++
T Consensus       199 ~~L~~L~Ls~N~Lts--LP~~l--~~nL~~L~Ls~N~L-tsLP~~-l~~~L~~L~Ls~N~-L~~LP~~l~s~L~~L~Ls~  271 (754)
T PRK15370        199 EQITTLILDNNELKS--LPENL--QGNIKTLYANSNQL-TSIPAT-LPDTIQEMELSINR-ITELPERLPSALQSLDLFH  271 (754)
T ss_pred             cCCcEEEecCCCCCc--CChhh--ccCCCEEECCCCcc-ccCChh-hhccccEEECcCCc-cCcCChhHhCCCCEEECcC
Confidence            579999999887653  11111  36899999998752 222111 11479999998876 4444322 24789998887


Q ss_pred             eeeeeeccC-Ccccceeeeeeccccccchhhcccccc-CCCceEEEEeccceee-cccccCCCCceeEEEEEEEccCCCC
Q 014317          239 QAIKINIEN-VPQLVDVSIRGSHTFRVTYFVGPIISC-FPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLRVTTPNRES  315 (427)
Q Consensus       239 ~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~-~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~  315 (427)
                      +.+...... .+.|+.+.++.+....       +... .++++.|.+++ +.+. ++..+  .++|+.|.++.+.-.  .
T Consensus       272 N~L~~LP~~l~~sL~~L~Ls~N~Lt~-------LP~~lp~sL~~L~Ls~-N~Lt~LP~~l--~~sL~~L~Ls~N~Lt--~  339 (754)
T PRK15370        272 NKISCLPENLPEELRYLSVYDNSIRT-------LPAHLPSGITHLNVQS-NSLTALPETL--PPGLKTLEAGENALT--S  339 (754)
T ss_pred             CccCccccccCCCCcEEECCCCcccc-------CcccchhhHHHHHhcC-CccccCCccc--cccceeccccCCccc--c
Confidence            644321112 2468888887765321       2221 24688888887 4443 44332  368888887543211  1


Q ss_pred             hHHHHHHHHhCCCccEEEEEecc
Q 014317          316 LLGLTCIMKACPFLQKLILQLND  338 (427)
Q Consensus       316 ~~~l~~ll~~~p~L~~L~i~~~~  338 (427)
                         ++.-  -+++|+.|+++.+.
T Consensus       340 ---LP~~--l~~sL~~L~Ls~N~  357 (754)
T PRK15370        340 ---LPAS--LPPELQVLDVSKNQ  357 (754)
T ss_pred             ---CChh--hcCcccEEECCCCC
Confidence               1211  14799999998764

>PRK15386 type III secretion protein GogB; Provisional

Probab=95.63  E-value=0.016  Score=55.89  Aligned_cols=30  Identities=33%  Similarity=0.558  Sum_probs=17.2

Q ss_pred             CCceEEEEeccceeecccccCCCCceeEEEEE
Q 014317          276 PQLKTLELDSCNEVYMQFSLFELPKLIDLRLR  307 (427)
Q Consensus       276 ~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  307 (427)
                      ++|+.|.+++|.....+..++  .+|++|.++
T Consensus       156 sSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls  185 (426)
T PRK15386        156 PSLKTLSLTGCSNIILPEKLP--ESLQSITLH  185 (426)
T ss_pred             CcccEEEecCCCcccCccccc--ccCcEEEec
Confidence            467777776655444444333  466666664

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=95.15  E-value=0.026  Score=51.20  Aligned_cols=55  Identities=25%  Similarity=0.379  Sum_probs=32.1

Q ss_pred             ccceeeeeeccccccchhhccccccCCCceEEEEeccceeecccccCCCCceeEEEEEEE
Q 014317          250 QLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLRVT  309 (427)
Q Consensus       250 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~  309 (427)
                      .|++++++.+....    +..-....|.++.|.++. +.+.....+..+++|++|+|+.+
T Consensus       285 ~LtelDLS~N~I~~----iDESvKL~Pkir~L~lS~-N~i~~v~nLa~L~~L~~LDLS~N  339 (490)
T KOG1259|consen  285 ELTELDLSGNLITQ----IDESVKLAPKLRRLILSQ-NRIRTVQNLAELPQLQLLDLSGN  339 (490)
T ss_pred             hhhhccccccchhh----hhhhhhhccceeEEeccc-cceeeehhhhhcccceEeecccc
Confidence            45666665554221    223345677777777776 55553344667777777777543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=95.10  E-value=0.013  Score=53.78  Aligned_cols=38  Identities=29%  Similarity=0.550  Sum_probs=35.9

Q ss_pred             CCCcCCCCC----hHHHHHHHhcCChHHHHHHhhhhhhhhhh
Q 014317           12 SEDLINRLP----DDILVNIISHLTLKEAARTSVLSNRWRNL   49 (427)
Q Consensus        12 ~~D~is~LP----d~iL~~Ils~L~~~d~~r~s~vskrW~~l   49 (427)
                      ..|.|+.||    |+|...||++|+..+...+-.|||+|+++
T Consensus        71 qrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~  112 (499)
T KOG0281|consen   71 QRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV  112 (499)
T ss_pred             HHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence            469999999    99999999999999999999999999875

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=95.03  E-value=0.02  Score=54.45  Aligned_cols=37  Identities=24%  Similarity=0.350  Sum_probs=33.6

Q ss_pred             cCCCCChHHHHHHHhcCC-hHHHHHHhhhhhhhhhhcc
Q 014317           15 LINRLPDDILVNIISHLT-LKEAARTSVLSNRWRNLWT   51 (427)
Q Consensus        15 ~is~LPd~iL~~Ils~L~-~~d~~r~s~vskrW~~lw~   51 (427)
                      .|++||+|+|..|..+|+ .-|.+|.+.||+.||..-.
T Consensus         3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~   40 (373)
T PLN03215          3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS   40 (373)
T ss_pred             ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence            488999999999999997 6799999999999998644

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=94.88  E-value=0.039  Score=37.83  Aligned_cols=34  Identities=35%  Similarity=0.482  Sum_probs=17.1

Q ss_pred             cccCCCceEEEEeccceee--cccccCCCCceeEEEE
Q 014317          272 ISCFPQLKTLELDSCNEVY--MQFSLFELPKLIDLRL  306 (427)
Q Consensus       272 ~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~~L~l  306 (427)
                      +..+++|+.|++++ +.+.  .+..+..+++|++|.+
T Consensus        21 f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l   56 (61)
T PF13855_consen   21 FSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDL   56 (61)
T ss_dssp             TTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEE
T ss_pred             HcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeC
Confidence            34556666666664 3333  2233455555555554

...

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=94.42  E-value=0.001  Score=55.23  Aligned_cols=56  Identities=29%  Similarity=0.267  Sum_probs=33.2

Q ss_pred             CceEEEEeccceee-cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEecc
Q 014317          277 QLKTLELDSCNEVY-MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLND  338 (427)
Q Consensus       277 ~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~  338 (427)
                      .++-|.++. +..+ +|.....+.+|+.|.+.-+     +...++.-++....|++|.|++++
T Consensus       128 tlralyl~d-ndfe~lp~dvg~lt~lqil~lrdn-----dll~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  128 TLRALYLGD-NDFEILPPDVGKLTNLQILSLRDN-----DLLSLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             HHHHHHhcC-CCcccCChhhhhhcceeEEeeccC-----chhhCcHHHHHHHHHHHHhcccce
Confidence            344455554 4444 5555666667777666322     445555556666777888887764

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=94.31  E-value=0.041  Score=37.77  Aligned_cols=54  Identities=22%  Similarity=0.378  Sum_probs=33.4

Q ss_pred             CceeEEEEeeeeee----eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEec
Q 014317          229 PSLLSFRYYGQAIK----INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDS  285 (427)
Q Consensus       229 p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~  285 (427)
                      |+|++|.+.++...    ..+.+++.|+.++++.+..   ...-...+..+++|+.|.+++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l---~~i~~~~f~~l~~L~~L~l~~   58 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNL---TSIPPDAFSNLPNLRYLDLSN   58 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSE---SEEETTTTTTSTTESEEEETS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCcc---CccCHHHHcCCCCCCEEeCcC
Confidence            44555555544221    2356677788888876663   223334567888999999887

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=93.95  E-value=0.0024  Score=66.05  Aligned_cols=80  Identities=24%  Similarity=0.251  Sum_probs=46.9

Q ss_pred             CcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-ccc-ccCCCCceeEEEEEEEccCCCChHHHHHHHHh
Q 014317          248 VPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQF-SLFELPKLIDLRLRVTTPNRESLLGLTCIMKA  325 (427)
Q Consensus       248 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~  325 (427)
                      .+.|+.+++..+.   +++.....+.++++|+.|+|++ +.+. .|. .+..+..|++|.|+.+     .+..+..=+..
T Consensus       358 ~~~Lq~LylanN~---Ltd~c~p~l~~~~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSGN-----kL~~Lp~tva~  428 (1081)
T KOG0618|consen  358 HAALQELYLANNH---LTDSCFPVLVNFKHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSGN-----KLTTLPDTVAN  428 (1081)
T ss_pred             hHHHHHHHHhcCc---ccccchhhhccccceeeeeecc-cccccCCHHHHhchHHhHHHhcccc-----hhhhhhHHHHh
Confidence            3445555555544   4455566678889999999997 6555 443 3466677777777544     33333333344


Q ss_pred             CCCccEEEEEe
Q 014317          326 CPFLQKLILQL  336 (427)
Q Consensus       326 ~p~L~~L~i~~  336 (427)
                      |+.|++|..+.
T Consensus       429 ~~~L~tL~ahs  439 (1081)
T KOG0618|consen  429 LGRLHTLRAHS  439 (1081)
T ss_pred             hhhhHHHhhcC
Confidence            55555554443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=93.67  E-value=0.064  Score=48.17  Aligned_cols=226  Identities=15%  Similarity=0.072  Sum_probs=119.8

Q ss_pred             eeEEEEEEecCCCCCccHHHHHHHHhcC--CceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEeeEEe
Q 014317           95 INEFKVRFDLCDFHQSDITNWVYTVLGK--RVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNV  172 (427)
Q Consensus        95 l~~l~l~~~~~~~~~~~~~~wl~~~~~~--~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~  172 (427)
                      +..+.++...   ...-...|+....+.  +++...++-...+.. .-.+|.++-  + +.+....||.|+..+|+...|
T Consensus        32 ~~evdLSGNt---igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~-kde~~~~L~--~-Ll~aLlkcp~l~~v~LSDNAf  104 (388)
T COG5238          32 LVEVDLSGNT---IGTEAMEELCNVIANVRNLRVVNFSDAFTGRD-KDELYSNLV--M-LLKALLKCPRLQKVDLSDNAF  104 (388)
T ss_pred             eeEEeccCCc---ccHHHHHHHHHHHhhhcceeEeehhhhhhccc-HHHHHHHHH--H-HHHHHhcCCcceeeecccccc
Confidence            5666665432   223566788776543  344444322111110 012222210  0 112346789999999998887


Q ss_pred             Ch---hhHHHHHhcCCccceeeeccCCCc--eeEEEecCccccceEEEEecCCccEEEEECCceeEEEEeeeeee-----
Q 014317          173 NG---KDIELFIQNCPLLDRLCVDHSKTL--VRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYYGQAIK-----  242 (427)
Q Consensus       173 ~~---~~l~~ll~~cp~Le~L~l~~c~~~--~~l~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~~~~~~~~-----  242 (427)
                      +.   ..+..++++...|+.|.+.+|-.-  ..-+|.   ..|.+|....      =.-+.|.|+.+.+..+...     
T Consensus       105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig---kal~~la~nK------Kaa~kp~Le~vicgrNRlengs~~  175 (388)
T COG5238         105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG---KALFHLAYNK------KAADKPKLEVVICGRNRLENGSKE  175 (388)
T ss_pred             CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHH---HHHHHHHHHh------hhccCCCceEEEeccchhccCcHH
Confidence            64   357778888888999998887421  111222   1233332211      0124577777765433110     


Q ss_pred             ---eeccCCcccceeeeeeccccc--cchhhccccccCCCceEEEEeccceee------cccccCCCCceeEEEEEEEcc
Q 014317          243 ---INIENVPQLVDVSIRGSHTFR--VTYFVGPIISCFPQLKTLELDSCNEVY------MQFSLFELPKLIDLRLRVTTP  311 (427)
Q Consensus       243 ---~~~~~~~~L~~l~l~~~~~~~--~~~~~~~~~~~~~~l~~L~l~~~~~~~------~~~~~~~~~~L~~L~l~~~~~  311 (427)
                         ..+.+-..|..+.+..+...-  +.....-=+..+.+|+.|+|.. +...      +...++.+++|+.|.+.-+.-
T Consensus       176 ~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqD-Ntft~~gS~~La~al~~W~~lrEL~lnDCll  254 (388)
T COG5238         176 LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQD-NTFTLEGSRYLADALCEWNLLRELRLNDCLL  254 (388)
T ss_pred             HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccc-cchhhhhHHHHHHHhcccchhhhccccchhh
Confidence               112223457777777666432  1111111125778999999987 5443      344568888899998854444


Q ss_pred             CCCChHHHHHHHH--hCCCccEEEEEec
Q 014317          312 NRESLLGLTCIMK--ACPFLQKLILQLN  337 (427)
Q Consensus       312 ~~~~~~~l~~ll~--~~p~L~~L~i~~~  337 (427)
                      +..+..++..-+.  ..|+|..|-..++
T Consensus       255 s~~G~~~v~~~f~e~~~p~l~~L~~~Yn  282 (388)
T COG5238         255 SNEGVKSVLRRFNEKFVPNLMPLPGDYN  282 (388)
T ss_pred             ccccHHHHHHHhhhhcCCCccccccchh
Confidence            4433333333222  3688888877665

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=93.28  E-value=0.063  Score=48.97  Aligned_cols=40  Identities=23%  Similarity=0.349  Sum_probs=33.9

Q ss_pred             ccCCCcCCCCChHHHHHHHhc-----CChHHHHHHhhhhhhhhhh
Q 014317           10 EISEDLINRLPDDILVNIISH-----LTLKEAARTSVLSNRWRNL   49 (427)
Q Consensus        10 ~~~~D~is~LPd~iL~~Ils~-----L~~~d~~r~s~vskrW~~l   49 (427)
                      ++..+.|+.||||||..||..     |+.++..++|.|||.|+..
T Consensus       101 qp~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~  145 (366)
T KOG2997|consen  101 QPELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC  145 (366)
T ss_pred             chhhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH
Confidence            455667899999999999865     4679999999999999865

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=93.05  E-value=0.019  Score=61.38  Aligned_cols=62  Identities=24%  Similarity=0.295  Sum_probs=31.8

Q ss_pred             CCCCCcEEEEeeEEe-ChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecC
Q 014317          158 GIKFLRCLHFKTVNV-NGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCY  219 (427)
Q Consensus       158 ~~~~L~~L~L~~~~~-~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~  219 (427)
                      .+|.|++|-+..... -...-...+...|.|..|++.+|.....+ ...+.+-.|+.|.++++.
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~  606 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG  606 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC
Confidence            455677777776542 01111122455777777777776554422 111223456666665544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=93.03  E-value=0.051  Score=48.75  Aligned_cols=211  Identities=16%  Similarity=0.136  Sum_probs=114.3

Q ss_pred             ccHHHHHHHHh-cCCceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEeeEEeC---hh------hHHH
Q 014317          110 SDITNWVYTVL-GKRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVN---GK------DIEL  179 (427)
Q Consensus       110 ~~~~~wl~~~~-~~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~---~~------~l~~  179 (427)
                      .++...+..+. ...+.+++++..+.++...-.+--          .+.+-.+|+.-+++....+   ++      .+-.
T Consensus        17 eDvk~v~eel~~~d~~~evdLSGNtigtEA~e~l~~----------~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~   86 (388)
T COG5238          17 EDVKGVVEELEMMDELVEVDLSGNTIGTEAMEELCN----------VIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLK   86 (388)
T ss_pred             chhhHHHHHHHhhcceeEEeccCCcccHHHHHHHHH----------HHhhhcceeEeehhhhhhcccHHHHHHHHHHHHH
Confidence            45666666553 467888888766443221111211          1234466777676665432   11      2334


Q ss_pred             HHhcCCccceeeeccCC-CceeE----EEecCccccceEEEEecCCccEEEEE--CCceeEEEEeeeeeeeeccCCcccc
Q 014317          180 FIQNCPLLDRLCVDHSK-TLVRL----RVIGSSIQLKYLEIQSCYLMEEIEIS--APSLLSFRYYGQAIKINIENVPQLV  252 (427)
Q Consensus       180 ll~~cp~Le~L~l~~c~-~~~~l----~i~~~~~~L~~L~l~~c~~l~~~~i~--~p~L~~L~~~~~~~~~~~~~~~~L~  252 (427)
                      .+..||.|+..+|++.- +....    .+.++...|++|.+++|. +..+.=.  ...|.+|.+.     -...+.|.|+
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~n-----KKaa~kp~Le  160 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYN-----KKAADKPKLE  160 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHH-----hhhccCCCce
Confidence            46679999999997653 22211    222344678888888776 3322100  1112222111     1235667777


Q ss_pred             eeeeeeccccc-cchhhccccccCCCceEEEEeccceee-------cccccCCCCceeEEEEEEEccCCCChHHHHHHHH
Q 014317          253 DVSIRGSHTFR-VTYFVGPIISCFPQLKTLELDSCNEVY-------MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMK  324 (427)
Q Consensus       253 ~l~l~~~~~~~-~~~~~~~~~~~~~~l~~L~l~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~  324 (427)
                      .+....+...+ ........+..-.+++.+.+.. +++.       ...++..+.+|+.|+|.-+......-..+...+.
T Consensus       161 ~vicgrNRlengs~~~~a~~l~sh~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~  239 (388)
T COG5238         161 VVICGRNRLENGSKELSAALLESHENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALC  239 (388)
T ss_pred             EEEeccchhccCcHHHHHHHHHhhcCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhc
Confidence            77666554322 1111222334446788888876 5554       2234567778888888665554444344556666


Q ss_pred             hCCCccEEEEEec
Q 014317          325 ACPFLQKLILQLN  337 (427)
Q Consensus       325 ~~p~L~~L~i~~~  337 (427)
                      ..|.|+.|.+..|
T Consensus       240 ~W~~lrEL~lnDC  252 (388)
T COG5238         240 EWNLLRELRLNDC  252 (388)
T ss_pred             ccchhhhccccch
Confidence            7778888888765

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=92.79  E-value=0.055  Score=34.39  Aligned_cols=35  Identities=20%  Similarity=0.280  Sum_probs=25.5

Q ss_pred             CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCC
Q 014317          160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSK  196 (427)
Q Consensus       160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~  196 (427)
                      ++|++|+|.++.+.+  +...++.||+|+.|++.++.
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence            478888888887764  44447889999999998875

...

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=92.74  E-value=0.0024  Score=52.99  Aligned_cols=87  Identities=23%  Similarity=0.244  Sum_probs=49.9

Q ss_pred             eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee---cccccCCCCceeEEEEEEEccCCCChHH
Q 014317          242 KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY---MQFSLFELPKLIDLRLRVTTPNRESLLG  318 (427)
Q Consensus       242 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~  318 (427)
                      +..+.++|.|+.+.++.+..   . ...+=++.+|.+|.|++.+ +++.   +|..+..+..|+.|.++-+     ++.-
T Consensus        72 p~~issl~klr~lnvgmnrl---~-~lprgfgs~p~levldlty-nnl~e~~lpgnff~m~tlralyl~dn-----dfe~  141 (264)
T KOG0617|consen   72 PTSISSLPKLRILNVGMNRL---N-ILPRGFGSFPALEVLDLTY-NNLNENSLPGNFFYMTTLRALYLGDN-----DFEI  141 (264)
T ss_pred             Chhhhhchhhhheecchhhh---h-cCccccCCCchhhhhhccc-cccccccCCcchhHHHHHHHHHhcCC-----Cccc
Confidence            34456667777766654431   1 1222247889999999997 6655   4544444444555555221     3333


Q ss_pred             HHHHHHhCCCccEEEEEecc
Q 014317          319 LTCIMKACPFLQKLILQLND  338 (427)
Q Consensus       319 l~~ll~~~p~L~~L~i~~~~  338 (427)
                      ++.=.....+||.|.+..++
T Consensus       142 lp~dvg~lt~lqil~lrdnd  161 (264)
T KOG0617|consen  142 LPPDVGKLTNLQILSLRDND  161 (264)
T ss_pred             CChhhhhhcceeEEeeccCc
Confidence            34445667788888776443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.25  E-value=0.022  Score=51.64  Aligned_cols=102  Identities=12%  Similarity=0.213  Sum_probs=67.4

Q ss_pred             CCCcEEEEeeEEeCh-hhHHHHHhcCCccceeeeccCCCceeE---EEecCccccceEEEEecCC---ccEEEEECCcee
Q 014317          160 KFLRCLHFKTVNVNG-KDIELFIQNCPLLDRLCVDHSKTLVRL---RVIGSSIQLKYLEIQSCYL---MEEIEISAPSLL  232 (427)
Q Consensus       160 ~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~l~~c~~~~~l---~i~~~~~~L~~L~l~~c~~---l~~~~i~~p~L~  232 (427)
                      ..|.-|.+.++.+.. ++++.+-+.|..+++|+|......+.-   .|....|.|+.|.+++..-   ++....-..+|+
T Consensus        45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~  124 (418)
T KOG2982|consen   45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR  124 (418)
T ss_pred             cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence            456678888888876 578888889999999999876543321   2233568888888876542   223332335888


Q ss_pred             EEEEeeeeeee-----eccCCcccceeeeeeccc
Q 014317          233 SFRYYGQAIKI-----NIENVPQLVDVSIRGSHT  261 (427)
Q Consensus       233 ~L~~~~~~~~~-----~~~~~~~L~~l~l~~~~~  261 (427)
                      .|.+.|...++     .+.+.|.+++++++.+..
T Consensus       125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen  125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             EEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence            88888775443     234566677777666543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=90.41  E-value=0.57  Score=40.38  Aligned_cols=80  Identities=20%  Similarity=0.274  Sum_probs=48.8

Q ss_pred             CCCCCCCcEEEEeeEEeCh--hhHHHHHhcCCccceeeeccCC--CceeEEEecCccccceEEEEecCC-----ccEEEE
Q 014317          156 LSGIKFLRCLHFKTVNVNG--KDIELFIQNCPLLDRLCVDHSK--TLVRLRVIGSSIQLKYLEIQSCYL-----MEEIEI  226 (427)
Q Consensus       156 ~~~~~~L~~L~L~~~~~~~--~~l~~ll~~cp~Le~L~l~~c~--~~~~l~i~~~~~~L~~L~l~~c~~-----l~~~~i  226 (427)
                      +..++.|.+|.|.+.++..  ..+..   -.|+|..|.+.+..  .++++.=-++||+|+.|++-+.+-     .....+
T Consensus        60 lp~l~rL~tLll~nNrIt~I~p~L~~---~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl  136 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNNRITRIDPDLDT---FLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVL  136 (233)
T ss_pred             CCCccccceEEecCCcceeeccchhh---hccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEE
Confidence            4477899999999887653  34443   35888889887654  344444444668888887765431     112223


Q ss_pred             E-CCceeEEEEee
Q 014317          227 S-APSLLSFRYYG  238 (427)
Q Consensus       227 ~-~p~L~~L~~~~  238 (427)
                      . .|+|+.|++.+
T Consensus       137 ~klp~l~~LDF~k  149 (233)
T KOG1644|consen  137 YKLPSLRTLDFQK  149 (233)
T ss_pred             EecCcceEeehhh
Confidence            2 36666666543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.40  E-value=0.044  Score=46.98  Aligned_cols=40  Identities=13%  Similarity=0.169  Sum_probs=19.2

Q ss_pred             CCCCCcEEEEeeEE-eChhhHHHHHhcCCccceeeeccCCC
Q 014317          158 GIKFLRCLHFKTVN-VNGKDIELFIQNCPLLDRLCVDHSKT  197 (427)
Q Consensus       158 ~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c~~  197 (427)
                      +++.++.|.|.+|. +.+..++.+-...|+||.|.|..|..
T Consensus       123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~r  163 (221)
T KOG3864|consen  123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPR  163 (221)
T ss_pred             ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCe
Confidence            34444455555443 44444444444445555555555543

>PRK15386 type III secretion protein GogB; Provisional

Probab=90.11  E-value=0.5  Score=45.79  Aligned_cols=132  Identities=19%  Similarity=0.194  Sum_probs=66.8

Q ss_pred             HhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCCccEEEE-ECCceeEEEEeee-eeeeeccCCcccceeeee
Q 014317          181 IQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYLMEEIEI-SAPSLLSFRYYGQ-AIKINIENVPQLVDVSIR  257 (427)
Q Consensus       181 l~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~~~i-~~p~L~~L~~~~~-~~~~~~~~~~~L~~l~l~  257 (427)
                      +..|+.++.|.+.+| .+..+ .++   ++|++|.+++|..+..+.- -.++|++|.+.++ ....   -.+.|+.+.+.
T Consensus        48 ~~~~~~l~~L~Is~c-~L~sLP~LP---~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~s---LP~sLe~L~L~  120 (426)
T PRK15386         48 IEEARASGRLYIKDC-DIESLPVLP---NELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISG---LPESVRSLEIK  120 (426)
T ss_pred             HHHhcCCCEEEeCCC-CCcccCCCC---CCCcEEEccCCCCcccCCchhhhhhhheEccCcccccc---cccccceEEeC
Confidence            445677777777777 33322 222   3577777777776544431 1357777777665 2211   11346666654


Q ss_pred             eccccccchhhccccccCCCceEEEEeccceee---cccccCCCCceeEEEEEEEccCCCChHHHHHHHHh-CCCccEEE
Q 014317          258 GSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY---MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKA-CPFLQKLI  333 (427)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~-~p~L~~L~  333 (427)
                      ....       ..+....++|+.|.+.++....   .+..+|  ++|++|.+..  +....      +... -++|+.|+
T Consensus       121 ~n~~-------~~L~~LPssLk~L~I~~~n~~~~~~lp~~LP--sSLk~L~Is~--c~~i~------LP~~LP~SLk~L~  183 (426)
T PRK15386        121 GSAT-------DSIKNVPNGLTSLSINSYNPENQARIDNLIS--PSLKTLSLTG--CSNII------LPEKLPESLQSIT  183 (426)
T ss_pred             CCCC-------cccccCcchHhheeccccccccccccccccC--CcccEEEecC--CCccc------CcccccccCcEEE
Confidence            3221       1112233467777775422111   121111  5799998853  22111      0111 24788888


Q ss_pred             EEe
Q 014317          334 LQL  336 (427)
Q Consensus       334 i~~  336 (427)
                      +..
T Consensus       184 ls~  186 (426)
T PRK15386        184 LHI  186 (426)
T ss_pred             ecc
Confidence            754

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=89.88  E-value=0.037  Score=49.29  Aligned_cols=60  Identities=23%  Similarity=0.170  Sum_probs=28.1

Q ss_pred             hcCCccceeeeccCCCceeEEEecCccccceEEEEec--C---CccEEEEECCceeEEEEeeeeee
Q 014317          182 QNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSC--Y---LMEEIEISAPSLLSFRYYGQAIK  242 (427)
Q Consensus       182 ~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c--~---~l~~~~i~~p~L~~L~~~~~~~~  242 (427)
                      ...-.|+.|.+.+|.......++. +++||.|.++..  .   .+..+...+|+|+++.++++.+.
T Consensus        40 d~~~~le~ls~~n~gltt~~~~P~-Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTLTNFPK-LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             ccccchhhhhhhccceeecccCCC-cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            334444445554443322222221 256666666544  1   12223334577777777766443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.71  E-value=0.0011  Score=62.10  Aligned_cols=84  Identities=17%  Similarity=0.193  Sum_probs=54.8

Q ss_pred             eccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeEEEEEEEccCCCChHHHHHH
Q 014317          244 NIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLRVTTPNRESLLGLTCI  322 (427)
Q Consensus       244 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l  322 (427)
                      .+.+|..|.+++++.+..   ...-.+....++++..|++.. +.++ +|..+..+.+|..|+++.+     +..+++.-
T Consensus       223 ef~gcs~L~Elh~g~N~i---~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSNN-----~is~Lp~s  293 (565)
T KOG0472|consen  223 EFPGCSLLKELHVGENQI---EMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSNN-----DISSLPYS  293 (565)
T ss_pred             CCCccHHHHHHHhcccHH---HhhHHHHhcccccceeeeccc-cccccCchHHHHhhhhhhhcccCC-----ccccCCcc
Confidence            567778888888776652   222233346888999999987 6666 7888888888888888433     22333334


Q ss_pred             HHhCCCccEEEEEec
Q 014317          323 MKACPFLQKLILQLN  337 (427)
Q Consensus       323 l~~~p~L~~L~i~~~  337 (427)
                      +.+. .|+.|-+.++
T Consensus       294 Lgnl-hL~~L~leGN  307 (565)
T KOG0472|consen  294 LGNL-HLKFLALEGN  307 (565)
T ss_pred             cccc-eeeehhhcCC
Confidence            4454 6666666664

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=89.33  E-value=0.37  Score=51.81  Aligned_cols=136  Identities=23%  Similarity=0.190  Sum_probs=71.2

Q ss_pred             CcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhC
Q 014317          248 VPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKAC  326 (427)
Q Consensus       248 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~  326 (427)
                      +|.|+.+-+..... ++......|+..+|.|+.|+|++|.... +|+.+..+-+|++|+++..     ....++.-+++.
T Consensus       544 ~~~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-----~I~~LP~~l~~L  617 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-----GISHLPSGLGNL  617 (889)
T ss_pred             CCccceEEEeecch-hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-----CccccchHHHHH
Confidence            34455554444321 1122334456777888888888655544 7777777777777777433     223345556666


Q ss_pred             CCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEeceecCccHHHHHHHHHhccccccceEEEeecc
Q 014317          327 PFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIEPSRY  396 (427)
Q Consensus       327 p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i~~~~~  396 (427)
                      .+|.+|++.........    . .-.+...+|+++.+..-.-.. ....++-+ ++...|+.+.++.+..
T Consensus       618 k~L~~Lnl~~~~~l~~~----~-~i~~~L~~Lr~L~l~~s~~~~-~~~~l~el-~~Le~L~~ls~~~~s~  680 (889)
T KOG4658|consen  618 KKLIYLNLEVTGRLESI----P-GILLELQSLRVLRLPRSALSN-DKLLLKEL-ENLEHLENLSITISSV  680 (889)
T ss_pred             Hhhheeccccccccccc----c-chhhhcccccEEEeecccccc-chhhHHhh-hcccchhhheeecchh
Confidence            67777777654321100    0 112345677777766543111 11112222 5666666666655543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.87  E-value=0.05  Score=46.65  Aligned_cols=56  Identities=13%  Similarity=0.187  Sum_probs=38.7

Q ss_pred             eEEeChhhHHHHHhcCCccceeeeccCCCceeEEE---ecCccccceEEEEecCCccEEE
Q 014317          169 TVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRV---IGSSIQLKYLEIQSCYLMEEIE  225 (427)
Q Consensus       169 ~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i---~~~~~~L~~L~l~~c~~l~~~~  225 (427)
                      ++.+..+.++. +..++.++.|.+.+|..+++..+   ....++|+.|.+++|+.+.+-.
T Consensus       110 ds~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G  168 (221)
T KOG3864|consen  110 DSSIMYEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG  168 (221)
T ss_pred             CchHHHHHHHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH
Confidence            33344445555 66799999999999998775422   2234889999999888765543

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=88.75  E-value=0.21  Score=27.54  Aligned_cols=17  Identities=24%  Similarity=0.493  Sum_probs=13.7

Q ss_pred             CCccceeeeccCCCcee
Q 014317          184 CPLLDRLCVDHSKTLVR  200 (427)
Q Consensus       184 cp~Le~L~l~~c~~~~~  200 (427)
                      ||.|++|+|.+|..+++
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            78888999988887654

>PF13013 F-box-like_2: F-box-like domain

Probab=88.04  E-value=0.56  Score=36.31  Aligned_cols=39  Identities=21%  Similarity=0.272  Sum_probs=30.8

Q ss_pred             cCCCCChHHHHHHHhcCChHHHHHHhhhhh---hhhhh-cccC
Q 014317           15 LINRLPDDILVNIISHLTLKEAARTSVLSN---RWRNL-WTFT   53 (427)
Q Consensus        15 ~is~LPd~iL~~Ils~L~~~d~~r~s~vsk---rW~~l-w~~~   53 (427)
                      .+.+||+||++.|+.+-+..+...++..|+   .|++. |..+
T Consensus        21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~~r~~~~~~L   63 (109)
T PF13013_consen   21 TLLDLPWELLQLIFDYCNDPILLALSRTCRAYRSWRDHIWYLL   63 (109)
T ss_pred             chhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            588999999999999999999988887776   44444 4443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.82  E-value=0.034  Score=50.05  Aligned_cols=75  Identities=21%  Similarity=0.296  Sum_probs=39.4

Q ss_pred             cccceEEEEecCCccEEEE--ECCceeEEEEeeeeee--eeccCCcccceeeeeeccccccchhhccccccCCCceEEEE
Q 014317          208 IQLKYLEIQSCYLMEEIEI--SAPSLLSFRYYGQAIK--INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLEL  283 (427)
Q Consensus       208 ~~L~~L~l~~c~~l~~~~i--~~p~L~~L~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l  283 (427)
                      .+.+.|..++|. +.+|.|  ..|.|+.|.++-+.+.  -.+..|.+|+++++..+....++  -..++.++|+|+.|.|
T Consensus        19 ~~vkKLNcwg~~-L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sld--EL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   19 ENVKKLNCWGCG-LDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLD--ELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHhhhhcccCCC-ccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHH--HHHHHhcCchhhhHhh
Confidence            356778888887 665544  3577777766644321  12344555666665554432211  1223455555555555


Q ss_pred             ec
Q 014317          284 DS  285 (427)
Q Consensus       284 ~~  285 (427)
                      ..
T Consensus        96 ~E   97 (388)
T KOG2123|consen   96 DE   97 (388)
T ss_pred             cc
Confidence            43

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=87.69  E-value=0.2  Score=48.83  Aligned_cols=148  Identities=16%  Similarity=0.187  Sum_probs=81.9

Q ss_pred             CCCCCCCC-CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEEE--C
Q 014317          152 SGRGLSGI-KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEIS--A  228 (427)
Q Consensus       152 lp~~~~~~-~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~--~  228 (427)
                      +|+....+ ++|+.|++.+..+..-.  .-+..+|.|+.|.+.++...+........+.|+.|.+++.. +..+...  .
T Consensus       131 i~~~~~~~~~nL~~L~l~~N~i~~l~--~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~  207 (394)
T COG4886         131 IPPLIGLLKSNLKELDLSDNKIESLP--SPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIEL  207 (394)
T ss_pred             Cccccccchhhcccccccccchhhhh--hhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCc-cccCchhhhh
Confidence            34434444 37888888877664421  22567889999999888654432221123678888887765 4544432  3


Q ss_pred             Cc-eeEEEEeeee-e--eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeE
Q 014317          229 PS-LLSFRYYGQA-I--KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLID  303 (427)
Q Consensus       229 p~-L~~L~~~~~~-~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~  303 (427)
                      ++ |+++.+.+.. .  ...+.....+..+.+.....   . .+...+..+++++.|.++. ..+. +.. +....+++.
T Consensus       208 ~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~---~-~~~~~~~~l~~l~~L~~s~-n~i~~i~~-~~~~~~l~~  281 (394)
T COG4886         208 LSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL---E-DLPESIGNLSNLETLDLSN-NQISSISS-LGSLTNLRE  281 (394)
T ss_pred             hhhhhhhhhcCCcceecchhhhhcccccccccCCcee---e-eccchhccccccceecccc-cccccccc-ccccCccCE
Confidence            43 7777766552 1  22233344444444222221   0 1124456677777887776 4444 333 666677777


Q ss_pred             EEEEE
Q 014317          304 LRLRV  308 (427)
Q Consensus       304 L~l~~  308 (427)
                      |.++.
T Consensus       282 L~~s~  286 (394)
T COG4886         282 LDLSG  286 (394)
T ss_pred             EeccC
Confidence            77643

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=86.73  E-value=0.66  Score=44.11  Aligned_cols=93  Identities=19%  Similarity=0.214  Sum_probs=64.5

Q ss_pred             CceeEEEEeeeeee----eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCCCcee
Q 014317          229 PSLLSFRYYGQAIK----INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKLI  302 (427)
Q Consensus       229 p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~  302 (427)
                      |+|+.+.+++..+.    -.+.++..+++++++.+.   +...-...+.++.+|+.|+|.+ +.+.  .+..+.....|.
T Consensus       274 ~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~---l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~~aF~~~~~l~  349 (498)
T KOG4237|consen  274 PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK---LEFVSSGMFQGLSGLKTLSLYD-NQITTVAPGAFQTLFSLS  349 (498)
T ss_pred             ccceEeccCCCccchhhhhhhcchhhhhhhhcCcch---HHHHHHHhhhccccceeeeecC-CeeEEEecccccccceee
Confidence            78888888877443    245667788888888776   3444456678999999999998 7776  556667778888


Q ss_pred             EEEEEEEccCCC-ChHHHHHHHHh
Q 014317          303 DLRLRVTTPNRE-SLLGLTCIMKA  325 (427)
Q Consensus       303 ~L~l~~~~~~~~-~~~~l~~ll~~  325 (427)
                      +|.|-.+...+. .+.|+..-++.
T Consensus       350 ~l~l~~Np~~CnC~l~wl~~Wlr~  373 (498)
T KOG4237|consen  350 TLNLLSNPFNCNCRLAWLGEWLRK  373 (498)
T ss_pred             eeehccCcccCccchHHHHHHHhh
Confidence            888643332222 56666666664

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.19  E-value=0.1  Score=49.45  Aligned_cols=39  Identities=26%  Similarity=0.262  Sum_probs=27.1

Q ss_pred             ccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317          294 SLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLN  337 (427)
Q Consensus       294 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  337 (427)
                      ++..+.+|++|++.-+     +...++-++++|.+|++|+|.++
T Consensus       500 ~l~nm~nL~tLDL~nN-----dlq~IPp~LgnmtnL~hLeL~gN  538 (565)
T KOG0472|consen  500 GLKNMRNLTTLDLQNN-----DLQQIPPILGNMTNLRHLELDGN  538 (565)
T ss_pred             HhhhhhhcceeccCCC-----chhhCChhhccccceeEEEecCC
Confidence            3556667777776322     55667778888888888888764

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=85.97  E-value=0.21  Score=52.29  Aligned_cols=22  Identities=18%  Similarity=0.184  Sum_probs=14.0

Q ss_pred             CCCCCCCCCCCcEEEEeeEEeC
Q 014317          152 SGRGLSGIKFLRCLHFKTVNVN  173 (427)
Q Consensus       152 lp~~~~~~~~L~~L~L~~~~~~  173 (427)
                      +|..+..+.+|+.|+++...|.
T Consensus       106 lP~~~~~lknl~~LdlS~N~f~  127 (1081)
T KOG0618|consen  106 LPASISELKNLQYLDLSFNHFG  127 (1081)
T ss_pred             CchhHHhhhcccccccchhccC
Confidence            4555566667777777766654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=83.09  E-value=0.029  Score=56.92  Aligned_cols=102  Identities=20%  Similarity=0.148  Sum_probs=59.7

Q ss_pred             CCceeEEEEeeeee-e-eeccCCcccceeeeeeccccccchhhcccc-ccCCCceEEEEeccceeecccccCCCCceeEE
Q 014317          228 APSLLSFRYYGQAI-K-INIENVPQLVDVSIRGSHTFRVTYFVGPII-SCFPQLKTLELDSCNEVYMQFSLFELPKLIDL  304 (427)
Q Consensus       228 ~p~L~~L~~~~~~~-~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~-~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L  304 (427)
                      .|.|++|+++.+.+ . -.+..++.|+.++++.+....    +..+- .+|. |..|.+.+ +.+....++..+.+|++|
T Consensus       186 l~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~----vp~l~~~gc~-L~~L~lrn-N~l~tL~gie~LksL~~L  259 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRH----VPQLSMVGCK-LQLLNLRN-NALTTLRGIENLKSLYGL  259 (1096)
T ss_pred             HHHhhhhccchhhhhhhHHHHhcccccccccccchhcc----ccccchhhhh-heeeeecc-cHHHhhhhHHhhhhhhcc
Confidence            47777777765532 1 134567788888887766432    12222 2333 77777776 555544556677788888


Q ss_pred             EEEEEccCCCChHHHHHHHHhCCCccEEEEEecc
Q 014317          305 RLRVTTPNRESLLGLTCIMKACPFLQKLILQLND  338 (427)
Q Consensus       305 ~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~  338 (427)
                      +++.+.-...   .-..+|.....|..|.++++.
T Consensus       260 DlsyNll~~h---seL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  260 DLSYNLLSEH---SELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             chhHhhhhcc---hhhhHHHHHHHHHHHhhcCCc
Confidence            8865532221   123344555667788888763

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.96  E-value=0.04  Score=49.56  Aligned_cols=96  Identities=14%  Similarity=0.178  Sum_probs=47.5

Q ss_pred             cceeeeccCCCceeEEEecCccccceEEEEecCCccEEE--EECCceeEEEEeeeeee-----eeccCCcccceeeeeec
Q 014317          187 LDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIE--ISAPSLLSFRYYGQAIK-----INIENVPQLVDVSIRGS  259 (427)
Q Consensus       187 Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~--i~~p~L~~L~~~~~~~~-----~~~~~~~~L~~l~l~~~  259 (427)
                      .++|+..+|. ++++.|...-+.|+.|.++-.. +..+.  .+|.+|++|++..+.+.     ..+.++|+|+.+++.-+
T Consensus        21 vkKLNcwg~~-L~DIsic~kMp~lEVLsLSvNk-IssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN   98 (388)
T KOG2123|consen   21 VKKLNCWGCG-LDDISICEKMPLLEVLSLSVNK-ISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN   98 (388)
T ss_pred             hhhhcccCCC-ccHHHHHHhcccceeEEeeccc-cccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence            3345444442 3333443333566666665433 22221  23566666666544221     23467788888887765


Q ss_pred             cccc-cch-hhccccccCCCceEEEEe
Q 014317          260 HTFR-VTY-FVGPIISCFPQLKTLELD  284 (427)
Q Consensus       260 ~~~~-~~~-~~~~~~~~~~~l~~L~l~  284 (427)
                      .... .+. .-...+..+|+|+.|+=.
T Consensus        99 PCc~~ag~nYR~~VLR~LPnLkKLDnv  125 (388)
T KOG2123|consen   99 PCCGEAGQNYRRKVLRVLPNLKKLDNV  125 (388)
T ss_pred             CcccccchhHHHHHHHHcccchhccCc
Confidence            4433 111 112234566777766543

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=82.26  E-value=0.67  Score=46.96  Aligned_cols=40  Identities=20%  Similarity=0.426  Sum_probs=37.0

Q ss_pred             ccCCCcCCCCChHHHHHHHhcCChHHHHHHhhhhhhhhhh
Q 014317           10 EISEDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNL   49 (427)
Q Consensus        10 ~~~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vskrW~~l   49 (427)
                      ....|.++.||-|+...|+++|+.++.+..+.||+.|+.+
T Consensus       102 ~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~  141 (537)
T KOG0274|consen  102 LGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL  141 (537)
T ss_pred             ccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence            3457999999999999999999999999999999999876

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=80.89  E-value=0.84  Score=40.87  Aligned_cols=63  Identities=25%  Similarity=0.238  Sum_probs=38.3

Q ss_pred             ccCCCceEEEEeccceeecccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEecc
Q 014317          273 SCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLND  338 (427)
Q Consensus       273 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~  338 (427)
                      ..+..++.|.+.+ ..+.....++.+++|+.|.++-+...  ...++..++..||+|++|+++++.
T Consensus        40 d~~~~le~ls~~n-~gltt~~~~P~Lp~LkkL~lsdn~~~--~~~~l~vl~e~~P~l~~l~ls~Nk  102 (260)
T KOG2739|consen   40 DEFVELELLSVIN-VGLTTLTNFPKLPKLKKLELSDNYRR--VSGGLEVLAEKAPNLKVLNLSGNK  102 (260)
T ss_pred             ccccchhhhhhhc-cceeecccCCCcchhhhhcccCCccc--ccccceehhhhCCceeEEeecCCc
Confidence            3444555555544 22333445677888898888544221  223355667788999999998764

>PLN03150 hypothetical protein; Provisional

Probab=80.47  E-value=2.1  Score=44.51  Aligned_cols=62  Identities=23%  Similarity=0.304  Sum_probs=36.9

Q ss_pred             eccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCCCceeEEEEEEE
Q 014317          244 NIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKLIDLRLRVT  309 (427)
Q Consensus       244 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~  309 (427)
                      .+..++.|+.+++..+..   ...+...+..+++|+.|+|+. +.+.  .|..+..+++|+.|+|+.+
T Consensus       437 ~i~~L~~L~~L~Ls~N~l---~g~iP~~~~~l~~L~~LdLs~-N~lsg~iP~~l~~L~~L~~L~Ls~N  500 (623)
T PLN03150        437 DISKLRHLQSINLSGNSI---RGNIPPSLGSITSLEVLDLSY-NSFNGSIPESLGQLTSLRILNLNGN  500 (623)
T ss_pred             HHhCCCCCCEEECCCCcc---cCcCChHHhCCCCCCEEECCC-CCCCCCCchHHhcCCCCCEEECcCC
Confidence            345566677777766552   222333346677777777776 3333  5556666777777777543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=80.32  E-value=1.8  Score=27.40  Aligned_cols=12  Identities=33%  Similarity=0.390  Sum_probs=5.5

Q ss_pred             HhCCCccEEEEE
Q 014317          324 KACPFLQKLILQ  335 (427)
Q Consensus       324 ~~~p~L~~L~i~  335 (427)
                      .++|+|+.|+++
T Consensus        21 ~~l~~L~~L~l~   32 (44)
T PF12799_consen   21 SNLPNLETLNLS   32 (44)
T ss_dssp             TTCTTSSEEEET
T ss_pred             hCCCCCCEEEec
Confidence            444444444443

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	427
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-06
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	2e-05

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 63/365 (17%), Positives = 112/365 (30%), Gaps = 69/365 (18%)

Query: 8   KEEISEDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTNSLEFDASESLWNV 67
           +E       + LPD++L+ I S L L E  + S +  RW  L          + ESLW  
Sbjct: 1   RENFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL---------ASDESLW-- 49

Query: 68  GFGNLEQERSKYINWVNNVLELHRGSTINEFKVRFDLCDFHQSDITNWVYTVLGKRVQYI 127
                  +         +     R  +      R            +          +  
Sbjct: 50  -------QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRS------FMDQPLAEHFSPFRVQ 96

Query: 128 KLDLWPGRYGHYYTFPKEFYNSIESGRGLSGI----KFLRCLHFKTVNVNGKDIELFIQN 183
            +DL                NS+     L GI      L+ L  + + ++   +   +  
Sbjct: 97  HMDLS---------------NSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAK 140

Query: 184 CPLLDRLCVDHSK--TLVRLRVIGSSI-QLKYLEIQSCYLMEEIEISA------PSLLSF 234
              L RL +      +   L+ + SS  +L  L +  C+   E  +         ++   
Sbjct: 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200

Query: 235 RYYG-------QAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCN 287
              G         +   +   P LV + +  S    +             L+ L L  C 
Sbjct: 201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV--MLKNDCFQEFFQLNYLQHLSLSRCY 258

Query: 288 EVYMQ--FSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRR-LG 344
           ++  +    L E+P L  L++    P+      L  + +A P LQ          R  +G
Sbjct: 259 DIIPETLLELGEIPTLKTLQVFGIVPDG----TLQLLKEALPHLQINCSHFTTIARPTIG 314

Query: 345 KKRQQ 349
            K+ Q
Sbjct: 315 NKKNQ 319

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 40/354 (11%), Positives = 90/354 (25%), Gaps = 73/354 (20%)

Query: 11  ISEDLINRLPDDILVNIISHLT----LKEAARTSVLSNRWRNLWTFTNSLEFDASESLWN 66
           + + +    P+++L ++ S +         +        W  +  +           + N
Sbjct: 1   MQKRIALSFPEEVLEHVFSFIQLDKDRNSVSLV---CKSWYEIERWCRR-----KVFIGN 52

Query: 67  VGFGNLEQERSKYINWVNNVLELHRGSTINEFKVRFDLCDFHQSDITNWVYTVLGKRVQY 126
               +      ++    +  +EL       +F +  D    +   +  W+  +       
Sbjct: 53  CYAVSPATVIRRFPKVRS--VELKGKPHFADFNLVPDGWGGY---VYPWIEAMSSSYTWL 107

Query: 127 IKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGI----KFLRCLHF-KTVNVNGKDIELFI 181
            ++ L                  + +   L  I    K  + L        +   +    
Sbjct: 108 EEIRL---------------KRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIA 152

Query: 182 QNCPLLDRLCVDHSK----TLVRLRVIGSS-IQLKYLEIQSCYLMEEIEISAPSLLSFRY 236
             C  L  L +  S     +   L     +   L  L I         E+S  +L     
Sbjct: 153 ATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCL----ASEVSFSALERL-- 206

Query: 237 YGQAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY------ 290
                   +   P L  + +  +        +  ++   PQL+ L               
Sbjct: 207 --------VTRCPNLKSLKLNRAVPLEK---LATLLQRAPQLEELGTGGYTAEVRPDVYS 255

Query: 291 -MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLIL---QLNDHG 340
            +  +L    +L  L              L  +   C  L  L L    +  + 
Sbjct: 256 GLSVALSGCKELRCLSGF----WDAVPAYLPAVYSVCSRLTTLNLSYATVQSYD 305

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 36/255 (14%), Positives = 83/255 (32%), Gaps = 30/255 (11%)

Query: 162 LRCLHFK--TVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSI-QLKYLEIQSC 218
           L  L+       V+   +E  +  CP L  L ++ +  L +L  +     QL+ L     
Sbjct: 186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245

Query: 219 Y------LMEEIEISAPSLLSFRY-------YGQAIKINIENVPQLVDVSIRGSHTFRVT 265
                  +   + ++       R            +        +L  +++  S+    +
Sbjct: 246 TAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNL--SYATVQS 303

Query: 266 YFVGPIISCFPQLKTLELDSCNEVYMQFSLFE-LPKLIDLRLRVTTPNRESL------LG 318
           Y +  ++   P+L+ L +    E      L      L +LR+  + P            G
Sbjct: 304 YDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG 363

Query: 319 LTCIMKACPFLQKLIL---QLNDHG-RRLGKKRQQFPKYSHQHLKVVELHGFLGRQFDVE 374
           L  +   CP L+ ++    Q+ +     + + R    ++    ++            D+ 
Sbjct: 364 LVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIG 423

Query: 375 LAQYLFQNATMLEKL 389
               + ++   L +L
Sbjct: 424 F-GAIVEHCKDLRRL 437

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 47.6 bits (113), Expect = 5e-06
 Identities = 62/405 (15%), Positives = 119/405 (29%), Gaps = 95/405 (23%)

Query: 16  INRLPDDILVNIISHLT----LKEAARTSVLSNRWRNL---WTFTNSLEFDASESLWNV- 67
                DD++  +++++T       A+       RW  +        ++    + +   + 
Sbjct: 13  CVATVDDVIEQVMTYITDPKDRDSASLV---CRRWFKIDSETREHVTMALCYTATPDRLS 69

Query: 68  -GFGNLEQERSKYINWVNNVLELHRGSTINEFKVRFDLCDFHQSDITNWVYTVLGKRVQY 126
             F NL              L+L        F +  +    +   +T WV  +     Q 
Sbjct: 70  RRFPNLRS------------LKLKGKPRAAMFNLIPENWGGY---VTPWVTEISNNLRQL 114

Query: 127 IKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVNG------KDIELF 180
             +                    I S   L  +   R    +T+ ++         +   
Sbjct: 115 KSVHFR---------------RMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSI 159

Query: 181 IQNCPLLDRL----CVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRY 236
           + +C  +  L         K    L  +        LE+ + Y+ E  +IS   L +   
Sbjct: 160 VTHCRKIKTLLMEESSFSEKDGKWLHELAQH--NTSLEVLNFYMTEFAKISPKDLETIAR 217

Query: 237 YGQAIK-INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNE----VYM 291
             +++  + + +   L  V                       L+     S NE       
Sbjct: 218 NCRSLVSVKVGDFEILELVG---------------FFKAAANLEEFCGGSLNEDIGMPEK 262

Query: 292 QFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLIL----QLNDHGRRLGKKR 347
             +L    KL  L L    PN      +  +      ++KL L       +    L +K 
Sbjct: 263 YMNLVFPRKLCRLGLSYMGPN-----EMPILFPFAAQIRKLDLLYALLETEDHCTLIQK- 316

Query: 348 QQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIE 392
                    +L+V+E    +G   D  L + L Q    L++L IE
Sbjct: 317 -------CPNLEVLETRNVIG---DRGL-EVLAQYCKQLKRLRIE 350

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.1 bits (96), Expect = 6e-04
 Identities = 38/205 (18%), Positives = 64/205 (31%), Gaps = 34/205 (16%)

Query: 162 LRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSS-IQLKYLEIQSCYL 220
           +R L      +  +D    IQ CP L+ L   +      L V+     QLK L I+    
Sbjct: 295 IRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGAD 354

Query: 221 MEEIEISA---------------PSLLSFRYYG-----QAIKINIENVPQLVDVSIRG-S 259
            + +E                    L     Y      ++++     +  L D  +    
Sbjct: 355 EQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLD 414

Query: 260 HTFRVTYF-----VGPIISCFPQLKTLELDSCNEVYMQFSLFEL----PKLIDLRLRVTT 310
              R+T       V  ++    +L+               L  +    P +  + L    
Sbjct: 415 REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV- 473

Query: 311 PNRESLLGLTCIMKACPFLQKLILQ 335
              ES  GL    + CP LQKL ++
Sbjct: 474 --GESDEGLMEFSRGCPNLQKLEMR 496

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 9e-06
 Identities = 75/441 (17%), Positives = 134/441 (30%), Gaps = 130/441 (29%)

Query: 44  NRWRNLWTFTNSLEFDASESLWNV------GFGNLEQERSKYINW-VNNVLELHRGSTIN 96
           +R +       +L         NV      G G       K   W   +V   ++     
Sbjct: 132 SRLQPYLKLRQALLELRPAK--NVLIDGVLGSG-------K--TWVALDVCLSYKVQCKM 180

Query: 97  EFKV---RFDLCDFHQSDITNWVYTVLGKRVQ--YIKLDL-WPGRYGHYYTFPKEFYNSI 150
           +FK+       C+  ++ +         + +Q    ++D  W  R  H         +SI
Sbjct: 181 DFKIFWLNLKNCNSPETVL---------EMLQKLLYQIDPNWTSRSDHSSNIKLRI-HSI 230

Query: 151 ESG--RGLSGIKFLRCLHFKTV--NV-NGKDIELFIQNCPLL----DRLCVDHSKTLVRL 201
           ++   R L    +  CL    V  NV N K    F  +C +L     +   D        
Sbjct: 231 QAELRRLLKSKPYENCL---LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287

Query: 202 RVIGSSIQLKYLEIQSCYLMEE-IEISAPSLLSFRYYGQAIKINIENVPQLVDV---SIR 257
            +      +     +   L+ + ++     L       + +  N    P+ + +   SIR
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-----EVLTTN----PRRLSIIAESIR 338

Query: 258 GSHTFRVTYF-------VGPIISCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLRVTT 310
                    +       +  II     L  LE     +++ + S+F  P           
Sbjct: 339 -DGLATWDNWKHVNCDKLTTIIESS--LNVLEPAEYRKMFDRLSVF--PP--S----AHI 387

Query: 311 PNRESLLGL-------TCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYS----HQHLK 359
           P    LL L       + +M     + KL      H   L +K+ +    S    +  LK
Sbjct: 388 P--TILLSLIWFDVIKSDVMV---VVNKL------HKYSLVEKQPKESTISIPSIYLELK 436

