Citrus Sinensis ID: 014320
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 427 | 2.2.26 [Sep-21-2011] | |||||||
| Q55DL0 | 503 | Dihydropyrimidinase OS=Di | yes | no | 0.882 | 0.749 | 0.539 | 1e-111 | |
| Q59699 | 495 | D-hydantoinase/dihydropyr | yes | no | 0.873 | 0.753 | 0.505 | 1e-106 | |
| Q9EQF5 | 519 | Dihydropyrimidinase OS=Mu | yes | no | 0.873 | 0.718 | 0.5 | 1e-105 | |
| Q9I676 | 479 | D-hydantoinase/dihydropyr | yes | no | 0.859 | 0.766 | 0.516 | 1e-105 | |
| Q63150 | 519 | Dihydropyrimidinase OS=Ra | yes | no | 0.873 | 0.718 | 0.489 | 1e-103 | |
| Q14117 | 519 | Dihydropyrimidinase OS=Ho | yes | no | 0.885 | 0.728 | 0.496 | 1e-103 | |
| Q61YQ1 | 518 | Dihydropyrimidinase 2 OS= | N/A | no | 0.859 | 0.708 | 0.498 | 2e-95 | |
| Q62952 | 570 | Dihydropyrimidinase-relat | no | no | 0.880 | 0.659 | 0.464 | 3e-95 | |
| Q14195 | 570 | Dihydropyrimidinase-relat | no | no | 0.880 | 0.659 | 0.459 | 6e-95 | |
| Q62188 | 570 | Dihydropyrimidinase-relat | no | no | 0.880 | 0.659 | 0.461 | 8e-95 |
| >sp|Q55DL0|DPYS_DICDI Dihydropyrimidinase OS=Dictyostelium discoideum GN=pyd2 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 403 bits (1036), Expect = e-111, Method: Compositional matrix adjust.
Identities = 206/382 (53%), Positives = 265/382 (69%), Gaps = 5/382 (1%)
Query: 49 IQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGI 108
+ + ILIK GTVVN +DV VE+GI+ + NI + +KV+DAT K ++PGGI
Sbjct: 4 VDQTGTILIKNGTVVNDDRYFKSDVLVENGIIKEISKNIEPKEGIKVVDATDKLLLPGGI 63
Query: 109 DPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA--K 165
D HTH + FMG+ ++DDF G AA+AGGTT IDFVIP G SL ++ ++K A K
Sbjct: 64 DTHTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFVIPTRGQSLLEAYDQWKKWADEK 123
Query: 166 NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCK 225
+C DY H+AIT W E VS EME++VKE+G+NSFK FMAYK SFM+ D+ + FKRCK
Sbjct: 124 VNC-DYSLHVAITWWSEQVSREMEILVKERGVNSFKCFMAYKNSFMVTDQEMYHIFKRCK 182
Query: 226 SLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP 285
LGA+A VHAENGD VFEGQK+M+E+GITGPEGH LSRP LE EAT RAI +A+ V TP
Sbjct: 183 ELGAIAQVHAENGDMVFEGQKKMLEMGITGPEGHELSRPEALEAEATNRAIVIADSVCTP 242
Query: 286 LYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRA 345
+Y+VHV S+ A + I K RK G RV GEP+ +GL +D S +W+ D+ AA +VM PPIR
Sbjct: 243 VYIVHVQSIGAADVICKHRKEGVRVYGEPIAAGLGVDGSHMWNHDWRHAAAFVMGPPIRP 302
Query: 346 SGHNKA-LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTM 404
K L LA G L VGTD+C F + QKA G DDF KIPNGVNG+E+RM +VW+
Sbjct: 303 DPRTKGVLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFTKIPNGVNGVEDRMSIVWENG 362
Query: 405 VESGQISVTDYVRLTSTEWGRL 426
V +G+++ +VR TS+E R+
Sbjct: 363 VNTGKLTWCQFVRATSSEAARI 384
|
Catalyzes the second step of the reductive pyrimidine degradation, the reversible hydrolytic ring opening of dihydropyrimidines. Can catalyzes the ring opening of 5,6-dihydrouracil to N-carbamyl-alanine and of 5,6-dihydrothymine to N-carbamyl-amino isobutyrate. Dictyostelium discoideum (taxid: 44689) EC: 3EC: .EC: 5EC: .EC: 2EC: .EC: 2 |
| >sp|Q59699|HYDA_PSEPU D-hydantoinase/dihydropyrimidinase OS=Pseudomonas putida GN=dht PE=1 SV=2 | Back alignment and function description |
|---|
Score = 384 bits (986), Expect = e-106, Method: Compositional matrix adjust.
Identities = 189/374 (50%), Positives = 249/374 (66%), Gaps = 1/374 (0%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
+LI+G TVV ADV DG++ A+ PN+ D ++LD +G+++MPGGIDPHTH
Sbjct: 2 SLLIRGATVVTHEESYPADVLCVDGLIRAIGPNLEPPTDCEILDGSGQYLMPGGIDPHTH 61
Query: 114 LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIP-INGSLTAGFEAYEKKAKNSCMDYG 172
+ + FMG+ +DFFSG AA LAGGTT IDFVIP SL F + A+ S DYG
Sbjct: 62 MQLPFMGTVASEDFFSGTAAGLAGGTTSIIDFVIPNPQQSLLEAFHTWRGWAQKSASDYG 121
Query: 173 FHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAM 232
FH+AIT W E V++EM +V + G+NSFK FMAYK + M D+ L+ F+RC LGA+
Sbjct: 122 FHVAITWWSEQVAEEMGELVAKHGVNSFKHFMAYKNAIMAADDTLVASFERCLQLGAVPT 181
Query: 233 VHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292
VHAENG+ V+ QK+++ G+TGPE H LSRP +EGEA +RAIR+AE + TPLYVVH+
Sbjct: 182 VHAENGELVYHLQKKLLAQGMTGPEAHPLSRPSQVEGEAASRAIRIAETIGTPLYVVHIS 241
Query: 293 SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKAL 352
S +A++EI AR GQ V GE + L+LDDS D+ TAA YVMSPP R H +AL
Sbjct: 242 SREALDEITYARAKGQPVYGEVLPGHLLLDDSVYRDPDWATAAGYVMSPPFRPREHQEAL 301
Query: 353 QAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISV 412
L +G L TDHC F + QKA G DDF +IPNG GIE+RM ++WD V SG++S+
Sbjct: 302 WRGLQSGNLHTTATDHCCFCAEQKAMGRDDFSRIPNGTAGIEDRMAVLWDAGVNSGRLSM 361
Query: 413 TDYVRLTSTEWGRL 426
++V LTST ++
Sbjct: 362 HEFVALTSTNTAKI 375
|
Catalyzes the hydrolysis of dihydropyrimidines and of the structurally related DL-5-mono-substituted hydantoins, to produce N-carbamoyl-D-amino acids. Pseudomonas putida (taxid: 303) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 2 |
| >sp|Q9EQF5|DPYS_MOUSE Dihydropyrimidinase OS=Mus musculus GN=Dpys PE=2 SV=2 | Back alignment and function description |
|---|
Score = 384 bits (985), Expect = e-105, Method: Compositional matrix adjust.
Identities = 190/380 (50%), Positives = 252/380 (66%), Gaps = 7/380 (1%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDD----VKVLDATGKFVMPGGID 109
++LI+GG +VN Q+ADV VEDG+V A+ ++ +D +++LDA GK V+PGGID
Sbjct: 6 RLLIRGGRIVNDDFSQVADVLVEDGVVRALGRDLLPPEDASRGLRILDAAGKLVLPGGID 65
Query: 110 PHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGS-LTAGFEAYEKKAKNS- 167
HTH+ FMGS+++DDF+ G AALAGGTTM IDF IP GS L FE + A
Sbjct: 66 THTHMQFPFMGSQSVDDFYQGTKAALAGGTTMIIDFAIPQKGSSLIEAFETWRNWADPKV 125
Query: 168 CMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL 227
C DY H+A+T W + V +EM+ + ++KG+NSFK FMAYKG +M+ DE L F +CK +
Sbjct: 126 CCDYSLHVAVTWWSDKVKEEMKTLARDKGVNSFKMFMAYKGLYMVQDEQLYAAFSQCKEI 185
Query: 228 GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287
GA+A VHAENGD + EG K+M+ LGITGPEGH L RP +E EAT RAI +A VN PLY
Sbjct: 186 GAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAVNCPLY 245
Query: 288 VVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASG 347
VVHVMS A + +A AR+AG V GEP+ +GL D W ++ AA +VM PP+R
Sbjct: 246 VVHVMSKSAAKVVADARRAGNVVYGEPIAAGLGTDGRQYWSEEWSHAAHHVMGPPLRPDP 305
Query: 348 HNKA-LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVE 406
L LA G L G+D+C FN+ QKA G DDF KIPNGVNG+E+RM ++W+ V
Sbjct: 306 LTPGFLMDLLANGDLTTTGSDNCTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVH 365
Query: 407 SGQISVTDYVRLTSTEWGRL 426
SG++ +V +TST ++
Sbjct: 366 SGKMDENRFVAVTSTNAAKI 385
|
Catalyzes the second step of the reductive pyrimidine degradation, the reversible hydrolytic ring opening of dihydropyrimidines. Can catalyzes the ring opening of 5,6-dihydrouracil to N-carbamyl-alanine and of 5,6-dihydrothymine to N-carbamyl-amino isobutyrate. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 2 |
| >sp|Q9I676|HYDA_PSEAE D-hydantoinase/dihydropyrimidinase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=dht PE=3 SV=1 | Back alignment and function description |
|---|
Score = 383 bits (983), Expect = e-105, Method: Compositional matrix adjust.
Identities = 190/368 (51%), Positives = 245/368 (66%), Gaps = 1/368 (0%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
+LI+G TVV ADV +G++ A+ N+ VLD G+++MPGGIDPHTH+
Sbjct: 3 LLIRGATVVTHEESYRADVLCANGLIQAIGENLETPSGCDVLDGGGQYLMPGGIDPHTHM 62
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIP-INGSLTAGFEAYEKKAKNSCMDYGF 173
+ FMG+ +DFFSG AA LAGGTT IDFVIP SL F + A+ S DYGF
Sbjct: 63 QLPFMGTVASEDFFSGTAAGLAGGTTSIIDFVIPNPRQSLLEAFHTWRGWAQKSAADYGF 122
Query: 174 HMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMV 233
H+AIT W + V+ EM +V + G+NSFK FMAYK + M D+ L+ F+RC LGA+ V
Sbjct: 123 HVAITWWSDEVAREMGELVAQHGVNSFKHFMAYKNAIMAADDTLVASFERCLELGAVPTV 182
Query: 234 HAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS 293
HAENG+ VF Q++++ G+TGPE H LSRPP +EGEA +RAIR+AE + TPLY+VH+ S
Sbjct: 183 HAENGELVFHLQQKLLAQGLTGPEAHPLSRPPQVEGEAASRAIRIAETLGTPLYLVHISS 242
Query: 294 MDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQ 353
+A++EIA AR GQ V GE + L+LDDS H D+ TAA YVMSPP R H +AL
Sbjct: 243 REALDEIAYARAKGQPVYGEVLAGHLLLDDSVYRHPDWATAAGYVMSPPFRPVEHQEALW 302
Query: 354 AALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVT 413
L +G L TDHC F + QKA G DDF KIPNG GIE+RM L+WD V SG++S+
Sbjct: 303 RGLQSGNLHTTATDHCCFCAEQKAMGRDDFSKIPNGTAGIEDRMALLWDAGVNSGRLSMH 362
Query: 414 DYVRLTST 421
++V LTST
Sbjct: 363 EFVALTST 370
|
Catalyzes the hydrolysis of dihydropyrimidines and of the structurally related DL-5-mono-substituted hydantoins, to produce N-carbamoyl-D-amino acids. Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 2 |
| >sp|Q63150|DPYS_RAT Dihydropyrimidinase OS=Rattus norvegicus GN=Dpys PE=1 SV=2 | Back alignment and function description |
|---|
Score = 376 bits (965), Expect = e-103, Method: Compositional matrix adjust.
Identities = 186/380 (48%), Positives = 250/380 (65%), Gaps = 7/380 (1%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQ----PNINVGDDVKVLDATGKFVMPGGID 109
++LI+GG VVN Q+ADV VEDG+V A+ P + +++LDA GK V+PGGID
Sbjct: 6 RLLIRGGRVVNDDFSQVADVLVEDGVVRALGRDLLPPGDTSRGLRILDAAGKLVLPGGID 65
Query: 110 PHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGS-LTAGFEAYEKKAKNS- 167
HTH+ FMGS+++DDF G AALAGGTTM IDF IP GS L FE + A
Sbjct: 66 THTHMQFPFMGSQSVDDFHQGTKAALAGGTTMIIDFAIPQKGSSLIEAFETWRNWADPKV 125
Query: 168 CMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL 227
C DY H+A+T W + V +EM+ + ++KG+NSFK FMAYK +M+ D+ + F +CK +
Sbjct: 126 CCDYSLHVAVTWWSDKVKEEMKTLAQDKGVNSFKMFMAYKDLYMVQDQQMYAAFSQCKEI 185
Query: 228 GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287
GA+A VHAENGD + EG K+M+ LGITGPEGH L RP +E EAT RAI +A VN PLY
Sbjct: 186 GAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAVNCPLY 245
Query: 288 VVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASG 347
+VHVMS A + IA A++ G+ V GEP+ +GL D + W+ ++ AA +VM PP+R
Sbjct: 246 IVHVMSKSAAKVIADAKREGKVVYGEPIAAGLGTDGTQYWNKEWRHAAHHVMGPPLRPDP 305
Query: 348 HNKA-LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVE 406
L LA G L G+D+C FN+ QKA G DDF KIPNGVNG+E+RM ++W+ V
Sbjct: 306 STPGFLMNLLANGDLTTTGSDNCTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVH 365
Query: 407 SGQISVTDYVRLTSTEWGRL 426
SG++ +V +TST ++
Sbjct: 366 SGKMDENRFVAVTSTNAAKI 385
|
Catalyzes the second step of the reductive pyrimidine degradation, the reversible hydrolytic ring opening of dihydropyrimidines. Can catalyzes the ring opening of 5,6-dihydrouracil to N-carbamyl-alanine and of 5,6-dihydrothymine to N-carbamyl-amino isobutyrate. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 2 |
| >sp|Q14117|DPYS_HUMAN Dihydropyrimidinase OS=Homo sapiens GN=DPYS PE=1 SV=1 | Back alignment and function description |
|---|
Score = 375 bits (963), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/385 (49%), Positives = 251/385 (65%), Gaps = 7/385 (1%)
Query: 49 IQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQ----PNINVGDDVKVLDATGKFVM 104
+ + S++LI+GG VVN ++ADV VEDG+V A+ P ++VLDA GK V+
Sbjct: 1 MAAPSRLLIRGGRVVNDDFSEVADVLVEDGVVRALGHDLLPPGGAPAGLRVLDAAGKLVL 60
Query: 105 PGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKK 163
PGGID HTH+ FMGS +IDDF G AAL+GGTTM IDF IP G SL FE +
Sbjct: 61 PGGIDTHTHMQFPFMGSRSIDDFHQGTKAALSGGTTMIIDFAIPQKGGSLIEAFETWRSW 120
Query: 164 AKNS-CMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFK 222
A C DY H+A+T W + V +EM+++V++KG+NSFK FMAYK +M+ D L E F
Sbjct: 121 ADPKVCCDYSLHVAVTWWSDQVKEEMKILVQDKGVNSFKMFMAYKDLYMVTDLELYEAFS 180
Query: 223 RCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFV 282
RCK +GA+A VHAENGD + EG K+M+ LGITGPEGH L RP +E EAT RAI +A V
Sbjct: 181 RCKEIGAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAV 240
Query: 283 NTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPP 342
N PLY+VHVMS A + IA AR+ G+ V GEP+ + L D + W+ ++ AA +VM PP
Sbjct: 241 NCPLYIVHVMSKSAAKVIADARRDGKVVYGEPIAASLGTDGTHYWNKEWHHAAHHVMGPP 300
Query: 343 IRASGHNKA-LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVW 401
+R L LA L GTD+C FN+ QKA G DDF KIPNGVNG+E+RM ++W
Sbjct: 301 LRPDPSTPDFLMNLLANDDLTTTGTDNCTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIW 360
Query: 402 DTMVESGQISVTDYVRLTSTEWGRL 426
+ V SG++ +V +TST ++
Sbjct: 361 EKGVHSGKMDENRFVAVTSTNAAKI 385
|
Catalyzes the second step of the reductive pyrimidine degradation, the reversible hydrolytic ring opening of dihydropyrimidines. Can catalyzes the ring opening of 5,6-dihydrouracil to N-carbamyl-alanine and of 5,6-dihydrothymine to N-carbamyl-amino isobutyrate. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 2 |
| >sp|Q61YQ1|DHP2_CAEBR Dihydropyrimidinase 2 OS=Caenorhabditis briggsae GN=dhp-2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 349 bits (895), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 185/371 (49%), Positives = 237/371 (63%), Gaps = 4/371 (1%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
+LIK GT+VN +DV V DG +V + P+I+ ++V+DAT +FV+PGGIDPHTH+
Sbjct: 3 LLIKNGTIVNDDAMFKSDVLVHDGKIVEIAPSIDPTPGLEVVDATDRFVIPGGIDPHTHM 62
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCM-DYG 172
+ FMG DDF G AA+AGGTTM IDFVIP G SL ++ + A + DYG
Sbjct: 63 QLPFMGEVAKDDFHRGTEAAVAGGTTMIIDFVIPTKGESLLVAYDRWRGWADPKVVCDYG 122
Query: 173 FHMAITKWDEVVSDEMEVMVK-EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALA 231
MAIT W + ++ EME++ K + GINSFKFF+AY G FM+ DE +G +C L ALA
Sbjct: 123 LSMAITSWGQEIAKEMEMVTKADYGINSFKFFLAYAGVFMVRDEEFYQGMLQCAKLRALA 182
Query: 232 MVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291
VHAENG + E + ++ GITGPEGH SRP LE EAT RA +A N PLYVVHV
Sbjct: 183 RVHAENGAVIAERCEHLLSSGITGPEGHTQSRPEELEAEATFRACTMASQANCPLYVVHV 242
Query: 292 MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPI-RASGHNK 350
MS A IA RK G V GEP+ +GL D S ++ D++ AA+Y+MSPP+ R
Sbjct: 243 MSKGAAAAIAHHRKKGAVVFGEPIAAGLATDGSHYYNEDWLHAARYIMSPPLSRDPSTPN 302
Query: 351 ALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQI 410
AL LA G L L TD+C F+ QK+ G DDF KIPNGVNG+E+RM +VWD V +G I
Sbjct: 303 ALMKLLAAGELHLTATDNCTFDCHQKSLGKDDFTKIPNGVNGVEDRMSVVWDKGVHAGII 362
Query: 411 SVTDYVRLTST 421
+V +TST
Sbjct: 363 DPMKFVAVTST 373
|
Caenorhabditis briggsae (taxid: 6238) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 2 |
| >sp|Q62952|DPYL3_RAT Dihydropyrimidinase-related protein 3 OS=Rattus norvegicus GN=Dpysl3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 348 bits (894), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 176/379 (46%), Positives = 240/379 (63%), Gaps = 3/379 (0%)
Query: 51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
+S ++LIKGG +VN AD+Y+EDG++ + N+ V VK ++A GK VMPGGID
Sbjct: 13 TSDRLLIKGGRIVNDDQSFYADIYMEDGLIKQIGDNLIVPGGVKTIEANGKMVMPGGIDV 72
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIP-INGSLTAGFEAYEKKAK-NSC 168
HTH M + G T+DDFF G AALAGGTTM ID V+P SLT +E + + A SC
Sbjct: 73 HTHFQMPYKGMTTVDDFFQGTKAALAGGTTMIIDHVVPEPESSLTEAYEKWREWADGKSC 132
Query: 169 MDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG 228
DY H+ IT W++ V E++ + KEKG+NSF +MAYK + +++ L E F LG
Sbjct: 133 CDYALHVDITHWNDSVKQEVQNLSKEKGVNSFMVYMAYKDLYQVSNTELYEIFTCLGELG 192
Query: 229 ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV 288
A+A VHAENGD + + Q RM+E+GITGPEGH LSRP LE EA RAI +A N PLYV
Sbjct: 193 AIAQVHAENGDIIAQEQARMLEMGITGPEGHVLSRPEELEAEAVFRAITVASQTNCPLYV 252
Query: 289 VHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGH 348
VMS A + I++ARK G V GEP+ + L +D + W ++ AA +V SPP+
Sbjct: 253 TKVMSKSAADLISQARKKGNVVFGEPITASLGIDGTHYWSKNWAKAAAFVTSPPLSPDPT 312
Query: 349 NK-ALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVES 407
+ + LA+G LQL G+ HC F++ QKA G D+F IP G NG+EERM ++WD V +
Sbjct: 313 TPDYINSLLASGDLQLSGSAHCTFSTAQKAIGKDNFTAIPEGTNGVEERMSVIWDKAVAT 372
Query: 408 GQISVTDYVRLTSTEWGRL 426
G++ +V +TST ++
Sbjct: 373 GKMDENQFVAVTSTNAAKI 391
|
Necessary for signaling by class 3 semaphorins and subsequent remodeling of the cytoskeleton. Plays a role in axon guidance, neuronal growth cone collapse and cell migration. Rattus norvegicus (taxid: 10116) |
| >sp|Q14195|DPYL3_HUMAN Dihydropyrimidinase-related protein 3 OS=Homo sapiens GN=DPYSL3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 348 bits (892), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 174/379 (45%), Positives = 241/379 (63%), Gaps = 3/379 (0%)
Query: 51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
+S ++LIKGG +VN AD+Y+EDG++ + N+ V VK ++A GK V+PGGID
Sbjct: 13 TSDRLLIKGGRIVNDDQSFYADIYMEDGLIKQIGDNLIVPGGVKTIEANGKMVIPGGIDV 72
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIP-INGSLTAGFEAYEKKAK-NSC 168
HTH M + G T+DDFF G AALAGGTTM ID V+P SLT +E + + A SC
Sbjct: 73 HTHFQMPYKGMTTVDDFFQGTKAALAGGTTMIIDHVVPEPESSLTEAYEKWREWADGKSC 132
Query: 169 MDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG 228
DY H+ IT W++ V E++ ++K+KG+NSF +MAYK + +++ L E F LG
Sbjct: 133 CDYALHVDITHWNDSVKQEVQNLIKDKGVNSFMVYMAYKDLYQVSNTELYEIFTCLGELG 192
Query: 229 ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV 288
A+A VHAENGD + + Q RM+E+GITGPEGH LSRP LE EA RAI +A N PLYV
Sbjct: 193 AIAQVHAENGDIIAQEQTRMLEMGITGPEGHVLSRPEELEAEAVFRAITIASQTNCPLYV 252
Query: 289 VHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGH 348
VMS A + I++ARK G V GEP+ + L +D + W ++ AA +V SPP+
Sbjct: 253 TKVMSKSAADLISQARKKGNVVFGEPITASLGIDGTHYWSKNWAKAAAFVTSPPLSPDPT 312
Query: 349 NK-ALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVES 407
+ + LA+G LQL G+ HC F++ QKA G D+F IP G NG+EERM ++WD V +
Sbjct: 313 TPDYINSLLASGDLQLSGSAHCTFSTAQKAIGKDNFTAIPEGTNGVEERMSVIWDKAVAT 372
Query: 408 GQISVTDYVRLTSTEWGRL 426
G++ +V +TST ++
Sbjct: 373 GKMDENQFVAVTSTNAAKI 391
|
Necessary for signaling by class 3 semaphorins and subsequent remodeling of the cytoskeleton. Plays a role in axon guidance, neuronal growth cone collapse and cell migration. Homo sapiens (taxid: 9606) |
| >sp|Q62188|DPYL3_MOUSE Dihydropyrimidinase-related protein 3 OS=Mus musculus GN=Dpysl3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 347 bits (891), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 175/379 (46%), Positives = 240/379 (63%), Gaps = 3/379 (0%)
Query: 51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
+S ++LIKGG +VN AD+Y+EDG++ + N+ V VK ++A GK V+PGGID
Sbjct: 13 TSDRLLIKGGRIVNDDQSFYADIYMEDGLIKQIGDNLIVPGGVKTIEANGKMVIPGGIDV 72
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIP-INGSLTAGFEAYEKKAK-NSC 168
HTH M + G T+DDFF G AALAGGTTM ID V+P SLT +E + + A SC
Sbjct: 73 HTHFQMPYKGMTTVDDFFQGTKAALAGGTTMIIDHVVPEPESSLTEAYEKWREWADGKSC 132
Query: 169 MDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG 228
DY H+ IT W++ V E++ + KEKG+NSF +MAYK + +++ L E F LG
Sbjct: 133 CDYALHVDITHWNDSVKQEVQSLSKEKGVNSFMVYMAYKDLYQVSNTELYEIFTCLGELG 192
Query: 229 ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV 288
A+A VHAENGD + + Q RM+E+GITGPEGH LSRP LE EA RAI +A N PLYV
Sbjct: 193 AIAQVHAENGDIIAQEQARMLEMGITGPEGHVLSRPEELEAEAVFRAITVASQTNCPLYV 252
Query: 289 VHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGH 348
VMS A + I++ARK G V GEP+ + L +D + W ++ AA +V SPP+
Sbjct: 253 TKVMSKSAADLISQARKKGNVVFGEPITASLGIDGTHYWSKNWAKAAAFVTSPPLSPDPT 312
Query: 349 NK-ALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVES 407
+ + LA+G LQL G+ HC F++ QKA G D+F IP G NG+EERM ++WD V +
Sbjct: 313 TPDYINSLLASGDLQLSGSAHCTFSTAQKAIGKDNFTAIPEGTNGVEERMSVIWDKAVAT 372
Query: 408 GQISVTDYVRLTSTEWGRL 426
G++ +V +TST ++
Sbjct: 373 GKMDENQFVAVTSTNAAKI 391
|
Necessary for signaling by class 3 semaphorins and subsequent remodeling of the cytoskeleton. Plays a role in axon guidance, neuronal growth cone collapse and cell migration. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 427 | ||||||
| 255580016 | 503 | dihydropyrimidinase, putative [Ricinus c | 0.988 | 0.838 | 0.826 | 0.0 | |
| 359479124 | 536 | PREDICTED: dihydropyrimidinase-like [Vit | 0.918 | 0.731 | 0.862 | 0.0 | |
| 224103983 | 531 | predicted protein [Populus trichocarpa] | 0.936 | 0.753 | 0.827 | 0.0 | |
| 297811343 | 531 | dihydropyrimidinase [Arabidopsis lyrata | 0.953 | 0.766 | 0.816 | 0.0 | |
| 449444857 | 528 | PREDICTED: dihydropyrimidinase-like [Cuc | 0.955 | 0.772 | 0.819 | 0.0 | |
| 357493879 | 542 | Dihydropyrimidinase [Medicago truncatula | 0.957 | 0.754 | 0.821 | 0.0 | |
| 42567801 | 531 | pyrimidine 2 [Arabidopsis thaliana] gi|2 | 0.953 | 0.766 | 0.808 | 0.0 | |
| 356554724 | 524 | PREDICTED: dihydropyrimidinase-like [Gly | 0.896 | 0.730 | 0.842 | 0.0 | |
| 357493867 | 534 | Dihydropyrimidinase [Medicago truncatula | 0.955 | 0.764 | 0.792 | 0.0 | |
| 224059686 | 506 | predicted protein [Populus trichocarpa] | 0.918 | 0.774 | 0.834 | 0.0 |
| >gi|255580016|ref|XP_002530842.1| dihydropyrimidinase, putative [Ricinus communis] gi|223529606|gb|EEF31555.1| dihydropyrimidinase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/427 (82%), Positives = 387/427 (90%), Gaps = 5/427 (1%)
Query: 4 SMASAFTHQLTSVALLLLLLYFPPISESNNLFCDAGSEYGGPQCGIQSSS----KILIKG 59
S+++A+ L ++ L LL P I S+N FC+ GS YG CGIQSSS KILIKG
Sbjct: 3 SISTAYRLYLQAL-LFHLLFTSPSILSSSNQFCEVGSGYGETGCGIQSSSSSSSKILIKG 61
Query: 60 GTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119
GTVVNAH Q++ADVYVEDG++VAV+PN+ V DDV VLDATGKFVMPGGIDPHTHLAM+FM
Sbjct: 62 GTVVNAHSQEVADVYVEDGVIVAVKPNLKVSDDVIVLDATGKFVMPGGIDPHTHLAMDFM 121
Query: 120 GSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITK 179
G++TIDDFFSGQAAALAGGTTMHIDFVIP+NGSL AG+EAYEKKAK SCMDYGFHMAITK
Sbjct: 122 GTQTIDDFFSGQAAALAGGTTMHIDFVIPVNGSLMAGYEAYEKKAKKSCMDYGFHMAITK 181
Query: 180 WDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGD 239
WDEV+S EME+MVKEKGINSFKFF+AYKGS MINDELL+EGFKRCKSLGALAMVHAENGD
Sbjct: 182 WDEVISREMEIMVKEKGINSFKFFLAYKGSLMINDELLLEGFKRCKSLGALAMVHAENGD 241
Query: 240 AVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEE 299
AVFEGQKRMIELGITGPEGHALSRPP+LEGEAT RAIRLA FVNTPLYVVHVMS+DAMEE
Sbjct: 242 AVFEGQKRMIELGITGPEGHALSRPPVLEGEATARAIRLASFVNTPLYVVHVMSIDAMEE 301
Query: 300 IAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATG 359
IA+ARK+GQRVIGEPVVSGLVLDDS LW DF TA+KYVMSPPIR+SGH+KALQAAL+TG
Sbjct: 302 IARARKSGQRVIGEPVVSGLVLDDSKLWDPDFTTASKYVMSPPIRSSGHDKALQAALSTG 361
Query: 360 ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLT 419
ILQLVGTDHC FNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTD+VR+T
Sbjct: 362 ILQLVGTDHCVFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDFVRVT 421
Query: 420 STEWGRL 426
STE R+
Sbjct: 422 STECARI 428
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359479124|ref|XP_002273526.2| PREDICTED: dihydropyrimidinase-like [Vitis vinifera] gi|296083879|emb|CBI24267.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/394 (86%), Positives = 366/394 (92%), Gaps = 2/394 (0%)
Query: 35 FCDAGSEYGGPQCGI--QSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDD 92
FCDAG+ +G C + +S+SK+LIKGGTVVNAHHQ+IADVYVEDGI+VAV+PNI VGDD
Sbjct: 31 FCDAGTGFGDSGCVVSSKSASKLLIKGGTVVNAHHQEIADVYVEDGIIVAVKPNIKVGDD 90
Query: 93 VKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGS 152
V VLDATGKFVMPGGIDPHTHLAMEFMG+ETIDDFFSGQAAALAGGTTMHIDFVIP+ GS
Sbjct: 91 VTVLDATGKFVMPGGIDPHTHLAMEFMGTETIDDFFSGQAAALAGGTTMHIDFVIPVKGS 150
Query: 153 LTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI 212
L+ G EAY+ KAK SCMDYGFHMAITKWDE VS EME+MVKEKGINSFKFF+AYKG+ MI
Sbjct: 151 LSKGLEAYKDKAKKSCMDYGFHMAITKWDENVSREMEIMVKEKGINSFKFFLAYKGALMI 210
Query: 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEAT 272
NDELL+EG K+CKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPP+LEGEAT