Query: 360 V-----VELHGFL------GRQFDVE------LAQYLFQ-------NATMLEKLIIEPSR 395
           V       LH  +       + FD +      L QY +        N    E++ +    
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496

Query: 396 YVRKKVLRNCVKMLEAKVPHS 416
           ++     R     LE K+ H 
Sbjct: 497 FLD---FR----FLEQKIRHD 510

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 14/42 (33%), Positives = 21/42 (50%)

Query: 8  KEEISEDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNL 49
          +E       + LPD++L+ I S L L E  + S +  RW  L
Sbjct: 1  RENFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL 42

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	427
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.85
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.76
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.14
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.98
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.91
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.87
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.81
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.81
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.79
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.75
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.7
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.68
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.67
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.65
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.64
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.63
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.63
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.62
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.61
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.6
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.58
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.58
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.56
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.55
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.54
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.53
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.52
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.52
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.51
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.51
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.5
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.5
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.5
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.5
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.48
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.47
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.47
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.47
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.46
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.46
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.45
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.45
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.45
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.44
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.44
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.42
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.41
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.41
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.41
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.4
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.4
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.4
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.37
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.35
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.34
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.32
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.3
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.3
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.29
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.28
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.28
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.27
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.26
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.25
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.24
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.24
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.23
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.19
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.18
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.17
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.14
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.14
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.09
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.07
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.03
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.02
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.01
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.0
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.98
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.97
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.97
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.94
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.91
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.9
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.87
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.83
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	97.82
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.8
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.77
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.74
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.71
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.69
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.64
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.61
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.6
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.56
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.55
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.54
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.53
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.52
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.5
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.47
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.45
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.37
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.35
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.31
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.27
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.2
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.18
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.18
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.01
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	96.94
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	96.88
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	96.82
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	96.75
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	96.63
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	96.62
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.36
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	96.29
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.27
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	96.09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	96.09
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	96.04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	95.99
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	95.95
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	95.76
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	95.66
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	95.63
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	95.62
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	95.48
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	95.39
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	95.28
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	95.07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	94.68
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	94.65
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	92.69
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	92.67
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	90.93
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	90.54
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	90.07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	86.11
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	81.89
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	80.19

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.85  E-value=3.3e-21  Score=196.83  Aligned_cols=153  Identities=11%  Similarity=0.201  Sum_probs=95.3

Q ss_pred             CCCcCCCCChHHHHHHHhcCC-hHHHHHHhhhhhhhhhhccc-CceeeEecCccccccCCCCchhhHHHHHHHHHHHHHh
Q 014317           12 SEDLINRLPDDILVNIISHLT-LKEAARTSVLSNRWRNLWTF-TNSLEFDASESLWNVGFGNLEQERSKYINWVNNVLEL   89 (427)
Q Consensus        12 ~~D~is~LPd~iL~~Ils~L~-~~d~~r~s~vskrW~~lw~~-~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~   89 (427)
                      ..|+|+.|||||+.+||+||| ++|++++++|||||+++... ...+.+......          ...       ..+.+
T Consensus         2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~----------~~~-------~~~~~   64 (594)
T 2p1m_B            2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAV----------SPA-------TVIRR   64 (594)
T ss_dssp             --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSS----------CHH-------HHHHH
T ss_pred             cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeecccccc----------CHH-------HHHhh
Confidence            358999999999999999999 99999999999999988221 112333322110          010       22222


Q ss_pred             ccCCCeeEEEEEEecC--------CCCCccHHHHHHHHhc--CCceEEEEEecCCCCCccccccccccccccCCCCCCCC
Q 014317           90 HRGSTINEFKVRFDLC--------DFHQSDITNWVYTVLG--KRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGI  159 (427)
Q Consensus        90 ~~~~~l~~l~l~~~~~--------~~~~~~~~~wl~~~~~--~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~  159 (427)
                        -+.++++.+.....        ......+..|+.....  +++++|++..+...    ...+..+         ...+
T Consensus        65 --~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~----~~~~~~l---------~~~~  129 (594)
T 2p1m_B           65 --FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVT----DDCLELI---------AKSF  129 (594)
T ss_dssp             --CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCC----HHHHHHH---------HHHC
T ss_pred             --CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEc----HHHHHHH---------HHhC
Confidence              23489998876321        1112456778887653  58999999865321    0111111         1257


Q ss_pred             CCCcEEEEeeE-EeChhhHHHHHhcCCccceeeeccCC
Q 014317          160 KFLRCLHFKTV-NVNGKDIELFIQNCPLLDRLCVDHSK  196 (427)
Q Consensus       160 ~~L~~L~L~~~-~~~~~~l~~ll~~cp~Le~L~l~~c~  196 (427)
                      ++|++|+|.+| .+++..+..++..||+|++|++.+|.
T Consensus       130 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  167 (594)
T 2p1m_B          130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD  167 (594)
T ss_dssp             TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred             CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence            89999999988 57777788888889999999998775

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.85  E-value=1.6e-20  Score=191.66  Aligned_cols=103  Identities=11%  Similarity=0.176  Sum_probs=59.7

Q ss_pred             cCCCcCC----CCChHHHHHHHhcC-ChHHHHHHhhhhhhhhhhcccCce-eeEecCccccccCCCCchhhHHHHHHHHH
Q 014317           11 ISEDLIN----RLPDDILVNIISHL-TLKEAARTSVLSNRWRNLWTFTNS-LEFDASESLWNVGFGNLEQERSKYINWVN   84 (427)
Q Consensus        11 ~~~D~is----~LPd~iL~~Ils~L-~~~d~~r~s~vskrW~~lw~~~~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~v~   84 (427)
                      ++.|+++    +||||++.+||+|| +++|++++++|||||++++..... +.+.. .+.                ....
T Consensus         4 ~~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~-~~~----------------~~~~   66 (592)
T 3ogk_B            4 PDIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMAL-CYT----------------ATPD   66 (592)
T ss_dssp             --------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESC-GGG----------------SCHH
T ss_pred             hhhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEee-ccc----------------cChH
Confidence            3456665    89999999999999 899999999999999998543321 22211 110                0112


Q ss_pred             HHHHhccCCCeeEEEEEEecC--------CCCCccHHHHHHHHhc--CCceEEEEEec
Q 014317           85 NVLELHRGSTINEFKVRFDLC--------DFHQSDITNWVYTVLG--KRVQYIKLDLW  132 (427)
Q Consensus        85 ~~l~~~~~~~l~~l~l~~~~~--------~~~~~~~~~wl~~~~~--~~v~~L~l~~~  132 (427)
                      .++.+.+.  ++++.++....        .........|+.....  +++++|++..+
T Consensus        67 ~~~~~~~~--L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  122 (592)
T 3ogk_B           67 RLSRRFPN--LRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM  122 (592)
T ss_dssp             HHHHHCTT--CSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC
T ss_pred             HHHHhCCC--CeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc
Confidence            23333333  88888765211        1122344567766543  57888888754

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.76  E-value=3e-20  Score=176.12  Aligned_cols=145  Identities=15%  Similarity=0.186  Sum_probs=87.3

Q ss_pred             CCCcCCCCChHHHHHHHhcCChHHHHHHhhhhhhhhhhccc---CceeeEecCccccccCCCCchhhHHHHHHHHHHHHH
Q 014317           12 SEDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTF---TNSLEFDASESLWNVGFGNLEQERSKYINWVNNVLE   88 (427)
Q Consensus        12 ~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vskrW~~lw~~---~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~   88 (427)
                      ....|++||||++.+||++|+.+|+++++.|||+|+++...   ...+++....+.                        
T Consensus         5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~------------------------   60 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLH------------------------   60 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCC------------------------
T ss_pred             ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCC------------------------
Confidence            34568999999999999999999999999999999998532   112333222111                        


Q ss_pred             hccCCCeeEEEEEEecCCCCCccHHHHHHHHhcCCceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEe
Q 014317           89 LHRGSTINEFKVRFDLCDFHQSDITNWVYTVLGKRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFK  168 (427)
Q Consensus        89 ~~~~~~l~~l~l~~~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~  168 (427)
                                              ...+......+++.+.+......     .          .++.+..+++|++|+|.
T Consensus        61 ------------------------~~~~~~~~~~~l~~L~l~~n~l~-----~----------~~~~~~~~~~L~~L~L~  101 (336)
T 2ast_B           61 ------------------------PDVTGRLLSQGVIAFRCPRSFMD-----Q----------PLAEHFSPFRVQHMDLS  101 (336)
T ss_dssp             ------------------------HHHHHHHHHTTCSEEECTTCEEC-----S----------CCCSCCCCBCCCEEECT
T ss_pred             ------------------------HHHHHhhhhccceEEEcCCcccc-----c----------cchhhccCCCCCEEEcc
Confidence                                    11222222334444444321100     0          11113456788888888


Q ss_pred             eEEeChhhHHHHHhcCCccceeeeccCCCcee-EEEecCccccceEEEEecC
Q 014317          169 TVNVNGKDIELFIQNCPLLDRLCVDHSKTLVR-LRVIGSSIQLKYLEIQSCY  219 (427)
Q Consensus       169 ~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~-l~i~~~~~~L~~L~l~~c~  219 (427)
                      ++.+.+..+..++..||+|++|++.+|...+. ...-+.+++|++|.+++|.
T Consensus       102 ~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~  153 (336)
T 2ast_B          102 NSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS  153 (336)
T ss_dssp             TCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCB
T ss_pred             CCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCC
Confidence            87777766777777888888888877742211 1111234667777666663

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.14  E-value=6.3e-11  Score=111.48  Aligned_cols=173  Identities=21%  Similarity=0.228  Sum_probs=91.1

Q ss_pred             CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEE----------
Q 014317          156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIE----------  225 (427)
Q Consensus       156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~----------  225 (427)
                      +..+++|++|+|.++.+.  .+...+..++.|+.|++.++........-..+++|+.|.+++|.....+.          
T Consensus       100 l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~  177 (328)
T 4fcg_A          100 AFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASG  177 (328)
T ss_dssp             GGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred             hhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence            344556666666555443  11122344556666666555322100001123555666665554322211          


Q ss_pred             --EECCceeEEEEeeeee---eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCC
Q 014317          226 --ISAPSLLSFRYYGQAI---KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELP  299 (427)
Q Consensus       226 --i~~p~L~~L~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~  299 (427)
                        -..++|++|++.++..   +..+..++.|+.+++..+....    +...+..+++|+.|++++|.... .+..+..++
T Consensus       178 ~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~----l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~  253 (328)
T 4fcg_A          178 EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA----LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA  253 (328)
T ss_dssp             CEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC----CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCC
T ss_pred             hhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc----CchhhccCCCCCEEECcCCcchhhhHHHhcCCC
Confidence              1256677776666532   2235567777777777666332    22224577788888888754444 555666777


Q ss_pred             ceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEecc
Q 014317          300 KLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLND  338 (427)
Q Consensus       300 ~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~  338 (427)
                      +|++|+++.+.... .   ++.-+..+++|++|+|+++.
T Consensus       254 ~L~~L~L~~n~~~~-~---~p~~~~~l~~L~~L~L~~n~  288 (328)
T 4fcg_A          254 PLKRLILKDCSNLL-T---LPLDIHRLTQLEKLDLRGCV  288 (328)
T ss_dssp             CCCEEECTTCTTCC-B---CCTTGGGCTTCCEEECTTCT
T ss_pred             CCCEEECCCCCchh-h---cchhhhcCCCCCEEeCCCCC
Confidence            78887774321111 1   12234677888888887553

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.04  E-value=3.5e-11  Score=122.45  Aligned_cols=174  Identities=19%  Similarity=0.248  Sum_probs=102.8

Q ss_pred             CCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE---EEecCccccceEEEEecCCcc--------EEE
Q 014317          157 SGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL---RVIGSSIQLKYLEIQSCYLME--------EIE  225 (427)
Q Consensus       157 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l---~i~~~~~~L~~L~l~~c~~l~--------~~~  225 (427)
                      ..+++|++|+|.++.+.+..+..+...||+|++|++.+|..+...   .+...+++|++|.+++|. +.        .+.
T Consensus       102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~  180 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFP  180 (594)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSC
T ss_pred             HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHh
Confidence            367899999999999998888888778999999999999644321   122246788888877664 11        111


Q ss_pred             EECCceeEEEEeeee--e-----eeeccCCcccceeeeeeccc-------------------------------------
Q 014317          226 ISAPSLLSFRYYGQA--I-----KINIENVPQLVDVSIRGSHT-------------------------------------  261 (427)
Q Consensus       226 i~~p~L~~L~~~~~~--~-----~~~~~~~~~L~~l~l~~~~~-------------------------------------  261 (427)
                      ...|+|++|++.++.  .     .....++++|+.+.+..+..                                     
T Consensus       181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~  260 (594)
T 2p1m_B          181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA  260 (594)
T ss_dssp             TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred             hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence            123566666655432  0     00112234455555443310                                     


Q ss_pred             -------------cc-cchhhccccccCCCceEEEEeccceee---cccccCCCCceeEEEEEEEccCCCChHHHHHHHH
Q 014317          262 -------------FR-VTYFVGPIISCFPQLKTLELDSCNEVY---MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMK  324 (427)
Q Consensus       262 -------------~~-~~~~~~~~~~~~~~l~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~  324 (427)
                                   .. ....+..++..+++|+.|++++|. +.   ....+..+++|++|.+..+    ....++..+..
T Consensus       261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~----~~~~~l~~l~~  335 (594)
T 2p1m_B          261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY----IEDAGLEVLAS  335 (594)
T ss_dssp             HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG----GHHHHHHHHHH
T ss_pred             HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc----cCHHHHHHHHH
Confidence                         00 001122223356777777777754 43   2233456778888887532    23344566667


Q ss_pred             hCCCccEEEEEe
Q 014317          325 ACPFLQKLILQL  336 (427)
Q Consensus       325 ~~p~L~~L~i~~  336 (427)
                      .||+|++|.|..
T Consensus       336 ~~~~L~~L~L~~  347 (594)
T 2p1m_B          336 TCKDLRELRVFP  347 (594)
T ss_dssp             HCTTCCEEEEEC
T ss_pred             hCCCCCEEEEec
Confidence            788888888854

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.98  E-value=7.2e-11  Score=120.15  Aligned_cols=62  Identities=19%  Similarity=0.206  Sum_probs=40.4

Q ss_pred             ccccccCCCceEEEEeccceee---cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEE
Q 014317          269 GPIISCFPQLKTLELDSCNEVY---MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQ  335 (427)
Q Consensus       269 ~~~~~~~~~l~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~  335 (427)
                      ..++..+++|+.|++++|. +.   ....+..+++|++|++. +   .....++..+..+||+|++|+|.
T Consensus       286 ~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~-~---~~~~~~l~~~~~~~~~L~~L~L~  350 (592)
T 3ogk_B          286 PILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR-N---VIGDRGLEVLAQYCKQLKRLRIE  350 (592)
T ss_dssp             GGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE-G---GGHHHHHHHHHHHCTTCCEEEEE
T ss_pred             HHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc-C---ccCHHHHHHHHHhCCCCCEEEee
Confidence            3445667788888888755 43   22334677888888875 1   11334566677778888888887

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.91  E-value=3.3e-10  Score=106.55  Aligned_cols=221  Identities=16%  Similarity=0.206  Sum_probs=148.1

Q ss_pred             HHHHhccCCCeeEEEEEEecCCCCCccHHHHHHHHhcCCceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcE
Q 014317           85 NVLELHRGSTINEFKVRFDLCDFHQSDITNWVYTVLGKRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRC  164 (427)
Q Consensus        85 ~~l~~~~~~~l~~l~l~~~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~  164 (427)
                      ..+.......++.+.+....-.    .+...+.  .-.+++.|.+......               .+|..+..+++|++
T Consensus        73 ~~l~~~~~~~l~~L~L~~n~l~----~lp~~l~--~l~~L~~L~L~~n~l~---------------~lp~~~~~l~~L~~  131 (328)
T 4fcg_A           73 DLLEDATQPGRVALELRSVPLP----QFPDQAF--RLSHLQHMTIDAAGLM---------------ELPDTMQQFAGLET  131 (328)
T ss_dssp             HHHHHHTSTTCCEEEEESSCCS----SCCSCGG--GGTTCSEEEEESSCCC---------------CCCSCGGGGTTCSE
T ss_pred             HHHhcccccceeEEEccCCCch----hcChhhh--hCCCCCEEECCCCCcc---------------chhHHHhccCCCCE
Confidence            3333333444888888643211    1111111  1358899999765321               24555778999999


Q ss_pred             EEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEE--Ee--------cCccccceEEEEecCCccEEEE---ECCce
Q 014317          165 LHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLR--VI--------GSSIQLKYLEIQSCYLMEEIEI---SAPSL  231 (427)
Q Consensus       165 L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~--i~--------~~~~~L~~L~l~~c~~l~~~~i---~~p~L  231 (427)
                      |+|.++.+.  .+..-+..++.|+.|++.+|...+.+.  +.        ..+++|+.|.++++. +..+.-   ..++|
T Consensus       132 L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L  208 (328)
T 4fcg_A          132 LTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNL  208 (328)
T ss_dssp             EEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTC
T ss_pred             EECCCCccc--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCC
Confidence            999998876  233337789999999999987554321  10        125899999999986 443321   24899


Q ss_pred             eEEEEeeeee---eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeEEEEE
Q 014317          232 LSFRYYGQAI---KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLR  307 (427)
Q Consensus       232 ~~L~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~  307 (427)
                      ++|++.++..   +..+..++.|+.+++..+...   ..+...+..+++|+.|++++|.... .+..+..+++|++|+|+
T Consensus       209 ~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~---~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~  285 (328)
T 4fcg_A          209 KSLKIRNSPLSALGPAIHHLPKLEELDLRGCTAL---RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR  285 (328)
T ss_dssp             CEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTC---CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECT
T ss_pred             CEEEccCCCCCcCchhhccCCCCCEEECcCCcch---hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCC
Confidence            9999988743   234677899999999886632   2344456789999999999866555 67777889999999985


Q ss_pred             EEccCCCChHHHHHHHHhCCCccEEEEEe
Q 014317          308 VTTPNRESLLGLTCIMKACPFLQKLILQL  336 (427)
Q Consensus       308 ~~~~~~~~~~~l~~ll~~~p~L~~L~i~~  336 (427)
                      .+....    .++.-+..+++|+.+.+..
T Consensus       286 ~n~~~~----~iP~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          286 GCVNLS----RLPSLIAQLPANCIILVPP  310 (328)
T ss_dssp             TCTTCC----CCCGGGGGSCTTCEEECCG
T ss_pred             CCCchh----hccHHHhhccCceEEeCCH
Confidence            432211    2344567899999998863

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.87  E-value=1.4e-09  Score=72.38  Aligned_cols=40  Identities=33%  Similarity=0.504  Sum_probs=34.1

Q ss_pred             CCCcCCCCChHHHHHHHhcCChHHHHHHhhhhhhhhhhcc
Q 014317           12 SEDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWT   51 (427)
Q Consensus        12 ~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vskrW~~lw~   51 (427)
                      ..+.|+.||+|++.+||++||.+|.++++.|||+|+.+..
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~   44 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   44 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            4567999999999999999999999999999999998743

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.81  E-value=1.7e-08  Score=95.65  Aligned_cols=219  Identities=11%  Similarity=0.070  Sum_probs=138.2

Q ss_pred             CCCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE--EEecCccccceEEEEecCCccEEEE----E
Q 014317          154 RGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL--RVIGSSIQLKYLEIQSCYLMEEIEI----S  227 (427)
Q Consensus       154 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l--~i~~~~~~L~~L~l~~c~~l~~~~i----~  227 (427)
                      ..+..+++|++|+|.++.+..-. ...+..+++|+.|++.++......  ..-..+++|+.|.++++..+..+..    .
T Consensus        94 ~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  172 (353)
T 2z80_A           94 DSFSSLGSLEHLDLSYNYLSNLS-SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG  172 (353)
T ss_dssp             TTTTTCTTCCEEECCSSCCSSCC-HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred             hhcCCCCCCCEEECCCCcCCcCC-HhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccC
Confidence            34678899999999988776421 233678999999999887533211  1223468999999999865555532    2


Q ss_pred             CCceeEEEEeeeee----eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-c-cc---ccCCC
Q 014317          228 APSLLSFRYYGQAI----KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-M-QF---SLFEL  298 (427)
Q Consensus       228 ~p~L~~L~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~-~~---~~~~~  298 (427)
                      .++|++|++.++..    +..+..++.|+.+++..+...   .....+...+++++.|++++ ..+. . +.   .....
T Consensus       173 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~---~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~~~~~  248 (353)
T 2z80_A          173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI---LLLEIFVDVTSSVECLELRD-TDLDTFHFSELSTGETN  248 (353)
T ss_dssp             CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST---THHHHHHHHTTTEEEEEEES-CBCTTCCCC------CC
T ss_pred             CCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc---cchhhhhhhcccccEEECCC-Ccccccccccccccccc
Confidence            47899999987643    234567888999999877632   22233345789999999997 4443 1 11   12345


Q ss_pred             CceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEece--ecCccHHHHH
Q 014317          299 PKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGF--LGRQFDVELA  376 (427)
Q Consensus       299 ~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f--~g~~~e~~~~  376 (427)
                      ..++.++++...-.......++..+..+++|+.|+++.+.-...+...   +  ....+|+.+.+.+-  .+....+.+.
T Consensus       249 ~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~---~--~~l~~L~~L~L~~N~~~~~~~~l~~l  323 (353)
T 2z80_A          249 SLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGI---F--DRLTSLQKIWLHTNPWDCSCPRIDYL  323 (353)
T ss_dssp             CCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTT---T--TTCTTCCEEECCSSCBCCCHHHHHHH
T ss_pred             chhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHH---H--hcCCCCCEEEeeCCCccCcCCCcHHH
Confidence            667777775443333234456677889999999999866432211110   0  13568999988864  3444445554


Q ss_pred             HHHHhc
Q 014317          377 QYLFQN  382 (427)
Q Consensus       377 ~~ll~~  382 (427)
                      ...+.+
T Consensus       324 ~~~~~~  329 (353)
T 2z80_A          324 SRWLNK  329 (353)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            444443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.81  E-value=3.2e-09  Score=98.62  Aligned_cols=212  Identities=15%  Similarity=0.084  Sum_probs=131.3

Q ss_pred             CCCCCCCcEEEEeeEEeChh-hHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEE-----EECC
Q 014317          156 LSGIKFLRCLHFKTVNVNGK-DIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIE-----ISAP  229 (427)
Q Consensus       156 ~~~~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~-----i~~p  229 (427)
                      +..+++|++|+|.++.+... .....+..++.|+.|++.++...........+++|++|.++++. +..+.     ...+
T Consensus        48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~  126 (306)
T 2z66_A           48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLR  126 (306)
T ss_dssp             TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCT
T ss_pred             hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhcc
Confidence            46889999999998776532 11122446899999999988644322222346889999887654 22111     1247


Q ss_pred             ceeEEEEeeeeee----eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCCCceeE
Q 014317          230 SLLSFRYYGQAIK----INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKLID  303 (427)
Q Consensus       230 ~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~~  303 (427)
                      +|++|++.++...    ..+..++.|+.+++..+....  ......+..+++|+.|++++ ..+.  .+..+..+++|++
T Consensus       127 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~  203 (306)
T 2z66_A          127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE--NFLPDIFTELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQV  203 (306)
T ss_dssp             TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG--GEECSCCTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCE
T ss_pred             CCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc--ccchhHHhhCcCCCEEECCC-CCcCCcCHHHhcCCCCCCE
Confidence            8999998876433    235667889999988765211  12445567889999999998 4444  3566778889999


Q ss_pred             EEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEec--eecCccHHHHHHHH
Q 014317          304 LRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHG--FLGRQFDVELAQYL  379 (427)
Q Consensus       304 L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~--f~g~~~e~~~~~~l  379 (427)
                      |+++.+.-.....    ..+..+++|+.|+++.+.-......  . +. ....+|+.+.+.+  +.+......+.+++
T Consensus       204 L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~--~-~~-~~~~~L~~L~L~~N~~~~~c~~~~~~~~l  273 (306)
T 2z66_A          204 LNMSHNNFFSLDT----FPYKCLNSLQVLDYSLNHIMTSKKQ--E-LQ-HFPSSLAFLNLTQNDFACTCEHQSFLQWI  273 (306)
T ss_dssp             EECTTSCCSBCCS----GGGTTCTTCCEEECTTSCCCBCSSS--S-CC-CCCTTCCEEECTTCCEECSGGGHHHHHHH
T ss_pred             EECCCCccCccCh----hhccCcccCCEeECCCCCCcccCHH--H-HH-hhhccCCEEEccCCCeecccChHHHHHHH
Confidence            9885432211111    1246789999999976532211110  0 11 1124899999876  34544444555554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.79  E-value=1.2e-09  Score=102.03  Aligned_cols=243  Identities=12%  Similarity=0.063  Sum_probs=155.3

Q ss_pred             ccHHHHHHHHhc--CCceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEeeEEeChhhHHHHHhcCCcc
Q 014317          110 SDITNWVYTVLG--KRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLL  187 (427)
Q Consensus       110 ~~~~~wl~~~~~--~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~L  187 (427)
                      ..+...+.....  +++++|++......     .+++.         .+..+++|+.|+|.++.+.+..  . +..++.|
T Consensus        20 ~~l~~~~~~~~~~~~~L~~L~L~~n~l~-----~~~~~---------~~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L   82 (317)
T 3o53_A           20 SSLKQALASLRQSAWNVKELDLSGNPLS-----QISAA---------DLAPFTKLELLNLSSNVLYETL--D-LESLSTL   82 (317)
T ss_dssp             TTHHHHHHHHHTTGGGCSEEECTTSCCC-----CCCHH---------HHTTCTTCCEEECTTSCCEEEE--E-ETTCTTC
T ss_pred             cchhhhHHHHhccCCCCCEEECcCCccC-----cCCHH---------HhhCCCcCCEEECCCCcCCcch--h-hhhcCCC
Confidence            456666665543  47888888655321     22222         2457899999999987664321  1 6789999


Q ss_pred             ceeeeccCCCceeEEEecCccccceEEEEecCCccEEEEE-CCceeEEEEeeeeee----eeccCCcccceeeeeecccc
Q 014317          188 DRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEIS-APSLLSFRYYGQAIK----INIENVPQLVDVSIRGSHTF  262 (427)
Q Consensus       188 e~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~-~p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~  262 (427)
                      +.|++.++.- ..+.   ..++|+.|.++++. +..+... .++|++|++.++...    ..+..++.|+.++++.+...
T Consensus        83 ~~L~Ls~n~l-~~l~---~~~~L~~L~l~~n~-l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  157 (317)
T 3o53_A           83 RTLDLNNNYV-QELL---VGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID  157 (317)
T ss_dssp             CEEECCSSEE-EEEE---ECTTCCEEECCSSC-CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC
T ss_pred             CEEECcCCcc-cccc---CCCCcCEEECCCCc-cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC
Confidence            9999998842 2222   23789999998876 5655444 489999999877432    34566788999999877643


Q ss_pred             ccchhhccccccCCCceEEEEeccceee-cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCC
Q 014317          263 RVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGR  341 (427)
Q Consensus       263 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~  341 (427)
                      .  .....+...+++|+.|++++ +.+. .+ ....+++|++|+++.+.-.  .   +..-+..+++|+.|+++.+.-..
T Consensus       158 ~--~~~~~~~~~l~~L~~L~L~~-N~l~~~~-~~~~l~~L~~L~Ls~N~l~--~---l~~~~~~l~~L~~L~L~~N~l~~  228 (317)
T 3o53_A          158 T--VNFAELAASSDTLEHLNLQY-NFIYDVK-GQVVFAKLKTLDLSSNKLA--F---MGPEFQSAAGVTWISLRNNKLVL  228 (317)
T ss_dssp             E--EEGGGGGGGTTTCCEEECTT-SCCCEEE-CCCCCTTCCEEECCSSCCC--E---ECGGGGGGTTCSEEECTTSCCCE
T ss_pred             c--ccHHHHhhccCcCCEEECCC-CcCcccc-cccccccCCEEECCCCcCC--c---chhhhcccCcccEEECcCCcccc
Confidence            2  11233445789999999998 4444 33 2335789999998543221  1   11225678999999997653221


Q ss_pred             CCCcccccCCCCccCCccEEEEeceecCccHHHHHHHHHhccccccceEEE
Q 014317          342 RLGKKRQQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIE  392 (427)
Q Consensus       342 ~~~~~~~~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i~  392 (427)
                      .+..    +  ....+|+.+.+.+-...+.   .....+...+.|+.+.+.
T Consensus       229 l~~~----~--~~l~~L~~L~l~~N~~~~~---~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          229 IEKA----L--RFSQNLEHFDLRGNGFHCG---TLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             ECTT----C--CCCTTCCEEECTTCCCBHH---HHHHHHHTCHHHHHHHHH
T ss_pred             hhhH----h--hcCCCCCEEEccCCCccCc---CHHHHHhccccceEEECC
Confidence            1111    1  1346888888876544322   233566777888877765

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.75  E-value=3.1e-08  Score=93.94  Aligned_cols=224  Identities=15%  Similarity=0.109  Sum_probs=129.0

Q ss_pred             CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEE--ecCccccceEEEEecCCccEEEE----ECCceeE
Q 014317          160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRV--IGSSIQLKYLEIQSCYLMEEIEI----SAPSLLS  233 (427)
Q Consensus       160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~~~~i----~~p~L~~  233 (427)
                      ++|++|+|.++.+..-.- ..+..++.|+.|++.++...+ +.-  -..+++|++|.++++. +..+..    ..++|++
T Consensus        52 ~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~  128 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISN-SDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTF  128 (353)
T ss_dssp             TTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSE
T ss_pred             ccCcEEECCCCcCcccCH-HHhccCCCCCEEECCCCccCc-cCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCE
Confidence            578888888766543110 124667888888887774322 111  1234678888887765 333321    2478888


Q ss_pred             EEEeeeeee-----eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeEEEEE
Q 014317          234 FRYYGQAIK-----INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLR  307 (427)
Q Consensus       234 L~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~  307 (427)
                      |++.++...     ..+..++.|+.+++..+..  +.......+..+++|+.|+++++.-.. .+..+..+++|++|+++
T Consensus       129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~--~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  206 (353)
T 2z80_A          129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT--FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH  206 (353)
T ss_dssp             EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSS--CCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred             EECCCCCCcccCchhhhccCCCCcEEECCCCcc--ccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC
Confidence            888766332     1456788999999987632  111222345688999999999843222 46667788899999886


Q ss_pred             EEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEeceecCccHHHHHHHHHhcccccc
Q 014317          308 VTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLE  387 (427)
Q Consensus       308 ~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~  387 (427)
                      .+.-  ...  ...++..+++|+.|+++.+.-.........  ..-....++.+.+.+..-....+.-+...+.+.+.|+
T Consensus       207 ~n~l--~~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~--~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~  280 (353)
T 2z80_A          207 MKQH--ILL--LEIFVDVTSSVECLELRDTDLDTFHFSELS--TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLL  280 (353)
T ss_dssp             CSCS--TTH--HHHHHHHTTTEEEEEEESCBCTTCCCC--------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCC
T ss_pred             CCcc--ccc--hhhhhhhcccccEEECCCCccccccccccc--cccccchhhccccccccccCcchhhhHHHHhcccCCC
Confidence            5422  122  133566799999999987643221100000  0012334555555554433333333334456666777


Q ss_pred             ceEEEee
Q 014317          388 KLIIEPS  394 (427)
Q Consensus       388 ~l~i~~~  394 (427)
                      .+.+..+
T Consensus       281 ~L~Ls~N  287 (353)
T 2z80_A          281 ELEFSRN  287 (353)
T ss_dssp             EEECCSS
T ss_pred             EEECCCC
Confidence            7666543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.70  E-value=5.5e-09  Score=98.76  Aligned_cols=212  Identities=17%  Similarity=0.198  Sum_probs=124.4

Q ss_pred             CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEE-E-ECCceeE
Q 014317          156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIE-I-SAPSLLS  233 (427)
Q Consensus       156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~-i-~~p~L~~  233 (427)
                      +..+++|++|+|.++.+.+-.-   +..++.|+.|++.+|.....+.....+++|+.|.+++|. +..+. + ..++|++
T Consensus       106 ~~~l~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~l~~L~~  181 (347)
T 4fmz_A          106 LQNLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTPIANLTDLYS  181 (347)
T ss_dssp             GTTCTTCSEEECTTSCCCCCGG---GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSE
T ss_pred             HcCCCcCCEEECcCCcccCchh---hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchhhccCCCCCE
Confidence            4566777777777766554211   566777777777777544432222345677777777665 22111 1 2467777


Q ss_pred             EEEeeeeeee--eccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeEEEEEEEc
Q 014317          234 FRYYGQAIKI--NIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLRVTT  310 (427)
Q Consensus       234 L~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~  310 (427)
                      |++.++....  .+..++.|+.+.+..+......    . +..+++|+.|.+++| .+. .+. +..+++|++|+++.+.
T Consensus       182 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~----~-~~~~~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~  254 (347)
T 4fmz_A          182 LSLNYNQIEDISPLASLTSLHYFTAYVNQITDIT----P-VANMTRLNSLKIGNN-KITDLSP-LANLSQLTWLEIGTNQ  254 (347)
T ss_dssp             EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG----G-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC
T ss_pred             EEccCCcccccccccCCCccceeecccCCCCCCc----h-hhcCCcCCEEEccCC-ccCCCcc-hhcCCCCCEEECCCCc
Confidence            7776653221  1455667777777665532211    1 467788888888873 333 333 6677888888875432


Q ss_pred             cCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEeceecCccHHHHHHHHHhccccccceE
Q 014317          311 PNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLI  390 (427)
Q Consensus       311 ~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~  390 (427)
                      -.  ..    ..+..+++|+.|+++.+.-...    .. .  ....+|+.+.+.+..-.....    ..+...+.|+.+.
T Consensus       255 l~--~~----~~~~~l~~L~~L~l~~n~l~~~----~~-~--~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~  317 (347)
T 4fmz_A          255 IS--DI----NAVKDLTKLKMLNVGSNQISDI----SV-L--NNLSQLNSLFLNNNQLGNEDM----EVIGGLTNLTTLF  317 (347)
T ss_dssp             CC--CC----GGGTTCTTCCEEECCSSCCCCC----GG-G--GGCTTCSEEECCSSCCCGGGH----HHHHTCTTCSEEE
T ss_pred             cC--CC----hhHhcCCCcCEEEccCCccCCC----hh-h--cCCCCCCEEECcCCcCCCcCh----hHhhccccCCEEE
Confidence            22  21    2356788888888876532111    01 1  234678888888764332221    3456788999999


Q ss_pred             EEeec
Q 014317          391 IEPSR  395 (427)
Q Consensus       391 i~~~~  395 (427)
                      +..+.
T Consensus       318 L~~n~  322 (347)
T 4fmz_A          318 LSQNH  322 (347)
T ss_dssp             CCSSS
T ss_pred             ccCCc
Confidence            87665

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.68  E-value=7.9e-08  Score=97.07  Aligned_cols=210  Identities=17%  Similarity=0.148  Sum_probs=115.3

Q ss_pred             CCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEe---cCccccceEEEEecCCccEEE--E-ECCce
Q 014317          158 GIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVI---GSSIQLKYLEIQSCYLMEEIE--I-SAPSL  231 (427)
Q Consensus       158 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~---~~~~~L~~L~l~~c~~l~~~~--i-~~p~L  231 (427)
                      .+++|+.|++.++.+....-   ...+|.|+.|++.++.........   ..+++|+.|.+++|. +..+.  + ..++|
T Consensus       323 ~l~~L~~L~l~~n~~~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L  398 (570)
T 2z63_A          323 KLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQL  398 (570)
T ss_dssp             BCSSCCEEEEESCBSCCBCC---CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTC
T ss_pred             cccccCEEeCcCCccccccc---cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCc-cccccccccccCCC
Confidence            56677777776665433210   145777777777776543322111   145677777777665 33332  2 24777


Q ss_pred             eEEEEeeeeee-----eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEecccee--ecccccCCCCceeEE
Q 014317          232 LSFRYYGQAIK-----INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEV--YMQFSLFELPKLIDL  304 (427)
Q Consensus       232 ~~L~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~--~~~~~~~~~~~L~~L  304 (427)
                      ++|++.++...     ..+.+++.|+.+++..+..   .......+..+++|+.|.+++|.-.  ..+..+..+++|+.|
T Consensus       399 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L  475 (570)
T 2z63_A          399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT---RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL  475 (570)
T ss_dssp             CEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCC---EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred             CEEEccCCccccccchhhhhcCCCCCEEeCcCCcc---cccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEE
Confidence            77777765432     1345667777777766652   2223344567788888888874322  155666777788887


Q ss_pred             EEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEec--eecCccHHHHH-HHHHh
Q 014317          305 RLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHG--FLGRQFDVELA-QYLFQ  381 (427)
Q Consensus       305 ~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~--f~g~~~e~~~~-~~ll~  381 (427)
                      +++.+.-.  +.  .+..+..+++|++|+|+.+.-.......   +  ....+|+.+.+.+  +.+......+. .++-+
T Consensus       476 ~l~~n~l~--~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~--~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~  546 (570)
T 2z63_A          476 DLSQCQLE--QL--SPTAFNSLSSLQVLNMASNQLKSVPDGI---F--DRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK  546 (570)
T ss_dssp             ECTTSCCC--EE--CTTTTTTCTTCCEEECCSSCCSCCCTTT---T--TTCTTCCEEECCSSCBCCCTTTTHHHHHHHHH
T ss_pred             ECCCCccc--cC--ChhhhhcccCCCEEeCCCCcCCCCCHHH---h--hcccCCcEEEecCCcccCCCcchHHHHHHHHh
Confidence            77432111  11  0223456788888888755322111000   1  1245777777776  34555555555 44444


Q ss_pred             cc
Q 014317          382 NA  383 (427)
Q Consensus       382 ~a  383 (427)
                      +.
T Consensus       547 ~~  548 (570)
T 2z63_A          547 NS  548 (570)
T ss_dssp             TG
T ss_pred             cc
Confidence            43

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.67  E-value=3.2e-10  Score=109.14  Aligned_cols=231  Identities=16%  Similarity=0.120  Sum_probs=127.7

Q ss_pred             CCCCCCCcEEEEeeEEeC---h---h---hHHHHHhcCCccceeeeccCCCce----eE-EEecCccccceEEEEecCCc
Q 014317          156 LSGIKFLRCLHFKTVNVN---G---K---DIELFIQNCPLLDRLCVDHSKTLV----RL-RVIGSSIQLKYLEIQSCYLM  221 (427)
Q Consensus       156 ~~~~~~L~~L~L~~~~~~---~---~---~l~~ll~~cp~Le~L~l~~c~~~~----~l-~i~~~~~~L~~L~l~~c~~l  221 (427)
                      +..+++|++|+|.++.+.   +   .   .+...+..++.|+.|+|.++....    .+ ..-..+++|++|.+++|. +
T Consensus        56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l  134 (386)
T 2ca6_A           56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-L  134 (386)
T ss_dssp             TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-C
T ss_pred             HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-C
Confidence            457888999998887533   1   1   233445678999999998875332    01 011235788888888876 2


Q ss_pred             cEEE---E-EC-------------CceeEEEEeeeeee--------eeccCCcccceeeeeeccccc--cchhhcccccc
Q 014317          222 EEIE---I-SA-------------PSLLSFRYYGQAIK--------INIENVPQLVDVSIRGSHTFR--VTYFVGPIISC  274 (427)
Q Consensus       222 ~~~~---i-~~-------------p~L~~L~~~~~~~~--------~~~~~~~~L~~l~l~~~~~~~--~~~~~~~~~~~  274 (427)
                      ....   + .+             |+|++|.+.++...        ..+..++.|+.+.+..+....  +.......+..
T Consensus       135 ~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~  214 (386)
T 2ca6_A          135 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY  214 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG
T ss_pred             CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc
Confidence            2110   0 01             78888888766432        123456788888887766321  11122224567


Q ss_pred             CCCceEEEEeccceee------cccccCCCCceeEEEEEEEccCCCChHHHHHHHHh--CCCccEEEEEeccCCCCCCcc
Q 014317          275 FPQLKTLELDSCNEVY------MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKA--CPFLQKLILQLNDHGRRLGKK  346 (427)
Q Consensus       275 ~~~l~~L~l~~~~~~~------~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~--~p~L~~L~i~~~~~~~~~~~~  346 (427)
                      +++|+.|.|++| .+.      ++..+..+++|++|+|+.+.-.......+...+..  +|+|++|.|+.+.-.. .+. 
T Consensus       215 ~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~-~g~-  291 (386)
T 2ca6_A          215 CQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL-DAV-  291 (386)
T ss_dssp             CTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH-HHH-
T ss_pred             CCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH-HHH-
Confidence            888888888873 342      45556777888888874332221122233445544  7888888887543111 000 


Q ss_pred             cccCCCC---ccCCccEEEEeceecCccHHHHHHHHHhccccccceEEE
Q 014317          347 RQQFPKY---SHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIE  392 (427)
Q Consensus       347 ~~~~~~~---~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i~  392 (427)
                      .. ++..   ...+|+.+.+.+..-... ..++..+.+..+.++...+.
T Consensus       292 ~~-l~~~l~~~l~~L~~L~l~~N~l~~~-~~~~~~l~~~l~~~~~~~l~  338 (386)
T 2ca6_A          292 RT-LKTVIDEKMPDLLFLELNGNRFSEE-DDVVDEIREVFSTRGRGELD  338 (386)
T ss_dssp             HH-HHHHHHHHCTTCCEEECTTSBSCTT-SHHHHHHHHHHHHHTCCEEC
T ss_pred             HH-HHHHHHhcCCCceEEEccCCcCCcc-hhHHHHHHHHhhhcCcchhh
Confidence            00 1211   146788888776432211 12233444444555555443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.65  E-value=1.5e-08  Score=100.26  Aligned_cols=174  Identities=16%  Similarity=0.114  Sum_probs=93.8

Q ss_pred             CCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCCccEEEE----ECC
Q 014317          155 GLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYLMEEIEI----SAP  229 (427)
Q Consensus       155 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~~~i----~~p  229 (427)
                      .+.++++|++|+|.++.+..-. ...+..++.|+.|+|.++...... ..-..+++|++|.++++. +..+..    ..+
T Consensus        75 ~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~  152 (477)
T 2id5_A           75 AFNNLFNLRTLGLRSNRLKLIP-LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLN  152 (477)
T ss_dssp             TTTTCTTCCEEECCSSCCCSCC-TTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCT
T ss_pred             hhhCCccCCEEECCCCcCCccC-cccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCC
Confidence            4566777777777766544211 112455777777777766432211 001234677777776654 333321    136


Q ss_pred             ceeEEEEeeeeee----eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeEE
Q 014317          230 SLLSFRYYGQAIK----INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDL  304 (427)
Q Consensus       230 ~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L  304 (427)
                      +|++|++.++...    ..+.+++.|+.+.+..+....   .....+..+++|+.|++++|.... .+.......+|++|
T Consensus       153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  229 (477)
T 2id5_A          153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA---IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSL  229 (477)
T ss_dssp             TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE---ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEE
T ss_pred             CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE---eChhhcccCcccceeeCCCCccccccCcccccCccccEE
Confidence            7777777665322    124566777777776655322   222234567777777777654433 33333344467777


Q ss_pred             EEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317          305 RLRVTTPNRESLLGLTCIMKACPFLQKLILQLN  337 (427)
Q Consensus       305 ~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  337 (427)
                      +++.+.-.  ...  ...+..+++|+.|+++.+
T Consensus       230 ~l~~n~l~--~~~--~~~~~~l~~L~~L~Ls~n  258 (477)
T 2id5_A          230 SITHCNLT--AVP--YLAVRHLVYLRFLNLSYN  258 (477)
T ss_dssp             EEESSCCC--SCC--HHHHTTCTTCCEEECCSS
T ss_pred             ECcCCccc--ccC--HHHhcCccccCeeECCCC
Confidence            76443211  111  124566777777777654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.64  E-value=6.2e-08  Score=93.14  Aligned_cols=169  Identities=14%  Similarity=0.104  Sum_probs=78.3

Q ss_pred             CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEE----------
Q 014317          156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIE----------  225 (427)
Q Consensus       156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~----------  225 (427)
                      +..+++|++|+|.++.+..-. ...+..++.|+.|++.++..... .+ ..+++|+.|.++++. +..+.          
T Consensus       137 ~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~-~~-~~l~~L~~L~l~~n~-l~~~~~~~~L~~L~l  212 (390)
T 3o6n_A          137 FHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSNRLTHV-DL-SLIPSLFHANVSYNL-LSTLAIPIAVEELDA  212 (390)
T ss_dssp             TTTCTTCCEEECCSSCCCBCC-TTTTSSCTTCCEEECCSSCCSBC-CG-GGCTTCSEEECCSSC-CSEEECCSSCSEEEC
T ss_pred             hcCCCCCcEEECCCCccCccC-hhhccCCCCCCEEECCCCcCCcc-cc-ccccccceeeccccc-ccccCCCCcceEEEC
Confidence            466778888888776654311 11245677788888776643221 11 123555555555443 23221          


Q ss_pred             ---------EE-CCceeEEEEeeeeee--eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cc
Q 014317          226 ---------IS-APSLLSFRYYGQAIK--INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQ  292 (427)
Q Consensus       226 ---------i~-~p~L~~L~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~  292 (427)
                               .. .++|+.|++.++...  ..+..++.|+.+++..+..   .......+..+++|+.|.+++ ..+. .+
T Consensus       213 ~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~L~~-n~l~~~~  288 (390)
T 3o6n_A          213 SHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNEL---EKIMYHPFVKMQRLERLYISN-NRLVALN  288 (390)
T ss_dssp             CSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC---CEEESGGGTTCSSCCEEECCS-SCCCEEE
T ss_pred             CCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcC---CCcChhHccccccCCEEECCC-CcCcccC
Confidence                     11 134444444443211  1233445555555554442   111222334555666666655 2222 33


Q ss_pred             cccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317          293 FSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLN  337 (427)
Q Consensus       293 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  337 (427)
                      .....+++|++|+++.+.-.  .   +..-+..+++|+.|++..+
T Consensus       289 ~~~~~l~~L~~L~L~~n~l~--~---~~~~~~~l~~L~~L~L~~N  328 (390)
T 3o6n_A          289 LYGQPIPTLKVLDLSHNHLL--H---VERNQPQFDRLENLYLDHN  328 (390)
T ss_dssp             CSSSCCTTCCEEECCSSCCC--C---CGGGHHHHTTCSEEECCSS
T ss_pred             cccCCCCCCCEEECCCCcce--e---cCccccccCcCCEEECCCC
Confidence            33345556666655332111  1   1111234566666666543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.63  E-value=9.9e-08  Score=95.95  Aligned_cols=226  Identities=14%  Similarity=0.100  Sum_probs=133.4

Q ss_pred             CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCCccEEE---E-ECCceeEE
Q 014317          160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYLMEEIE---I-SAPSLLSF  234 (427)
Q Consensus       160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~~~---i-~~p~L~~L  234 (427)
                      ++|++|+|+++.+.+-.. ..+..++.|++|++.++...... ..-..+++|++|.++++. +..+.   + ..++|++|
T Consensus        26 ~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L  103 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGH-GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYL  103 (549)
T ss_dssp             TTCCEEECCSSCCCEECS-STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEE
T ss_pred             CCccEEECcCCccCccCh-hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcEE
Confidence            677777777765542110 11456777777777776432211 001234677777777664 33221   1 23678888


Q ss_pred             EEeeeee-----eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeEEEEEE
Q 014317          235 RYYGQAI-----KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLRV  308 (427)
Q Consensus       235 ~~~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~  308 (427)
                      +++++..     +..+.+++.|+.+++..+....  ......+..+++|+.|+++++.-.. .+..+..+++|++|.++.
T Consensus       104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  181 (549)
T 2z81_A          104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS--EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL  181 (549)
T ss_dssp             ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC--EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred             ECCCCcccccchhhhhhccCCccEEECCCCcccc--ccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEeccc
Confidence            7776532     2346778899999998765211  1112235678999999999843222 566778888999999865


Q ss_pred             EccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEeceecCccHHHHHHHHHhccccccc
Q 014317          309 TTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEK  388 (427)
Q Consensus       309 ~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~  388 (427)
                      +...  ...  ..++..+++|+.|+++.+........... . .....+|+.+.+.+..-.+....-....+.+.+.|+.
T Consensus       182 n~~~--~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~-~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~  255 (549)
T 2z81_A          182 SESA--FLL--EIFADILSSVRYLELRDTNLARFQFSPLP-V-DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE  255 (549)
T ss_dssp             SBST--THH--HHHHHSTTTBSEEEEESCBCTTCCCCCCS-S-CCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCE
T ss_pred             Cccc--ccc--hhhHhhcccccEEEccCCccccccccccc-h-hhhhhcccceeccccccchhHHHHHHHHhhhhccccc
Confidence            4321  221  23456799999999987643221100000 0 1235688888887754433333333344567788888


Q ss_pred             eEEEeec
Q 014317          389 LIIEPSR  395 (427)
Q Consensus       389 l~i~~~~  395 (427)
                      +.+..+.
T Consensus       256 l~l~~~~  262 (549)
T 2z81_A          256 VEFDDCT  262 (549)
T ss_dssp             EEEESCE
T ss_pred             ccccccc
Confidence            8887654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.63  E-value=1.3e-08  Score=96.20  Aligned_cols=211  Identities=14%  Similarity=0.147  Sum_probs=129.2

Q ss_pred             CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEE--EECCceeE
Q 014317          156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIE--ISAPSLLS  233 (427)
Q Consensus       156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~--i~~p~L~~  233 (427)
                      +..+++|++|+|.++.+.+-.   -+..++.|++|++.++....... ...+++|+.|.+++|.....+.  ...++|++
T Consensus        84 ~~~l~~L~~L~L~~n~i~~~~---~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~  159 (347)
T 4fmz_A           84 LSNLVKLTNLYIGTNKITDIS---ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNY  159 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCCG---GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCE
T ss_pred             hhcCCcCCEEEccCCcccCch---HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcE
Confidence            457788888888877665421   26678888888887775322111 2345778888887775433221  12478888


Q ss_pred             EEEeeeeeee--eccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceeecccccCCCCceeEEEEEEEcc
Q 014317          234 FRYYGQAIKI--NIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLRVTTP  311 (427)
Q Consensus       234 L~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  311 (427)
                      |.+.++....  .+..++.|+.+++..+....+    .. +..+++++.|.+.+ ..+.....+..+++|++|+++.+.-
T Consensus       160 L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~-~~~l~~L~~L~l~~-n~l~~~~~~~~~~~L~~L~l~~n~l  233 (347)
T 4fmz_A          160 LTVTESKVKDVTPIANLTDLYSLSLNYNQIEDI----SP-LASLTSLHYFTAYV-NQITDITPVANMTRLNSLKIGNNKI  233 (347)
T ss_dssp             EECCSSCCCCCGGGGGCTTCSEEECTTSCCCCC----GG-GGGCTTCCEEECCS-SCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             EEecCCCcCCchhhccCCCCCEEEccCCccccc----cc-ccCCCccceeeccc-CCCCCCchhhcCCcCCEEEccCCcc
Confidence            8877664321  256677888888876653321    11 46788888888887 3433112256778888888844322


Q ss_pred             CCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEeceecCccHHHHHHHHHhccccccceEE
Q 014317          312 NRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLII  391 (427)
Q Consensus       312 ~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i  391 (427)
                      .  ...   . +..+++|++|+++.+.-...    .. +  ....+|+.+.+.+..-..-      -.+...+.|+.+.+
T Consensus       234 ~--~~~---~-~~~l~~L~~L~l~~n~l~~~----~~-~--~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~L  294 (347)
T 4fmz_A          234 T--DLS---P-LANLSQLTWLEIGTNQISDI----NA-V--KDLTKLKMLNVGSNQISDI------SVLNNLSQLNSLFL  294 (347)
T ss_dssp             C--CCG---G-GTTCTTCCEEECCSSCCCCC----GG-G--TTCTTCCEEECCSSCCCCC------GGGGGCTTCSEEEC
T ss_pred             C--CCc---c-hhcCCCCCEEECCCCccCCC----hh-H--hcCCCcCEEEccCCccCCC------hhhcCCCCCCEEEC
Confidence            1  221   1 67889999999876532221    11 1  2346888888877542221      13578899999999


Q ss_pred             Eeec
Q 014317          392 EPSR  395 (427)
Q Consensus       392 ~~~~  395 (427)
                      ..+.
T Consensus       295 ~~n~  298 (347)
T 4fmz_A          295 NNNQ  298 (347)
T ss_dssp             CSSC
T ss_pred             cCCc
Confidence            8765

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.62  E-value=4.6e-09  Score=107.13  Aligned_cols=142  Identities=14%  Similarity=0.183  Sum_probs=60.5

Q ss_pred             CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEE------EECC
Q 014317          156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIE------ISAP  229 (427)
Q Consensus       156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~------i~~p  229 (427)
                      +..+++|++|++.++.+..  +..+  .+|.|+.|.+.++.......+. .+++|+.|.++++. +..+.      ...+
T Consensus       303 l~~~~~L~~L~l~~n~l~~--lp~~--~l~~L~~L~l~~n~~~~~~~~~-~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~  376 (606)
T 3vq2_A          303 VPKHFKWQSLSIIRCQLKQ--FPTL--DLPFLKSLTLTMNKGSISFKKV-ALPSLSYLDLSRNA-LSFSGCCSYSDLGTN  376 (606)
T ss_dssp             CCTTCCCSEEEEESCCCSS--CCCC--CCSSCCEEEEESCSSCEECCCC-CCTTCCEEECCSSC-EEEEEECCHHHHCCS
T ss_pred             ccccccCCEEEcccccCcc--cccC--CCCccceeeccCCcCccchhhc-cCCCCCEEECcCCc-cCCCcchhhhhccCC
Confidence            4445555555555555421  1111  4555555555555433322111 23555555555443 22221      0135


Q ss_pred             ceeEEEEeeeee---eeeccCCcccceeeeeeccccccchhhc-cccccCCCceEEEEeccceee-cccccCCCCceeEE
Q 014317          230 SLLSFRYYGQAI---KINIENVPQLVDVSIRGSHTFRVTYFVG-PIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDL  304 (427)
Q Consensus       230 ~L~~L~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~-~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L  304 (427)
                      +|++|++.++..   +..+.+++.|+.+.+..+....   ... ..+..+++|+.|++++|.-.. .+..+..+++|++|
T Consensus       377 ~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  453 (606)
T 3vq2_A          377 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKR---VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL  453 (606)
T ss_dssp             CCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEES---TTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred             cccEeECCCCccccchhhccCCCCCCeeECCCCccCC---ccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEE
Confidence            555555554421   1233445555555555443211   111 123345555555555422211 23333444455555


Q ss_pred             EE
Q 014317          305 RL  306 (427)
Q Consensus       305 ~l  306 (427)
                      ++
T Consensus       454 ~l  455 (606)
T 3vq2_A          454 KM  455 (606)
T ss_dssp             EC
T ss_pred             EC
Confidence            44

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.61  E-value=8.7e-09  Score=94.61  Aligned_cols=40  Identities=15%  Similarity=0.189  Sum_probs=20.0

Q ss_pred             CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCC
Q 014317          156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSK  196 (427)
Q Consensus       156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~  196 (427)
                      +..+++|++|+|.++.+..-. ...+..++.|+.|++.++.
T Consensus        52 ~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           52 FRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCT
T ss_pred             cccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCC
Confidence            345566666666655433210 0113445666666666554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.60  E-value=9.4e-09  Score=101.95  Aligned_cols=241  Identities=12%  Similarity=0.061  Sum_probs=150.6

Q ss_pred             ccHHHHHHHHhc--CCceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEeeEEeChhhHHHHHhcCCcc
Q 014317          110 SDITNWVYTVLG--KRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLL  187 (427)
Q Consensus       110 ~~~~~wl~~~~~--~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~L  187 (427)
                      ..+...+.....  ++++.|++......     .+|+         ..+..+++|+.|+|+++.+.+..-   +..+|.|
T Consensus        20 ~~l~~~l~~l~~~~~~L~~L~Ls~n~l~-----~~~~---------~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L   82 (487)
T 3oja_A           20 SSLKQALASLRQSAWNVKELDLSGNPLS-----QISA---------ADLAPFTKLELLNLSSNVLYETLD---LESLSTL   82 (487)
T ss_dssp             TTHHHHHHTTSTTGGGCCEEECCSSCCC-----CCCG---------GGGTTCTTCCEEECTTSCCEEEEE---CTTCTTC
T ss_pred             hhhHHHHHHhcccCCCccEEEeeCCcCC-----CCCH---------HHHhCCCCCCEEEeeCCCCCCCcc---cccCCCC
Confidence            345555544322  27888888765321     2222         235688999999999887653211   7789999


Q ss_pred             ceeeeccCCCceeEEEecCccccceEEEEecCCccEEEEE-CCceeEEEEeeeee----eeeccCCcccceeeeeecccc
Q 014317          188 DRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEIS-APSLLSFRYYGQAI----KINIENVPQLVDVSIRGSHTF  262 (427)
Q Consensus       188 e~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~-~p~L~~L~~~~~~~----~~~~~~~~~L~~l~l~~~~~~  262 (427)
                      +.|+|.+|. +..+.   ..++|+.|.++++. +..+... .|+|+.|++.++..    +..+.+++.|+.++++.+...
T Consensus        83 ~~L~Ls~N~-l~~l~---~~~~L~~L~L~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  157 (487)
T 3oja_A           83 RTLDLNNNY-VQELL---VGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID  157 (487)
T ss_dssp             CEEECCSSE-EEEEE---ECTTCCEEECCSSC-CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC
T ss_pred             CEEEecCCc-CCCCC---CCCCcCEEECcCCc-CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC
Confidence            999999884 22222   22789999999887 5544443 48999999987743    334567889999999877643


Q ss_pred             ccchhhccccccCCCceEEEEeccceeecccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCC
Q 014317          263 RVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRR  342 (427)
Q Consensus       263 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~  342 (427)
                      .  .....+...+++|+.|+|++ +.+........+++|++|+|+.+.-..     ++.-+..+++|+.|+++.+.... 
T Consensus       158 ~--~~~~~l~~~l~~L~~L~Ls~-N~l~~~~~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~l~~L~~L~Ls~N~l~~-  228 (487)
T 3oja_A          158 T--VNFAELAASSDTLEHLNLQY-NFIYDVKGQVVFAKLKTLDLSSNKLAF-----MGPEFQSAAGVTWISLRNNKLVL-  228 (487)
T ss_dssp             E--EEGGGGGGGTTTCCEEECTT-SCCCEEECCCCCTTCCEEECCSSCCCE-----ECGGGGGGTTCSEEECTTSCCCE-
T ss_pred             C--cChHHHhhhCCcccEEecCC-CccccccccccCCCCCEEECCCCCCCC-----CCHhHcCCCCccEEEecCCcCcc-
Confidence            2  12233445789999999998 445422223458899999985442221     11225678999999997654221 


Q ss_pred             CCcccccCCC--CccCCccEEEEeceecCccHHHHHHHHHhccccccceEE
Q 014317          343 LGKKRQQFPK--YSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLII  391 (427)
Q Consensus       343 ~~~~~~~~~~--~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i  391 (427)
                             +|.  ....+|+.+.+.+-...+..   ....+...+.|+.+.+
T Consensus       229 -------lp~~l~~l~~L~~L~l~~N~l~c~~---~~~~~~~l~~L~~l~~  269 (487)
T 3oja_A          229 -------IEKALRFSQNLEHFDLRGNGFHCGT---LRDFFSKNQRVQTVAK  269 (487)
T ss_dssp             -------ECTTCCCCTTCCEEECTTCCBCHHH---HHHHHTTCHHHHHHHH
T ss_pred             -------cchhhccCCCCCEEEcCCCCCcCcc---hHHHHHhCCCCcEEec
Confidence                   121  12457888887765444222   2244455555555544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.58  E-value=5.5e-09  Score=98.25  Aligned_cols=167  Identities=19%  Similarity=0.225  Sum_probs=93.3

Q ss_pred             CCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCcee--E-EEecCccccceEEEEecCCccEE-----EEEC
Q 014317          157 SGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVR--L-RVIGSSIQLKYLEIQSCYLMEEI-----EISA  228 (427)
Q Consensus       157 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~--l-~i~~~~~~L~~L~l~~c~~l~~~-----~i~~  228 (427)
                      ..+++|++|+|.++.+.+..... ++.||+|++|++.+|..+..  + .+...+++|++|.+++|..+...     .-..
T Consensus       115 ~~~~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l  193 (336)
T 2ast_B          115 SQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  193 (336)
T ss_dssp             TTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             hhCCCCCEEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence            45677777777777665544433 45577777777777743332  1 11123567777777776333321     1124


Q ss_pred             C-ceeEEEEeeeee-------eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCC
Q 014317          229 P-SLLSFRYYGQAI-------KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFEL  298 (427)
Q Consensus       229 p-~L~~L~~~~~~~-------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~  298 (427)
                      | +|++|++.++..       +..+..+++|+.+++..+...  .......+..+++|+.|++++|..+.  ....+..+
T Consensus       194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~  271 (336)
T 2ast_B          194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML--KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI  271 (336)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTC--CGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC
T ss_pred             ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcC--CHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcC
Confidence            6 777777766521       223456777888887766521  11122234567888888888765332  12245667


Q ss_pred             CceeEEEEEEEccCCCChHHHHHHHHhCCCcc
Q 014317          299 PKLIDLRLRVTTPNRESLLGLTCIMKACPFLQ  330 (427)
Q Consensus       299 ~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~  330 (427)
                      ++|++|+++.+    ....++..+.+.+|.|+
T Consensus       272 ~~L~~L~l~~~----i~~~~~~~l~~~l~~L~  299 (336)
T 2ast_B          272 PTLKTLQVFGI----VPDGTLQLLKEALPHLQ  299 (336)
T ss_dssp             TTCCEEECTTS----SCTTCHHHHHHHSTTSE
T ss_pred             CCCCEEeccCc----cCHHHHHHHHhhCcceE
Confidence            88888887433    12222334445566665

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.58  E-value=7.8e-08  Score=97.87  Aligned_cols=189  Identities=15%  Similarity=0.105  Sum_probs=105.0

Q ss_pred             CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceE-------------------EEE
Q 014317          156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYL-------------------EIQ  216 (427)
Q Consensus       156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L-------------------~l~  216 (427)
                      +..+++|++|+|.++.+..-. ...+..++.|+.|++.++.... +.+ ..+++|+.|                   .++
T Consensus       143 ~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~-~~~-~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls  219 (597)
T 3oja_B          143 FHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSNRLTH-VDL-SLIPSLFHANVSYNLLSTLAIPIAVEELDAS  219 (597)
T ss_dssp             TTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECTTSCCSB-CCG-GGCTTCSEEECCSSCCSEEECCTTCSEEECC
T ss_pred             hccCCCCCEEEeeCCcCCCCC-hhhhhcCCcCcEEECcCCCCCC-cCh-hhhhhhhhhhcccCccccccCCchhheeecc
Confidence            467788888888877654321 1124567788888887664221 111 122444444                   444


Q ss_pred             ecCCccEEEEE-CCceeEEEEeeeee--eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cc
Q 014317          217 SCYLMEEIEIS-APSLLSFRYYGQAI--KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQ  292 (427)
Q Consensus       217 ~c~~l~~~~i~-~p~L~~L~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~  292 (427)
                      ++. +..+... .++|+.|++.++..  ...+..++.|+.+++..+...   ......+..+++|+.|.|++ +.+. ++
T Consensus       220 ~n~-l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~Ls~-N~l~~l~  294 (597)
T 3oja_B          220 HNS-INVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELE---KIMYHPFVKMQRLERLYISN-NRLVALN  294 (597)
T ss_dssp             SSC-CCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC---EEESGGGTTCSSCCEEECTT-SCCCEEE
T ss_pred             CCc-ccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccC---CCCHHHhcCccCCCEEECCC-CCCCCCC
Confidence            433 2222221 24666666655532  123456777777777766532   22333456778888888887 3433 55


Q ss_pred             cccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEec
Q 014317          293 FSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHG  365 (427)
Q Consensus       293 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~  365 (427)
                      .....+++|+.|+|+.+.-.  .   ++.-+..+|+|+.|++..+....        .+.....+|+.+.+.+
T Consensus       295 ~~~~~l~~L~~L~Ls~N~l~--~---i~~~~~~l~~L~~L~L~~N~l~~--------~~~~~~~~L~~L~l~~  354 (597)
T 3oja_B          295 LYGQPIPTLKVLDLSHNHLL--H---VERNQPQFDRLENLYLDHNSIVT--------LKLSTHHTLKNLTLSH  354 (597)
T ss_dssp             CSSSCCTTCCEEECCSSCCC--C---CGGGHHHHTTCSEEECCSSCCCC--------CCCCTTCCCSEEECCS
T ss_pred             cccccCCCCcEEECCCCCCC--c---cCcccccCCCCCEEECCCCCCCC--------cChhhcCCCCEEEeeC
Confidence            55566788888888543222  1   22223567888888887653221        1222345677777665

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.56  E-value=2.6e-08  Score=91.45  Aligned_cols=208  Identities=12%  Similarity=0.056  Sum_probs=129.5

Q ss_pred             CCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEE--EecCccccceEEEEecCCccEEEE----ECCce
Q 014317          158 GIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLR--VIGSSIQLKYLEIQSCYLMEEIEI----SAPSL  231 (427)
Q Consensus       158 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~--i~~~~~~L~~L~l~~c~~l~~~~i----~~p~L  231 (427)
                      ..++|++|+|.+..+..-.. ..+..++.|+.|++.++... .+.  .-..+++|++|.++++..+..+..    ..++|
T Consensus        30 ~~~~l~~L~l~~n~i~~~~~-~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L  107 (285)
T 1ozn_A           30 IPAASQRIFLHGNRISHVPA-ASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL  107 (285)
T ss_dssp             CCTTCSEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred             CCCCceEEEeeCCcCCccCH-HHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCC
Confidence            35799999999877654211 12577999999999987532 221  112458899999998864444421    24899


Q ss_pred             eEEEEeeeeee----eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cc-cccCCCCceeEEE
Q 014317          232 LSFRYYGQAIK----INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQ-FSLFELPKLIDLR  305 (427)
Q Consensus       232 ~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~-~~~~~~~~L~~L~  305 (427)
                      ++|++.++...    ..+.+++.|+.+.+..+....   .....+..+++|+.|++++ +.+. .+ ..+..+++|++|+
T Consensus       108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~  183 (285)
T 1ozn_A          108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA---LPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLL  183 (285)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEE
T ss_pred             CEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc---cCHhHhccCCCccEEECCC-CcccccCHHHhcCccccCEEE
Confidence            99998876432    235678889999988776322   2233456789999999997 4444 33 3467788899988


Q ss_pred             EEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEece--ecCccHHHHHHHHH
Q 014317          306 LRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGF--LGRQFDVELAQYLF  380 (427)
Q Consensus       306 l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f--~g~~~e~~~~~~ll  380 (427)
                      ++.+.-....    ...+..+++|+.|++..+.-.......   +  ....+|+.+.+.+-  ........+.+++-
T Consensus       184 l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~---~--~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~  251 (285)
T 1ozn_A          184 LHQNRVAHVH----PHAFRDLGRLMTLYLFANNLSALPTEA---L--APLRALQYLRLNDNPWVCDCRARPLWAWLQ  251 (285)
T ss_dssp             CCSSCCCEEC----TTTTTTCTTCCEEECCSSCCSCCCHHH---H--TTCTTCCEEECCSSCEECSGGGHHHHHHHH
T ss_pred             CCCCcccccC----HhHccCcccccEeeCCCCcCCcCCHHH---c--ccCcccCEEeccCCCccCCCCcHHHHHHHH
Confidence            8543221111    233467899999999765322211110   1  13467888888763  34444444444443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.55  E-value=4.5e-09  Score=103.36  Aligned_cols=281  Identities=14%  Similarity=0.152  Sum_probs=150.7

Q ss_pred             eeEEEEEEecCCCCCccHHHHHH-HHhcCCceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEeeEEeC
Q 014317           95 INEFKVRFDLCDFHQSDITNWVY-TVLGKRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVN  173 (427)
Q Consensus        95 l~~l~l~~~~~~~~~~~~~~wl~-~~~~~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~  173 (427)
                      ++.+.+...  ..   .-..|.. ....++++.|.+..+.........+|          ..+..+++|++|+|+++.+.
T Consensus         5 l~~L~Ls~~--~l---~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~----------~~l~~~~~L~~L~Ls~n~l~   69 (461)
T 1z7x_W            5 IQSLDIQCE--EL---SDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS----------SALRVNPALAELNLRSNELG   69 (461)
T ss_dssp             EEEEEEESC--CC---CHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHH----------HHHHTCTTCCEEECTTCCCH
T ss_pred             ceehhhhhc--cc---CchhHHHHHhhcCCccEEEccCCCCCHHHHHHHH----------HHHHhCCCcCEEeCCCCcCC
Confidence            566666432  11   1223444 22346899999987642211001222          22346789999999998888


Q ss_pred             hhhHHHHHhcCC----ccceeeeccCCCce----e-EEEecCccccceEEEEecCCccEEEE---------ECCceeEEE
Q 014317          174 GKDIELFIQNCP----LLDRLCVDHSKTLV----R-LRVIGSSIQLKYLEIQSCYLMEEIEI---------SAPSLLSFR  235 (427)
Q Consensus       174 ~~~l~~ll~~cp----~Le~L~l~~c~~~~----~-l~i~~~~~~L~~L~l~~c~~l~~~~i---------~~p~L~~L~  235 (427)
                      +..+..+...++    .|++|++.+|....    . ...-..+++|++|.++++. +....+         ..++|++|+
T Consensus        70 ~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~  148 (461)
T 1z7x_W           70 DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQ  148 (461)
T ss_dssp             HHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             hHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEE
Confidence            777777777776    69999998886331    0 0111245788888888776 321100         124688888


Q ss_pred             Eeeeeeee--------eccCCcccceeeeeeccccc--cchhhccccccCCCceEEEEeccceee------cccccCCCC
Q 014317          236 YYGQAIKI--------NIENVPQLVDVSIRGSHTFR--VTYFVGPIISCFPQLKTLELDSCNEVY------MQFSLFELP  299 (427)
Q Consensus       236 ~~~~~~~~--------~~~~~~~L~~l~l~~~~~~~--~~~~~~~~~~~~~~l~~L~l~~~~~~~------~~~~~~~~~  299 (427)
                      +.++....        .+..++.|+.+++..+....  .......+....++++.|++++| .+.      ++..+..++
T Consensus       149 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~  227 (461)
T 1z7x_W          149 LEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKA  227 (461)
T ss_dssp             CTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCT
T ss_pred             CCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCC
Confidence            87663321        23346778888887665321  01111112234568888888874 332      234445667


Q ss_pred             ceeEEEEEEEccCCCChHHHH-HHHHhCCCccEEEEEeccCCCCCCcccccCCCC--ccCCccEEEEeceecCc-cHHHH
Q 014317          300 KLIDLRLRVTTPNRESLLGLT-CIMKACPFLQKLILQLNDHGRRLGKKRQQFPKY--SHQHLKVVELHGFLGRQ-FDVEL  375 (427)
Q Consensus       300 ~L~~L~l~~~~~~~~~~~~l~-~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~--~~~~L~~v~i~~f~g~~-~e~~~  375 (427)
                      +|++|+++.+.-.......+. .+...+++|++|+++.+.-.. .+. .. ++..  ...+|+.+.+.+-.-.+ ....+
T Consensus       228 ~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~-~~~-~~-l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l  304 (461)
T 1z7x_W          228 SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA-KGC-GD-LCRVLRAKESLKELSLAGNELGDEGARLL  304 (461)
T ss_dssp             TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH-HHH-HH-HHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred             CccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCH-HHH-HH-HHHHHhhCCCcceEECCCCCCchHHHHHH
Confidence            888887743311110111111 122247888888886542111 000 00 1110  14578888776543221 22234


Q ss_pred             HHHHHhccccccceEEEeec
Q 014317          376 AQYLFQNATMLEKLIIEPSR  395 (427)
Q Consensus       376 ~~~ll~~a~~L~~l~i~~~~  395 (427)
                      ...+..+.+.|+.+.+..+.
T Consensus       305 ~~~l~~~~~~L~~L~L~~n~  324 (461)
T 1z7x_W          305 CETLLEPGCQLESLWVKSCS  324 (461)
T ss_dssp             HHHHTSTTCCCCEEECTTSC
T ss_pred             HHHhccCCccceeeEcCCCC
Confidence            44444555788888887665

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.54  E-value=8.6e-08  Score=88.86  Aligned_cols=218  Identities=15%  Similarity=0.087  Sum_probs=139.2

Q ss_pred             CCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEe---cCccccceEEEEecCCccEEEE---ECCcee
Q 014317          159 IKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVI---GSSIQLKYLEIQSCYLMEEIEI---SAPSLL  232 (427)
Q Consensus       159 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~---~~~~~L~~L~l~~c~~l~~~~i---~~p~L~  232 (427)
                      .++|++|+|.++.+..- -..++..++.|+.|++.++.....-.+.   ..+++|+.|.++++. +..+..   ..++|+
T Consensus        27 ~~~l~~L~L~~n~l~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~  104 (306)
T 2z66_A           27 PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLE  104 (306)
T ss_dssp             CTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCC
T ss_pred             CCCCCEEECCCCccCcc-CHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCC
Confidence            47999999999876531 1123578999999999988643221111   145899999999876 444432   358999


Q ss_pred             EEEEeeeeeee-----eccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee---cccccCCCCceeEE
Q 014317          233 SFRYYGQAIKI-----NIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY---MQFSLFELPKLIDL  304 (427)
Q Consensus       233 ~L~~~~~~~~~-----~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~---~~~~~~~~~~L~~L  304 (427)
                      +|++.+.....     .+..++.|+.+.+..+..   .......+..+++|+.|.+++ ..+.   .+..+..+++|++|
T Consensus       105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L  180 (306)
T 2z66_A          105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT---RVAFNGIFNGLSSLEVLKMAG-NSFQENFLPDIFTELRNLTFL  180 (306)
T ss_dssp             EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCC---EECSTTTTTTCTTCCEEECTT-CEEGGGEECSCCTTCTTCCEE
T ss_pred             EEECCCCcccccccchhhhhccCCCEEECCCCcC---CccchhhcccCcCCCEEECCC-CccccccchhHHhhCcCCCEE
Confidence            99998775432     356788999999987663   223344567889999999998 4443   56677888999999


Q ss_pred             EEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEeceecCccHHHHHHHHHhcc-
Q 014317          305 RLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNA-  383 (427)
Q Consensus       305 ~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a-  383 (427)
                      +++.+.-..  .  ....+..+++|++|+++.+.-.......   +  ....+|+.+.+.+-.-.....    ..+... 
T Consensus       181 ~Ls~n~l~~--~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~---~--~~l~~L~~L~L~~N~l~~~~~----~~~~~~~  247 (306)
T 2z66_A          181 DLSQCQLEQ--L--SPTAFNSLSSLQVLNMSHNNFFSLDTFP---Y--KCLNSLQVLDYSLNHIMTSKK----QELQHFP  247 (306)
T ss_dssp             ECTTSCCCE--E--CTTTTTTCTTCCEEECTTSCCSBCCSGG---G--TTCTTCCEEECTTSCCCBCSS----SSCCCCC
T ss_pred             ECCCCCcCC--c--CHHHhcCCCCCCEEECCCCccCccChhh---c--cCcccCCEeECCCCCCcccCH----HHHHhhh
Confidence            984332111  1  1234567899999999765422211110   1  134688888887643211100    113344 


Q ss_pred             ccccceEEEeec
Q 014317          384 TMLEKLIIEPSR  395 (427)
Q Consensus       384 ~~L~~l~i~~~~  395 (427)
                      +.|+.+.+....
T Consensus       248 ~~L~~L~L~~N~  259 (306)
T 2z66_A          248 SSLAFLNLTQND  259 (306)
T ss_dssp             TTCCEEECTTCC
T ss_pred             ccCCEEEccCCC
Confidence            489998885443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.53  E-value=4.9e-09  Score=103.11  Aligned_cols=228  Identities=14%  Similarity=0.099  Sum_probs=132.2

Q ss_pred             eeEEEEEEecCCCCCccHHHHHHHHh--cCCceEEEEEecCCCCCccccccccccccccCCCCCC-CCCCCcEEEEeeEE
Q 014317           95 INEFKVRFDLCDFHQSDITNWVYTVL--GKRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLS-GIKFLRCLHFKTVN  171 (427)
Q Consensus        95 l~~l~l~~~~~~~~~~~~~~wl~~~~--~~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~-~~~~L~~L~L~~~~  171 (427)
                      ++.+.+...  ........ .+..+.  .+++++|++.......    .-+..++.      .+. ..++|++|+|.++.
T Consensus        30 L~~L~L~~~--~l~~~~~~-~l~~~l~~~~~L~~L~Ls~n~l~~----~~~~~l~~------~l~~~~~~L~~L~L~~n~   96 (461)
T 1z7x_W           30 CQVVRLDDC--GLTEARCK-DISSALRVNPALAELNLRSNELGD----VGVHCVLQ------GLQTPSCKIQKLSLQNCC   96 (461)
T ss_dssp             CSEEEEESS--CCCHHHHH-HHHHHHHTCTTCCEEECTTCCCHH----HHHHHHHH------TTCSTTCCCCEEECTTSC
T ss_pred             ccEEEccCC--CCCHHHHH-HHHHHHHhCCCcCEEeCCCCcCCh----HHHHHHHH------HHhhCCCceeEEEccCCC
Confidence            888888643  22211122 222222  2589999986542110    11111111      011 11279999999999


Q ss_pred             eChh---hHHHHHhcCCccceeeeccCCCcee-E-EEe----cCccccceEEEEecCCccEE-----E---EECCceeEE
Q 014317          172 VNGK---DIELFIQNCPLLDRLCVDHSKTLVR-L-RVI----GSSIQLKYLEIQSCYLMEEI-----E---ISAPSLLSF  234 (427)
Q Consensus       172 ~~~~---~l~~ll~~cp~Le~L~l~~c~~~~~-l-~i~----~~~~~L~~L~l~~c~~l~~~-----~---i~~p~L~~L  234 (427)
                      +.+.   .+...+..+|.|++|++.++...+. . .+.    ...++|++|.+++|. +...     .   -..|+|++|
T Consensus        97 i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L  175 (461)
T 1z7x_W           97 LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKEL  175 (461)
T ss_dssp             CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEE
T ss_pred             CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEE
Confidence            8874   4666678899999999998863211 0 111    123579999998885 2221     0   124899999


Q ss_pred             EEeeeeeee----ec-----cCCcccceeeeeecccccc-chhhccccccCCCceEEEEeccceee------c-ccccCC
Q 014317          235 RYYGQAIKI----NI-----ENVPQLVDVSIRGSHTFRV-TYFVGPIISCFPQLKTLELDSCNEVY------M-QFSLFE  297 (427)
Q Consensus       235 ~~~~~~~~~----~~-----~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~~~~l~~L~l~~~~~~~------~-~~~~~~  297 (427)
                      +++++....    .+     ...+.|+.+++..+..... ...+...+..+++|+.|+++++ .+.      + +.....
T Consensus       176 ~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~  254 (461)
T 1z7x_W          176 TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHP  254 (461)
T ss_dssp             ECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTST
T ss_pred             ECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcC
Confidence            988764321    01     1345888888887763321 1123444567889999999874 333      1 122235


Q ss_pred             CCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317          298 LPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLN  337 (427)
Q Consensus       298 ~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  337 (427)
                      +++|++|+++.+.-.......+...+..+++|++|+++.+
T Consensus       255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  294 (461)
T 1z7x_W          255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN  294 (461)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred             CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence            7788888884332221122335666777888998888754

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.52  E-value=4.8e-08  Score=95.54  Aligned_cols=195  Identities=16%  Similarity=0.117  Sum_probs=121.9

Q ss_pred             CCCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCCccEEEE----EC
Q 014317          154 RGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYLMEEIEI----SA  228 (427)
Q Consensus       154 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~~~i----~~  228 (427)
                      ..+..+++|+.|+|.++.+..-.. ..+..+++|+.|+|.++...... ..-..+++|+.|.++++. +..+..    ..
T Consensus        82 ~~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l  159 (440)
T 3zyj_A           82 NSFKHLRHLEILQLSRNHIRTIEI-GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRI  159 (440)
T ss_dssp             TTTSSCSSCCEEECCSSCCCEECG-GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTC
T ss_pred             HHhhCCCCCCEEECCCCcCCccCh-hhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhC
Confidence            346788999999999876543211 12567899999999887432210 011235788999888776 454432    24


Q ss_pred             CceeEEEEeeee----e-eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCCCce
Q 014317          229 PSLLSFRYYGQA----I-KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKL  301 (427)
Q Consensus       229 p~L~~L~~~~~~----~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L  301 (427)
                      ++|++|++.+..    . ...+.+++.|+.+++..+....+    . -+..+++|+.|+|++ +.+.  .+..+..+++|
T Consensus       160 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~----~-~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L  233 (440)
T 3zyj_A          160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI----P-NLTPLIKLDELDLSG-NHLSAIRPGSFQGLMHL  233 (440)
T ss_dssp             TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC----C-CCTTCSSCCEEECTT-SCCCEECTTTTTTCTTC
T ss_pred             cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc----c-ccCCCcccCEEECCC-CccCccChhhhccCccC
Confidence            888888887631    1 12456788899988887764321    1 246788999999998 4444  35667788889


Q ss_pred             eEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEec
Q 014317          302 IDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHG  365 (427)
Q Consensus       302 ~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~  365 (427)
                      ++|.++.+.-....    ...+..+++|+.|+|+.+.........   +  ....+|+.+.+.+
T Consensus       234 ~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~~~---~--~~l~~L~~L~L~~  288 (440)
T 3zyj_A          234 QKLWMIQSQIQVIE----RNAFDNLQSLVEINLAHNNLTLLPHDL---F--TPLHHLERIHLHH  288 (440)
T ss_dssp             CEEECTTCCCCEEC----TTSSTTCTTCCEEECTTSCCCCCCTTT---T--SSCTTCCEEECCS
T ss_pred             CEEECCCCceeEEC----hhhhcCCCCCCEEECCCCCCCccChhH---h--ccccCCCEEEcCC
Confidence            99888433211111    123467899999999765322211110   1  1246788888876

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.52  E-value=1.3e-08  Score=106.67  Aligned_cols=222  Identities=17%  Similarity=0.172  Sum_probs=104.7

Q ss_pred             CCCCCCC-CCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEE--ecCccccceEEEEecCCcc-EEE--
Q 014317          152 SGRGLSG-IKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRV--IGSSIQLKYLEIQSCYLME-EIE--  225 (427)
Q Consensus       152 lp~~~~~-~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~-~~~--  225 (427)
                      +|..+.. +++|++|+|.++.+.+. +...+..++.|+.|++.+|...+.+..  -..+++|+.|.+++|. +. .+.  
T Consensus       285 ip~~~~~~~~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~-l~~~~p~~  362 (768)
T 3rgz_A          285 IPDFLSGACDTLTGLDLSGNHFYGA-VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE-FSGELPES  362 (768)
T ss_dssp             CCCCSCTTCTTCSEEECCSSEEEEC-CCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE-EEECCCTT
T ss_pred             cCHHHHhhcCcCCEEECcCCcCCCc-cchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc-cCccccHH
Confidence            4554444 37777777777665421 111245667777777766643221111  1123556666665543 11 000  


Q ss_pred             E-E---------------------------CCceeEEEEeeeeee----eeccCCcccceeeeeeccccccchhhccccc
Q 014317          226 I-S---------------------------APSLLSFRYYGQAIK----INIENVPQLVDVSIRGSHTFRVTYFVGPIIS  273 (427)
Q Consensus       226 i-~---------------------------~p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~  273 (427)
                      + .                           .++|++|++.++...    ..+.+++.|+.+++..+..   .......+.
T Consensus       363 l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l---~~~~p~~l~  439 (768)
T 3rgz_A          363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL---SGTIPSSLG  439 (768)
T ss_dssp             HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEE---ESCCCGGGG
T ss_pred             HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcc---cCcccHHHh
Confidence            0 0                           234445544443221    1234445555555554431   112223334


Q ss_pred             cCCCceEEEEeccceee-cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCC
Q 014317          274 CFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPK  352 (427)
Q Consensus       274 ~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~  352 (427)
                      .+++|+.|.+++|.-.. .+..+..+++|++|+++.+.-.. .   ++..+..+++|+.|++..+.....       .|.
T Consensus       440 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~---~p~~l~~l~~L~~L~L~~N~l~~~-------~p~  508 (768)
T 3rgz_A          440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG-E---IPSGLSNCTNLNWISLSNNRLTGE-------IPK  508 (768)
T ss_dssp             GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS-C---CCGGGGGCTTCCEEECCSSCCCSC-------CCG
T ss_pred             cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC-c---CCHHHhcCCCCCEEEccCCccCCc-------CCh
Confidence            55666666666532221 44445555666666664322111 0   122345667777777655432111       111


Q ss_pred             --CccCCccEEEEecee--cCccHHHHHHHHHhccccccceEEEeec
Q 014317          353 --YSHQHLKVVELHGFL--GRQFDVELAQYLFQNATMLEKLIIEPSR  395 (427)
Q Consensus       353 --~~~~~L~~v~i~~f~--g~~~e~~~~~~ll~~a~~L~~l~i~~~~  395 (427)
                        ....+|+.+.+.+..  |.-.      .-+.+++.|+.+.+..+.
T Consensus       509 ~~~~l~~L~~L~L~~N~l~~~~p------~~l~~l~~L~~L~Ls~N~  549 (768)
T 3rgz_A          509 WIGRLENLAILKLSNNSFSGNIP------AELGDCRSLIWLDLNTNL  549 (768)
T ss_dssp             GGGGCTTCCEEECCSSCCEEECC------GGGGGCTTCCEEECCSSE
T ss_pred             HHhcCCCCCEEECCCCcccCcCC------HHHcCCCCCCEEECCCCc
Confidence              134577777776542  2211      224577888888876443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.51  E-value=1.3e-07  Score=84.26  Aligned_cols=189  Identities=16%  Similarity=0.115  Sum_probs=110.4

Q ss_pred             CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEE--ecCccccceEEEEecCCccEEE---E-ECCceeE
Q 014317          160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRV--IGSSIQLKYLEIQSCYLMEEIE---I-SAPSLLS  233 (427)
Q Consensus       160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~~~~---i-~~p~L~~  233 (427)
                      ++|++|+|.+..+..-.- ..+..++.|+.|++.++..+..+.-  -..+++|++|.+++|..+..+.   + ..++|++
T Consensus        31 ~~l~~L~l~~n~l~~i~~-~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPS-HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TTCCEEEEESCCCSEECT-TTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CcccEEEEeCCcceEECH-HHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            478888888776543110 1255688888888887764433321  1245788888888755566553   1 3478888


Q ss_pred             EEEeeeeeee--eccCCcccc---eeeeeec-cccccchhhccccccCCCce-EEEEeccceee-cccccCCCCceeEEE
Q 014317          234 FRYYGQAIKI--NIENVPQLV---DVSIRGS-HTFRVTYFVGPIISCFPQLK-TLELDSCNEVY-MQFSLFELPKLIDLR  305 (427)
Q Consensus       234 L~~~~~~~~~--~~~~~~~L~---~l~l~~~-~~~~~~~~~~~~~~~~~~l~-~L~l~~~~~~~-~~~~~~~~~~L~~L~  305 (427)
                      |++.++....  .+..++.|+   .+++..+ ..   .......+..+++++ .|++++ +.+. ++......++|++|.
T Consensus       110 L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l---~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~~~~~~~L~~L~  185 (239)
T 2xwt_C          110 LGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYM---TSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAFNGTKLDAVY  185 (239)
T ss_dssp             EEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTC---CEECTTTTTTTBSSEEEEECCS-CCCCEECTTTTTTCEEEEEE
T ss_pred             EeCCCCCCccccccccccccccccEEECCCCcch---hhcCcccccchhcceeEEEcCC-CCCcccCHhhcCCCCCCEEE
Confidence            8887763211  145566666   7777766 42   222223356788899 999987 4444 444333336788888


Q ss_pred             EEEEc-cCCCChHHHHHHHHhC-CCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEec
Q 014317          306 LRVTT-PNRESLLGLTCIMKAC-PFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHG  365 (427)
Q Consensus       306 l~~~~-~~~~~~~~l~~ll~~~-p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~  365 (427)
                      ++.+. -.  ...  ...+..+ ++|+.|+++.+.-.       . +|...+.+|+.+.+.+
T Consensus       186 L~~n~~l~--~i~--~~~~~~l~~~L~~L~l~~N~l~-------~-l~~~~~~~L~~L~l~~  235 (239)
T 2xwt_C          186 LNKNKYLT--VID--KDAFGGVYSGPSLLDVSQTSVT-------A-LPSKGLEHLKELIARN  235 (239)
T ss_dssp             CTTCTTCC--EEC--TTTTTTCSBCCSEEECTTCCCC-------C-CCCTTCTTCSEEECTT
T ss_pred             cCCCCCcc--cCC--HHHhhccccCCcEEECCCCccc-------c-CChhHhccCceeeccC
Confidence            74331 11  110  1234567 89999988654321       1 3333566777776654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.51  E-value=4.8e-08  Score=96.28  Aligned_cols=35  Identities=14%  Similarity=0.085  Sum_probs=18.8

Q ss_pred             cCCccEEEEeceecCccHHHHHHHHHhccccccceEEEeec
Q 014317          355 HQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIEPSR  395 (427)
Q Consensus       355 ~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i~~~~  395 (427)
                      ..+|+.+.+.+..-.... .     +...+.|+++.+..+.
T Consensus       308 l~~L~~L~L~~n~l~~~~-~-----~~~l~~L~~L~l~~n~  342 (466)
T 1o6v_A          308 LKNLTYLTLYFNNISDIS-P-----VSSLTKLQRLFFYNNK  342 (466)
T ss_dssp             CTTCSEEECCSSCCSCCG-G-----GGGCTTCCEEECCSSC
T ss_pred             CCCCCEEECcCCcCCCch-h-----hccCccCCEeECCCCc
Confidence            456666666654322110 0     4566777777776543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.50  E-value=5e-08  Score=91.04  Aligned_cols=214  Identities=14%  Similarity=0.108  Sum_probs=141.6

Q ss_pred             CCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEEECCceeEEEE
Q 014317          157 SGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRY  236 (427)
Q Consensus       157 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~~  236 (427)
                      ..+++|++|+|.++.+.+-. ...+..++.|+.|++.++...+...+ ..+++|+.|.++++. +..+. ..|+|++|.+
T Consensus        31 ~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~l~~L~~L~Ls~n~-l~~l~-~~~~L~~L~l  106 (317)
T 3o53_A           31 QSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYETLDL-ESLSTLRTLDLNNNY-VQELL-VGPSIETLHA  106 (317)
T ss_dssp             TTGGGCSEEECTTSCCCCCC-HHHHTTCTTCCEEECTTSCCEEEEEE-TTCTTCCEEECCSSE-EEEEE-ECTTCCEEEC
T ss_pred             ccCCCCCEEECcCCccCcCC-HHHhhCCCcCCEEECCCCcCCcchhh-hhcCCCCEEECcCCc-ccccc-CCCCcCEEEC
Confidence            35789999999998876532 23367899999999999876554443 356899999999876 55554 3489999999


Q ss_pred             eeeee-eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--ccccc-CCCCceeEEEEEEEccC
Q 014317          237 YGQAI-KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSL-FELPKLIDLRLRVTTPN  312 (427)
Q Consensus       237 ~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~-~~~~~L~~L~l~~~~~~  312 (427)
                      .++.. ......++.|+.+++..+....   .....+..+++|+.|++++ +.+.  .+..+ ..+++|++|+++.+.-.
T Consensus       107 ~~n~l~~~~~~~~~~L~~L~l~~N~l~~---~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  182 (317)
T 3o53_A          107 ANNNISRVSCSRGQGKKNIYLANNKITM---LRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (317)
T ss_dssp             CSSCCSEEEECCCSSCEEEECCSSCCCS---GGGBCTGGGSSEEEEECTT-SCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CCCccCCcCccccCCCCEEECCCCCCCC---ccchhhhccCCCCEEECCC-CCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence            87743 3334557889999998877432   2333456789999999998 4444  23333 46789999998433211


Q ss_pred             CCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEeceecCccHHHHHHHHHhccccccceEEE
Q 014317          313 RESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIE  392 (427)
Q Consensus       313 ~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i~  392 (427)
                        ....    ...+++|++|+++.+.-......    +  ....+|+.+.+.+-.-..  +   ..-+...+.|+.+.+.
T Consensus       183 --~~~~----~~~l~~L~~L~Ls~N~l~~l~~~----~--~~l~~L~~L~L~~N~l~~--l---~~~~~~l~~L~~L~l~  245 (317)
T 3o53_A          183 --DVKG----QVVFAKLKTLDLSSNKLAFMGPE----F--QSAAGVTWISLRNNKLVL--I---EKALRFSQNLEHFDLR  245 (317)
T ss_dssp             --EEEC----CCCCTTCCEEECCSSCCCEECGG----G--GGGTTCSEEECTTSCCCE--E---CTTCCCCTTCCEEECT
T ss_pred             --cccc----ccccccCCEEECCCCcCCcchhh----h--cccCcccEEECcCCcccc--h---hhHhhcCCCCCEEEcc
Confidence              1111    12489999999986542221111    1  134678888877643221  0   1124677899999987


Q ss_pred             eec
Q 014317          393 PSR  395 (427)
Q Consensus       393 ~~~  395 (427)
                      ...
T Consensus       246 ~N~  248 (317)
T 3o53_A          246 GNG  248 (317)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.50  E-value=5.4e-08  Score=95.56  Aligned_cols=195  Identities=16%  Similarity=0.111  Sum_probs=121.8

Q ss_pred             CCCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCCccEEEE----EC
Q 014317          154 RGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYLMEEIEI----SA  228 (427)
Q Consensus       154 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~~~i----~~  228 (427)
                      ..+..+++|+.|+|.++.+..-.. ..+.++++|+.|+|.++...... ..-..+++|++|.++++. +..+..    ..
T Consensus        93 ~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l  170 (452)
T 3zyi_A           93 DTFRHLHHLEVLQLGRNSIRQIEV-GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRV  170 (452)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTC
T ss_pred             HHcCCCCCCCEEECCCCccCCcCh-hhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcC
Confidence            346788899999998876543211 12567889999999887532210 111235788888888776 554432    24


Q ss_pred             CceeEEEEeee-ee----eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCCCce
Q 014317          229 PSLLSFRYYGQ-AI----KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKL  301 (427)
Q Consensus       229 p~L~~L~~~~~-~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L  301 (427)
                      |+|++|++.++ ..    ...+.+++.|+.+++..+....+     .-+..+++|+.|++++ +.+.  .+..+..+++|
T Consensus       171 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L  244 (452)
T 3zyi_A          171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-----PNLTPLVGLEELEMSG-NHFPEIRPGSFHGLSSL  244 (452)
T ss_dssp             TTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-----CCCTTCTTCCEEECTT-SCCSEECGGGGTTCTTC
T ss_pred             CcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-----ccccccccccEEECcC-CcCcccCcccccCccCC
Confidence            78888888763 11    12356788889888887764321     1246788999999997 4444  45667788899


Q ss_pred             eEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEec
Q 014317          302 IDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHG  365 (427)
Q Consensus       302 ~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~  365 (427)
                      ++|.++.+.-....    ...+..+++|+.|+|+.+.........   +  ....+|+.+.+.+
T Consensus       245 ~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~~~---~--~~l~~L~~L~L~~  299 (452)
T 3zyi_A          245 KKLWVMNSQVSLIE----RNAFDGLASLVELNLAHNNLSSLPHDL---F--TPLRYLVELHLHH  299 (452)
T ss_dssp             CEEECTTSCCCEEC----TTTTTTCTTCCEEECCSSCCSCCCTTS---S--TTCTTCCEEECCS
T ss_pred             CEEEeCCCcCceEC----HHHhcCCCCCCEEECCCCcCCccChHH---h--ccccCCCEEEccC
Confidence            99888432211111    123567899999999765422211110   1  1246788888876

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.50  E-value=5.1e-08  Score=96.61  Aligned_cols=214  Identities=14%  Similarity=0.098  Sum_probs=141.4

Q ss_pred             CCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEEECCceeEEEE
Q 014317          157 SGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRY  236 (427)
Q Consensus       157 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~~  236 (427)
                      ..+++|++|+|+++.+.+-. ...+..++.|+.|+|.+|...+... -..+++|+.|.++++. +..+.. .|+|+.|++
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~-~~~L~~L~L  106 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV-GPSIETLHA  106 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCC-GGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE-CTTCCEEEC
T ss_pred             ccCCCccEEEeeCCcCCCCC-HHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC-CCCcCEEEC
Confidence            35679999999998876421 1226789999999999987654444 3456899999999886 565543 489999999


Q ss_pred             eeeee-eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--ccccc-CCCCceeEEEEEEEccC
Q 014317          237 YGQAI-KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSL-FELPKLIDLRLRVTTPN  312 (427)
Q Consensus       237 ~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~-~~~~~L~~L~l~~~~~~  312 (427)
                      .++.. ......++.|+.+++..+...   ......+..+++|+.|++++ +.+.  .+..+ ..+++|++|+|+.+.-.
T Consensus       107 ~~N~l~~~~~~~l~~L~~L~L~~N~l~---~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          107 ANNNISRVSCSRGQGKKNIYLANNKIT---MLRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             CSSCCCCEEECCCSSCEEEECCSSCCC---SGGGBCGGGGSSEEEEECTT-SCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             cCCcCCCCCccccCCCCEEECCCCCCC---CCCchhhcCCCCCCEEECCC-CCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            88743 233355788999999887743   23334456789999999998 4444  34444 36889999998543221


Q ss_pred             CCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEeceecCccHHHHHHHHHhccccccceEEE
Q 014317          313 RESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIE  392 (427)
Q Consensus       313 ~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i~  392 (427)
                      .  ..   . ...+++|+.|+++.+........    +  ....+|+.+.+.+-.-..     +...+...+.|+.+.+.
T Consensus       183 ~--~~---~-~~~l~~L~~L~Ls~N~l~~~~~~----~--~~l~~L~~L~Ls~N~l~~-----lp~~l~~l~~L~~L~l~  245 (487)
T 3oja_A          183 D--VK---G-QVVFAKLKTLDLSSNKLAFMGPE----F--QSAAGVTWISLRNNKLVL-----IEKALRFSQNLEHFDLR  245 (487)
T ss_dssp             E--EE---C-CCCCTTCCEEECCSSCCCEECGG----G--GGGTTCSEEECTTSCCCE-----ECTTCCCCTTCCEEECT
T ss_pred             c--cc---c-cccCCCCCEEECCCCCCCCCCHh----H--cCCCCccEEEecCCcCcc-----cchhhccCCCCCEEEcC
Confidence            1  11   1 12589999999986543221111    1  134678888876632111     00124567889999886


Q ss_pred             eec
Q 014317          393 PSR  395 (427)
Q Consensus       393 ~~~  395 (427)
                      .+.
T Consensus       246 ~N~  248 (487)
T 3oja_A          246 GNG  248 (487)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.50  E-value=1.3e-07  Score=97.05  Aligned_cols=178  Identities=11%  Similarity=0.053  Sum_probs=113.3

Q ss_pred             cCCCCCCCCCCCcEEEEeeEE-eChhhHHHHH------hcCCccceeeeccCCCceeEE--EecCccccceEEEEecCCc
Q 014317          151 ESGRGLSGIKFLRCLHFKTVN-VNGKDIELFI------QNCPLLDRLCVDHSKTLVRLR--VIGSSIQLKYLEIQSCYLM  221 (427)
Q Consensus       151 ~lp~~~~~~~~L~~L~L~~~~-~~~~~l~~ll------~~cp~Le~L~l~~c~~~~~l~--i~~~~~~L~~L~l~~c~~l  221 (427)
                      .+|..+..+++|++|+|.++. +.+..+..-+      ..++.|+.|++.++.......  .-..+++|+.|.++++. +
T Consensus       264 ~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~-l  342 (636)
T 4eco_A          264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ-L  342 (636)
T ss_dssp             SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCC-C
T ss_pred             cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCc-C
Confidence            357778889999999999987 7652233222      346999999999886442111  12245789999998876 3


Q ss_pred             c-EEE-E-ECCceeEEEEeeeeee---eeccCCcc-cceeeeeeccccccchhhcccccc--CCCceEEEEeccceee--
Q 014317          222 E-EIE-I-SAPSLLSFRYYGQAIK---INIENVPQ-LVDVSIRGSHTFRVTYFVGPIISC--FPQLKTLELDSCNEVY--  290 (427)
Q Consensus       222 ~-~~~-i-~~p~L~~L~~~~~~~~---~~~~~~~~-L~~l~l~~~~~~~~~~~~~~~~~~--~~~l~~L~l~~~~~~~--  290 (427)
                      . .+. + ..++|+.|++.++...   ..+..++. |+.+++..+....    +...+..  +++|+.|++++ +.+.  
T Consensus       343 ~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~----lp~~~~~~~l~~L~~L~Ls~-N~l~~~  417 (636)
T 4eco_A          343 EGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY----IPNIFDAKSVSVMSAIDFSY-NEIGSV  417 (636)
T ss_dssp             EEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSS----CCSCCCTTCSSCEEEEECCS-SCTTTT
T ss_pred             ccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcc----cchhhhhcccCccCEEECcC-CcCCCc
Confidence            3 332 1 2378888888877543   23456777 9999888776322    2222333  44899999987 3433  


Q ss_pred             cccccC-------CCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEecc
Q 014317          291 MQFSLF-------ELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLND  338 (427)
Q Consensus       291 ~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~  338 (427)
                      .+..+.       .+++|++|+++.+.-.  ...  ..++..+++|+.|+++.+.
T Consensus       418 ~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~--~lp--~~~~~~l~~L~~L~Ls~N~  468 (636)
T 4eco_A          418 DGKNFDPLDPTPFKGINVSSINLSNNQIS--KFP--KELFSTGSPLSSINLMGNM  468 (636)
T ss_dssp             TTCSSCTTCSSCCCCCCEEEEECCSSCCC--SCC--THHHHTTCCCSEEECCSSC
T ss_pred             chhhhcccccccccCCCCCEEECcCCccC--cCC--HHHHccCCCCCEEECCCCC
Confidence            344444       5668888888543222  111  2345678999999987653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.48  E-value=4.8e-08  Score=90.82  Aligned_cols=166  Identities=17%  Similarity=0.207  Sum_probs=104.0

Q ss_pred             CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEE-E-ECCceeE
Q 014317          156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIE-I-SAPSLLS  233 (427)
Q Consensus       156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~-i-~~p~L~~  233 (427)
                      +..+++|++|+|.++.+.+-.-   +..++.|+.|++.++.... +..-..+++|+.|.++++. +..+. + ..++|++
T Consensus        59 ~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~  133 (308)
T 1h6u_A           59 VQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKN-VSAIAGLQSIKTLDLTSTQ-ITDVTPLAGLSNLQV  133 (308)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCCSC-CGGGTTCTTCCEEECTTSC-CCCCGGGTTCTTCCE
T ss_pred             hhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCcCCC-chhhcCCCCCCEEECCCCC-CCCchhhcCCCCCCE
Confidence            4567888888888877654221   6778888888888775322 1112245778888887765 33221 1 2377888


Q ss_pred             EEEeeeeeee--eccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceeecccccCCCCceeEEEEEEEcc
Q 014317          234 FRYYGQAIKI--NIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLRVTTP  311 (427)
Q Consensus       234 L~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  311 (427)
                      |++.++....  .+..++.|+.+++..+....+    .. +..+++|+.|.+++ +.+.....+..+++|++|+++.+.-
T Consensus       134 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~----~~-l~~l~~L~~L~l~~-n~l~~~~~l~~l~~L~~L~L~~N~l  207 (308)
T 1h6u_A          134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL----TP-LANLSKLTTLKADD-NKISDISPLASLPNLIEVHLKNNQI  207 (308)
T ss_dssp             EECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC----GG-GTTCTTCCEEECCS-SCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred             EECCCCccCcCccccCCCCccEEEccCCcCCCC----hh-hcCCCCCCEEECCC-CccCcChhhcCCCCCCEEEccCCcc
Confidence            8777663321  156677888888877663321    11 56788888888887 4444222256778888888743322


Q ss_pred             CCCChHHHHHHHHhCCCccEEEEEecc
Q 014317          312 NRESLLGLTCIMKACPFLQKLILQLND  338 (427)
Q Consensus       312 ~~~~~~~l~~ll~~~p~L~~L~i~~~~  338 (427)
                      .  +..   . +..+|+|+.|+++.+.
T Consensus       208 ~--~~~---~-l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          208 S--DVS---P-LANTSNLFIVTLTNQT  228 (308)
T ss_dssp             C--BCG---G-GTTCTTCCEEEEEEEE
T ss_pred             C--ccc---c-ccCCCCCCEEEccCCe
Confidence            1  221   1 5778888888888763

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.47  E-value=5.3e-08  Score=95.49  Aligned_cols=61  Identities=25%  Similarity=0.315  Sum_probs=29.0

Q ss_pred             cccCCCceEEEEeccceee--cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317          272 ISCFPQLKTLELDSCNEVY--MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLN  337 (427)
Q Consensus       272 ~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  337 (427)
                      +..+++|+.|++++ ..+.  .+..+..+++|++|+++.+.-..  .  ....+..+++|++|+++.+
T Consensus       295 ~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~--~~~~~~~l~~L~~L~Ls~N  357 (455)
T 3v47_A          295 FSHFTDLEQLTLAQ-NEINKIDDNAFWGLTHLLKLNLSQNFLGS--I--DSRMFENLDKLEVLDLSYN  357 (455)
T ss_dssp             TTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCCE--E--CGGGGTTCTTCCEEECCSS
T ss_pred             cccCCCCCEEECCC-CcccccChhHhcCcccCCEEECCCCccCC--c--ChhHhcCcccCCEEECCCC
Confidence            45566666666665 2332  23344555666666653321111  0  0122345566666666543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.47  E-value=9.2e-08  Score=94.26  Aligned_cols=217  Identities=16%  Similarity=0.119  Sum_probs=111.2

Q ss_pred             CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEE-E-ECCceeE
Q 014317          156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIE-I-SAPSLLS  233 (427)
Q Consensus       156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~-i-~~p~L~~  233 (427)
                      +..+++|++|+|.++.+.+-.-   +..+++|+.|++.+|..... .--..+++|++|.+++|. +..+. + ..++|++
T Consensus        86 ~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~  160 (466)
T 1o6v_A           86 LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNT-ISDISALSGLTSLQQ  160 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCC-GGGTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSE
T ss_pred             hhccccCCEEECCCCccccChh---hcCCCCCCEEECCCCCCCCC-hHHcCCCCCCEEECCCCc-cCCChhhccCCcccE
Confidence            5678889999988887654321   67889999999988753221 112345788888888774 22221 1 1367777


Q ss_pred             EEEeeeee-eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceeecccccCCCCceeEEEEEEEccC
Q 014317          234 FRYYGQAI-KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLRVTTPN  312 (427)
Q Consensus       234 L~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  312 (427)
                      |.+.+... ...+.+++.|+.+++..+.....     ..+..+++|+.|.+++| .+.....+..+++|++|+++.+.-.
T Consensus       161 L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l~  234 (466)
T 1o6v_A          161 LSFGNQVTDLKPLANLTTLERLDISSNKVSDI-----SVLAKLTNLESLIATNN-QISDITPLGILTNLDELSLNGNQLK  234 (466)
T ss_dssp             EEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSS-CCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             eecCCcccCchhhccCCCCCEEECcCCcCCCC-----hhhccCCCCCEEEecCC-cccccccccccCCCCEEECCCCCcc
Confidence            77654321 11245666777777765543221     11345566666666652 2221111334455555555322111


Q ss_pred             CCChHHHHHHHHhCCCccEEEEEeccCCCCC--------------Cc-ccccCCCCccCCccEEEEeceecCccHHHHHH
Q 014317          313 RESLLGLTCIMKACPFLQKLILQLNDHGRRL--------------GK-KRQQFPKYSHQHLKVVELHGFLGRQFDVELAQ  377 (427)
Q Consensus       313 ~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~--------------~~-~~~~~~~~~~~~L~~v~i~~f~g~~~e~~~~~  377 (427)
                        +.    ..+..+++|++|+++.+.-....              ++ .....+-....+|+.+.+.+..-..-.     
T Consensus       235 --~~----~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~-----  303 (466)
T 1o6v_A          235 --DI----GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS-----  303 (466)
T ss_dssp             --CC----GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCG-----
T ss_pred             --cc----hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCch-----
Confidence              11    11334555555555433211100              00 000001123457777777664322111     


Q ss_pred             HHHhccccccceEEEeec
Q 014317          378 YLFQNATMLEKLIIEPSR  395 (427)
Q Consensus       378 ~ll~~a~~L~~l~i~~~~  395 (427)
                      . +.+.+.|+.+.+..+.
T Consensus       304 ~-~~~l~~L~~L~L~~n~  320 (466)
T 1o6v_A          304 P-ISNLKNLTYLTLYFNN  320 (466)
T ss_dssp             G-GGGCTTCSEEECCSSC
T ss_pred             h-hcCCCCCCEEECcCCc
Confidence            1 5678888888887654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.47  E-value=9.2e-09  Score=104.87  Aligned_cols=108  Identities=18%  Similarity=0.198  Sum_probs=62.3

Q ss_pred             cCCCCCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEE--ecCccccceEEEEecCCccEEEE--
Q 014317          151 ESGRGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRV--IGSSIQLKYLEIQSCYLMEEIEI--  226 (427)
Q Consensus       151 ~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~~~~i--  226 (427)
                      .+|..+..+++|++|++.++.+.... ...+..+|.|+.|++.++.....+..  -..+++|+.|.++++. +..+..  
T Consensus       292 ~lp~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~  369 (606)
T 3t6q_A          292 ELPSGLVGLSTLKKLVLSANKFENLC-QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCN  369 (606)
T ss_dssp             CCCSSCCSCTTCCEEECTTCCCSBGG-GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEEST
T ss_pred             CCChhhcccccCCEEECccCCcCcCc-hhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cccccCcc
Confidence            45677788889999999888765421 12256778888888877753322111  1234667777776655 333321  


Q ss_pred             ----ECCceeEEEEeeeeee----eeccCCcccceeeeeecc
Q 014317          227 ----SAPSLLSFRYYGQAIK----INIENVPQLVDVSIRGSH  260 (427)
Q Consensus       227 ----~~p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~  260 (427)
                          ..++|++|++.++...    ..+..++.|+.+++..+.
T Consensus       370 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  411 (606)
T 3t6q_A          370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR  411 (606)
T ss_dssp             TTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred             hhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence                1366666666654321    133445666666665443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.46  E-value=2.6e-08  Score=86.14  Aligned_cols=150  Identities=16%  Similarity=0.180  Sum_probs=73.4

Q ss_pred             CCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEEECCceeEEEEe
Q 014317          158 GIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYY  237 (427)
Q Consensus       158 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~~~  237 (427)
                      .+++|+.|++.++.+.+-.   -+..+++|+.|++.+|. ...+..-..+++|++|.++++. +...             
T Consensus        42 ~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~l~~n~-~~~~~~l~~l~~L~~L~l~~n~-l~~~-------------  103 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLT---GIEYAHNIKDLTINNIH-ATNYNPISGLSNLERLRIMGKD-VTSD-------------  103 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCT---TGGGCTTCSEEEEESCC-CSCCGGGTTCTTCCEEEEECTT-CBGG-------------
T ss_pred             hcCCccEEeccCCCccChH---HHhcCCCCCEEEccCCC-CCcchhhhcCCCCCEEEeECCc-cCcc-------------
Confidence            4566666666666554311   15556667777766662 2211111123455555555443 1100             