Sbjct: 211 NDELLLEGLKKCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPVLEGEAT 270
Query: 273 TRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFV 332
RAIRLA FVNTPLYVVHVMS+DAMEEIAKARK+GQRVIGEPVVSGLVLDDS LW DF+
Sbjct: 271 ARAIRLASFVNTPLYVVHVMSIDAMEEIAKARKSGQRVIGEPVVSGLVLDDSGLWDPDFI 330
Query: 333 TAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNG 392
AAKYVMSPPIRA GH+KALQAAL+TG LQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNG
Sbjct: 331 NAAKYVMSPPIRALGHDKALQAALSTGNLQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNG 390
Query: 393 IEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426
IEERMHLVWDTMVESGQISVTDYVR+TSTE R+
Sbjct: 391 IEERMHLVWDTMVESGQISVTDYVRITSTECARI 424
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224103983|ref|XP_002313270.1| predicted protein [Populus trichocarpa] gi|222849678|gb|EEE87225.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/400 (82%), Positives = 368/400 (92%)
Query: 27 PISESNNLFCDAGSEYGGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPN 86
P + +N FC+AG YG CG+ SS+K+LIKGGTVVNAHHQ++ADVYVEDGI+VAV+P+
Sbjct: 20 PSNSQSNQFCEAGIGYGEVGCGLSSSTKLLIKGGTVVNAHHQEVADVYVEDGIIVAVKPD 79
Query: 87 INVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFV 146
+ V DDVKV+DATGKFVMPGGIDPHTHLAMEFMG+ETIDDFFSGQAAALAGGTTMHIDFV
Sbjct: 80 LKVTDDVKVIDATGKFVMPGGIDPHTHLAMEFMGTETIDDFFSGQAAALAGGTTMHIDFV 139
Query: 147 IPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY 206
IP+NGSL AG E+YE+KAK SCMDYGFHMAITK+D+ VS +ME+MVKEKGINSFKFF+AY
Sbjct: 140 IPVNGSLIAGLESYEEKAKKSCMDYGFHMAITKFDDSVSRDMEIMVKEKGINSFKFFLAY 199
Query: 207 KGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPL 266
KGS M+NDELL+EG KRCKSLGALAMVHAENGDAVFEGQKRMI+LGITGPEGHALSRPPL
Sbjct: 200 KGSLMVNDELLLEGLKRCKSLGALAMVHAENGDAVFEGQKRMIQLGITGPEGHALSRPPL 259
Query: 267 LEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWL 326
LEGEAT RAIRLA FVNTPLYVVHVMS+DAMEEIAKARK+GQRV+GEPVVSGLVLDDS L
Sbjct: 260 LEGEATARAIRLAGFVNTPLYVVHVMSIDAMEEIAKARKSGQRVVGEPVVSGLVLDDSGL 319
Query: 327 WHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKI 386
W SDF A+K+VMSPPIRA+GHNK LQ AL+ G+LQLVGTDHC FNSTQKAFGIDDFRKI
Sbjct: 320 WDSDFAIASKFVMSPPIRAAGHNKVLQGALSNGVLQLVGTDHCVFNSTQKAFGIDDFRKI 379
Query: 387 PNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426
PNGVNGIEERMHLVWDTMVESGQIS+ D+VR+TSTE R+
Sbjct: 380 PNGVNGIEERMHLVWDTMVESGQISINDFVRVTSTECARV 419
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297811343|ref|XP_002873555.1| dihydropyrimidinase [Arabidopsis lyrata subsp. lyrata] gi|297319392|gb|EFH49814.1| dihydropyrimidinase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/408 (81%), Positives = 366/408 (89%), Gaps = 1/408 (0%)
Query: 19 LLLLLYFPPISESNNLFCDAGSEYGGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVEDG 78
L LL P +S+S FC AG EYG CG+ SS++ILIKGG VVNAHHQ++ADVYVEDG
Sbjct: 12 LFLLFPSPSVSDSTTQFCSAGGEYGVGSCGV-SSTRILIKGGIVVNAHHQELADVYVEDG 70
Query: 79 IVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGG 138
I+VAVQPNI VGD+V VLDATGKFVMPGGIDPHTHLAMEFMG+ETIDDFFSGQAAALAGG
Sbjct: 71 IIVAVQPNIKVGDEVTVLDATGKFVMPGGIDPHTHLAMEFMGTETIDDFFSGQAAALAGG 130
Query: 139 TTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGIN 198
TTMHIDFVIPING+L AGFEAYE K++ SCMDYGFHMAITKWDE VS +ME++VKEKGIN
Sbjct: 131 TTMHIDFVIPINGNLVAGFEAYENKSRESCMDYGFHMAITKWDEGVSRDMEILVKEKGIN 190
Query: 199 SFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEG 258
SFKFF+AYKGS M+ D+LL+EG KRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEG
Sbjct: 191 SFKFFLAYKGSLMVTDDLLLEGLKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEG 250
Query: 259 HALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSG 318
HALSRPP+LEGEAT RAIRLA FVNTPLYVVHVMS+DAM+EIAKARK+GQ+VIGEPVVSG
Sbjct: 251 HALSRPPVLEGEATARAIRLARFVNTPLYVVHVMSVDAMDEIAKARKSGQKVIGEPVVSG 310
Query: 319 LVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAF 378
L+LDD WLW DF A+KYVMSPPIR GH KALQ AL+TGILQLVGTDHC FNSTQKA
Sbjct: 311 LILDDHWLWDPDFTIASKYVMSPPIRPVGHGKALQDALSTGILQLVGTDHCTFNSTQKAL 370
Query: 379 GIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426
G+DDFRKIPNGVNG+EERMHL+WDTMV SGQIS TDYVR+TSTE R+
Sbjct: 371 GLDDFRKIPNGVNGLEERMHLIWDTMVGSGQISATDYVRITSTESARI 418
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449444857|ref|XP_004140190.1| PREDICTED: dihydropyrimidinase-like [Cucumis sativus] gi|449480993|ref|XP_004156050.1| PREDICTED: dihydropyrimidinase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/409 (81%), Positives = 375/409 (91%), Gaps = 1/409 (0%)
Query: 18 LLLLLLYFPPISESNNLFCDAGSEYGGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVED 77
L++L+ I+ES+ FCDAG CGI SSSK+LIKGGTVVNAHHQ++ADVYVED
Sbjct: 9 LIILISSLCFIAESDQ-FCDAGIGIDKSTCGITSSSKLLIKGGTVVNAHHQEVADVYVED 67
Query: 78 GIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAG 137
GI+VAV+ NI VGDDV V+DATGK+VMPGGIDPHTHLA EFMG+ET+DDFF+GQAAALAG
Sbjct: 68 GIIVAVKRNIKVGDDVAVVDATGKYVMPGGIDPHTHLAFEFMGTETVDDFFTGQAAALAG 127
Query: 138 GTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGI 197
GTTMHIDFVIP+NGSL+AGFE+Y KKAK SCMDYGFHMAITKWDEVV+ EME+MVKEKGI
Sbjct: 128 GTTMHIDFVIPVNGSLSAGFESYVKKAKKSCMDYGFHMAITKWDEVVAQEMEIMVKEKGI 187
Query: 198 NSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPE 257
NSFKFF+AYKG+ MI+DELL++G K+CKSLGALAMVHAENGDAVFEGQ+RMIELGITGPE
Sbjct: 188 NSFKFFLAYKGALMISDELLLQGLKKCKSLGALAMVHAENGDAVFEGQERMIELGITGPE 247
Query: 258 GHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVS 317
GHALSRP +LEGEAT+RAIRLA FVNTPLYVVHVMS+DAMEEIAKARKAGQ+VIGEPVVS
Sbjct: 248 GHALSRPAVLEGEATSRAIRLASFVNTPLYVVHVMSIDAMEEIAKARKAGQKVIGEPVVS 307
Query: 318 GLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKA 377
GLVLD+S LW DFVTAAKYVMSPPIR+SGH+KALQAAL+TG+LQLVGTDHC FNSTQK+
Sbjct: 308 GLVLDESGLWDPDFVTAAKYVMSPPIRSSGHDKALQAALSTGVLQLVGTDHCVFNSTQKS 367
Query: 378 FGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426
GIDDFRKIPNGVNGIEERMHLVW+TMVESGQISV DYVR+TSTE R+
Sbjct: 368 IGIDDFRKIPNGVNGIEERMHLVWNTMVESGQISVRDYVRITSTECARI 416
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357493879|ref|XP_003617228.1| Dihydropyrimidinase [Medicago truncatula] gi|355518563|gb|AET00187.1| Dihydropyrimidinase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/415 (82%), Positives = 367/415 (88%), Gaps = 6/415 (1%)
Query: 18 LLLLLLYFPPIS---ESNNLFCDAGSEYGGPQCGIQSS---SKILIKGGTVVNAHHQQIA 71
L L++ P S +N FC AG YG CG SS +K+LIKGGTVVNAHHQQIA
Sbjct: 16 LFFLIITITPSSLAQSQHNQFCVAGIGYGESTCGTSSSSSSNKLLIKGGTVVNAHHQQIA 75
Query: 72 DVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131
DVYVEDGI+VAV P I VGDDV V+DATGKFVMPGGIDPHTHL MEFM + +DDFFSGQ
Sbjct: 76 DVYVEDGIIVAVNPTIAVGDDVYVIDATGKFVMPGGIDPHTHLEMEFMNTVAVDDFFSGQ 135
Query: 132 AAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM 191
AAALAGGTTMHIDFVIP NGSLTAGFEAYEKKAK SCMDYGFHMAITKWDE VS EME+M
Sbjct: 136 AAALAGGTTMHIDFVIPTNGSLTAGFEAYEKKAKKSCMDYGFHMAITKWDETVSREMELM 195
Query: 192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIEL 251
VKEKGINSFKFFMAYKGS MI+DELL+EGFK+CKSLGALAMVHAENGDAV+EGQK+MIEL
Sbjct: 196 VKEKGINSFKFFMAYKGSLMISDELLLEGFKKCKSLGALAMVHAENGDAVYEGQKKMIEL 255
Query: 252 GITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVI 311
GITGPEGHALSRP +LEGEAT RAIRLA+FVNTPLYVVHVMS+DAMEE+AKARK+GQRVI
Sbjct: 256 GITGPEGHALSRPAVLEGEATARAIRLADFVNTPLYVVHVMSIDAMEEVAKARKSGQRVI 315
Query: 312 GEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAF 371
GEPV+SGL LDDSWLWH DF TAAKYVMSPPIR GH+KALQAAL+TG+LQLVGTDHC F
Sbjct: 316 GEPVLSGLALDDSWLWHPDFDTAAKYVMSPPIRKQGHDKALQAALSTGVLQLVGTDHCVF 375
Query: 372 NSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426
NSTQKAFGIDDFRKIPNGVNGIEERM +VWD MVESGQISVTDYVRLTSTE R+
Sbjct: 376 NSTQKAFGIDDFRKIPNGVNGIEERMRVVWDIMVESGQISVTDYVRLTSTECARI 430
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42567801|ref|NP_568258.2| pyrimidine 2 [Arabidopsis thaliana] gi|28194047|gb|AAO33381.1|AF465755_1 dihydropyrimidine amidohydrolase [Arabidopsis thaliana] gi|9759387|dbj|BAB10038.1| dihydropyrimidinase [Arabidopsis thaliana] gi|332004390|gb|AED91773.1| pyrimidine 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/408 (80%), Positives = 366/408 (89%), Gaps = 1/408 (0%)
Query: 19 LLLLLYFPPISESNNLFCDAGSEYGGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVEDG 78
L LL P SES FC AG E G CG+ SS++ILIKGGTVVNAHHQ++ADVYVE+G
Sbjct: 12 LFLLFPSPSASESTTQFCSAGRENGVGSCGV-SSTRILIKGGTVVNAHHQELADVYVENG 70
Query: 79 IVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGG 138
I+VAVQPNI VGD+V VLDATGKFVMPGGIDPHTHLAMEFMG+ETIDDFFSGQAAALAGG
Sbjct: 71 IIVAVQPNIKVGDEVTVLDATGKFVMPGGIDPHTHLAMEFMGTETIDDFFSGQAAALAGG 130
Query: 139 TTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGIN 198
TTMHIDFVIP+NG+L AGFEAYE K++ SCMDYGFHMAITKWDE VS +ME++VKEKGIN
Sbjct: 131 TTMHIDFVIPVNGNLVAGFEAYENKSRESCMDYGFHMAITKWDEGVSRDMEMLVKEKGIN 190
Query: 199 SFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEG 258
SFKFF+AYKGS M+ D+LL+EG KRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEG
Sbjct: 191 SFKFFLAYKGSLMVTDDLLLEGLKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEG 250
Query: 259 HALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSG 318
HALSRPP+LEGEAT RAIRLA F+NTPLYVVHVMS+DAM+EIAKARK+GQ+VIGEPVVSG
Sbjct: 251 HALSRPPVLEGEATARAIRLARFINTPLYVVHVMSVDAMDEIAKARKSGQKVIGEPVVSG 310
Query: 319 LVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAF 378
L+LDD WLW DF A+KYVMSPPIR GH KALQ AL+TGILQLVGTDHC FNSTQKA
Sbjct: 311 LILDDHWLWDPDFTIASKYVMSPPIRPVGHGKALQDALSTGILQLVGTDHCTFNSTQKAL 370
Query: 379 GIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426
G+DDFR+IPNGVNG+EERMHL+WDTMVESGQ+S TDYVR+TSTE R+
Sbjct: 371 GLDDFRRIPNGVNGLEERMHLIWDTMVESGQLSATDYVRITSTECARI 418
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356554724|ref|XP_003545693.1| PREDICTED: dihydropyrimidinase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/394 (84%), Positives = 357/394 (90%), Gaps = 11/394 (2%)
Query: 33 NLFCDAGSEYGGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDD 92
N FCDAG+ SSK+LIKGGTVVNAHHQQ+ADVYVEDGI+VA+ P I VGD+
Sbjct: 30 NQFCDAGT-----------SSKLLIKGGTVVNAHHQQVADVYVEDGIIVAINPTITVGDE 78
Query: 93 VKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGS 152
V V+DATGKFVMPGGIDPHTHL EFM +ET+DDFFSGQAAALAGGTTMHIDFVIP GS
Sbjct: 79 VTVIDATGKFVMPGGIDPHTHLEFEFMDTETVDDFFSGQAAALAGGTTMHIDFVIPHKGS 138
Query: 153 LTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI 212
LTAGFEAYEKKAK SCMDYGFHMAITKWDE VS EME+MVKEKGINSFKFFMAYKG+ MI
Sbjct: 139 LTAGFEAYEKKAKKSCMDYGFHMAITKWDETVSREMELMVKEKGINSFKFFMAYKGALMI 198
Query: 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEAT 272
NDELL+EGFK+CKSLGALAMVHAENGDAV+EGQ++MIELGITGPEGHALSRP +LEGEAT
Sbjct: 199 NDELLLEGFKKCKSLGALAMVHAENGDAVYEGQEKMIELGITGPEGHALSRPAVLEGEAT 258
Query: 273 TRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFV 332
RAIRLA+FVNTPLYVVHVMS+DAMEEIAKARK+GQRVIGEPV SGL LD+SWLWH DF
Sbjct: 259 ARAIRLADFVNTPLYVVHVMSIDAMEEIAKARKSGQRVIGEPVASGLALDESWLWHPDFE 318
Query: 333 TAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNG 392
TAAKYVMSPPIR GH+KALQAAL+TG+LQLVGTDHCAFNSTQKA GIDDFRKIPNGVNG
Sbjct: 319 TAAKYVMSPPIRKRGHDKALQAALSTGVLQLVGTDHCAFNSTQKALGIDDFRKIPNGVNG 378
Query: 393 IEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426
IEERMHLVWD MVESGQISVTDYVRLTSTE R+
Sbjct: 379 IEERMHLVWDIMVESGQISVTDYVRLTSTECARI 412
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357493867|ref|XP_003617222.1| Dihydropyrimidinase [Medicago truncatula] gi|355518557|gb|AET00181.1| Dihydropyrimidinase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/414 (79%), Positives = 373/414 (90%), Gaps = 6/414 (1%)
Query: 19 LLLLLYFPPISES-----NNLFCDAGSEYGGPQCGIQSSS-KILIKGGTVVNAHHQQIAD 72
LLL ++F I+ S NN FC+AG E G CG SS+ K+LIKGGTVVNAHHQ +AD
Sbjct: 9 LLLPIFFFLITTSLSQHANNQFCEAGIESGESTCGTSSSTNKLLIKGGTVVNAHHQHVAD 68
Query: 73 VYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA 132
VYVEDGI+VAVQPNI VGDDV V+DATGKFVMPGGIDPH HL M+ +G+ ++DDFFSGQ+
Sbjct: 69 VYVEDGIIVAVQPNIMVGDDVYVIDATGKFVMPGGIDPHAHLGMDALGTTSVDDFFSGQS 128
Query: 133 AALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMV 192
AALAGGTTMHIDFV+PING+LTAGFEAYEKKAKNSCMDYGFH+A+TKWDE VS +ME+MV
Sbjct: 129 AALAGGTTMHIDFVMPINGNLTAGFEAYEKKAKNSCMDYGFHVAVTKWDESVSTDMEIMV 188
Query: 193 KEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELG 252
KEKGINSFKFFMAYK M+NDELL++GFK+CKSLGALAMVHAENGDAV+ GQ++MIELG
Sbjct: 189 KEKGINSFKFFMAYKEFIMVNDELLLQGFKKCKSLGALAMVHAENGDAVYAGQQKMIELG 248
Query: 253 ITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIG 312
ITGPEGH LSRPP+LEGEAT+RAIRLA+FVNTPLYVVHVMS+DAMEEIAKARK+GQRVIG
Sbjct: 249 ITGPEGHPLSRPPMLEGEATSRAIRLADFVNTPLYVVHVMSIDAMEEIAKARKSGQRVIG 308
Query: 313 EPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFN 372
EP+VSGL LDDSWLWH DF TAAKY+MSPPIR+ GH+KALQ+ALATG+LQLVGTDHCA+N
Sbjct: 309 EPIVSGLALDDSWLWHPDFTTAAKYLMSPPIRSKGHDKALQSALATGVLQLVGTDHCAWN 368
Query: 373 STQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426
STQKA G+DDFR+I NGVNGIEERMH+VWD MVESGQISVTDYVR+TSTE R+
Sbjct: 369 STQKARGVDDFRQIINGVNGIEERMHVVWDIMVESGQISVTDYVRVTSTECARI 422
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224059686|ref|XP_002299970.1| predicted protein [Populus trichocarpa] gi|222847228|gb|EEE84775.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/393 (83%), Positives = 360/393 (91%), Gaps = 1/393 (0%)
Query: 35 FCDAGSEYGGPQCGIQSSS-KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDV 93
FC+AG Y CGI SSS K+LIKGGTVVNAHHQ+IADVYV+DGI+VAV+PN+ VGDDV
Sbjct: 2 FCEAGIGYDEVGCGISSSSTKLLIKGGTVVNAHHQEIADVYVKDGIIVAVKPNLRVGDDV 61
Query: 94 KVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSL 153
KV+DATGKFVMPGGIDPHTHLA+E + +E++DDFFSGQAAALAGGTTMHIDFVIP+NGSL
Sbjct: 62 KVIDATGKFVMPGGIDPHTHLAVEALNTESVDDFFSGQAAALAGGTTMHIDFVIPVNGSL 121
Query: 154 TAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMIN 213
AG +AYEKKAK SCMDYGFHM ITK+D++VS +ME+MVKEKGINSFKFF+AYKG M+N
Sbjct: 122 IAGLKAYEKKAKKSCMDYGFHMVITKFDDIVSRDMEIMVKEKGINSFKFFLAYKGVLMVN 181
Query: 214 DELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATT 273
DELL+EG KRCKSLGALAMVHAENGDAVFEGQKRMI+LGITGPEGHALSRPPLLEGEAT
Sbjct: 182 DELLLEGLKRCKSLGALAMVHAENGDAVFEGQKRMIQLGITGPEGHALSRPPLLEGEATA 241
Query: 274 RAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVT 333
RAIRLA FVNTPLYVVHVMS+DAMEEIAKARK+GQRV+GEPVVSGL LDDS LW SDF T
Sbjct: 242 RAIRLAGFVNTPLYVVHVMSIDAMEEIAKARKSGQRVVGEPVVSGLALDDSGLWDSDFTT 301
Query: 334 AAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGI 393
A+KYVMSPPIRASGH KALQ AL+ G+LQLVGTDHC FNSTQKA GIDDFRKIPNGVNGI
Sbjct: 302 ASKYVMSPPIRASGHGKALQDALSNGVLQLVGTDHCVFNSTQKASGIDDFRKIPNGVNGI 361
Query: 394 EERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426
EERMHLVWD MVESGQISVTDYVR+TSTE R+
Sbjct: 362 EERMHLVWDLMVESGQISVTDYVRVTSTECARI 394
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 427 | ||||||
| TAIR|locus:2177048 | 531 | PYD2 "AT5G12200" [Arabidopsis | 0.936 | 0.753 | 0.790 | 3.7e-174 | |
| DICTYBASE|DDB_G0269246 | 503 | pyd2 "dihydropyrimidinase" [Di | 0.882 | 0.749 | 0.515 | 9.4e-98 | |
| TIGR_CMR|CPS_4055 | 480 | CPS_4055 "D-hydantoinase" [Col | 0.871 | 0.775 | 0.485 | 1.1e-94 | |
| MGI|MGI:1928679 | 519 | Dpys "dihydropyrimidinase" [Mu | 0.873 | 0.718 | 0.489 | 6.1e-94 | |
| UNIPROTKB|E2RSE5 | 518 | DPYS "Uncharacterized protein" | 0.864 | 0.712 | 0.504 | 5.5e-93 | |
| RGD|68376 | 519 | Dpys "dihydropyrimidinase" [Ra | 0.873 | 0.718 | 0.481 | 5e-92 | |
| ZFIN|ZDB-GENE-070508-1 | 500 | dpys "dihydropyrimidinase" [Da | 0.880 | 0.752 | 0.482 | 6.3e-92 | |
| UNIPROTKB|E1BFN6 | 516 | DPYS "Uncharacterized protein" | 0.875 | 0.724 | 0.496 | 1e-91 | |
| UNIPROTKB|F1S1E7 | 521 | DPYS "Uncharacterized protein" | 0.875 | 0.717 | 0.490 | 2.7e-91 | |
| UNIPROTKB|Q14117 | 519 | DPYS "Dihydropyrimidinase" [Ho | 0.875 | 0.720 | 0.485 | 9.3e-91 |
| TAIR|locus:2177048 PYD2 "AT5G12200" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1692 (600.7 bits), Expect = 3.7e-174, P = 3.7e-174
Identities = 317/401 (79%), Positives = 350/401 (87%)
Query: 26 PPISESNNLFCDAGSEYGGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQP 85
P SES FC AG E G CG+ SS++ILIKGGTVVNAHHQ++ADVYVE+GI+VAVQP
Sbjct: 19 PSASESTTQFCSAGRENGVGSCGV-SSTRILIKGGTVVNAHHQELADVYVENGIIVAVQP 77
Query: 86 NINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDF 145
NI VGD+V VLDATGKFVMPGGIDPHTHLAMEFMG+ETIDDFFSGQAAALAGGTTMHIDF
Sbjct: 78 NIKVGDEVTVLDATGKFVMPGGIDPHTHLAMEFMGTETIDDFFSGQAAALAGGTTMHIDF 137
Query: 146 VIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMA 205
VIP+NG+L AGFEAYE K++ SCMDYGFHMAITKW GINSFKFF+A
Sbjct: 138 VIPVNGNLVAGFEAYENKSRESCMDYGFHMAITKWDEGVSRDMEMLVKEKGINSFKFFLA 197
Query: 206 YKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPP 265
YKGS M+ D+LL+EG KRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPP
Sbjct: 198 YKGSLMVTDDLLLEGLKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPP 257
Query: 266 LLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSW 325
+LEGEAT RAIRLA F+NTPLYVVHVMS+DAM+EIAKARK+GQ+VIGEPVVSGL+LDD W
Sbjct: 258 VLEGEATARAIRLARFINTPLYVVHVMSVDAMDEIAKARKSGQKVIGEPVVSGLILDDHW 317
Query: 326 LWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRK 385
LW DF A+KYVMSPPIR GH KALQ AL+TGILQLVGTDHC FNSTQKA G+DDFR+
Sbjct: 318 LWDPDFTIASKYVMSPPIRPVGHGKALQDALSTGILQLVGTDHCTFNSTQKALGLDDFRR 377
Query: 386 IPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426
IPNGVNG+EERMHL+WDTMVESGQ+S TDYVR+TSTE R+
Sbjct: 378 IPNGVNGLEERMHLIWDTMVESGQLSATDYVRITSTECARI 418
|
|
| DICTYBASE|DDB_G0269246 pyd2 "dihydropyrimidinase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
Identities = 197/382 (51%), Positives = 253/382 (66%)
Query: 49 IQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGI 108
+ + ILIK GTVVN +DV VE+GI+ + NI + +KV+DAT K ++PGGI
Sbjct: 4 VDQTGTILIKNGTVVNDDRYFKSDVLVENGIIKEISKNIEPKEGIKVVDATDKLLLPGGI 63
Query: 109 DPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA--K 165
D HTH + FMG+ ++DDF G AA+AGGTT IDFVIP G SL ++ ++K A K
Sbjct: 64 DTHTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFVIPTRGQSLLEAYDQWKKWADEK 123
Query: 166 NSCMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCK 225
+C DY H+AIT W G+NSFK FMAYK SFM+ D+ + FKRCK
Sbjct: 124 VNC-DYSLHVAITWWSEQVSREMEILVKERGVNSFKCFMAYKNSFMVTDQEMYHIFKRCK 182
Query: 226 SLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP 285
LGA+A VHAENGD VFEGQK+M+E+GITGPEGH LSRP LE EAT RAI +A+ V TP
Sbjct: 183 ELGAIAQVHAENGDMVFEGQKKMLEMGITGPEGHELSRPEALEAEATNRAIVIADSVCTP 242
Query: 286 LYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRA 345
+Y+VHV S+ A + I K RK G RV GEP+ +GL +D S +W+ D+ AA +VM PPIR
Sbjct: 243 VYIVHVQSIGAADVICKHRKEGVRVYGEPIAAGLGVDGSHMWNHDWRHAAAFVMGPPIRP 302
Query: 346 SGHNKA-LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTM 404
K L LA G L VGTD+C F + QKA G DDF KIPNGVNG+E+RM +VW+
Sbjct: 303 DPRTKGVLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFTKIPNGVNGVEDRMSIVWENG 362
Query: 405 VESGQISVTDYVRLTSTEWGRL 426
V +G+++ +VR TS+E R+
Sbjct: 363 VNTGKLTWCQFVRATSSEAARI 384
|
|
| TIGR_CMR|CPS_4055 CPS_4055 "D-hydantoinase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 942 (336.7 bits), Expect = 1.1e-94, P = 1.1e-94
Identities = 181/373 (48%), Positives = 246/373 (65%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
I+I+GGTVV A ADVY ++G +VA+ N++V ++ + +DATG++++PGGIDPHTH+
Sbjct: 3 IIIRGGTVVTADMTFAADVYCDEGKIVAIGDNLDVPENAECIDATGQYIIPGGIDPHTHM 62
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGF 173
+ FMG+ DDF++G AA LAGGTT IDFVIP G SL F ++ A S DY F
Sbjct: 63 QLPFMGTVASDDFYTGTAAGLAGGTTTIIDFVIPAPGQSLIEAFHQWQDWASKSAADYSF 122
Query: 174 HMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMV 233
H+AIT W G+NSFK FMAYK + M +DE L++ F+R LGA+ V
Sbjct: 123 HVAITWWDDSVYEDMGTLVNEYGVNSFKHFMAYKNAIMADDETLVKSFRRSMDLGAIPTV 182
Query: 234 HAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS 293
HAENG+ VF+ Q+ M+ GITGPEGH LSRPP +EGEA RAIR+AE +N P+YVVHV
Sbjct: 183 HAENGELVFQLQQEMLSQGITGPEGHPLSRPPAVEGEAANRAIRIAEVMNVPIYVVHVSC 242
Query: 294 MDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQ 353
+++E I +AR GQ V GE + L++DDS H + AA +VMSPP R+ H AL
Sbjct: 243 KESLEAITRARNEGQLVYGEVLAGHLLVDDSVYRHPNSEFAAAHVMSPPFRSKDHQAALW 302
Query: 354 AALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVT 413
L +G LQ TDHC F + QKA G DDF KIPNG G+E+R+ ++WD V +G++++
Sbjct: 303 KGLQSGNLQTTATDHCCFCADQKAAGKDDFTKIPNGTAGVEDRLAVLWDAGVNTGRLTIN 362
Query: 414 DYVRLTSTEWGRL 426
++V TST ++
Sbjct: 363 EFVAATSTNAAKI 375
|
|
| MGI|MGI:1928679 Dpys "dihydropyrimidinase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 935 (334.2 bits), Expect = 6.1e-94, P = 6.1e-94
Identities = 186/380 (48%), Positives = 242/380 (63%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDD----VKVLDATGKFVMPGGID 109
++LI+GG +VN Q+ADV VEDG+V A+ ++ +D +++LDA GK V+PGGID
Sbjct: 6 RLLIRGGRIVNDDFSQVADVLVEDGVVRALGRDLLPPEDASRGLRILDAAGKLVLPGGID 65
Query: 110 PHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGS-LTAGFEAYEKKAKNS- 167
HTH+ FMGS+++DDF+ G AALAGGTTM IDF IP GS L FE + A
Sbjct: 66 THTHMQFPFMGSQSVDDFYQGTKAALAGGTTMIIDFAIPQKGSSLIEAFETWRNWADPKV 125
Query: 168 CMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKSL 227
C DY H+A+T W G+NSFK FMAYKG +M+ DE L F +CK +
Sbjct: 126 CCDYSLHVAVTWWSDKVKEEMKTLARDKGVNSFKMFMAYKGLYMVQDEQLYAAFSQCKEI 185
Query: 228 GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287
GA+A VHAENGD + EG K+M+ LGITGPEGH L RP +E EAT RAI +A VN PLY
Sbjct: 186 GAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAVNCPLY 245
Query: 288 VVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASG 347
VVHVMS A + +A AR+AG V GEP+ +GL D W ++ AA +VM PP+R
Sbjct: 246 VVHVMSKSAAKVVADARRAGNVVYGEPIAAGLGTDGRQYWSEEWSHAAHHVMGPPLRPDP 305
Query: 348 HNKA-LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVE 406
L LA G L G+D+C FN+ QKA G DDF KIPNGVNG+E+RM ++W+ V
Sbjct: 306 LTPGFLMDLLANGDLTTTGSDNCTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVH 365
Query: 407 SGQISVTDYVRLTSTEWGRL 426
SG++ +V +TST ++
Sbjct: 366 SGKMDENRFVAVTSTNAAKI 385
|
|
| UNIPROTKB|E2RSE5 DPYS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 926 (331.0 bits), Expect = 5.5e-93, P = 5.5e-93
Identities = 189/375 (50%), Positives = 238/375 (63%)
Query: 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNI---NVGDDVKVLDATGKFVMPGGID 109
S++LI+GG VVNA Q ADV VEDG + A+ ++ ++VLDA+GK V+PGGID
Sbjct: 5 SRLLIRGGRVVNADLSQAADVLVEDGPMRALGRHLLPPGGAAGLRVLDASGKLVLPGGID 64
Query: 110 PHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNS- 167
HTH+ FMGS ++DDF G AALAGGTTM IDF IP G SL FE + A
Sbjct: 65 THTHMQFPFMGSRSVDDFLQGTQAALAGGTTMIIDFAIPQKGGSLIQAFETWRSWADPKV 124
Query: 168 CMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKSL 227
C DY H+A+T W G+NSFK FMAYK +M+ DE L F +CK +
Sbjct: 125 CCDYSLHVAVTWWSDQVKEEMKILTQDKGVNSFKMFMAYKDLYMVRDEELYAAFSQCKEI 184
Query: 228 GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287
GA+A+VHAENGD + EG K+M+ LGITGPEGH L RP +E EAT RAI +A VN PLY
Sbjct: 185 GAIALVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAVNCPLY 244
Query: 288 VVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASG 347
VVHVMS A + IA AR+ G+ V GEP+ + L D + WH ++ AA +VM PP+R
Sbjct: 245 VVHVMSKSAAKVIADARRDGKVVYGEPIAASLGTDGTHYWHKEWHHAAHHVMGPPLRPDP 304
Query: 348 HNKA-LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVE 406
L LA G L GTDHC FN+ QKA G DDF KIPNGVNG+E+RM ++W+ V
Sbjct: 305 STPDFLMNLLANGDLTTTGTDHCTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVH 364
Query: 407 SGQISVTDYVRLTST 421
SG++ +V +TST
Sbjct: 365 SGKMDENRFVAVTST 379
|
|
| RGD|68376 Dpys "dihydropyrimidinase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 917 (327.9 bits), Expect = 5.0e-92, P = 5.0e-92
Identities = 183/380 (48%), Positives = 242/380 (63%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNI-NVGDD---VKVLDATGKFVMPGGID 109
++LI+GG VVN Q+ADV VEDG+V A+ ++ GD +++LDA GK V+PGGID
Sbjct: 6 RLLIRGGRVVNDDFSQVADVLVEDGVVRALGRDLLPPGDTSRGLRILDAAGKLVLPGGID 65
Query: 110 PHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGS-LTAGFEAYEKKAKNS- 167
HTH+ FMGS+++DDF G AALAGGTTM IDF IP GS L FE + A
Sbjct: 66 THTHMQFPFMGSQSVDDFHQGTKAALAGGTTMIIDFAIPQKGSSLIEAFETWRNWADPKV 125
Query: 168 CMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKSL 227
C DY H+A+T W G+NSFK FMAYK +M+ D+ + F +CK +
Sbjct: 126 CCDYSLHVAVTWWSDKVKEEMKTLAQDKGVNSFKMFMAYKDLYMVQDQQMYAAFSQCKEI 185
Query: 228 GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287
GA+A VHAENGD + EG K+M+ LGITGPEGH L RP +E EAT RAI +A VN PLY
Sbjct: 186 GAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAVNCPLY 245
Query: 288 VVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASG 347
+VHVMS A + IA A++ G+ V GEP+ +GL D + W+ ++ AA +VM PP+R
Sbjct: 246 IVHVMSKSAAKVIADAKREGKVVYGEPIAAGLGTDGTQYWNKEWRHAAHHVMGPPLRPDP 305
Query: 348 HNKA-LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVE 406
L LA G L G+D+C FN+ QKA G DDF KIPNGVNG+E+RM ++W+ V
Sbjct: 306 STPGFLMNLLANGDLTTTGSDNCTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVH 365
Query: 407 SGQISVTDYVRLTSTEWGRL 426
SG++ +V +TST ++
Sbjct: 366 SGKMDENRFVAVTSTNAAKI 385
|
|
| ZFIN|ZDB-GENE-070508-1 dpys "dihydropyrimidinase" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 916 (327.5 bits), Expect = 6.3e-92, P = 6.3e-92
Identities = 183/379 (48%), Positives = 237/379 (62%)
Query: 51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
+ S ILIKGG VVN +ADVY+EDG++ V ++ V +V+DAT K V+PGGID
Sbjct: 3 AQSCILIKGGKVVNEDFSVMADVYIEDGVISGVGTDLQVAAGTRVIDATHKLVLPGGIDS 62
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNS-C 168
HTH+ + FMG+ T DDF +G AA+AGGTTM +DFVI G SL +E + + A C
Sbjct: 63 HTHMELSFMGTTTADDFQTGTQAAVAGGTTMILDFVIAQKGCSLLEAYERWRRTADPKVC 122
Query: 169 MDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG 228
DY HMA+T W GINSFK FMAYK +M+ D L F CK +G
Sbjct: 123 CDYSLHMAVTWWDDTVKKEMETLVSEKGINSFKMFMAYKDLYMLQDLELYAVFSTCKEIG 182
Query: 229 ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV 288
A+A VHAENGD + EG KRM+ LGITGPEGH + RP +E EAT RAI +A N PLYV
Sbjct: 183 AIAQVHAENGDLIAEGAKRMLSLGITGPEGHEMCRPEEVEAEATQRAITIAHATNCPLYV 242
Query: 289 VHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGH 348
VHVMS A + +A AR+ G+ V GEP+ +GL D + WH ++ AA +VM PP+R
Sbjct: 243 VHVMSKSAAKVVANARRNGRLVFGEPIAAGLGTDGTHYWHENWAHAAGFVMGPPLRPDPS 302
Query: 349 NKA-LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVES 407
L LA L + GTD+C F+ QKA G DDF KIPNGVNG+E+RM ++W+ V S
Sbjct: 303 TPGYLMDLLANDDLSVTGTDNCTFSVCQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVHS 362
Query: 408 GQISVTDYVRLTSTEWGRL 426
G++ +V +TST ++
Sbjct: 363 GKMDENRFVAVTSTNAAKI 381
|
|
| UNIPROTKB|E1BFN6 DPYS "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 914 (326.8 bits), Expect = 1.0e-91, P = 1.0e-91
Identities = 189/381 (49%), Positives = 240/381 (62%)
Query: 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNI-NVGD---DVKVLDATGKFVMPGGI 108
S +LI+GG VVN Q ADV VEDG+V AV ++ GD ++VLDA GK V+PGGI
Sbjct: 5 SLLLIRGGCVVNDDSSQEADVLVEDGVVQAVGRHVLPPGDAPAGLRVLDAAGKLVLPGGI 64
Query: 109 DPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNS 167
D HTH+ FMGS ++DDF G AALAGGTTM +DF IP G SL F+ + A
Sbjct: 65 DTHTHMQFPFMGSRSVDDFHLGTKAALAGGTTMIMDFAIPHKGHSLIEAFDTWRSWADPQ 124
Query: 168 -CMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKS 226
C DY H+A+T W G+NSFK FMAYK +M+ D L E F RCK
Sbjct: 125 VCCDYSLHVAVTWWSDQVKEEMKILTQDKGVNSFKMFMAYKDVYMVRDVELYEAFSRCKE 184
Query: 227 LGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286
+GA+A VHAENGD V EG K+M+ LGITGPEGH LSRP +E EAT RA+ +A VN PL
Sbjct: 185 IGAIAQVHAENGDLVAEGAKKMLALGITGPEGHELSRPEAVEAEATLRAVTIASAVNCPL 244
Query: 287 YVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRAS 346
YVVHVMS A + +A AR+ G+ V GEP+ +GL D + W +++ AA +VM PP+R
Sbjct: 245 YVVHVMSKSAAKVVADARRDGKVVYGEPIAAGLGTDGTHHWDREWLHAAHHVMGPPLRPD 304
Query: 347 GHNKA-LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV 405
L LA L G+D+C FNS QKA G DDF KIPNGVNG+E+RM ++W+ V
Sbjct: 305 PSTPDFLMNLLANDDLTTTGSDNCTFNSCQKALGKDDFTKIPNGVNGVEDRMSIIWEKGV 364
Query: 406 ESGQISVTDYVRLTSTEWGRL 426
SG++ +V +TST ++
Sbjct: 365 HSGKMDENRFVAVTSTNAAKI 385
|
|
| UNIPROTKB|F1S1E7 DPYS "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 910 (325.4 bits), Expect = 2.7e-91, P = 2.7e-91
Identities = 187/381 (49%), Positives = 237/381 (62%)
Query: 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNI----NVGDDVKVLDATGKFVMPGGI 108
S++LI+GG VVN Q+ADV VEDG+V A+ ++ ++VLDA GK V+PGGI
Sbjct: 5 SRLLIRGGRVVNDDSSQVADVLVEDGVVRALGRDLLPPGGAPAGLRVLDAAGKLVLPGGI 64
Query: 109 DPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNS 167
D HTH+ FMGS ++DDF G AALAGGTTM IDF IP G SL FE + A +
Sbjct: 65 DTHTHMQFPFMGSRSVDDFHQGTKAALAGGTTMIIDFAIPHKGHSLVEAFETWRSWADSK 124
Query: 168 -CMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKS 226
C DY H+A+T W G+NSFK FMAYK +M+ D L F CK
Sbjct: 125 VCCDYSLHVAVTWWSDQVKEEMKILTQEKGVNSFKMFMAYKDLYMLRDVELYTVFSWCKE 184
Query: 227 LGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286
+GA+A VHAENGD + EG K+M+ LGITGPEGH L RP +E EAT RAI +A VN PL
Sbjct: 185 IGAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAVNCPL 244
Query: 287 YVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRAS 346
YVVHVMS A IA AR+ G+ V GEP+ +GL D + W+ D+ AA +VM PP+R
Sbjct: 245 YVVHVMSKSAARVIADARRDGKVVYGEPIAAGLGTDGTHYWNRDWHHAAHHVMGPPLRPD 304
Query: 347 GHNKA-LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV 405
L LA L G+DHC FN+ QKA G DDF KIPNGVNG+E+RM ++W+ V
Sbjct: 305 PSTPDFLLNLLANDDLTTTGSDHCTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIWEKAV 364
Query: 406 ESGQISVTDYVRLTSTEWGRL 426
SG++ +V +TST ++
Sbjct: 365 HSGKMDENRFVAVTSTNAAKI 385
|
|
| UNIPROTKB|Q14117 DPYS "Dihydropyrimidinase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 905 (323.6 bits), Expect = 9.3e-91, P = 9.3e-91
Identities = 185/381 (48%), Positives = 238/381 (62%)
Query: 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNI----NVGDDVKVLDATGKFVMPGGI 108
S++LI+GG VVN ++ADV VEDG+V A+ ++ ++VLDA GK V+PGGI
Sbjct: 5 SRLLIRGGRVVNDDFSEVADVLVEDGVVRALGHDLLPPGGAPAGLRVLDAAGKLVLPGGI 64
Query: 109 DPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNS 167
D HTH+ FMGS +IDDF G AAL+GGTTM IDF IP G SL FE + A
Sbjct: 65 DTHTHMQFPFMGSRSIDDFHQGTKAALSGGTTMIIDFAIPQKGGSLIEAFETWRSWADPK 124
Query: 168 -CMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKS 226
C DY H+A+T W G+NSFK FMAYK +M+ D L E F RCK
Sbjct: 125 VCCDYSLHVAVTWWSDQVKEEMKILVQDKGVNSFKMFMAYKDLYMVTDLELYEAFSRCKE 184
Query: 227 LGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286
+GA+A VHAENGD + EG K+M+ LGITGPEGH L RP +E EAT RAI +A VN PL
Sbjct: 185 IGAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAVNCPL 244
Query: 287 YVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRAS 346
Y+VHVMS A + IA AR+ G+ V GEP+ + L D + W+ ++ AA +VM PP+R
Sbjct: 245 YIVHVMSKSAAKVIADARRDGKVVYGEPIAASLGTDGTHYWNKEWHHAAHHVMGPPLRPD 304
Query: 347 GHNKA-LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV 405
L LA L GTD+C FN+ QKA G DDF KIPNGVNG+E+RM ++W+ V
Sbjct: 305 PSTPDFLMNLLANDDLTTTGTDNCTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIWEKGV 364
Query: 406 ESGQISVTDYVRLTSTEWGRL 426
SG++ +V +TST ++
Sbjct: 365 HSGKMDENRFVAVTSTNAAKI 385
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q55DL0 | DPYS_DICDI | 3, ., 5, ., 2, ., 2 | 0.5392 | 0.8829 | 0.7495 | yes | no |
| Q8VTT5 | HYDA_BURPI | 3, ., 5, ., 2, ., - | 0.3946 | 0.8594 | 0.8030 | yes | no |
| Q9I676 | HYDA_PSEAE | 3, ., 5, ., 2, ., 2 | 0.5163 | 0.8594 | 0.7661 | yes | no |
| Q59699 | HYDA_PSEPU | 3, ., 5, ., 2, ., 2 | 0.5053 | 0.8735 | 0.7535 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.5.2 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 427 | |||
| PLN02942 | 486 | PLN02942, PLN02942, dihydropyrimidinase | 0.0 | |
| cd01314 | 447 | cd01314, D-HYD, D-hydantoinases (D-HYD) also calle | 0.0 | |
| TIGR02033 | 454 | TIGR02033, D-hydantoinase, D-hydantoinase | 0.0 | |
| PRK08323 | 459 | PRK08323, PRK08323, phenylhydantoinase; Validated | 1e-179 | |
| PRK13404 | 477 | PRK13404, PRK13404, dihydropyrimidinase; Provision | 5e-89 | |
| COG0044 | 430 | COG0044, PyrC, Dihydroorotase and related cyclic a | 8e-85 | |
| cd01315 | 447 | cd01315, L-HYD_ALN, L-Hydantoinases (L-HYDs) and A | 9e-52 | |
| cd01302 | 337 | cd01302, Cyclic_amidohydrolases, Cyclic amidohydro | 2e-49 | |
| TIGR03178 | 443 | TIGR03178, allantoinase, allantoinase | 4e-43 | |
| PRK06189 | 451 | PRK06189, PRK06189, allantoinase; Provisional | 3e-36 | |
| cd01317 | 374 | cd01317, DHOase_IIa, Dihydroorotase (DHOase), subg | 6e-34 | |
| PRK02382 | 443 | PRK02382, PRK02382, dihydroorotase; Provisional | 6e-33 | |
| cd01318 | 361 | cd01318, DHOase_IIb, Dihydroorotase (DHOase), subg | 2e-32 | |
| TIGR00857 | 411 | TIGR00857, pyrC_multi, dihydroorotase, multifuncti | 3e-32 | |
| PRK08044 | 449 | PRK08044, PRK08044, allantoinase; Provisional | 2e-31 | |
| PRK07575 | 438 | PRK07575, PRK07575, dihydroorotase; Provisional | 4e-25 | |
| PRK09236 | 444 | PRK09236, PRK09236, dihydroorotase; Reviewed | 8e-23 | |
| PRK09357 | 423 | PRK09357, pyrC, dihydroorotase; Validated | 1e-22 | |
| PRK09060 | 444 | PRK09060, PRK09060, dihydroorotase; Validated | 1e-20 | |
| PLN02795 | 505 | PLN02795, PLN02795, allantoinase | 3e-17 | |
| pfam13594 | 66 | pfam13594, Amidohydro_5, Amidohydrolase | 6e-16 | |
| PRK08417 | 386 | PRK08417, PRK08417, dihydroorotase; Provisional | 2e-15 | |
| PRK04250 | 398 | PRK04250, PRK04250, dihydroorotase; Provisional | 1e-13 | |
| PRK09237 | 380 | PRK09237, PRK09237, dihydroorotase; Provisional | 3e-12 | |
| TIGR03121 | 556 | TIGR03121, one_C_dehyd_A, formylmethanofuran dehyd | 2e-11 | |
| PRK08204 | 449 | PRK08204, PRK08204, hypothetical protein; Provisio | 4e-10 | |
| COG0402 | 421 | COG0402, SsnA, Cytosine deaminase and related meta | 4e-10 | |
| cd01304 | 541 | cd01304, FMDH_A, Formylmethanofuran dehydrogenase | 4e-10 | |
| cd01309 | 359 | cd01309, Met_dep_hydrolase_C, Metallo-dependent hy | 3e-09 | |
| cd01298 | 411 | cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enz | 6e-09 | |
| COG1229 | 575 | COG1229, FwdA, Formylmethanofuran dehydrogenase su | 6e-09 | |
| PRK10657 | 388 | PRK10657, PRK10657, isoaspartyl dipeptidase; Provi | 1e-08 | |
| PRK08393 | 424 | PRK08393, PRK08393, N-ethylammeline chlorohydrolas | 1e-08 | |
| PRK07228 | 445 | PRK07228, PRK07228, N-ethylammeline chlorohydrolas | 3e-08 | |
| cd01297 | 415 | cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D | 4e-08 | |
| COG1228 | 406 | COG1228, HutI, Imidazolonepropionase and related a | 6e-08 | |
| PRK01211 | 409 | PRK01211, PRK01211, dihydroorotase; Provisional | 2e-07 | |
| cd00854 | 374 | cd00854, NagA, N-acetylglucosamine-6-phosphate dea | 4e-07 | |
| cd01296 | 371 | cd01296, Imidazolone-5PH, Imidazolonepropionase/im | 5e-07 | |
| COG1001 | 584 | COG1001, AdeC, Adenine deaminase [Nucleotide trans | 9e-07 | |
| PRK06038 | 430 | PRK06038, PRK06038, N-ethylammeline chlorohydrolas | 9e-07 | |
| PRK09356 | 406 | PRK09356, PRK09356, imidazolonepropionase; Validat | 1e-06 | |
| COG1574 | 535 | COG1574, COG1574, Predicted metal-dependent hydrol | 1e-06 | |
| cd01292 | 275 | cd01292, metallo-dependent_hydrolases, Superfamily | 3e-06 | |
| cd01293 | 398 | cd01293, Bact_CD, Bacterial cytosine deaminase and | 4e-06 | |
| PRK07627 | 425 | PRK07627, PRK07627, dihydroorotase; Provisional | 5e-06 | |
| pfam13147 | 304 | pfam13147, Amidohydro_4, Amidohydrolase | 5e-06 | |
| cd01307 | 338 | cd01307, Met_dep_hydrolase_B, Metallo-dependent hy | 5e-06 | |
| PRK09059 | 429 | PRK09059, PRK09059, dihydroorotase; Validated | 1e-05 | |
| PRK07369 | 418 | PRK07369, PRK07369, dihydroorotase; Provisional | 1e-05 | |
| cd01300 | 479 | cd01300, YtcJ_like, YtcJ_like metal dependent amid | 2e-05 | |
| PRK09061 | 509 | PRK09061, PRK09061, D-glutamate deacylase; Validat | 3e-05 | |
| PRK07369 | 418 | PRK07369, PRK07369, dihydroorotase; Provisional | 5e-05 | |
| PRK07203 | 442 | PRK07203, PRK07203, putative chlorohydrolase/amino | 9e-05 | |
| cd01299 | 342 | cd01299, Met_dep_hydrolase_A, Metallo-dependent hy | 9e-05 | |
| TIGR01178 | 552 | TIGR01178, ade, adenine deaminase | 9e-05 | |
| COG1820 | 380 | COG1820, NagA, N-acetylglucosamine-6-phosphate dea | 1e-04 | |
| COG3964 | 386 | COG3964, COG3964, Predicted amidohydrolase [Genera | 2e-04 | |
| PRK15446 | 383 | PRK15446, PRK15446, phosphonate metabolism protein | 3e-04 | |
| cd01308 | 387 | cd01308, Isoaspartyl-dipeptidase, Isoaspartyl dipe | 3e-04 | |
| pfam01979 | 307 | pfam01979, Amidohydro_1, Amidohydrolase family | 5e-04 | |
| PRK08203 | 451 | PRK08203, PRK08203, hydroxydechloroatrazine ethyla | 0.001 | |
| PRK07572 | 426 | PRK07572, PRK07572, cytosine deaminase; Validated | 0.001 | |
| PRK06380 | 418 | PRK06380, PRK06380, metal-dependent hydrolase; Pro | 0.001 | |
| PRK05985 | 391 | PRK05985, PRK05985, cytosine deaminase; Provisiona | 0.001 | |
| PRK07583 | 438 | PRK07583, PRK07583, cytosine deaminase-like protei | 0.002 | |
| TIGR02967 | 401 | TIGR02967, guan_deamin, guanine deaminase | 0.002 | |
| pfam04909 | 272 | pfam04909, Amidohydro_2, Amidohydrolase | 0.002 | |
| PRK12394 | 379 | PRK12394, PRK12394, putative metallo-dependent hyd | 0.002 | |
| PRK00369 | 392 | PRK00369, pyrC, dihydroorotase; Provisional | 0.002 | |
| TIGR01224 | 377 | TIGR01224, hutI, imidazolonepropionase | 0.003 | |
| COG3653 | 579 | COG3653, COG3653, N-acyl-D-aspartate/D-glutamate d | 0.003 | |
| TIGR03583 | 365 | TIGR03583, EF_0837, probable amidohydrolase EF_083 | 0.003 |
| >gnl|CDD|178530 PLN02942, PLN02942, dihydropyrimidinase | Back alignment and domain information |
|---|
Score = 763 bits (1971), Expect = 0.0
Identities = 324/376 (86%), Positives = 352/376 (93%)
Query: 51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
SS+KILIKGGTVVNAHHQ++ADVYVEDGI+VAV PN+ V DDV+V+DATGKFVMPGGIDP
Sbjct: 3 SSTKILIKGGTVVNAHHQELADVYVEDGIIVAVAPNLKVPDDVRVIDATGKFVMPGGIDP 62
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMD 170
HTHLAM FMG+ETIDDFFSGQAAALAGGTTMHIDFVIP+NG+L AG+EAYEKKA+ SCMD
Sbjct: 63 HTHLAMPFMGTETIDDFFSGQAAALAGGTTMHIDFVIPVNGNLLAGYEAYEKKAEKSCMD 122
Query: 171 YGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGAL 230
YGFHMAITKWD+ VS +ME +VKEKGINSFKFFMAYKGS M+ DELL+EGFKRCKSLGAL
Sbjct: 123 YGFHMAITKWDDTVSRDMETLVKEKGINSFKFFMAYKGSLMVTDELLLEGFKRCKSLGAL 182
Query: 231 AMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH 290
AMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEAT RAIRLA+FVNTPLYVVH
Sbjct: 183 AMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATARAIRLAKFVNTPLYVVH 242
Query: 291 VMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNK 350
VMS+DAMEEIA+ARK+GQRVIGEPVVSGLVLDDS LW DF A+KYVMSPPIR +GH K
Sbjct: 243 VMSIDAMEEIARARKSGQRVIGEPVVSGLVLDDSKLWDPDFTIASKYVMSPPIRPAGHGK 302
Query: 351 ALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQI 410
ALQAAL++GILQLVGTDHC FNSTQKAFG DDFRKIPNGVNGIEERMHLVWDTMVESGQI
Sbjct: 303 ALQAALSSGILQLVGTDHCPFNSTQKAFGKDDFRKIPNGVNGIEERMHLVWDTMVESGQI 362
Query: 411 SVTDYVRLTSTEWGRL 426
S TDYVR+TSTE ++
Sbjct: 363 SPTDYVRVTSTECAKI 378
|
Length = 486 |
| >gnl|CDD|238639 cd01314, D-HYD, D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin | Back alignment and domain information |
|---|
Score = 578 bits (1493), Expect = 0.0
Identities = 204/370 (55%), Positives = 251/370 (67%), Gaps = 4/370 (1%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
++IK GT+V A AD+ +EDG +VA+ PN+ V+V+DATGK+V+PGGIDPHTHL
Sbjct: 1 LIIKNGTIVTADGSFKADILIEDGKIVAIGPNLEAPGGVEVIDATGKYVLPGGIDPHTHL 60
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYG 172
+ FMG+ T DDF SG AA AGGTT IDF IP G SL E + KA S +DYG
Sbjct: 61 ELPFMGTVTADDFESGTRAAAAGGTTTIIDFAIPNKGQSLLEAVEKWRGKADGKSVIDYG 120
Query: 173 FHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAM 232
FHM IT W + V +E+ +VK KGI+SFK FMAYKG M++DE L++ KR K LGAL M
Sbjct: 121 FHMIITDWTDSVIEELPELVK-KGISSFKVFMAYKGLLMVDDEELLDVLKRAKELGALVM 179
Query: 233 VHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292
VHAENGD + E QK+++ G TGPE HALSRPP +E EAT RAIRLAE PLY+VHV
Sbjct: 180 VHAENGDVIAELQKKLLAQGKTGPEYHALSRPPEVEAEATARAIRLAELAGAPLYIVHVS 239
Query: 293 SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKAL 352
S +A +EIA+ARK G V GE L+LDDS W D+ AKYV SPP+R +AL
Sbjct: 240 SKEAADEIARARKKGLPVYGETCPQYLLLDDSDYWK-DWFEGAKYVCSPPLRPKEDQEAL 298
Query: 353 QAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISV 412
L++G LQ VG+DHC FN QKA G DDF KIPNGV G+E RM L+W V G+I++
Sbjct: 299 WDGLSSGTLQTVGSDHCPFNFAQKARGKDDFTKIPNGVPGVETRMPLLWSEGVAKGRITL 358
Query: 413 TDYVRLTSTE 422
+V LTST
Sbjct: 359 EKFVELTSTN 368
|
The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues. Length = 447 |
| >gnl|CDD|233694 TIGR02033, D-hydantoinase, D-hydantoinase | Back alignment and domain information |
|---|
Score = 544 bits (1403), Expect = 0.0
Identities = 203/375 (54%), Positives = 247/375 (65%), Gaps = 4/375 (1%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
LI+GGTVVNA ADV +E G +VAV N+ D V+V+DATGK+V+PGGID HTHL
Sbjct: 1 KLIRGGTVVNADDVFQADVLIEGGKIVAVGSNLQPPDAVEVIDATGKYVLPGGIDVHTHL 60
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYG 172
M F G+ T DDFF+G AA AGGTT IDF +P G SLT E + +KA S +DYG
Sbjct: 61 EMPFGGTVTADDFFTGTKAAAAGGTTTIIDFALPSKGESLTEALETWHEKAEGKSVIDYG 120
Query: 173 FHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAM 232
FHM IT W++ V +E V E+GI SFK FMAYK M++DE L E KR K LGAL
Sbjct: 121 FHMMITDWNDHVLEEHIPEVVEEGITSFKVFMAYKNLLMVDDEELFEILKRAKELGALLQ 180
Query: 233 VHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292
VHAENGD + E Q R++ G TGPE HALSRPP E EA RAI LA + PLYVVHV
Sbjct: 181 VHAENGDVIAELQARLLAQGKTGPEYHALSRPPESEAEAVARAIALAALADAPLYVVHVS 240
Query: 293 SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKAL 352
+ DA++EIA+AR+ GQ V GE LVLDD+ F AKYV SPP+R AL
Sbjct: 241 TADAVDEIAEAREKGQPVYGETCPQYLVLDDTAYDKPGF-EGAKYVCSPPLREKEDQDAL 299
Query: 353 QAALATGILQLVGTDHCAFNSTQK-AFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQIS 411
+AL++G LQ VG+DHC FN QK A G DDF KIPNG G+EERM L++D V G+I+
Sbjct: 300 WSALSSGALQTVGSDHCPFNFAQKKAIGKDDFTKIPNGGPGVEERMTLLFDEGVAKGRIT 359
Query: 412 VTDYVRLTSTEWGRL 426
+ +V LTST ++
Sbjct: 360 LEKFVELTSTNPAKI 374
|
This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme. Length = 454 |
| >gnl|CDD|236240 PRK08323, PRK08323, phenylhydantoinase; Validated | Back alignment and domain information |
|---|
Score = 506 bits (1305), Expect = e-179
Identities = 192/371 (51%), Positives = 238/371 (64%), Gaps = 8/371 (2%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
LIK GTVV A ADV +EDG + A+ N +V+DATGK+VMPGGIDPHTH
Sbjct: 2 STLIKNGTVVTADDTYKADVLIEDGKIAAIGAN----LGDEVIDATGKYVMPGGIDPHTH 57
Query: 114 LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDY 171
+ M F G+ + DDF +G AA GGTT IDF + G SL EA+ KA + +DY
Sbjct: 58 MEMPFGGTVSSDDFETGTRAAACGGTTTIIDFALQPKGQSLREALEAWHGKAAGKAVIDY 117
Query: 172 GFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALA 231
GFHM IT W+EVV DEM +V+E GI SFK FMAYKG+ M++D+ L+ +R LGAL
Sbjct: 118 GFHMIITDWNEVVLDEMPELVEE-GITSFKLFMAYKGALMLDDDELLRALQRAAELGALP 176
Query: 232 MVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291
MVHAENGDA+ Q +++ G TGPE HALSRPP +EGEAT RAI LAE PLY+VHV
Sbjct: 177 MVHAENGDAIAYLQAKLLAEGKTGPEYHALSRPPEVEGEATNRAIMLAELAGAPLYIVHV 236
Query: 292 MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKA 351
+A+E I +AR GQRV GE L+LD+S D+ AKYVMSPP+R H A
Sbjct: 237 SCKEALEAIRRARARGQRVFGETCPQYLLLDESEYDGPDWFEGAKYVMSPPLRDKEHQDA 296
Query: 352 LQAALATGILQLVGTDHCAFNSTQKAF-GIDDFRKIPNGVNGIEERMHLVWDTMVESGQI 410
L L G LQ+V TDHC F QK G DF KIPNG G+E+RM L++ V +G+I
Sbjct: 297 LWRGLQDGDLQVVATDHCPFCFEQKKQLGRGDFTKIPNGTPGVEDRMPLLFSEGVMTGRI 356
Query: 411 SVTDYVRLTST 421
++ +V LTST
Sbjct: 357 TLNRFVELTST 367
|
Length = 459 |
| >gnl|CDD|184033 PRK13404, PRK13404, dihydropyrimidinase; Provisional | Back alignment and domain information |
|---|
Score = 277 bits (711), Expect = 5e-89
Identities = 135/379 (35%), Positives = 202/379 (53%), Gaps = 14/379 (3%)
Query: 57 IKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAM 116
I+GGTVV A AD+ + G + A+ + G + +DATG+ V+PGG+D H H+
Sbjct: 8 IRGGTVVTATDTFQADIGIRGGRIAALGEGLGPGA--REIDATGRLVLPGGVDSHCHIDQ 65
Query: 117 EF-MGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCM-DYGF 173
G DDF++G +A GGTT I F G SL E Y ++A + DY F
Sbjct: 66 PSGDGIMMADDFYTGTVSAAFGGTTTVIPFAAQHRGQSLREAVEDYHRRAAGKAVIDYAF 125
Query: 174 HMAITKWD-EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAM 232
H+ + EV+++E+ ++ + G SFK FM Y ++D +++ + GA+ M
Sbjct: 126 HLIVADPTEEVLTEELPALIAQ-GYTSFKVFMTYDD-LKLDDRQILDVLAVARRHGAMVM 183
Query: 233 VHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292
VHAEN D + KR++ G+T P+ HA+SRP L E EAT RAI LAE V+ P+ +VHV
Sbjct: 184 VHAENHDMIAWLTKRLLAAGLTAPKYHAISRPMLAEREATHRAIALAELVDVPILIVHVS 243
Query: 293 SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKAL 352
+A E+I +AR G ++ E L L L + AKY+ SPP R + +A+
Sbjct: 244 GREAAEQIRRARGRGLKIFAETCPQYLFLTAEDL-DRPGMEGAKYICSPPPRDKANQEAI 302
Query: 353 QAALATGILQLVGTDHCAFN---STQKAFGIDD--FRKIPNGVNGIEERMHLVWDTMVES 407
LA G ++ +DH F + K + F+ I NG+ GIE R+ L++ V
Sbjct: 303 WNGLADGTFEVFSSDHAPFRFDDTDGKLAAGANPSFKAIANGIPGIETRLPLLFSEGVVK 362
Query: 408 GQISVTDYVRLTSTEWGRL 426
G+IS+ +V LTST +L
Sbjct: 363 GRISLNRFVALTSTNPAKL 381
|
Length = 477 |
| >gnl|CDD|223122 COG0044, PyrC, Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 265 bits (679), Expect = 8e-85
Identities = 108/371 (29%), Positives = 175/371 (47%), Gaps = 24/371 (6%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
+LIK VV+ ++AD+ ++DG + A+ N+ +++DA G V+PG +D H H
Sbjct: 3 LLIKNARVVDPGEDEVADILIKDGKIAAIGKNLEPTSGAEIIDAKGLLVLPGLVDLHVHF 62
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKK----AKNSCMD 170
E + F +G AA AGG T +D P EA E K S +D
Sbjct: 63 REPGF--EHKETFETGSRAAAAGGVTTVVDM--PNTKPPIDTAEALEDKLERAKGKSVVD 118
Query: 171 YGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGAL 230
Y F+ +TK + + E V FK FM + ++D++L E + LGAL
Sbjct: 119 YAFYGGLTKGNLGKLELTERGV----EAGFKGFMDD-STGALDDDVLEEALEYAAELGAL 173
Query: 231 AMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH 290
+VHAE+ D + EG G+ PE RPP+ E A R + LA +++ H
Sbjct: 174 ILVHAEDDDLIAEGVMN---EGLRAPELGLAGRPPIAEASAIARDLELARATGARVHICH 230
Query: 291 VMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNK 350
+ + +++E I A+ G RV E L+LD+ ++PP+R +
Sbjct: 231 ISTKESVELIRAAKAEGIRVTAEVTPHHLLLDE----EDIEDLGTLAKVNPPLRDEEDRE 286
Query: 351 ALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQI 410
AL AL G++ ++ +DH +K F + P+G+ G+E + L+ T+V+ G++
Sbjct: 287 ALWEALKDGVIDVIASDHAPHTLEEKR---LPFEEAPSGIPGLETALPLLL-TLVKKGRL 342
Query: 411 SVTDYVRLTST 421
S+ V L ST
Sbjct: 343 SLERLVELLST 353
|
Length = 430 |
| >gnl|CDD|238640 cd01315, L-HYD_ALN, L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology) | Back alignment and domain information |
|---|
Score = 179 bits (457), Expect = 9e-52
Identities = 113/382 (29%), Positives = 169/382 (44%), Gaps = 34/382 (8%)