Q ss_pred             eeeeeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceeecccccCCCCceeEEEEEEEccCCCChH
Q 014317          238 GQAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLRVTTPNRESLL  317 (427)
Q Consensus       238 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  317 (427)
                         .+..+..++.|+.+++..+..   .......+..+++|+.|.+++|..+.....+..+++|++|+++.+.-.  +. 
T Consensus       104 ---~~~~l~~l~~L~~L~Ls~n~i---~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~--~~-  174 (197)
T 4ezg_A          104 ---KIPNLSGLTSLTLLDISHSAH---DDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVH--DY-  174 (197)
T ss_dssp             ---GSCCCTTCTTCCEEECCSSBC---BGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCC--CC-
T ss_pred             ---cChhhcCCCCCCEEEecCCcc---CcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCc--Ch-
Confidence               011234455555555555442   211223335667777777776442431124556667777766332111  11 


Q ss_pred             HHHHHHHhCCCccEEEEEec
Q 014317          318 GLTCIMKACPFLQKLILQLN  337 (427)
Q Consensus       318 ~l~~ll~~~p~L~~L~i~~~  337 (427)
                        . .+..+|+|++|++.++
T Consensus       175 --~-~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          175 --R-GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             --T-TGGGCSSCCEEEECBC
T ss_pred             --H-HhccCCCCCEEEeeCc
Confidence              1 3456777777777643

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.46  E-value=3.5e-08  Score=99.72  Aligned_cols=170  Identities=15%  Similarity=0.083  Sum_probs=90.1

Q ss_pred             ccccceEEEEecCCccEEEE------ECCceeEEEEeeeee---eeeccCCcccceeeeeeccccccchhhccccccCCC
Q 014317          207 SIQLKYLEIQSCYLMEEIEI------SAPSLLSFRYYGQAI---KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQ  277 (427)
Q Consensus       207 ~~~L~~L~l~~c~~l~~~~i------~~p~L~~L~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~  277 (427)
                      +++|+.|.++++. +..+..      ..++|++|++.++..   +..+..++.|+.+++..+.....  .....+..+++
T Consensus       346 ~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~l~~  422 (570)
T 2z63_A          346 LPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM--SEFSVFLSLRN  422 (570)
T ss_dssp             CTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESC--TTSCTTTTCTT
T ss_pred             CCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccc--cchhhhhcCCC
Confidence            3556666665554 332210      136666666655421   22245666677766665442110  01123456777


Q ss_pred             ceEEEEeccceee-cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCC--Cc
Q 014317          278 LKTLELDSCNEVY-MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPK--YS  354 (427)
Q Consensus       278 l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~--~~  354 (427)
                      |+.|++++|.-.. .+..+..+++|++|+++.+.-..   ..++..+..+++|+.|+++.+.-..   .    .|.  ..
T Consensus       423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~p~~~~~l~~L~~L~l~~n~l~~---~----~~~~~~~  492 (570)
T 2z63_A          423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE---NFLPDIFTELRNLTFLDLSQCQLEQ---L----SPTAFNS  492 (570)
T ss_dssp             CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG---GEECSCCTTCTTCCEEECTTSCCCE---E----CTTTTTT
T ss_pred             CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcc---ccchhhhhcccCCCEEECCCCcccc---C----Chhhhhc
Confidence            7777777643222 44455667777777773321110   0112334677888888886543211   1    111  13


Q ss_pred             cCCccEEEEecee--cCccHHHHHHHHHhccccccceEEEeec
Q 014317          355 HQHLKVVELHGFL--GRQFDVELAQYLFQNATMLEKLIIEPSR  395 (427)
Q Consensus       355 ~~~L~~v~i~~f~--g~~~e~~~~~~ll~~a~~L~~l~i~~~~  395 (427)
                      ..+|+.+.+.+..  +...      ..+.+.+.|+.+.+....
T Consensus       493 l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          493 LSSLQVLNMASNQLKSVPD------GIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             CTTCCEEECCSSCCSCCCT------TTTTTCTTCCEEECCSSC
T ss_pred             ccCCCEEeCCCCcCCCCCH------HHhhcccCCcEEEecCCc
Confidence            4688888887643  2211      235678999999986544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.45  E-value=3.7e-08  Score=100.39  Aligned_cols=126  Identities=14%  Similarity=0.135  Sum_probs=69.3

Q ss_pred             CCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCCccEEEE----ECC
Q 014317          155 GLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYLMEEIEI----SAP  229 (427)
Q Consensus       155 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~~~i----~~p  229 (427)
                      .+..+++|++|+|.++.+..  +..-+..++.|+.|++.++...... .....+++|+.|.++++.....+..    ..+
T Consensus       273 ~~~~l~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~  350 (606)
T 3t6q_A          273 TFHCFSGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE  350 (606)
T ss_dssp             TTTTCTTCSEEECTTSCCSC--CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred             HhccccCCCEEeccCCccCC--CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence            36677788888887766542  1112456778888888777533210 1112346777887777652212211    237


Q ss_pred             ceeEEEEeeeee------eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEec
Q 014317          230 SLLSFRYYGQAI------KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDS  285 (427)
Q Consensus       230 ~L~~L~~~~~~~------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~  285 (427)
                      +|++|++.++..      +..+..++.|+.+++..+....   .....+..+++|+.|++++
T Consensus       351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~  409 (606)
T 3t6q_A          351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS---LKTEAFKECPQLELLDLAF  409 (606)
T ss_dssp             TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEE---ECTTTTTTCTTCSEEECTT
T ss_pred             cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCc---CCHHHhcCCccCCeEECCC
Confidence            777777776532      1235667777777776654211   1122234455555555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.45  E-value=8.8e-08  Score=97.49  Aligned_cols=215  Identities=15%  Similarity=0.150  Sum_probs=123.7

Q ss_pred             CCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCCccEEEEE-CCcee
Q 014317          155 GLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYLMEEIEIS-APSLL  232 (427)
Q Consensus       155 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~~~i~-~p~L~  232 (427)
                      .+..+++|+.|+|.++.+..- ...+++.++.|+.|++.++...... ..-..+++|+.|.++++. +..+.+. .|+|+
T Consensus       118 ~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~  195 (597)
T 3oja_B          118 VFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDLSLIPSLF  195 (597)
T ss_dssp             TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCCGGGCTTCS
T ss_pred             HHcCCCCCCEEEeeCCCCCCC-CHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcChhhhhhhh
Confidence            467899999999999876531 1123578999999999988643211 111245889999998775 3333222 25555


Q ss_pred             EEEEeeeeee-------------------e-eccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--
Q 014317          233 SFRYYGQAIK-------------------I-NIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--  290 (427)
Q Consensus       233 ~L~~~~~~~~-------------------~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--  290 (427)
                      .|++.++...                   . .....+.|+.+.+..+....     ...+..+++|+.|++++ +.+.  
T Consensus       196 ~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~-----~~~l~~l~~L~~L~Ls~-N~l~~~  269 (597)
T 3oja_B          196 HANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD-----TAWLLNYPGLVEVDLSY-NELEKI  269 (597)
T ss_dssp             EEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC-----CGGGGGCTTCSEEECCS-SCCCEE
T ss_pred             hhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC-----ChhhccCCCCCEEECCC-CccCCC
Confidence            5555443211                   1 11112356666665554221     13356788888888887 3443  


Q ss_pred             cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEeceecCc
Q 014317          291 MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFLGRQ  370 (427)
Q Consensus       291 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f~g~~  370 (427)
                      .+..+..+++|+.|.|+.+.-.     ++......+|+|+.|+++.+.....+..    +  ....+|+.+.+.+..-..
T Consensus       270 ~~~~~~~l~~L~~L~Ls~N~l~-----~l~~~~~~l~~L~~L~Ls~N~l~~i~~~----~--~~l~~L~~L~L~~N~l~~  338 (597)
T 3oja_B          270 MYHPFVKMQRLERLYISNNRLV-----ALNLYGQPIPTLKVLDLSHNHLLHVERN----Q--PQFDRLENLYLDHNSIVT  338 (597)
T ss_dssp             ESGGGTTCSSCCEEECTTSCCC-----EEECSSSCCTTCCEEECCSSCCCCCGGG----H--HHHTTCSEEECCSSCCCC
T ss_pred             CHHHhcCccCCCEEECCCCCCC-----CCCcccccCCCCcEEECCCCCCCccCcc----c--ccCCCCCEEECCCCCCCC
Confidence            4556677788888887432111     1122234578888888876532211111    0  134577888776643211


Q ss_pred             cHHHHHHHHHhccccccceEEEeec
Q 014317          371 FDVELAQYLFQNATMLEKLIIEPSR  395 (427)
Q Consensus       371 ~e~~~~~~ll~~a~~L~~l~i~~~~  395 (427)
                      -       -+...+.|+.+.+....
T Consensus       339 ~-------~~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          339 L-------KLSTHHTLKNLTLSHND  356 (597)
T ss_dssp             C-------CCCTTCCCSEEECCSSC
T ss_pred             c-------ChhhcCCCCEEEeeCCC
Confidence            1       14566788888875443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.45  E-value=2.1e-07  Score=91.88  Aligned_cols=174  Identities=16%  Similarity=0.150  Sum_probs=94.8

Q ss_pred             CCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEE-EecCccccceEEEEecCCccEEEEE---CCc
Q 014317          155 GLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLR-VIGSSIQLKYLEIQSCYLMEEIEIS---APS  230 (427)
Q Consensus       155 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~-i~~~~~~L~~L~l~~c~~l~~~~i~---~p~  230 (427)
                      .+..+++|++|+|.++.+..-. ...+..++.|+.|++.++....... .-..+++|+.|.+++|..+..+...   .++
T Consensus       147 ~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  225 (477)
T 2id5_A          147 AFSGLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN  225 (477)
T ss_dssp             SSTTCTTCCEEEEESCCCSSCC-HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred             hccCCCCCCEEECCCCcCcccC-hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence            4556666666666666554321 1235566777777776654322100 0113467777777776654444221   246


Q ss_pred             eeEEEEeeeeee----eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCCCceeEE
Q 014317          231 LLSFRYYGQAIK----INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKLIDL  304 (427)
Q Consensus       231 L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~~L  304 (427)
                      |++|++.++...    ..+..++.|+.+++..+...   ......+..+++|+.|.+++ +.+.  .+..+..+++|+.|
T Consensus       226 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L  301 (477)
T 2id5_A          226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS---TIEGSMLHELLRLQEIQLVG-GQLAVVEPYAFRGLNYLRVL  301 (477)
T ss_dssp             CSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC---EECTTSCTTCTTCCEEECCS-SCCSEECTTTBTTCTTCCEE
T ss_pred             ccEEECcCCcccccCHHHhcCccccCeeECCCCcCC---ccChhhccccccCCEEECCC-CccceECHHHhcCcccCCEE
Confidence            777777665322    12456677777777766522   22223346677777777776 3333  34455667777777


Q ss_pred             EEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317          305 RLRVTTPNRESLLGLTCIMKACPFLQKLILQLN  337 (427)
Q Consensus       305 ~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  337 (427)
                      +|+.+.-....    ...+..+++|++|++..+
T Consensus       302 ~L~~N~l~~~~----~~~~~~l~~L~~L~l~~N  330 (477)
T 2id5_A          302 NVSGNQLTTLE----ESVFHSVGNLETLILDSN  330 (477)
T ss_dssp             ECCSSCCSCCC----GGGBSCGGGCCEEECCSS
T ss_pred             ECCCCcCceeC----HhHcCCCcccCEEEccCC
Confidence            77433211111    123455677777777654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.44  E-value=1.3e-08  Score=107.26  Aligned_cols=151  Identities=11%  Similarity=0.111  Sum_probs=88.8

Q ss_pred             CCCCCCCCCCCcEEEEeeEEeChh----------------hHHHHHh--cCCccceeeeccCCCceeEE-EecCccccce
Q 014317          152 SGRGLSGIKFLRCLHFKTVNVNGK----------------DIELFIQ--NCPLLDRLCVDHSKTLVRLR-VIGSSIQLKY  212 (427)
Q Consensus       152 lp~~~~~~~~L~~L~L~~~~~~~~----------------~l~~ll~--~cp~Le~L~l~~c~~~~~l~-i~~~~~~L~~  212 (427)
                      +|..+..+++|+.|+|+++.+.++                .+..-+.  .+++|+.|+|.+|...+.+. .-..+++|+.
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            566677788888888888777652                1222233  67888888888775433221 1123467777


Q ss_pred             EEEEecCCccE--EE----------EECCceeEEEEeeeee---ee--eccCCcccceeeeeeccccccchhhccccccC
Q 014317          213 LEIQSCYLMEE--IE----------ISAPSLLSFRYYGQAI---KI--NIENVPQLVDVSIRGSHTFRVTYFVGPIISCF  275 (427)
Q Consensus       213 L~l~~c~~l~~--~~----------i~~p~L~~L~~~~~~~---~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~  275 (427)
                      |.++++..+..  +.          ...|+|+.|++.++..   +.  .+.+++.|+.+.+..+..   . .+. .+..+
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l---~-~lp-~~~~L  594 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV---R-HLE-AFGTN  594 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCC---C-BCC-CCCTT
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCc---c-cch-hhcCC
Confidence            77776652221  10          1125777777776532   33  455677777777766552   2 222 34667


Q ss_pred             CCceEEEEeccceee-cccccCCCCc-eeEEEEEE
Q 014317          276 PQLKTLELDSCNEVY-MQFSLFELPK-LIDLRLRV  308 (427)
Q Consensus       276 ~~l~~L~l~~~~~~~-~~~~~~~~~~-L~~L~l~~  308 (427)
                      ++|+.|.+++ +.+. ++..+..+++ |++|.|+.
T Consensus       595 ~~L~~L~Ls~-N~l~~lp~~l~~l~~~L~~L~Ls~  628 (876)
T 4ecn_A          595 VKLTDLKLDY-NQIEEIPEDFCAFTDQVEGLGFSH  628 (876)
T ss_dssp             SEESEEECCS-SCCSCCCTTSCEECTTCCEEECCS
T ss_pred             CcceEEECcC-CccccchHHHhhccccCCEEECcC
Confidence            7777777776 3333 5555556666 77777643

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.44  E-value=1.5e-08  Score=99.47  Aligned_cols=123  Identities=15%  Similarity=0.050  Sum_probs=62.9

Q ss_pred             ccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCCCceeEEEEEEEccCCCChHHHHHH
Q 014317          245 IENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKLIDLRLRVTTPNRESLLGLTCI  322 (427)
Q Consensus       245 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l  322 (427)
                      +..++.|+.+++..+..   .......+..+++|+.|+++++ .+.  .+..+..+++|++|+++.+.-..  .  ....
T Consensus       295 ~~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~--~~~~  366 (455)
T 3v47_A          295 FSHFTDLEQLTLAQNEI---NKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRA--L--GDQS  366 (455)
T ss_dssp             TTTCTTCCEEECTTSCC---CEECTTTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSSCCCE--E--CTTT
T ss_pred             cccCCCCCEEECCCCcc---cccChhHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCCcccc--c--Chhh
Confidence            34556666666655542   2222233456777888888763 333  34455667777777774332111  0  0123


Q ss_pred             HHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEece--ecCccHHHHHHHHH
Q 014317          323 MKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGF--LGRQFDVELAQYLF  380 (427)
Q Consensus       323 l~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f--~g~~~e~~~~~~ll  380 (427)
                      +..+++|+.|++..+.-.......   +  ....+|+.+.+.+-  .+....+.+....+
T Consensus       367 ~~~l~~L~~L~L~~N~l~~~~~~~---~--~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l  421 (455)
T 3v47_A          367 FLGLPNLKELALDTNQLKSVPDGI---F--DRLTSLQKIWLHTNPWDCSCPRIDYLSRWL  421 (455)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTT---T--TTCTTCCEEECCSSCBCCCTTTTHHHHHHH
T ss_pred             ccccccccEEECCCCccccCCHhH---h--ccCCcccEEEccCCCcccCCCcchHHHHHH
Confidence            456778888887654322111100   0  12456777777653  34444444443333

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.42  E-value=7e-08  Score=92.74  Aligned_cols=215  Identities=15%  Similarity=0.150  Sum_probs=118.2

Q ss_pred             CCCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCCccEEEEE-CCce
Q 014317          154 RGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYLMEEIEIS-APSL  231 (427)
Q Consensus       154 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~~~i~-~p~L  231 (427)
                      ..+..+++|++|+|.++.+..- ...++..++.|+.|++.++...... ..-..+++|+.|.++++. +..+.+. .|+|
T Consensus       111 ~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~L  188 (390)
T 3o6n_A          111 HVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDLSLIPSL  188 (390)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCCGGGCTTC
T ss_pred             HHhcCCCCCCEEECCCCccCcC-CHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCcccccccccc
Confidence            3467899999999999876631 1123577999999999988643211 111245789999998876 4443332 3777


Q ss_pred             eEEEEeeeeeee--------------------eccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-
Q 014317          232 LSFRYYGQAIKI--------------------NIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-  290 (427)
Q Consensus       232 ~~L~~~~~~~~~--------------------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-  290 (427)
                      +.|.+.+.....                    .....+.|+.+++..+....     ...+..+++|+.|++++ ..+. 
T Consensus       189 ~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~-----~~~l~~l~~L~~L~Ls~-n~l~~  262 (390)
T 3o6n_A          189 FHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD-----TAWLLNYPGLVEVDLSY-NELEK  262 (390)
T ss_dssp             SEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC-----CGGGGGCTTCSEEECCS-SCCCE
T ss_pred             ceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcc-----cHHHcCCCCccEEECCC-CcCCC
Confidence            777766542211                    01112344555544443211     12345677777777776 3333 


Q ss_pred             -cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEeceecC
Q 014317          291 -MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFLGR  369 (427)
Q Consensus       291 -~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f~g~  369 (427)
                       .+..+..+++|++|.++.+.-.  .   +......+|+|++|+++.+.-...+..    .  ....+|+.+.+.+-.-.
T Consensus       263 ~~~~~~~~l~~L~~L~L~~n~l~--~---~~~~~~~l~~L~~L~L~~n~l~~~~~~----~--~~l~~L~~L~L~~N~i~  331 (390)
T 3o6n_A          263 IMYHPFVKMQRLERLYISNNRLV--A---LNLYGQPIPTLKVLDLSHNHLLHVERN----Q--PQFDRLENLYLDHNSIV  331 (390)
T ss_dssp             EESGGGTTCSSCCEEECCSSCCC--E---EECSSSCCTTCCEEECCSSCCCCCGGG----H--HHHTTCSEEECCSSCCC
T ss_pred             cChhHccccccCCEEECCCCcCc--c---cCcccCCCCCCCEEECCCCcceecCcc----c--cccCcCCEEECCCCccc
Confidence             3455566777777777432111  1   111224567777777765432111000    0  12356666666653321


Q ss_pred             ccHHHHHHHHHhccccccceEEEee
Q 014317          370 QFDVELAQYLFQNATMLEKLIIEPS  394 (427)
Q Consensus       370 ~~e~~~~~~ll~~a~~L~~l~i~~~  394 (427)
                      .-.       +...+.|+.+.+...
T Consensus       332 ~~~-------~~~~~~L~~L~l~~N  349 (390)
T 3o6n_A          332 TLK-------LSTHHTLKNLTLSHN  349 (390)
T ss_dssp             CCC-------CCTTCCCSEEECCSS
T ss_pred             eeC-------chhhccCCEEEcCCC
Confidence            111       445667777776543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.41  E-value=4.7e-08  Score=91.08  Aligned_cols=39  Identities=23%  Similarity=0.278  Sum_probs=18.4

Q ss_pred             CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccC
Q 014317          156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHS  195 (427)
Q Consensus       156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c  195 (427)
                      +..+++|++|+|.++.+... +...+..++.|+.|++.++
T Consensus        97 l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N  135 (313)
T 1ogq_A           97 IAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYN  135 (313)
T ss_dssp             GGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSS
T ss_pred             HhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCEEeCCCC
Confidence            44555555555555544311 0011344555555555554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.41  E-value=2.8e-08  Score=101.25  Aligned_cols=168  Identities=13%  Similarity=0.089  Sum_probs=117.2

Q ss_pred             CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEE-ECCceeEE
Q 014317          156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEI-SAPSLLSF  234 (427)
Q Consensus       156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i-~~p~L~~L  234 (427)
                      +..+++|+.|++.++.+..-.   -+..++.|++|++.+|.......+  .+++|+.|.++++.....+.+ ..|+|++|
T Consensus       281 ~~~l~~L~~L~l~~~~~~~l~---~l~~~~~L~~L~l~~n~l~~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L  355 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVSIKYLE---DVPKHFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYL  355 (606)
T ss_dssp             CGGGTTCSEEEEESCCCCCCC---CCCTTCCCSEEEEESCCCSSCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEE
T ss_pred             cccCCCCCEEEecCccchhhh---hccccccCCEEEcccccCcccccC--CCCccceeeccCCcCccchhhccCCCCCEE
Confidence            677899999999988765422   366789999999999875221122  568999999999865554433 35899999


Q ss_pred             EEeeeee------eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cc-cccCCCCceeEEE
Q 014317          235 RYYGQAI------KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQ-FSLFELPKLIDLR  305 (427)
Q Consensus       235 ~~~~~~~------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~-~~~~~~~~L~~L~  305 (427)
                      ++.++..      +..+..++.|+.+++..+....    +...+..+++|+.|.+++ ..+.  .+ ..+..+++|++|+
T Consensus       356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~----~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~  430 (606)
T 3vq2_A          356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII----MSANFMGLEELQHLDFQH-STLKRVTEFSAFLSLEKLLYLD  430 (606)
T ss_dssp             ECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE----ECCCCTTCTTCCEEECTT-SEEESTTTTTTTTTCTTCCEEE
T ss_pred             ECcCCccCCCcchhhhhccCCcccEeECCCCcccc----chhhccCCCCCCeeECCC-CccCCccChhhhhccccCCEEE
Confidence            9987643      2345678999999998776322    224457889999999998 4444  23 4567888999998


Q ss_pred             EEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317          306 LRVTTPNRESLLGLTCIMKACPFLQKLILQLN  337 (427)
Q Consensus       306 l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  337 (427)
                      ++.+.-.. .   ....+..+++|++|++..+
T Consensus       431 l~~n~l~~-~---~~~~~~~l~~L~~L~l~~n  458 (606)
T 3vq2_A          431 ISYTNTKI-D---FDGIFLGLTSLNTLKMAGN  458 (606)
T ss_dssp             CTTSCCEE-C---CTTTTTTCTTCCEEECTTC
T ss_pred             CcCCCCCc-c---chhhhcCCCCCCEEECCCC
Confidence            84322111 0   1233567888999888655

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.41  E-value=4.1e-08  Score=96.43  Aligned_cols=173  Identities=16%  Similarity=0.113  Sum_probs=81.1

Q ss_pred             CCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEE--ecCccccceEEEEecCCccEEEEE----C
Q 014317          155 GLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRV--IGSSIQLKYLEIQSCYLMEEIEIS----A  228 (427)
Q Consensus       155 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~~~~i~----~  228 (427)
                      .+.++++|++|+|.++.+..-. ...+..+++|+.|++.++.... +.-  -..+++|+.|.+++|..+..+...    .
T Consensus       118 ~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l  195 (452)
T 3zyi_A          118 AFNGLASLNTLELFDNWLTVIP-SGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL  195 (452)
T ss_dssp             TTTTCTTCCEEECCSSCCSBCC-TTTSSSCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC
T ss_pred             hccCcccCCEEECCCCcCCccC-hhhhcccCCCCEEECCCCCcce-eCHhHHhcCCcccEEeCCCCCCccccChhhccCC
Confidence            3456666777766665543210 1123456666666666654221 110  113456666666665544444321    2


Q ss_pred             CceeEEEEeeeeee--eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCCCceeEE
Q 014317          229 PSLLSFRYYGQAIK--INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKLIDL  304 (427)
Q Consensus       229 p~L~~L~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~~L  304 (427)
                      ++|++|++.++...  -.+..++.|+.++++.+...   ......+..+++|+.|.+++ +.+.  .+..+..+++|++|
T Consensus       196 ~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L  271 (452)
T 3zyi_A          196 FNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFP---EIRPGSFHGLSSLKKLWVMN-SQVSLIERNAFDGLASLVEL  271 (452)
T ss_dssp             TTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCS---EECGGGGTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCcccccccccccccccEEECcCCcCc---ccCcccccCccCCCEEEeCC-CcCceECHHHhcCCCCCCEE
Confidence            56666666554221  12344555666666554421   12222334555666666655 2332  23334455556665


Q ss_pred             EEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317          305 RLRVTTPNRESLLGLTCIMKACPFLQKLILQLN  337 (427)
Q Consensus       305 ~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  337 (427)
                      +|+.+.-....    ...+..+++|+.|+|+.+
T Consensus       272 ~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N  300 (452)
T 3zyi_A          272 NLAHNNLSSLP----HDLFTPLRYLVELHLHHN  300 (452)
T ss_dssp             ECCSSCCSCCC----TTSSTTCTTCCEEECCSS
T ss_pred             ECCCCcCCccC----hHHhccccCCCEEEccCC
Confidence            55332111100    112344556666665543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.40  E-value=4.4e-08  Score=95.85  Aligned_cols=144  Identities=13%  Similarity=0.132  Sum_probs=58.9

Q ss_pred             CCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEE--ecCccccceEEEEecCCccEEEEE----CCc
Q 014317          157 SGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRV--IGSSIQLKYLEIQSCYLMEEIEIS----APS  230 (427)
Q Consensus       157 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~~~~i~----~p~  230 (427)
                      .++++|++|+|.++.+..-. ...+..+++|+.|++.++.... +.-  -..+++|+.|.++++..+..+...    .++
T Consensus       109 ~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~  186 (440)
T 3zyj_A          109 NGLANLNTLELFDNRLTTIP-NGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN  186 (440)
T ss_dssp             TTCSSCCEEECCSSCCSSCC-TTTSCSCSSCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSS
T ss_pred             cCCccCCEEECCCCcCCeeC-HhHhhccccCceeeCCCCcccc-cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccc
Confidence            34555555555554433210 0113345555555555443211 100  012345555555554433333211    245


Q ss_pred             eeEEEEeeeeeee--eccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCCCceeEEEE
Q 014317          231 LLSFRYYGQAIKI--NIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKLIDLRL  306 (427)
Q Consensus       231 L~~L~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~~L~l  306 (427)
                      |++|++.++....  .+..++.|+.+++..+..   .......+..+++|+.|.+++ +.+.  .+..+..+++|++|+|
T Consensus       187 L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l---~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L  262 (440)
T 3zyj_A          187 LRYLNLAMCNLREIPNLTPLIKLDELDLSGNHL---SAIRPGSFQGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINL  262 (440)
T ss_dssp             CCEEECTTSCCSSCCCCTTCSSCCEEECTTSCC---CEECTTTTTTCTTCCEEECTT-CCCCEECTTSSTTCTTCCEEEC
T ss_pred             cCeecCCCCcCccccccCCCcccCEEECCCCcc---CccChhhhccCccCCEEECCC-CceeEEChhhhcCCCCCCEEEC
Confidence            5555554442110  123444555555544432   111122234455555555554 2222  2233344455555554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.40  E-value=6.7e-08  Score=90.03  Aligned_cols=214  Identities=15%  Similarity=0.131  Sum_probs=122.4

Q ss_pred             CCCCCCCCCCcEEEEee-EEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCCcc-EEE--E-
Q 014317          153 GRGLSGIKFLRCLHFKT-VNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYLME-EIE--I-  226 (427)
Q Consensus       153 p~~~~~~~~L~~L~L~~-~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~-~~~--i-  226 (427)
                      |..+..+++|++|+|.+ ..+.+. +..-+..++.|++|++.++...+.+ ..-..+++|++|.++++. +. .+.  + 
T Consensus        69 ~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~  146 (313)
T 1ogq_A           69 PSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA-LSGTLPPSIS  146 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE-EESCCCGGGG
T ss_pred             ChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCc-cCCcCChHHh
Confidence            33467888999999984 333221 1112567899999999887644221 111245788888887764 22 111  1 


Q ss_pred             ECCceeEEEEeeeee----eeeccCCc-ccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCCC
Q 014317          227 SAPSLLSFRYYGQAI----KINIENVP-QLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELP  299 (427)
Q Consensus       227 ~~p~L~~L~~~~~~~----~~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~  299 (427)
                      ..++|++|++.++..    +..+..++ .|+.+++..+...   ......+..+. |+.|++++ +.+.  .+..+..++
T Consensus       147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~---~~~~~~~~~l~-L~~L~Ls~-N~l~~~~~~~~~~l~  221 (313)
T 1ogq_A          147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT---GKIPPTFANLN-LAFVDLSR-NMLEGDASVLFGSDK  221 (313)
T ss_dssp             GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE---EECCGGGGGCC-CSEEECCS-SEEEECCGGGCCTTS
T ss_pred             cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee---ccCChHHhCCc-ccEEECcC-CcccCcCCHHHhcCC
Confidence            247888888877643    23455666 7888888776532   12222334444 88888887 4444  555667788


Q ss_pred             ceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCC--CccCCccEEEEece--ecCccHHHH
Q 014317          300 KLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPK--YSHQHLKVVELHGF--LGRQFDVEL  375 (427)
Q Consensus       300 ~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~--~~~~~L~~v~i~~f--~g~~~e~~~  375 (427)
                      +|+.|+++.+.-.. ...    .+..+++|++|+++.+.-..   .    .|.  ....+|+.+.+.+-  .|.-.+   
T Consensus       222 ~L~~L~L~~N~l~~-~~~----~~~~l~~L~~L~Ls~N~l~~---~----~p~~l~~l~~L~~L~Ls~N~l~~~ip~---  286 (313)
T 1ogq_A          222 NTQKIHLAKNSLAF-DLG----KVGLSKNLNGLDLRNNRIYG---T----LPQGLTQLKFLHSLNVSFNNLCGEIPQ---  286 (313)
T ss_dssp             CCSEEECCSSEECC-BGG----GCCCCTTCCEEECCSSCCEE---C----CCGGGGGCTTCCEEECCSSEEEEECCC---
T ss_pred             CCCEEECCCCceee-ecC----cccccCCCCEEECcCCcccC---c----CChHHhcCcCCCEEECcCCcccccCCC---
Confidence            88888875432221 111    14567888888887553211   1    111  12456777777653  222111   


Q ss_pred             HHHHHhccccccceEEE
Q 014317          376 AQYLFQNATMLEKLIIE  392 (427)
Q Consensus       376 ~~~ll~~a~~L~~l~i~  392 (427)
                         . .+.+.|+.+.+.
T Consensus       287 ---~-~~l~~L~~l~l~  299 (313)
T 1ogq_A          287 ---G-GNLQRFDVSAYA  299 (313)
T ss_dssp             ---S-TTGGGSCGGGTC
T ss_pred             ---C-ccccccChHHhc
Confidence               1 345666666554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.40  E-value=1.3e-08  Score=97.72  Aligned_cols=181  Identities=14%  Similarity=0.174  Sum_probs=118.7

Q ss_pred             CCCCCCcEEEEeeEEeChh---hHHHHHhcCCccceeeeccCCCcee--EEEec---Cc---------cccceEEEEecC
Q 014317          157 SGIKFLRCLHFKTVNVNGK---DIELFIQNCPLLDRLCVDHSKTLVR--LRVIG---SS---------IQLKYLEIQSCY  219 (427)
Q Consensus       157 ~~~~~L~~L~L~~~~~~~~---~l~~ll~~cp~Le~L~l~~c~~~~~--l~i~~---~~---------~~L~~L~l~~c~  219 (427)
                      ..+++|++|+|+++.+.+.   .+...+..||.|+.|+|.+|.....  ..+..   .+         ++|++|.+++|.
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            5778999999999888764   3555678899999999988864210  01111   11         689999998876


Q ss_pred             Cc-cEEE------EECCceeEEEEeeeeee------e---eccCCcccceeeeeecccccc-chhhccccccCCCceEEE
Q 014317          220 LM-EEIE------ISAPSLLSFRYYGQAIK------I---NIENVPQLVDVSIRGSHTFRV-TYFVGPIISCFPQLKTLE  282 (427)
Q Consensus       220 ~l-~~~~------i~~p~L~~L~~~~~~~~------~---~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~~~~l~~L~  282 (427)
                      -- ..+.      -..++|++|.+.++.+.      .   .+..++.|+.+.+..+..... ...+...+..+++|+.|.
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~  250 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  250 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence            21 1111      13579999998877443      1   456788999999988773210 123444567899999999


Q ss_pred             Eeccceee------ccccc--CCCCceeEEEEEEEccCCCChHHHHHHH-HhCCCccEEEEEecc
Q 014317          283 LDSCNEVY------MQFSL--FELPKLIDLRLRVTTPNRESLLGLTCIM-KACPFLQKLILQLND  338 (427)
Q Consensus       283 l~~~~~~~------~~~~~--~~~~~L~~L~l~~~~~~~~~~~~l~~ll-~~~p~L~~L~i~~~~  338 (427)
                      |++| .+.      ++..+  ..+++|++|+|+.+.-.......+...+ .++|+|+.|+++++.
T Consensus       251 L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          251 LNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             CTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             CCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            9984 343      23444  3388999999854322221222355555 668999999998654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.37  E-value=2.7e-06  Score=90.08  Aligned_cols=101  Identities=17%  Similarity=0.109  Sum_probs=52.2

Q ss_pred             CceeEEEEeeeee----eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCCCcee
Q 014317          229 PSLLSFRYYGQAI----KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKLI  302 (427)
Q Consensus       229 p~L~~L~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~  302 (427)
                      ++|+.|+++++..    +..+..++.|+.+.+..+...   ......+..+++|+.|++++ +.+.  .+..+..+++|+
T Consensus       266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~---~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~  341 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN---KIADEAFYGLDNLQVLNLSY-NLLGELYSSNFYGLPKVA  341 (844)
T ss_dssp             SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCC---EECTTTTTTCSSCCEEEEES-CCCSCCCSCSCSSCTTCC
T ss_pred             CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCC---CCChHHhcCCCCCCEEECCC-CCCCccCHHHhcCCCCCC
Confidence            5677777665432    223456677777777766532   22223345666777777766 3332  234445556666


Q ss_pred             EEEEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317          303 DLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLN  337 (427)
Q Consensus       303 ~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  337 (427)
                      .|+++.+.-....    ...+..+++|+.|+++.+
T Consensus       342 ~L~L~~N~i~~~~----~~~~~~l~~L~~L~Ls~N  372 (844)
T 3j0a_A          342 YIDLQKNHIAIIQ----DQTFKFLEKLQTLDLRDN  372 (844)
T ss_dssp             EEECCSCCCCCCC----SSCSCSCCCCCEEEEETC
T ss_pred             EEECCCCCCCccC----hhhhcCCCCCCEEECCCC
Confidence            6666432211100    011245566666666544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.35  E-value=4.4e-08  Score=91.20  Aligned_cols=88  Identities=16%  Similarity=0.040  Sum_probs=52.3

Q ss_pred             hcCCceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEeeEEeChh--hHHHHHh-cCCccceeeeccCC
Q 014317          120 LGKRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVNGK--DIELFIQ-NCPLLDRLCVDHSK  196 (427)
Q Consensus       120 ~~~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~~--~l~~ll~-~cp~Le~L~l~~c~  196 (427)
                      .-.++++|++......    ..+|..+|        +..+++|++|+|.++.+.+.  .+..+.. ..+.|++|++.++.
T Consensus        93 ~l~~L~~L~L~~n~l~----~~~~~~~~--------~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~  160 (312)
T 1wwl_A           93 GISGLQELTLENLEVT----GTAPPPLL--------EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH  160 (312)
T ss_dssp             TTSCCCEEEEEEEBCB----SCCCCCSS--------SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS
T ss_pred             CcCCccEEEccCCccc----chhHHHHH--------HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC
Confidence            4468899999876321    12232211        16788999999999887653  3333221 13889999998875


Q ss_pred             CceeE-EEecCccccceEEEEecC
Q 014317          197 TLVRL-RVIGSSIQLKYLEIQSCY  219 (427)
Q Consensus       197 ~~~~l-~i~~~~~~L~~L~l~~c~  219 (427)
                      ..... ..-..+++|+.|.++++.
T Consensus       161 l~~~~~~~~~~l~~L~~L~Ls~N~  184 (312)
T 1wwl_A          161 SLNFSCEQVRVFPALSTLDLSDNP  184 (312)
T ss_dssp             CCCCCTTTCCCCSSCCEEECCSCT
T ss_pred             CccchHHHhccCCCCCEEECCCCC
Confidence            43211 111134677777777665

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.34  E-value=4.1e-08  Score=92.23  Aligned_cols=82  Identities=12%  Similarity=0.154  Sum_probs=47.5

Q ss_pred             CCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEE----ECCc
Q 014317          155 GLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEI----SAPS  230 (427)
Q Consensus       155 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i----~~p~  230 (427)
                      .+..+++|++|+|.++.+..-. ...+..++.|+.|++.++.... +... ..++|++|.++++. +..+..    ..++
T Consensus        73 ~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~-l~~~-~~~~L~~L~l~~n~-i~~~~~~~~~~l~~  148 (332)
T 2ft3_A           73 DFKGLQHLYALVLVNNKISKIH-EKAFSPLRKLQKLYISKNHLVE-IPPN-LPSSLVELRIHDNR-IRKVPKGVFSGLRN  148 (332)
T ss_dssp             TTTTCTTCCEEECCSSCCCEEC-GGGSTTCTTCCEEECCSSCCCS-CCSS-CCTTCCEEECCSSC-CCCCCSGGGSSCSS
T ss_pred             HhhCCCCCcEEECCCCccCccC-HhHhhCcCCCCEEECCCCcCCc-cCcc-ccccCCEEECCCCc-cCccCHhHhCCCcc
Confidence            4567788888888877654321 1125667888888887764321 1111 11577777777664 333221    2367


Q ss_pred             eeEEEEeeee
Q 014317          231 LLSFRYYGQA  240 (427)
Q Consensus       231 L~~L~~~~~~  240 (427)
                      |+.|++.+..
T Consensus       149 L~~L~l~~n~  158 (332)
T 2ft3_A          149 MNCIEMGGNP  158 (332)
T ss_dssp             CCEEECCSCC
T ss_pred             CCEEECCCCc
Confidence            7777776553

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.33  E-value=2e-07  Score=86.55  Aligned_cols=185  Identities=16%  Similarity=0.162  Sum_probs=120.4

Q ss_pred             CCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEE-E-ECCceeEE
Q 014317          157 SGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIE-I-SAPSLLSF  234 (427)
Q Consensus       157 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~-i-~~p~L~~L  234 (427)
                      ..+++|++|++.++.+..-  . -+..++.|+.|++.+|....... -..+++|+.|.++++. +..+. + ..++|++|
T Consensus        38 ~~l~~L~~L~l~~~~i~~l--~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L  112 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTI--E-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTL  112 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEE
T ss_pred             HHcCCcCEEEeeCCCccCc--h-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEE
Confidence            3578999999998876542  1 16779999999999885432111 3356899999999876 44332 1 14788999


Q ss_pred             EEeeeeeee--eccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeEEEEEEEcc
Q 014317          235 RYYGQAIKI--NIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLRVTTP  311 (427)
Q Consensus       235 ~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~  311 (427)
                      +++++....  .+..++.|+.+++..+....+.    . +..+++|+.|.++++ .+. .+. +..+++|++|+++.+.-
T Consensus       113 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~----~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          113 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS----P-LAGLTNLQYLSIGNA-QVSDLTP-LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             ECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCG----G-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred             ECCCCCCCCchhhcCCCCCCEEECCCCccCcCc----c-ccCCCCccEEEccCC-cCCCChh-hcCCCCCCEEECCCCcc
Confidence            888764321  2567888888888877643311    1 567888999999873 444 333 67778888888854322


Q ss_pred             CCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEece
Q 014317          312 NRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGF  366 (427)
Q Consensus       312 ~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f  366 (427)
                      .  +...    +..+++|+.|+++.+.-....       +-....+|+.+.+.+-
T Consensus       186 ~--~~~~----l~~l~~L~~L~L~~N~l~~~~-------~l~~l~~L~~L~l~~N  227 (308)
T 1h6u_A          186 S--DISP----LASLPNLIEVHLKNNQISDVS-------PLANTSNLFIVTLTNQ  227 (308)
T ss_dssp             C--CCGG----GGGCTTCCEEECTTSCCCBCG-------GGTTCTTCCEEEEEEE
T ss_pred             C--cChh----hcCCCCCCEEEccCCccCccc-------cccCCCCCCEEEccCC
Confidence            2  2211    578889999988765322111       1123457777777664

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.32  E-value=8.4e-07  Score=89.11  Aligned_cols=180  Identities=12%  Similarity=0.089  Sum_probs=118.1

Q ss_pred             CCCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCce--eEEEecCccccceEEEEecCCccEEEE----E
Q 014317          154 RGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLV--RLRVIGSSIQLKYLEIQSCYLMEEIEI----S  227 (427)
Q Consensus       154 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~--~l~i~~~~~~L~~L~l~~c~~l~~~~i----~  227 (427)
                      ..+..+++|++|+|+++.+.+-. ...++.+++|+.|++.++....  ....-..+++|+.|.++++..+..+..    .
T Consensus        68 ~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~  146 (549)
T 2z81_A           68 DAFYSLGSLEHLDLSDNHLSSLS-SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG  146 (549)
T ss_dssp             TTTTTCTTCCEEECTTSCCCSCC-HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred             hhccccccCCEEECCCCccCccC-HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhc
Confidence            34678899999999998876532 2236789999999999886432  112223468999999999875555431    1


Q ss_pred             CCceeEEEEeeeee----eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-c---c-cccCCC
Q 014317          228 APSLLSFRYYGQAI----KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-M---Q-FSLFEL  298 (427)
Q Consensus       228 ~p~L~~L~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~---~-~~~~~~  298 (427)
                      .++|++|++.++..    +..+..++.|+.+++..+....   ....+...+++++.|.+++ ..+. .   + .....+
T Consensus       147 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~---~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~  222 (549)
T 2z81_A          147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF---LLEIFADILSSVRYLELRD-TNLARFQFSPLPVDEVS  222 (549)
T ss_dssp             CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT---HHHHHHHSTTTBSEEEEES-CBCTTCCCCCCSSCCCC
T ss_pred             ccccCeeeccCCcccccChhhhhccccCceEecccCcccc---cchhhHhhcccccEEEccC-Cccccccccccchhhhh
Confidence            48899999987643    2345667888888887766322   2223345689999999997 3333 1   1 122456


Q ss_pred             CceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEecc
Q 014317          299 PKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLND  338 (427)
Q Consensus       299 ~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~  338 (427)
                      ++|++|.+..+.-.......+...+..+++|+.|++..+.
T Consensus       223 ~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~  262 (549)
T 2z81_A          223 SPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT  262 (549)
T ss_dssp             CCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred             hcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence            7888888854422222333445556678888888887653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.30  E-value=4.1e-06  Score=83.49  Aligned_cols=79  Identities=15%  Similarity=0.120  Sum_probs=42.1

Q ss_pred             CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCce-eE-EEecCccccceEEEEecCCccEEEE-ECCce-
Q 014317          156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLV-RL-RVIGSSIQLKYLEIQSCYLMEEIEI-SAPSL-  231 (427)
Q Consensus       156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~-~l-~i~~~~~~L~~L~l~~c~~l~~~~i-~~p~L-  231 (427)
                      +..+++|++|+|+++.+..  +...  .++.|++|++.++.... .+ ..-..+++|++|.++++. +....+ ..++| 
T Consensus        65 ~~~l~~L~~L~Ls~N~l~~--lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~L~  139 (520)
T 2z7x_B           65 FKFNQELEYLDLSHNKLVK--ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEKSSVLPIAHLN  139 (520)
T ss_dssp             GTTCTTCCEEECCSSCCCE--EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCGGGGGGGTTSC
T ss_pred             hhcccCCCEEecCCCceee--cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cchhhccccccce
Confidence            4566777777777765542  1110  56777777777765322 11 111234677777777665 221111 12455 


Q ss_pred             -eEEEEeee
Q 014317          232 -LSFRYYGQ  239 (427)
Q Consensus       232 -~~L~~~~~  239 (427)
                       +.|++.++
T Consensus       140 L~~L~l~~n  148 (520)
T 2z7x_B          140 ISKVLLVLG  148 (520)
T ss_dssp             EEEEEEEEC
T ss_pred             eeEEEeecc
Confidence             77777654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.30  E-value=1e-07  Score=86.80  Aligned_cols=61  Identities=13%  Similarity=0.072  Sum_probs=38.7

Q ss_pred             CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEE-EecCccccceEEEEecC
Q 014317          156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLR-VIGSSIQLKYLEIQSCY  219 (427)
Q Consensus       156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~-i~~~~~~L~~L~l~~c~  219 (427)
                      +..+++|+.|+|.++.+.+-.   -+..++.|+.|++.+|....... .-..+++|+.|.++++.
T Consensus        59 l~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  120 (272)
T 3rfs_A           59 IQYLPNVRYLALGGNKLHDIS---ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ  120 (272)
T ss_dssp             GGGCTTCCEEECTTSCCCCCG---GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             cccCCCCcEEECCCCCCCCch---hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc
Confidence            457788888888887765421   35678888888888775322110 01234667777776654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.29  E-value=2.7e-07  Score=90.59  Aligned_cols=218  Identities=16%  Similarity=0.118  Sum_probs=139.8

Q ss_pred             cCCceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCcee
Q 014317          121 GKRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVR  200 (427)
Q Consensus       121 ~~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~  200 (427)
                      -..++.|++......     .          +| .+..+++|++|+|.++.+.+-.    ++.++.|+.|++.++.-.+ 
T Consensus        41 l~~L~~L~Ls~n~l~-----~----------~~-~l~~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~N~l~~-   99 (457)
T 3bz5_A           41 LATLTSLDCHNSSIT-----D----------MT-GIEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSNKLTN-   99 (457)
T ss_dssp             HTTCCEEECCSSCCC-----C----------CT-TGGGCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSC-
T ss_pred             cCCCCEEEccCCCcc-----c----------Ch-hhcccCCCCEEEccCCcCCeEc----cccCCCCCEEECcCCCCce-
Confidence            357777777654211     1          22 3568899999999998876632    6778999999998886333 


Q ss_pred             EEEecCccccceEEEEecCCccEEEEE-CCceeEEEEeeeee-eeeccCCcccceeeeeeccccccchhhccccccCCCc
Q 014317          201 LRVIGSSIQLKYLEIQSCYLMEEIEIS-APSLLSFRYYGQAI-KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQL  278 (427)
Q Consensus       201 l~i~~~~~~L~~L~l~~c~~l~~~~i~-~p~L~~L~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l  278 (427)
                      +.+ ..+++|+.|.++++. +..+.+. .++|++|++.++.. ...+..++.|+.+++..+....  . +  -+..+++|
T Consensus       100 ~~~-~~l~~L~~L~L~~N~-l~~l~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~--~-~--~~~~l~~L  172 (457)
T 3bz5_A          100 LDV-TPLTKLTYLNCDTNK-LTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKIT--K-L--DVTPQTQL  172 (457)
T ss_dssp             CCC-TTCTTCCEEECCSSC-CSCCCCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCC--C-C--CCTTCTTC
T ss_pred             eec-CCCCcCCEEECCCCc-CCeecCCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccc--c-c--ccccCCcC
Confidence            233 346889999998875 5544443 38899998877643 2346778888888887764211  1 1  14678899


Q ss_pred             eEEEEeccceee-cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCC
Q 014317          279 KTLELDSCNEVY-MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQH  357 (427)
Q Consensus       279 ~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~  357 (427)
                      +.|++++ ..+. ++  +..+++|+.|.++.+.-..  .     -+..+++|+.|+++.+.-..        +|-....+
T Consensus       173 ~~L~ls~-n~l~~l~--l~~l~~L~~L~l~~N~l~~--~-----~l~~l~~L~~L~Ls~N~l~~--------ip~~~l~~  234 (457)
T 3bz5_A          173 TTLDCSF-NKITELD--VSQNKLLNRLNCDTNNITK--L-----DLNQNIQLTFLDCSSNKLTE--------IDVTPLTQ  234 (457)
T ss_dssp             CEEECCS-SCCCCCC--CTTCTTCCEEECCSSCCSC--C-----CCTTCTTCSEEECCSSCCSC--------CCCTTCTT
T ss_pred             CEEECCC-Cccceec--cccCCCCCEEECcCCcCCe--e-----ccccCCCCCEEECcCCcccc--------cCccccCC
Confidence            9999987 4444 33  5677889998885432222  1     15678999999997654222        22224567


Q ss_pred             ccEEEEeceecCccHHHHHHHHHhccccccceEE
Q 014317          358 LKVVELHGFLGRQFDVELAQYLFQNATMLEKLII  391 (427)
Q Consensus       358 L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i  391 (427)
                      |+.+.+.+-.-...       -+...+.|+.+.+
T Consensus       235 L~~L~l~~N~l~~~-------~~~~l~~L~~L~l  261 (457)
T 3bz5_A          235 LTYFDCSVNPLTEL-------DVSTLSKLTTLHC  261 (457)
T ss_dssp             CSEEECCSSCCSCC-------CCTTCTTCCEEEC
T ss_pred             CCEEEeeCCcCCCc-------CHHHCCCCCEEec
Confidence            88888776432111       1345566665544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.28  E-value=7e-08  Score=87.97  Aligned_cols=59  Identities=14%  Similarity=0.153  Sum_probs=39.9

Q ss_pred             CCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecC
Q 014317          157 SGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCY  219 (427)
Q Consensus       157 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~  219 (427)
                      ..+++|+.|.+.++.+..-.   -+..+|.|+.|++.++...+ +..-..+++|++|.++++.
T Consensus        38 ~~l~~L~~L~l~~~~i~~~~---~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~   96 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSVQ---GIQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILTGNQ   96 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCCT---TGGGCTTCCEEECTTSCCCC-CGGGTTCTTCCEEECTTSC
T ss_pred             ccccceeeeeeCCCCccccc---ccccCCCCcEEECCCCCCCC-chhhcCCCCCCEEECCCCc
Confidence            45788999999887765421   16679999999999886332 1111245677777777664

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.28  E-value=2.7e-07  Score=96.71  Aligned_cols=103  Identities=16%  Similarity=0.219  Sum_probs=66.4

Q ss_pred             CCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCCccEEEE----ECCcee
Q 014317          158 GIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYLMEEIEI----SAPSLL  232 (427)
Q Consensus       158 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~~~i----~~p~L~  232 (427)
                      .+++|++|+|.++.+.+..-..+...|+.|+.|++.+|...+.+ ..-..+++|++|.++++.-...+..    ..++|+
T Consensus       267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~  346 (768)
T 3rgz_A          267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK  346 (768)
T ss_dssp             CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred             ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence            78999999999988764322222344799999999988533211 1112458899999988762223321    248999


Q ss_pred             EEEEeeeeee----eeccCCc-ccceeeeeecc
Q 014317          233 SFRYYGQAIK----INIENVP-QLVDVSIRGSH  260 (427)
Q Consensus       233 ~L~~~~~~~~----~~~~~~~-~L~~l~l~~~~  260 (427)
                      +|++.++...    ..+.+++ .|+.+++..+.
T Consensus       347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~  379 (768)
T 3rgz_A          347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNN  379 (768)
T ss_dssp             EEECCSSEEEECCCTTHHHHTTTCSEEECCSSE
T ss_pred             EEeCcCCccCccccHHHHhhhcCCcEEEccCCC
Confidence            9999877543    2233344 67777776654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.27  E-value=7.4e-08  Score=89.54  Aligned_cols=109  Identities=13%  Similarity=0.032  Sum_probs=65.7

Q ss_pred             eeEEEEEEecCCCCCccHHHHHHHHhcCCceEEEEEecCCCCCccccccccccccccCCCCC--CCCCCCcEEEEeeEEe
Q 014317           95 INEFKVRFDLCDFHQSDITNWVYTVLGKRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGL--SGIKFLRCLHFKTVNV  172 (427)
Q Consensus        95 l~~l~l~~~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~--~~~~~L~~L~L~~~~~  172 (427)
                      ++.+.+.-  .......+...........+++|.+......    ...|          ..+  ..+++|++|+|.++.+
T Consensus        66 l~~l~l~~--~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~----~~~~----------~~~~~~~~~~L~~L~Ls~n~i  129 (310)
T 4glp_A           66 VRRLTVGA--AQVPAQLLVGALRVLAYSRLKELTLEDLKIT----GTMP----------PLPLEATGLALSSLRLRNVSW  129 (310)
T ss_dssp             CCEEEECS--CCCBHHHHHHHHHHHHHSCCCEEEEESCCCB----SCCC----------CCSSSCCCBCCSSCEEESCCC
T ss_pred             eeEEEEeC--CcCCHHHHHHHHHhcccCceeEEEeeCCEec----cchh----------hhhhhccCCCCCEEEeecccc
Confidence            56665532  1222234555555555567999999876321    1122          223  6789999999999988


Q ss_pred             Chh--hHH-HHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecC
Q 014317          173 NGK--DIE-LFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCY  219 (427)
Q Consensus       173 ~~~--~l~-~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~  219 (427)
                      ...  .+. .-+..+|.|+.|++.++...... ..-..+++|++|.++++.
T Consensus       130 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  180 (310)
T 4glp_A          130 ATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNP  180 (310)
T ss_dssp             SSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCT
T ss_pred             cchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCC
Confidence            752  122 22347999999999988643211 111134677777777665

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.26  E-value=1.1e-07  Score=89.19  Aligned_cols=190  Identities=18%  Similarity=0.206  Sum_probs=98.4

Q ss_pred             CCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEE----ECCc
Q 014317          155 GLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEI----SAPS  230 (427)
Q Consensus       155 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i----~~p~  230 (427)
                      .+..+++|++|+|.++.+..-. ...+..++.|+.|++.++.... +... ..++|++|.++++. +..+..    ..++
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~-l~~~-~~~~L~~L~l~~n~-l~~~~~~~~~~l~~  146 (330)
T 1xku_A           71 DFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQLKE-LPEK-MPKTLQELRVHENE-ITKVRKSVFNGLNQ  146 (330)
T ss_dssp             TTTTCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCCSB-CCSS-CCTTCCEEECCSSC-CCBBCHHHHTTCTT
T ss_pred             hhccCCCCCEEECCCCcCCeeC-HHHhcCCCCCCEEECCCCcCCc-cChh-hcccccEEECCCCc-ccccCHhHhcCCcc
Confidence            3566777777777766554211 1114567777777777664221 1101 11567777776654 332211    1366


Q ss_pred             eeEEEEeeeeee------eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCCCcee
Q 014317          231 LLSFRYYGQAIK------INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKLI  302 (427)
Q Consensus       231 L~~L~~~~~~~~------~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~  302 (427)
                      |+.|++.++...      ..+.+++.|+.+.+..+....+.   .   ...++|+.|++++ ..+.  .+..+..+++|+
T Consensus       147 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~---~---~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~  219 (330)
T 1xku_A          147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP---Q---GLPPSLTELHLDG-NKITKVDAASLKGLNNLA  219 (330)
T ss_dssp             CCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC---S---SCCTTCSEEECTT-SCCCEECTGGGTTCTTCC
T ss_pred             ccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC---c---cccccCCEEECCC-CcCCccCHHHhcCCCCCC
Confidence            777776655321      23445666777766655422111   1   1226777777776 3333  344556677777