Query: 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLA 115
+IK G VV + AD+ V+ G + A+ P+I + +V+DA G VMPG ID H H+
Sbjct: 3 VIKNGRVVTPDGVREADIAVKGGKIAAIGPDIANTEAEEVIDAGGLVVMPGLIDTHVHIN 62
Query: 116 MEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING--------SLTAGFEAYEKKAKNS 167
G + F +G AA AGG T ID +P+N +L A EA + K
Sbjct: 63 E--PGRTEWEGFETGTKAAAAGGITTIID--MPLNSIPPTTTVENLEAKLEAAQGKLH-- 116
Query: 168 CMDYGFHMAITKWDEVVS---DEMEVMVKEKGINSFKFFMAYKG--SF-MINDELLIEGF 221
+D GF W +V D++ + E G+ FK F+ G F ++DE L E
Sbjct: 117 -VDVGF------WGGLVPGNLDQLRPLD-EAGVVGFKCFLCPSGVDEFPAVDDEQLEEAM 168
Query: 222 KRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEF 281
K G++ VHAEN + Q++ G + SRP E EA R + LA+
Sbjct: 169 KELAKTGSVLAVHAENPEITEALQEQAKAKGKRDYRDYLASRPVFTEVEAIQRILLLAKE 228
Query: 282 VNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYV-MS 340
L++VH+ S +A+ I +AR G V E L D +
Sbjct: 229 TGCRLHIVHLSSAEAVPLIREARAEGVDVTVETCPHYLTFT-----AEDVPDGGTEFKCA 283
Query: 341 PPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLV 400
PPIR + + + L AL G + +V +DH K G DF K G++G++ + ++
Sbjct: 284 PPIRDAANQEQLWEALENGDIDMVVSDHSPCTPELKLLGKGDFFKAWGGISGLQLGLPVM 343
Query: 401 WDTMVESGQISVTDYVRLTSTE 422
V +S+ D RL
Sbjct: 344 LTEAVNKRGLSLEDIARLMCEN 365
|
But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid. Length = 447 |
| >gnl|CDD|238627 cd01302, Cyclic_amidohydrolases, Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 2e-49
Identities = 93/330 (28%), Positives = 139/330 (42%), Gaps = 51/330 (15%)
Query: 101 KFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVI--PINGSLTAGFE 158
V+PG ID H HL + G+ +DF SG AA AGG T ID P L A
Sbjct: 1 LLVLPGFIDIHVHL-RDPGGTTYKEDFESGSRAAAAGGVTTVIDMPNTGPPPIDLPAIEL 59
Query: 159 AYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI--NDEL 216
+ ++S +D+ FH I V+DE++ + + GINS K FM Y + +D
Sbjct: 60 KIKLAEESSYVDFSFHAGI--GPGDVTDELKKLF-DAGINSLKVFMNYYFGELFDVDDGT 116
Query: 217 LIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAI 276
L+ F S G MVHAE RA
Sbjct: 117 LMRTFLEIASRGGPVMVHAE-------------------------------------RAA 139
Query: 277 RLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAK 336
+LAE +++ HV S +A+E I A+ G +V E L LD+S L + A
Sbjct: 140 QLAEEAGANVHIAHVSSGEALELIKFAKNKGVKVTCEVCPHHLFLDESMLRLN----GAW 195
Query: 337 YVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEER 396
++PP+R+ +AL + G + + +DH + +K G D K P G G+E R
Sbjct: 196 GKVNPPLRSKEDREALWEGVKNGKIDTIASDHAPHSKEEKESG-KDIWKAPPGFPGLETR 254
Query: 397 MHLVWDTMVESGQISVTDYVRLTSTEWGRL 426
+ ++ T +S+ V + S R+
Sbjct: 255 LPILL-TEGVKRGLSLETLVEILSENPARI 283
|
Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines. Length = 337 |
| >gnl|CDD|163175 TIGR03178, allantoinase, allantoinase | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 4e-43
Identities = 112/378 (29%), Positives = 179/378 (47%), Gaps = 27/378 (7%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
++I+GG V+ + ++ ADV V+ G + A+ P +G K++DA G V PG +D H H+
Sbjct: 2 LIIRGGRVILPNGEREADVGVKGGKIAAIGP-DILGPAAKIIDAGGLVVFPGVVDTHVHI 60
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGS-LTAGFEAYEKKAK----NSCM 169
G + F +G AA AGG T +ID +P+N T + E K + +
Sbjct: 61 NEP--GRTEWEGFETGTRAAAAGGITTYID--MPLNSIPATTTRASLEAKFEAAKGKLAV 116
Query: 170 DYGFHMAITKWDEVVSDEMEVM--VKEKGINSFKFFMAYKGS--FM-INDELLIEGFKRC 224
D GF W +V ++ + + E G+ FK F++ G F ++D L +G +
Sbjct: 117 DVGF------WGGLVPYNLDDLRELDEAGVVGFKAFLSPSGDDEFPHVDDWQLYKGMREL 170
Query: 225 KSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNT 284
LG L +VHAEN + G G + + SRP E EA R + LA+
Sbjct: 171 ARLGQLLLVHAENPAITSALGEEAPPQGGVGADAYLASRPVFAEVEAIRRTLALAKVTGC 230
Query: 285 PLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIR 344
++VVH+ S +A+E I +A++ G V E L L + D T AK +PPIR
Sbjct: 231 RVHVVHLSSAEAVELITEAKQEGLDVTVETCPHYLTLTAEEV--PDGGTLAK--CAPPIR 286
Query: 345 ASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTM 404
+ + L AL G++ V +DH K DF K G+ G++ + +++D
Sbjct: 287 DLANQEGLWEALLNGLIDCVVSDHSPCTPDLKR--AGDFFKAWGGIAGLQSTLDVMFDEA 344
Query: 405 VESGQISVTDYVRLTSTE 422
V+ + + D RL +T
Sbjct: 345 VQKRGLPLEDIARLMATN 362
|
This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases. Length = 443 |
| >gnl|CDD|235732 PRK06189, PRK06189, allantoinase; Provisional | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 3e-36
Identities = 108/383 (28%), Positives = 174/383 (45%), Gaps = 37/383 (9%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
++I+GG VV AD+ +++G + + P I+ +++DA G +V PG ID H H
Sbjct: 5 LIIRGGKVVTPEGVYRADIGIKNGKIAEIAPEIS-SPAREIIDADGLYVFPGMIDVHVHF 63
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGS---LTAGFEAYEKKAK----NS 167
G + F +G AA AGG T + D +P+N +T EA + KA+ S
Sbjct: 64 NEP--GRTHWEGFATGSAALAAGGCTTYFD--MPLNSIPPTVTR--EALDAKAELARQKS 117
Query: 168 CMDYGFHMAITKWDEVVSDEMEVMVK--EKGINSFKFFMAYKGS--FMINDEL-LIEGFK 222
+D+ W +V +E + + E G+ FK FM+ G+ F +D+L L EG K
Sbjct: 118 AVDFAL------WGGLVPGNLEHLRELAEAGVIGFKAFMSNSGTDEFRSSDDLTLYEGMK 171
Query: 223 RCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFV 282
+LG + +HAE+ + + G T + SRP + E EA RA+ A+
Sbjct: 172 EIAALGKILALHAESDALTRHLTTQARQQGKTDVRDYLESRPVVAELEAVQRALLYAQET 231
Query: 283 NTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFV---TAAKYVM 339
PL+ VH+ S A+ IA+A+K G V E L+ DF AK
Sbjct: 232 GCPLHFVHISSGKAVALIAEAKKRGVDVSVETCPHYLLFT-----EEDFERIGAVAK--C 284
Query: 340 SPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHL 399
+PP+R+ + L L G + ++ +DH K DDF + G++G + + +
Sbjct: 285 APPLRSRSQKEELWRGLLAGEIDMISSDHSPCPPELKEG--DDFFLVWGGISGGQSTLLV 342
Query: 400 VWDTMVESGQISVTDYVRLTSTE 422
+ I + RL +T
Sbjct: 343 MLTEGYIERGIPLETIARLLATN 365
|
Length = 451 |
| >gnl|CDD|238642 cd01317, DHOase_IIa, Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 6e-34
Identities = 91/337 (27%), Positives = 142/337 (42%), Gaps = 28/337 (8%)
Query: 92 DVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTT----M-HIDFV 146
D +V+DA GK + PG +D H HL G E + SG AA AGG T M + + V
Sbjct: 1 DAEVIDAEGKILAPGLVDLHVHL--REPGFEYKETLESGAKAAAAGGFTTVVCMPNTNPV 58
Query: 147 IPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMV--KEKGINSFKFFM 204
I + + + G A+TK + E+ + E G F
Sbjct: 59 IDNPAVVELLKNRAKDVGIVRVLPIG---ALTKGLKGE--ELTEIGELLEAGAVGF---- 109
Query: 205 AYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRP 264
+ G + + ELL + L +VH E+ G M E + G P
Sbjct: 110 SDDGKPIQDAELLRRALEYAAMLDLPIIVHPEDPSLAGGGV--MNEGKVASRLGLP-GIP 166
Query: 265 PLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDS 324
P E R + LAE ++ H+ + ++E I KA+ G V E L+LDD
Sbjct: 167 PEAETIMVARDLELAEATGARVHFQHLSTARSLELIRKAKAKGLPVTAEVTPHHLLLDDE 226
Query: 325 WLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFR 384
L + T AK ++PP+R+ +AL AL G + + +DH +K +
Sbjct: 227 AL--ESYDTNAK--VNPPLRSEEDREALIEALKDGTIDAIASDHAPHTDEEKDLPFAE-- 280
Query: 385 KIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTST 421
P G+ G+E + L+W +V+ G +++ D +R ST
Sbjct: 281 -APPGIIGLETALPLLWTLLVKGGLLTLPDLIRALST 316
|
This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth. Length = 374 |
| >gnl|CDD|179417 PRK02382, PRK02382, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 6e-33
Identities = 97/355 (27%), Positives = 159/355 (44%), Gaps = 37/355 (10%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
L+K G V + Q DV ++ G + AV +++ +V+DA G ++PGGID H H
Sbjct: 4 ALLKDGRVYYNNSLQPRDVRIDGGKITAVGKDLDGSSSEEVIDARGMLLLPGGIDVHVH- 62
Query: 115 AMEF--MGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKA----KNSC 168
F G + +++G +A AGG T +D P T E++++KA + S
Sbjct: 63 ---FREPGYTHKETWYTGSRSAAAGGVTTVVD--QPNTDPPTVDGESFDEKAELAARKSI 117
Query: 169 MDYGFHMAITK-WDEVVSDEMEVMVKEKGINSF-KFFMA-YKGSFMINDELLIEGFKRCK 225
+D+G + +T WD + S + E+G+ + + FMA G I++EL E
Sbjct: 118 VDFGINGGVTGNWDPLES------LWERGVFALGEIFMADSTGGMGIDEELFEEALAEAA 171
Query: 226 SLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP 285
LG LA VHAE+ D E K + G + + RP E A RA+ +A
Sbjct: 172 RLGVLATVHAEDEDLFDELAKLLK--GDADADAWSAYRPAAAEAAAVERALEVASETGAR 229
Query: 286 LYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVL-DDSWLWHSDFVTAAKYVMSPPIR 344
+++ H+ + + ++ + + E L L W T K M+PP+R
Sbjct: 230 IHIAHISTPEGVDAARRE-----GITCEVTPHHLFLSRRDW---ERLGTFGK--MNPPLR 279
Query: 345 ASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHL 399
+ +AL L G + +V +DH +K D P+GV G+E + L
Sbjct: 280 SEKRREALWERLNDGTIDVVASDHAPHTREEKD---ADIWDAPSGVPGVETMLPL 331
|
Length = 443 |
| >gnl|CDD|238643 cd01318, DHOase_IIb, Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 2e-32
Identities = 95/333 (28%), Positives = 144/333 (43%), Gaps = 36/333 (10%)
Query: 100 GKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEA 159
G ++PG ID H H E G +DF SG AA AGG T +D +P T EA
Sbjct: 1 GLLILPGVIDIHVHF-REP-GLTYKEDFVSGSRAAAAGGVTTVMD--MPNTKPPTTTAEA 56
Query: 160 YEKK----AKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYK-GSFMIND 214
+K A S +DYG + +T E + + + +K FM G + ++
Sbjct: 57 LYEKLRLAAAKSVVDYGLYFGVTG-SEDLE-----ELDKAPPAGYKIFMGDSTGDLLDDE 110
Query: 215 ELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTR 274
E L F L HAE+ D + E +K + H R AT R
Sbjct: 111 ETLERIFAEGS---VLVTFHAEDEDRLRENRKELKGESA-----HPRIRDAEAAAVATAR 162
Query: 275 AIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTA 334
A++LA L++ HV + + ++ I KA+ V E L LD D+
Sbjct: 163 ALKLARRHGARLHICHVSTPEELKLIKKAKP---GVTVEVTPHHLFLDVE-----DYDRL 214
Query: 335 AKYV-MSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGI 393
++PP+R+ KAL ALA G + ++ +DH +K G P+G+ G+
Sbjct: 215 GTLGKVNPPLRSREDRKALLQALADGRIDVIASDHAPHTLEEKRKGY---PAAPSGIPGV 271
Query: 394 EERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426
E + L+ T+V G +S++ VRLTS R+
Sbjct: 272 ETALPLML-TLVNKGILSLSRVVRLTSHNPARI 303
|
This group contains the archeal members of the DHOase family. Length = 361 |
| >gnl|CDD|233153 TIGR00857, pyrC_multi, dihydroorotase, multifunctional complex type | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 3e-32
Identities = 89/354 (25%), Positives = 150/354 (42%), Gaps = 18/354 (5%)
Query: 71 ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSG 130
D+ VE G + + D +V+DA G V+PG ID H HL + G E +D SG
Sbjct: 6 VDILVEGGRIKKIGKLRIPPDA-EVIDAKGLLVLPGFIDLHVHLR-DP-GEEYKEDIESG 62
Query: 131 QAAALAGGTTMHIDF--VIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEM 188
AA GG T D P + ++ K S +D + +T+ ++
Sbjct: 63 SKAAAHGGFTTVADMPNTKPPIDTPETLEWKLQRLKKVSLVDVHLYGGVTQGNQGKELTE 122
Query: 189 EVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRM 248
+KE G F GS + + + + G +HAE+ D ++ G
Sbjct: 123 AYELKEAGAVGRMFTD--DGSEVQDILSMRRALEYAAIAGVPIALHAEDPDLIYGGVMH- 179
Query: 249 IELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQ 308
G + + +RPP E A R + LA+ P+++ H+ + +++E I KA+ G
Sbjct: 180 --EGPSAAQLGLPARPPEAEEVAVARLLELAKHAGCPVHICHISTKESLELIVKAKSQGI 237
Query: 309 RVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDH 368
++ E L+L + + D ++PP+R AL L GI+ ++ TDH
Sbjct: 238 KITAEVTPHHLLLSEEDVARLD----GNGKVNPPLREKEDRLALIEGLKDGIIDIIATDH 293
Query: 369 CAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTE 422
+K P G+ G+E + L+ +V+ G IS+ D +R+ S
Sbjct: 294 APHTLEEKTKEFAA---APPGIPGLETALPLLLQLLVK-GLISLKDLIRMLSIN 343
|
In contrast to the homodimeric type of dihydroorotase found in E. coli, this class tends to appear in a large, multifunctional complex with aspartate transcarbamoylase. Homologous domains appear in multifunctional proteins of higher eukaryotes. In some species, including Pseudomonas putida and P. aeruginosa, this protein is inactive but is required as a non-catalytic subunit of aspartate transcarbamoylase (ATCase). In these species, a second, active dihydroorotase is also present. The seed for this model does not include any example of the dihydroorotase domain of eukaryotic multidomain pyrimidine synthesis proteins. All proteins described by This model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]. Length = 411 |
| >gnl|CDD|169193 PRK08044, PRK08044, allantoinase; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 2e-31
Identities = 108/390 (27%), Positives = 177/390 (45%), Gaps = 45/390 (11%)
Query: 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPH 111
S ++IK GTV+ + ++ D+ V+ G + A+ ++ GD +V+DA+G V PG +D H
Sbjct: 2 SFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDL--GDAKEVMDASGLVVSPGMVDAH 59
Query: 112 THLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPIN--------GSLTAGFEAYEKK 163
TH++ G + + +G AA GG T I+ +P+N S+ F+A + K
Sbjct: 60 THISEP--GRSHWEGYETGTRAAAKGGITTMIE--MPLNQLPATVDRASIELKFDAAKGK 115
Query: 164 AKNSCMDYGFHMAITKWDEVVSDEMEVM--VKEKGINSFKFFMA------YKGSFM-IND 214
G +VS ++ + + E G+ FK F+A F +ND
Sbjct: 116 LTIDAAQLG---------GLVSYNLDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVND 166
Query: 215 ELLIEGFKRCKSLGALAMVHAENG---DAVFEGQKRMIELGITGPEGHALSRPPLLEGEA 271
+G ++ LG +VH EN D + E KR G + SRP E EA
Sbjct: 167 WQFYKGAQKLGELGQPVLVHCENALICDELGEEAKRE---GRVTAHDYVASRPVFTEVEA 223
Query: 272 TTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDF 331
R + LA+ L+V H+ S + +EE+ +AR+ GQ V E VLD
Sbjct: 224 IRRVLYLAKVAGCRLHVCHISSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEE--I 281
Query: 332 VTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVN 391
T AK SPPIR + K + L G + + +DH KA + + G+
Sbjct: 282 GTLAK--CSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPEMKA---GNIMEAWGGIA 336
Query: 392 GIEERMHLVWDTMVESGQISVTDYVRLTST 421
G++ M +++D V+ +S+ + +L +T
Sbjct: 337 GLQNCMDVMFDEAVQKRGMSLPMFGKLMAT 366
|
Length = 449 |
| >gnl|CDD|236055 PRK07575, PRK07575, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 4e-25
Identities = 97/382 (25%), Positives = 167/382 (43%), Gaps = 40/382 (10%)
Query: 51 SSSKILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGID 109
+LI+ ++ + + DV VEDG +VA+ P I+ V+DA G ++PG ID
Sbjct: 1 MMMSLLIRNARILLPSGELLLGDVLVEDGKIVAIAPEISATAVDTVIDAEGLTLLPGVID 60
Query: 110 PHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKK----AK 165
P H G E +D F+ A GG T ++ +P LT A + K A+
Sbjct: 61 PQVHFREP--GLEHKEDLFTASRACAKGGVTSFLE--MPNTKPLTTTQAALDDKLARAAE 116
Query: 166 NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFM-AYKGSFMINDELLIEG-FKR 223
++YGF + T D + ++ K FM + G ++++E +E F
Sbjct: 117 KCVVNYGFFIGAT------PDNLPELLTANPTCGIKIFMGSSHGPLLVDEEAALERIFAE 170
Query: 224 CKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN 283
L A VHAE+ + + GI+ P H+ + AT A++L++
Sbjct: 171 GTRLIA---VHAEDQARIRARRAEFA--GISDPADHSQIQDEEAALLATRLALKLSKKYQ 225
Query: 284 TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSD----FVTAAKYVM 339
L+++H+ + E + + + V+ V L ++D T A+ M
Sbjct: 226 RRLHILHLSTAIEAELLRQDKP--------SWVTAEVTPQHLLLNTDAYERIGTLAQ--M 275
Query: 340 SPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHL 399
+PP+R+ N+AL AL G++ + TDH +KA + P+G+ G+E + L
Sbjct: 276 NPPLRSPEDNEALWQALRDGVIDFIATDHAPHTLEEKA---QPYPNSPSGMPGVETSLPL 332
Query: 400 VWDTMVESGQISVTDYVRLTST 421
+ + G+ +V VR ST
Sbjct: 333 MLTAAMR-GKCTVAQVVRWMST 353
|
Length = 438 |
| >gnl|CDD|181716 PRK09236, PRK09236, dihydroorotase; Reviewed | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 8e-23
Identities = 86/332 (25%), Positives = 145/332 (43%), Gaps = 39/332 (11%)
Query: 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
+ILIK +VN DV +E+G + + +I+ V+DA G++++PG ID
Sbjct: 2 KRILIKNARIVNEGKIFEGDVLIENGRIAKIASSISAKSADTVIDAAGRYLLPGMIDDQV 61
Query: 113 HLAMEFM--GSETIDDFFSGQAAALAGGTTMHIDF--VIPINGSLTAGFEAYEKKAKNSC 168
H F G D S AA+AGG T ++ P +L A Y+ A+ S
Sbjct: 62 H----FREPGLTHKGDIASESRAAVAGGITSFMEMPNTNPPTTTLEALEAKYQIAAQRSL 117
Query: 169 MDYGFHMAITKWDEVVSDEMEVMVK--EKGINSFKFFM-AYKGSFMINDELLIEG-FKRC 224
+Y F+ T +D ++ + + K + K FM A G+ ++++ +E F+
Sbjct: 118 ANYSFYFGAT------NDNLDEIKRLDPKRVCGVKVFMGASTGNMLVDNPETLERIFRDA 171
Query: 225 KSLGALAMVHAENGDAVFEGQKRMIEL---GITGPEGHALSRPPLLEGEA----TTRAIR 277
+L A H E+ + + E I E H L R EA ++ A+
Sbjct: 172 PTLIA---THCEDTPTIKANLAKYKEKYGDDIP-AEMHPLIR----SAEACYKSSSLAVS 223
Query: 278 LAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKY 337
LA+ T L+V+H+ + + A +R+ E V L DD SD+
Sbjct: 224 LAKKHGTRLHVLHISTAKELSLFENGPLAEKRITAEVCVHHLWFDD-----SDYARLGNL 278
Query: 338 VM-SPPIRASGHNKALQAALATGILQLVGTDH 368
+ +P I+ + +AL+ ALA + ++ TDH
Sbjct: 279 IKCNPAIKTASDREALRQALADDRIDVIATDH 310
|
Length = 444 |
| >gnl|CDD|236479 PRK09357, pyrC, dihydroorotase; Validated | Back alignment and domain information |
|---|
Score = 98.7 bits (247), Expect = 1e-22
Identities = 100/400 (25%), Positives = 162/400 (40%), Gaps = 78/400 (19%)
Query: 53 SKILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPH 111
ILIK G V++ ++ADV ++DG + A+ NI + +V+DATG V PG +D H
Sbjct: 1 MMILIKNGRVIDPKGLDEVADVLIDDGKIAAIGENIE-AEGAEVIDATGLVVAPGLVDLH 59
Query: 112 THLAMEFMGSETIDDFFSGQAAALAGG-TTMH--------ID------------------ 144
HL G E + +G AA AGG TT+ ID
Sbjct: 60 VHLREP--GQEDKETIETGSRAAAAGGFTTVVAMPNTKPVIDTPEVVEYVLDRAKEAGLV 117
Query: 145 FVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFM 204
V+P+ G++T G G + E + KE G+ +F
Sbjct: 118 DVLPV-GAITKGLA-------------GEELT----------EFGAL-KEAGVVAF---- 148
Query: 205 AYKGSFMINDELLIEGFKRCKSLGALAMVHAE----NGDAVFEGQKRMIELGITGPEGHA 260
+ G + + L+ + K+L L H E V + LG+ G
Sbjct: 149 SDDGIPVQDARLMRRALEYAKALDLLIAQHCEDPSLTEGGVMNEGEVSARLGLPG----- 203
Query: 261 LSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLV 320
P + E R + LAE +++ HV + ++E I A+ G +V E L+
Sbjct: 204 --IPAVAEEVMIARDVLLAEATGARVHICHVSTAGSVELIRWAKALGIKVTAEVTPHHLL 261
Query: 321 LDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGI 380
L D L D Y ++PP+R +AL L G + + TDH +K
Sbjct: 262 LTDEDLLTYD----PNYKVNPPLRTEEDREALIEGLKDGTIDAIATDHAPHAREEKE--- 314
Query: 381 DDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTS 420
+F P G+ G+E + L++ T+V++G + + + +
Sbjct: 315 CEFEAAPFGITGLETALSLLYTTLVKTGLLDLEQLLEKMT 354
|
Length = 423 |
| >gnl|CDD|181632 PRK09060, PRK09060, dihydroorotase; Validated | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 1e-20
Identities = 102/380 (26%), Positives = 170/380 (44%), Gaps = 48/380 (12%)
Query: 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLA 115
++KGGTVVN + AD+ + DG + A+ +V+D G V+PG ID H
Sbjct: 8 ILKGGTVVNPDGEGRADIGIRDGRIAAIGDLSGASAG-EVIDCRGLHVLPGVIDSQVHFR 66
Query: 116 MEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKK---AKNS--CMD 170
G E +D +G AA+ GG T F +P LT EA K A++ C D
Sbjct: 67 EP--GLEHKEDLETGSRAAVLGGVTAV--FEMPNTNPLTTTAEALADKLARARHRMHC-D 121
Query: 171 YGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFM-AYKGSFMINDELLIE-----GFKRC 224
+ F++ T+ D DE+ + + G K FM + G ++ D+ + G +R
Sbjct: 122 FAFYVGGTR-DNA--DELAELERLPGCAGIKVFMGSSTGDLLVEDDEGLRRILRNGRRR- 177
Query: 225 KSLGALAMVHAENGDAVFEGQKRMIE---LGITG-PEGHALSRPPLLEGEATTRAIRLAE 280
A H+E+ + R+ E L + G P H + R AT R +RLA
Sbjct: 178 ------AAFHSED-------EYRLRERKGLRVEGDPSSHPVWRDEEAALLATRRLVRLAR 224
Query: 281 FVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMS 340
++V+HV + + ++ +A + E L L + T A M+
Sbjct: 225 ETGRRIHVLHVSTAEEIDFLADHK---DVATVEVTPHHLTLAAPECYER-LGTLA--QMN 278
Query: 341 PPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLV 400
PPIR + H L + G++ ++G+DH +KA + P+G+ G++ + ++
Sbjct: 279 PPIRDARHRDGLWRGVRQGVVDVLGSDHAPHTLEEKA---KPYPASPSGMTGVQTLVPIM 335
Query: 401 WDTMVESGQISVTDYVRLTS 420
D V +G++S+ +V LTS
Sbjct: 336 LD-HVNAGRLSLERFVDLTS 354
|
Length = 444 |
| >gnl|CDD|178392 PLN02795, PLN02795, allantoinase | Back alignment and domain information |
|---|
Score = 83.3 bits (206), Expect = 3e-17
Identities = 90/375 (24%), Positives = 142/375 (37%), Gaps = 63/375 (16%)
Query: 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGGI 108
S +++ G + A V VE G +V+V VLD VMPG I
Sbjct: 50 SKRVVTPAGVIPGA-------VEVEGGRIVSVTKEEEAPKSQKKPHVLDYGNAVVMPGLI 102
Query: 109 DPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLT----AGFEAYEKKA 164
D H HL G + F +G AA AGG T +D +P+N + E + A
Sbjct: 103 DVHVHL--NEPGRTEWEGFPTGTKAAAAGGITTLVD--MPLNSFPSTTSVETLELKIEAA 158
Query: 165 KNSCM-DYGFHMAITKWDEVVSD------EMEVMVKEKGINSFKFFMAYKGSFMIND--- 214
K D GF W +V + +E ++ + G K FM G IND
Sbjct: 159 KGKLYVDVGF------WGGLVPENAHNASVLEELL-DAGALGLKSFMCPSG---INDFPM 208
Query: 215 ---ELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEA 271
+ G +VHAE V ++ + SRPP E EA
Sbjct: 209 TTATHIKAALPVLAKYGRPLLVHAEVVSPV--ESDSRLDADPRSYSTYLKSRPPSWEQEA 266
Query: 272 ---------TTRAIRLAEFVNTPLYVVHVM-SMDAMEEIAKARKAGQRVIGEPVVSGLVL 321
TR +AE +++VH+ + ++E I +A+ G V E L
Sbjct: 267 IRQLLEVAKDTRPGGVAE--GAHVHIVHLSDAESSLELIKEAKAKGDSVTVETCPHYLAF 324
Query: 322 DDSWLWHSDFVT--AAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFG 379
++ + +Y +PPIR + + + L AL G + ++ +DH K
Sbjct: 325 S------AEEIPDGDTRYKCAPPIRDAANRELLWKALLDGDIDMLSSDHSPSPPDLKLLE 378
Query: 380 IDDFRKIPNGVNGIE 394
+F + G++ ++
Sbjct: 379 EGNFLRAWGGISSLQ 393
|
Length = 505 |
| >gnl|CDD|222250 pfam13594, Amidohydro_5, Amidohydrolase | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 6e-16
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 73 VYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA 132
+ +EDG + A+ + + +V+DA GK+V+PG ID H HL E + +G A
Sbjct: 1 ILIEDGKIAAIGGDDLPDAEAEVIDAEGKYVLPGLIDMHVHLGEE----PGRETLETGAA 56
Query: 133 AALAGGTT 140
AALAGG T
Sbjct: 57 AALAGGVT 64
|
This family of enzymes are a part of a large metal dependent hydrolase superfamily. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are also included. Length = 66 |
| >gnl|CDD|236262 PRK08417, PRK08417, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 2e-15
Identities = 75/360 (20%), Positives = 141/360 (39%), Gaps = 51/360 (14%)
Query: 75 VEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ--- 131
++DG + + ++ ++LDA GK ++P +D + +D S +
Sbjct: 3 IKDGKITEIGSDLK---GEEILDAKGKTLLPALVD---------LNVSLKNDSLSSKNLK 50
Query: 132 ---AAALAGGTT---MHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVS 185
L GG ++ D I+ + E + M + D +S
Sbjct: 51 SLENECLKGGVGSIVLYPDSTPAIDNEIA--LELINSAQRELPMQIFPSIRALDEDGKLS 108
Query: 186 DEMEVMVKEKGINSFKFFMAYKGSFM---INDELLIEGFKRCKSLGALAMVHAENGDAVF 242
+ I + K + ++ LL + K L E D+ F
Sbjct: 109 N----------IATL-LKKGAKALELSSDLDANLLKVIAQYAKMLDVPIFCRCE--DSSF 155
Query: 243 EGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAK 302
+ M + G E P + E + + LA+F + + ++E + K
Sbjct: 156 DDSGVMND-GELSFELGLPGIPSIAETKEVAKMKELAKFYKNKVLFDTLALPRSLELLDK 214
Query: 303 ARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQ 362
+ G++++ E + L+LDDS +F TAAK ++PP+R+ AL AL G +
Sbjct: 215 FKSEGEKLLKEVSIHHLILDDSAC--ENFNTAAK--LNPPLRSKEDRLALLEALKEGKID 270
Query: 363 LVGTDHCAFNSTQK--AFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTS 420
+ + H A ++++K AF F G++ I E L + +V+ G I+ ++ R TS
Sbjct: 271 FLTSLHSAKSNSKKDLAFDEAAF-----GIDSICEYFSLCYTYLVKEGIITWSELSRFTS 325
|
Length = 386 |
| >gnl|CDD|235265 PRK04250, PRK04250, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 1e-13
Identities = 93/375 (24%), Positives = 143/375 (38%), Gaps = 78/375 (20%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
K L+KG V + +E+G + + G +V+ G ++PG ID H H
Sbjct: 5 KFLLKGRIVE-------GGIGIENGRISKISLRDLKGK--EVIKVKGGIILPGLIDVHVH 55
Query: 114 LAMEFMGS--ETIDDFFSGQAAALAGGTTMHIDFV---IPINGSLTAGFEAYEKKAKNSC 168
L +F S ETI+ SG AAL GG T+ D PI T +E + A+
Sbjct: 56 L-RDFEESYKETIE---SGTKAALHGGITLVFDMPNTKPPIMDEKT--YEKRMRIAEKKS 109
Query: 169 -MDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL 227
DY + I E + K F A G + + +
Sbjct: 110 YADYALNFLIAGNCEKAEEIKADFYKI-------FMGASTGGIFSEN--FEVDYA--CAP 158
Query: 228 GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287
G ++ VHAE+ + + E PE RPP E A RA+ + + PL+
Sbjct: 159 GIVS-VHAEDPELIREF-----------PE-----RPPEAEVVAIERALEAGKKLKKPLH 201
Query: 288 VVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMS------P 341
+ H+ + D ++ I K+ P VS V H F+T Y + P
Sbjct: 202 ICHISTKDGLKLILKS--------NLPWVSFEVTP-----HHLFLTRKDYERNPLLKVYP 248
Query: 342 PIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVW 401
P+R+ KAL + + ++ +DH K G G+ G+E + L+
Sbjct: 249 PLRSEEDRKALWENFSK--IPIIASDHAPHTLEDKEAG-------AAGIPGLETEVPLLL 299
Query: 402 DTMVESGQISVTDYV 416
D G IS+ D V
Sbjct: 300 D-AANKGMISLFDIV 313
|
Length = 398 |
| >gnl|CDD|236423 PRK09237, PRK09237, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 3e-12
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 55 ILIKGGTVVN--AHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
+L++GG V++ + D+ +EDG + AV +I+ KV+D +G +V PG ID H
Sbjct: 1 LLLRGGRVIDPANGIDGVIDIAIEDGKIAAVAGDIDGSQAKKVIDLSGLYVSPGWIDLHV 60
Query: 113 H 113
H
Sbjct: 61 H 61
|
Length = 380 |
| >gnl|CDD|234114 TIGR03121, one_C_dehyd_A, formylmethanofuran dehydrogenase subunit A | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 2e-11
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 54 KILIKGGTVV---NAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
+ILIK GTV N ++ D+++ DG +V P KV+DA+GK VM GG+D
Sbjct: 1 EILIKNGTVYDPANGIDGEVMDIFIRDGKIVE--PVSGGTKPAKVIDASGKLVMAGGVDS 58
Query: 111 HTHLA 115
HTH+A
Sbjct: 59 HTHIA 63
|
Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably. Length = 556 |
| >gnl|CDD|181288 PRK08204, PRK08204, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 4e-10
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 53 SKILIKGGTVVNAHHQ----QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGI 108
+ LI+GGTV+ D+ +E + AV P+I D +V+DA G VMPG +
Sbjct: 2 KRTLIRGGTVLTMDPAIGDLPRGDILIEGDRIAAVAPSIE-APDAEVVDARGMIVMPGLV 60
Query: 109 DPHTHL 114
D H H
Sbjct: 61 DTHRHT 66
|
Length = 449 |
| >gnl|CDD|223479 COG0402, SsnA, Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 4e-10
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 52 SSKILIKGGTVV---NAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGI 108
+ +LI+G ++ + D+ +EDG +VA+ N D +V+DA GK V+PG +
Sbjct: 1 MTMLLIRGDLLLTNDPEGRIEDGDLVIEDGKIVAIGANAEGPPDEEVIDAKGKLVLPGFV 60
Query: 109 DPHTHLAMEFM 119
+ HTHL +
Sbjct: 61 NAHTHLDQTLL 71
|
Length = 421 |
| >gnl|CDD|238629 cd01304, FMDH_A, Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 4e-10
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 57 IKGGTVV---NAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
IK GTV N + + D+++ DG +V + KV+DA+GK VM GG+D H+H
Sbjct: 1 IKNGTVYDPLNGINGEKMDIFIRDGKIVES---SSGAKPAKVIDASGKVVMAGGVDMHSH 57
Query: 114 LA 115
+A
Sbjct: 58 IA 59
|
FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen. Length = 541 |
| >gnl|CDD|238634 cd01309, Met_dep_hydrolase_C, Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 3e-09
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 77 DGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAM--EFMGSETIDD 126
DG +VAV I D +V+DA GK V PG ID H+HL + E ET D
Sbjct: 1 DGKIVAVGAEITTPADAEVIDAKGKHVTPGLIDAHSHLGLDEEGGVRETSDA 52
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. Length = 359 |
| >gnl|CDD|238623 cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 6e-09
Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 5/67 (7%)
Query: 55 ILIKGGTVVNAHHQQI---ADVYVEDGIVVAVQPNINVGD--DVKVLDATGKFVMPGGID 109
ILI+ GT+V +++ DV VEDG +VAV P + + +V+DA GK VMPG ++
Sbjct: 1 ILIRNGTIVTTDPRRVLEDGDVLVEDGRIVAVGPALPLPAYPADEVIDAKGKVVMPGLVN 60
Query: 110 PHTHLAM 116
HTHLAM
Sbjct: 61 THTHLAM 67
|
Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD. Length = 411 |
| >gnl|CDD|224150 COG1229, FwdA, Formylmethanofuran dehydrogenase subunit A [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 6e-09
Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 5/66 (7%)
Query: 53 SKILIKGGTV---VNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGID 109
+ILIK G V +N + + D+ V+DG +V + + KV+DA+GK VMPGG+D
Sbjct: 3 MEILIKNGIVYDPLNGINGEKMDICVKDGKIV--EESEVSESKAKVIDASGKLVMPGGVD 60
Query: 110 PHTHLA 115
H+H+A
Sbjct: 61 SHSHVA 66
|
Length = 575 |
| >gnl|CDD|182623 PRK10657, PRK10657, isoaspartyl dipeptidase; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 1e-08
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGD---DVKVLDATGKFVMPGGIDPH 111
L+K V D+ + G ++A+ NIN+ D D++V+DA+GK ++PG ID H
Sbjct: 3 TLLKNAHVYAPEDLGKKDILIAGGKIIAIADNINIPDIVPDIEVIDASGKILVPGFIDQH 62
Query: 112 THLA 115
H+
Sbjct: 63 VHII 66
|
Length = 388 |
| >gnl|CDD|181411 PRK08393, PRK08393, N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 1e-08
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 55 ILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
ILIK G V+ + ++ ADV +E +V V+ NIN D V+DA+G V PG I+ HT
Sbjct: 3 ILIKNGYVIYGENLKVIRADVLIEGNKIVEVKRNINKPAD-TVIDASGSVVSPGFINAHT 61
Query: 113 HLAM 116
H M
Sbjct: 62 HSPM 65
|
Length = 424 |
| >gnl|CDD|180895 PRK07228, PRK07228, N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 3e-08
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 53 SKILIKGGTVVNAHHQ---QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGID 109
ILIK +V + + DV +ED + AV +++ D +DATGK V+PG I
Sbjct: 1 MTILIKNAGIVTMNAKREIVDGDVLIEDDRIAAVGDRLDLEDYDDHIDATGKVVIPGLIQ 60
Query: 110 PHTHL 114
H HL
Sbjct: 61 GHIHL 65
|
Length = 445 |
| >gnl|CDD|238622 cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 4e-08
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 54 KILIKGGTVV--NAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPH 111
++I+ GTVV ADV + DG + A+ P ++ +V+DA G V PG ID H
Sbjct: 1 DLVIRNGTVVDGTGAPPFTADVGIRDGRIAAIGPILSTSAR-EVIDAAGLVVAPGFIDVH 59
Query: 112 TH 113
TH
Sbjct: 60 TH 61
|
Length = 415 |
| >gnl|CDD|224149 COG1228, HutI, Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 6e-08
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 53 SKILIKGGTVVNAHHQQI-ADVYVEDGIVVAV-QPNINVGDDVKVLDATGKFVMPGGIDP 110
+ + G + V +EDG +VAV I++ +V+DA GK V PG ID
Sbjct: 10 AMLATLAGRGLPGLGIIEDGAVLIEDGKIVAVGPEEIDIPAGAEVIDAKGKTVTPGLIDA 69
Query: 111 HTHLAM 116
HTHL
Sbjct: 70 HTHLGF 75
|
Length = 406 |
| >gnl|CDD|179247 PRK01211, PRK01211, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 2e-07
Identities = 68/334 (20%), Positives = 130/334 (38%), Gaps = 53/334 (15%)
Query: 72 DVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131
++ VEDG + +++ + ++ A ++P D H H G +DF +G
Sbjct: 17 EIEVEDGKIKSIKKDAGNIGKKELKGA----ILPAATDIHVHFRTP--GETEKEDFSTGT 70
Query: 132 AAALAGGTTMHIDFVIPINGSLTAGFEAYEKK----AKNSCMDYGFHMAITKWDEVVSDE 187
+A+ GGTT +D +P N + A+ K A + +D+ + T + ++ DE
Sbjct: 71 LSAIFGGTTFIMD--MPNNNIPIKDYNAFSDKLGRVAPKAYVDFSLYSMETGNNALILDE 128
Query: 188 MEVMVKEKGINSFKFFMAYKGSFMINDELLIEG-FKRCKSLGALAMVHAENGDAVFEGQK 246
+ K +M G+ N + G K+ HAE + + + Q
Sbjct: 129 RSI--------GLKVYMG--GTTNTNGTDIEGGEIKKINEANIPVFFHAELSECLRKHQF 178
Query: 247 RMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV-HVMSMDAMEEIAKARK 305
L H L+RP E +A++ + ++ ++ HV S+D + +
Sbjct: 179 ESKNL-----RDHDLARPI----ECEIKAVKYVKNLDLKTKIIAHVSSIDVIGRFLR--- 226
Query: 306 AGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVG 365
E L+L+D + K ++PP+R + L +G ++
Sbjct: 227 -------EVTPHHLLLNDDM----PLGSYGK--VNPPLRDRWTQERLLEEYISGRFDILS 273
Query: 366 TDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHL 399
+DH K +F +G+ G+E R+ L
Sbjct: 274 SDHAPHTEEDKQ----EFEYAKSGIIGVETRVPL 303
|
Length = 409 |
| >gnl|CDD|238434 cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 4e-07
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
++IK ++ + V VEDG +VA+ P + + +++D G++++PG ID H H
Sbjct: 1 LIIKNARILTPGGLEDGAVLVEDGKIVAIGPEDELEEADEIIDLKGQYLVPGFIDIHIHG 60
Query: 115 AMEFMGSETIDDFFSGQAAALAG-GTT 140
+ + A ALA GTT
Sbjct: 61 GGGADFMDGTAEALKTIAEALAKHGTT 87
|
This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling. Length = 374 |
| >gnl|CDD|238621 cd01296, Imidazolone-5PH, Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 5e-07
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 73 VYVEDGIVVAVQP----NINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFF 128
+ + DG + AV P + +DA G+ V PG +D HTHL F G D+F
Sbjct: 1 IAIRDGRIAAVGPAASLPAPGPAAAEEIDAGGRAVTPGLVDCHTHLV--FAGDRV-DEF- 56
Query: 129 SGQAAALAGGTTMHI 143
AA LAG + I
Sbjct: 57 ---AARLAGASYEEI 68
|
In bacteria, the enzyme is part of histidine utilization (hut) operon. Length = 371 |
| >gnl|CDD|223933 COG1001, AdeC, Adenine deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 9e-07
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 55 ILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
+++K G +V+ +I D+ + G +V V + +V+DA G++++PG ID H
Sbjct: 26 LVLKNGRIVDVVTGEIYKGDIAIAGGRIVGV-IGEYRAEATEVIDAAGRYIVPGFIDAHL 84
Query: 113 HLAMEFMGSETIDDFFSGQAAALAGGTT 140
H+ + A L GTT
Sbjct: 85 HIESSMLTPSEFA------RAVLPHGTT 106
|
Length = 584 |
| >gnl|CDD|180363 PRK06038, PRK06038, N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 9e-07
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 55 ILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
I+IK V+ + V +EDG + V GD V+DA G VMPG ++ HT
Sbjct: 4 IIIKNAYVLTMDAGDLKKGSVVIEDGTITEVS-ESTPGDADTVIDAKGSVVMPGLVNTHT 62
Query: 113 HLAM 116
H AM
Sbjct: 63 HAAM 66
|
Length = 430 |
| >gnl|CDD|236478 PRK09356, PRK09356, imidazolonepropionase; Validated | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 1e-06
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 71 ADVYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPHTHL 114
+ +EDG +V V P ++ +V+DA GK V PG ID HTHL
Sbjct: 29 GAIAIEDGKIVWVGPEADLPAAYAAEVIDAGGKLVTPGLIDCHTHL 74
|
Length = 406 |
| >gnl|CDD|224490 COG1574, COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 55 ILIKGGTV--VNAHHQQIADVYVEDGIVVAVQPN--IN--VGDDVKVLDATGKFVMPGGI 108
+++ G + ++ V ++DG +VAV + + G +V+D GKFV+PG +
Sbjct: 7 LILHNGRIYTMDEARPTAEAVAIKDGRIVAVGSDAELKALAGPATEVIDLKGKFVLPGFV 66
Query: 109 DPHTHLAM 116
D H HL
Sbjct: 67 DAHLHLIS 74
|
Length = 535 |
| >gnl|CDD|238617 cd01292, metallo-dependent_hydrolases, Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 3e-06
Identities = 48/300 (16%), Positives = 78/300 (26%), Gaps = 81/300 (27%)
Query: 108 IDPHTHLAM----------------EFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING 151
ID H HL E + +D A LAGG T +D
Sbjct: 2 IDTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDM--GSTP 59
Query: 152 SLTAGFEAYEKKAKNS----------CMDYGFHMAITKWDEVVSDEMEV-MVKEKGINSF 200
T A E A+ + + A D + E G
Sbjct: 60 PPTTTKAAIEAVAEAARASAGIRVVLGLGIPGVPAAVDEDAEALLLELLRRGLELGAVGL 119
Query: 201 KFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHA 260
K Y + ++DE L + + LG ++HA + ++ L
Sbjct: 120 KLAGPY-TATGLSDESLRRVLEEARKLGLPVVIHAGELPDPTRALEDLVALL-------- 170
Query: 261 LSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLV 320
+ + + HV +D E + ++AG + P
Sbjct: 171 --------------------RLGGRVVIGHVSHLDP-ELLELLKEAGVSLEVCP------ 203
Query: 321 LDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGI 380
+ R +AL+ L GI +GTD +
Sbjct: 204 ----LSNYLLG------------RDGEGAEALRRLLELGIRVTLGTDGPPHPLGTDLLAL 247
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others. Length = 275 |
| >gnl|CDD|238618 cd01293, Bact_CD, Bacterial cytosine deaminase and related metal-dependent hydrolases | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 4e-06
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 70 IADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
+ D+ +EDG + A+ P + V D + +DA G+ V+P +DPH HL
Sbjct: 14 LVDIAIEDGRIAAIGPALAVPPDAEEVDAKGRLVLPAFVDPHIHL 58
|
Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric. Length = 398 |
| >gnl|CDD|181059 PRK07627, PRK07627, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 5e-06
Identities = 34/90 (37%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 54 KILIKGGTVVN--AHHQQIADVYVEDGIVVAV-QPNINVGDDVKVLDATGKFVMPGGIDP 110
KI IKGG +++ A + AD+YV G + A+ Q D K +DA+G V PG +D
Sbjct: 2 KIHIKGGRLIDPAAGTDRQADLYVAAGKIAAIGQAPAGFNAD-KTIDASGLIVCPGLVDL 60
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTT 140
L G E S AAA+AGG T
Sbjct: 61 SARLREP--GYEYKATLESEMAAAVAGGVT 88
|
Length = 425 |
| >gnl|CDD|221936 pfam13147, Amidohydro_4, Amidohydrolase | Back alignment and domain information |
|---|
Score = 47.9 bits (113), Expect = 5e-06
Identities = 46/284 (16%), Positives = 82/284 (28%), Gaps = 39/284 (13%)
Query: 97 DATGKFVMPGGIDPHTH---LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSL 153
DA G+ V+PG +D H H L G + +G AA G T + L
Sbjct: 1 DAKGRLVLPGLVDLHVHGRPLDKSEDGGPYRAEAEAGLAALAGAGVTSALLDGGWEPELL 60
Query: 154 T-AGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI 212
T A+ + E++ E + ++ A
Sbjct: 61 TRLLVRVLVDGLIGLGNLGATLEALKRLVELLEAEGVALPLASVLDG-PGLEALLREAKK 119
Query: 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEAT 272
+L+ G + + G +
Sbjct: 120 AGLILLVGHAPADLGDGAVEKGLDALFLLALGHEVA------------------------ 155
Query: 273 TRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFV 332
+ LAE ++ + + A + + + A GL + L D
Sbjct: 156 -EDLHLAEILDPGAGLGLHVIAAAADLLLEGLVAAHAG-------GLAVVPLELLLRDAA 207
Query: 333 TA-AKYVMSPPIRASG-HNKALQAALATGILQLVGTDHCAFNST 374
A + + PP+R +AL+ LA G+ +G+DH +
Sbjct: 208 AAGVAFKVLPPLRLRERDREALRELLAAGVPVALGSDHAPDSPA 251
|
This family of enzymes are a part of a large metal dependent hydrolase superfamily. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are also included. Length = 304 |
| >gnl|CDD|238632 cd01307, Met_dep_hydrolase_B, Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 5e-06
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 72 DVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
DV +E+G + AV + +++DA G +V PG ID H H
Sbjct: 1 DVAIENGKIAAVGAALAAPAATQIVDAGGCYVSPGWIDLHVH 42
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. Length = 338 |
| >gnl|CDD|181631 PRK09059, PRK09059, dihydroorotase; Validated | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 72/315 (22%), Positives = 131/315 (41%), Gaps = 40/315 (12%)
Query: 70 IADVYVEDGIVVAVQPNI---NVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDD 126
I V +EDG++VA + +++D GK V PG +D + G+E +
Sbjct: 22 IGTVLIEDGVIVAAGKGAGNQGAPEGAEIVDCAGKAVAPGLVDARVFVGEP--GAEHRET 79
Query: 127 FFSGQAAALAGGTT---MHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM-AITKWDE 182
S AA AGG T M D I+ F ++ A+++ + AITK
Sbjct: 80 IASASRAAAAGGVTSIIMMPDTDPVIDDVALVEF--VKRTARDTAIVNIHPAAAITK--G 135
Query: 183 VVSDEM-EV-MVKEKGINSFKFFMAYKG-SFMINDELLIEGFKRCKSLGALAMVHAENGD 239
+ +EM E +++ G +F G + N +++ + A+ + D
Sbjct: 136 LAGEEMTEFGLLRAAGAVAF-----TDGRRSVANTQVMRRALTYARDFDAVIVHETR--D 188
Query: 240 AVFEGQKRMIE------LGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS 293
G M E LG++G A P LE R +RLA + +
Sbjct: 189 PDLGGNGVMNEGLFASWLGLSGIPREAEVIP--LE-----RDLRLAALTRGRYHAAQISC 241
Query: 294 MDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQ 353
++ E + +A+ G +V ++ L L+++ + ++ T K +SPP+R A+
Sbjct: 242 AESAEALRRAKDRGLKVTAGVSINHLSLNENDI--GEYRTFFK--LSPPLRTEDDRVAMV 297
Query: 354 AALATGILQLVGTDH 368
A+A+G + ++ + H
Sbjct: 298 EAVASGTIDIIVSSH 312
|
Length = 429 |
| >gnl|CDD|236002 PRK07369, PRK07369, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 20/166 (12%)
Query: 249 IELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMD---AMEEIAKARK 305
+ LG+ G P E A + L + TP VH+M + ++E IA+A+
Sbjct: 200 LRLGLPG-------DPASAETTALAALLELVAAIGTP---VHLMRISTARSVELIAQAKA 249
Query: 306 AGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVG 365
G + L+LD L D + PP+ +AL + TG++ +
Sbjct: 250 RGLPITASTTWMHLLLDTEALASYD----PNLRLDPPLGNPSDRQALIEGVRTGVIDAIA 305
Query: 366 TDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQIS 411
DH + +K F + P G G+E + L+W +VE+G++S
Sbjct: 306 IDHAPYTYEEKTVA---FAEAPPGAIGLELALPLLWQNLVETGELS 348
|
Length = 418 |
| >gnl|CDD|238625 cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 72 DVYVEDGIVVAV----QPNINVGDDVKVLDATGKFVMPGGIDPHTHLAM 116
V V DG +VAV + G +V+D GK V+PG ID H+HL +
Sbjct: 1 AVAVRDGRIVAVGSDAEAKALKGPATEVIDLKGKTVLPGFIDSHSHLLL 49
|
YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling. Length = 479 |
| >gnl|CDD|236369 PRK09061, PRK09061, D-glutamate deacylase; Validated | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 55 ILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
++I+ G VV+ + DV ++ G + AV GD + +DATG V PG ID H
Sbjct: 21 LVIRNGRVVDPETGLDAVRDVGIKGGKIAAVGTAAIEGD--RTIDATGLVVAPGFIDLHA 78
Query: 113 H 113
H
Sbjct: 79 H 79
|
Length = 509 |
| >gnl|CDD|236002 PRK07369, PRK07369, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 69 QIADVYVEDGIVVAVQPNI-NVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDF 127
+IADV +EDG + A++P+I + D +++DA+G + PG +D ++H + E G E +
Sbjct: 20 RIADVLIEDGKIQAIEPHIDPIPPDTQIIDASGLILGPGLVDLYSH-SGE-PGFEERETL 77
Query: 128 FSGQAAALAGGTT 140
S AAA AGG T
Sbjct: 78 ASLAAAAAAGGFT 90
|
Length = 418 |
| >gnl|CDD|235963 PRK07203, PRK07203, putative chlorohydrolase/aminohydrolase; Validated | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 9e-05
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 55 ILIKGGTVVNAHHQQI----ADVYVEDGIVVAVQPNINVGD---DVKVLDATGKFVMPGG 107
+LI GT + + + +E ++V + + D + +DA GK +MPG
Sbjct: 2 LLIGNGTAITRDPAKPVIEDGAIAIEGNVIVEIGTTDELKAKYPDAEFIDAKGKLIMPGL 61
Query: 108 IDPHTHL 114
I+ H H+
Sbjct: 62 INSHNHI 68
|
Length = 442 |
| >gnl|CDD|238624 cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 9e-05
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 10/57 (17%)
Query: 95 VLDATGKFVMPGGIDPHTHLAMEFMGSETIDDF----------FSGQAAALAGGTTM 141
V+D GK +MPG ID HTHL + +AA AG TT+
Sbjct: 3 VIDLGGKTLMPGLIDAHTHLGSDPGDLPLDLALPVEYRTIRATRQARAALRAGFTTV 59
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. Length = 342 |
| >gnl|CDD|130246 TIGR01178, ade, adenine deaminase | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 9e-05
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 55 ILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
I+IK +++ ++ +I D+ + +G + V + VKV+DA G++ +PG ID H
Sbjct: 2 IVIKNAKIIDVYNGEIIPGDIAIANGHIAGVGKY----NGVKVIDALGEYAVPGFIDAHI 57
Query: 113 HLAMEFM 119
H+ +
Sbjct: 58 HIESSML 64
|
The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected [Purines, pyrimidines, nucleosides, and nucleotides, Salvage of nucleosides and nucleotides]. Length = 552 |
| >gnl|CDD|224733 COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 54 KILIKGGTVVNAHHQQIAD---VYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
+K G + H + D V +EDG + AV P + D +++D G ++PG ID
Sbjct: 1 MYALKNGRIFTGH--GVLDGGAVVIEDGKIEAVVP-AELPADAEIIDLKGALLVPGFIDL 57
Query: 111 HTH-----LAMEFMGSETID 125
H H M+ ET++
Sbjct: 58 HIHGGGGADFMDAGSVETLE 77
|
Length = 380 |
| >gnl|CDD|226473 COG3964, COG3964, Predicted amidohydrolase [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 55 ILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
IL+ GG +++ +I ++ + +G + A + + +++DA G V PG ID H
Sbjct: 6 ILLTGGRLIDPARGIDEITNIAIINGKIAAAD-DYPAPAETQIIDADGCIVSPGLIDLHV 64
Query: 113 H 113
H
Sbjct: 65 H 65
|
Length = 386 |
| >gnl|CDD|237967 PRK15446, PRK15446, phosphonate metabolism protein PhnM; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 3e-04
Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPH 111
++++ +V + +EDG + A+ P + +DA G +++PG +D H
Sbjct: 1 MMEMILSNARLVLPDEVVDGSLLIEDGRIAAIDPGASALPGA--IDAEGDYLLPGLVDLH 58
Query: 112 T-HLAMEFM 119
T +L
Sbjct: 59 TDNLEKHLA 67
|
Length = 383 |
| >gnl|CDD|238633 cd01308, Isoaspartyl-dipeptidase, Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPHTH 113
LIK V + D+ + G ++A++ +N+ ++V V+D GK ++PG ID H H
Sbjct: 3 LIKNAEVYAPEYLGKKDILIAGGKILAIEDQLNLPGYENVTVVDLHGKILVPGFIDQHVH 62
Query: 114 LA 115
+
Sbjct: 63 II 64
|
Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides. Length = 387 |
| >gnl|CDD|216825 pfam01979, Amidohydro_1, Amidohydrolase family | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 5e-04
Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 8/96 (8%)
Query: 102 FVMPGGIDPHTHLAMEFMGSETI-DDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFE-- 158
V+PG ID H HL + E + +G A L GTT +D N S+ E
Sbjct: 1 IVLPGLIDAHVHLESPLLRGEDSYEAILTGAKAMLRSGTTTVLDTPTSANTSIPLRKEIM 60
Query: 159 -----AYEKKAKNSCMDYGFHMAITKWDEVVSDEME 189
A + + + G + EVV D
Sbjct: 61 EGLAAAPKLEPNVELLLKGSVGGRAELGEVVIDGAG 96
|
This family of enzymes are a a large metal dependent hydrolase superfamily. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are also included. Length = 307 |
| >gnl|CDD|236184 PRK08203, PRK08203, hydroxydechloroatrazine ethylaminohydrolase; Reviewed | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.001
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 55 ILIKGGTVV---NAHHQQIAD--VYVEDGIVVAVQPN-INVGDDVKVLDATGKFVMPGGI 108
+ IK + +A ++IAD + VE G +V V P +V DA G V PG +
Sbjct: 3 LWIKNPLAIVTMDAARREIADGGLVVEGGRIVEVGPGGALPQPADEVFDARGHVVTPGLV 62
Query: 109 DPHTHL 114
+ H H
Sbjct: 63 NTHHHF 68
|
Length = 451 |
| >gnl|CDD|181039 PRK07572, PRK07572, cytosine deaminase; Validated | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
++++ + + + D+ + G + AV+P + + + +DA G+ V P +DPH H+
Sbjct: 4 LIVRNANLPDG--RTGIDIGIAGGRIAAVEPGLQ-AEAAEEIDAAGRLVSPPFVDPHFHM 60
|
Length = 426 |
| >gnl|CDD|180548 PRK06380, PRK06380, metal-dependent hydrolase; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.001
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 55 ILIKGGTVVNAHHQQ---IADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPH 111
ILIK +V + ++ +VY+E +V V ++N D ++DATGK VMPG I+ H
Sbjct: 3 ILIKNAWIVTQNEKREILQGNVYIEGNKIVYVG-DVNEEADY-IIDATGKVVMPGLINTH 60
Query: 112 THLAM 116
H+ M
Sbjct: 61 AHVGM 65
|
Length = 418 |
| >gnl|CDD|180337 PRK05985, PRK05985, cytosine deaminase; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 71 ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG 120
D+ + DG + A+ P + +V D G +PG +D H HL F G
Sbjct: 17 VDILIRDGRIAAIGPALAAPPGAEVEDGGGALALPGLVDGHIHLDKTFWG 66
|
Length = 391 |
| >gnl|CDD|236062 PRK07583, PRK07583, cytosine deaminase-like protein; Validated | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 71 ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
D+ + DG + A+ P D++ +D G+ V P +D HTHL
Sbjct: 41 VDIEIADGKIAAILPAGGAPDELPAVDLKGRMVWPCFVDMHTHL 84
|
Length = 438 |
| >gnl|CDD|132012 TIGR02967, guan_deamin, guanine deaminase | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.002
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 66 HHQQIADVYVEDGIVVAVQPNINV----GDDVKVLDATGKFVMPGGIDPHTHLA-MEFMG 120
+ + + VE+G +VAV + V++ D G +MPG ID H H E +
Sbjct: 2 EYFEDGLLVVENGRIVAVGDYAELKETLPAGVEIDDYRGHLIMPGFIDTHIHYPQTEMIA 61
Query: 121 S 121
S
Sbjct: 62 S 62
|
This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model [Purines, pyrimidines, nucleosides, and nucleotides, Other]. Length = 401 |
| >gnl|CDD|218322 pfam04909, Amidohydro_2, Amidohydrolase | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.002
Identities = 28/153 (18%), Positives = 46/153 (30%), Gaps = 9/153 (5%)
Query: 108 IDPHTHLAMEF--------MGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEA 159
ID H HL M D + L G + + + + S
Sbjct: 1 IDAHAHLPGGSIPDPRLPLMDRRGYDPRDASPEDYLVLGAALGVARAVIVAASCRGANNR 60
Query: 160 YEKKAKNSCMDYGFHMAITKWD-EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLI 218
+A + A+ D E + E+E + E G + G +++ L
Sbjct: 61 VLAEALKRPGRFVGGAALPPPDPEDAAAELERRLAELGFRGVRLNPHPGGGPLLDPRLDD 120
Query: 219 EGFKRCKSLGALAMVHAENGDAVFEGQKRMIEL 251
F+ LG +H GDA + L
Sbjct: 121 PIFEALAELGLPVDLHTGFGDAGEDLDAAQPLL 153
|
These proteins are amidohydrolases that are related to pfam01979. Length = 272 |