Q ss_pred             EEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEec
Q 014317          303 DLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHG  365 (427)
Q Consensus       303 ~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~  365 (427)
                      +|+++.+.-....    ...+..+++|+.|+++.+.-......    +  ....+|+.+.+.+
T Consensus       220 ~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~lp~~----l--~~l~~L~~L~l~~  272 (330)
T 1xku_A          220 KLGLSFNSISAVD----NGSLANTPHLRELHLNNNKLVKVPGG----L--ADHKYIQVVYLHN  272 (330)
T ss_dssp             EEECCSSCCCEEC----TTTGGGSTTCCEEECCSSCCSSCCTT----T--TTCSSCCEEECCS
T ss_pred             EEECCCCcCceeC----hhhccCCCCCCEEECCCCcCccCChh----h--ccCCCcCEEECCC
Confidence            7777433211101    11345677888888765532211110    1  1245677777764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.25  E-value=5.7e-08  Score=102.35  Aligned_cols=37  Identities=16%  Similarity=0.065  Sum_probs=18.9

Q ss_pred             CCCCCcEEEEeeEEeChhhHHH--HHhcCCccceeeeccCC
Q 014317          158 GIKFLRCLHFKTVNVNGKDIEL--FIQNCPLLDRLCVDHSK  196 (427)
Q Consensus       158 ~~~~L~~L~L~~~~~~~~~l~~--ll~~cp~Le~L~l~~c~  196 (427)
                      .+++|+.|+|.++.+.  .+..  .+..+++|+.|++.++.
T Consensus       546 ~l~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~  584 (876)
T 4ecn_A          546 TGPKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHNK  584 (876)
T ss_dssp             TTTTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTSC
T ss_pred             ccCCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCCC
Confidence            3446666666655544  2222  34555566666665543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.24  E-value=1.2e-07  Score=86.37  Aligned_cols=152  Identities=15%  Similarity=0.147  Sum_probs=67.8

Q ss_pred             CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCCccEEEEECCceeEEEEee
Q 014317          160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYYG  238 (427)
Q Consensus       160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~~~~  238 (427)
                      ++|++|+|.++.+..-. ...+..++.|+.|++.++...... .+-..+++|+.|.++++. +..+..            
T Consensus        37 ~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~------------  102 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPI------------  102 (270)
T ss_dssp             TTCSEEECCSSCCSCCC-TTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCCT------------
T ss_pred             CCCCEEECcCCCCCeeC-HHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCCH------------
Confidence            56777777776554311 012456777777777665422100 000123555666555443 221110            


Q ss_pred             eeeeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-ccc-ccCCCCceeEEEEEEEccCCCCh
Q 014317          239 QAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQF-SLFELPKLIDLRLRVTTPNRESL  316 (427)
Q Consensus       239 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~-~~~~~~~L~~L~l~~~~~~~~~~  316 (427)
                          ..+..++.|+.+.+..+....   .....+..+++|+.|++++ ..+. .+. .+..+++|++|+++.+.-.... 
T Consensus       103 ----~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-  173 (270)
T 2o6q_A          103 ----GVFDQLVNLAELRLDRNQLKS---LPPRVFDSLTKLTYLSLGY-NELQSLPKGVFDKLTSLKELRLYNNQLKRVP-  173 (270)
T ss_dssp             ----TTTTTCSSCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-
T ss_pred             ----hHcccccCCCEEECCCCccCe---eCHHHhCcCcCCCEEECCC-CcCCccCHhHccCCcccceeEecCCcCcEeC-
Confidence                012334445555554443211   1122234556666666665 3333 222 2345556666665322111100 


Q ss_pred             HHHHHHHHhCCCccEEEEEec
Q 014317          317 LGLTCIMKACPFLQKLILQLN  337 (427)
Q Consensus       317 ~~l~~ll~~~p~L~~L~i~~~  337 (427)
                         ...+..+++|++|+++.+
T Consensus       174 ---~~~~~~l~~L~~L~L~~N  191 (270)
T 2o6q_A          174 ---EGAFDKLTELKTLKLDNN  191 (270)
T ss_dssp             ---TTTTTTCTTCCEEECCSS
T ss_pred             ---hhHhccCCCcCEEECCCC
Confidence               012345566666666543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.24  E-value=2e-07  Score=87.38  Aligned_cols=169  Identities=18%  Similarity=0.148  Sum_probs=70.7

Q ss_pred             CCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCCccE--EE----EE
Q 014317          155 GLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYLMEE--IE----IS  227 (427)
Q Consensus       155 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~--~~----i~  227 (427)
                      .+..+++|++|+|.++.+..-.    ....+.|+.|++.++...... ..-..+++|+.|.++++.- ..  +.    -.
T Consensus        95 ~~~~l~~L~~L~Ls~n~l~~l~----~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~~  169 (330)
T 1xku_A           95 AFAPLVKLERLYLSKNQLKELP----EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL-KSSGIENGAFQG  169 (330)
T ss_dssp             TTTTCTTCCEEECCSSCCSBCC----SSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCC-CGGGBCTTGGGG
T ss_pred             HhcCCCCCCEEECCCCcCCccC----hhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcC-CccCcChhhccC
Confidence            3455566666666555443210    011255666666555322110 0011235556665555431 10  00    01


Q ss_pred             CCceeEEEEeeeeeeee-ccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCCCceeEE
Q 014317          228 APSLLSFRYYGQAIKIN-IENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKLIDL  304 (427)
Q Consensus       228 ~p~L~~L~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~~L  304 (427)
                      .++|++|++.++..... ..-.+.|+.+++..+....   .....+..+++|+.|++++ +.+.  .+..+..+++|++|
T Consensus       170 l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L  245 (330)
T 1xku_A          170 MKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITK---VDAASLKGLNNLAKLGLSF-NSISAVDNGSLANTPHLREL  245 (330)
T ss_dssp             CTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCE---ECTGGGTTCTTCCEEECCS-SCCCEECTTTGGGSTTCCEE
T ss_pred             CCCcCEEECCCCccccCCccccccCCEEECCCCcCCc---cCHHHhcCCCCCCEEECCC-CcCceeChhhccCCCCCCEE
Confidence            35556665554432111 1112455555555444211   1122234555666666655 2222  22234455556665


Q ss_pred             EEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317          305 RLRVTTPNRESLLGLTCIMKACPFLQKLILQLN  337 (427)
Q Consensus       305 ~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  337 (427)
                      +++.+.-.     .++..+..+++|+.|+++.+
T Consensus       246 ~L~~N~l~-----~lp~~l~~l~~L~~L~l~~N  273 (330)
T 1xku_A          246 HLNNNKLV-----KVPGGLADHKYIQVVYLHNN  273 (330)
T ss_dssp             ECCSSCCS-----SCCTTTTTCSSCCEEECCSS
T ss_pred             ECCCCcCc-----cCChhhccCCCcCEEECCCC
Confidence            55332111     11122345566666666543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.24  E-value=8.2e-07  Score=90.29  Aligned_cols=91  Identities=13%  Similarity=0.035  Sum_probs=43.9

Q ss_pred             CCceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE
Q 014317          122 KRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL  201 (427)
Q Consensus       122 ~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l  201 (427)
                      .+++.|.+..+...     .+|          .   .+++|++|+|+++.+..  +.   ...++|+.|++.++....  
T Consensus        61 ~~L~~L~L~~N~l~-----~lp----------~---~l~~L~~L~Ls~N~l~~--lp---~~l~~L~~L~Ls~N~l~~--  115 (622)
T 3g06_A           61 AHITTLVIPDNNLT-----SLP----------A---LPPELRTLEVSGNQLTS--LP---VLPPGLLELSIFSNPLTH--  115 (622)
T ss_dssp             TTCSEEEECSCCCS-----CCC----------C---CCTTCCEEEECSCCCSC--CC---CCCTTCCEEEECSCCCCC--
T ss_pred             CCCcEEEecCCCCC-----CCC----------C---cCCCCCEEEcCCCcCCc--CC---CCCCCCCEEECcCCcCCC--
Confidence            57888888765321     223          1   34666666666665442  11   145666666666553221  


Q ss_pred             EEecCccccceEEEEecCCccEEEEECCceeEEEEeee
Q 014317          202 RVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYYGQ  239 (427)
Q Consensus       202 ~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~~~~~  239 (427)
                       +....++|+.|.++++. +..+....++|++|+++++
T Consensus       116 -l~~~l~~L~~L~L~~N~-l~~lp~~l~~L~~L~Ls~N  151 (622)
T 3g06_A          116 -LPALPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSDN  151 (622)
T ss_dssp             -CCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS
T ss_pred             -CCCCCCCcCEEECCCCC-CCcCCCCCCCCCEEECcCC
Confidence             01122455555554443 3322222345555555444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.24  E-value=7.1e-07  Score=87.60  Aligned_cols=178  Identities=19%  Similarity=0.141  Sum_probs=127.9

Q ss_pred             CCceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE
Q 014317          122 KRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL  201 (427)
Q Consensus       122 ~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l  201 (427)
                      ++++.|.+....-.     .+|            +..+++|++|+|.++.+.+-.    +..++.|+.|++.++.-.+ +
T Consensus        64 ~~L~~L~Ls~n~l~-----~~~------------~~~l~~L~~L~Ls~N~l~~~~----~~~l~~L~~L~L~~N~l~~-l  121 (457)
T 3bz5_A           64 TGLTKLICTSNNIT-----TLD------------LSQNTNLTYLACDSNKLTNLD----VTPLTKLTYLNCDTNKLTK-L  121 (457)
T ss_dssp             TTCSEEECCSSCCS-----CCC------------CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEECCSSCCSC-C
T ss_pred             CCCCEEEccCCcCC-----eEc------------cccCCCCCEEECcCCCCceee----cCCCCcCCEEECCCCcCCe-e
Confidence            58888888765321     122            568899999999998877643    6789999999999885433 3


Q ss_pred             EEecCccccceEEEEecCCccEEEEE-CCceeEEEEeeee-e-eeeccCCcccceeeeeeccccccchhhccccccCCCc
Q 014317          202 RVIGSSIQLKYLEIQSCYLMEEIEIS-APSLLSFRYYGQA-I-KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQL  278 (427)
Q Consensus       202 ~i~~~~~~L~~L~l~~c~~l~~~~i~-~p~L~~L~~~~~~-~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l  278 (427)
                      .+ ..+++|+.|.++++. +..+.+. .++|++|++.++. . ...+..++.|+.+++..+....+    .  +..++++
T Consensus       122 ~~-~~l~~L~~L~l~~N~-l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l----~--l~~l~~L  193 (457)
T 3bz5_A          122 DV-SQNPLLTYLNCARNT-LTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL----D--VSQNKLL  193 (457)
T ss_dssp             CC-TTCTTCCEEECTTSC-CSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCC----C--CTTCTTC
T ss_pred             cC-CCCCcCCEEECCCCc-cceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcccee----c--cccCCCC
Confidence            32 346899999998876 5555443 4899999998762 2 33567889999999988774331    1  5788999


Q ss_pred             eEEEEeccceeecccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEecc
Q 014317          279 KTLELDSCNEVYMQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLND  338 (427)
Q Consensus       279 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~  338 (427)
                      +.|.+++ ..+... .+..+++|++|+++.+.-.  +   +.  +..+++|+.|+++.+.
T Consensus       194 ~~L~l~~-N~l~~~-~l~~l~~L~~L~Ls~N~l~--~---ip--~~~l~~L~~L~l~~N~  244 (457)
T 3bz5_A          194 NRLNCDT-NNITKL-DLNQNIQLTFLDCSSNKLT--E---ID--VTPLTQLTYFDCSVNP  244 (457)
T ss_dssp             CEEECCS-SCCSCC-CCTTCTTCSEEECCSSCCS--C---CC--CTTCTTCSEEECCSSC
T ss_pred             CEEECcC-CcCCee-ccccCCCCCEEECcCCccc--c---cC--ccccCCCCEEEeeCCc
Confidence            9999997 444421 3677889999998544222  2   22  5789999999998664

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.24  E-value=9.8e-08  Score=87.07  Aligned_cols=121  Identities=13%  Similarity=0.122  Sum_probs=64.2

Q ss_pred             CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEE--ecCccccceEEEEecCCccEEEE----ECCceeE
Q 014317          160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRV--IGSSIQLKYLEIQSCYLMEEIEI----SAPSLLS  233 (427)
Q Consensus       160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~~~~i----~~p~L~~  233 (427)
                      ++|++|+|.++.+.+-.. ..+..++.|+.|++.++.... +..  -..+++|+.|.++++. +..+..    ..++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~  104 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQK  104 (276)
T ss_dssp             TTCCEEECTTCCCCEECT-TTTTTCTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCE
T ss_pred             CCccEEECCCCcccccCH-hHhccccCCcEEECCCCcCCc-cCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccE
Confidence            467888877766543211 124567788888887764321 111  1134667777776654 333321    1256666


Q ss_pred             EEEeeeeee----eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEec
Q 014317          234 FRYYGQAIK----INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDS  285 (427)
Q Consensus       234 L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~  285 (427)
                      |++.++...    ..+..++.|+.+.+..+....  ..+...+..+++|+.|++++
T Consensus       105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~l~~~~~~l~~L~~L~Ls~  158 (276)
T 2z62_A          105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQS--FKLPEYFSNLTNLEHLDLSS  158 (276)
T ss_dssp             EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC--CCCCGGGGGCTTCCEEECCS
T ss_pred             EECCCCCccccCchhcccCCCCCEEECcCCccce--ecCchhhccCCCCCEEECCC
Confidence            666544221    124556666666666554221  01233345667777777766

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.23  E-value=3e-07  Score=84.58  Aligned_cols=192  Identities=19%  Similarity=0.150  Sum_probs=100.4

Q ss_pred             CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEEECCceeEEEEeee
Q 014317          160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYYGQ  239 (427)
Q Consensus       160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~~~~~  239 (427)
                      ++|+.|+|.++.+..-.. ..+..++.|+.|.+.++.... +.....+++|+.|.++++. +..+               
T Consensus        31 ~~l~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~N~-l~~l---------------   92 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSL-ATLMPYTRLTQLNLDRAELTK-LQVDGTLPVLGTLDLSHNQ-LQSL---------------   92 (290)
T ss_dssp             TTCCEEECTTSCCSEEEG-GGGTTCTTCCEEECTTSCCCE-EECCSCCTTCCEEECCSSC-CSSC---------------
T ss_pred             CCCCEEEcCCCcCCccCH-HHhhcCCCCCEEECCCCccCc-ccCCCCCCcCCEEECCCCc-CCcC---------------
Confidence            678888888776543211 125667888888887765322 2222344666666666554 2211               


Q ss_pred             eeeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cc-cccCCCCceeEEEEEEEccCCCChH
Q 014317          240 AIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQ-FSLFELPKLIDLRLRVTTPNRESLL  317 (427)
Q Consensus       240 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~-~~~~~~~~L~~L~l~~~~~~~~~~~  317 (427)
                        +..+..++.|+.+++..+....   .....+..+++|+.|.+++ +.+. .+ ..+..+++|+.|.++.+.-.  ...
T Consensus        93 --~~~~~~l~~L~~L~l~~N~l~~---l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~l~  164 (290)
T 1p9a_G           93 --PLLGQTLPALTVLDVSFNRLTS---LPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLT--ELP  164 (290)
T ss_dssp             --CCCTTTCTTCCEEECCSSCCCC---CCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCS--CCC
T ss_pred             --chhhccCCCCCEEECCCCcCcc---cCHHHHcCCCCCCEEECCC-CCCCccChhhcccccCCCEEECCCCcCC--ccC
Confidence              1223456666666666555221   2223345677777777776 3443 33 33456677777777432111  111


Q ss_pred             HHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEecee--cCccHHHHHHHHHhcccc
Q 014317          318 GLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFL--GRQFDVELAQYLFQNATM  385 (427)
Q Consensus       318 ~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f~--g~~~e~~~~~~ll~~a~~  385 (427)
                        ...+..+++|+.|.++.+.-...+..      -....+|+.+.+.+-.  ..+....+..++-++...
T Consensus       165 --~~~~~~l~~L~~L~L~~N~l~~ip~~------~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl~~~~~~  226 (290)
T 1p9a_G          165 --AGLLNGLENLDTLLLQENSLYTIPKG------FFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAEN  226 (290)
T ss_dssp             --TTTTTTCTTCCEEECCSSCCCCCCTT------TTTTCCCSEEECCSCCBCCSGGGHHHHHHHHHTGGG
T ss_pred             --HHHhcCcCCCCEEECCCCcCCccChh------hcccccCCeEEeCCCCccCcCccHHHHHHHHhCccc
Confidence              12345677888888765432211111      1123367777776532  233334555566555443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.21  E-value=1.5e-07  Score=89.52  Aligned_cols=63  Identities=6%  Similarity=0.066  Sum_probs=35.3

Q ss_pred             CCCC-CCcEEEEeeEEeChh---hHHHHHhcC-CccceeeeccCCCceeE-E-Ee---cCc-cccceEEEEecC
Q 014317          157 SGIK-FLRCLHFKTVNVNGK---DIELFIQNC-PLLDRLCVDHSKTLVRL-R-VI---GSS-IQLKYLEIQSCY  219 (427)
Q Consensus       157 ~~~~-~L~~L~L~~~~~~~~---~l~~ll~~c-p~Le~L~l~~c~~~~~l-~-i~---~~~-~~L~~L~l~~c~  219 (427)
                      ..++ +|++|+|+++.+.+.   .+..++..+ +.|++|++.+|.-.... . +.   ..+ ++|++|.+++|.
T Consensus        47 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  120 (362)
T 3goz_A           47 ANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND  120 (362)
T ss_dssp             HTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred             HhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc
Confidence            3556 777777777776543   344444444 77777777777532210 0 00   011 467777776665

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.19  E-value=8.3e-07  Score=88.57  Aligned_cols=150  Identities=12%  Similarity=0.125  Sum_probs=77.0

Q ss_pred             CCCCCCCcEEEEeeEEeChhhHHHHHh--cCCccceeeeccCCCceeE--EEe----cCccc------------------
Q 014317          156 LSGIKFLRCLHFKTVNVNGKDIELFIQ--NCPLLDRLCVDHSKTLVRL--RVI----GSSIQ------------------  209 (427)
Q Consensus       156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~--~cp~Le~L~l~~c~~~~~l--~i~----~~~~~------------------  209 (427)
                      +..+++|+.|++.++.+.+..+..+..  .++.|+.|++.+|...+.+  .+.    ..++.                  
T Consensus       216 l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~  295 (520)
T 2z7x_B          216 LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI  295 (520)
T ss_dssp             GGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHH
T ss_pred             hccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhh
Confidence            456788888888888887765555443  2678999998877422110  000    12233                  


Q ss_pred             --------cceEEEEecCCccEEE--EECCceeEEEEeeeee----eeeccCCcccceeeeeeccccccchhhccccccC
Q 014317          210 --------LKYLEIQSCYLMEEIE--ISAPSLLSFRYYGQAI----KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCF  275 (427)
Q Consensus       210 --------L~~L~l~~c~~l~~~~--i~~p~L~~L~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~  275 (427)
                              |+.|.++++. +..+.  -..++|++|+++++..    +..+..++.|+.+.+..+....+. .+...+..+
T Consensus       296 ~~~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~~~l  373 (520)
T 2z7x_B          296 YEIFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS-KIAEMTTQM  373 (520)
T ss_dssp             HHHHHTCCCSEEEEESSC-CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH-HHHHHHTTC
T ss_pred             hcccccCceeEEEcCCCc-cccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc-cchHHHhhC
Confidence                    4444444433 11111  1235666666665532    123345666666666655432110 122234566


Q ss_pred             CCceEEEEeccceee-cccc-cCCCCceeEEEEE
Q 014317          276 PQLKTLELDSCNEVY-MQFS-LFELPKLIDLRLR  307 (427)
Q Consensus       276 ~~l~~L~l~~~~~~~-~~~~-~~~~~~L~~L~l~  307 (427)
                      ++|+.|+++++.-.. ++.. +..+++|++|+++
T Consensus       374 ~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls  407 (520)
T 2z7x_B          374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS  407 (520)
T ss_dssp             TTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECC
T ss_pred             CCCCEEECCCCcCCcccccchhccCccCCEEECc
Confidence            667777776522222 3332 3445566666653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.18  E-value=9.2e-08  Score=91.01  Aligned_cols=37  Identities=8%  Similarity=0.007  Sum_probs=23.4

Q ss_pred             CCCcEEEEeeEEeChh---hHHHHHhcC-CccceeeeccCC
Q 014317          160 KFLRCLHFKTVNVNGK---DIELFIQNC-PLLDRLCVDHSK  196 (427)
Q Consensus       160 ~~L~~L~L~~~~~~~~---~l~~ll~~c-p~Le~L~l~~c~  196 (427)
                      ++|++|+|+++.+++.   .+...+..+ +.|+.|++.+|.
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  120 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND  120 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc
Confidence            6777777777766542   344445555 677777777665

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.17  E-value=1.6e-06  Score=77.21  Aligned_cols=188  Identities=13%  Similarity=0.070  Sum_probs=116.1

Q ss_pred             CCceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEeeEE-eChhhHHHHHhcCCccceeeeccCCCcee
Q 014317          122 KRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVN-VNGKDIELFIQNCPLLDRLCVDHSKTLVR  200 (427)
Q Consensus       122 ~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c~~~~~  200 (427)
                      ..++.|.+......     .+|.         ..+..+++|++|+|.++. +..-. ...+..++.|+.|++.+|..+..
T Consensus        31 ~~l~~L~l~~n~l~-----~i~~---------~~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~   95 (239)
T 2xwt_C           31 PSTQTLKLIETHLR-----TIPS---------HAFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTY   95 (239)
T ss_dssp             TTCCEEEEESCCCS-----EECT---------TTTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCE
T ss_pred             CcccEEEEeCCcce-----EECH---------HHccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeE
Confidence            37788888765321     2232         135688999999999875 43210 01256799999999998665554


Q ss_pred             EEEe--cCccccceEEEEecCCccEEEE--ECCcee---EEEEeee-eee----eeccCCcccc-eeeeeeccccccchh
Q 014317          201 LRVI--GSSIQLKYLEIQSCYLMEEIEI--SAPSLL---SFRYYGQ-AIK----INIENVPQLV-DVSIRGSHTFRVTYF  267 (427)
Q Consensus       201 l~i~--~~~~~L~~L~l~~c~~l~~~~i--~~p~L~---~L~~~~~-~~~----~~~~~~~~L~-~l~l~~~~~~~~~~~  267 (427)
                      +...  ..+++|+.|.++++. +..+.-  ..++|+   +|++.+. ...    ..+.+++.|+ .+++..+....+.  
T Consensus        96 i~~~~f~~l~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~--  172 (239)
T 2xwt_C           96 IDPDALKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ--  172 (239)
T ss_dssp             ECTTSEECCTTCCEEEEEEEC-CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEEC--
T ss_pred             cCHHHhCCCCCCCEEeCCCCC-CccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccC--
Confidence            3311  245889999999875 333221  235666   8888876 332    1356788898 9888776532211  


Q ss_pred             hccccccCCCceEEEEeccceee-c-ccccCCC-CceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEe
Q 014317          268 VGPIISCFPQLKTLELDSCNEVY-M-QFSLFEL-PKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQL  336 (427)
Q Consensus       268 ~~~~~~~~~~l~~L~l~~~~~~~-~-~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~  336 (427)
                       ...+.. ++|+.|+++++..+. + +..+..+ ++|+.|+++.+.-.  ....     ..+++|+.|.+..
T Consensus       173 -~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~--~l~~-----~~~~~L~~L~l~~  235 (239)
T 2xwt_C          173 -GYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT--ALPS-----KGLEHLKELIARN  235 (239)
T ss_dssp             -TTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC--CCCC-----TTCTTCSEEECTT
T ss_pred             -HhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc--cCCh-----hHhccCceeeccC
Confidence             122233 789999999843354 4 3445667 89999988543221  1110     2578899988753

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.15  E-value=5.3e-07  Score=81.97  Aligned_cols=64  Identities=16%  Similarity=0.125  Sum_probs=41.2

Q ss_pred             CCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecC
Q 014317          155 GLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCY  219 (427)
Q Consensus       155 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~  219 (427)
                      .+..+++|++|+|.++.+..- ...++..++.|+.|++.++...... ..-..+++|+.|.++++.
T Consensus        56 ~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  120 (270)
T 2o6q_A           56 AFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ  120 (270)
T ss_dssp             SSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSC
T ss_pred             HhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCc
Confidence            467889999999998776531 1123567899999999887533210 111234677777777654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.14  E-value=1.3e-07  Score=88.01  Aligned_cols=37  Identities=22%  Similarity=0.230  Sum_probs=16.9

Q ss_pred             CCCCcEEEEeeEEeChhhHHHH-HhcCCccceeeeccC
Q 014317          159 IKFLRCLHFKTVNVNGKDIELF-IQNCPLLDRLCVDHS  195 (427)
Q Consensus       159 ~~~L~~L~L~~~~~~~~~l~~l-l~~cp~Le~L~l~~c  195 (427)
                      +++|++|+|.++.+.+.....+ +..++.|+.|++.++
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N  131 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV  131 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC
Confidence            4555555555555442211111 144555555555544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.14  E-value=5.8e-07  Score=75.31  Aligned_cols=64  Identities=22%  Similarity=0.110  Sum_probs=38.4

Q ss_pred             ccCCCceEEEEeccceee-cc--cccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEecc
Q 014317          273 SCFPQLKTLELDSCNEVY-MQ--FSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLND  338 (427)
Q Consensus       273 ~~~~~l~~L~l~~~~~~~-~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~  338 (427)
                      ..+++|+.|.+++ +.+. .+  ..+..+++|++|+++.+.-.. ........+..+|+|+.|++..+.
T Consensus        92 ~~l~~L~~L~Ls~-N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A           92 EKLPNLTHLNLSG-NKLKDISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             HHCTTCCEEECBS-SSCCSSGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETT
T ss_pred             hhCCCCCEEeccC-CccCcchhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCC
Confidence            4567777777776 3333 22  455667777777774432211 111112467789999999988764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.12  E-value=2.2e-07  Score=88.05  Aligned_cols=101  Identities=16%  Similarity=0.179  Sum_probs=57.7

Q ss_pred             cHHHHHHHHhcCCceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEeeEEeC--------hhhHHHHHh
Q 014317          111 DITNWVYTVLGKRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVN--------GKDIELFIQ  182 (427)
Q Consensus       111 ~~~~wl~~~~~~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~--------~~~l~~ll~  182 (427)
                      .+.+++.......++.|.+..+. .+....   .....  .+..+...|++|+.|.+..+...        ..++..++.
T Consensus        96 ~~~~fl~~~~~~~v~~L~lg~~~-~~~~~~---~~~~~--~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~  169 (362)
T 2ra8_A           96 LMDKILKDKKLPSLKQITIGXWG-YEGEDC---SDIAD--GIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLD  169 (362)
T ss_dssp             HHHHHHHCTTGGGCSEEEECCCC-SSSCCS---HHHHH--HHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHH
T ss_pred             HHHHHhcCCCchhcceEEEcccc-cCCCcH---HHHHH--HHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHh
Confidence            44455544444568888886542 110000   00000  11223456899999999775432        224778899


Q ss_pred             cCCccceeeeccCCCceeEEEecCccccceEEEEecC
Q 014317          183 NCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCY  219 (427)
Q Consensus       183 ~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~  219 (427)
                      .+|.|++|.|.++.+.....+  .+++|++|.+..|.
T Consensus       170 ~~P~L~~L~L~g~~~l~l~~~--~~~~L~~L~L~~~~  204 (362)
T 2ra8_A          170 AMPLLNNLKIKGTNNLSIGKK--PRPNLKSLEIISGG  204 (362)
T ss_dssp             TCTTCCEEEEECCBTCBCCSC--BCTTCSEEEEECSB
T ss_pred             cCCCCcEEEEeCCCCceeccc--cCCCCcEEEEecCC
Confidence            999999999987743321111  13677777776554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.12  E-value=3.9e-07  Score=83.83  Aligned_cols=147  Identities=20%  Similarity=0.241  Sum_probs=88.5

Q ss_pred             CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEEECCceeEEE
Q 014317          156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFR  235 (427)
Q Consensus       156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~  235 (427)
                      +..+++|++|+|.++.+.+-.-   ++.++.|+.|.+.++.... +.--..+++|+.|.++++. +..+           
T Consensus        64 ~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~-i~~~-----------  127 (291)
T 1h6t_A           64 IQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVKD-LSSLKDLKKLKSLSLEHNG-ISDI-----------  127 (291)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCC-GGGGTTCTTCCEEECTTSC-CCCC-----------
T ss_pred             HhcCCCCCEEEccCCccCCCcc---cccCCCCCEEECCCCcCCC-ChhhccCCCCCEEECCCCc-CCCC-----------
Confidence            4567888888888877654221   6778888888887765322 1111234566666665554 2221           


Q ss_pred             EeeeeeeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeEEEEEEEccCCC
Q 014317          236 YYGQAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLRVTTPNRE  314 (427)
Q Consensus       236 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~  314 (427)
                             -.+..++.|+.++++.+....+     ..+..+++|+.|.+++ +.+. .+. +..+++|++|+++.+.-.  
T Consensus       128 -------~~l~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~L~~-N~l~~~~~-l~~l~~L~~L~L~~N~i~--  191 (291)
T 1h6t_A          128 -------NGLVHLPQLESLYLGNNKITDI-----TVLSRLTKLDTLSLED-NQISDIVP-LAGLTKLQNLYLSKNHIS--  191 (291)
T ss_dssp             -------GGGGGCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCS-SCCCCCGG-GTTCTTCCEEECCSSCCC--
T ss_pred             -------hhhcCCCCCCEEEccCCcCCcc-----hhhccCCCCCEEEccC-Cccccchh-hcCCCccCEEECCCCcCC--
Confidence                   1234566777777766553221     2356788888888887 3444 332 667788888887443221  


Q ss_pred             ChHHHHHHHHhCCCccEEEEEecc
Q 014317          315 SLLGLTCIMKACPFLQKLILQLND  338 (427)
Q Consensus       315 ~~~~l~~ll~~~p~L~~L~i~~~~  338 (427)
                      +.   . -+..+++|+.|++..+.
T Consensus       192 ~l---~-~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          192 DL---R-ALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             BC---G-GGTTCTTCSEEEEEEEE
T ss_pred             CC---h-hhccCCCCCEEECcCCc
Confidence            22   1 25678888888888763

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.09  E-value=6.5e-07  Score=82.33  Aligned_cols=162  Identities=15%  Similarity=0.157  Sum_probs=95.7

Q ss_pred             CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEE----ECCce
Q 014317          156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEI----SAPSL  231 (427)
Q Consensus       156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i----~~p~L  231 (427)
                      +..+++|+.|+|.++.+..-..   ...+|.|+.|++.++...........+++|+.|.++++. +..+..    ..++|
T Consensus        51 ~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L  126 (290)
T 1p9a_G           51 LMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGEL  126 (290)
T ss_dssp             GTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTC
T ss_pred             hhcCCCCCEEECCCCccCcccC---CCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCC
Confidence            5678999999999877654211   157899999999887543211112345788888887765 333321    13677


Q ss_pred             eEEEEeeeeeee----eccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeEEEE
Q 014317          232 LSFRYYGQAIKI----NIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRL  306 (427)
Q Consensus       232 ~~L~~~~~~~~~----~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l  306 (427)
                      ++|++.++....    .+..++.|+.+++..+...   ......+..+++|+.|.+++ +.+. ++..+....+|++|.+
T Consensus       127 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~---~l~~~~~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L  202 (290)
T 1p9a_G          127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT---ELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFL  202 (290)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS---CCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEEC
T ss_pred             CEEECCCCCCCccChhhcccccCCCEEECCCCcCC---ccCHHHhcCcCCCCEEECCC-CcCCccChhhcccccCCeEEe
Confidence            777776653321    2345667777777665522   22223345677777777776 4444 5555556667777777


Q ss_pred             EEEccCCC-ChHHHHHHHHh
Q 014317          307 RVTTPNRE-SLLGLTCIMKA  325 (427)
Q Consensus       307 ~~~~~~~~-~~~~l~~ll~~  325 (427)
                      ..+...+. +..++...++.
T Consensus       203 ~~Np~~C~c~~~~l~~wl~~  222 (290)
T 1p9a_G          203 HGNPWLCNCEILYFRRWLQD  222 (290)
T ss_dssp             CSCCBCCSGGGHHHHHHHHH
T ss_pred             CCCCccCcCccHHHHHHHHh
Confidence            54432221 34444444444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.07  E-value=2.8e-07  Score=77.18  Aligned_cols=61  Identities=7%  Similarity=0.060  Sum_probs=40.1

Q ss_pred             CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEE---Eec---CccccceEEEEecCCc
Q 014317          160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLR---VIG---SSIQLKYLEIQSCYLM  221 (427)
Q Consensus       160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~---i~~---~~~~L~~L~l~~c~~l  221 (427)
                      ..|+.|+|+++.+++..+..+ ++||.|+.|+|.+|..+++-.   +..   .+++|++|.+++|..+
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~I  127 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNV  127 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTC
T ss_pred             ceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcC
Confidence            468888888887777777664 678888888888887665421   111   1245777777766643

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.07  E-value=3.1e-07  Score=93.24  Aligned_cols=60  Identities=17%  Similarity=0.125  Sum_probs=39.5

Q ss_pred             CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecC
Q 014317          156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCY  219 (427)
Q Consensus       156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~  219 (427)
                      +..+++|+.|+|.++.+.+-.-   +..++.|+.|.|.+|.... +.....+++|+.|.+++|.
T Consensus        61 l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~  120 (605)
T 1m9s_A           61 IQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIKD-LSSLKDLKKLKSLSLEHNG  120 (605)
T ss_dssp             GGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCC-CTTSTTCTTCCEEECTTSC
T ss_pred             HccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCCCC-ChhhccCCCCCEEEecCCC
Confidence            5678888888888877654221   6778888888888775322 1111234677777776664

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.07  E-value=1.4e-07  Score=87.76  Aligned_cols=61  Identities=13%  Similarity=0.134  Sum_probs=41.2

Q ss_pred             CCCCcEEEEeeEEeChhhHHHHHh--cCCccceeeeccCCCceeE--EEe-cCccccceEEEEecC
Q 014317          159 IKFLRCLHFKTVNVNGKDIELFIQ--NCPLLDRLCVDHSKTLVRL--RVI-GSSIQLKYLEIQSCY  219 (427)
Q Consensus       159 ~~~L~~L~L~~~~~~~~~l~~ll~--~cp~Le~L~l~~c~~~~~l--~i~-~~~~~L~~L~l~~c~  219 (427)
                      ...++.|.+.++.+.+..+..+..  .++.|++|++.+|...+..  .+. ..+++|+.|.++++.
T Consensus        63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~  128 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS  128 (310)
T ss_dssp             SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC
T ss_pred             hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc
Confidence            346788888888888766655443  3577999999888643321  111 335788888888776

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.06  E-value=5.8e-06  Score=87.59  Aligned_cols=14  Identities=21%  Similarity=0.354  Sum_probs=8.2

Q ss_pred             CCcccceeeeeecc
Q 014317          247 NVPQLVDVSIRGSH  260 (427)
Q Consensus       247 ~~~~L~~l~l~~~~  260 (427)
                      +++.|+.+++..+.
T Consensus       424 ~l~~L~~L~Ls~N~  437 (844)
T 3j0a_A          424 RVPHLQILILNQNR  437 (844)
T ss_dssp             TCTTCCEEEEESCC
T ss_pred             cCCccceeeCCCCc
Confidence            45666666665554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.05  E-value=3.9e-07  Score=93.36  Aligned_cols=177  Identities=11%  Similarity=0.078  Sum_probs=99.5

Q ss_pred             cCCCCCCCCCCCcEEEEeeEEeChhhHHHHHhcCCc-cceeeeccCCCceeEE-Eec-CccccceEEEEecCCcc----E
Q 014317          151 ESGRGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPL-LDRLCVDHSKTLVRLR-VIG-SSIQLKYLEIQSCYLME----E  223 (427)
Q Consensus       151 ~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~-Le~L~l~~c~~~~~l~-i~~-~~~~L~~L~l~~c~~l~----~  223 (427)
                      .+| .+..+++|++|+|.++.+.  .+..-+..++. |+.|++.++....... +.. .+++|+.|.++++.-..    .
T Consensus       345 ~ip-~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  421 (636)
T 4eco_A          345 KLP-AFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN  421 (636)
T ss_dssp             ECC-CCEEEEEESEEECCSSEEE--ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCS
T ss_pred             chh-hhCCCCCCCEEECCCCccc--cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhh
Confidence            456 6778889999999887765  22223677888 9999998876332111 111 12368888887765211    1


Q ss_pred             EE------EECCceeEEEEeeeeeee----eccCCcccceeeeeeccccccchh-hccc---cccCCCceEEEEecccee
Q 014317          224 IE------ISAPSLLSFRYYGQAIKI----NIENVPQLVDVSIRGSHTFRVTYF-VGPI---ISCFPQLKTLELDSCNEV  289 (427)
Q Consensus       224 ~~------i~~p~L~~L~~~~~~~~~----~~~~~~~L~~l~l~~~~~~~~~~~-~~~~---~~~~~~l~~L~l~~~~~~  289 (427)
                      +.      ...++|++|++.++....    .+..++.|+.+++..+....+... +...   ...+++|+.|++++ +.+
T Consensus       422 l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l  500 (636)
T 4eco_A          422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF-NKL  500 (636)
T ss_dssp             SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCS-SCC
T ss_pred             hcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcC-CcC
Confidence            11      133578888887764321    123467788888776653221110 0000   12233777777776 333


Q ss_pred             e-cccccC--CCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEe
Q 014317          290 Y-MQFSLF--ELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQL  336 (427)
Q Consensus       290 ~-~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~  336 (427)
                      . ++..+.  .+++|++|+|+.+.-.     +++.-+..+++|+.|+++.
T Consensus       501 ~~lp~~~~~~~l~~L~~L~Ls~N~l~-----~ip~~~~~l~~L~~L~Ls~  545 (636)
T 4eco_A          501 TKLSDDFRATTLPYLVGIDLSYNSFS-----KFPTQPLNSSTLKGFGIRN  545 (636)
T ss_dssp             CBCCGGGSTTTCTTCCEEECCSSCCS-----SCCCGGGGCSSCCEEECCS
T ss_pred             CccChhhhhccCCCcCEEECCCCCCC-----CcChhhhcCCCCCEEECCC
Confidence            3 555544  6777777777433211     1223345677777777754

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.03  E-value=2.9e-07  Score=83.94  Aligned_cols=173  Identities=16%  Similarity=0.160  Sum_probs=104.2

Q ss_pred             CCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCCccEE---EE-ECC
Q 014317          155 GLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYLMEEI---EI-SAP  229 (427)
Q Consensus       155 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~~---~i-~~p  229 (427)
                      .+..+++|++|+|.++.+..-. ...+..++.|+.|++.++...... ..-..+++|+.|.++++. +..+   .+ ..+
T Consensus        47 ~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~  124 (276)
T 2z62_A           47 SFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLK  124 (276)
T ss_dssp             TTTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCT
T ss_pred             HhccccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCC-ccccCchhcccCC
Confidence            4567889999999887654311 112567889999999887533211 111245788888887765 2221   12 247


Q ss_pred             ceeEEEEeeeee-----eeeccCCcccceeeeeeccccccchhhccccccCCCce----EEEEeccceee-cccccCCCC
Q 014317          230 SLLSFRYYGQAI-----KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLK----TLELDSCNEVY-MQFSLFELP  299 (427)
Q Consensus       230 ~L~~L~~~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~----~L~l~~~~~~~-~~~~~~~~~  299 (427)
                      +|++|++.+...     +..+.+++.|+.+++..+....+   ....+..+++++    .|++++ +.+. .+.......
T Consensus       125 ~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~l~l~L~ls~-n~l~~~~~~~~~~~  200 (276)
T 2z62_A          125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI---YCTDLRVLHQMPLLNLSLDLSL-NPMNFIQPGAFKEI  200 (276)
T ss_dssp             TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE---CGGGGHHHHTCTTCCEEEECCS-SCCCEECTTSSCSC
T ss_pred             CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC---CHHHhhhhhhccccceeeecCC-CcccccCccccCCC
Confidence            899999887632     33567788999999988764321   111223333444    788876 4444 444444445


Q ss_pred             ceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317          300 KLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLN  337 (427)
Q Consensus       300 ~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  337 (427)
                      +|++|+++.+.-..  ..  ...+..+++|++|+++.+
T Consensus       201 ~L~~L~L~~n~l~~--~~--~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          201 RLKELALDTNQLKS--VP--DGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             CEEEEECCSSCCSC--CC--TTTTTTCCSCCEEECCSS
T ss_pred             cccEEECCCCceee--cC--HhHhcccccccEEEccCC
Confidence            78888885432211  11  134567888888888754

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.02  E-value=7.2e-07  Score=92.11  Aligned_cols=15  Identities=27%  Similarity=0.472  Sum_probs=9.5

Q ss_pred             HhccccccceEEEee
Q 014317          380 FQNATMLEKLIIEPS  394 (427)
Q Consensus       380 l~~a~~L~~l~i~~~  394 (427)
                      +.+.+.|+.+.+...
T Consensus       580 ~~~l~~L~~L~L~~N  594 (680)
T 1ziw_A          580 FNNQVSLKSLNLQKN  594 (680)
T ss_dssp             TTTCTTCCEEECTTS
T ss_pred             hCCCCCCCEEECCCC
Confidence            455677777776544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.01  E-value=1.8e-06  Score=79.30  Aligned_cols=126  Identities=19%  Similarity=0.217  Sum_probs=80.9

Q ss_pred             CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEEECCceeEEE
Q 014317          156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFR  235 (427)
Q Consensus       156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~  235 (427)
                      +..+++|+.|+|.++.+.+-  .. +..++.|+.|++.++.... +..-..+++|+.|.++++. +..+           
T Consensus        86 l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~L~~n~i~~-~~~l~~l~~L~~L~l~~n~-l~~~-----------  149 (291)
T 1h6t_A           86 LANLKNLGWLFLDENKVKDL--SS-LKDLKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNK-ITDI-----------  149 (291)
T ss_dssp             GTTCTTCCEEECCSSCCCCG--GG-GTTCTTCCEEECTTSCCCC-CGGGGGCTTCCEEECCSSC-CCCC-----------
T ss_pred             cccCCCCCEEECCCCcCCCC--hh-hccCCCCCEEECCCCcCCC-ChhhcCCCCCCEEEccCCc-CCcc-----------
Confidence            56889999999999887652  12 7789999999999885433 1111234677777777665 2222           


Q ss_pred             EeeeeeeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceeecccccCCCCceeEEEEEEEc
Q 014317          236 YYGQAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLRVTT  310 (427)
Q Consensus       236 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  310 (427)
                             -.+..++.|+.++++.+.....    .. +..+++|+.|.+++ +.+.....+..+++|+.|+++.+.
T Consensus       150 -------~~l~~l~~L~~L~L~~N~l~~~----~~-l~~l~~L~~L~L~~-N~i~~l~~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          150 -------TVLSRLTKLDTLSLEDNQISDI----VP-LAGLTKLQNLYLSK-NHISDLRALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             -------GGGGGCTTCSEEECCSSCCCCC----GG-GTTCTTCCEEECCS-SCCCBCGGGTTCTTCSEEEEEEEE
T ss_pred             -------hhhccCCCCCEEEccCCccccc----hh-hcCCCccCEEECCC-CcCCCChhhccCCCCCEEECcCCc
Confidence                   0234566677777766553221    11 46777888888876 444422235677788888876654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.00  E-value=2.6e-05  Score=78.58  Aligned_cols=61  Identities=18%  Similarity=0.146  Sum_probs=27.6

Q ss_pred             CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecC
Q 014317          156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCY  219 (427)
Q Consensus       156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~  219 (427)
                      +..+++|++|+|.++.+..-. ...+..++.|+.|++.++.-. .+.-. .+++|++|.++++.
T Consensus        72 ~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~l~~L~~L~Ls~N~  132 (562)
T 3a79_B           72 ISFLSELRVLRLSHNRIRSLD-FHVFLFNQDLEYLDVSHNRLQ-NISCC-PMASLRHLDLSFND  132 (562)
T ss_dssp             TTTCTTCCEEECCSCCCCEEC-TTTTTTCTTCCEEECTTSCCC-EECSC-CCTTCSEEECCSSC
T ss_pred             hccCCCccEEECCCCCCCcCC-HHHhCCCCCCCEEECCCCcCC-ccCcc-ccccCCEEECCCCC
Confidence            345556666666555443210 011344555666666555422 11111 23455555555544

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=97.98  E-value=3.1e-06  Score=76.72  Aligned_cols=37  Identities=22%  Similarity=0.586  Sum_probs=35.0

Q ss_pred             CCcCCCCChHHHHHHHhcCChHHHH-HHhhhhhhhhhh
Q 014317           13 EDLINRLPDDILVNIISHLTLKEAA-RTSVLSNRWRNL   49 (427)
Q Consensus        13 ~D~is~LPd~iL~~Ils~L~~~d~~-r~s~vskrW~~l   49 (427)
                      ...+..||+|++..||++||.++++ |++.|||+|+.+
T Consensus        48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l   85 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL   85 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred             ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence            4588999999999999999999999 999999999987

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.97  E-value=2e-06  Score=88.75  Aligned_cols=179  Identities=16%  Similarity=0.103  Sum_probs=87.5

Q ss_pred             CCCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCC--ccEEE---EE
Q 014317          154 RGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYL--MEEIE---IS  227 (427)
Q Consensus       154 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~--l~~~~---i~  227 (427)
                      ..+..+++|+.|+|.++.+.+.-....+.+++.|++|++.+|...... ..-..+++|+.|.+.++..  +..+.   -.
T Consensus       399 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~  478 (680)
T 1ziw_A          399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP  478 (680)
T ss_dssp             TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT
T ss_pred             hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccccc
Confidence            345667777777777655432111112456777777777666421100 0001245666666655431  00000   01


Q ss_pred             CCceeEEEEeeeeee----eeccCCcccceeeeeeccccccch-----hhccccccCCCceEEEEeccceee-ccc-ccC
Q 014317          228 APSLLSFRYYGQAIK----INIENVPQLVDVSIRGSHTFRVTY-----FVGPIISCFPQLKTLELDSCNEVY-MQF-SLF  296 (427)
Q Consensus       228 ~p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~-----~~~~~~~~~~~l~~L~l~~~~~~~-~~~-~~~  296 (427)
                      .++|+.|++.++...    ..+.+++.|+.+++..+....+..     .....+..+++|+.|++++ +.+. ++. .+.
T Consensus       479 l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~i~~~~~~  557 (680)
T 1ziw_A          479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES-NGFDEIPVEVFK  557 (680)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS-SCCCCCCTTTTT
T ss_pred             CCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCC-CCCCCCCHHHcc
Confidence            367777777665332    124556777777776655322100     0111245667777777776 3333 332 345


Q ss_pred             CCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317          297 ELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLN  337 (427)
Q Consensus       297 ~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  337 (427)
                      .+++|+.|+++.+.-..  ..  ...+..+++|+.|+++.+
T Consensus       558 ~l~~L~~L~Ls~N~l~~--l~--~~~~~~l~~L~~L~L~~N  594 (680)
T 1ziw_A          558 DLFELKIIDLGLNNLNT--LP--ASVFNNQVSLKSLNLQKN  594 (680)
T ss_dssp             TCTTCCEEECCSSCCCC--CC--TTTTTTCTTCCEEECTTS
T ss_pred             cccCcceeECCCCCCCc--CC--HhHhCCCCCCCEEECCCC
Confidence            56666666663321111  10  112345666666666543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.97  E-value=3.1e-06  Score=86.07  Aligned_cols=113  Identities=13%  Similarity=0.110  Sum_probs=49.2

Q ss_pred             cccceEEEEecCCccEEEEECCceeEEEEeeeeeeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccc
Q 014317          208 IQLKYLEIQSCYLMEEIEISAPSLLSFRYYGQAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCN  287 (427)
Q Consensus       208 ~~L~~L~l~~c~~l~~~~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~  287 (427)
                      ++|+.|.++++. +..+....++|+.|.+.++.........+.|+.++++.+..       ..+...+++|+.|.+++ +
T Consensus       181 ~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L-------~~lp~~l~~L~~L~Ls~-N  251 (622)
T 3g06_A          181 SGLQELSVSDNQ-LASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRL-------TSLPVLPSELKELMVSG-N  251 (622)
T ss_dssp             TTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCC-------SCCCCCCTTCCEEECCS-S
T ss_pred             CCCcEEECCCCC-CCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCCcc-------CcCCCCCCcCcEEECCC-C
Confidence            344444444433 22222223444444444443222112234455555544431       11224455666666665 3


Q ss_pred             eee-cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317          288 EVY-MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLN  337 (427)
Q Consensus       288 ~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  337 (427)
                      .+. ++.   .+++|++|+|+.+.-.     .++.-+.++|+|+.|+|+++
T Consensus       252 ~L~~lp~---~~~~L~~L~Ls~N~L~-----~lp~~l~~l~~L~~L~L~~N  294 (622)
T 3g06_A          252 RLTSLPM---LPSGLLSLSVYRNQLT-----RLPESLIHLSSETTVNLEGN  294 (622)
T ss_dssp             CCSCCCC---CCTTCCEEECCSSCCC-----SCCGGGGGSCTTCEEECCSC
T ss_pred             CCCcCCc---ccccCcEEeCCCCCCC-----cCCHHHhhccccCEEEecCC
Confidence            333 222   4456666665332111     12223456666666666554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.96  E-value=1.7e-06  Score=87.69  Aligned_cols=162  Identities=18%  Similarity=0.216  Sum_probs=71.6

Q ss_pred             CCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEE-E-ECCceeEEE
Q 014317          158 GIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIE-I-SAPSLLSFR  235 (427)
Q Consensus       158 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~-i-~~p~L~~L~  235 (427)
                      .+++|+.|.|.++.+..-.   -+..+|.|+.|+|.+|....... ...+++|+.|.+++|. +..+. + ..++|+.|+
T Consensus        41 ~L~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~  115 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKSVQ---GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLSSLKDLKKLKSLS  115 (605)
T ss_dssp             HHTTCCCCBCTTCCCCCCT---TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCTTSTTCTTCCEEE
T ss_pred             cCCCCCEEECcCCCCCCCh---HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCChhhccCCCCCEEE
Confidence            3455555555554443211   14455666666665553221101 1233555556555543 22211 0 125555555


Q ss_pred             Eeeeeee--eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeEEEEEEEccC
Q 014317          236 YYGQAIK--INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLRVTTPN  312 (427)
Q Consensus       236 ~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~  312 (427)
                      +.++.+.  -.+..++.|+.|.++.+....+     ..+..+++|+.|.|+. +.+. .+. +..+++|++|+|+.+.-.
T Consensus       116 Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-----~~l~~l~~L~~L~Ls~-N~l~~~~~-l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          116 LEHNGISDINGLVHLPQLESLYLGNNKITDI-----TVLSRLTKLDTLSLED-NQISDIVP-LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             CTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-----GGGGSCTTCSEEECCS-SCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred             ecCCCCCCCccccCCCccCEEECCCCccCCc-----hhhcccCCCCEEECcC-CcCCCchh-hccCCCCCEEECcCCCCC
Confidence            5544221  1234455556555555442211     2234555666666655 2332 212 455555666555332111


Q ss_pred             CCChHHHHHHHHhCCCccEEEEEec
Q 014317          313 RESLLGLTCIMKACPFLQKLILQLN  337 (427)
Q Consensus       313 ~~~~~~l~~ll~~~p~L~~L~i~~~  337 (427)
                        +.    .-+..+++|+.|+|..+
T Consensus       189 --~l----~~l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          189 --DL----RALAGLKNLDVLELFSQ  207 (605)
T ss_dssp             --BC----GGGTTCTTCSEEECCSE
T ss_pred             --CC----hHHccCCCCCEEEccCC
Confidence              11    12345566666665543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.94  E-value=2.1e-06  Score=80.36  Aligned_cols=101  Identities=14%  Similarity=0.094  Sum_probs=68.9

Q ss_pred             CCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCCccEEEEE-CCceeEEEE
Q 014317          159 IKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYLMEEIEIS-APSLLSFRY  236 (427)
Q Consensus       159 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~~~i~-~p~L~~L~~  236 (427)
                      +++|+.|+|.++.+..-. ...+..++.|++|++.++...... ..-..+++|++|.++++. +..+... .++|++|++
T Consensus        53 ~~~l~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~L~~L~l  130 (332)
T 2ft3_A           53 SPDTTLLDLQNNDISELR-KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLPSSLVELRI  130 (332)
T ss_dssp             CTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCCTTCCEEEC
T ss_pred             CCCCeEEECCCCcCCccC-HhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCccccccCCEEEC
Confidence            479999999987655321 112678999999999988643210 111246899999998875 4433222 279999999


Q ss_pred             eeeeee----eeccCCcccceeeeeeccc
Q 014317          237 YGQAIK----INIENVPQLVDVSIRGSHT  261 (427)
Q Consensus       237 ~~~~~~----~~~~~~~~L~~l~l~~~~~  261 (427)
                      .++...    ..+.+++.|+.+++..+..
T Consensus       131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l  159 (332)
T 2ft3_A          131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPL  159 (332)
T ss_dssp             CSSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred             CCCccCccCHhHhCCCccCCEEECCCCcc
Confidence            877432    2357788999999887653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.91  E-value=6e-07  Score=73.58  Aligned_cols=61  Identities=23%  Similarity=0.124  Sum_probs=33.4

Q ss_pred             ccCCCceEEEEeccceee-cc--cccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEE
Q 014317          273 SCFPQLKTLELDSCNEVY-MQ--FSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQ  335 (427)
Q Consensus       273 ~~~~~l~~L~l~~~~~~~-~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~  335 (427)
                      ..+++|+.|.+++ +.+. .+  ..+..+++|++|+++.+.-.. ........+..+|+|+.|+++
T Consensus        85 ~~l~~L~~L~ls~-N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           85 EKCPNLTHLNLSG-NKIKDLSTIEPLKKLENLKSLDLFNCEVTN-LNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             HHCTTCCEEECTT-SCCCSHHHHGGGGGCTTCCEEECTTCGGGG-STTHHHHHHHHCTTCCEETTB
T ss_pred             hhCCCCCEEECCC-CcCCChHHHHHHhhCCCCCEEeCcCCcccc-hHHHHHHHHHHCCCcccccCC
Confidence            4566777777776 3333 22  455666777777763321111 111112466778888887653

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.90  E-value=3.4e-06  Score=75.65  Aligned_cols=59  Identities=12%  Similarity=0.022  Sum_probs=31.0

Q ss_pred             CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecC
Q 014317          160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCY  219 (427)
Q Consensus       160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~  219 (427)
                      ++|+.|+|.++.+..-.- ..+..++.|+.|++.++...... ..-..+++|+.|.++++.
T Consensus        35 ~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~   94 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSD-ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ   94 (251)
T ss_dssp             TTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             CCCCEEEccCCCcCccCH-hHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc
Confidence            577777777766543211 12456777777777766432210 000123556666665543

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.87  E-value=3.3e-06  Score=75.70  Aligned_cols=35  Identities=23%  Similarity=0.463  Sum_probs=32.9

Q ss_pred             cCCCCChHHHHHHHhcCChHHHHHHhhhhhhhhhh
Q 014317           15 LINRLPDDILVNIISHLTLKEAARTSVLSNRWRNL   49 (427)
Q Consensus        15 ~is~LPd~iL~~Ils~L~~~d~~r~s~vskrW~~l   49 (427)
                      .|+.||+||+.+||+||+.+|+++++.|||+||.+
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l   38 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET   38 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            37789999999999999999999999999999975

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.83  E-value=7.2e-06  Score=68.64  Aligned_cols=87  Identities=13%  Similarity=0.098  Sum_probs=64.4

Q ss_pred             CceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEeeEE-eChhhHHHHHh---cCCccceeeeccCCCc
Q 014317          123 RVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVN-VNGKDIELFIQ---NCPLLDRLCVDHSKTL  198 (427)
Q Consensus       123 ~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~-~~~~~l~~ll~---~cp~Le~L~l~~c~~~  198 (427)
                      .+++|+++.+... +  ..+.           .+.++++|++|+|.+|. +++..+..+..   .||.|++|+|.+|..+
T Consensus        62 ~L~~LDLs~~~It-d--~GL~-----------~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~I  127 (176)
T 3e4g_A           62 KIQAIDATDSCIM-S--IGFD-----------HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNV  127 (176)
T ss_dssp             CEEEEEEESCCCC-G--GGGG-----------GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTC
T ss_pred             eEeEEeCcCCCcc-H--HHHH-----------HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcC
Confidence            5788888876422 1  1111           13578999999999996 89999998876   3889999999999877