| >gnl|CDD|183497 PRK12394, PRK12394, putative metallo-dependent hydrolase; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 18/113 (15%)
Query: 55 ILIKGGTVVN--AHHQQIADVYVEDGIVVAVQPNINVGD--DVKVLDATGKFVMPGGIDP 110
ILI G +++ + +I ++ + + I+V + +++ A G V PG ID
Sbjct: 5 ILITNGHIIDPARNINEINNLRIINDIIV---DADKYPVASETRIIHADGCIVTPGLIDY 61
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSL-TAGFEAYEK 162
H H+ + G+E G T +D GS TA F+A+ +
Sbjct: 62 HAHVF--YDGTEG---GVRPDMYMPPNGVTTVVD-----AGSAGTANFDAFYR 104
|
Length = 379 |
| >gnl|CDD|234738 PRK00369, pyrC, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 71/331 (21%), Positives = 118/331 (35%), Gaps = 72/331 (21%)
Query: 100 GKFVMPGGIDPHTHL-AMEFMGSETIDDFFSGQAAALAGGTTMHIDF---VIPING--SL 153
G ++PG ID H HL ++ E + SG + A GG T+ D + P+N ++
Sbjct: 42 GTLILPGAIDLHVHLRGLKLSYKEDV---ASGTSEAAYGGVTLVADMPNTIPPLNTPEAI 98
Query: 154 TAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMIN 213
T E ++ +DY + +TK E V D++ I +K F
Sbjct: 99 TEKLAELEYYSR---VDYFVYSGVTKDPEKV-DKL-------PIAGYKIFP--------E 139
Query: 214 DELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATT 273
D E F+ L ++H E A+ +K E AL ++
Sbjct: 140 DLEREETFRVLLKSRKLKILHPEVPLALKSNRKLRRNCWY---EIAALY---YVKDYQN- 192
Query: 274 RAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVT 333
VH+ + A++ G V P H V
Sbjct: 193 ---------------VHITHASNPRTVRLAKELGFTVDITP-------------HHLLVN 224
Query: 334 AAKYVMS---PPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGV 390
K ++ PPIR L AL+ + + +DH +S +K + + P G+
Sbjct: 225 GEKDCLTKVNPPIRDINERLWLLQALSE--VDAIASDHAPHSSFEK---LQPYEVCPPGI 279
Query: 391 NGIEERMHLVWDTMVESGQISVTDYVRLTST 421
+ ++ T+V G +S+ V L ST
Sbjct: 280 AALSFTPPFIY-TLVSKGILSIDRAVELIST 309
|
Length = 392 |
| >gnl|CDD|233321 TIGR01224, hutI, imidazolonepropionase | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.003
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 73 VYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSG 130
+ + G +V + + + +++D G V PG +DPHTHL F G +++F
Sbjct: 6 ILIHGGKIVWIGQLAALPGEEATEIIDCGGGLVTPGLVDPHTHLV--FAGDR-VNEF--- 59
Query: 131 QAAALAGGTTMHI 143
L G + + I
Sbjct: 60 -EMKLQGASYLEI 71
|
This enzyme catalyzes the third step in histidine degradation [Energy metabolism, Amino acids and amines]. Length = 377 |
| >gnl|CDD|226179 COG3653, COG3653, N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.003
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 55 ILIKGGTVVNA--HHQQIADVYVEDGIVVAVQPNINVG-DDVKVLDATGKFVMPGGIDPH 111
++I+ G + + + DV + DG++ AV G + +DA G+ V PG ID H
Sbjct: 8 VVIRDGLIFDGTGNPPFTTDVGIRDGVIAAVAKGALDGTGCPEEVDAAGRIVAPGFIDVH 67
Query: 112 THLAMEFM 119
TH E +
Sbjct: 68 THYDAEVL 75
|
Length = 579 |
| >gnl|CDD|132622 TIGR03583, EF_0837, probable amidohydrolase EF_0837/AHA_3915 | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.003
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATG-KFVMPGGIDPHTH 113
+LIK G VN D+ +EDG + AV I + +D G +V G ID HTH
Sbjct: 3 LLIKNGRTVNG---TPVDIAIEDGKIAAVGTTITGSAK-QTIDLEGETYVSAGWIDDHTH 58
|
Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown [Hypothetical proteins, Conserved]. Length = 365 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 427 | |||
| PLN02942 | 486 | dihydropyrimidinase | 100.0 | |
| COG0044 | 430 | PyrC Dihydroorotase and related cyclic amidohydrol | 100.0 | |
| KOG2584 | 522 | consensus Dihydroorotase and related enzymes [Nucl | 100.0 | |
| PLN02795 | 505 | allantoinase | 100.0 | |
| PRK07369 | 418 | dihydroorotase; Provisional | 100.0 | |
| PRK13404 | 477 | dihydropyrimidinase; Provisional | 100.0 | |
| PRK08323 | 459 | phenylhydantoinase; Validated | 100.0 | |
| PRK07627 | 425 | dihydroorotase; Provisional | 100.0 | |
| cd01314 | 447 | D-HYD D-hydantoinases (D-HYD) also called dihydrop | 100.0 | |
| TIGR02033 | 454 | D-hydantoinase D-hydantoinase. This model represen | 100.0 | |
| PRK09059 | 429 | dihydroorotase; Validated | 100.0 | |
| PRK08417 | 386 | dihydroorotase; Provisional | 100.0 | |
| PRK06189 | 451 | allantoinase; Provisional | 100.0 | |
| PRK08044 | 449 | allantoinase; Provisional | 100.0 | |
| TIGR03178 | 443 | allantoinase allantoinase. This enzyme carries out | 100.0 | |
| cd01315 | 447 | L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinas | 100.0 | |
| PRK02382 | 443 | dihydroorotase; Provisional | 100.0 | |
| PRK09060 | 444 | dihydroorotase; Validated | 100.0 | |
| PRK07575 | 438 | dihydroorotase; Provisional | 100.0 | |
| TIGR00857 | 411 | pyrC_multi dihydroorotase, multifunctional complex | 100.0 | |
| PRK09357 | 423 | pyrC dihydroorotase; Validated | 100.0 | |
| PRK01211 | 409 | dihydroorotase; Provisional | 100.0 | |
| PRK09236 | 444 | dihydroorotase; Reviewed | 100.0 | |
| PRK04250 | 398 | dihydroorotase; Provisional | 100.0 | |
| PRK00369 | 392 | pyrC dihydroorotase; Provisional | 100.0 | |
| cd01318 | 361 | DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; | 100.0 | |
| cd01317 | 374 | DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; | 100.0 | |
| cd01302 | 337 | Cyclic_amidohydrolases Cyclic amidohydrolases, inc | 100.0 | |
| cd01316 | 344 | CAD_DHOase The eukaryotic CAD protein is a trifunc | 100.0 | |
| cd01294 | 335 | DHOase Dihydroorotase (DHOase) catalyzes the rever | 100.0 | |
| PRK09061 | 509 | D-glutamate deacylase; Validated | 100.0 | |
| cd01297 | 415 | D-aminoacylase D-aminoacylases (N-acyl-D-Amino aci | 100.0 | |
| TIGR00856 | 341 | pyrC_dimer dihydroorotase, homodimeric type. This | 100.0 | |
| PLN02599 | 364 | dihydroorotase | 100.0 | |
| PRK05451 | 345 | dihydroorotase; Provisional | 100.0 | |
| PRK15446 | 383 | phosphonate metabolism protein PhnM; Provisional | 100.0 | |
| TIGR02318 | 376 | phosphono_phnM phosphonate metabolism protein PhnM | 99.97 | |
| PRK15493 | 435 | 5-methylthioadenosine/S-adenosylhomocysteine deami | 99.97 | |
| PRK06687 | 419 | chlorohydrolase; Validated | 99.97 | |
| PRK07228 | 445 | N-ethylammeline chlorohydrolase; Provisional | 99.97 | |
| cd01298 | 411 | ATZ_TRZ_like TRZ/ATZ family contains enzymes from | 99.97 | |
| PRK08203 | 451 | hydroxydechloroatrazine ethylaminohydrolase; Revie | 99.96 | |
| PRK09045 | 443 | N-ethylammeline chlorohydrolase; Provisional | 99.96 | |
| PRK12394 | 379 | putative metallo-dependent hydrolase; Provisional | 99.96 | |
| PRK06380 | 418 | metal-dependent hydrolase; Provisional | 99.95 | |
| PRK07203 | 442 | putative chlorohydrolase/aminohydrolase; Validated | 99.95 | |
| PRK09228 | 433 | guanine deaminase; Provisional | 99.95 | |
| TIGR02967 | 401 | guan_deamin guanine deaminase. This model describe | 99.95 | |
| PRK12393 | 457 | amidohydrolase; Provisional | 99.95 | |
| TIGR03314 | 441 | Se_ssnA putative selenium metabolism protein SsnA. | 99.95 | |
| PRK06038 | 430 | N-ethylammeline chlorohydrolase; Provisional | 99.95 | |
| PRK08204 | 449 | hypothetical protein; Provisional | 99.95 | |
| cd01303 | 429 | GDEase Guanine deaminase (GDEase). Guanine deamina | 99.95 | |
| PRK10657 | 388 | isoaspartyl dipeptidase; Provisional | 99.95 | |
| PRK06151 | 488 | N-ethylammeline chlorohydrolase; Provisional | 99.95 | |
| PRK08393 | 424 | N-ethylammeline chlorohydrolase; Provisional | 99.94 | |
| COG1574 | 535 | Predicted metal-dependent hydrolase with the TIM-b | 99.94 | |
| PRK14085 | 382 | imidazolonepropionase; Provisional | 99.94 | |
| TIGR01975 | 389 | isoAsp_dipep isoaspartyl dipeptidase IadA. The L-i | 99.94 | |
| cd01293 | 398 | Bact_CD Bacterial cytosine deaminase and related m | 99.94 | |
| cd01308 | 387 | Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hy | 99.93 | |
| PRK08418 | 408 | chlorohydrolase; Provisional | 99.93 | |
| COG0402 | 421 | SsnA Cytosine deaminase and related metal-dependen | 99.93 | |
| cd01313 | 418 | Met_dep_hydrolase_E Metallo-dependent hydrolases, | 99.93 | |
| COG3964 | 386 | Predicted amidohydrolase [General function predict | 99.93 | |
| PRK09356 | 406 | imidazolonepropionase; Validated | 99.92 | |
| cd01312 | 381 | Met_dep_hydrolase_D Metallo-dependent hydrolases, | 99.92 | |
| PRK07213 | 375 | chlorohydrolase; Provisional | 99.92 | |
| PRK05985 | 391 | cytosine deaminase; Provisional | 99.92 | |
| TIGR01178 | 552 | ade adenine deaminase. The family described by thi | 99.92 | |
| PRK13206 | 573 | ureC urease subunit alpha; Reviewed | 99.92 | |
| TIGR02022 | 455 | hutF formiminoglutamate deiminase. In some species | 99.91 | |
| PRK07572 | 426 | cytosine deaminase; Validated | 99.91 | |
| PRK13207 | 568 | ureC urease subunit alpha; Reviewed | 99.91 | |
| PRK13308 | 569 | ureC urease subunit alpha; Reviewed | 99.91 | |
| PRK09230 | 426 | cytosine deaminase; Provisional | 99.91 | |
| PRK09229 | 456 | N-formimino-L-glutamate deiminase; Validated | 99.91 | |
| cd01296 | 371 | Imidazolone-5PH Imidazolonepropionase/imidazolone- | 99.9 | |
| PRK13309 | 572 | ureC urease subunit alpha; Reviewed | 99.9 | |
| PRK07583 | 438 | cytosine deaminase-like protein; Validated | 99.9 | |
| PRK09237 | 380 | dihydroorotase; Provisional | 99.9 | |
| TIGR01224 | 377 | hutI imidazolonepropionase. This enzyme catalyzes | 99.9 | |
| PRK13985 | 568 | ureB urease subunit beta; Provisional | 99.9 | |
| cd00375 | 567 | Urease_alpha Urease alpha-subunit; Urease is a nic | 99.9 | |
| cd01307 | 338 | Met_dep_hydrolase_B Metallo-dependent hydrolases, | 99.89 | |
| cd01300 | 479 | YtcJ_like YtcJ_like metal dependent amidohydrolase | 99.89 | |
| COG1228 | 406 | HutI Imidazolonepropionase and related amidohydrol | 99.89 | |
| PRK10027 | 588 | cryptic adenine deaminase; Provisional | 99.89 | |
| cd01299 | 342 | Met_dep_hydrolase_A Metallo-dependent hydrolases, | 99.89 | |
| COG1001 | 584 | AdeC Adenine deaminase [Nucleotide transport and m | 99.88 | |
| PLN02303 | 837 | urease | 99.87 | |
| PRK06846 | 410 | putative deaminase; Validated | 99.86 | |
| cd00854 | 374 | NagA N-acetylglucosamine-6-phosphate deacetylase, | 99.86 | |
| TIGR00221 | 380 | nagA N-acetylglucosamine-6-phosphate deacetylase. | 99.85 | |
| TIGR01792 | 567 | urease_alph urease, alpha subunit. This model desc | 99.85 | |
| TIGR03583 | 365 | EF_0837 probable amidohydrolase EF_0837/AHA_3915. | 99.84 | |
| PRK11170 | 382 | nagA N-acetylglucosamine-6-phosphate deacetylase; | 99.84 | |
| COG3454 | 377 | Metal-dependent hydrolase involved in phosphonate | 99.83 | |
| KOG3968 | 439 | consensus Atrazine chlorohydrolase/guanine deamina | 99.83 | |
| COG1820 | 380 | NagA N-acetylglucosamine-6-phosphate deacetylase [ | 99.75 | |
| cd01295 | 422 | AdeC Adenine deaminase (AdeC) directly deaminates | 99.75 | |
| cd01305 | 263 | archeal_chlorohydrolases Predicted chlorohydrolase | 99.74 | |
| cd01304 | 541 | FMDH_A Formylmethanofuran dehydrogenase (FMDH) sub | 99.72 | |
| cd01309 | 359 | Met_dep_hydrolase_C Metallo-dependent hydrolases, | 99.72 | |
| PF13147 | 304 | Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2 | 99.69 | |
| TIGR03121 | 556 | one_C_dehyd_A formylmethanofuran dehydrogenase sub | 99.67 | |
| cd01292 | 275 | metallo-dependent_hydrolases Superfamily of metall | 99.65 | |
| PF13594 | 68 | Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1 | 99.61 | |
| COG0418 | 344 | PyrC Dihydroorotase [Nucleotide transport and meta | 99.58 | |
| COG3653 | 579 | N-acyl-D-aspartate/D-glutamate deacylase [Secondar | 99.56 | |
| cd01306 | 325 | PhnM PhnM is believed to be a subunit of the membr | 99.55 | |
| PRK06886 | 329 | hypothetical protein; Validated | 99.5 | |
| COG0804 | 568 | UreC Urea amidohydrolase (urease) alpha subunit [A | 99.49 | |
| KOG2902 | 344 | consensus Dihydroorotase [Nucleotide transport and | 99.36 | |
| PF01979 | 333 | Amidohydro_1: Amidohydrolase family; InterPro: IPR | 99.35 | |
| PF07969 | 404 | Amidohydro_3: Amidohydrolase family; InterPro: IPR | 99.28 | |
| cd00530 | 293 | PTE Phosphotriesterase (PTE) catalyzes the hydroly | 99.09 | |
| cd01310 | 251 | TatD_DNAse TatD like proteins; E.coli TatD is a cy | 99.05 | |
| COG1229 | 575 | FwdA Formylmethanofuran dehydrogenase subunit A [E | 99.0 | |
| TIGR00010 | 252 | hydrolase, TatD family. Several genomes have multi | 98.95 | |
| PRK10812 | 265 | putative DNAse; Provisional | 98.83 | |
| PRK09875 | 292 | putative hydrolase; Provisional | 98.82 | |
| PF12890 | 142 | DHOase: Dihydro-orotase-like; InterPro: IPR024403 | 98.81 | |
| cd01320 | 325 | ADA Adenosine deaminase (ADA) is a monomeric zinc | 98.78 | |
| TIGR01430 | 324 | aden_deam adenosine deaminase. This family include | 98.78 | |
| COG0084 | 256 | TatD Mg-dependent DNase [DNA replication, recombin | 98.6 | |
| PRK11449 | 258 | putative deoxyribonuclease YjjV; Provisional | 98.51 | |
| PRK10425 | 258 | DNase TatD; Provisional | 98.5 | |
| PF01026 | 255 | TatD_DNase: TatD related DNase The Pfam entry find | 98.49 | |
| PRK09358 | 340 | adenosine deaminase; Provisional | 98.47 | |
| PF02126 | 308 | PTE: Phosphotriesterase family; InterPro: IPR00155 | 98.42 | |
| KOG3892 | 407 | consensus N-acetyl-glucosamine-6-phosphate deacety | 98.16 | |
| COG1735 | 316 | Php Predicted metal-dependent hydrolase with the T | 97.98 | |
| cd01311 | 263 | PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) | 97.84 | |
| COG1099 | 254 | Predicted metal-dependent hydrolases with the TIM- | 97.83 | |
| cd01321 | 345 | ADGF Adenosine deaminase-related growth factors (A | 97.21 | |
| PTZ00124 | 362 | adenosine deaminase; Provisional | 97.05 | |
| cd00443 | 305 | ADA_AMPD Adenosine/AMP deaminase. Adenosine deamin | 96.8 | |
| PF00449 | 121 | Urease_alpha: Urease alpha-subunit, N-terminal dom | 96.61 | |
| PF04909 | 273 | Amidohydro_2: Amidohydrolase; InterPro: IPR006992 | 96.32 | |
| PF00962 | 331 | A_deaminase: Adenosine/AMP deaminase immunodeficie | 95.84 | |
| COG2159 | 293 | Predicted metal-dependent hydrolase of the TIM-bar | 94.81 | |
| COG1816 | 345 | Add Adenosine deaminase [Nucleotide transport and | 94.69 | |
| COG4464 | 254 | CapC Capsular polysaccharide biosynthesis protein | 94.24 | |
| COG0826 | 347 | Collagenase and related proteases [Posttranslation | 93.2 | |
| COG3618 | 279 | Predicted metal-dependent hydrolase of the TIM-bar | 92.55 | |
| cd01308 | 387 | Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hy | 92.14 | |
| TIGR01431 | 479 | adm_rel adenosine deaminase-related growth factor. | 91.62 | |
| COG1831 | 285 | Predicted metal-dependent hydrolase (urease superf | 91.44 | |
| KOG1097 | 399 | consensus Adenine deaminase/adenosine deaminase [N | 91.15 | |
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 88.91 | |
| PRK08392 | 215 | hypothetical protein; Provisional | 88.52 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 88.47 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 86.86 | |
| PRK10657 | 388 | isoaspartyl dipeptidase; Provisional | 85.94 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 85.8 | |
| PRK01060 | 281 | endonuclease IV; Provisional | 85.71 | |
| smart00518 | 273 | AP2Ec AP endonuclease family 2. These endonuclease | 84.7 | |
| PRK08508 | 279 | biotin synthase; Provisional | 84.26 | |
| TIGR01496 | 257 | DHPS dihydropteroate synthase. This model represen | 82.45 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 81.75 | |
| PRK08609 | 570 | hypothetical protein; Provisional | 81.42 |
| >PLN02942 dihydropyrimidinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-58 Score=463.93 Aligned_cols=375 Identities=86% Similarity=1.335 Sum_probs=325.8
Q ss_pred CccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHHHH
Q 014320 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~ 131 (427)
+.+++|+|++|++++....++|+|+||||++|++....+.+.++||++|++|+|||||+|+|+.+++.+..+++++.+++
T Consensus 4 ~~~lli~~~~v~~~~~~~~~~i~I~~g~I~~i~~~~~~~~~~~~iD~~g~~v~PG~ID~H~H~~~~~~~~~~~ed~~s~s 83 (486)
T PLN02942 4 STKILIKGGTVVNAHHQELADVYVEDGIIVAVAPNLKVPDDVRVIDATGKFVMPGGIDPHTHLAMPFMGTETIDDFFSGQ 83 (486)
T ss_pred CCcEEEECcEEEcCCCCeEeEEEEECCEEEEEcCCCCCCCCCeEEECCCCEEecCEeeeeeccCcccCCCcccchHHHHH
Confidence 46789999999997766778999999999999876432335689999999999999999999998754566789999999
Q ss_pred HHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceeccccCCChhhHHHHHHHHHHcCCCeEEEEEecCCCcc
Q 014320 132 AAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM 211 (427)
Q Consensus 132 ~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~ 211 (427)
++++++||||+.||..+......+.++...+...+..++++++.+.........+++.++.+..|+.++|+|+++++...
T Consensus 84 ~aAl~gGvTTv~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~~l~~~~gv~~~k~~~~~~~~~~ 163 (486)
T PLN02942 84 AAALAGGTTMHIDFVIPVNGNLLAGYEAYEKKAEKSCMDYGFHMAITKWDDTVSRDMETLVKEKGINSFKFFMAYKGSLM 163 (486)
T ss_pred HHHHcCCCeEEEeCCCCCCCCHHHHHHHHHHHHhhcCCCEEEEEEecCCcHhHHHHHHHHHHhCCCceEEEEEecCCCCC
Confidence 99999999999999655443446667666666666678887765544433334566777765568889999998877777
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcC
Q 014320 212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (427)
Q Consensus 212 ~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~ 291 (427)
++++.+.+.++.++++|.++++|+|+.+.+....+++.+.|..++..|...||..+|..++.+++.+++..++++|++|+
T Consensus 164 ~~~~~l~~~~~~a~~~~~~v~~HaE~~~~~~~~~~~~~~~G~~~~~~~~~~rP~~~E~~av~~~~~la~~~g~~~~i~H~ 243 (486)
T PLN02942 164 VTDELLLEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATARAIRLAKFVNTPLYVVHV 243 (486)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHHHcCCCChhhhhccCCchHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 88999999999999999999999999988887777888889999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCC
Q 014320 292 MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAF 371 (427)
Q Consensus 292 ~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~ 371 (427)
++.++++.++.+|+.|++|++++|||||+|+++.+.+.+++.++.++++||+|++.++++||+++++|+++++||||+||
T Consensus 244 s~~~~~e~i~~~k~~G~~Vt~e~~ph~L~l~~~~~~~~~~~~~~~~k~~PPlr~~~~~~~L~~~l~~G~i~~igTDh~p~ 323 (486)
T PLN02942 244 MSIDAMEEIARARKSGQRVIGEPVVSGLVLDDSKLWDPDFTIASKYVMSPPIRPAGHGKALQAALSSGILQLVGTDHCPF 323 (486)
T ss_pred CCHHHHHHHHHHHHCCCcEEEEECchhheeCHHHhcCcccccCcceEECCCCCCHHHHHHHHHHhcCCceEEEECCCCCC
Confidence 99999999999999999999999999999998887543444457899999999999999999999999999999999999
Q ss_pred ChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 372 NSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 372 ~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
+.+.|.++.++|+.+++|++|+|+.+|++|+.++..+.+++.++++++|.||||+
T Consensus 324 ~~~~k~~~~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~i~~~~~l~~~t~~pA~~ 378 (486)
T PLN02942 324 NSTQKAFGKDDFRKIPNGVNGIEERMHLVWDTMVESGQISPTDYVRVTSTECAKI 378 (486)
T ss_pred ChHHhhcccCCHhhCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 9988876556899999999999999999997777777899999999999999985
|
|
| >COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-58 Score=449.48 Aligned_cols=355 Identities=29% Similarity=0.464 Sum_probs=311.5
Q ss_pred cEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHHHHHH
Q 014320 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAA 133 (427)
Q Consensus 54 ~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~~ 133 (427)
+++|+|+++++++....++|.|+||+|++|+.......+.++||++|++|+|||||.|+|+..+ |..++|++.+++++
T Consensus 2 ~~lIk~~~iv~~~~~~~~di~i~~g~I~~Ig~~l~~~~~~~iiD~~g~~v~PG~ID~HVH~rep--g~~~ke~~~tgs~A 79 (430)
T COG0044 2 DLLIKNARVVDPGEDEVADILIKDGKIAAIGKNLEPTSGAEIIDAKGLLVLPGLVDLHVHFREP--GFEHKETFETGSRA 79 (430)
T ss_pred cEEEeccEEEcCCCceEecEEEECCEEEEeccCCCCCCCCcEEECCCCEEccCeeEEEEecCCC--CcchhhhHHHHHHH
Confidence 4799999999996678999999999999999874433567999999999999999999999999 99999999999999
Q ss_pred HHcCCceEEecCcCCCCC-cHHHHHHHHHHHhc-cccceeceeccccCCChhhHHHHHHHHHHcCCCeEEEEEecCCCcc
Q 014320 134 ALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM 211 (427)
Q Consensus 134 ~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~ 211 (427)
++++|||+++||.++.+. ...+.++.....+. +..+++.++++.+.......+ +.+.. ...++|.|++... ..
T Consensus 80 Aa~GG~Ttv~dmPnt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~~it~~~~~~~~-~~~~~---~~~g~~~F~~~~~-~~ 154 (430)
T COG0044 80 AAAGGVTTVVDMPNTKPPIDTAEALEDKLERAKGKSVVDYAFYGGLTKGNLGKLE-LTERG---VEAGFKGFMDDST-GA 154 (430)
T ss_pred HHcCCceEEEECCCCCCCCCCHHHHHHHHHHhhccceeEEEEEEEEeccccchhh-hhhhh---hccceEEEecCCc-Cc
Confidence 999999999999876544 56667766666665 689999999887765543222 22222 1456788988764 45
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcC
Q 014320 212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (427)
Q Consensus 212 ~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~ 291 (427)
.+.+.+++.++.++..|.++.+|+|++..+. ......|...++.|...+|..+|..++.+.+++++.+|+++|++|+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~H~Ed~~~~~---~~~~~~g~~~~~~~~~~~p~~aE~~~iar~~~la~~~g~~vhi~Hi 231 (430)
T COG0044 155 LDDDVLEEALEYAAELGALILVHAEDDDLIA---EGVMNEGLRAPELGLAGRPPIAEASAIARDLELARATGARVHICHI 231 (430)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEecCChhHhh---hHHHhcCccchhhccCCCChHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 6889999999999999999999999987654 3345678888899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCC
Q 014320 292 MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAF 371 (427)
Q Consensus 292 ~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~ 371 (427)
++.++++.++.++..|++|++++|||||+++++++.. .+..+|+|||||++.||++||+++++|++++++|||+||
T Consensus 232 St~~sv~li~~ak~~g~~vt~EvtphHL~l~~~~~~~----~~~~~k~nPPLR~~~dr~aL~~~l~~G~ID~iasDHaPh 307 (430)
T COG0044 232 STKESVELIRAAKAEGIRVTAEVTPHHLLLDEEDIED----LGTLAKVNPPLRDEEDREALWEALKDGVIDVIASDHAPH 307 (430)
T ss_pred CCHHHHHHHHHHhhcCCceEEeecchheEccHhHhhc----cCcceEECCCCCCHHHHHHHHHHHhCCCCcEEEcCCCCC
Confidence 9999999999999999999999999999999988753 247999999999999999999999999999999999999
Q ss_pred ChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 372 NSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 372 ~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
+.++|.. +|+.+|+|++|+|+.+|++|+ +++++.+|+.++++++|.||||+
T Consensus 308 t~eeK~~---~f~~ap~G~~glE~~lpl~l~-lv~~g~lsl~~~v~~~S~nPA~i 358 (430)
T COG0044 308 TLEEKRL---PFEEAPSGIPGLETALPLLLT-LVKKGRLSLERLVELLSTNPARI 358 (430)
T ss_pred CHHHhcc---chhhCCCCCccHHHHHHHHHH-HHHcCCcCHHHHHHHHhhCHHHH
Confidence 9999952 599999999999999999996 99999999999999999999986
|
|
| >KOG2584 consensus Dihydroorotase and related enzymes [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-59 Score=426.53 Aligned_cols=375 Identities=57% Similarity=0.934 Sum_probs=356.2
Q ss_pred CccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHHHH
Q 014320 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~ 131 (427)
...++|+|++|++.+.....+|.++||.|.+|+++...+.+.++||+.|++|+||.||.|+|+.+++.|....++|++++
T Consensus 13 s~rllikgg~vvN~d~~~~aDV~vedGiI~~vg~~l~ipgg~~~ida~g~~ViPGgID~Hthlq~p~~G~ts~DdF~~GT 92 (522)
T KOG2584|consen 13 SNRLLIKGGRVVNDDQSFKADVYVEDGIIKEVGENLIIPGGVKVIDATGKMVIPGGIDPHTHLQMPFMGMTSVDDFFQGT 92 (522)
T ss_pred ccceeeeCCEEEccCCceeeeEEeccCEEEEecccEEcCCCceEEecCCcEEecCccCccceeccccCCccchhhhhccc
Confidence 34589999999999999999999999999999999888888999999999999999999999999999999999999999
Q ss_pred HHHHcCCceEEecCcCCCCC-cHHHHHHHHHHHhc-cccceeceeccccCCChhhHHHHHHHHHHcCCCeEEEEEecCCC
Q 014320 132 AAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGS 209 (427)
Q Consensus 132 ~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~~~~~ 209 (427)
++|+++|||.++|+..+... ++.+.++.+++.+. +..++|+++++.+.|.+...++++-+.+..|+.+||+||++.+.