Q ss_pred             eeE--EEecCccccceEEEEecCCccE
Q 014317          199 VRL--RVIGSSIQLKYLEIQSCYLMEE  223 (427)
Q Consensus       199 ~~l--~i~~~~~~L~~L~l~~c~~l~~  223 (427)
                      ++-  ..-+.+++|++|.+++|+.+..
T Consensus       128 TD~Gl~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          128 TDKGIIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             CHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred             CHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence            642  2123568999999999986553

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=97.82  E-value=2e-05  Score=67.69  Aligned_cols=84  Identities=21%  Similarity=0.275  Sum_probs=45.6

Q ss_pred             ccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCCCceeEEEEEEEccCCCChHHHHHH
Q 014317          245 IENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKLIDLRLRVTTPNRESLLGLTCI  322 (427)
Q Consensus       245 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l  322 (427)
                      +..++.|+.+++..+..   .......+..+++|+.|.+++ ..+.  .+..+..+++|++|+++.+.... +.   . .
T Consensus        84 l~~l~~L~~L~l~~n~l---~~~~~~~l~~l~~L~~L~Ls~-n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~---~-~  154 (197)
T 4ezg_A           84 ISGLSNLERLRIMGKDV---TSDKIPNLSGLTSLTLLDISH-SAHDDSILTKINTLPKVNSIDLSYNGAIT-DI---M-P  154 (197)
T ss_dssp             GTTCTTCCEEEEECTTC---BGGGSCCCTTCTTCCEEECCS-SBCBGGGHHHHTTCSSCCEEECCSCTBCC-CC---G-G
T ss_pred             hhcCCCCCEEEeECCcc---CcccChhhcCCCCCCEEEecC-CccCcHhHHHHhhCCCCCEEEccCCCCcc-cc---H-h
Confidence            34566666666666542   222223345677777777776 3333  34445666777777764432011 11   1 3


Q ss_pred             HHhCCCccEEEEEec
Q 014317          323 MKACPFLQKLILQLN  337 (427)
Q Consensus       323 l~~~p~L~~L~i~~~  337 (427)
                      +..+|+|+.|+++.+
T Consensus       155 l~~l~~L~~L~l~~n  169 (197)
T 4ezg_A          155 LKTLPELKSLNIQFD  169 (197)
T ss_dssp             GGGCSSCCEEECTTB
T ss_pred             hcCCCCCCEEECCCC
Confidence            566777777777544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.80  E-value=3.4e-05  Score=77.65  Aligned_cols=239  Identities=13%  Similarity=0.055  Sum_probs=138.9

Q ss_pred             HHHHHHHHhcCCceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEeeEEeCh-----hhHHHHHhcCCc
Q 014317          112 ITNWVYTVLGKRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVNG-----KDIELFIQNCPL  186 (427)
Q Consensus       112 ~~~wl~~~~~~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~-----~~l~~ll~~cp~  186 (427)
                      +..+........+++|.+..+...    ..+|..+|.        ...++|+.|.+.++....     +.+..++. .+.
T Consensus       266 ~~~~~~~~~~~~L~~L~l~~n~l~----~~ip~~~~~--------~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~-~~~  332 (562)
T 3a79_B          266 SVKLFQFFWPRPVEYLNIYNLTIT----ERIDREEFT--------YSETALKSLMIEHVKNQVFLFSKEALYSVFA-EMN  332 (562)
T ss_dssp             HHHHHHHHTTSSEEEEEEEEEEEC----SCCCCCCCC--------CCSCSCCEEEEEEEEECCCSSCHHHHHHHHH-TCC
T ss_pred             HHHHHHhhhcccccEEEEeccEee----ccccchhhh--------cccccchheehhhcccceeecChhhhhhhhc-cCc
Confidence            333344334457777777654211    133433221        112567777766665432     34444333 478


Q ss_pred             cceeeeccCCCceeEEEecCccccceEEEEecCCccE-E---EEECCceeEEEEeeeeee------eeccCCcccceeee
Q 014317          187 LDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEE-I---EISAPSLLSFRYYGQAIK------INIENVPQLVDVSI  256 (427)
Q Consensus       187 Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~-~---~i~~p~L~~L~~~~~~~~------~~~~~~~~L~~l~l  256 (427)
                      |+.|.+.++..... .+...+++|+.|.++++. +.. +   --..|+|++|++.++...      ..+.+++.|+.+++
T Consensus       333 L~~L~l~~n~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l  410 (562)
T 3a79_B          333 IKMLSISDTPFIHM-VCPPSPSSFTFLNFTQNV-FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDV  410 (562)
T ss_dssp             CSEEEEESSCCCCC-CCCSSCCCCCEEECCSSC-CCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEEC
T ss_pred             ceEEEccCCCcccc-cCccCCCCceEEECCCCc-cccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEEC
Confidence            99999998864332 222455889999998875 222 1   123589999999877443      23578899999999


Q ss_pred             eeccccccchhhccccccCCCceEEEEeccceee--cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEE
Q 014317          257 RGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLIL  334 (427)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i  334 (427)
                      ..+....  ..-...+..+++|+.|.+++ +.+.  .+..++  ++|+.|+++.+.-.     .++.-+..+++|+.|++
T Consensus       411 ~~N~l~~--~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~--~~L~~L~L~~N~l~-----~ip~~~~~l~~L~~L~L  480 (562)
T 3a79_B          411 SLNSLNS--HAYDRTCAWAESILVLNLSS-NMLTGSVFRCLP--PKVKVLDLHNNRIM-----SIPKDVTHLQALQELNV  480 (562)
T ss_dssp             TTSCCBS--CCSSCCCCCCTTCCEEECCS-SCCCGGGGSSCC--TTCSEEECCSSCCC-----CCCTTTTSSCCCSEEEC
T ss_pred             CCCcCCC--ccChhhhcCcccCCEEECCC-CCCCcchhhhhc--CcCCEEECCCCcCc-----ccChhhcCCCCCCEEEC
Confidence            8776322  01223456789999999998 4443  333322  68999998544221     12222348899999999


Q ss_pred             EeccCCCCCCcccccCCCCccCCccEEEEece--ecCccHHHHHHHHH
Q 014317          335 QLNDHGRRLGKKRQQFPKYSHQHLKVVELHGF--LGRQFDVELAQYLF  380 (427)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f--~g~~~e~~~~~~ll  380 (427)
                      +.+.-...+...   +  ....+|+.+.+.+-  .+......++...+
T Consensus       481 ~~N~l~~l~~~~---~--~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~  523 (562)
T 3a79_B          481 ASNQLKSVPDGV---F--DRLTSLQYIWLHDNPWDCTCPGIRYLSEWI  523 (562)
T ss_dssp             CSSCCCCCCTTS---T--TTCTTCCCEECCSCCBCCCHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHH---H--hcCCCCCEEEecCCCcCCCcchHHHHHHHH
Confidence            876432211110   1  13467888888763  34444445545333

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.77  E-value=1.7e-05  Score=66.84  Aligned_cols=63  Identities=19%  Similarity=0.151  Sum_probs=36.7

Q ss_pred             ccCCCceEEEEeccceee-ccc--ccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317          273 SCFPQLKTLELDSCNEVY-MQF--SLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLN  337 (427)
Q Consensus       273 ~~~~~l~~L~l~~~~~~~-~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  337 (427)
                      ..+++|+.|.+++ +.+. .+.  .+..+++|++|.++.+.-.. ....-..++..+|+|+.|+++.+
T Consensus        85 ~~l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           85 QALPDLTELILTN-NSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             HHCTTCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEEC
T ss_pred             hcCCCCCEEECCC-CcCCcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcC
Confidence            4667777777776 3443 333  45566777777764332211 11111235678899999888765

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.74  E-value=4.8e-05  Score=71.71  Aligned_cols=171  Identities=14%  Similarity=0.073  Sum_probs=86.0

Q ss_pred             CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEe--cCccccceEEEEecCCccEEEE----ECCceeE
Q 014317          160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVI--GSSIQLKYLEIQSCYLMEEIEI----SAPSLLS  233 (427)
Q Consensus       160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~--~~~~~L~~L~l~~c~~l~~~~i----~~p~L~~  233 (427)
                      +++++|+|.+..+..=. ...++++++|++|+|.++...+.+...  ..+++|+++.+..+..+..+.-    ..++|++
T Consensus        30 ~~l~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~  108 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQ-KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  108 (350)
T ss_dssp             TTCSEEEEESCCCSEEC-TTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred             CCCCEEEccCCcCCCcC-HHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence            57888888877654200 012466788888888877655433211  1345666655555555655532    2378888


Q ss_pred             EEEeeeeeee----eccCCcccceeeeeeccccccchhh-ccccccCCCceEEEEeccceee-cccccCCCCceeEEEEE
Q 014317          234 FRYYGQAIKI----NIENVPQLVDVSIRGSHTFRVTYFV-GPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLR  307 (427)
Q Consensus       234 L~~~~~~~~~----~~~~~~~L~~l~l~~~~~~~~~~~~-~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~  307 (427)
                      |.+.+.....    .......+..+.+.....  +...- ..+......++.|.++. +.+. ++.......+|++|.+.
T Consensus       109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~--i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~~f~~~~L~~l~l~  185 (350)
T 4ay9_X          109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN--IHTIERNSFVGLSFESVILWLNK-NGIQEIHNSAFNGTQLDELNLS  185 (350)
T ss_dssp             EEEEEECCSSCCCCTTCCBSSCEEEEEESCTT--CCEECTTSSTTSBSSCEEEECCS-SCCCEECTTSSTTEEEEEEECT
T ss_pred             ccccccccccCCchhhcccchhhhhhhccccc--cccccccchhhcchhhhhhcccc-ccccCCChhhccccchhHHhhc
Confidence            8887764321    122233344444432211  11101 11222334577777776 4444 44444444456665552


Q ss_pred             EEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317          308 VTTPNRESLLGLTCIMKACPFLQKLILQLN  337 (427)
Q Consensus       308 ~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  337 (427)
                      .+.... .+.  ...+..+++|+.|+++.+
T Consensus       186 ~~n~l~-~i~--~~~f~~l~~L~~LdLs~N  212 (350)
T 4ay9_X          186 DNNNLE-ELP--NDVFHGASGPVILDISRT  212 (350)
T ss_dssp             TCTTCC-CCC--TTTTTTEECCSEEECTTS
T ss_pred             cCCccc-CCC--HHHhccCcccchhhcCCC
Confidence            111111 111  123466778888888654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.71  E-value=1.5e-05  Score=72.04  Aligned_cols=36  Identities=17%  Similarity=0.263  Sum_probs=16.6

Q ss_pred             CCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccC
Q 014317          157 SGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHS  195 (427)
Q Consensus       157 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c  195 (427)
                      ..+++|+.|+|.++.+.+-.-   +..++.|+.|++.++
T Consensus        60 ~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N   95 (263)
T 1xeu_A           60 QFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRN   95 (263)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSS
T ss_pred             hhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCC
Confidence            344555555555544433111   444555555555444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.69  E-value=1.7e-05  Score=79.64  Aligned_cols=31  Identities=10%  Similarity=0.022  Sum_probs=14.2

Q ss_pred             CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccC
Q 014317          160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHS  195 (427)
Q Consensus       160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c  195 (427)
                      ++|+.|+|+++.+..  +.   ..+++|+.|++.++
T Consensus        80 ~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N  110 (571)
T 3cvr_A           80 PQITVLEITQNALIS--LP---ELPASLEYLDACDN  110 (571)
T ss_dssp             TTCSEEECCSSCCSC--CC---CCCTTCCEEECCSS
T ss_pred             CCCCEEECcCCCCcc--cc---cccCCCCEEEccCC
Confidence            445555555544431  11   23455555555544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.64  E-value=2.1e-05  Score=70.34  Aligned_cols=146  Identities=17%  Similarity=0.152  Sum_probs=81.3

Q ss_pred             CceeEEEEeeeeee----eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-ccc-ccCCCCcee
Q 014317          229 PSLLSFRYYGQAIK----INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQF-SLFELPKLI  302 (427)
Q Consensus       229 p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~-~~~~~~~L~  302 (427)
                      ++|++|++.+....    ..+..++.|+.+++..+...   ......+..+++|+.|.+++ +.+. ++. .+..+++|+
T Consensus        59 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~  134 (251)
T 3m19_A           59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA---SLPLGVFDHLTQLDKLYLGG-NQLKSLPSGVFDRLTKLK  134 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC---CCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCC
T ss_pred             ccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccc---ccChhHhcccCCCCEEEcCC-CcCCCcChhHhccCCccc
Confidence            55555555544321    12456777888887766532   22334456788899999887 4554 333 346778888


Q ss_pred             EEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEece--ecC-ccHHHHHHHH
Q 014317          303 DLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGF--LGR-QFDVELAQYL  379 (427)
Q Consensus       303 ~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f--~g~-~~e~~~~~~l  379 (427)
                      +|.++.+.-..  ..  ...+..+++|+.|+++.+.-......  . +  ....+|+.+.+.+-  .+. ..-..+..++
T Consensus       135 ~L~Ls~N~l~~--~~--~~~~~~l~~L~~L~L~~N~l~~~~~~--~-~--~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~  205 (251)
T 3m19_A          135 ELRLNTNQLQS--IP--AGAFDKLTNLQTLSLSTNQLQSVPHG--A-F--DRLGKLQTITLFGNQFDCSRCEILYLSQWI  205 (251)
T ss_dssp             EEECCSSCCCC--CC--TTTTTTCTTCCEEECCSSCCSCCCTT--T-T--TTCTTCCEEECCSCCBCTTSTTHHHHHHHH
T ss_pred             EEECcCCcCCc--cC--HHHcCcCcCCCEEECCCCcCCccCHH--H-H--hCCCCCCEEEeeCCceeCCccccHHHHHHH
Confidence            88885432211  11  12346788999999876542221110  0 1  12467888888763  344 2333445555


Q ss_pred             Hhcccccc
Q 014317          380 FQNATMLE  387 (427)
Q Consensus       380 l~~a~~L~  387 (427)
                      .++...+.
T Consensus       206 ~~~~~~~~  213 (251)
T 3m19_A          206 RENSNKVK  213 (251)
T ss_dssp             HHSGGGBC
T ss_pred             Hhccccee
Confidence            55554443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.61  E-value=1.2e-05  Score=70.48  Aligned_cols=143  Identities=13%  Similarity=0.118  Sum_probs=75.7

Q ss_pred             CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEE--ecCccccceEEEEecCCccEEEEECCceeEEEEe
Q 014317          160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRV--IGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYY  237 (427)
Q Consensus       160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~~~  237 (427)
                      +.++.|+|.+..+..-.....+..++.|+.|++.++.... +.-  -..+++|+.|.++++. +..+             
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~-i~~~~~~~l~~L~~L~Ls~N~-l~~~-------------   96 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD-IEEGAFEGASGVNEILLTSNR-LENV-------------   96 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSC-CCCC-------------
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE-ECHHHhCCCCCCCEEECCCCc-cCcc-------------
Confidence            4677888887765432111225667888888887764221 110  0122444444444433 1111             


Q ss_pred             eeeeeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCCCceeEEEEEEEccCCC-
Q 014317          238 GQAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKLIDLRLRVTTPNRE-  314 (427)
Q Consensus       238 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~-  314 (427)
                         .+..+.+++.|+.+.+..+....   .....+..+++|+.|+|++ +.+.  .+..+..+++|++|+++.+.-.+. 
T Consensus        97 ---~~~~~~~l~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A           97 ---QHKMFKGLESLKTLMLRSNRITC---VGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             ---CGGGGTTCSSCCEEECTTSCCCC---BCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             ---CHhHhcCCcCCCEEECCCCcCCe---ECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence               01124556777777776655322   2233345778888888887 4444  345566777788887754432221 


Q ss_pred             ChHHHHHHHH
Q 014317          315 SLLGLTCIMK  324 (427)
Q Consensus       315 ~~~~l~~ll~  324 (427)
                      ...++...++
T Consensus       170 ~l~~l~~~~~  179 (220)
T 2v70_A          170 YLAWLGEWLR  179 (220)
T ss_dssp             GGHHHHHHHH
T ss_pred             chHHHHHHHH
Confidence            3344444444

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.60  E-value=1.8e-05  Score=77.31  Aligned_cols=43  Identities=23%  Similarity=0.448  Sum_probs=38.7

Q ss_pred             ccCCCcCCCCChHHHHHHHhcCChHHHHHHhhhhhhhhhhccc
Q 014317           10 EISEDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTF   52 (427)
Q Consensus        10 ~~~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vskrW~~lw~~   52 (427)
                      .-..|.|+.||+|++.+||++|+.+|.++++.|||+|+++...
T Consensus         9 ~~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~   51 (464)
T 3v7d_B            9 NLKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   51 (464)
T ss_dssp             CCCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred             ccccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence            4457999999999999999999999999999999999987444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.56  E-value=7.2e-06  Score=78.07  Aligned_cols=167  Identities=14%  Similarity=0.122  Sum_probs=90.6

Q ss_pred             CCCCcEEEEeeEEeChhh---HHHHHhc-CCccceeeeccCCCcee-E-EEecCccccceEEEEecCCccEEEEECCcee
Q 014317          159 IKFLRCLHFKTVNVNGKD---IELFIQN-CPLLDRLCVDHSKTLVR-L-RVIGSSIQLKYLEIQSCYLMEEIEISAPSLL  232 (427)
Q Consensus       159 ~~~L~~L~L~~~~~~~~~---l~~ll~~-cp~Le~L~l~~c~~~~~-l-~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~  232 (427)
                      .++|+.|+|.++.+++..   +...+.. ++.|++|+|.+|...+. + .+...+++|++|.+++|. +......+  | 
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~--L-  146 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKD--L-  146 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHH--H-
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHH--H-
Confidence            357888888887777644   3333332 36888888877753210 0 111122455555555553 11100000  0 


Q ss_pred             EEEEeeeeeeeeccCCcccceeeeeeccccc-cchhhccccccCCCceEEEEeccceee------cccccCCCCceeEEE
Q 014317          233 SFRYYGQAIKINIENVPQLVDVSIRGSHTFR-VTYFVGPIISCFPQLKTLELDSCNEVY------MQFSLFELPKLIDLR  305 (427)
Q Consensus       233 ~L~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~~~~l~~L~l~~~~~~~------~~~~~~~~~~L~~L~  305 (427)
                              ........+.|+.+++..+.... -...+...+..+++|+.|+|++ +.+.      +...+...++|++|+
T Consensus       147 --------~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~-N~l~~~g~~~L~~~L~~~~~L~~L~  217 (372)
T 3un9_A          147 --------RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLH-TGLGDEGLELLAAQLDRNRQLQELN  217 (372)
T ss_dssp             --------HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTT-SSCHHHHHHHHHHHGGGCSCCCEEE
T ss_pred             --------HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCC-CCCCcHHHHHHHHHHhcCCCcCeEE
Confidence                    00000234556666666655221 0112333446788899999987 3443      344556667899998


Q ss_pred             EEEEccCCCChHHHHHHHHhCCCccEEEEEecc
Q 014317          306 LRVTTPNRESLLGLTCIMKACPFLQKLILQLND  338 (427)
Q Consensus       306 l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~  338 (427)
                      |+.+.-.......+...+..+|+|++|+++.+.
T Consensus       218 Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          218 VAYNGAGDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence            855433322334566677788999999997653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.55  E-value=2.2e-05  Score=68.83  Aligned_cols=144  Identities=11%  Similarity=0.038  Sum_probs=77.5

Q ss_pred             CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCCccEEEEECCceeEEEEee
Q 014317          160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYYG  238 (427)
Q Consensus       160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~~~~  238 (427)
                      ++|+.|+|.+..+..-. ...+..++.|+.|+|.++...... ..-..+++|+.|.++++. +..+.             
T Consensus        32 ~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~-------------   96 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELP-------------   96 (220)
T ss_dssp             TTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCC-------------
T ss_pred             cCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccC-------------
Confidence            67888888877654311 012456788888888776432110 000123455555554443 21110             


Q ss_pred             eeeeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cc-cccCCCCceeEEEEEEEccCCC-C
Q 014317          239 QAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQ-FSLFELPKLIDLRLRVTTPNRE-S  315 (427)
Q Consensus       239 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~-~~~~~~~~L~~L~l~~~~~~~~-~  315 (427)
                         +..+.+++.|+.+.+..+....   .....+..+++|+.|+|++ +.+. ++ ..+..+++|++|+++.+.-.+. .
T Consensus        97 ---~~~f~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B           97 ---KSLFEGLFSLQLLLLNANKINC---LRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             ---TTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             ---HhHccCCCCCCEEECCCCCCCE---eCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence               1123556677777776665322   2233456778888888887 4444 33 3456677888888754432221 4


Q ss_pred             hHHHHHHHHh
Q 014317          316 LLGLTCIMKA  325 (427)
Q Consensus       316 ~~~l~~ll~~  325 (427)
                      ..++...+..
T Consensus       170 l~~l~~~l~~  179 (220)
T 2v9t_B          170 LKWLADYLHT  179 (220)
T ss_dssp             GHHHHHHHHH
T ss_pred             cHHHHHHHHh
Confidence            5555555554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.54  E-value=2.6e-05  Score=76.39  Aligned_cols=154  Identities=16%  Similarity=0.148  Sum_probs=97.5

Q ss_pred             CCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEEECCceeEEEEee
Q 014317          159 IKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYYG  238 (427)
Q Consensus       159 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~~~~  238 (427)
                      .++|++|++.++.+..  +.. +..++.|+.|++.++.-..   +....++|+.|.++++. +..+....++|++|++++
T Consensus       214 ~~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~l~~N~l~~---l~~~~~~L~~L~l~~N~-l~~l~~~~~~L~~L~ls~  286 (454)
T 1jl5_A          214 PLSLESIVAGNNILEE--LPE-LQNLPFLTTIYADNNLLKT---LPDLPPSLEALNVRDNY-LTDLPELPQSLTFLDVSE  286 (454)
T ss_dssp             CTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCCSS---CCSCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCS
T ss_pred             cCcccEEECcCCcCCc--ccc-cCCCCCCCEEECCCCcCCc---ccccccccCEEECCCCc-ccccCcccCcCCEEECcC
Confidence            3689999999887652  222 6689999999998875332   12223689999998876 444433457899999887


Q ss_pred             eeeeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeEEEEEEEccCCCChH
Q 014317          239 QAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLRVTTPNRESLL  317 (427)
Q Consensus       239 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~  317 (427)
                      +.....-.-.+.|+.+++..+...       .+....++++.|++++ +.+. ++.   .+++|+.|+++.+.-.  .. 
T Consensus       287 N~l~~l~~~~~~L~~L~l~~N~l~-------~i~~~~~~L~~L~Ls~-N~l~~lp~---~~~~L~~L~L~~N~l~--~l-  352 (454)
T 1jl5_A          287 NIFSGLSELPPNLYYLNASSNEIR-------SLCDLPPSLEELNVSN-NKLIELPA---LPPRLERLIASFNHLA--EV-  352 (454)
T ss_dssp             SCCSEESCCCTTCCEEECCSSCCS-------EECCCCTTCCEEECCS-SCCSCCCC---CCTTCCEEECCSSCCS--CC-
T ss_pred             CccCcccCcCCcCCEEECcCCcCC-------cccCCcCcCCEEECCC-Cccccccc---cCCcCCEEECCCCccc--cc-
Confidence            644321122357888888766522       1222235888999887 4433 332   3578888888543221  11 


Q ss_pred             HHHHHHHhCCCccEEEEEecc
Q 014317          318 GLTCIMKACPFLQKLILQLND  338 (427)
Q Consensus       318 ~l~~ll~~~p~L~~L~i~~~~  338 (427)
                        ..   .+++|++|+++.+.
T Consensus       353 --p~---~l~~L~~L~L~~N~  368 (454)
T 1jl5_A          353 --PE---LPQNLKQLHVEYNP  368 (454)
T ss_dssp             --CC---CCTTCCEEECCSSC
T ss_pred             --cc---hhhhccEEECCCCC
Confidence              11   36789999987654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.53  E-value=1.3e-05  Score=81.52  Aligned_cols=128  Identities=17%  Similarity=0.151  Sum_probs=74.0

Q ss_pred             cCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCCCceeEEEEEEEccCCCChHHHHHHH
Q 014317          246 ENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIM  323 (427)
Q Consensus       246 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll  323 (427)
                      ...+.++.+.+..+...  .......+..+++|+.|+|++| .+.  .+..+..+++|+.|.|+.+.-....    ...+
T Consensus       466 ~~~~~L~~L~Ls~N~~~--~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~----~~~~  538 (635)
T 4g8a_A          466 NGLSSLEVLKMAGNSFQ--ENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLD----TFPY  538 (635)
T ss_dssp             TTCTTCCEEECTTCEEG--GGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCBCC----CGGG
T ss_pred             ccchhhhhhhhhhcccc--cccCchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCCcCCCCC----hhHH
Confidence            44566676666554321  1123344577888999999874 444  3556677888888888433211111    1235


Q ss_pred             HhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEec--eecCccHHHHHHHHHhccc
Q 014317          324 KACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHG--FLGRQFDVELAQYLFQNAT  384 (427)
Q Consensus       324 ~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~--f~g~~~e~~~~~~ll~~a~  384 (427)
                      ..+++|+.|+++.+.-.......   + .....+|+.+.+.+  |...+.-.+|..++-++..
T Consensus       539 ~~l~~L~~L~Ls~N~l~~~~~~~---l-~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~  597 (635)
T 4g8a_A          539 KCLNSLQVLDYSLNHIMTSKKQE---L-QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQ  597 (635)
T ss_dssp             TTCTTCCEEECTTSCCCBCCSSC---T-TCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTT
T ss_pred             hCCCCCCEEECCCCcCCCCCHHH---H-HhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCC
Confidence            67889999998765422211110   1 11236799999876  4555555666776655443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.52  E-value=8.8e-06  Score=70.57  Aligned_cols=146  Identities=16%  Similarity=0.161  Sum_probs=79.8

Q ss_pred             CCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCCccEEEEECCceeEEEEe
Q 014317          159 IKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYY  237 (427)
Q Consensus       159 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~~~  237 (427)
                      .++|+.|+|.+..+..- ....+..++.|++|++.++...... ..-..+++|++|.++++. +..+.            
T Consensus        27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~------------   92 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLP------------   92 (208)
T ss_dssp             CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCC------------
T ss_pred             CCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccC------------
Confidence            46888888888766531 1123567888888888776432110 000123555666555543 22110            


Q ss_pred             eeeeeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-ccc-ccCCCCceeEEEEEEEccCCCC
Q 014317          238 GQAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQF-SLFELPKLIDLRLRVTTPNRES  315 (427)
Q Consensus       238 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~-~~~~~~~L~~L~l~~~~~~~~~  315 (427)
                          ...+..++.|+.+++..+...   ......+..+++|+.|++++ +.+. .+. .+..+++|++|+++.+..    
T Consensus        93 ----~~~~~~l~~L~~L~L~~N~l~---~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~----  160 (208)
T 2o6s_A           93 ----NGVFDKLTQLKELALNTNQLQ---SLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNPW----  160 (208)
T ss_dssp             ----TTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCB----
T ss_pred             ----HhHhcCccCCCEEEcCCCcCc---ccCHhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEecCCCe----
Confidence                011345666777777665522   12223346778888888887 4444 333 356677888887743311    


Q ss_pred             hHHHHHHHHhCCCccEEEEEec
Q 014317          316 LLGLTCIMKACPFLQKLILQLN  337 (427)
Q Consensus       316 ~~~l~~ll~~~p~L~~L~i~~~  337 (427)
                             ...||+|+.|.+..+
T Consensus       161 -------~~~~~~l~~L~~~~n  175 (208)
T 2o6s_A          161 -------DCTCPGIRYLSEWIN  175 (208)
T ss_dssp             -------CCCTTTTHHHHHHHH
T ss_pred             -------ecCCCCHHHHHHHHH
Confidence                   134666776666544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.50  E-value=0.00016  Score=63.68  Aligned_cols=144  Identities=15%  Similarity=0.113  Sum_probs=84.6

Q ss_pred             CceeEEEEeeeeee----eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cc-cccCCCCcee
Q 014317          229 PSLLSFRYYGQAIK----INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQ-FSLFELPKLI  302 (427)
Q Consensus       229 p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~-~~~~~~~~L~  302 (427)
                      ++|+.|+++++.+.    ..+.+++.|+.+++..+...   ......+..+++|+.|+|++ +.+. ++ ..+..+++|+
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~---~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~  115 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG---ALPVGVFDSLTQLTVLDLGT-NQLTVLPSAVFDRLVHLK  115 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC---CcChhhcccCCCcCEEECCC-CcCCccChhHhCcchhhC
Confidence            56666666555332    23566788888888777632   22233456889999999997 4555 33 3456788899


Q ss_pred             EEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEece--ecCccHH-HHHHHH
Q 014317          303 DLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGF--LGRQFDV-ELAQYL  379 (427)
Q Consensus       303 ~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f--~g~~~e~-~~~~~l  379 (427)
                      +|.++.+.-.     .+..-+..+++|+.|+++.+.-.......   +  ....+|+.+.+.+-  .+...++ .+..++
T Consensus       116 ~L~Ls~N~l~-----~lp~~~~~l~~L~~L~L~~N~l~~~~~~~---~--~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~  185 (229)
T 3e6j_A          116 ELFMCCNKLT-----ELPRGIERLTHLTHLALDQNQLKSIPHGA---F--DRLSSLTHAYLFGNPWDCECRDIMYLRNWV  185 (229)
T ss_dssp             EEECCSSCCC-----SCCTTGGGCTTCSEEECCSSCCCCCCTTT---T--TTCTTCCEEECTTSCBCTTBGGGHHHHHHH
T ss_pred             eEeccCCccc-----ccCcccccCCCCCEEECCCCcCCccCHHH---H--hCCCCCCEEEeeCCCccCCcchhHHHHHHH
Confidence            9888543222     12233478899999999765322211110   1  12467888888753  3334333 344556


Q ss_pred             Hhccccc
Q 014317          380 FQNATML  386 (427)
Q Consensus       380 l~~a~~L  386 (427)
                      ..+...+
T Consensus       186 ~~~~~~~  192 (229)
T 3e6j_A          186 ADHTSIA  192 (229)
T ss_dssp             HHCGGGE
T ss_pred             HhCcccc
Confidence            5555554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.47  E-value=8e-05  Score=72.86  Aligned_cols=95  Identities=16%  Similarity=0.186  Sum_probs=49.5

Q ss_pred             CCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEE-E-ECCceeEEEE
Q 014317          159 IKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIE-I-SAPSLLSFRY  236 (427)
Q Consensus       159 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~-i-~~p~L~~L~~  236 (427)
                      .++|++|+|.++.+..-  .. +..++.|+.|++.++...+   ++...++|+.|.++++. +..+. + ..++|++|++
T Consensus       172 ~~~L~~L~L~~n~l~~l--~~-~~~l~~L~~L~l~~N~l~~---l~~~~~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~l  244 (454)
T 1jl5_A          172 PPSLEFIAAGNNQLEEL--PE-LQNLPFLTAIYADNNSLKK---LPDLPLSLESIVAGNNI-LEELPELQNLPFLTTIYA  244 (454)
T ss_dssp             CTTCCEEECCSSCCSSC--CC-CTTCTTCCEEECCSSCCSS---CCCCCTTCCEEECCSSC-CSSCCCCTTCTTCCEEEC
T ss_pred             cccccEEECcCCcCCcC--cc-ccCCCCCCEEECCCCcCCc---CCCCcCcccEEECcCCc-CCcccccCCCCCCCEEEC
Confidence            35788888877765541  11 5667777777777765322   11112466677666654 22221 1 1356666666


Q ss_pred             eeeeeeeeccCCcccceeeeeecc
Q 014317          237 YGQAIKINIENVPQLVDVSIRGSH  260 (427)
Q Consensus       237 ~~~~~~~~~~~~~~L~~l~l~~~~  260 (427)
                      .++.....-...+.|+.+++..+.
T Consensus       245 ~~N~l~~l~~~~~~L~~L~l~~N~  268 (454)
T 1jl5_A          245 DNNLLKTLPDLPPSLEALNVRDNY  268 (454)
T ss_dssp             CSSCCSSCCSCCTTCCEEECCSSC
T ss_pred             CCCcCCcccccccccCEEECCCCc
Confidence            654322111223455666555443

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.45  E-value=6.6e-05  Score=72.90  Aligned_cols=42  Identities=24%  Similarity=0.496  Sum_probs=38.2

Q ss_pred             ccccCCCcCCCCChHHHHHHHhcCChHHHHHHhhhhhhhhhh
Q 014317            8 KEEISEDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNL   49 (427)
Q Consensus         8 ~~~~~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vskrW~~l   49 (427)
                      ++....|.++.||+|++.+||+||+.+|+++++.|||+|+++
T Consensus        11 ~~~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~   52 (445)
T 2ovr_B           11 EPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (445)
T ss_dssp             CCCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             CccccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence            345567999999999999999999999999999999999875

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.37  E-value=1.4e-05  Score=67.29  Aligned_cols=130  Identities=14%  Similarity=0.101  Sum_probs=71.2

Q ss_pred             CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEEECCceeEEE
Q 014317          156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFR  235 (427)
Q Consensus       156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~  235 (427)
                      +..+++|+.|+|.++.+..  +..+...+|.|+.|++.++.-.+ +..-..+++|+.|.++++. +..+..         
T Consensus        15 ~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~-~~~l~~l~~L~~L~Ls~N~-l~~~~~---------   81 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRK-LDGFPLLRRLKTLLVNNNR-ICRIGE---------   81 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCE-ECCCCCCSSCCEEECCSSC-CCEECS---------
T ss_pred             cCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCc-ccccccCCCCCEEECCCCc-ccccCc---------
Confidence            3456788888888776653  22233345588888887774332 2111234566666666554 333210         


Q ss_pred             EeeeeeeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccc----cCCCCceeEEEEEE
Q 014317          236 YYGQAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFS----LFELPKLIDLRLRV  308 (427)
Q Consensus       236 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~----~~~~~~L~~L~l~~  308 (427)
                             ..+..++.|+.++++.+....+..  ...+..+++|+.|.+++ +.+. .+..    +..+++|+.|+++.
T Consensus        82 -------~~~~~l~~L~~L~L~~N~i~~~~~--~~~l~~l~~L~~L~l~~-N~i~~~~~~~~~~~~~l~~L~~Ld~~~  149 (176)
T 1a9n_A           82 -------GLDQALPDLTELILTNNSLVELGD--LDPLASLKSLTYLCILR-NPVTNKKHYRLYVIYKVPQVRVLDFQK  149 (176)
T ss_dssp             -------CHHHHCTTCCEEECCSCCCCCGGG--GGGGGGCTTCCEEECCS-SGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred             -------chhhcCCCCCEEECCCCcCCcchh--hHhhhcCCCCCEEEecC-CCCCCcHhHHHHHHHHCCccceeCCCc
Confidence                   012445666666666554321111  11345778888888877 3333 3332    56677888877644

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.35  E-value=2.4e-05  Score=65.30  Aligned_cols=60  Identities=18%  Similarity=0.119  Sum_probs=31.1

Q ss_pred             CCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecC
Q 014317          159 IKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCY  219 (427)
Q Consensus       159 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~  219 (427)
                      .++|++|+|.++.+.++.+...+..++.|+.|++.+|.... +..-..+++|+.|.++++.
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~Ls~N~   82 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-VSNLPKLPKLKKLELSENR   82 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-CSSCCCCSSCCEEEEESCC
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-hhhhccCCCCCEEECcCCc
Confidence            35666666666665533333334556666666666664222 1111234556666666554

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.31  E-value=6.9e-05  Score=72.57  Aligned_cols=39  Identities=28%  Similarity=0.527  Sum_probs=36.3

Q ss_pred             cCCCcCCCCChH----HHHHHHhcCChHHHHHHhhhhhhhhhh
Q 014317           11 ISEDLINRLPDD----ILVNIISHLTLKEAARTSVLSNRWRNL   49 (427)
Q Consensus        11 ~~~D~is~LPd~----iL~~Ils~L~~~d~~r~s~vskrW~~l   49 (427)
                      -..|.|+.||+|    |+.+||++|+.++.++++.|||+|+++
T Consensus         6 ~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~   48 (435)
T 1p22_A            6 LQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (435)
T ss_dssp             SCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             hhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            357999999999    999999999999999999999999954

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.27  E-value=6.5e-05  Score=67.76  Aligned_cols=146  Identities=15%  Similarity=0.150  Sum_probs=103.7

Q ss_pred             CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEE-EECCceeEE
Q 014317          156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIE-ISAPSLLSF  234 (427)
Q Consensus       156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~-i~~p~L~~L  234 (427)
                      +..+++|+.|++.++.+..-.   -+..++.|+.|++.++.-.+... -..+++|+.|.++++. +..+. +..++|+.|
T Consensus        37 ~~~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~~~~L~~L  111 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQSLA---GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR-LKNLNGIPSACLSRL  111 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC-CSCCTTCCCSSCCEE
T ss_pred             hhhcCcCcEEECcCCCcccch---HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc-cCCcCccccCcccEE
Confidence            356789999999988766422   26789999999999885332111 2356899999999876 33221 112899999


Q ss_pred             EEeeeeeee--eccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceeecccccCCCCceeEEEEEEEccC
Q 014317          235 RYYGQAIKI--NIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLRVTTPN  312 (427)
Q Consensus       235 ~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  312 (427)
                      ++.++....  .+..++.|+.++++.+....+     ..+..+++|+.|++++ +.+.....+..+++|+.|+++.+...
T Consensus       112 ~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~-----~~l~~l~~L~~L~L~~-N~i~~~~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          112 FLDNNELRDTDSLIHLKNLEILSIRNNKLKSI-----VMLGFLSKLEVLDLHG-NEITNTGGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             ECCSSCCSBSGGGTTCTTCCEEECTTSCCCBC-----GGGGGCTTCCEEECTT-SCCCBCTTSTTCCCCCEEEEEEEEEE
T ss_pred             EccCCccCCChhhcCcccccEEECCCCcCCCC-----hHHccCCCCCEEECCC-CcCcchHHhccCCCCCEEeCCCCccc
Confidence            998874322  367789999999988774332     2357899999999998 55553366678899999999776543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.20  E-value=0.00011  Score=74.72  Aligned_cols=74  Identities=15%  Similarity=0.230  Sum_probs=33.4

Q ss_pred             CceeEEEEeeee-----eeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-c-ccccCCCCce
Q 014317          229 PSLLSFRYYGQA-----IKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-M-QFSLFELPKL  301 (427)
Q Consensus       229 p~L~~L~~~~~~-----~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~-~~~~~~~~~L  301 (427)
                      ++|+.|++.+..     .+..+..++.|+.++++.+..   .......+..+++|+.|.|++ +.+. + +..+..+++|
T Consensus       469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L---~~l~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L  544 (635)
T 4g8a_A          469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL---EQLSPTAFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSL  544 (635)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC---CEECTTTTTTCTTCCEEECTT-SCCCBCCCGGGTTCTTC
T ss_pred             hhhhhhhhhhcccccccCchhhhhccccCEEECCCCcc---CCcChHHHcCCCCCCEEECCC-CcCCCCChhHHhCCCCC
Confidence            455555554431     122344455555555555442   112222334555556666555 3333 2 2233445555


Q ss_pred             eEEEE
Q 014317          302 IDLRL  306 (427)
Q Consensus       302 ~~L~l  306 (427)
                      +.|+|
T Consensus       545 ~~L~L  549 (635)
T 4g8a_A          545 QVLDY  549 (635)
T ss_dssp             CEEEC
T ss_pred             CEEEC
Confidence            55555

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.18  E-value=0.00019  Score=62.81  Aligned_cols=84  Identities=17%  Similarity=0.061  Sum_probs=40.6

Q ss_pred             cCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-ccc-ccCCCCceeEEEEEEEccCCCChHHHHHHH
Q 014317          246 ENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQF-SLFELPKLIDLRLRVTTPNRESLLGLTCIM  323 (427)
Q Consensus       246 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll  323 (427)
                      ..++.|+.+++..+...   ......+..+++|+.|+|++ +.+. ++. .+..+++|++|.|+.+.-....    ...+
T Consensus        53 ~~l~~L~~L~Ls~N~i~---~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~----~~~~  124 (220)
T 2v9t_B           53 SPYKKLRRIDLSNNQIS---ELAPDAFQGLRSLNSLVLYG-NKITELPKSLFEGLFSLQLLLLNANKINCLR----VDAF  124 (220)
T ss_dssp             TTCTTCCEEECCSSCCC---EECTTTTTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCC----TTTT
T ss_pred             hCCCCCCEEECCCCcCC---CcCHHHhhCCcCCCEEECCC-CcCCccCHhHccCCCCCCEEECCCCCCCEeC----HHHc
Confidence            44555555555554421   11222345566666666665 3433 332 2345566666666433211110    1223


Q ss_pred             HhCCCccEEEEEec
Q 014317          324 KACPFLQKLILQLN  337 (427)
Q Consensus       324 ~~~p~L~~L~i~~~  337 (427)
                      ..+++|+.|+++.+
T Consensus       125 ~~l~~L~~L~L~~N  138 (220)
T 2v9t_B          125 QDLHNLNLLSLYDN  138 (220)
T ss_dssp             TTCTTCCEEECCSS
T ss_pred             CCCCCCCEEECCCC
Confidence            45667777777654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.18  E-value=0.0001  Score=64.86  Aligned_cols=35  Identities=23%  Similarity=0.087  Sum_probs=20.2

Q ss_pred             CccceeeeccCCCceeE-EEecCccccceEEEEecC
Q 014317          185 PLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCY  219 (427)
Q Consensus       185 p~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~  219 (427)
                      +.|+.|++.++...... ..-..+++|+.|.++++.
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~   75 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ   75 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC
Confidence            77888888877533210 001134667777776654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.05  E-value=0.00026  Score=61.83  Aligned_cols=58  Identities=21%  Similarity=0.204  Sum_probs=29.3

Q ss_pred             ccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCCCceeEEEE
Q 014317          245 IENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKLIDLRL  306 (427)
Q Consensus       245 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~~L~l  306 (427)
                      +.+++.|+.+++..+....   .....+..+++|+.|.+++ +.+.  .+..+..+++|++|+|
T Consensus        77 ~~~l~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L  136 (220)
T 2v70_A           77 FEGASGVNEILLTSNRLEN---VQHKMFKGLESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSL  136 (220)
T ss_dssp             TTTCTTCCEEECCSSCCCC---CCGGGGTTCSSCCEEECTT-SCCCCBCTTSSTTCTTCSEEEC
T ss_pred             hCCCCCCCEEECCCCccCc---cCHhHhcCCcCCCEEECCC-CcCCeECHhHcCCCccCCEEEC
Confidence            3455566666665554221   2222345566666666665 3333  2334455555666555

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.04  E-value=1.8e-05  Score=64.51  Aligned_cols=128  Identities=19%  Similarity=0.168  Sum_probs=60.1

Q ss_pred             CCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEEECCceeEEEEe
Q 014317          158 GIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYY  237 (427)
Q Consensus       158 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~~~  237 (427)
                      .+++|+.|++.++.+.++.+...+..++.|+.|++.+|..... ..-..+++|+.|.++++. +...             
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~-------------   79 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNR-VSGG-------------   79 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSC-CCSC-------------
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCc-ccch-------------
Confidence            3456666666666655333333445666777777766632221 111123455555555443 1110             


Q ss_pred             eeeeeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-ccc----ccCCCCceeEEEE
Q 014317          238 GQAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQF----SLFELPKLIDLRL  306 (427)
Q Consensus       238 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~----~~~~~~~L~~L~l  306 (427)
                         .+..+..++.|+.+++..+.....  .....+..+++|+.|.++++ .+. .+.    .+..+++|+.|++
T Consensus        80 ---~~~~~~~l~~L~~L~ls~N~i~~~--~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           80 ---LEVLAEKCPNLTHLNLSGNKIKDL--STIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             ---THHHHHHCTTCCEEECTTSCCCSH--HHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             ---HHHHhhhCCCCCEEECCCCcCCCh--HHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccC
Confidence               011122344455555544432110  01123456677777777763 333 222    3455666666643

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.01  E-value=0.00011  Score=69.51  Aligned_cols=98  Identities=15%  Similarity=0.229  Sum_probs=44.9

Q ss_pred             CCCcEEEEeeEEeChhhHHHHHh-cCCccceeeeccCCCceeEEE--ecCccccceEEEEecCCccEEEE----ECCcee
Q 014317          160 KFLRCLHFKTVNVNGKDIELFIQ-NCPLLDRLCVDHSKTLVRLRV--IGSSIQLKYLEIQSCYLMEEIEI----SAPSLL  232 (427)
Q Consensus       160 ~~L~~L~L~~~~~~~~~l~~ll~-~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~~~~i----~~p~L~  232 (427)
                      +.++.|+|++..+..-.- ..+. .+++|+.|+|.++.... +.-  -..+++|+.|.++++. +..+.-    ..++|+
T Consensus        39 ~~l~~L~Ls~N~l~~l~~-~~~~~~l~~L~~L~L~~N~i~~-i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~  115 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRA-EWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALE  115 (361)
T ss_dssp             TTCSEEECCSSCCCEECT-TSSSSCCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCC
T ss_pred             CCCCEEECCCCCCCccCh-hhhhhcccccCEEECCCCcCCc-cChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCC
Confidence            456777777665443111 1122 56777777776654221 110  0123556666665544 333311    124455


Q ss_pred             EEEEeeeeee----eeccCCcccceeeeeecc
Q 014317          233 SFRYYGQAIK----INIENVPQLVDVSIRGSH  260 (427)
Q Consensus       233 ~L~~~~~~~~----~~~~~~~~L~~l~l~~~~  260 (427)
                      .|++.++.+.    ..+.+++.|+.+++..+.
T Consensus       116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~  147 (361)
T 2xot_A          116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ  147 (361)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCcccEECHHHhCCcccCCEEECCCCc
Confidence            5544443221    123445555555555544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=96.94  E-value=0.00056  Score=64.28  Aligned_cols=84  Identities=18%  Similarity=0.189  Sum_probs=42.8

Q ss_pred             CCceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE
Q 014317          122 KRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL  201 (427)
Q Consensus       122 ~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l  201 (427)
                      .++++|.+....-.     .+|..         .+.++++|++|+|+++.+...--...+.+++.|.++.+..+..+..+
T Consensus        30 ~~l~~L~Ls~N~i~-----~i~~~---------~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l   95 (350)
T 4ay9_X           30 RNAIELRFVLTKLR-----VIQKG---------AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI   95 (350)
T ss_dssp             TTCSEEEEESCCCS-----EECTT---------SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE
T ss_pred             CCCCEEEccCCcCC-----CcCHH---------HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc
Confidence            46777777654221     23322         34577788888887764321100011345666666555555444433


Q ss_pred             EE--ecCccccceEEEEecC
Q 014317          202 RV--IGSSIQLKYLEIQSCY  219 (427)
Q Consensus       202 ~i--~~~~~~L~~L~l~~c~  219 (427)
                      .-  -..+++|+.|.++++.
T Consensus        96 ~~~~f~~l~~L~~L~l~~n~  115 (350)
T 4ay9_X           96 NPEAFQNLPNLQYLLISNTG  115 (350)
T ss_dssp             CTTSBCCCTTCCEEEEEEEC
T ss_pred             Cchhhhhccccccccccccc
Confidence            11  1234667777776654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=96.88  E-value=0.00026  Score=71.07  Aligned_cols=139  Identities=11%  Similarity=0.047  Sum_probs=86.5

Q ss_pred             CCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEEECCceeEEEEe
Q 014317          158 GIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYY  237 (427)
Q Consensus       158 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~~~  237 (427)
                      .+++|+.|+|+++.+..  +.. +.  .+|+.|++.++....   ++..+++|+.|.++++. +..+.-..++|+.|+++
T Consensus        98 ~l~~L~~L~Ls~N~l~~--ip~-l~--~~L~~L~Ls~N~l~~---lp~~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls  168 (571)
T 3cvr_A           98 LPASLEYLDACDNRLST--LPE-LP--ASLKHLDVDNNQLTM---LPELPALLEYINADNNQ-LTMLPELPTSLEVLSVR  168 (571)
T ss_dssp             CCTTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSSCCSC---CCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECC
T ss_pred             ccCCCCEEEccCCCCCC--cch-hh--cCCCEEECCCCcCCC---CCCcCccccEEeCCCCc-cCcCCCcCCCcCEEECC
Confidence            46899999999887654  222 22  289999998875332   11145789999988776 44443345789999888


Q ss_pred             eeeeeee--ccCCcccceeeeeeccccccchhhc-cccccCCCceEEEEeccceee-cccccCCCCceeEEEEEEE
Q 014317          238 GQAIKIN--IENVPQLVDVSIRGSHTFRVTYFVG-PIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLRVT  309 (427)
Q Consensus       238 ~~~~~~~--~~~~~~L~~l~l~~~~~~~~~~~~~-~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~  309 (427)
                      ++.+...  +.  +.|+.++++.+....+.. +. .+....+.++.|++++ +.+. +|..+..+++|+.|+|+.+
T Consensus       169 ~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp~-~~~~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N  240 (571)
T 3cvr_A          169 NNQLTFLPELP--ESLEALDVSTNLLESLPA-VPVRNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDN  240 (571)
T ss_dssp             SSCCSCCCCCC--TTCCEEECCSSCCSSCCC-CC--------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSS
T ss_pred             CCCCCCcchhh--CCCCEEECcCCCCCchhh-HHHhhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCC
Confidence            7642211  22  678888888776332111 11 1111122339999997 5555 7776767889999988544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=96.82  E-value=8.1e-06  Score=70.30  Aligned_cols=106  Identities=16%  Similarity=0.091  Sum_probs=54.4

Q ss_pred             CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEEECCceeEEE
Q 014317          156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFR  235 (427)
Q Consensus       156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~  235 (427)
                      +..+++|++|+|.++.+..-  . .+..++.|+.|++.++...........+++|+.|.++++. +..+           
T Consensus        44 ~~~l~~L~~L~ls~n~l~~l--~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l-----------  108 (198)
T 1ds9_A           44 LSTLKACKHLALSTNNIEKI--S-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASL-----------  108 (198)
T ss_dssp             HHHTTTCSEEECSEEEESCC--C-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCH-----------
T ss_pred             HhcCCCCCEEECCCCCCccc--c-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcC-----------
Confidence            45677788888887776552  2 3556777777777766321100000112456666655543 2211           


Q ss_pred             EeeeeeeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEec
Q 014317          236 YYGQAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDS  285 (427)
Q Consensus       236 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~  285 (427)
                            + .+..++.|+.+++..+....+..  ...+..+++|+.|.+++
T Consensus       109 ------~-~~~~l~~L~~L~l~~N~i~~~~~--~~~l~~l~~L~~L~l~~  149 (198)
T 1ds9_A          109 ------S-GIEKLVNLRVLYMSNNKITNWGE--IDKLAALDKLEDLLLAG  149 (198)
T ss_dssp             ------H-HHHHHHHSSEEEESEEECCCHHH--HHHHTTTTTCSEEEECS
T ss_pred             ------C-ccccCCCCCEEECCCCcCCchhH--HHHHhcCCCCCEEEecC
Confidence                  0 12344555666555544221110  12345677777777776

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=96.75  E-value=0.00049  Score=65.01  Aligned_cols=143  Identities=19%  Similarity=0.189  Sum_probs=76.4

Q ss_pred             CccceeeeccCCCceeEE---EecCccccceEEEEecCCccEEEE----ECCceeEEEEeeeeeee----eccCCcccce
Q 014317          185 PLLDRLCVDHSKTLVRLR---VIGSSIQLKYLEIQSCYLMEEIEI----SAPSLLSFRYYGQAIKI----NIENVPQLVD  253 (427)
Q Consensus       185 p~Le~L~l~~c~~~~~l~---i~~~~~~L~~L~l~~c~~l~~~~i----~~p~L~~L~~~~~~~~~----~~~~~~~L~~  253 (427)
                      +.++.|+|.++.... +.   +...+++|+.|.++++. +..+..    ..++|++|+++++.+..    .+.+++.|+.
T Consensus        39 ~~l~~L~Ls~N~l~~-l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  116 (361)
T 2xot_A           39 SYTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV  116 (361)
T ss_dssp             TTCSEEECCSSCCCE-ECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCEEECCCCCCCc-cChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCE
Confidence            458888888764322 21   11134778888887765 554432    13677777777664322    2455677777


Q ss_pred             eeeeeccccccchhhccccccCCCceEEEEeccceee-ccccc----CCCCceeEEEEEEEccCCCChHHHHHHHHhCCC
Q 014317          254 VSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSL----FELPKLIDLRLRVTTPNRESLLGLTCIMKACPF  328 (427)
Q Consensus       254 l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~----~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~  328 (427)
                      +++..+...   ......+..+++|+.|.|++ +.+. ++...    ..+++|++|+|+.+.-....    ...+...|.
T Consensus       117 L~L~~N~i~---~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~----~~~~~~l~~  188 (361)
T 2xot_A          117 LLLYNNHIV---VVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP----LTDLQKLPA  188 (361)
T ss_dssp             EECCSSCCC---EECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSSCCCCCC----HHHHHHSCH
T ss_pred             EECCCCccc---EECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC----HHHhhhccH
Confidence            777666532   22223345667777777776 4443 33222    34667777776433221111    123344554


Q ss_pred             --ccEEEEEec
Q 014317          329 --LQKLILQLN  337 (427)
Q Consensus       329 --L~~L~i~~~  337 (427)
                        |+.|.+..+
T Consensus       189 ~~l~~l~l~~N  199 (361)
T 2xot_A          189 WVKNGLYLHNN  199 (361)
T ss_dssp             HHHTTEECCSS
T ss_pred             hhcceEEecCC
Confidence              366666654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=96.63  E-value=0.0012  Score=56.81  Aligned_cols=85  Identities=18%  Similarity=0.245  Sum_probs=45.3

Q ss_pred             ccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cc-cccCCCCceeEEEEEEEccCCCChHHHHHH
Q 014317          245 IENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQ-FSLFELPKLIDLRLRVTTPNRESLLGLTCI  322 (427)
Q Consensus       245 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l  322 (427)
                      +..++.|+.+++..+...   ......+..+++|+.|++++ +.+. .+ ..+..+++|++|+++.+.-..  ..  ...
T Consensus        48 ~~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~--~~~  119 (208)
T 2o6s_A           48 FDELTSLTQLYLGGNKLQ---SLPNGVFNKLTSLTYLNLST-NQLQSLPNGVFDKLTQLKELALNTNQLQS--LP--DGV  119 (208)
T ss_dssp             TTTCTTCSEEECCSSCCC---CCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCC--CC--TTT
T ss_pred             hcccccCcEEECCCCccC---ccChhhcCCCCCcCEEECCC-CcCCccCHhHhcCccCCCEEEcCCCcCcc--cC--HhH
Confidence            345666777766655422   12223345667777777776 3333 32 234566777777764332111  10  122


Q ss_pred             HHhCCCccEEEEEec
Q 014317          323 MKACPFLQKLILQLN  337 (427)
Q Consensus       323 l~~~p~L~~L~i~~~  337 (427)
                      +..+++|++|++..+
T Consensus       120 ~~~l~~L~~L~l~~N  134 (208)
T 2o6s_A          120 FDKLTQLKDLRLYQN  134 (208)
T ss_dssp             TTTCTTCCEEECCSS
T ss_pred             hccCCcCCEEECCCC
Confidence            456777777777654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=96.62  E-value=6.2e-05  Score=71.58  Aligned_cols=136  Identities=10%  Similarity=0.057  Sum_probs=66.9

Q ss_pred             CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCcee-E-EEe----cCccccceEEEEecCCccEEEEECCceeE
Q 014317          160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVR-L-RVI----GSSIQLKYLEIQSCYLMEEIEISAPSLLS  233 (427)
Q Consensus       160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~-l-~i~----~~~~~L~~L~l~~c~~l~~~~i~~p~L~~  233 (427)
                      ++|++|+|+++.+++..+..+...++.|+.|+|.+|.-.+. . .+.    ...++|++|.+++|. +......      
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~------  173 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVA------  173 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHH------
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHH------
Confidence            56777777777776666666666666777777776642210 0 000    112455555555554 2110000      


Q ss_pred             EEEeeeeeeeeccCCcccceeeeeecccccc-chhhccccccCCCceEEEEeccceee------cccccCCCCceeEEEE
Q 014317          234 FRYYGQAIKINIENVPQLVDVSIRGSHTFRV-TYFVGPIISCFPQLKTLELDSCNEVY------MQFSLFELPKLIDLRL  306 (427)
Q Consensus       234 L~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~~~~l~~L~l~~~~~~~------~~~~~~~~~~L~~L~l  306 (427)
                            .....+...+.|+.++++.+..... ...+...+...++|+.|+|++| .+.      +...+...++|++|+|
T Consensus       174 ------~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~L  246 (372)
T 3un9_A          174 ------VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHL  246 (372)
T ss_dssp             ------HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred             ------HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEec
Confidence                  0000112344455555554442110 0122333456677888888773 333      2233445677888877


Q ss_pred             EEE
Q 014317          307 RVT  309 (427)
Q Consensus       307 ~~~  309 (427)
                      +.+
T Consensus       247 s~N  249 (372)
T 3un9_A          247 YFN  249 (372)
T ss_dssp             TTS
T ss_pred             cCC
Confidence            433

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.36  E-value=0.0053  Score=56.98  Aligned_cols=222  Identities=14%  Similarity=0.150  Sum_probs=110.8

Q ss_pred             eeEEEEEEecCCCCCccHHHHHHHHhcCCceEEEEEecCCC--CCccccccc-cc--cccccCCC-CCCC--------CC
Q 014317           95 INEFKVRFDLCDFHQSDITNWVYTVLGKRVQYIKLDLWPGR--YGHYYTFPK-EF--YNSIESGR-GLSG--------IK  160 (427)
Q Consensus        95 l~~l~l~~~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~~--~~~~~~lp~-~~--~~~l~lp~-~~~~--------~~  160 (427)
                      |..+.+......   ..+ +++... ..+++.|++......  ......+|. ..  +....+|. .|.+        ++
T Consensus        27 l~~L~l~g~i~~---~~~-~~l~~~-l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~  101 (329)
T 3sb4_A           27 ITHLTLTGKLNA---EDF-RHLRDE-FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQ  101 (329)
T ss_dssp             CSEEEEEEEECH---HHH-HHHHHS-CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECT
T ss_pred             eeEEEEeccccH---HHH-HHHHHh-hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccC
Confidence            788888754321   112 233221 457888888754321  000011221 00  00123343 4556        89


Q ss_pred             CCcEEEEee-E-EeChhhHHHHHhcCCccceeeeccCCCceeEEEec--Cccccce-----------------EEEEecC
Q 014317          161 FLRCLHFKT-V-NVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIG--SSIQLKY-----------------LEIQSCY  219 (427)
Q Consensus       161 ~L~~L~L~~-~-~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~--~~~~L~~-----------------L~l~~c~  219 (427)
                      +|++|.|.+ + .+++..    +.+|++|+.|.+.+..... +.-.+  .|.++..                 ..+.+|.
T Consensus       102 ~L~~l~L~~~i~~I~~~a----F~~~~~L~~l~l~~n~i~~-i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~  176 (329)
T 3sb4_A          102 TLEKVILSEKIKNIEDAA----FKGCDNLKICQIRKKTAPN-LLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE  176 (329)
T ss_dssp             TCCC-CBCTTCCEECTTT----TTTCTTCCEEEBCCSSCCE-ECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred             CCcEEECCccccchhHHH----hhcCcccceEEcCCCCccc-cchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence            999999986 1 244444    5679999999997553210 00000  1122222                 2233444


Q ss_pred             CccE-EEE---------------ECCceeEEEEeeeeee----eeccCCcccceeeeeeccccccchhhccccccCCCce
Q 014317          220 LMEE-IEI---------------SAPSLLSFRYYGQAIK----INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLK  279 (427)
Q Consensus       220 ~l~~-~~i---------------~~p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~  279 (427)
                      .++. +.+               ...++..+.+.+....    .....++.|+.+++..+...   ..-...+..|++|+
T Consensus       177 ~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~---~I~~~aF~~~~~L~  253 (329)
T 3sb4_A          177 PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT---TIPDFTFAQKKYLL  253 (329)
T ss_dssp             CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC---EECTTTTTTCTTCC
T ss_pred             ccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc---eecHhhhhCCCCCC
Confidence            3331 111               1233444444443111    01123678888888765422   22233457889999


Q ss_pred             EEEEeccceee-cc-cccCCCCcee-EEEEEEEccCCCChHHHHHHHHhCCCccEEEEEe
Q 014317          280 TLELDSCNEVY-MQ-FSLFELPKLI-DLRLRVTTPNRESLLGLTCIMKACPFLQKLILQL  336 (427)
Q Consensus       280 ~L~l~~~~~~~-~~-~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~  336 (427)
                      .|++.. + +. ++ ..+..+.+|+ .+.+...   -....  ...+.+|++|++|.+..
T Consensus       254 ~l~l~~-n-i~~I~~~aF~~~~~L~~~l~l~~~---l~~I~--~~aF~~c~~L~~l~l~~  306 (329)
T 3sb4_A          254 KIKLPH-N-LKTIGQRVFSNCGRLAGTLELPAS---VTAIE--FGAFMGCDNLRYVLATG  306 (329)
T ss_dssp             EEECCT-T-CCEECTTTTTTCTTCCEEEEECTT---CCEEC--TTTTTTCTTEEEEEECS
T ss_pred             EEECCc-c-cceehHHHhhCChhccEEEEEccc---ceEEc--hhhhhCCccCCEEEeCC
Confidence            999986 3 44 33 3457778888 8887321   00110  12357899999999853

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=96.29  E-value=0.00086  Score=57.11  Aligned_cols=37  Identities=11%  Similarity=0.089  Sum_probs=23.4

Q ss_pred             CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCC
Q 014317          160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSK  196 (427)
Q Consensus       160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~  196 (427)
                      ++|++|+|.+..+..-.-...+..++.|+.|++.++.
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~   65 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ   65 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC
T ss_pred             CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC
Confidence            4788888888766432111225567777777777664

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.27  E-value=0.016  Score=54.48  Aligned_cols=10  Identities=0%  Similarity=-0.041  Sum_probs=6.4

Q ss_pred             CceeEEEEee
Q 014317          229 PSLLSFRYYG  238 (427)
Q Consensus       229 p~L~~L~~~~  238 (427)
                      |+|++|.+.+
T Consensus       139 ~~L~~L~l~~  148 (362)
T 2ra8_A          139 AHFEGLFWGD  148 (362)
T ss_dssp             TTCSEEEECC
T ss_pred             chhhheeecC
Confidence            6777776643

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=96.09  E-value=0.0028  Score=53.99  Aligned_cols=52  Identities=17%  Similarity=0.241  Sum_probs=29.8

Q ss_pred             cccCCCceEEEEeccceee-ccc-ccCCCCceeEEEEEEEc--cCCCChHHHHHHHHh
Q 014317          272 ISCFPQLKTLELDSCNEVY-MQF-SLFELPKLIDLRLRVTT--PNRESLLGLTCIMKA  325 (427)
Q Consensus       272 ~~~~~~l~~L~l~~~~~~~-~~~-~~~~~~~L~~L~l~~~~--~~~~~~~~l~~ll~~  325 (427)
                      +..+++|+.|.|++ +.+. ++. .+..+++|++|.++.+.  |.+ ...++...+..
T Consensus        98 f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c-~l~~l~~~~~~  153 (193)
T 2wfh_A           98 FDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANPLYCDC-NMQWLSDWVKS  153 (193)
T ss_dssp             TTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSCEECSG-GGHHHHHHHHH
T ss_pred             hCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCCeecCC-cCHHHHHHHHh
Confidence            45677777777776 4444 333 34566777777775432  222 44555555543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=96.09  E-value=0.0021  Score=54.73  Aligned_cols=60  Identities=20%  Similarity=0.240  Sum_probs=25.3

Q ss_pred             ccCCCceEEEEeccceee-c-ccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317          273 SCFPQLKTLELDSCNEVY-M-QFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLN  337 (427)
Q Consensus       273 ~~~~~l~~L~l~~~~~~~-~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  337 (427)
                      ..+++|+.|++++ +.+. + +..+..+++|++|.|+.+.-....    ...+...++|+.|+++.+
T Consensus        51 ~~l~~L~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~----~~~f~~l~~L~~L~L~~N  112 (193)
T 2wfh_A           51 SNYKHLTLIDLSN-NRISTLSNQSFSNMTQLLTLILSYNRLRCIP----PRTFDGLKSLRLLSLHGN  112 (193)
T ss_dssp             GGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCBCC----TTTTTTCTTCCEEECCSS
T ss_pred             hcccCCCEEECCC-CcCCEeCHhHccCCCCCCEEECCCCccCEeC----HHHhCCCCCCCEEECCCC
Confidence            3445555555554 3333 1 223344455555555322111100    112345566666666543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.08  E-value=0.0016  Score=55.10  Aligned_cols=126  Identities=17%  Similarity=0.149  Sum_probs=74.9

Q ss_pred             hhhccccccCCCceEEEEeccceee------cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccC
Q 014317          266 YFVGPIISCFPQLKTLELDSCNEVY------MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDH  339 (427)
Q Consensus       266 ~~~~~~~~~~~~l~~L~l~~~~~~~------~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~  339 (427)
                      ..+...+...++++.|+|++|..+.      +...+...++|++|+|+.+.-++.....+...+...++|++|+|+.+.-
T Consensus        26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i  105 (185)
T 1io0_A           26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI  105 (185)
T ss_dssp             HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence            3455666788888888888742443      3444566778888888544333334445666777888999998875531


Q ss_pred             CCCCCc--ccccCCCCccCCccEEEE--ecee-cCccHHHHHHHHHhccccccceEEEeec
Q 014317          340 GRRLGK--KRQQFPKYSHQHLKVVEL--HGFL-GRQFDVELAQYLFQNATMLEKLIIEPSR  395 (427)
Q Consensus       340 ~~~~~~--~~~~~~~~~~~~L~~v~i--~~f~-g~~~e~~~~~~ll~~a~~L~~l~i~~~~  395 (427)
                      .. .|.  .-..+.  ...+|+++.+  .+-. |.+....++ -.+...+.|+++.+..+.
T Consensus       106 ~~-~g~~~l~~~L~--~n~~L~~L~L~~~~N~i~~~g~~~l~-~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          106 SG-SGILALVEALQ--SNTSLIELRIDNQSQPLGNNVEMEIA-NMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             CH-HHHHHHHHGGG--GCSSCCEEECCCCSSCCCHHHHHHHH-HHHHHCSSCCEEECCCSS
T ss_pred             CH-HHHHHHHHHHH--hCCCceEEEecCCCCCCCHHHHHHHH-HHHHhCCCcCEEeccCCC
Confidence            11 110  001011  2347888888  4333 333323333 455667889999987655

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=96.04  E-value=0.0043  Score=52.65  Aligned_cols=61  Identities=23%  Similarity=0.266  Sum_probs=33.8

Q ss_pred             ccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCCCceeEEEEEEE
Q 014317          245 IENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKLIDLRLRVT  309 (427)
Q Consensus       245 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~  309 (427)
                      +.+++.|+.+++..+...   ......+..+++|+.|++++ +.+.  .+..+..+++|++|+++.+
T Consensus        74 ~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A           74 FEGASHIQELQLGENKIK---EISNKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             TTTCTTCCEEECCSCCCC---EECSSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             cCCcccCCEEECCCCcCC---ccCHHHhcCCCCCCEEECCC-CcCCeeCHHHhhcCCCCCEEEeCCC
Confidence            445566666666655522   22223345667777777776 4443  3445566667777766443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=95.99  E-value=0.0027  Score=63.75  Aligned_cols=13  Identities=15%  Similarity=-0.000  Sum_probs=9.8

Q ss_pred             HHHhcCCccceee
Q 014317          179 LFIQNCPLLDRLC  191 (427)
Q Consensus       179 ~ll~~cp~Le~L~  191 (427)
                      ..++.++.|+.|+
T Consensus       403 ~~l~~l~~L~~L~  415 (567)
T 1dce_A          403 ETLQYFSTLKAVD  415 (567)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHhcccCc
Confidence            4566788888888

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=95.95  E-value=0.0036  Score=52.25  Aligned_cols=14  Identities=29%  Similarity=0.320  Sum_probs=7.9

Q ss_pred             HhCCCccEEEEEec
Q 014317          324 KACPFLQKLILQLN  337 (427)
Q Consensus       324 ~~~p~L~~L~i~~~  337 (427)
                      ..+++|+.|+++.+
T Consensus        97 ~~l~~L~~L~l~~N  110 (177)
T 2o6r_A           97 DKLTQLKELALDTN  110 (177)
T ss_dssp             TTCTTCCEEECCSS
T ss_pred             hCCcccCEEECcCC
Confidence            45566666666543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=95.76  E-value=0.0022  Score=54.22  Aligned_cols=88  Identities=14%  Similarity=0.100  Sum_probs=41.6

Q ss_pred             cCCcccceeeeeec-cccc-cchhhccccccCCCceEEEEeccceee------cccccCCCCceeEEEEEEEccCCCChH
Q 014317          246 ENVPQLVDVSIRGS-HTFR-VTYFVGPIISCFPQLKTLELDSCNEVY------MQFSLFELPKLIDLRLRVTTPNRESLL  317 (427)
Q Consensus       246 ~~~~~L~~l~l~~~-~~~~-~~~~~~~~~~~~~~l~~L~l~~~~~~~------~~~~~~~~~~L~~L~l~~~~~~~~~~~  317 (427)
                      ...+.|+++++..+ .... -...+...+...++|+.|+|++ ..+.      +...+...++|++|+|+.+.-+.....
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~-n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVG-TRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTT-SCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcC-CCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            34455555555544 3211 0012233334556666666665 2332      223334445666666644333222333


Q ss_pred             HHHHHHHhCCCccEEEE
Q 014317          318 GLTCIMKACPFLQKLIL  334 (427)
Q Consensus       318 ~l~~ll~~~p~L~~L~i  334 (427)
                      .+...+...++|++|+|
T Consensus       112 ~l~~~L~~n~~L~~L~L  128 (185)
T 1io0_A          112 ALVEALQSNTSLIELRI  128 (185)
T ss_dssp             HHHHGGGGCSSCCEEEC
T ss_pred             HHHHHHHhCCCceEEEe
Confidence            34455556666777666

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=95.66  E-value=0.00098  Score=66.98  Aligned_cols=119  Identities=16%  Similarity=0.212  Sum_probs=71.5

Q ss_pred             CCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEEECCceeEEEEeeee
Q 014317          161 FLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYYGQA  240 (427)
Q Consensus       161 ~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~~~~~~  240 (427)
                      .|+.|+|+++.+..  +.. +..++.|+.|++.++....-...-..+++|+.|.++++. +..+                
T Consensus       442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~l----------------  501 (567)
T 1dce_A          442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENV----------------  501 (567)
T ss_dssp             TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCC----------------
T ss_pred             CceEEEecCCCCCC--CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCC----------------
Confidence            58888888877654  223 677888999998877533110111245778888887665 3322                


Q ss_pred             eeeeccCCcccceeeeeeccccccchhh-ccccccCCCceEEEEeccceee-cccc----cCCCCceeEEE
Q 014317          241 IKINIENVPQLVDVSIRGSHTFRVTYFV-GPIISCFPQLKTLELDSCNEVY-MQFS----LFELPKLIDLR  305 (427)
Q Consensus       241 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~-~~~~~~~~~l~~L~l~~~~~~~-~~~~----~~~~~~L~~L~  305 (427)
                       + .+.+++.|+.++++.+....   .. ...+..+++|+.|.+++ +.+. .+..    ...+++|+.|+
T Consensus       502 -p-~l~~l~~L~~L~Ls~N~l~~---~~~p~~l~~l~~L~~L~L~~-N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          502 -D-GVANLPRLQELLLCNNRLQQ---SAAIQPLVSCPRLVLLNLQG-NSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             -G-GGTTCSSCCEEECCSSCCCS---SSTTGGGGGCTTCCEEECTT-SGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             -c-ccCCCCCCcEEECCCCCCCC---CCCcHHHhcCCCCCEEEecC-CcCCCCccHHHHHHHHCcccCccC
Confidence             1 24566777777776665322   11 33456788888888887 4443 2221    23467777774

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=95.63  E-value=0.0019  Score=55.22  Aligned_cols=17  Identities=24%  Similarity=0.147  Sum_probs=10.9

Q ss_pred             HHHHHHHhccccccceE
Q 014317          374 ELAQYLFQNATMLEKLI  390 (427)
Q Consensus       374 ~~~~~ll~~a~~L~~l~  390 (427)
                      .+...++.+.+.|+.+.
T Consensus       164 ~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          164 EYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHHHHHCSSCSEEC
T ss_pred             HHHHHHHHhCCCcEEEC
Confidence            34455667777777664

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=95.62  E-value=0.013  Score=48.62  Aligned_cols=97  Identities=16%  Similarity=0.202  Sum_probs=56.2

Q ss_pred             CceeEEEEeeeeee----eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-ccc-ccCCCCcee
Q 014317          229 PSLLSFRYYGQAIK----INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQF-SLFELPKLI  302 (427)
Q Consensus       229 p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~-~~~~~~~L~  302 (427)
                      ++|++|++.+..+.    ..+.+++.|+.+++..+....   .....+..+++|+.|+|++ +.+. ++. .+..+++|+
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~---l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~  105 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV---LPAGVFDKLTQLTQLSLND-NQLKSIPRGAFDNLKSLT  105 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC---CCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc---cChhhccCCCCCCEEECCC-CccCEeCHHHhcCCCCCC
Confidence            45666666554322    234567778888777766322   2233346778888888887 5554 333 456777888


Q ss_pred             EEEEEEEccCCC--ChHHHHHHHHhCCCc
Q 014317          303 DLRLRVTTPNRE--SLLGLTCIMKACPFL  329 (427)
Q Consensus       303 ~L~l~~~~~~~~--~~~~l~~ll~~~p~L  329 (427)
                      +|.|+.+.-.+.  +..++...++..+.+
T Consensus       106 ~L~L~~N~~~c~c~~l~~l~~~l~~~~~~  134 (170)
T 3g39_A          106 HIWLLNNPWDCACSDILYLSRWISQHPGL  134 (170)
T ss_dssp             EEECCSSCBCTTBGGGHHHHHHHHHCGGG
T ss_pred             EEEeCCCCCCCCchhHHHHHHHHHhCcce
Confidence            888755433222  345555555554443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=95.48  E-value=0.0014  Score=68.02  Aligned_cols=142  Identities=12%  Similarity=0.073  Sum_probs=59.1

Q ss_pred             CCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCce-----eEEEecCccccceEEEEecCCccEEE---EECCc
Q 014317          159 IKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLV-----RLRVIGSSIQLKYLEIQSCYLMEEIE---ISAPS  230 (427)
Q Consensus       159 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~-----~l~i~~~~~~L~~L~l~~c~~l~~~~---i~~p~  230 (427)
                      -+.+++|.|....+...  ...+.....|..+.|.......     .......++.|+.|.++++. +..+.   ...++
T Consensus       172 ~~~~~~l~L~~n~~~~~--~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~  248 (727)
T 4b8c_D          172 TPLTPKIELFANGKDEA--NQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDF  248 (727)
T ss_dssp             ----------------------------------------------------CCCCCCEEECTTSC-CSCCCGGGGGCCS
T ss_pred             CCccceEEeeCCCCCcc--hhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCC-CCCCChhhcCCCC
Confidence            36788888876655432  1112223344444443321110     00111234678888877665 33221   13467


Q ss_pred             eeEEEEeeeee---eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeEEEE
Q 014317          231 LLSFRYYGQAI---KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRL  306 (427)
Q Consensus       231 L~~L~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l  306 (427)
                      |++|+++++.+   +..+.+++.|+.|+++.+...    .+..-+..+++|+.|.|++ +.+. ++..+..+++|++|+|
T Consensus       249 L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~----~lp~~~~~l~~L~~L~L~~-N~l~~lp~~~~~l~~L~~L~L  323 (727)
T 4b8c_D          249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT----SLPAELGSCFQLKYFYFFD-NMVTTLPWEFGNLCNLQFLGV  323 (727)
T ss_dssp             CSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS----SCCSSGGGGTTCSEEECCS-SCCCCCCSSTTSCTTCCCEEC
T ss_pred             CCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC----ccChhhcCCCCCCEEECCC-CCCCccChhhhcCCCccEEeC
Confidence            77777776533   233556777777777766632    2233346677788888876 3444 5656667777777777


Q ss_pred             EE
Q 014317          307 RV  308 (427)
Q Consensus       307 ~~  308 (427)
                      +.
T Consensus       324 ~~  325 (727)
T 4b8c_D          324 EG  325 (727)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=95.39  E-value=0.0035  Score=64.99  Aligned_cols=57  Identities=11%  Similarity=0.020  Sum_probs=37.1

Q ss_pred             CceeEEEEeeee---eeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee
Q 014317          229 PSLLSFRYYGQA---IKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY  290 (427)
Q Consensus       229 p~L~~L~~~~~~---~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~  290 (427)
                      ++|+.|+++++.   ++..+.+++.|+.+.+..+....    +..-+..+++|+.|.|++ +.+.
T Consensus       270 ~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~----lp~~~~~l~~L~~L~L~~-N~l~  329 (727)
T 4b8c_D          270 SNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTT----LPWEFGNLCNLQFLGVEG-NPLE  329 (727)
T ss_dssp             TTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCC----CCSSTTSCTTCCCEECTT-SCCC
T ss_pred             CCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCc----cChhhhcCCCccEEeCCC-CccC
Confidence            445555554442   23345778899999998876322    333367899999999998 4443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=95.28  E-value=0.023  Score=47.26  Aligned_cols=101  Identities=18%  Similarity=0.213  Sum_probs=66.8

Q ss_pred             CceeEEEEeeeeeee----eccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cc-cccCCCCcee
Q 014317          229 PSLLSFRYYGQAIKI----NIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQ-FSLFELPKLI  302 (427)
Q Consensus       229 p~L~~L~~~~~~~~~----~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~-~~~~~~~~L~  302 (427)
                      ++|++|++.+.....    .+..++.|+.+++..+...   ......+..+++|+.|++++ +.+. .+ ..+..+++|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~  103 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ---SLPDGVFDKLTKLTILYLHE-NKLQSLPNGVFDKLTQLK  103 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC---CCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce---EeChhHccCCCccCEEECCC-CCccccCHHHhhCCcccC
Confidence            688899888764321    2466788999999877632   22333456889999999998 5555 33 3457788999


Q ss_pred             EEEEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317          303 DLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLN  337 (427)
Q Consensus       303 ~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  337 (427)
                      +|+++.+.-..  ..  ...+..+++|++|+++.+
T Consensus       104 ~L~l~~N~l~~--~~--~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A          104 ELALDTNQLKS--VP--DGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             EEECCSSCCSC--CC--TTTTTTCTTCCEEECCSS
T ss_pred             EEECcCCcceE--eC--HHHhcCCcccCEEEecCC
Confidence            99985442221  11  123466788888888654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=95.07  E-value=0.011  Score=56.44  Aligned_cols=57  Identities=16%  Similarity=0.297  Sum_probs=26.2

Q ss_pred             cccCCCceEEEEeccceee------cc-cccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEE
Q 014317          272 ISCFPQLKTLELDSCNEVY------MQ-FSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLIL  334 (427)
Q Consensus       272 ~~~~~~l~~L~l~~~~~~~------~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i  334 (427)
                      +..|++|+.+.+.. ....      ++ ..+..+++|+.+.+.    ......+ ...+.+|++|+.+.|
T Consensus       267 F~~c~~L~~l~l~~-~~~~~~~~~~I~~~aF~~c~~L~~l~l~----~~i~~I~-~~aF~~c~~L~~l~l  330 (401)
T 4fdw_A          267 FYYCPELAEVTTYG-STFNDDPEAMIHPYCLEGCPKLARFEIP----ESIRILG-QGLLGGNRKVTQLTI  330 (401)
T ss_dssp             TTTCTTCCEEEEES-SCCCCCTTCEECTTTTTTCTTCCEECCC----TTCCEEC-TTTTTTCCSCCEEEE
T ss_pred             hhCCCCCCEEEeCC-ccccCCcccEECHHHhhCCccCCeEEeC----CceEEEh-hhhhcCCCCccEEEE
Confidence            35666666666654 2211      22 233455566666552    1100000 112356666776666

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=94.68  E-value=0.038  Score=45.93  Aligned_cols=78  Identities=13%  Similarity=0.147  Sum_probs=43.5

Q ss_pred             CceeEEEEeeeeee----eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-ccc-ccCCCCcee
Q 014317          229 PSLLSFRYYGQAIK----INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQF-SLFELPKLI  302 (427)
Q Consensus       229 p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~-~~~~~~~L~  302 (427)
                      ++|+.|++.+..+.    ..+.+++.|+.+++..+....   .....+..+++|+.|+|++ +.+. ++. .+..+++|+
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---i~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~  108 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA---IPTGVFDKLTQLTQLDLND-NHLKSIPRGAFDNLKSLT  108 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCS
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc---cChhHhCCcchhhEEECCC-CccceeCHHHhccccCCC
Confidence            45666665554321    234566677777776665322   2223345677777777776 4444 333 355667777


Q ss_pred             EEEEEEEc
Q 014317          303 DLRLRVTT  310 (427)
Q Consensus       303 ~L~l~~~~  310 (427)
                      +|.|+.+.
T Consensus       109 ~L~L~~N~  116 (174)
T 2r9u_A          109 HIYLYNNP  116 (174)
T ss_dssp             EEECCSSC
T ss_pred             EEEeCCCC
Confidence            77775443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=94.65  E-value=0.074  Score=49.07  Aligned_cols=22  Identities=23%  Similarity=0.306  Sum_probs=13.3

Q ss_pred             hhhHHHHHhcCCccceeeeccC
Q 014317          174 GKDIELFIQNCPLLDRLCVDHS  195 (427)
Q Consensus       174 ~~~l~~ll~~cp~Le~L~l~~c  195 (427)
                      ..++..+...|+.|+.|++.++
T Consensus       215 ~~~~~~l~~~~~~L~~l~L~~n  236 (329)
T 3sb4_A          215 NADFKLIRDYMPNLVSLDISKT  236 (329)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTB
T ss_pred             HHHHHHHHHhcCCCeEEECCCC
Confidence            3344444555777777777654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=92.69  E-value=0.023  Score=47.29  Aligned_cols=54  Identities=15%  Similarity=0.231  Sum_probs=23.8

Q ss_pred             cccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccc-cCCCCceeEEEE
Q 014317          249 PQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFS-LFELPKLIDLRL  306 (427)
Q Consensus       249 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~-~~~~~~L~~L~l  306 (427)
                      +.|+.+++..+....   .....+..+++|+.|+|++ +.+. ++.. +..+++|++|+|
T Consensus        33 ~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L   88 (174)
T 2r9u_A           33 TDKQRLWLNNNQITK---LEPGVFDHLVNLQQLYFNS-NKLTAIPTGVFDKLTQLTQLDL   88 (174)
T ss_dssp             TTCSEEECCSSCCCC---CCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCCccc---cCHHHhcCCcCCCEEECCC-CCCCccChhHhCCcchhhEEEC
Confidence            445555555444211   1222334555555555555 3333 2222 234455555554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=92.67  E-value=0.061  Score=44.40  Aligned_cols=13  Identities=38%  Similarity=0.598  Sum_probs=6.5

Q ss_pred             ccCCCceEEEEec
Q 014317          273 SCFPQLKTLELDS  285 (427)
Q Consensus       273 ~~~~~l~~L~l~~  285 (427)
                      ..+++|+.|+|++
T Consensus        51 ~~l~~L~~L~Ls~   63 (170)
T 3g39_A           51 DRLTQLTRLDLDN   63 (170)
T ss_dssp             TTCTTCSEEECCS
T ss_pred             cCcccCCEEECCC
Confidence            3445555555554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=90.93  E-value=0.59  Score=44.41  Aligned_cols=166  Identities=12%  Similarity=0.094  Sum_probs=98.8

Q ss_pred             CCCCCCCCcEEEEeeE---EeChhhHHHHHhcCCccceeeeccCCCceeEEEec--CccccceEEEEecCCccEEEEEC-
Q 014317          155 GLSGIKFLRCLHFKTV---NVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIG--SSIQLKYLEIQSCYLMEEIEISA-  228 (427)
Q Consensus       155 ~~~~~~~L~~L~L~~~---~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~--~~~~L~~L~l~~c~~l~~~~i~~-  228 (427)
                      +|.+|++|+.+.|...   .+....+.     |..|+.+.+.+.  +..+.-.+  .|++|+.+.+..  ++..+.-.| 
T Consensus       175 aF~~c~~L~~l~l~~n~l~~I~~~aF~-----~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF  245 (401)
T 4fdw_A          175 IFYYCYNLKKADLSKTKITKLPASTFV-----YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAF  245 (401)
T ss_dssp             TTTTCTTCCEEECTTSCCSEECTTTTT-----TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCT--TCCEECTTTT
T ss_pred             HhhCcccCCeeecCCCcceEechhhEe-----ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCC--CccCcccccc
Confidence            5678899999999753   24455543     788999988632  22222111  356777777653  233332221 


Q ss_pred             --CceeEEEEeeeee---eeeccCCcccceeeeeeccccc--cchhhccccccCCCceEEEEeccceee-cc-cccCCCC
Q 014317          229 --PSLLSFRYYGQAI---KINIENVPQLVDVSIRGSHTFR--VTYFVGPIISCFPQLKTLELDSCNEVY-MQ-FSLFELP  299 (427)
Q Consensus       229 --p~L~~L~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~--~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~-~~~~~~~  299 (427)
                        .+|+.+.+.....   ...+.+++.|+.+.+.......  ....-...+..|++|+.+.+..  .+. +. ..+..+.
T Consensus       246 ~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~  323 (401)
T 4fdw_A          246 RESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNR  323 (401)
T ss_dssp             TTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCC
T ss_pred             ccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCC
Confidence              5677777744321   2356788999999887644210  1112234457899999999984  344 33 3456778


Q ss_pred             ceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317          300 KLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLN  337 (427)
Q Consensus       300 ~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  337 (427)
                      +|+.+.|..+   -..+.  ...+.+| +|+++.+..+
T Consensus       324 ~L~~l~lp~~---l~~I~--~~aF~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          324 KVTQLTIPAN---VTQIN--FSAFNNT-GIKEVKVEGT  355 (401)
T ss_dssp             SCCEEEECTT---CCEEC--TTSSSSS-CCCEEEECCS
T ss_pred             CccEEEECcc---ccEEc--HHhCCCC-CCCEEEEcCC
Confidence            8999888211   10110  1234678 9999999765

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=90.54  E-value=0.25  Score=45.69  Aligned_cols=76  Identities=17%  Similarity=0.174  Sum_probs=44.3

Q ss_pred             ccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeEEEEEEEccCCC-ChHHHHHH
Q 014317          245 IENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLRVTTPNRE-SLLGLTCI  322 (427)
Q Consensus       245 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l  322 (427)
                      +.++++|+.|+++.+..   .......+..+++|+.|+|++ +.+. ++.......+|+.|.|..+.-.+. .+.++...
T Consensus        52 ~~~l~~L~~L~l~~N~l---~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~  127 (347)
T 2ifg_A           52 LRGLGELRNLTIVKSGL---RFVAPDAFHFTPRLSRLNLSF-NALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRW  127 (347)
T ss_dssp             SCSCCCCSEEECCSSCC---CEECTTGGGSCSCCCEEECCS-SCCSCCCSTTTCSCCCCEEECCSSCCCCCGGGHHHHHH
T ss_pred             hccccCCCEEECCCCcc---ceeCHHHhcCCcCCCEEeCCC-CccceeCHHHcccCCceEEEeeCCCccCCCccHHHHHH
Confidence            56677788888877663   223334456788888888887 5555 443332222388888754433222 34445444


Q ss_pred             HH
Q 014317          323 MK  324 (427)
Q Consensus       323 l~  324 (427)
                      ++
T Consensus       128 ~~  129 (347)
T 2ifg_A          128 EE  129 (347)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=90.07  E-value=0.11  Score=46.42  Aligned_cols=85  Identities=25%  Similarity=0.350  Sum_probs=47.6

Q ss_pred             CCcccceeeeeeccccccchhhccccccCCCceEEEEeccceeecccccCCCC--ceeEEEEEEEccCCC---ChHHHHH
Q 014317          247 NVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFELP--KLIDLRLRVTTPNRE---SLLGLTC  321 (427)
Q Consensus       247 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~---~~~~l~~  321 (427)
                      ++|.|+.+.++.+....+. .+..++..+++|+.|.|++ +.+.....+..+.  +|++|.|..+.....   .......
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~-~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLD-DMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCG-GGTTHHHHSTTCCEEECTT-SCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCc-cchhHHhhCCCCCEEECCC-CccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            4555666666555532211 2334456788899999987 5555222222233  788888744322110   1122346


Q ss_pred             HHHhCCCccEEE
Q 014317          322 IMKACPFLQKLI  333 (427)
Q Consensus       322 ll~~~p~L~~L~  333 (427)
                      ++..+|+|+.|+
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            788899999875

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=86.11  E-value=0.18  Score=46.78  Aligned_cols=85  Identities=18%  Similarity=0.187  Sum_probs=49.5

Q ss_pred             ccCCcccceeeeee-ccccccchhhccccccCCCceEEEEeccceee--cccccCCCCceeEEEEEEEccCCCChHHHHH
Q 014317          245 IENVPQLVDVSIRG-SHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKLIDLRLRVTTPNRESLLGLTC  321 (427)
Q Consensus       245 ~~~~~~L~~l~l~~-~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  321 (427)
                      +..+.+|+.|++.. +..   .......+..+++|+.|+|++ +.+.  .+..+..+++|++|+|+.+.-....    ..
T Consensus        27 l~~~~~L~~L~l~~~n~l---~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~----~~   98 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHL---QHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNLSFNALESLS----WK   98 (347)
T ss_dssp             SCSCSCCSEEECCSCSSC---CEECGGGSCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEECCSSCCSCCC----ST
T ss_pred             CCCCCCeeEEEccCCCCC---CCcChhHhccccCCCEEECCC-CccceeCHHHhcCCcCCCEEeCCCCccceeC----HH
Confidence            34455677777764 442   222233456888999999987 5555  3345677888888888544322110    11


Q ss_pred             HHHhCCCccEEEEEecc
Q 014317          322 IMKACPFLQKLILQLND  338 (427)
Q Consensus       322 ll~~~p~L~~L~i~~~~  338 (427)
                      ++...+ |+.|.+..+.
T Consensus        99 ~~~~~~-L~~l~l~~N~  114 (347)
T 2ifg_A           99 TVQGLS-LQELVLSGNP  114 (347)
T ss_dssp             TTCSCC-CCEEECCSSC
T ss_pred             HcccCC-ceEEEeeCCC
Confidence            223333 8888887653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=81.89  E-value=0.15  Score=43.10  Aligned_cols=126  Identities=14%  Similarity=0.105  Sum_probs=74.4

Q ss_pred             hhhccccccCCCceEEEEeccceee------cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccC
Q 014317          266 YFVGPIISCFPQLKTLELDSCNEVY------MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDH  339 (427)
Q Consensus       266 ~~~~~~~~~~~~l~~L~l~~~~~~~------~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~  339 (427)
                      ..+..++..-+.|+.|.|+.+..+.      +.+.+..-..|+.|+|+.+.-++.....+...|+.-..|++|+|+.+.-
T Consensus        31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I  110 (197)
T 1pgv_A           31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL  110 (197)
T ss_dssp             HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred             HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence            3455566777888888887532443      3444555567888888544444334455677788888899998875431


Q ss_pred             CCCCCc--ccccCCCCccCCccEEEEec----eecCccHHHHHHHHHhccccccceEEEeec
Q 014317          340 GRRLGK--KRQQFPKYSHQHLKVVELHG----FLGRQFDVELAQYLFQNATMLEKLIIEPSR  395 (427)
Q Consensus       340 ~~~~~~--~~~~~~~~~~~~L~~v~i~~----f~g~~~e~~~~~~ll~~a~~L~~l~i~~~~  395 (427)
                      .+ .|-  .-.++.  .-..|+++.+.+    ..|.+...++++.+-.| +.|.++.+....
T Consensus       111 g~-~Ga~ala~aL~--~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N-~tL~~L~l~~~~  168 (197)
T 1pgv_A          111 TP-ELLARLLRSTL--VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEEN-ESLLRVGISFAS  168 (197)
T ss_dssp             CH-HHHHHHHHHTT--TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHC-SSCCEEECCCCC
T ss_pred             CH-HHHHHHHHHHh--hCCceeEEECCCCcCcCcCHHHHHHHHHHHHhC-CCcCeEeccCCC
Confidence            11 111  000011  234588888864    23555556677666544 568888876544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=80.19  E-value=0.99  Score=42.54  Aligned_cols=98  Identities=20%  Similarity=0.268  Sum_probs=53.9

Q ss_pred             cccCCCceEEEEeccceee-cc-cccCCCCceeEEEEEEEccCCC-ChHHHHHHHHhCCCccEEEEEeccCCCCCCcccc
Q 014317          272 ISCFPQLKTLELDSCNEVY-MQ-FSLFELPKLIDLRLRVTTPNRE-SLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQ  348 (427)
Q Consensus       272 ~~~~~~l~~L~l~~~~~~~-~~-~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~  348 (427)
                      +..+.+|+.+.+..  .+. +. ..+..+.+|+.+.|.    ... ...  ...+.+|.+|+++.|...  ....+  ..
T Consensus       293 F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp----~~v~~I~--~~aF~~c~~L~~i~lp~~--l~~I~--~~  360 (394)
T 4fs7_A          293 FYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLP----YLVEEIG--KRSFRGCTSLSNINFPLS--LRKIG--AN  360 (394)
T ss_dssp             TTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCC----TTCCEEC--TTTTTTCTTCCEECCCTT--CCEEC--TT
T ss_pred             cccccccccccccc--ccceechhhhcCCCCCCEEEeC----CcccEEh--HHhccCCCCCCEEEECcc--ccEeh--HH
Confidence            46788899988864  333 33 334667888888762    111 110  123468999999887421  11000  11


Q ss_pred             cCCCCccCCccEEEEeceecCccHHHHHHHHHhccccccce
Q 014317          349 QFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKL  389 (427)
Q Consensus       349 ~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l  389 (427)
                      ++..  +.+|+.|.+..-      +....+-+.+++.||.+
T Consensus       361 aF~~--C~~L~~i~lp~~------~~~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          361 AFQG--CINLKKVELPKR------LEQYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TBTT--CTTCCEEEEEGG------GGGGGGGBCTTCEEEEE
T ss_pred             HhhC--CCCCCEEEECCC------CEEhhheecCCCCCcEE
Confidence            1222  357888887532      11122446778888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	427
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	1e-06
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	2e-05
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	9e-05

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.6 bits (105), Expect = 1e-06
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 14 DLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTNSL 56
          DLI  LP +I + I ++L  ++   +  +S  W  +   + SL
Sbjct: 4  DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL 46

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (96), Expect = 2e-05
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 14 DLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNL 49
          D I+ LP ++ + ++S L  K+  + +     WR L
Sbjct: 17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (87), Expect = 9e-05
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 17 NRLPDDILVNIISHLTLKEAARTSVLSNRWRNL 49
          + LPD++L+ I S L L E  + S +  RW  L
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL 34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	427
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.13
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.11
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.06
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.72
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.69
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.29
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.27
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.18
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.17
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.14
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.11
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.11
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.0
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.97
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.86
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.71
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.69
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.68
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.67
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.67
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.61
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.53
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.46
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.37
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.28
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.07
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.02
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	96.69
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	96.65
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.42
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	96.06
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.0
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	95.86
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	95.73
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.69
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	95.64
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	95.62
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.49
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.35
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.18
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	95.15
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	92.41
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	88.77
d2ifga3	156	High affinity nerve growth factor receptor, N-term	88.74
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	84.41

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.1e-12  Score=118.65  Aligned_cols=64  Identities=9%  Similarity=0.185  Sum_probs=42.2

Q ss_pred             CCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCce-eEEEecCccccceEEEEecCCc
Q 014317          158 GIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLV-RLRVIGSSIQLKYLEIQSCYLM  221 (427)
Q Consensus       158 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~-~l~i~~~~~~L~~L~l~~c~~l  221 (427)
                      ...+|++|+|+++.+.++.+..+++.||+|++|.+.+|...+ .+..-+.+++|++|.+++|..+
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~i  108 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF  108 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccc
Confidence            345788888888777777777788888888888888774221 1111123467777777776554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=3e-12  Score=115.76  Aligned_cols=168  Identities=18%  Similarity=0.230  Sum_probs=111.4

Q ss_pred             CCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE---EEecCccccceEEEEecCCccE------EEEE
Q 014317          157 SGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL---RVIGSSIQLKYLEIQSCYLMEE------IEIS  227 (427)
Q Consensus       157 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l---~i~~~~~~L~~L~l~~c~~l~~------~~i~  227 (427)
                      ..+++|++|+|.++.+.+..+.. ++.+|+|+.|++.+|.++++.   .+...|++|++|.+++|..+..      +.-.
T Consensus        68 ~~c~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~  146 (284)
T d2astb2          68 SQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  146 (284)
T ss_dssp             TTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             HhCCCcccccccccCCCcHHHHH-HhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccc
Confidence            46788888888888877766655 456888888888888776532   2223568888888888875432      1112


Q ss_pred             CCceeEEEEeeee-------eeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCC
Q 014317          228 APSLLSFRYYGQA-------IKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFEL  298 (427)
Q Consensus       228 ~p~L~~L~~~~~~-------~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~  298 (427)
                      +|+|+.|.+.|+.       ......++|+|+++++..+..  +.......+..+++|+.|.+++|..+.  ....+..+
T Consensus       147 ~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~--itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~  224 (284)
T d2astb2         147 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM--LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI  224 (284)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT--CCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccC--CCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcC
Confidence            5788888887642       111235678888888876432  222223334578999999999887765  33445678


Q ss_pred             CceeEEEEEEEccCCCChHHHHHHHHhCCCccE
Q 014317          299 PKLIDLRLRVTTPNRESLLGLTCIMKACPFLQK  331 (427)
Q Consensus       299 ~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~  331 (427)
                      ++|++|++..  +  ....++..+.+.+|+|+.
T Consensus       225 ~~L~~L~l~~--~--~~d~~l~~l~~~lp~L~i  253 (284)
T d2astb2         225 PTLKTLQVFG--I--VPDGTLQLLKEALPHLQI  253 (284)
T ss_dssp             TTCCEEECTT--S--SCTTCHHHHHHHSTTSEE
T ss_pred             CCCCEEeeeC--C--CCHHHHHHHHHhCccccc
Confidence            8899988732  2  233345667788888873

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=4.6e-11  Score=72.94  Aligned_cols=36  Identities=36%  Similarity=0.610  Sum_probs=33.6

Q ss_pred             CCCCChHHHHHHHhcCChHHHHHHhhhhhhhhhhcc
Q 014317           16 INRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWT   51 (427)
Q Consensus        16 is~LPd~iL~~Ils~L~~~d~~r~s~vskrW~~lw~   51 (427)
                      |+.||+||+.+||++||.+|.++++.|||+|+++-.
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~   36 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   36 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            578999999999999999999999999999999743

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.72  E-value=8.7e-10  Score=82.31  Aligned_cols=44  Identities=27%  Similarity=0.471  Sum_probs=39.0

Q ss_pred             CCcCCCCChHHHHHHHhcCChHHHHHHhhhhhhhhhhcccCcee
Q 014317           13 EDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTFTNSL   56 (427)
Q Consensus        13 ~D~is~LPd~iL~~Ils~L~~~d~~r~s~vskrW~~lw~~~~~L   56 (427)
                      .|.|+.||+||+.+||++|+.+|.++++.|||+|+++..+.+.+
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~L   46 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL   46 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHH
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHH
Confidence            58999999999999999999999999999999999876544433

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=5.4e-09  Score=78.29  Aligned_cols=43  Identities=23%  Similarity=0.447  Sum_probs=39.0

Q ss_pred             cccCCCcCCCCChHHHHHHHhcCChHHHHHHhhhhhhhhhhcc
Q 014317            9 EEISEDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWT   51 (427)
Q Consensus         9 ~~~~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vskrW~~lw~   51 (427)
                      +.-..|.|+.||+||+.+||++||.+|+++++.|||+|+.+..
T Consensus        12 p~~~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~   54 (102)
T d2ovrb1          12 PQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAE   54 (102)
T ss_dssp             CCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHT
T ss_pred             chhccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHC
Confidence            3445799999999999999999999999999999999998743

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=8.4e-08  Score=73.57  Aligned_cols=37  Identities=32%  Similarity=0.580  Sum_probs=34.9

Q ss_pred             CCcCCCCC----hHHHHHHHhcCChHHHHHHhhhhhhhhhh
Q 014317           13 EDLINRLP----DDILVNIISHLTLKEAARTSVLSNRWRNL   49 (427)
Q Consensus        13 ~D~is~LP----d~iL~~Ils~L~~~d~~r~s~vskrW~~l   49 (427)
                      .|.|+.||    |||+..|||||+.+|.++++.|||+|+++
T Consensus         8 ~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l   48 (118)
T d1p22a1           8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (118)
T ss_dssp             CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             ccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            58999999    59999999999999999999999999876

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1e-07  Score=84.37  Aligned_cols=191  Identities=20%  Similarity=0.185  Sum_probs=99.2

Q ss_pred             CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEEECCceeEEEEeee
Q 014317          160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYYGQ  239 (427)
Q Consensus       160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~~~~~  239 (427)
                      ++|++|+|.+..+..-.. ..+..+++|++|+|.++. +..+...+.+++|+.|.++++. +..+               
T Consensus        31 ~~l~~L~Ls~N~i~~l~~-~~f~~l~~L~~L~L~~N~-l~~l~~~~~l~~L~~L~Ls~N~-l~~~---------------   92 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSL-ATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQ-LQSL---------------   92 (266)
T ss_dssp             TTCCEEECTTSCCSEEEG-GGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEECCSSC-CSSC---------------
T ss_pred             cCCCEEECcCCcCCCcCH-HHhhcccccccccccccc-cccccccccccccccccccccc-cccc---------------
Confidence            589999999876643110 125678999999998884 3344433455777777777654 2211               


Q ss_pred             eeeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cc-cccCCCCceeEEEEEEEccCCCChH
Q 014317          240 AIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQ-FSLFELPKLIDLRLRVTTPNRESLL  317 (427)
Q Consensus       240 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~-~~~~~~~~L~~L~l~~~~~~~~~~~  317 (427)
                        +..+.+++.|+.+++.......   ........+.+++.|.+.. ..+. ++ ..+..+++++.|.++.+.-..  ..
T Consensus        93 --~~~~~~l~~L~~L~l~~~~~~~---~~~~~~~~l~~l~~L~l~~-n~l~~l~~~~~~~l~~l~~l~l~~N~l~~--~~  164 (266)
T d1p9ag_          93 --PLLGQTLPALTVLDVSFNRLTS---LPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTE--LP  164 (266)
T ss_dssp             --CCCTTTCTTCCEEECCSSCCCC---CCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCSC--CC
T ss_pred             --ccccccccccccccccccccce---eeccccccccccccccccc-cccceeccccccccccchhcccccccccc--cC
Confidence              1123445556666555444221   1222235666677777765 3333 32 233455666666663221111  10


Q ss_pred             HHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEece--ecCccHHHHHHHHHhccc
Q 014317          318 GLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGF--LGRQFDVELAQYLFQNAT  384 (427)
Q Consensus       318 ~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f--~g~~~e~~~~~~ll~~a~  384 (427)
                        ...+...++|++|+++.+.-...+..      -....+|+.+.+.|=  ...+....+..++-++..
T Consensus       165 --~~~~~~l~~L~~L~Ls~N~L~~lp~~------~~~~~~L~~L~L~~Np~~CdC~~~~l~~wl~~~~~  225 (266)
T d1p9ag_         165 --AGLLNGLENLDTLLLQENSLYTIPKG------FFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAE  225 (266)
T ss_dssp             --TTTTTTCTTCCEEECCSSCCCCCCTT------TTTTCCCSEEECCSCCBCCSGGGHHHHHHHHHTGG
T ss_pred             --ccccccccccceeecccCCCcccChh------HCCCCCCCEEEecCCCCCCCcchHHHHHHHHhccc
Confidence              12345677777777765432111110      112456777776652  222333455555554443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=2.4e-07  Score=81.90  Aligned_cols=181  Identities=18%  Similarity=0.160  Sum_probs=108.7

Q ss_pred             CCceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE
Q 014317          122 KRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL  201 (427)
Q Consensus       122 ~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l  201 (427)
                      ++++.|++.....     -.+|..         .+..+++|++|+|.++.+..-.   ..+.+|.|+.|+|.++......
T Consensus        31 ~~l~~L~Ls~N~i-----~~l~~~---------~f~~l~~L~~L~L~~N~l~~l~---~~~~l~~L~~L~Ls~N~l~~~~   93 (266)
T d1p9ag_          31 KDTTILHLSENLL-----YTFSLA---------TLMPYTRLTQLNLDRAELTKLQ---VDGTLPVLGTLDLSHNQLQSLP   93 (266)
T ss_dssp             TTCCEEECTTSCC-----SEEEGG---------GGTTCTTCCEEECTTSCCCEEE---CCSCCTTCCEEECCSSCCSSCC
T ss_pred             cCCCEEECcCCcC-----CCcCHH---------Hhhccccccccccccccccccc---cccccccccccccccccccccc
Confidence            4677777754321     133433         2458899999999987765311   1356899999999988643322


Q ss_pred             EEecCccccceEEEEecCCccEEEE----ECCceeEEEEeeeeee----eeccCCcccceeeeeeccccccchhhccccc
Q 014317          202 RVIGSSIQLKYLEIQSCYLMEEIEI----SAPSLLSFRYYGQAIK----INIENVPQLVDVSIRGSHTFRVTYFVGPIIS  273 (427)
Q Consensus       202 ~i~~~~~~L~~L~l~~c~~l~~~~i----~~p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~  273 (427)
                      ......++|+.|.++++.. ..+..    ..++++.|.+.+....    ..+..++.++.+.+..+..   .......+.
T Consensus        94 ~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l---~~~~~~~~~  169 (266)
T d1p9ag_          94 LLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL---TELPAGLLN  169 (266)
T ss_dssp             CCTTTCTTCCEEECCSSCC-CCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC---SCCCTTTTT
T ss_pred             ccccccccccccccccccc-ceeeccccccccccccccccccccceeccccccccccchhcccccccc---cccCccccc
Confidence            2233457888888877652 22211    1367777777655322    1234566777777766653   222333456


Q ss_pred             cCCCceEEEEeccceee-cccccCCCCceeEEEEEEEccCCC-ChHHHHHHHH
Q 014317          274 CFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLRVTTPNRE-SLLGLTCIMK  324 (427)
Q Consensus       274 ~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~ll~  324 (427)
                      .+++|+.|+|++ +.+. ++..+...++|+.|.|+.+.-.+. .+.++...++
T Consensus       170 ~l~~L~~L~Ls~-N~L~~lp~~~~~~~~L~~L~L~~Np~~CdC~~~~l~~wl~  221 (266)
T d1p9ag_         170 GLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQ  221 (266)
T ss_dssp             TCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHH
T ss_pred             cccccceeeccc-CCCcccChhHCCCCCCCEEEecCCCCCCCcchHHHHHHHH
Confidence            778888888887 4455 666666777788887765442222 4445555554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.17  E-value=1.4e-07  Score=81.33  Aligned_cols=141  Identities=17%  Similarity=0.192  Sum_probs=71.4

Q ss_pred             CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEE-EECCceeEE
Q 014317          156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIE-ISAPSLLSF  234 (427)
Q Consensus       156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~-i~~p~L~~L  234 (427)
                      +..+++|++|+|.++.+.+-.-   +..++.|+.|.+.++.... +.--..+++|+.+.++.+....... ...+.+..+
T Consensus        59 l~~l~~L~~L~ls~n~i~~~~~---l~~l~~l~~l~~~~n~~~~-i~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l  134 (227)
T d1h6ua2          59 VQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKN-VSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL  134 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCCSC-CGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEE
T ss_pred             HhcCCCCcEeecCCceeecccc---ccccccccccccccccccc-cccccccccccccccccccccccchhccccchhhh
Confidence            5678899999988877654211   6778888888888775322 1111234677777776654211100 112455555


Q ss_pred             EEeeeeee--eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceeecccccCCCCceeEEEE
Q 014317          235 RYYGQAIK--INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRL  306 (427)
Q Consensus       235 ~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l  306 (427)
                      .+.+....  ..+..++.|+.+.+..+....    .. -+..+++|+.|+++++ .+.-...+..+++|++|+|
T Consensus       135 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~----~~-~l~~l~~L~~L~Ls~n-~l~~l~~l~~l~~L~~L~L  202 (227)
T d1h6ua2         135 YLDLNQITNISPLAGLTNLQYLSIGNAQVSD----LT-PLANLSKLTTLKADDN-KISDISPLASLPNLIEVHL  202 (227)
T ss_dssp             ECCSSCCCCCGGGGGCTTCCEEECCSSCCCC----CG-GGTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEEC
T ss_pred             hchhhhhchhhhhcccccccccccccccccc----ch-hhcccccceecccCCC-ccCCChhhcCCCCCCEEEC
Confidence            44433221  123444555555554433211    00 1245556666666552 3331122344555555555

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.14  E-value=2.3e-07  Score=78.17  Aligned_cols=37  Identities=11%  Similarity=0.185  Sum_probs=19.2

Q ss_pred             CCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCC
Q 014317          157 SGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSK  196 (427)
Q Consensus       157 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~  196 (427)
                      ..+++|++|+|+++.+.+-.  . ++.+|+|+.|.+.++.
T Consensus        59 ~~l~nL~~L~Ls~N~l~~~~--~-l~~l~~L~~L~l~~n~   95 (199)
T d2omxa2          59 EYLNNLTQINFSNNQLTDIT--P-LKNLTKLVDILMNNNQ   95 (199)
T ss_dssp             GGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSC
T ss_pred             ccCCCcCcCccccccccCcc--c-ccCCcccccccccccc
Confidence            44556666666655544311  1 4455666666655543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.11  E-value=3.7e-08  Score=90.78  Aligned_cols=232  Identities=16%  Similarity=0.085  Sum_probs=122.2

Q ss_pred             CCCCCCCcEEEEeeEEeC------hh---hHHHHHhcCCccceeeeccCCCce----eE-EEecCccccceEEEEecCCc
Q 014317          156 LSGIKFLRCLHFKTVNVN------GK---DIELFIQNCPLLDRLCVDHSKTLV----RL-RVIGSSIQLKYLEIQSCYLM  221 (427)
Q Consensus       156 ~~~~~~L~~L~L~~~~~~------~~---~l~~ll~~cp~Le~L~l~~c~~~~----~l-~i~~~~~~L~~L~l~~c~~l  221 (427)
                      +...++|+.|++.++...      ..   .+...+..|+.|+.|+|.+|..-.    .+ .....+++|++|.+++|. +
T Consensus        55 l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~-l  133 (344)
T d2ca6a1          55 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-L  133 (344)
T ss_dssp             TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-C
T ss_pred             HHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheeccccc-c
Confidence            345677777777765432      11   233445567778777777664211    00 011123566666666554 1