T Consensus 93 kAAlaGGtTmiID~vlp~~~~slv~afe~wr~~Ad~k~cCDyglhv~It~W~~~v~eem~~l~~ekGvnsF~~fmayk~~ 172 (522)
T KOG2584|consen 93 KAALAGGTTMIIDFVLPDKGTSLVEAFEKWREWADPKVCCDYGLHVGITWWSPSVKEEMEILVKEKGVNSFKFFMAYKDL 172 (522)
T ss_pred HHHhcCCceEEEEEecCCCCchHHHHHHHHHhhcCCceeeeeeeeEeeeecCcchHHHHHHHhhhcCcceEEeeeeeccc
Confidence 99999999999999877654 78899999998875 68999999999999998888889988878999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEE
Q 014320 210 FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV 289 (427)
Q Consensus 210 ~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~ 289 (427)
+++++++|.+.++.+++.|....+|+|+.+.+.+.++++.+.|..+|++|..+||++.|.+|+.+++.++...+|+++++
T Consensus 173 ~~v~d~~lye~l~~~~~lgala~vHAEngd~iae~q~~~l~~gitgPEgh~lSRPee~EaEA~~rai~ia~~~ncPlyvv 252 (522)
T KOG2584|consen 173 YMVRDSELYEALKVCAELGALAMVHAENGDAIAEGQQRLLELGITGPEGHELSRPEELEAEATNRAITIARQANCPLYVV 252 (522)
T ss_pred cccCHHHHHHHHHHHhhcchhheehhhcchhhhhhhhHHHHcCCcCcccccccCchhhhHHHHHHHHHHHHhcCCCcceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcc-cHHHHHHHHhcCCceEEecCC
Q 014320 290 HVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASG-HNKALQAALATGILQLVGTDH 368 (427)
Q Consensus 290 H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~-~~~~l~~~l~~G~~~~lgSD~ 368 (427)
|+.+..+.+.|..+|++|.-|..++....+..+...|++.+|..+..+++.||+|... +.+.||.+|+.|.+...||||
T Consensus 253 hVmsksaa~~Ia~aRk~g~~v~gepita~l~~dg~hy~~~~w~~Aa~~v~sPPlr~d~~t~~~L~~lLa~g~L~~tgSdh 332 (522)
T KOG2584|consen 253 HVMSKSAADAIALARKKGRVVFGEPITASLGTDGSHYWSKDWDHAAAFVTSPPLRPDPTTPDGLMDLLAEGDLQLTGSDH 332 (522)
T ss_pred EEeehhHHHHHHHHHhcCceeecccchhhhcccchhhccCChhhcceeeeCCCCCCCCCCHHHHHHHHhcCccceeecCC
Confidence 9999988999999999998899999888899999999888998889999999999887 789999999999999999999
Q ss_pred CCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 369 CAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 369 ~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
+|++.++|..+++||..+|.|+.|+|.|++++|.++|..|++++.++|..+|+|.||+
T Consensus 333 ctf~~~qKalgKddFt~ip~GvnGvedrMsviwekgv~~G~md~~~fVavtstnaAki 390 (522)
T KOG2584|consen 333 CTFTTEQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVHSGKMDENRFVAVTSTNAAKI 390 (522)
T ss_pred CCCCHHHHhhccCccccCCCccccccccceeeeehhcccCccCcccEEEEecccchhh
Confidence 9999999999999999999999999999999999999999999999999999999986
|
|
| >PLN02795 allantoinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-56 Score=448.24 Aligned_cols=372 Identities=23% Similarity=0.294 Sum_probs=306.0
Q ss_pred CCccCCCCccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCC---CCceEEeCCCCEEeccccccccccccCcCCC
Q 014320 45 PQCGIQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVG---DDVKVLDATGKFVMPGGIDPHTHLAMEFMGS 121 (427)
Q Consensus 45 ~~~~~~~~~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~---~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~ 121 (427)
..|...++.+++|+|++|++++....++|+|+||+|++|++....+ ++.++||++|++|+|||||+|+|+..+ +.
T Consensus 36 ~~~~~~~~~~~vi~~~~vv~~~~~~~~~v~i~dG~I~~I~~~~~~~~~~~~~~~ida~G~~v~PG~ID~H~H~~~~--~~ 113 (505)
T PLN02795 36 DRCSLLPWPHFVLYSKRVVTPAGVIPGAVEVEGGRIVSVTKEEEAPKSQKKPHVLDYGNAVVMPGLIDVHVHLNEP--GR 113 (505)
T ss_pred cccccccccceEEECCEEEECCCeEEEEEEEECCEEEEecCccccccccCCCEEEECCCCEEecCEEecccCcCCC--Cc
Confidence 4444444579999999999987777799999999999998754321 246899999999999999999999876 55
Q ss_pred CChhhHHHHHHHHHcCCceEEecCcC-CCC-CcHHHHHHHHHHHh-ccccceeceeccccCCChhhHHHHHHHHHHcCCC
Q 014320 122 ETIDDFFSGQAAALAGGTTMHIDFVI-PIN-GSLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGIN 198 (427)
Q Consensus 122 ~~~e~~~~~~~~~l~~GvTtv~d~~~-~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~ 198 (427)
..++++.+++++++.+||||++||.. ..+ ....+.++...+.. ....++++++.+.........+++.++. +.|+.
T Consensus 114 ~~~e~~~~~~~aa~~gGvTtv~dmp~~~~P~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~l~~~~-~~G~~ 192 (505)
T PLN02795 114 TEWEGFPTGTKAAAAGGITTLVDMPLNSFPSTTSVETLELKIEAAKGKLYVDVGFWGGLVPENAHNASVLEELL-DAGAL 192 (505)
T ss_pred cchhHHHHHHHHHHcCCcEEEECCCCCCCCCCChHHHHHHHHHHhccCceeeeeceecccCcchhHHHHHHHHH-HCCCc
Confidence 57889999999999999999999972 222 24555565555544 3466777766544332334455666665 67888
Q ss_pred eEEEEEecCCCc---cCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHH
Q 014320 199 SFKFFMAYKGSF---MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRA 275 (427)
Q Consensus 199 ~ik~~~~~~~~~---~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~ 275 (427)
++|+|+.+++.. ..+++.+.++++.++++|+++++|+|+.+.+.... ....|...+..|...||..+|..++.+.
T Consensus 193 g~k~f~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~iH~E~~~l~~~~~--~~~~~~~~~~~~~~~rP~~aE~~ai~~~ 270 (505)
T PLN02795 193 GLKSFMCPSGINDFPMTTATHIKAALPVLAKYGRPLLVHAEVVSPVESDS--RLDADPRSYSTYLKSRPPSWEQEAIRQL 270 (505)
T ss_pred EEEEEecccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecCChhHhhhhh--hhhcCCcChhHhcccCCHHHHHHHHHHH
Confidence 999998775543 56889999999999999999999999987653221 1133444556678889999999999999
Q ss_pred HHHHHhc-------CCCEEEEcCCCH-HHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcc
Q 014320 276 IRLAEFV-------NTPLYVVHVMSM-DAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASG 347 (427)
Q Consensus 276 ~~~~~~~-------g~~~~i~H~~~~-~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~ 347 (427)
+.+++.. ++++|++|+++. ++++.++++|++|++|++++|||||+++++.+.. .+..+|++||||++.
T Consensus 271 ~~la~~~~~~~~~~g~~lhi~HiSt~~~~~e~i~~ak~~G~~Vt~Ev~ph~L~l~~~~~~~----~~~~~k~~PPLR~~~ 346 (505)
T PLN02795 271 LEVAKDTRPGGVAEGAHVHIVHLSDAESSLELIKEAKAKGDSVTVETCPHYLAFSAEEIPD----GDTRYKCAPPIRDAA 346 (505)
T ss_pred HHHHHHhhhcccCCCCCEEEEECCChHHHHHHHHHHHHCCCcEEEEeChhhhcccHHHccC----CCCceEEcCCCCChH
Confidence 9999999 999999999999 9999999999999999999999999999888742 247899999999999
Q ss_pred cHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 348 HNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 348 ~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
|+++||+++++|.+++|+|||+||+.++|.....+|+.+++|++|+|+.+|++|+.++ +++++++++++++|.|||++
T Consensus 347 d~~aL~~al~~G~Id~i~sDHap~~~~~K~~~~~~~~~a~~G~~gle~~l~~~~~~~~-~~~l~l~~~v~~~s~~pA~~ 424 (505)
T PLN02795 347 NRELLWKALLDGDIDMLSSDHSPSPPDLKLLEEGNFLRAWGGISSLQFVLPATWTAGR-AYGLTLEQLARWWSERPAKL 424 (505)
T ss_pred HHHHHHHHHhCCCceEEecCCCCCChHHhccCcCCHhhCCCCceeHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988875556799999999999999999997665 55699999999999999986
|
|
| >PRK07369 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-57 Score=443.70 Aligned_cols=356 Identities=24% Similarity=0.321 Sum_probs=300.9
Q ss_pred ccEEEECcEEEcCCC--ceeeeEEEeCCeEEEeeCCCCC-CCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHH
Q 014320 53 SKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINV-GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS 129 (427)
Q Consensus 53 ~~~~i~~~~i~~~~~--~~~~~i~i~~g~I~~vg~~~~~-~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~ 129 (427)
.+++|+|++|+++.+ ...++|+|+||+|++|++.... +.+.++||++|++|+|||||+|+|+..+ +..+++++.+
T Consensus 2 ~~~~i~n~~v~d~~~~~~~~~~v~I~dg~I~~i~~~~~~~~~~~~~iDa~G~~vlPG~ID~H~H~~~~--~~~~~e~~~s 79 (418)
T PRK07369 2 SNELLQQVRVLDPVSNTDRIADVLIEDGKIQAIEPHIDPIPPDTQIIDASGLILGPGLVDLYSHSGEP--GFEERETLAS 79 (418)
T ss_pred CCEEEeCeEEECCCCCcccceeEEEECCEEEEecCCcccCCCCCEEEECCCCEEecCEEecccccCCC--CcCCCccHHH
Confidence 568999999998553 3578999999999999875431 3457899999999999999999999887 7778899999
Q ss_pred HHHHHHcCCceEEecCcCCCCC-cHHHHHHHHHHHhc-cccceeceeccccCCC-hhhHHHHHHHHHHcCCCeEEEEEec
Q 014320 130 GQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWD-EVVSDEMEVMVKEKGINSFKFFMAY 206 (427)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~g~~~ik~~~~~ 206 (427)
++++++++||||++||.+..+. ...+.++..++... .+.+++.+++...... ...++++.++. +.|+.+||.
T Consensus 80 ~~~aa~~GGvTtv~~~pn~~P~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~ei~~l~-~~Gv~~f~~---- 154 (418)
T PRK07369 80 LAAAAAAGGFTRVAILPDTFPPLDNPATLARLQQQAQQIPPVQLHFWGALTLGGQGKQLTELAELA-AAGVVGFTD---- 154 (418)
T ss_pred HHHHHHhCCceEEEECCCCCCCCCCHHHHHHHHHHhcccCceeEEEEEEEeeCCCCccHhhHHHHH-HCCCEEEEC----
Confidence 9999999999999999754333 45566666665553 4678888877665432 24567777776 678888762
Q ss_pred CCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCE
Q 014320 207 KGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286 (427)
Q Consensus 207 ~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~ 286 (427)
+....+...+.++++.+++.|.++.+|+|+.+.+. ..+...|...++.|...+|..+|..++.+++.+++.+++++
T Consensus 155 -~~~~~~~~~l~~~~~~~~~~~~~v~~H~Ed~~l~~---~~~~~~g~~~~~~~~~~~p~~aE~~av~r~~~la~~~~~~~ 230 (418)
T PRK07369 155 -GQPLENLALLRRLLEYLKPLGKPVALWPCDRSLAG---NGVMREGLLALRLGLPGDPASAETTALAALLELVAAIGTPV 230 (418)
T ss_pred -CCcCCCHHHHHHHHHHHHhcCCeEEEecCChhhhh---cCcccCChhHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCcE
Confidence 12234677888999999999999999999987653 22345566667777788999999999999999999999999
Q ss_pred EEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEec
Q 014320 287 YVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGT 366 (427)
Q Consensus 287 ~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgS 366 (427)
|++|+++.++++.++++|++|++|++|+|||||+++++.+.. .+.++|++||||++.|+++||+++++|.+++|+|
T Consensus 231 hi~HvSs~~~~~~i~~ak~~g~~vt~Ev~phhL~l~~~~~~~----~~~~~kv~PPLR~~~d~~aL~~~l~~G~Id~i~S 306 (418)
T PRK07369 231 HLMRISTARSVELIAQAKARGLPITASTTWMHLLLDTEALAS----YDPNLRLDPPLGNPSDRQALIEGVRTGVIDAIAI 306 (418)
T ss_pred EEEeCCCHHHHHHHHHHHHcCCCeEEEecHHHHhccHHHHhc----cCCCcEECCCCCCHHHHHHHHHHHhcCCCCEEEc
Confidence 999999999999999999999999999999999999988742 1367899999999999999999999999999999
Q ss_pred CCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 367 DHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 367 D~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
||+||+.++|. .+|+.+++|++|+++.+|++++.++++++++++++++++|.||||+
T Consensus 307 DHaP~~~~~K~---~~~~~~~~G~~G~e~~l~~~~~~~v~~~~i~l~~~v~~~s~nPA~~ 363 (418)
T PRK07369 307 DHAPYTYEEKT---VAFAEAPPGAIGLELALPLLWQNLVETGELSALQLWQALSTNPARC 363 (418)
T ss_pred CCCCCCHHHcc---CCHhHCCCCceeHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhHHHH
Confidence 99999998885 3899999999999999999998888889999999999999999985
|
|
| >PRK13404 dihydropyrimidinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-56 Score=444.57 Aligned_cols=370 Identities=36% Similarity=0.601 Sum_probs=312.5
Q ss_pred CccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCc-CCCCChhhHHHH
Q 014320 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEF-MGSETIDDFFSG 130 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~-~g~~~~e~~~~~ 130 (427)
+.+++|+|++|+++.+...++|+|+||+|++|++.. +.+.++||++|++|+|||||+|+|+.++. .+....+++.++
T Consensus 3 ~~d~~i~~~~v~~~~~~~~~~i~I~dg~I~~i~~~~--~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~e~~~~~ 80 (477)
T PRK13404 3 AFDLVIRGGTVVTATDTFQADIGIRGGRIAALGEGL--GPGAREIDATGRLVLPGGVDSHCHIDQPSGDGIMMADDFYTG 80 (477)
T ss_pred CCcEEEECCEEEcCCCceEEEEEEECCEEEEecCCC--CCCCeEEECCCCEEecCEEEeEEcCCccccCCccccchHHHH
Confidence 457899999999987666789999999999998643 34568999999999999999999997651 134467899999
Q ss_pred HHHHHcCCceEEecCcCCCC-CcHHHHHHHHHHHh-ccccceeceeccccCCChhhH-HHHHHHHHHcCCCeEEEEEecC
Q 014320 131 QAAALAGGTTMHIDFVIPIN-GSLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVS-DEMEVMVKEKGINSFKFFMAYK 207 (427)
Q Consensus 131 ~~~~l~~GvTtv~d~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~g~~~ik~~~~~~ 207 (427)
+++++.+||||++|+..... ....+.++...... ....++++++.......++.. ++++++. +.|+.+||+|+++.
T Consensus 81 s~aa~~gGvTtv~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~v~~l~-~~G~~~iKi~~~~~ 159 (477)
T PRK13404 81 TVSAAFGGTTTVIPFAAQHRGQSLREAVEDYHRRAAGKAVIDYAFHLIVADPTEEVLTEELPALI-AQGYTSFKVFMTYD 159 (477)
T ss_pred HHHHHcCCccEEEEccCCCCCCCHHHHHHHHHHHhccCcEEEEEEEEEecCCChhhHHHHHHHHH-HcCCCEEEEEecCC
Confidence 99999999999999864322 25556666665544 346778877765544333333 5677777 78999999998654
Q ss_pred CCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEE
Q 014320 208 GSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287 (427)
Q Consensus 208 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~ 287 (427)
+ +.+++++++++++.|+++|.++.+|+|+.+.+....+.+.+.|..+++.|...||..+|..++.+.+.+++++|+++|
T Consensus 160 ~-~~~~~~~l~~~~~~a~~~g~~V~~Hae~~~~i~~~~~~~~~~G~~~~~~~~~~rp~~~E~~~v~~~~~la~~~g~~~h 238 (477)
T PRK13404 160 D-LKLDDRQILDVLAVARRHGAMVMVHAENHDMIAWLTKRLLAAGLTAPKYHAISRPMLAEREATHRAIALAELVDVPIL 238 (477)
T ss_pred C-CCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHCCCcchhhccccCCHHHHHHHHHHHHHHHHHhCCCEE
Confidence 3 557889999999999999999999999998887666788889999999999999999999999999999999999999
Q ss_pred EEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecC
Q 014320 288 VVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTD 367 (427)
Q Consensus 288 i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD 367 (427)
++|+++..+++.++++|+.|+.+++++|||||+++++.+...+. .|..++++||+|++.++++||+++.+|.+++|+||
T Consensus 239 i~Hvs~~~~~~~i~~~k~~g~~vt~e~~ph~L~l~~~~~~~~~~-~g~~~k~~Pplr~~~d~~aL~~~l~~G~id~i~sD 317 (477)
T PRK13404 239 IVHVSGREAAEQIRRARGRGLKIFAETCPQYLFLTAEDLDRPGM-EGAKYICSPPPRDKANQEAIWNGLADGTFEVFSSD 317 (477)
T ss_pred EEECCCHHHHHHHHHHHHCCCeEEEEEChhhhccCHHHhcCccc-cCCceEECCCCCChHHHHHHHHHHhCCCceEEecC
Confidence 99999999999999999999999999999999999988743111 24789999999999999999999999999999999
Q ss_pred CCCCChhhhh----cC-CCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 368 HCAFNSTQKA----FG-IDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 368 ~~p~~~~~~~----~~-~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
|+||+.++|. .+ ..+|+.+++|++|+|+.+|++++.++..+.++++++++++|.||||+
T Consensus 318 Hap~~~~eK~~~~~~~~~~~~~~~~~G~~gie~~l~~ll~~~v~~~~ls~~~~~~~~t~~pA~~ 381 (477)
T PRK13404 318 HAPFRFDDTDGKLAAGANPSFKAIANGIPGIETRLPLLFSEGVVKGRISLNRFVALTSTNPAKL 381 (477)
T ss_pred CCCCCcccchhhhhccCCCCHhhCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 9999976551 11 23799999999999999999998778788899999999999999985
|
|
| >PRK08323 phenylhydantoinase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-54 Score=431.56 Aligned_cols=368 Identities=52% Similarity=0.818 Sum_probs=316.3
Q ss_pred cEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHHHHHH
Q 014320 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAA 133 (427)
Q Consensus 54 ~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~~ 133 (427)
+++|+|++|++++...+++|+|+||||++|++. .+.++||++|++|+|||||+|+|+..+..+..++++++.+++.
T Consensus 2 d~li~n~~v~~~~~~~~~~v~I~~g~I~~i~~~----~~~~viD~~g~~v~PGlID~H~H~~~~~~~~~~~e~~~~~~~~ 77 (459)
T PRK08323 2 STLIKNGTVVTADDTYKADVLIEDGKIAAIGAN----LGDEVIDATGKYVMPGGIDPHTHMEMPFGGTVSSDDFETGTRA 77 (459)
T ss_pred cEEEECCEEEcCCCceEEEEEEECCEEEEEecC----CCceEEECCCCEEeccEEeeeeccccccCCccccCcHHHHHHH
Confidence 579999999998777789999999999999874 2468999999999999999999998764444578889999999
Q ss_pred HHcCCceEEecCcCCCCC-cHHHHHHHHHHHh-ccccceeceeccccCCChhhHHHHHHHHHHcCCCeEEEEEecCCCcc
Q 014320 134 ALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM 211 (427)
Q Consensus 134 ~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~ 211 (427)
++++||||++|+....+. ...+.++...... ....++++++........+.++++++++ +.|+..+|+++++++.+.
T Consensus 78 a~~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~g~~~ik~~~~~~~~~~ 156 (459)
T PRK08323 78 AACGGTTTIIDFALQPKGQSLREALEAWHGKAAGKAVIDYGFHMIITDWNEVVLDEMPELV-EEGITSFKLFMAYKGALM 156 (459)
T ss_pred HHhCCCCEEEeCcCCCCCCChHHHHHHHHHHhccCceEEEEEEEEecCCcHHHHHHHHHHH-HcCCCEEEEEEecCCCCC
Confidence 999999999998754432 4555666555543 2356777666443334455577788877 688899999998887788
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcC
Q 014320 212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (427)
Q Consensus 212 ~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~ 291 (427)
+++++++++++.|+++|.++++|+|+.+.+....+.+.+.|...++.|...+|..+|..++.+.+++++..++++|++|+
T Consensus 157 ~s~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~~~a~~~~~~~~i~H~ 236 (459)
T PRK08323 157 LDDDELLRALQRAAELGALPMVHAENGDAIAYLQAKLLAEGKTGPEYHALSRPPEVEGEATNRAIMLAELAGAPLYIVHV 236 (459)
T ss_pred CCHHHHHHHHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCChhhhhccCCHHHHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 89999999999999999999999999888887777888889999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCC
Q 014320 292 MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAF 371 (427)
Q Consensus 292 ~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~ 371 (427)
++.++++.++.+|+.|++|++++||||++++.+.+...++..|..++++||+|++.++++||+++++|++++|||||+|+
T Consensus 237 s~~~~~~~i~~ak~~g~~vt~e~~p~~l~l~~~~~~~~~~~~g~~~k~~pPlr~~~~~~~l~~~l~~G~i~~i~sDh~p~ 316 (459)
T PRK08323 237 SCKEALEAIRRARARGQRVFGETCPQYLLLDESEYDGPDWFEGAKYVMSPPLRDKEHQDALWRGLQDGDLQVVATDHCPF 316 (459)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEcCccceeecHHHhcCCccccccceEECCCCCChHHHHHHHHHhhcCCeeEEECCCCCC
Confidence 99999999999999999999999999999998876432211246889999999999999999999999999999999999
Q ss_pred Chhhhh-cCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 372 NSTQKA-FGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 372 ~~~~~~-~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
+..+|. .+.++|+.+|+|++|.++++|++++..+.++.++++++++++|.|||++
T Consensus 317 ~~~~~~~~~~~~~~~~p~G~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~t~~pA~~ 372 (459)
T PRK08323 317 CFEQKKQLGRGDFTKIPNGTPGVEDRMPLLFSEGVMTGRITLNRFVELTSTNPAKI 372 (459)
T ss_pred ChHHhcccccCCHhhCCCCcchHhhhHHHHHHHHHHcCCCCHHHHHHHHhhHHHHH
Confidence 987775 2456899999999999999999997777788899999999999999985
|
|
| >PRK07627 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-55 Score=430.07 Aligned_cols=355 Identities=21% Similarity=0.224 Sum_probs=287.0
Q ss_pred cEEEECcEEEcCCCc--eeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHHHH
Q 014320 54 KILIKGGTVVNAHHQ--QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131 (427)
Q Consensus 54 ~~~i~~~~i~~~~~~--~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~ 131 (427)
+++|+|++|+++.+. ..++|+|+||||++|++......+.++||++|++|+|||||+|+|+..+ +....+++.+++
T Consensus 2 ~~~i~~~~v~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~iDa~g~~vlPG~iD~H~H~~~~--g~~~~e~~~t~s 79 (425)
T PRK07627 2 KIHIKGGRLIDPAAGTDRQADLYVAAGKIAAIGQAPAGFNADKTIDASGLIVCPGLVDLSARLREP--GYEYKATLESEM 79 (425)
T ss_pred eEEEEeeEEECCCCCccceeEEEEECCEEEEecCCCcCCCCCeEEECCCCEEeccEEeccccccCC--CccccCcHHHHH
Confidence 589999999986553 5789999999999998753223457899999999999999999999887 667789999999
Q ss_pred HHHHcCCceEEecCcCCCCC-cHHHHHHHHHHHhc-cccceeceecccc-CCChhhHHHHHHHHHHcCCCeEEEEEecCC
Q 014320 132 AAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAIT-KWDEVVSDEMEVMVKEKGINSFKFFMAYKG 208 (427)
Q Consensus 132 ~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~g~~~ik~~~~~~~ 208 (427)
++++.+||||++++....+. ...+.++....... ....++..++... ....+.+.++.++. +.|+.+||.+ +
T Consensus 80 ~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~l~-~~G~~~fk~~----~ 154 (425)
T PRK07627 80 AAAVAGGVTSLVCPPDTDPVLDEPGLVEMLKFRARNLNQAHVYPLGALTVGLKGEVLTEMVELT-EAGCVGFSQA----N 154 (425)
T ss_pred HHHHhCCeeEEEeCCCCCCCCCCHHHHHHHHHHhhccCceeEEEeCeEEcCCCccCHHHHHHHH-hCCEEEEEcC----C
Confidence 99999999999998654332 33333444333322 2344433333222 22345567788877 6788888853 2
Q ss_pred CccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEE
Q 014320 209 SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV 288 (427)
Q Consensus 209 ~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i 288 (427)
.+..+...+.+.++.+++.|.++.+|+|+...... .....|....+.+...+|..+|..++.+++.+++.+++++||
T Consensus 155 ~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~~~~~---~~~~~g~~~~~~~~~~~P~~aE~~av~r~~~la~~~~~~~hi 231 (425)
T PRK07627 155 VPVVDTQVLLRALQYASTFGFTVWLRPLDAFLGRG---GVAASGAVASRLGLSGVPVAAETIALHTIFELMRVTGARVHL 231 (425)
T ss_pred cccCCHHHHHHHHHHHHhcCCEEEEecCChhhhhC---CCcCCCHhHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCcEEE
Confidence 23467888999999999999999999998754321 122234344556677899999999999999999999999999
Q ss_pred EcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCC
Q 014320 289 VHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDH 368 (427)
Q Consensus 289 ~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~ 368 (427)
+|+++.++++.++++|++|++|++|+|||||+|+++.+.+ .+..+|++||||++.++++||+++++|++++++|||
T Consensus 232 ~HvSs~~~~~~i~~ak~~g~~vt~Ev~ph~L~l~~~~~~~----~~~~~k~~PPLR~~~d~~~L~~~l~~G~id~i~SDH 307 (425)
T PRK07627 232 ARLSSAAGVALVRAAKAEGLPVTCDVGVNHVHLIDVDIGY----FDSQFRLDPPLRSQRDREAIRAALADGTIDAICSDH 307 (425)
T ss_pred EeCCCHHHHHHHHHHHHCCCCeEEEeccchheEeHhHHhc----cCCceEEeCCCCCHHHHHHHHHHHhcCCCcEEEcCC
Confidence 9999999999999999999999999999999999887742 236899999999999999999999999999999999
Q ss_pred CCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 369 CAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 369 ~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
+||+.++|. .+|+.+++|++|+|+.+|+++. .+.+++++++++++++|.|||++
T Consensus 308 aP~~~~~k~---~~~~~~~~G~~g~e~~~pl~~~-~~~~~~i~~~~~l~~~t~~pA~~ 361 (425)
T PRK07627 308 TPVDDDEKL---LPFAEATPGATGLELLLPLTLK-WADEAKVPLARALARITSAPARV 361 (425)
T ss_pred CCCCHHHcc---CCHhhCCCCceeHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHHH
Confidence 999987775 3899999999999999999985 45567899999999999999974
|
|
| >cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-54 Score=429.18 Aligned_cols=370 Identities=54% Similarity=0.861 Sum_probs=315.1
Q ss_pred EEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHHHHHHH
Q 014320 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAA 134 (427)
Q Consensus 55 ~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~~~ 134 (427)
++|+|++|++++...+++|+|+||||++|++....+.+.++||++|++|+|||||+|+|+.++.....++++++.+++++
T Consensus 1 lli~~~~v~~~~~~~~~~i~I~~g~I~~ig~~~~~~~~~~viD~~g~~vlPGlID~H~H~~~~~~~~~~~e~~~~~~~~a 80 (447)
T cd01314 1 LIIKNGTIVTADGSFKADILIEDGKIVAIGPNLEAPGGVEVIDATGKYVLPGGIDPHTHLELPFMGTVTADDFESGTRAA 80 (447)
T ss_pred CEEECCEEECCCCceeeeEEEECCEEEEeeCCCCCCCCceEEECCCCEEecCEEeccccccccccCccCcchHHHHHHHH
Confidence 37999999998777789999999999999875433334689999999999999999999987633346788999999999
Q ss_pred HcCCceEEecCcCCCC-CcHHHHHHHHHHHh-ccccceeceeccccCCChhhHHHHHHHHHHcCCCeEEEEEecCCCccC
Q 014320 135 LAGGTTMHIDFVIPIN-GSLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI 212 (427)
Q Consensus 135 l~~GvTtv~d~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~ 212 (427)
+.+||||++|+..+.+ ....+.++...... .+..++++++.......++.++++.++. +.|+..+|+++++++.+.+
T Consensus 81 ~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~-~~g~~~ik~~~~~~~~~~~ 159 (447)
T cd01314 81 AAGGTTTIIDFAIPNKGQSLLEAVEKWRGKADGKSVIDYGFHMIITDWTDSVIEELPELV-KKGISSFKVFMAYKGLLMV 159 (447)
T ss_pred HhCCCcEEEeCCCCCCCCCHHHHHHHHHHHhcCCCcccEEEEEeecCCChHHHHHHHHHH-HcCCCEEEEEeccCCCCCC
Confidence 9999999999975433 24555565554433 3356666665444333445567777777 4788899999998888888
Q ss_pred CHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCC
Q 014320 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292 (427)
Q Consensus 213 ~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~ 292 (427)
+++.++++++.|+++|+++++|+|+...+....+++...|....+.|...+|...|..++.+.+.+++..++++|++|++
T Consensus 160 s~~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~~~~~~~~H~s 239 (447)
T cd01314 160 DDEELLDVLKRAKELGALVMVHAENGDVIAELQKKLLAQGKTGPEYHALSRPPEVEAEATARAIRLAELAGAPLYIVHVS 239 (447)
T ss_pred CHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHHHcCCCChHHhhhcCCHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 99999999999999999999999998888877777778899888889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCC
Q 014320 293 SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFN 372 (427)
Q Consensus 293 ~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~ 372 (427)
+.++++.++.+|++|+++++++||||++++++.+...+ ..|..++++||+|++.++++||+++++|++++|||||+|++
T Consensus 240 ~~~~~~~i~~~k~~g~~v~~~~~ph~l~~~~~~~~~~~-~~g~~~~~~pplr~~~~~~~l~~~l~~G~i~~igsDh~~~~ 318 (447)
T cd01314 240 SKEAADEIARARKKGLPVYGETCPQYLLLDDSDYWKDW-FEGAKYVCSPPLRPKEDQEALWDGLSSGTLQTVGSDHCPFN 318 (447)
T ss_pred CHHHHHHHHHHHHCCCeEEEecCchhheeCHHHhcccc-ccccceEECCCCCChHHHHHHHHHHhCCCeeEEECCCCCCC
Confidence 99999999999999999999999999999988763211 12467899999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 373 STQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 373 ~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
...|....++|+.+++|++|+|+++|++|++++..+.++++++++++|.||||+
T Consensus 319 ~~~k~~~~~~~~~~~~G~~g~e~~l~~l~~~~~~~~~~~~~~~~~~~t~~pA~~ 372 (447)
T cd01314 319 FAQKARGKDDFTKIPNGVPGVETRMPLLWSEGVAKGRITLEKFVELTSTNPAKI 372 (447)
T ss_pred HHHhhcccCCHhhCCCCCchHhhhHHHHHHHHHHcCCCCHHHHHHHHhhHHHHH
Confidence 988875445899999999999999999998888788899999999999999985
|
The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues. |
| >TIGR02033 D-hydantoinase D-hydantoinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-54 Score=429.01 Aligned_cols=371 Identities=54% Similarity=0.819 Sum_probs=312.1
Q ss_pred EEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHHHHHHH
Q 014320 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAA 134 (427)
Q Consensus 55 ~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~~~ 134 (427)
++|+|++|++++...+++|+|+||||++|++....+.+.++||++|++|+|||||+|+|+..+..+..++++++.+++++
T Consensus 1 ~li~n~~vv~~~~~~~~~V~I~dg~I~~Ig~~~~~~~~~~vIDa~G~~vlPGlID~H~H~~~~~~~~~~~e~~~~~s~~a 80 (454)
T TIGR02033 1 KLIRGGTVVNADDVFQADVLIEGGKIVAVGRNLSPPDAVEEIDATGKYVMPGGIDVHTHLEMPFGGTVTADDFFTGTKAA 80 (454)
T ss_pred CEEECcEEEcCCCceEEEEEEECCEEEEecCCCCCCCCCcEEECCCCEEecCEecceeccCcccCCCCCcchHHHHHHHH
Confidence 37999999998777789999999999999975433334589999999999999999999987644456789999999999
Q ss_pred HcCCceEEecCcCCCCC-cHHHHHHHHHHHhc-cccceeceeccccCCChhhHHHHHHHHHHcCCCeEEEEEecCCCccC
Q 014320 135 LAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI 212 (427)
Q Consensus 135 l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~ 212 (427)
+++||||++|+....+. ...+.++...+... +..++++++........+..++..+...+.|+..+|+++++++.+.+
T Consensus 81 ~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~ 160 (454)
T TIGR02033 81 AAGGTTTIIDFALPHKGESLTEALETWHEKAEGKSVIDYGFHMMITHWNDEVLEEHIPELVEEGITSFKVFMAYKNLLMV 160 (454)
T ss_pred HhCCCCEEEeCcCCCCCCCHHHHHHHHHHHhccCceEEEEEEecccCCcHHHHHHHHHHHHhcCCcEEEEEeecCCCCCC
Confidence 99999999998755432 45566666555443 35666666544333334444453333336788999999998878889
Q ss_pred CHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCC
Q 014320 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292 (427)
Q Consensus 213 ~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~ 292 (427)
++++++++++.|+++|+++++|+|+........+++.+.|......|...+|..+|..++.+.+.+++..++++|++|++
T Consensus 161 ~~~~l~~~~~~a~~~~~~v~~H~E~~~~~~~~~~~~~~~G~~~~~~~~~~~p~~~e~~~v~~~~~~~~~~~~~~~i~H~s 240 (454)
T TIGR02033 161 DDEELFEILKRAKELGALLQVHAENGDVIAELQARLLAQGKTGPEYHALSRPPESEAEAVARAIALAALANAPLYVVHVS 240 (454)
T ss_pred CHHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHHHcCCCChhHhhhcCCHHHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 99999999999999999999999998887777788888899999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCC
Q 014320 293 SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFN 372 (427)
Q Consensus 293 ~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~ 372 (427)
+..+++.++.+|+.|++|++++||||++++.+.+..++.+. ..++++||+|++.++++||+++++|+++++||||+|++
T Consensus 241 ~~~~~~~i~~~~~~g~~vt~e~~p~~l~~~~~~~~~~~~~~-~~~~~~pPlr~~~~~~~l~~~l~~G~i~~igtDh~p~~ 319 (454)
T TIGR02033 241 TASAVDEIAEAREKGQPVYGETCPQYLLLDDTIYDKPGFEG-AKYVCSPPLREKEDQDALWSALSSGALQTVGSDHCPFN 319 (454)
T ss_pred CHHHHHHHHHHHHCCCeEEEEcCchheeecHHHhcCccccc-ceeEECCCCCChhhHHHHHHHhhcCCeEEEECCCCCCC
Confidence 99889999999999999999999999999988875323222 57899999999999999999999999999999999999
Q ss_pred hhhh-hcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 373 STQK-AFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 373 ~~~~-~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
...| ....++|+.+++|++|+|+.++++|+.++.++.++++++++++|.|||++
T Consensus 320 ~~~k~~~~~~~~~~~~~G~~g~e~~l~~l~~~~v~~~~~~~~~~~~~~t~~pa~~ 374 (454)
T TIGR02033 320 FAQKKAIGKDDFTKIPNGGPGVEERMTLLFDEGVATGRITLEKFVELTSTNPAKI 374 (454)
T ss_pred HHHhhhcccCCHhhCCCCCchHHhHHHHHHHHHHHcCCCCHHHHHHHHhhHHHHH
Confidence 8776 22235799999999999999999998888888899999999999999985
|
This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme. |
| >PRK09059 dihydroorotase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-54 Score=425.54 Aligned_cols=358 Identities=19% Similarity=0.269 Sum_probs=293.7
Q ss_pred CCccEEEECcEEEcCCCc--eeeeEEEeCCeEEEeeCCCC---CCCCceEEeCCCCEEeccccccccccccCcCCCCChh
Q 014320 51 SSSKILIKGGTVVNAHHQ--QIADVYVEDGIVVAVQPNIN---VGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETID 125 (427)
Q Consensus 51 ~~~~~~i~~~~i~~~~~~--~~~~i~i~~g~I~~vg~~~~---~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e 125 (427)
|+.+++|+|++|+++.+. .+++|+|+||||++|++... .+.+.++||++|++|+|||||+|+|+..+ +..+.+
T Consensus 1 ~~~~~~i~n~~v~~~~~~~~~~~~v~I~~G~I~~i~~~~~~~~~~~~~~viDa~G~~v~PG~ID~HvH~~~~--~~~~~e 78 (429)
T PRK09059 1 MMRPILLANARIIDPSRGLDEIGTVLIEDGVIVAAGKGAGNQGAPEGAEIVDCAGKAVAPGLVDARVFVGEP--GAEHRE 78 (429)
T ss_pred CCcCEEEEeeEEECCCCCcccceEEEEECCEEEEecCccccccCCCCCeEEECCCCEEeccEEecccccCCC--Cchhhh
Confidence 467899999999997763 46899999999999987432 23456899999999999999999999876 556788
Q ss_pred hHHHHHHHHHcCCceEEecCcCCCCC-cHHHHHHHHHHHhcc-ccceeceeccccCC-ChhhHHHHHHHHHHcCCCeEEE
Q 014320 126 DFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN-SCMDYGFHMAITKW-DEVVSDEMEVMVKEKGINSFKF 202 (427)
Q Consensus 126 ~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~g~~~ik~ 202 (427)
++.+.+++++.+||||++++....+. ...+.++.+.+...+ +.+++.+++....+ .++.+.++.++. ..|+..++.