Q ss_pred             cEEEE--ECCceeEEEEeeeeeeeeccCCcccceeeeeeccccc-cchhhccccccCCCceEEEEeccceee-------c
Q 014317          222 EEIEI--SAPSLLSFRYYGQAIKINIENVPQLVDVSIRGSHTFR-VTYFVGPIISCFPQLKTLELDSCNEVY-------M  291 (427)
Q Consensus       222 ~~~~i--~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~~~~l~~L~l~~~~~~~-------~  291 (427)
                      .....  -+..+..+     .........+.|+.+.+....... ....+...+..+++++.|.+..| .+.       +
T Consensus       134 ~~~~~~~l~~~l~~~-----~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~g~~~~l  207 (344)
T d2ca6a1         134 GPQAGAKIARALQEL-----AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLL  207 (344)
T ss_dssp             HHHHHHHHHHHHHHH-----HHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHH
T ss_pred             ccccccccccccccc-----ccccccccCcccceeecccccccccccccccchhhhhhhhcccccccc-cccccccccch
Confidence            10000  00000000     000011344566666665544221 11234445567889999999874 333       2


Q ss_pred             ccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCc--ccccCCCCccCCccEEEEecee-c
Q 014317          292 QFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGK--KRQQFPKYSHQHLKVVELHGFL-G  368 (427)
Q Consensus       292 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~--~~~~~~~~~~~~L~~v~i~~f~-g  368 (427)
                      ...+..+++|++|+|+.+.-+......+...+..+|+|++|.|+.+.-.+ .|.  ....+..+....|+++.+.+-. +
T Consensus       208 ~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~-~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         208 LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA-RGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             HTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH-HHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             hhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCc-hhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence            34567788899988854322222334456678889999999997653211 110  0011122334678888887643 2


Q ss_pred             CccHHHHHHHHHhccccccceEEEeec
Q 014317          369 RQFDVELAQYLFQNATMLEKLIIEPSR  395 (427)
Q Consensus       369 ~~~e~~~~~~ll~~a~~L~~l~i~~~~  395 (427)
                      .+.-..+++.+..+.+.|+.+.+....
T Consensus       287 ~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         287 LDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             hHHHHHHHHHHHccCCCCCEEECCCCc
Confidence            233345566666688999999886544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.11  E-value=2e-07  Score=79.34  Aligned_cols=38  Identities=16%  Similarity=0.156  Sum_probs=23.1

Q ss_pred             CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCC
Q 014317          156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSK  196 (427)
Q Consensus       156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~  196 (427)
                      +..+++|++|+|+++.+.+-.  . ++.+++|+.|++.++.
T Consensus        64 l~~l~~L~~L~L~~n~i~~l~--~-~~~l~~L~~L~l~~n~  101 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENK  101 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSC
T ss_pred             HhhCCCCCEEeCCCccccCcc--c-cccCcccccccccccc
Confidence            456677777777776654311  1 3456777777776654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.00  E-value=7.7e-07  Score=74.86  Aligned_cols=157  Identities=13%  Similarity=0.222  Sum_probs=101.4

Q ss_pred             CCCCCcEEEEeeEEeCh-hhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEE-E-ECCceeEE
Q 014317          158 GIKFLRCLHFKTVNVNG-KDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIE-I-SAPSLLSF  234 (427)
Q Consensus       158 ~~~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~-i-~~p~L~~L  234 (427)
                      .+++|++|++.++.+.+ ++    ++.+++|+.|++.++.-.+ +.--..+++|+.|.++.+.. ..+. + ..++|+.|
T Consensus        38 ~l~~l~~L~l~~~~i~~l~~----l~~l~nL~~L~Ls~N~l~~-~~~l~~l~~L~~L~l~~n~~-~~~~~l~~l~~L~~L  111 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSIDG----VEYLNNLTQINFSNNQLTD-ITPLKNLTKLVDILMNNNQI-ADITPLANLTNLTGL  111 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCTT----GGGCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCC-CCCGGGTTCTTCSEE
T ss_pred             HhcCCCEEECCCCCCCCccc----cccCCCcCcCccccccccC-cccccCCccccccccccccc-ccccccccccccccc
Confidence            45678888888776654 22    5678999999998875322 21123457889998887652 2221 1 24788888


Q ss_pred             EEeeeeee--eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceeecccccCCCCceeEEEEEEEccC
Q 014317          235 RYYGQAIK--INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLRVTTPN  312 (427)
Q Consensus       235 ~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  312 (427)
                      .+.++...  ..+..++.|+.++++.+....    + ..+..+++++.|.+.+ ..+.....+..+++|++|+++.+.-.
T Consensus       112 ~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~----~-~~l~~~~~L~~L~l~~-n~l~~l~~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         112 TLFNNQITDIDPLKNLTNLNRLELSSNTISD----I-SALSGLTSLQQLNFSS-NQVTDLKPLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             ECCSSCCCCCGGGTTCTTCSEEECCSSCCCC----C-GGGTTCTTCSEEECCS-SCCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred             cccccccccccccchhhhhHHhhhhhhhhcc----c-cccccccccccccccc-ccccCCccccCCCCCCEEECCCCCCC
Confidence            88766432  235678888888887765322    1 2246788999999987 44442234677889999988543211


Q ss_pred             CCChHHHHHHHHhCCCccEE
Q 014317          313 RESLLGLTCIMKACPFLQKL  332 (427)
Q Consensus       313 ~~~~~~l~~ll~~~p~L~~L  332 (427)
                        +.    ..+..+++|++|
T Consensus       186 --~i----~~l~~L~~L~~L  199 (199)
T d2omxa2         186 --DI----SVLAKLTNLESL  199 (199)
T ss_dssp             --CC----GGGGGCTTCSEE
T ss_pred             --CC----ccccCCCCCCcC
Confidence              22    235788898876

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.97  E-value=1.3e-06  Score=74.13  Aligned_cols=161  Identities=18%  Similarity=0.225  Sum_probs=94.8

Q ss_pred             CCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEE-E-ECCceeEEEE
Q 014317          159 IKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIE-I-SAPSLLSFRY  236 (427)
Q Consensus       159 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~-i-~~p~L~~L~~  236 (427)
                      +.+|+.|++.++.+.+-.  . +..+|+|++|++.++...+ +.-...+++|+.|.++++. +..+. + ..|+|+.|.+
T Consensus        45 L~~L~~L~l~~~~i~~l~--~-l~~l~~L~~L~L~~n~i~~-l~~~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~l  119 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ--G-IQYLPNVTKLFLNGNKLTD-IKPLANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSL  119 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT--T-GGGCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEEC
T ss_pred             hcCccEEECcCCCCCCch--h-HhhCCCCCEEeCCCccccC-ccccccCcccccccccccc-cccccccccccccccccc
Confidence            457777777776654311  1 5668888888888774322 1111345778888887765 43332 1 1477888887


Q ss_pred             eeeeee--eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceeecccccCCCCceeEEEEEEEccCCC
Q 014317          237 YGQAIK--INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLRVTTPNRE  314 (427)
Q Consensus       237 ~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  314 (427)
                      .++...  -.+..++.++.+.+..+....     ......+++|+.+.+.+ ..+.....+..+++|++|+++.+.-.  
T Consensus       120 ~~~~~~~~~~l~~l~~l~~l~~~~n~l~~-----~~~~~~l~~L~~l~l~~-n~l~~i~~l~~l~~L~~L~Ls~N~i~--  191 (210)
T d1h6ta2         120 EHNGISDINGLVHLPQLESLYLGNNKITD-----ITVLSRLTKLDTLSLED-NQISDIVPLAGLTKLQNLYLSKNHIS--  191 (210)
T ss_dssp             TTSCCCCCGGGGGCTTCCEEECCSSCCCC-----CGGGGGCTTCSEEECCS-SCCCCCGGGTTCTTCCEEECCSSCCC--
T ss_pred             ccccccccccccccccccccccccccccc-----ccccccccccccccccc-ccccccccccCCCCCCEEECCCCCCC--
Confidence            765321  124556667777666554221     11235678888888887 34442223567788888887433211  


Q ss_pred             ChHHHHHHHHhCCCccEEEEEe
Q 014317          315 SLLGLTCIMKACPFLQKLILQL  336 (427)
Q Consensus       315 ~~~~l~~ll~~~p~L~~L~i~~  336 (427)
                      ++   . -+.++++|+.|+|+.
T Consensus       192 ~l---~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         192 DL---R-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             BC---G-GGTTCTTCSEEEEEE
T ss_pred             CC---h-hhcCCCCCCEEEccC
Confidence            22   1 256788888888863

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=1.8e-06  Score=76.84  Aligned_cols=101  Identities=14%  Similarity=0.073  Sum_probs=47.7

Q ss_pred             CceeEEEEeeeeee----eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-c-ccccCCCCcee
Q 014317          229 PSLLSFRYYGQAIK----INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-M-QFSLFELPKLI  302 (427)
Q Consensus       229 p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~-~~~~~~~~~L~  302 (427)
                      ++|++|++.+....    ......+.|+.+.+.....   .......+..+++++.|++.+ ..+. + +..+..+++|+
T Consensus       105 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l---~~i~~~~f~~~~~L~~L~l~~-N~l~~l~~~~f~~l~~L~  180 (284)
T d1ozna_         105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL---QALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLD  180 (284)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCC
T ss_pred             ccCCEEecCCcccccccccccchhcccchhhhccccc---cccChhHhccccchhhccccc-Ccccccchhhhccccccc
Confidence            45555555443211    1223345556665555442   111223345566677777766 3433 2 33445556666


Q ss_pred             EEEEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317          303 DLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLN  337 (427)
Q Consensus       303 ~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  337 (427)
                      .|.+..+.-....    ...+..+++|+.|++..+
T Consensus       181 ~l~l~~N~l~~i~----~~~f~~l~~L~~L~l~~N  211 (284)
T d1ozna_         181 RLLLHQNRVAHVH----PHAFRDLGRLMTLYLFAN  211 (284)
T ss_dssp             EEECCSSCCCEEC----TTTTTTCTTCCEEECCSS
T ss_pred             hhhhhhccccccC----hhHhhhhhhccccccccc
Confidence            6665322111100    123456667777766543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=7e-06  Score=72.81  Aligned_cols=174  Identities=17%  Similarity=0.171  Sum_probs=103.6

Q ss_pred             CCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEe--cCccccceEEEEecCCccEEEE----EC
Q 014317          155 GLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVI--GSSIQLKYLEIQSCYLMEEIEI----SA  228 (427)
Q Consensus       155 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~--~~~~~L~~L~l~~c~~l~~~~i----~~  228 (427)
                      .+.++++|+.|++++..+..-.. .....++.++.+.+........+.-.  ..+++|+.|.++.+. +..+..    ..
T Consensus        51 ~f~~l~~L~~L~ls~n~l~~i~~-~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~  128 (284)
T d1ozna_          51 SFRACRNLTILWLHSNVLARIDA-AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGL  128 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTC
T ss_pred             Hhhcccccccccccccccccccc-ccccccccccccccccccccccccchhhcccccCCEEecCCcc-cccccccccchh
Confidence            35677788888887665432110 12445677777766555444332111  134678888887665 222211    13


Q ss_pred             CceeEEEEeeeeee----eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeE
Q 014317          229 PSLLSFRYYGQAIK----INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLID  303 (427)
Q Consensus       229 p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~  303 (427)
                      ++|+.+.+.+....    ..+...+.|+.+.+..+..   .......+..+++|+.+.+..+.-.. .+..+..+++|++
T Consensus       129 ~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l---~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~  205 (284)
T d1ozna_         129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI---SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT  205 (284)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC---CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             cccchhhhccccccccChhHhccccchhhcccccCcc---cccchhhhccccccchhhhhhccccccChhHhhhhhhccc
Confidence            67888888766432    2345677888888877663   22233445678888888888733223 4566777788888


Q ss_pred             EEEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317          304 LRLRVTTPNRESLLGLTCIMKACPFLQKLILQLN  337 (427)
Q Consensus       304 L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  337 (427)
                      |+++.+.-..  .  ....+..+++|+.|.++++
T Consensus       206 L~l~~N~i~~--~--~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         206 LYLFANNLSA--L--PTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             EECCSSCCSC--C--CHHHHTTCTTCCEEECCSS
T ss_pred             cccccccccc--c--cccccccccccCEEEecCC
Confidence            8875432222  1  1245678888888888654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.69  E-value=7.6e-06  Score=73.32  Aligned_cols=169  Identities=16%  Similarity=0.155  Sum_probs=79.1

Q ss_pred             CCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEE----ECCc
Q 014317          155 GLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEI----SAPS  230 (427)
Q Consensus       155 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i----~~p~  230 (427)
                      .+.++++|++|++.++.+..-. ...+..++.|+.|++.++.-.. +.. ...+.++.|...... +..+.-    ..+.
T Consensus        50 ~f~~l~~L~~L~l~~n~~~~i~-~~~f~~l~~L~~L~l~~n~l~~-l~~-~~~~~l~~L~~~~n~-l~~l~~~~~~~~~~  125 (305)
T d1xkua_          50 DFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQLKE-LPE-KMPKTLQELRVHENE-ITKVRKSVFNGLNQ  125 (305)
T ss_dssp             TTTTCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCCSB-CCS-SCCTTCCEEECCSSC-CCBBCHHHHTTCTT
T ss_pred             Hhhccccccccccccccccccc-hhhhhCCCccCEecccCCccCc-Ccc-chhhhhhhhhccccc-hhhhhhhhhhcccc
Confidence            3567788888888877654311 1125568888888887764221 110 112455555554432 221110    1133


Q ss_pred             eeEEEEeeeee------eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeE
Q 014317          231 LLSFRYYGQAI------KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLID  303 (427)
Q Consensus       231 L~~L~~~~~~~------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~  303 (427)
                      +..+.+.....      ...+..++.|+.+.+..+....    +.  ...+++++.|++.++.... .+..+..+++++.
T Consensus       126 ~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~----l~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~  199 (305)
T d1xkua_         126 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT----IP--QGLPPSLTELHLDGNKITKVDAASLKGLNNLAK  199 (305)
T ss_dssp             CCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS----CC--SSCCTTCSEEECTTSCCCEECTGGGTTCTTCCE
T ss_pred             ccccccccccccccCCCccccccccccCccccccCCccc----cC--cccCCccCEEECCCCcCCCCChhHhhccccccc
Confidence            33333322211      1123344555555555443211    00  1245677777776532222 3344455566666


Q ss_pred             EEEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317          304 LRLRVTTPNRESLLGLTCIMKACPFLQKLILQLN  337 (427)
Q Consensus       304 L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  337 (427)
                      |.++.+.-.  ...  ...+.++|+|++|+++.+
T Consensus       200 L~~s~n~l~--~~~--~~~~~~l~~L~~L~L~~N  229 (305)
T d1xkua_         200 LGLSFNSIS--AVD--NGSLANTPHLRELHLNNN  229 (305)
T ss_dssp             EECCSSCCC--EEC--TTTGGGSTTCCEEECCSS
T ss_pred             ccccccccc--ccc--cccccccccceeeecccc
Confidence            665322111  110  123456677777777654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=7.3e-05  Score=64.15  Aligned_cols=193  Identities=15%  Similarity=0.142  Sum_probs=104.6

Q ss_pred             CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEe--cCccccceEEEEecCCccEEE----EECCceeE
Q 014317          160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVI--GSSIQLKYLEIQSCYLMEEIE----ISAPSLLS  233 (427)
Q Consensus       160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~--~~~~~L~~L~l~~c~~l~~~~----i~~p~L~~  233 (427)
                      +++++|+|.+..+..-. ...+.++|+|+.|++.++.....+...  ..++.+++|.+..+..+..+.    -..|+|+.
T Consensus        29 ~~l~~L~Ls~n~i~~l~-~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~  107 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQ-KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  107 (242)
T ss_dssp             SCCSEEEEESCCCCEEC-TTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCE
T ss_pred             CCCCEEECcCCcCCccC-hhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccc
Confidence            58999999987654210 012577999999999988765543221  135788899888877665543    23589999


Q ss_pred             EEEeeeeeee--eccCCcccceeeeeeccccccchh-hccccccCCCceEEEEeccceee-cccccCCCCceeEEEEEEE
Q 014317          234 FRYYGQAIKI--NIENVPQLVDVSIRGSHTFRVTYF-VGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLRVT  309 (427)
Q Consensus       234 L~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~  309 (427)
                      +.+.+.....  ....+..++.+.........+... ...+......++.|.+.. ..+. ++.......+++++..  .
T Consensus       108 l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~-n~l~~i~~~~~~~~~l~~~~~--l  184 (242)
T d1xwdc1         108 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNCAFNGTQLDELNL--S  184 (242)
T ss_dssp             EEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTTTTTCCEEEEEC--T
T ss_pred             cccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccc-ccccccccccccchhhhcccc--c
Confidence            9998764321  122344455555433322111111 112222334677788775 4444 4443334445554432  1


Q ss_pred             ccCCCChHHH-HHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEece
Q 014317          310 TPNRESLLGL-TCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGF  366 (427)
Q Consensus       310 ~~~~~~~~~l-~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f  366 (427)
                       .+. ....+ ...+.++++|+.|+|..+.-.       . +|...+.+|..+...+.
T Consensus       185 -~~n-~l~~l~~~~f~~l~~L~~L~Ls~N~l~-------~-l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         185 -DNN-NLEELPNDVFHGASGPVILDISRTRIH-------S-LPSYGLENLKKLRARST  232 (242)
T ss_dssp             -TCT-TCCCCCTTTTTTSCCCSEEECTTSCCC-------C-CCSSSCTTCCEEESSSE
T ss_pred             -ccc-ccccccHHHhcCCCCCCEEECCCCcCC-------c-cCHHHHcCCcccccCcC
Confidence             111 11111 123578899999999654321       1 33334555555554443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=1.2e-05  Score=64.95  Aligned_cols=39  Identities=10%  Similarity=0.018  Sum_probs=23.8

Q ss_pred             CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCC
Q 014317          156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSK  196 (427)
Q Consensus       156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~  196 (427)
                      +.+...|++|+|+++.++.=  +.+...++.|+.|+++++.
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i--~~~~~~l~~L~~L~Ls~N~   52 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNE   52 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSSC
T ss_pred             ccCcCcCcEEECCCCCCCcc--CccccccccCCEEECCCCC
Confidence            34566777777777665431  2234566777777777663

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.67  E-value=1.7e-05  Score=67.65  Aligned_cols=142  Identities=11%  Similarity=0.113  Sum_probs=95.6

Q ss_pred             CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEE-EECCceeEE
Q 014317          156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIE-ISAPSLLSF  234 (427)
Q Consensus       156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~-i~~p~L~~L  234 (427)
                      +..+++|+.+.+.++.+.+-  .. +..++.|+.|.+.+|.......+ ...+.++.+.++.+....... ...++|++|
T Consensus        81 l~~l~~l~~l~~~~n~~~~i--~~-l~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L  156 (227)
T d1h6ua2          81 LKNLTKITELELSGNPLKNV--SA-IAGLQSIKTLDLTSTQITDVTPL-AGLSNLQVLYLDLNQITNISPLAGLTNLQYL  156 (227)
T ss_dssp             GTTCCSCCEEECCSCCCSCC--GG-GTTCTTCCEEECTTSCCCCCGGG-TTCTTCCEEECCSSCCCCCGGGGGCTTCCEE
T ss_pred             cccccccccccccccccccc--cc-ccccccccccccccccccccchh-ccccchhhhhchhhhhchhhhhccccccccc
Confidence            56889999999998876541  11 56799999999988865432111 123677777776654221111 235889999


Q ss_pred             EEeeeeee--eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceeecccccCCCCceeEEEEE
Q 014317          235 RYYGQAIK--INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLR  307 (427)
Q Consensus       235 ~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  307 (427)
                      .+.++...  ..+.+++.|+++++..+....    +. .+..+++|+.|.+++| .+.-...+..+++|+.|+++
T Consensus       157 ~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~----l~-~l~~l~~L~~L~Ls~N-~lt~i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         157 SIGNAQVSDLTPLANLSKLTTLKADDNKISD----IS-PLASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLT  225 (227)
T ss_dssp             ECCSSCCCCCGGGTTCTTCCEEECCSSCCCC----CG-GGGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEE
T ss_pred             cccccccccchhhcccccceecccCCCccCC----Ch-hhcCCCCCCEEECcCC-cCCCCcccccCCCCCEEEee
Confidence            98876432  346788999999998876332    22 2478899999999984 45422235677788888774

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=2.6e-06  Score=68.95  Aligned_cols=56  Identities=13%  Similarity=0.281  Sum_probs=27.4

Q ss_pred             CCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cc----cccCCCCceeEEE
Q 014317          247 NVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQ----FSLFELPKLIDLR  305 (427)
Q Consensus       247 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~----~~~~~~~~L~~L~  305 (427)
                      .++.|+.+.+..+....+.. + ..+..+++|+.|++.++ .+. .+    ..+..+++|+.|+
T Consensus        85 ~l~~L~~L~L~~N~i~~~~~-l-~~l~~l~~L~~L~l~~N-~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          85 ALPDLTELILTNNSLVELGD-L-DPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             HCTTCCEEECCSCCCCCGGG-G-GGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccccccceecccccccccc-c-cccccccccchhhcCCC-ccccccchHHHHHHHCCCcCeeC
Confidence            34555555555544222111 1 22356677777777763 222 22    1235566777665

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.53  E-value=6.9e-06  Score=75.87  Aligned_cols=187  Identities=14%  Similarity=0.131  Sum_probs=117.0

Q ss_pred             CCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEE-E-ECCcee
Q 014317          155 GLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIE-I-SAPSLL  232 (427)
Q Consensus       155 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~-i-~~p~L~  232 (427)
                      ....+++++.+.+.++.+.+-.   -...++.|++|.+.++...+ +..-..+++|+.|.++++. +..+. + ..|+|+
T Consensus       192 ~~~~l~~~~~l~l~~n~i~~~~---~~~~~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~L~  266 (384)
T d2omza2         192 VLAKLTNLESLIATNNQISDIT---PLGILTNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQ-ISNLAPLSGLTKLT  266 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCG---GGGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSC-CCCCGGGTTCTTCS
T ss_pred             ccccccccceeeccCCccCCCC---cccccCCCCEEECCCCCCCC-cchhhcccccchhccccCc-cCCCCcccccccCC
Confidence            4556889999999887765421   14568999999998885332 2112245789999988775 33321 1 248999


Q ss_pred             EEEEeeeeeee--eccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceeecccccCCCCceeEEEEEEEc
Q 014317          233 SFRYYGQAIKI--NIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLRVTT  310 (427)
Q Consensus       233 ~L~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  310 (427)
                      +|++.+.....  .+..++.++.+.+..+...+    + .-+..+++++.|++++ ..+.-...+..+++|++|.++.+.
T Consensus       267 ~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~----~-~~~~~~~~l~~L~ls~-n~l~~l~~l~~l~~L~~L~L~~n~  340 (384)
T d2omza2         267 ELKLGANQISNISPLAGLTALTNLELNENQLED----I-SPISNLKNLTYLTLYF-NNISDISPVSSLTKLQRLFFANNK  340 (384)
T ss_dssp             EEECCSSCCCCCGGGTTCTTCSEEECCSSCCSC----C-GGGGGCTTCSEEECCS-SCCSCCGGGGGCTTCCEEECCSSC
T ss_pred             EeeccCcccCCCCcccccccccccccccccccc----c-cccchhcccCeEECCC-CCCCCCcccccCCCCCEEECCCCC
Confidence            99987664321  24556667777666554222    1 1246888999999987 454422236778899999985432


Q ss_pred             cCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEec
Q 014317          311 PNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHG  365 (427)
Q Consensus       311 ~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~  365 (427)
                      -.  +.   . -+..+|+|++|+++.+.-...       .|-....+|+++.+.+
T Consensus       341 l~--~l---~-~l~~l~~L~~L~l~~N~l~~l-------~~l~~l~~L~~L~L~~  382 (384)
T d2omza2         341 VS--DV---S-SLANLTNINWLSAGHNQISDL-------TPLANLTRITQLGLND  382 (384)
T ss_dssp             CC--CC---G-GGGGCTTCCEEECCSSCCCBC-------GGGTTCTTCSEEECCC
T ss_pred             CC--CC---h-hHcCCCCCCEEECCCCcCCCC-------hhhccCCCCCEeeCCC
Confidence            11  22   1 257899999999976532211       1112346888887653

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.46  E-value=1.6e-05  Score=73.20  Aligned_cols=185  Identities=14%  Similarity=0.172  Sum_probs=116.2

Q ss_pred             HhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEE--EECCceeEEEEeeeeee--eeccCCcccceeee
Q 014317          181 IQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIE--ISAPSLLSFRYYGQAIK--INIENVPQLVDVSI  256 (427)
Q Consensus       181 l~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~--i~~p~L~~L~~~~~~~~--~~~~~~~~L~~l~l  256 (427)
                      ...++.++.|.+.++...+... ....++|+.|.++++. +..+.  ...++|+.+++.++...  ..+..+++|+.+.+
T Consensus       193 ~~~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l  270 (384)
T d2omza2         193 LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL  270 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred             cccccccceeeccCCccCCCCc-ccccCCCCEEECCCCC-CCCcchhhcccccchhccccCccCCCCcccccccCCEeec
Confidence            5678999999998775332111 1234789999988775 33332  12488999998876432  13567888999998


Q ss_pred             eeccccccchhhccccccCCCceEEEEeccceeecccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEe
Q 014317          257 RGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQL  336 (427)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~  336 (427)
                      .......+    . -+..++.++.+.+.. ..+.....+..++++++|+++.+.-.  +..    -+..+|+|++|+++.
T Consensus       271 ~~~~l~~~----~-~~~~~~~l~~l~~~~-n~l~~~~~~~~~~~l~~L~ls~n~l~--~l~----~l~~l~~L~~L~L~~  338 (384)
T d2omza2         271 GANQISNI----S-PLAGLTALTNLELNE-NQLEDISPISNLKNLTYLTLYFNNIS--DIS----PVSSLTKLQRLFFAN  338 (384)
T ss_dssp             CSSCCCCC----G-GGTTCTTCSEEECCS-SCCSCCGGGGGCTTCSEEECCSSCCS--CCG----GGGGCTTCCEEECCS
T ss_pred             cCcccCCC----C-ccccccccccccccc-cccccccccchhcccCeEECCCCCCC--CCc----ccccCCCCCEEECCC
Confidence            77653221    1 135778888888886 44443334577788999988543221  221    257899999999986


Q ss_pred             ccCCCCCCcccccCCCCccCCccEEEEeceecCccHHHHHHHHHhccccccceEEE
Q 014317          337 NDHGRRLGKKRQQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIE  392 (427)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i~  392 (427)
                      +.-..    ... +.  ...+|+.+.+.+-+=..  +.   - +.+.+.|+.+.|.
T Consensus       339 n~l~~----l~~-l~--~l~~L~~L~l~~N~l~~--l~---~-l~~l~~L~~L~L~  381 (384)
T d2omza2         339 NKVSD----VSS-LA--NLTNINWLSAGHNQISD--LT---P-LANLTRITQLGLN  381 (384)
T ss_dssp             SCCCC----CGG-GG--GCTTCCEEECCSSCCCB--CG---G-GTTCTTCSEEECC
T ss_pred             CCCCC----Chh-Hc--CCCCCCEEECCCCcCCC--Ch---h-hccCCCCCEeeCC
Confidence            53211    111 22  24688888887643221  11   1 5688999998875

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.37  E-value=5.8e-05  Score=67.61  Aligned_cols=64  Identities=16%  Similarity=0.075  Sum_probs=34.8

Q ss_pred             cccccCCCceEEEEeccceeecccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317          270 PIISCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLN  337 (427)
Q Consensus       270 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  337 (427)
                      .....+++++.|.+..+.-...+..+..+++|+.|+++.+.-..    .++.-+.++++|+.|+++.+
T Consensus       215 ~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g----~iP~~l~~L~~L~~L~Ls~N  278 (313)
T d1ogqa_         215 VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG----TLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             GGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEE----CCCGGGGGCTTCCEEECCSS
T ss_pred             ccccccccccccccccccccccccccccccccccccCccCeecc----cCChHHhCCCCCCEEECcCC
Confidence            33456677777777763222233345556777777764321110    12233566777887777654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.28  E-value=3.7e-06  Score=76.88  Aligned_cols=167  Identities=15%  Similarity=0.113  Sum_probs=83.5

Q ss_pred             CCCCCCcEEEEeeEEeChh---hHHHHHhcCCccceeeeccCCCcee--EEEe------------cCccccceEEEEecC
Q 014317          157 SGIKFLRCLHFKTVNVNGK---DIELFIQNCPLLDRLCVDHSKTLVR--LRVI------------GSSIQLKYLEIQSCY  219 (427)
Q Consensus       157 ~~~~~L~~L~L~~~~~~~~---~l~~ll~~cp~Le~L~l~~c~~~~~--l~i~------------~~~~~L~~L~l~~c~  219 (427)
                      ..+++|+.|+|.++.+++.   .+...+..++.|+.|.+.+|.....  ..+.            ...+.|+.|.++.+.
T Consensus        90 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~  169 (344)
T d2ca6a1          90 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  169 (344)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccc
Confidence            4578899999999888765   4555677899999999988752110  0000            012344444443322


Q ss_pred             CccEEEEECCceeEEEEeeeeeeeeccCCcccceeeeeeccccc--cchhhccccccCCCceEEEEeccceee------c
Q 014317          220 LMEEIEISAPSLLSFRYYGQAIKINIENVPQLVDVSIRGSHTFR--VTYFVGPIISCFPQLKTLELDSCNEVY------M  291 (427)
Q Consensus       220 ~l~~~~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~~~~~~~~~~~~l~~L~l~~~~~~~------~  291 (427)
                       +..-     ...       .....+...+.|+++.+..+....  ....+...+..+++++.|++++ +.+.      +
T Consensus       170 -i~~~-----~~~-------~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~-N~i~~~g~~~L  235 (344)
T d2ca6a1         170 -LENG-----SMK-------EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD-NTFTHLGSSAL  235 (344)
T ss_dssp             -CTGG-----GHH-------HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCS-SCCHHHHHHHH
T ss_pred             -cccc-----ccc-------cccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccc-ccccccccccc
Confidence             1000     000       000012234556666665544221  1122334455667777777765 2332      2


Q ss_pred             ccccCCCCceeEEEEEEEccCCCChHHHHHHHHh--CCCccEEEEEec
Q 014317          292 QFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKA--CPFLQKLILQLN  337 (427)
Q Consensus       292 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~--~p~L~~L~i~~~  337 (427)
                      ...+..+++|++|+|+.+.-+......+...+..  .+.|++|+|+++
T Consensus       236 ~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N  283 (344)
T d2ca6a1         236 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN  283 (344)
T ss_dssp             HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS
T ss_pred             cccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCC
Confidence            2344566677777663322222122333334443  345777777654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.07  E-value=3.6e-05  Score=68.73  Aligned_cols=37  Identities=14%  Similarity=0.068  Sum_probs=20.6

Q ss_pred             CCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccC
Q 014317          155 GLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHS  195 (427)
Q Consensus       155 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c  195 (427)
                      .+..++.|++|++.++.+..-.    -..++.|+.|.+.+.
T Consensus        74 ~f~~l~~L~~L~l~~n~l~~l~----~~~~~~l~~L~~~~n  110 (305)
T d1xkua_          74 AFAPLVKLERLYLSKNQLKELP----EKMPKTLQELRVHEN  110 (305)
T ss_dssp             TTTTCTTCCEEECCSSCCSBCC----SSCCTTCCEEECCSS
T ss_pred             hhhCCCccCEecccCCccCcCc----cchhhhhhhhhcccc
Confidence            4567788888888776543210    112455566655443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.02  E-value=5.1e-05  Score=68.01  Aligned_cols=87  Identities=21%  Similarity=0.296  Sum_probs=47.6

Q ss_pred             CCCCCCCCCCCcEEEEeeE-EeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCCccEEE--E-
Q 014317          152 SGRGLSGIKFLRCLHFKTV-NVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYLMEEIE--I-  226 (427)
Q Consensus       152 lp~~~~~~~~L~~L~L~~~-~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~~~--i-  226 (427)
                      +|+.++.+++|++|+|.++ .+.+. +..-++.+++|+.|+|.++...+.. ........|+.+.++.+.....+.  + 
T Consensus        68 lp~~l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~  146 (313)
T d1ogqa_          68 IPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS  146 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred             CChHHhcCccccccccccccccccc-cccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhc
Confidence            4445678899999999864 23211 1122677889999999887543321 111133566766665543111110  1 


Q ss_pred             ECCceeEEEEeee
Q 014317          227 SAPSLLSFRYYGQ  239 (427)
Q Consensus       227 ~~p~L~~L~~~~~  239 (427)
                      ..++|+.+++.+.
T Consensus       147 ~l~~L~~l~l~~n  159 (313)
T d1ogqa_         147 SLPNLVGITFDGN  159 (313)
T ss_dssp             GCTTCCEEECCSS
T ss_pred             cCcccceeecccc
Confidence            1356666665544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=96.69  E-value=7.4e-06  Score=68.54  Aligned_cols=105  Identities=16%  Similarity=0.138  Sum_probs=56.7

Q ss_pred             CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCCccEEEEECCceeEE
Q 014317          156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSF  234 (427)
Q Consensus       156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L  234 (427)
                      +..+++|++|+|+++.+.+=  .. +.++++|+.|++.++.- ..+ .+....++|+.|.++++. +..+.         
T Consensus        44 l~~L~~L~~L~Ls~n~I~~i--~~-l~~l~~L~~L~Ls~N~i-~~i~~~~~~~~~L~~L~l~~N~-i~~l~---------  109 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEKI--SS-LSGMENLRILSLGRNLI-KKIENLDAVADTLEELWISYNQ-IASLS---------  109 (198)
T ss_dssp             HHHTTTCCEEECSEEEESCC--CC-HHHHTTCCEEECCEEEE-CSCSSHHHHHHHCCEEECSEEE-CCCHH---------
T ss_pred             HhcccccceeECcccCCCCc--cc-ccCCccccChhhccccc-cccccccccccccccccccccc-ccccc---------
Confidence            45688999999999887641  11 56788999999987731 111 011112355666555443 22110         


Q ss_pred             EEeeeeeeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEec
Q 014317          235 RYYGQAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDS  285 (427)
Q Consensus       235 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~  285 (427)
                               .+..++.|+.++++.+....+.  ....+..+++|+.|.+++
T Consensus       110 ---------~~~~l~~L~~L~L~~N~i~~~~--~~~~l~~l~~L~~L~L~~  149 (198)
T d1m9la_         110 ---------GIEKLVNLRVLYMSNNKITNWG--EIDKLAALDKLEDLLLAG  149 (198)
T ss_dssp             ---------HHHHHHHSSEEEESEEECCCHH--HHHHHTTTTTCSEEEECS
T ss_pred             ---------cccccccccccccccchhcccc--ccccccCCCccceeecCC
Confidence                     1233455555555554422111  012245677777777776

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.65  E-value=0.00019  Score=59.16  Aligned_cols=37  Identities=11%  Similarity=0.089  Sum_probs=24.9

Q ss_pred             CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCC
Q 014317          160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSK  196 (427)
Q Consensus       160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~  196 (427)
                      +++++|+|++..+....-...+...+.|+.|.+.++.
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~   65 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ   65 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccc
Confidence            6899999998877532111225667888888887654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.0021  Score=54.58  Aligned_cols=191  Identities=15%  Similarity=0.077  Sum_probs=94.0

Q ss_pred             CCceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE
Q 014317          122 KRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL  201 (427)
Q Consensus       122 ~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l  201 (427)
                      ++++.|++.....     -.+|..         .+.++++|++|+|.++.+...--...+..++.+++|.+..+..+...
T Consensus        29 ~~l~~L~Ls~n~i-----~~l~~~---------~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~   94 (242)
T d1xwdc1          29 RNAIELRFVLTKL-----RVIQKG---------AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI   94 (242)
T ss_dssp             SCCSEEEEESCCC-----CEECTT---------TTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEE
T ss_pred             CCCCEEECcCCcC-----CccChh---------Hhhccchhhhhhhccccccceeecccccccccccccccccccccccc
Confidence            4778888875422     123322         35688999999998875322100111456888999988777655443


Q ss_pred             EEe--cCccccceEEEEecCCccEEEEE--CCceeEEEE---eeeeee-e---eccCC-cccceeeeeeccccccchhhc
Q 014317          202 RVI--GSSIQLKYLEIQSCYLMEEIEIS--APSLLSFRY---YGQAIK-I---NIENV-PQLVDVSIRGSHTFRVTYFVG  269 (427)
Q Consensus       202 ~i~--~~~~~L~~L~l~~c~~l~~~~i~--~p~L~~L~~---~~~~~~-~---~~~~~-~~L~~l~l~~~~~~~~~~~~~  269 (427)
                      ...  ..+++|+.|.+.++. +......  .++++.+..   .+.... +   .+.++ ..++.+.+.......    +.
T Consensus        95 ~~~~~~~l~~L~~l~l~~~~-l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~----i~  169 (242)
T d1xwdc1          95 NPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE----IH  169 (242)
T ss_dssp             CTTSEECCTTCCEEEEESCC-CCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE----EC
T ss_pred             ccccccccccccccccchhh-hcccccccccccccccccccccccccccccccccccccccceeeecccccccc----cc
Confidence            221  245789999998765 3322111  233333332   221111 1   12222 245555554433211    11


Q ss_pred             cccccCCCceEEEEeccceee-ccc-ccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEE
Q 014317          270 PIISCFPQLKTLELDSCNEVY-MQF-SLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQ  335 (427)
Q Consensus       270 ~~~~~~~~l~~L~l~~~~~~~-~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~  335 (427)
                      ......++++.+....+..+. ++. .+..+++|+.|+|+.+.-.  .+.  ...++++++|+.|++.
T Consensus       170 ~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~--~l~--~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         170 NCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH--SLP--SYGLENLKKLRARSTY  233 (242)
T ss_dssp             TTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC--CCC--SSSCTTCCEEESSSEE
T ss_pred             cccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC--ccC--HHHHcCCcccccCcCC
Confidence            111234455555443334444 443 3466778888877332111  111  0124555666655554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=96.06  E-value=0.00039  Score=57.61  Aligned_cols=60  Identities=18%  Similarity=0.053  Sum_probs=31.5

Q ss_pred             cCCCceEEEEeccceeecccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317          274 CFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLN  337 (427)
Q Consensus       274 ~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  337 (427)
                      .+++|+.|.+++ +.+.....+..+++|+.|+++.+.-..  +. -...+..+|+|+.|+++++
T Consensus        91 ~~~~L~~L~l~~-N~i~~l~~~~~l~~L~~L~L~~N~i~~--~~-~~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_          91 VADTLEELWISY-NQIASLSGIEKLVNLRVLYMSNNKITN--WG-EIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             HHHHCCEEECSE-EECCCHHHHHHHHHSSEEEESEEECCC--HH-HHHHHTTTTTCSEEEECSS
T ss_pred             cccccccccccc-ccccccccccccccccccccccchhcc--cc-ccccccCCCccceeecCCC
Confidence            345566676665 344322234455667777765443221  11 1234566777777777643

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.0022  Score=50.53  Aligned_cols=76  Identities=17%  Similarity=0.174  Sum_probs=45.0

Q ss_pred             ccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeEEEEEEEccCCC-ChHHHHHH
Q 014317          245 IENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLRVTTPNRE-SLLGLTCI  322 (427)
Q Consensus       245 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l  322 (427)
                      +.+++.|+.+++..+..   ...-...+..+++|+.|+|++ +.+. ++.......+|++|.|+.+.-.+. +..++...
T Consensus        52 f~~l~~L~~L~Ls~N~l---~~i~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~~~l~~L~L~~Np~~C~C~~~~l~~~  127 (156)
T d2ifga3          52 LRGLGELRNLTIVKSGL---RFVAPDAFHFTPRLSRLNLSF-NALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRW  127 (156)
T ss_dssp             SCSCCCCSEEECCSSCC---CEECTTGGGSCSCCCEEECCS-SCCSCCCSTTTCSCCCCEEECCSSCCCCCGGGHHHHHH
T ss_pred             hccccccCcceeecccc---CCcccccccccccccceeccC-CCCcccChhhhccccccccccCCCcccCCchHHHHHHH
Confidence            45566777777766652   222234456788888888887 5665 454444444688888765443322 44555555


Q ss_pred             HH
Q 014317          323 MK  324 (427)
Q Consensus       323 l~  324 (427)
                      ++
T Consensus       128 ~~  129 (156)
T d2ifga3         128 EE  129 (156)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.86  E-value=0.0018  Score=48.93  Aligned_cols=33  Identities=24%  Similarity=0.319  Sum_probs=15.8

Q ss_pred             ccCCCceEEEEeccceeecccccCCCCceeEEEE
Q 014317          273 SCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRL  306 (427)
Q Consensus       273 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l  306 (427)
                      ..+++|+.|.+++ +.+.....+..+++|++|.+
T Consensus        40 ~~l~~L~~L~l~~-N~i~~l~~~~~l~~L~~L~l   72 (124)
T d1dcea3          40 AALRCLEVLQASD-NALENVDGVANLPRLQELLL   72 (124)
T ss_dssp             GGCTTCCEEECCS-SCCCCCGGGTTCSSCCEEEC
T ss_pred             hhhhccccccccc-ccccccCccccccccCeEEC
Confidence            3455555555554 33332223445555555555

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.73  E-value=0.0031  Score=51.48  Aligned_cols=77  Identities=19%  Similarity=0.267  Sum_probs=46.7

Q ss_pred             CceeEEEEeeeee----eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-c-ccccCCCCcee
Q 014317          229 PSLLSFRYYGQAI----KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-M-QFSLFELPKLI  302 (427)
Q Consensus       229 p~L~~L~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~-~~~~~~~~~L~  302 (427)
                      ++|+.|++.+...    +..+...+.|+.++++.+..   .......+.++++|+.|+|++ +.+. + +..+..+++|+
T Consensus        54 ~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l---~~l~~~~F~~l~~L~~L~L~~-N~l~~i~~~~f~~l~~L~  129 (192)
T d1w8aa_          54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI---KEISNKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLT  129 (192)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC---CEECSSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCC
T ss_pred             ceEeeeeccccccccccccccccccccceeeeccccc---cccCHHHHhCCCcccccccCC-ccccccCHHHhcCCcccc
Confidence            5555555554422    12345567777777776653   223334456788888888887 5555 3 34456777888


Q ss_pred             EEEEEEE
Q 014317          303 DLRLRVT  309 (427)
Q Consensus       303 ~L~l~~~  309 (427)
                      +|.|+.+
T Consensus       130 ~l~L~~N  136 (192)
T d1w8aa_         130 SLNLASN  136 (192)
T ss_dssp             EEECTTC
T ss_pred             ccccccc
Confidence            8887544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.69  E-value=0.0018  Score=51.74  Aligned_cols=65  Identities=11%  Similarity=0.169  Sum_probs=36.6

Q ss_pred             ccccCCCceEEEEeccceee------cccccCCCCceeEEEEEEEccCCC---ChHHHHHHHHhCCCccEEEEEe
Q 014317          271 IISCFPQLKTLELDSCNEVY------MQFSLFELPKLIDLRLRVTTPNRE---SLLGLTCIMKACPFLQKLILQL  336 (427)
Q Consensus       271 ~~~~~~~l~~L~l~~~~~~~------~~~~~~~~~~L~~L~l~~~~~~~~---~~~~l~~ll~~~p~L~~L~i~~  336 (427)
                      .+...+.++.|.|++| .+.      +...+...++|++|++..+.....   ....+...+...+.|++|.+++
T Consensus        67 ~L~~n~~L~~L~L~~n-~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~  140 (167)
T d1pgva_          67 LIETSPSLRVLNVESN-FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF  140 (167)
T ss_dssp             HHHHCSSCCEEECCSS-BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             hhhhcccccceeeehh-hcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcC
Confidence            3445666777777663 333      334455566677777643221111   2334666777778888877754

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.0015  Score=60.72  Aligned_cols=37  Identities=5%  Similarity=0.020  Sum_probs=33.2

Q ss_pred             CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCC
Q 014317          160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSK  196 (427)
Q Consensus       160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~  196 (427)
                      ++|++|++++..+++.++..++..++.|+.|+|.+|.
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~   38 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG   38 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCC
Confidence            4789999999999999999999999999999999884

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.62  E-value=0.0032  Score=47.42  Aligned_cols=58  Identities=22%  Similarity=0.183  Sum_probs=28.7

Q ss_pred             ccCCCceEEEEeccceee-cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317          273 SCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLN  337 (427)
Q Consensus       273 ~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  337 (427)
                      ..+++++.|++++ +.+. ++..+..+++|+.|+++.+.-.  ...   . +..+|+|++|++..+
T Consensus        17 ~~l~~L~~L~ls~-N~l~~lp~~~~~l~~L~~L~l~~N~i~--~l~---~-~~~l~~L~~L~l~~N   75 (124)
T d1dcea3          17 EQLLLVTHLDLSH-NRLRALPPALAALRCLEVLQASDNALE--NVD---G-VANLPRLQELLLCNN   75 (124)
T ss_dssp             GGGTTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCSSCCC--CCG---G-GTTCSSCCEEECCSS
T ss_pred             ccCCCCCEEECCC-CccCcchhhhhhhhccccccccccccc--ccC---c-cccccccCeEECCCC
Confidence            4555566666665 4443 4444555566666665332211  111   1 345666666666543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.49  E-value=0.0006  Score=54.69  Aligned_cols=124  Identities=13%  Similarity=0.076  Sum_probs=62.8

Q ss_pred             hccccccCCCceEEEEeccceee------cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCC
Q 014317          268 VGPIISCFPQLKTLELDSCNEVY------MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGR  341 (427)
Q Consensus       268 ~~~~~~~~~~l~~L~l~~~~~~~------~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~  341 (427)
                      +..+....+++++|.|+++..+.      +...+...++|++|+|+.+.-++.....+...++..+.|++|+|..+.-..
T Consensus         7 l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~   86 (167)
T d1pgva_           7 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP   86 (167)
T ss_dssp             HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             HHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcch
Confidence            33444566677777776533333      223345556677766643222221233345566677777777776543111


Q ss_pred             CCCc--ccccCCCCccCCccEEEEecee----cCccHHHHHHHHHhccccccceEEEeec
Q 014317          342 RLGK--KRQQFPKYSHQHLKVVELHGFL----GRQFDVELAQYLFQNATMLEKLIIEPSR  395 (427)
Q Consensus       342 ~~~~--~~~~~~~~~~~~L~~v~i~~f~----g~~~e~~~~~~ll~~a~~L~~l~i~~~~  395 (427)
                       +|-  .-.++.  ...+|+++.+.+..    |.+....++..+- ..++|+++.+....
T Consensus        87 -~g~~~l~~aL~--~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~-~n~sL~~l~l~~~~  142 (167)
T d1pgva_          87 -ELLARLLRSTL--VTQSIVEFKADNQRQSVLGNQVEMDMMMAIE-ENESLLRVGISFAS  142 (167)
T ss_dssp             -HHHHHHHHHTT--TTCCCSEEECCCCSSCCCCHHHHHHHHHHHH-HCSSCCEEECCCCC
T ss_pred             -HHHHHHHHHHH--hCCcCCEEECCCCcCCCccHHHHHHHHHHHH-hCCCccEeeCcCCC
Confidence             110  001111  13467777776532    2333445555554 44788888776544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.35  E-value=0.0021  Score=51.21  Aligned_cols=65  Identities=17%  Similarity=0.174  Sum_probs=37.1

Q ss_pred             cccCCCceEEEEeccceee-----cccccCCCCceeEEEEEEEccC--CCChHHHHHHHHhCCCccEEEEEe
Q 014317          272 ISCFPQLKTLELDSCNEVY-----MQFSLFELPKLIDLRLRVTTPN--RESLLGLTCIMKACPFLQKLILQL  336 (427)
Q Consensus       272 ~~~~~~l~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~ll~~~p~L~~L~i~~  336 (427)
                      +...++++.+.+..|.--.     +...+...++|+.++|+.....  +.....+...++.+++|++|++++
T Consensus        70 l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          70 LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             HHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence            3455666666666532111     3344556667777666433211  113344666777888888888864

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.18  E-value=0.0016  Score=52.02  Aligned_cols=127  Identities=17%  Similarity=0.137  Sum_probs=72.7

Q ss_pred             hhccccccCCCceEEEEeccceee------cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCC
Q 014317          267 FVGPIISCFPQLKTLELDSCNEVY------MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHG  340 (427)
Q Consensus       267 ~~~~~~~~~~~l~~L~l~~~~~~~------~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~  340 (427)
                      .+..+..+.|+|++|.++++..+.      +...+...++|++|+++.+.-+......+...++..+.|+.|.+..+...
T Consensus         8 ~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_           8 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            344455677888888887644443      33444567778888775443333344556677788888888888654211


Q ss_pred             CCCCc--ccccCCCCccCCccEEEEecee---cCccHHHHHHHHHhccccccceEEEeeccc
Q 014317          341 RRLGK--KRQQFPKYSHQHLKVVELHGFL---GRQFDVELAQYLFQNATMLEKLIIEPSRYV  397 (427)
Q Consensus       341 ~~~~~--~~~~~~~~~~~~L~~v~i~~f~---g~~~e~~~~~~ll~~a~~L~~l~i~~~~~~  397 (427)
                      . +|.  ....+.  ...+|+.+.+....   |.+...+++.. ++..+.|+++.+......
T Consensus        88 ~-~g~~~l~~~l~--~~~~L~~l~L~l~~n~i~~~~~~~La~~-L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_          88 G-SGILALVEALQ--SNTSLIELRIDNQSQPLGNNVEMEIANM-LEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             H-HHHHHHHHGGG--GCSSCCEEECCCCSSCCCHHHHHHHHHH-HHHCSSCCEEECCCSSHH
T ss_pred             c-hhHHHHHHHHH--hCccccEEeeccCCCcCcHHHHHHHHHH-HHhCCCcCEEeCcCCCCc
Confidence            1 110  001011  23567777775432   22333444444 467889999998765533

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.15  E-value=0.0012  Score=61.40  Aligned_cols=54  Identities=19%  Similarity=0.295  Sum_probs=28.7

Q ss_pred             ccceeeeeeccccccchhhccccccCCCceEEEEeccceee------cccccCCCCceeEEEE
Q 014317          250 QLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY------MQFSLFELPKLIDLRL  306 (427)
Q Consensus       250 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~------~~~~~~~~~~L~~L~l  306 (427)
                      .|+++++......  +..+..++..+++++.|.|.+|. +.      +...+..+++|++|+|
T Consensus         3 ~l~~ld~~~~~i~--~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdL   62 (460)
T d1z7xw1           3 DIQSLDIQCEELS--DARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNL   62 (460)
T ss_dssp             EEEEEEEESCCCC--HHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEEC
T ss_pred             CCCEEEeeCCcCC--hHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEEC
Confidence            4566666555432  12334445566666777776642 22      2333455666666666

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=92.41  E-value=0.071  Score=46.89  Aligned_cols=52  Identities=15%  Similarity=0.162  Sum_probs=31.4

Q ss_pred             cCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeEEEEEE
Q 014317          246 ENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLRV  308 (427)
Q Consensus       246 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~  308 (427)
                      ..++.|++++++.+..       ..+...+++|+.|++++ ..+. +++   ..++|++|+++.
T Consensus       281 ~~~~~L~~L~Ls~N~l-------~~lp~~~~~L~~L~L~~-N~L~~l~~---~~~~L~~L~L~~  333 (353)
T d1jl5a_         281 DLPPSLEELNVSNNKL-------IELPALPPRLERLIASF-NHLAEVPE---LPQNLKQLHVEY  333 (353)
T ss_dssp             CCCTTCCEEECCSSCC-------SCCCCCCTTCCEEECCS-SCCSCCCC---CCTTCCEEECCS
T ss_pred             ccCCCCCEEECCCCcc-------CccccccCCCCEEECCC-CcCCcccc---ccCCCCEEECcC
Confidence            3456788887766552       22334577888888876 3443 332   345788887743

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=88.77  E-value=0.089  Score=46.19  Aligned_cols=92  Identities=14%  Similarity=0.116  Sum_probs=61.7

Q ss_pred             CccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEEECCceeEEEEeeeeeeeeccCC-cccceeeeeeccccc
Q 014317          185 PLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYYGQAIKINIENV-PQLVDVSIRGSHTFR  263 (427)
Q Consensus       185 p~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~~~~~~~~~~~~~~-~~L~~l~l~~~~~~~  263 (427)
                      .+|++|++.++.- +.  ++...++|++|.++++. +..+.-...+|+.|++.+...... ... +.|+.+++..+....
T Consensus        38 ~~l~~LdLs~~~L-~~--lp~~~~~L~~L~Ls~N~-l~~lp~~~~~L~~L~l~~n~l~~l-~~lp~~L~~L~L~~n~l~~  112 (353)
T d1jl5a_          38 RQAHELELNNLGL-SS--LPELPPHLESLVASCNS-LTELPELPQSLKSLLVDNNNLKAL-SDLPPLLEYLGVSNNQLEK  112 (353)
T ss_dssp             HTCSEEECTTSCC-SC--CCSCCTTCSEEECCSSC-CSSCCCCCTTCCEEECCSSCCSCC-CSCCTTCCEEECCSSCCSS
T ss_pred             cCCCEEEeCCCCC-CC--CCCCCCCCCEEECCCCC-Ccccccchhhhhhhhhhhcccchh-hhhcccccccccccccccc
Confidence            4789999988753 22  23334789999998654 666644457999999887644322 233 458999887766322


Q ss_pred             cchhhccccccCCCceEEEEecc
Q 014317          264 VTYFVGPIISCFPQLKTLELDSC  286 (427)
Q Consensus       264 ~~~~~~~~~~~~~~l~~L~l~~~  286 (427)
                          +.. ...+++++.|.+.++
T Consensus       113 ----lp~-~~~l~~L~~L~l~~~  130 (353)
T d1jl5a_         113 ----LPE-LQNSSFLKIIDVDNN  130 (353)
T ss_dssp             ----CCC-CTTCTTCCEEECCSS
T ss_pred             ----ccc-hhhhccceeeccccc
Confidence                222 357889999999874

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.74  E-value=0.049  Score=42.34  Aligned_cols=14  Identities=36%  Similarity=0.484  Sum_probs=7.5

Q ss_pred             HhCCCccEEEEEec
Q 014317          324 KACPFLQKLILQLN  337 (427)
Q Consensus       324 ~~~p~L~~L~i~~~  337 (427)
                      ...++|++|+|+.+
T Consensus        77 ~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          77 HFTPRLSRLNLSFN   90 (156)
T ss_dssp             GSCSCCCEEECCSS
T ss_pred             cccccccceeccCC
Confidence            44555555555543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.41  E-value=0.046  Score=42.82  Aligned_cols=86  Identities=24%  Similarity=0.319  Sum_probs=48.5

Q ss_pred             cCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccc-cCCCCceeEEEEEEEccCCC---ChHHHH
Q 014317          246 ENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFS-LFELPKLIDLRLRVTTPNRE---SLLGLT  320 (427)
Q Consensus       246 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~-~~~~~~L~~L~l~~~~~~~~---~~~~l~  320 (427)
                      ..++.|+.++++.+....+. .+...+..+++|+.|++++ +.+. +++. .-...+|++|.+..+.-...   ......
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~-~~~~~~~~l~~L~~L~Ls~-N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~  139 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLD-DMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS  139 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCS-GGGTHHHHSTTCCCCCCTT-SCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCc-hhHHHHhhCCccccccccc-CccccchhhhhhhccccceeecCCCCcCcCcccchhHHH
Confidence            34566777777666533211 1233346788888888887 5555 2221 12334677777744322211   123455


Q ss_pred             HHHHhCCCccEEE
Q 014317          321 CIMKACPFLQKLI  333 (427)
Q Consensus       321 ~ll~~~p~L~~L~  333 (427)
                      .+++.+|+|+.|+
T Consensus       140 ~i~~~~P~L~~LD  152 (162)
T d1koha1         140 AIRERFPKLLRLD  152 (162)
T ss_dssp             HHHTTSTTCCEET
T ss_pred             HHHHHCCCCCEEC
Confidence            6777889988874