T Consensus 79 ~~~~~s~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~l~e~~~l~-~~Gv~~f~~ 157 (429)
T PRK09059 79 TIASASRAAAAGGVTSIIMMPDTDPVIDDVALVEFVKRTARDTAIVNIHPAAAITKGLAGEEMTEFGLLR-AAGAVAFTD 157 (429)
T ss_pred hHHHHHHHHHhCCcEEEEeccCCCCCCCCHHHHHHHHHHhcccCcccEEEEeEEecCCCCcchHHHHHHH-hcCcEEEec
Confidence 89999999999999999999754332 445666666655543 57888877665443 344566777776 677766652
Q ss_pred EEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhc
Q 014320 203 FMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFV 282 (427)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~ 282 (427)
. +.+..+...+.++++.+++.|+++.+|+|+.+.+.. .....|......|...||..+|..++.+++.+++.+
T Consensus 158 ---~-~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~l~~~---~~~~~~~~~~~~~~~~rP~~aE~~av~r~~~la~~~ 230 (429)
T PRK09059 158 ---G-RRSVANTQVMRRALTYARDFDAVIVHETRDPDLGGN---GVMNEGLFASWLGLSGIPREAEVIPLERDLRLAALT 230 (429)
T ss_pred ---C-CcccCCHHHHHHHHHHHHhcCCEEEEecCChhhhcC---CCcCCcHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 1 122346677889999999999999999999875431 111222223345567899999999999999999999
Q ss_pred CCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCce
Q 014320 283 NTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQ 362 (427)
Q Consensus 283 g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~ 362 (427)
++++|++|+++.++++.++++|+.|++|++++|||||+|+++.+.+ + +..+|++||||++.|+++||+++++|.++
T Consensus 231 ~~~~hi~hvs~~~~~~~i~~ak~~g~~vt~ev~phhL~l~~~~~~~--~--~~~~kvnPPLR~~~d~~~L~~~l~~g~id 306 (429)
T PRK09059 231 RGRYHAAQISCAESAEALRRAKDRGLKVTAGVSINHLSLNENDIGE--Y--RTFFKLSPPLRTEDDRVAMVEAVASGTID 306 (429)
T ss_pred CCcEEEEecCCHHHHHHHHHHHHCCCCEEEeecHHHHhccHHHHhc--c--CCccEEcCCCCCHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999999999999999999887742 2 36899999999999999999999999999
Q ss_pred EEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 363 LVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 363 ~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
+++|||+||+.++|. .+|+.+++|++|+|+.+|+++ .++.++.++++++++++|.||||+
T Consensus 307 ~i~sDh~p~~~~~K~---~~~~~~~~G~~gle~~l~~~~-~~v~~~~l~l~~~~~~~s~nPA~~ 366 (429)
T PRK09059 307 IIVSSHDPQDVDTKR---LPFSEAAAGAIGLETLLAAAL-RLYHNGEVPLLRLIEALSTRPAEI 366 (429)
T ss_pred EEEeCCCCCCHHHCc---CChhhCCCCcccHHHHHHHHH-HHHHcCCCCHHHHHHHHhHHHHHH
Confidence 999999999988875 389999999999999999999 478888999999999999999985
|
|
| >PRK08417 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-54 Score=420.26 Aligned_cols=327 Identities=19% Similarity=0.262 Sum_probs=273.7
Q ss_pred EEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCC-
Q 014320 73 VYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING- 151 (427)
Q Consensus 73 i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~- 151 (427)
|+|+||||++|++.. .+.++||++|++|+|||||+|+|+..+ +.. .+++.+++++++++||||++||.+..+.
T Consensus 1 i~I~dG~I~~i~~~~---~~~~viDa~g~~vlPG~ID~HvH~~~~--~~~-~e~~~t~s~aA~aGGvTtv~dmpnt~P~~ 74 (386)
T PRK08417 1 IRIKDGKITEIGSDL---KGEEILDAKGKTLLPALVDLNVSLKND--SLS-SKNLKSLENECLKGGVGSIVLYPDSTPAI 74 (386)
T ss_pred CEEECCEEEEecCCC---CCCeEEECCCCEEccCeeEEeeeeCCC--CcC-hhhHHHHHHHHHcCCcEEEEeCCCCCCCC
Confidence 689999999998753 346899999999999999999999876 433 5899999999999999999999754332
Q ss_pred cHHHHHHHHHHHhc---cccceeceeccccCCChhhHHHHHHHHHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcC
Q 014320 152 SLTAGFEAYEKKAK---NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG 228 (427)
Q Consensus 152 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g 228 (427)
...+.++...+... ...+++.. ... .++.++++.++. +.|+..||.+. ..+++.+.++++.+++.|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~i~~l~-~~Gv~~~k~~~------~~~~~~l~~~~~~a~~~g 143 (386)
T PRK08417 75 DNEIALELINSAQRELPMQIFPSIR---ALD-EDGKLSNIATLL-KKGAKALELSS------DLDANLLKVIAQYAKMLD 143 (386)
T ss_pred CCHHHHHHHHHHhhccCCcEEEEEE---EEC-CCccHHHHHHHH-HCCCEEEECCC------CCCHHHHHHHHHHHHHcC
Confidence 33444544444332 22344322 222 334467787776 78988887531 368889999999999999
Q ss_pred CcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCC
Q 014320 229 ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQ 308 (427)
Q Consensus 229 ~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~ 308 (427)
+++.+|+|+.+.+.. .+...|....+.+...||..+|..++.+++++++++++++|++|+++.++++.++.+|+.|+
T Consensus 144 ~~V~~HaEd~~~~~~---~~~~~g~~~~~~~~~~rp~~aE~~~v~~~~~la~~~~~~lhi~hvS~~~~~~~i~~ak~~g~ 220 (386)
T PRK08417 144 VPIFCRCEDSSFDDS---GVMNDGELSFELGLPGIPSIAETKEVAKMKELAKFYKNKVLFDTLALPRSLELLDKFKSEGE 220 (386)
T ss_pred CEEEEeCCCHHHhhH---HHHhcChhhHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCC
Confidence 999999999776543 34556777777888889999999999999999999999999999999999999999999999
Q ss_pred CEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCC
Q 014320 309 RVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPN 388 (427)
Q Consensus 309 ~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~ 388 (427)
+|++|+|||||+|+++++.+ + +..+|++||||++.||++||+++++|.+++|+|||+||+.++|. .+|+.+++
T Consensus 221 ~vt~ev~ph~L~l~~~~~~~--~--~~~~k~~PPlR~~~d~~~L~~~l~~g~Id~i~SDHaP~~~~~K~---~~~~~a~~ 293 (386)
T PRK08417 221 KLLKEVSIHHLILDDSACEN--F--NTAAKLNPPLRSKEDRLALLEALKEGKIDFLTSLHSAKSNSKKD---LAFDEAAF 293 (386)
T ss_pred CEEEEechHHHeeCHHHhcC--c--CcccEECCCCCCHHHHHHHHHHHhcCCceEEEcCCCCCCHHHcc---CCHhHCCC
Confidence 99999999999999887732 2 36889999999999999999999999999999999999988875 37999999
Q ss_pred CCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 389 GVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 389 G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
|++|+|+.+|++|+.+++++.++++++++++|.|||++
T Consensus 294 G~~g~e~~~~~~~~~~v~~~~~~~~~~~~~~t~~pA~~ 331 (386)
T PRK08417 294 GIDSICEYFSLCYTYLVKEGIITWSELSRFTSYNPAQF 331 (386)
T ss_pred CchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999998888888999999999999999985
|
|
| >PRK06189 allantoinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-53 Score=419.63 Aligned_cols=363 Identities=26% Similarity=0.356 Sum_probs=306.9
Q ss_pred CCccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHHH
Q 014320 51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSG 130 (427)
Q Consensus 51 ~~~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~ 130 (427)
|+.+++|+|++|+++++...++|+|+||+|++|++... .++.++||++|++|+|||||+|+|+..+ +...++++.++
T Consensus 1 ~~~~~~i~~~~v~~~~~~~~~~v~i~~G~I~~i~~~~~-~~~~~~iD~~g~~vlPG~ID~H~H~~~~--~~~~~~~~~~~ 77 (451)
T PRK06189 1 MMYDLIIRGGKVVTPEGVYRADIGIKNGKIAEIAPEIS-SPAREIIDADGLYVFPGMIDVHVHFNEP--GRTHWEGFATG 77 (451)
T ss_pred CCccEEEECCEEEcCCCcEEEEEEEECCEEEEecCCCC-CCCCeEEECCCCEEecCEEEeeeccCCC--CCCCcccHHHH
Confidence 35678999999999887778999999999999987543 2346799999999999999999999876 55678899999
Q ss_pred HHHHHcCCceEEecCc-CC-CCCcHHHHHHHHHHHh-ccccceeceeccccCCChhhHHHHHHHHHHcCCCeEEEEEecC
Q 014320 131 QAAALAGGTTMHIDFV-IP-INGSLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYK 207 (427)
Q Consensus 131 ~~~~l~~GvTtv~d~~-~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~~~ 207 (427)
+++++++||||+++|. +. +.....+.++...+.. ..+.+++.++..... +..+++.++. +.|+..+|+|++..
T Consensus 78 ~~aa~~gGvTt~~~~p~~t~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~l~~l~-~~Gv~~~k~f~~~~ 153 (451)
T PRK06189 78 SAALAAGGCTTYFDMPLNSIPPTVTREALDAKAELARQKSAVDFALWGGLVP---GNLEHLRELA-EAGVIGFKAFMSNS 153 (451)
T ss_pred HHHHHhCCEEEEEECCCCCCCCCCcHHHHHHHHHHhCcCceEeEEEEecccc---cCHHHHHHHH-HcCCcEEEEEcccc
Confidence 9999999999999995 22 1223344454444443 346788887644322 2356677776 78999999998653
Q ss_pred C---CccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCC
Q 014320 208 G---SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNT 284 (427)
Q Consensus 208 ~---~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~ 284 (427)
+ ....++..+.++++.+++.|.++.+|+|+++.+....+.+...|..+.+.|+..+|..+|..++.+.+.++++.|+
T Consensus 154 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~e~~~~~~~~~~~~~~~g~~~~~~~~~~~P~~~E~~~v~~~l~la~~~g~ 233 (451)
T PRK06189 154 GTDEFRSSDDLTLYEGMKEIAALGKILALHAESDALTRHLTTQARQQGKTDVRDYLESRPVVAELEAVQRALLYAQETGC 233 (451)
T ss_pred CCCCcCcCCHHHHHHHHHHHHhcCCeEEEECCChHHHHHHHHHHHhcCCCChhHccccCCHHHHHHHHHHHHHHHHHhCC
Confidence 2 2345778899999999999999999999988766665667778888888899999999999999999999999999
Q ss_pred CEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEE
Q 014320 285 PLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLV 364 (427)
Q Consensus 285 ~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~l 364 (427)
++|++|+++.++++.++++++.|+++++|+||||++++++.+.. + +..++++||+|++.++++||+++++|++++|
T Consensus 234 ~~hi~HiSt~~~~~~i~~~k~~g~~vt~ev~ph~L~l~~~~~~~--~--~~~~~~~Pplr~~~~~~~L~~~l~~G~i~~i 309 (451)
T PRK06189 234 PLHFVHISSGKAVALIAEAKKRGVDVSVETCPHYLLFTEEDFER--I--GAVAKCAPPLRSRSQKEELWRGLLAGEIDMI 309 (451)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCcEEEEeCHHHhhcCHhHhhC--c--CCceEEeCCCCChhhHHHHHHHHhCCCceEE
Confidence 99999999999999999999999999999999999999887742 2 3688999999999999999999999999999
Q ss_pred ecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 365 GTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 365 gSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
+|||+|++...|. ..+|+.+++|++|+|+.+|++|+.++.+++++++++++++|.||||+
T Consensus 310 ~sDh~p~~~~~K~--~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~~~~~~~t~npA~~ 369 (451)
T PRK06189 310 SSDHSPCPPELKE--GDDFFLVWGGISGGQSTLLVMLTEGYIERGIPLETIARLLATNPAKR 369 (451)
T ss_pred ECCCCCCCHHHcC--cCCcccCCCCceeHHHHHHHHHHHHHhcCCCCHHHHHHHHhhhHHHH
Confidence 9999999988774 24899999999999999999998777888899999999999999985
|
|
| >PRK08044 allantoinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-53 Score=417.57 Aligned_cols=360 Identities=27% Similarity=0.376 Sum_probs=308.1
Q ss_pred CccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHHHH
Q 014320 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~ 131 (427)
+.+++|+|++|++.+....++|+|+||+|++|++... .+.++||+.|++++|||||+|+|+..+ +....+++.+++
T Consensus 2 ~~~~~i~n~~vi~~~~~~~~~i~I~dg~I~~i~~~~~--~~~~~iD~~G~~v~Pg~iD~h~h~~~~--~~~~~e~~~~~~ 77 (449)
T PRK08044 2 SFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDLG--DAKEVMDASGLVVSPGMVDAHTHISEP--GRSHWEGYETGT 77 (449)
T ss_pred CceEEEECcEEEcCCCCEEEEEEEECCEEEEecCCCC--CCCeEEECCCCEEcCCeeccccccCCC--CccccccHHHHH
Confidence 4578999999998766667899999999999986432 356899999999999999999999887 555688899999
Q ss_pred HHHHcCCceEEecCcC-CCC-CcHHHHHHHHHHHh-ccccceeceeccccCCChhhHHHHHHHHHHcCCCeEEEEEecCC
Q 014320 132 AAALAGGTTMHIDFVI-PIN-GSLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKG 208 (427)
Q Consensus 132 ~~~l~~GvTtv~d~~~-~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~~~~ 208 (427)
++++++||||++|+.. ..+ ....+.++...+.. .++.+++.++++.... ...++.++. +.|+.+||+|+.+.+
T Consensus 78 ~aa~~gGvTtv~d~~~~~~p~~~~~~~~~~~~~~~~~~s~vd~~~~~~~~~~---~~~ei~~l~-~~gv~~fk~~~~~~~ 153 (449)
T PRK08044 78 RAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSY---NLDRLHELD-EVGVVGFKCFVATCG 153 (449)
T ss_pred HHHHhCCceEEECCccCCCCCCCcHHHHHHHHHHhccCCeeeEEEEeeeCCC---CHHHHHHHH-HcCceEEEEEecccC
Confidence 9999999999999962 212 24556666555554 3577888776655432 356677776 689999999987532
Q ss_pred C-------ccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHh
Q 014320 209 S-------FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEF 281 (427)
Q Consensus 209 ~-------~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~ 281 (427)
. ...++..+.+.++.+++.|.++.+|+|+.+.+....+.+.+.|...++.|+..+|..+|..++.+.+.++++
T Consensus 154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~l~~~~~~~~~~~G~~~~~~~~~~~P~~~E~~~v~r~~~lA~~ 233 (449)
T PRK08044 154 DRGIDNDFRDVNDWQFYKGAQKLGELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKV 233 (449)
T ss_pred cccccCCccCcCHHHHHHHHHHHHhcCCEEEEecCCHHHHHHHHHHHHhcCCCChhhccccCCHHHHHHHHHHHHHHHHH
Confidence 1 234677888999999999999999999998876555667788988999999999999999999999999999
Q ss_pred cCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCc
Q 014320 282 VNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGIL 361 (427)
Q Consensus 282 ~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~ 361 (427)
.|+++|++|+++..+++.++++++.|.++++++|||||+++++.+.. + +..++++||+|++.++++||+++++|++
T Consensus 234 ~g~~vhi~HiSt~~~~~~i~~ak~~G~~it~e~~~h~L~l~~~~~~~--~--~~~~k~~PPlr~~~d~~aL~~~l~~G~i 309 (449)
T PRK08044 234 AGCRLHVCHISSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEE--I--GTLAKCSPPIRDLENQKGMWEKLFNGEI 309 (449)
T ss_pred hCCCEEEEeCCCHHHHHHHHHHHHCCCCEEEEcChhhhcccHHHhhC--C--CCcEEEcCCCCChHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999988743 2 4689999999999999999999999999
Q ss_pred eEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 362 QLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 362 ~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
++|+|||+||+.++|. .+|+.++.|++|+++.+|++++.++++++++++++++++|.||||+
T Consensus 310 d~i~sDH~P~~~~~K~---~~~~~~~~g~~g~e~~l~~~~~~~v~~~~l~~~~~v~~~s~npA~~ 371 (449)
T PRK08044 310 DCLVSDHSPCPPEMKA---GNIMEAWGGIAGLQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADI 371 (449)
T ss_pred eEEEcCCCCCChHHcc---CChhhCCCCceEHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhHHHH
Confidence 9999999999988775 4899999999999999999998888888999999999999999985
|
|
| >TIGR03178 allantoinase allantoinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-52 Score=416.09 Aligned_cols=360 Identities=30% Similarity=0.427 Sum_probs=307.9
Q ss_pred cEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHHHHHH
Q 014320 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAA 133 (427)
Q Consensus 54 ~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~~ 133 (427)
|++|+|++|+++++...++|+|+||||++|++... +.+.++||++|++|+|||||+|+|+..+ +...++++.+++++
T Consensus 1 dl~i~~~~v~~~~~~~~~~v~i~dg~I~~i~~~~~-~~~~~~id~~g~~v~PG~ID~H~H~~~~--~~~~~~~~~~~~~~ 77 (443)
T TIGR03178 1 DLIIRGGRVILPNGEREADVGVKGGKIAAIGPDIL-GPAAKIIDAGGLVVFPGVVDTHVHINEP--GRTEWEGFETGTRA 77 (443)
T ss_pred CEEEECcEEECCCCceEEEEEEECCEEEEeeCCCC-CCCCeEEECCCCEEeccEeccccccCCC--CccccchHHHHHHH
Confidence 47899999999887778999999999999987532 3456899999999999999999999876 55667889999999
Q ss_pred HHcCCceEEecCc-CCCCC-cHHHHHHHHHHHhc-cccceeceeccccCCChhhHHHHHHHHHHcCCCeEEEEEecCCC-
Q 014320 134 ALAGGTTMHIDFV-IPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGS- 209 (427)
Q Consensus 134 ~l~~GvTtv~d~~-~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~~~~~- 209 (427)
++++||||++||. ...+. ...+.++...+... ...++++++.+.. .+..+++.++. +.|+.++|+|+++.+.
T Consensus 78 ~~~gGvTtv~dmp~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~~i~~~~-~~G~~~ik~~~~~~~~~ 153 (443)
T TIGR03178 78 AAAGGITTYIDMPLNSIPATTTRASLEAKFEAAKGKLAVDVGFWGGLV---PYNLDDLRELD-EAGVVGFKAFLSPSGDD 153 (443)
T ss_pred HHcCCeEEEEECCCCCCCCCCcHHHHHHHHHHhccCCceeEEEEeccC---CCCHHHHHHHH-HCCCcEEEEEecccCCC
Confidence 9999999999996 22222 34445555544443 4577777664433 23355677766 6899999999876433
Q ss_pred --ccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEE
Q 014320 210 --FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287 (427)
Q Consensus 210 --~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~ 287 (427)
...+++.+.++++.++++|+++++|+|+.+.+....+.+...|..+.+.|...+|..+|..++.+.++++++.++++|
T Consensus 154 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~ae~~~~~~~~~la~~~g~~vh 233 (443)
T TIGR03178 154 EFPHVDDWQLYKGMRELARLGQLLLVHAENPAITSALGEEAPPQGGVGADAYLASRPVFAEVEAIRRTLALAKVTGCRVH 233 (443)
T ss_pred CcccCCHHHHHHHHHHHHhcCCeEEEeccChHHHHHHHHHHHhcCCCChhHhcCcCCHHHHHHHHHHHHHHHHHhCCCEE
Confidence 356889999999999999999999999998887777778899999999999999999999999999999999999999
Q ss_pred EEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecC
Q 014320 288 VVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTD 367 (427)
Q Consensus 288 i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD 367 (427)
++|+++.++++.++++++.|+++++++||||++++++.+.. .+..++++||+|++.++++||+++++|.+++|+||
T Consensus 234 i~Hiss~~~~~~i~~~~~~g~~it~e~~ph~l~l~~~~~~~----~~~~~~~~Pplr~~~~~~~l~~~l~~G~i~~i~SD 309 (443)
T TIGR03178 234 VVHLSSAEAVELITEAKQEGLDVTVETCPHYLTLTAEEVPD----GGTLAKCAPPIRDLANQEGLWEALLNGLIDCVVSD 309 (443)
T ss_pred EEeCCCHHHHHHHHHHHHCCCcEEEEECccceEecHHHhhC----cCcceEEcCCCCChHHHHHHHHHHHcCCccEEeCC
Confidence 99999999999999999999999999999999999887743 24688999999999999999999999999999999
Q ss_pred CCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 368 HCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 368 ~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
|+|++...|. ..+|+.+++|++|+|+.+|++++.++.+++++++++++++|.|||++
T Consensus 310 h~p~~~~~K~--~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~~~~~~~t~~pA~~ 366 (443)
T TIGR03178 310 HSPCTPDLKR--AGDFFKAWGGIAGLQSTLDVMFDEAVQKRGLPLEDIARLMATNPAKR 366 (443)
T ss_pred CCCCChHHcC--cCChhhCCCCeeEHHHhHHHHHHHHHHhcCCCHHHHHHHHhHHHHHH
Confidence 9999987773 25899999999999999999997777888999999999999999985
|
This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases. |
| >cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-51 Score=409.72 Aligned_cols=363 Identities=29% Similarity=0.392 Sum_probs=307.8
Q ss_pred cEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHHHHHH
Q 014320 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAA 133 (427)
Q Consensus 54 ~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~~ 133 (427)
|++|+|++|++++...+++|+|+||||++|++....+.+.++||++|++|+|||||+|+|+..+ +...++++.+.+++
T Consensus 1 dl~i~~~~v~~~~~~~~~~v~I~~g~I~~i~~~~~~~~~~~~iDa~G~~v~PG~ID~H~H~~~~--~~~~~e~~~~~s~a 78 (447)
T cd01315 1 DLVIKNGRVVTPDGVREADIAVKGGKIAAIGPDIANTEAEEVIDAGGLVVMPGLIDTHVHINEP--GRTEWEGFETGTKA 78 (447)
T ss_pred CEEEECCEEECCCCceEeEEEEECCEEEEEeCCCCCCCCCeEEECCCCEEeccEeeceeccCCC--CccccccHHHHHHH
Confidence 5799999999987777899999999999999764323467899999999999999999999876 55567888899999
Q ss_pred HHcCCceEEecCcC-C-CCCcHHHHHHHHHHHhc-cccceeceeccccCCChhhHHHHHHHHHHcCCCeEEEEEecCCC-
Q 014320 134 ALAGGTTMHIDFVI-P-INGSLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGS- 209 (427)
Q Consensus 134 ~l~~GvTtv~d~~~-~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~~~~~- 209 (427)
++++||||++||.. . +.....+.++...+... ...++++++..... ...++++++. +.|+.++|+|+++++.
T Consensus 79 al~gGvTtv~d~p~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~ei~~l~-~~G~~giKv~~~~~~~~ 154 (447)
T cd01315 79 AAAGGITTIIDMPLNSIPPTTTVENLEAKLEAAQGKLHVDVGFWGGLVP---GNLDQLRPLD-EAGVVGFKCFLCPSGVD 154 (447)
T ss_pred HHhCCceEEEeCCCCCCCCcCCHHHHHHHHHHhccCceeeEEEEEeecC---CCHHHHHHHH-HcCCcEEEEEecccCCC
Confidence 99999999999962 2 12234555655555543 36777776543322 2355667766 6799999999875432
Q ss_pred --ccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEE
Q 014320 210 --FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287 (427)
Q Consensus 210 --~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~ 287 (427)
+..+.+.+.++++.++++|+++.+|+|+.+.+..........|..+...+...+|..+|..++.+.++++++.|+++|
T Consensus 155 ~~~~~~~~~l~~~~~~a~~~g~~v~vH~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~~~~~~~la~~~g~~ih 234 (447)
T cd01315 155 EFPAVDDEQLEEAMKELAKTGSVLAVHAENPEITEALQEQAKAKGKRDYRDYLASRPVFTEVEAIQRILLLAKETGCRLH 234 (447)
T ss_pred CcccCCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHhHhhcCCCChHHhhccCCHHHHHHHHHHHHHHHHHhCCCEE
Confidence 236889999999999999999999999988777666666777888888888899999999999999999999999999
Q ss_pred EEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecC
Q 014320 288 VVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTD 367 (427)
Q Consensus 288 i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD 367 (427)
++|+++..+++.++.+++.|.++++++||||+.++++.+.. .+..++++||+|++.++++||+++++|.+++|+||
T Consensus 235 i~h~s~~~~~~~i~~~~~~g~~i~~e~~~h~l~~~~~~~~~----~~~~~~~~Pplr~~~~~~~l~~~l~~g~i~~i~SD 310 (447)
T cd01315 235 IVHLSSAEAVPLIREARAEGVDVTVETCPHYLTFTAEDVPD----GGTEFKCAPPIRDAANQEQLWEALENGDIDMVVSD 310 (447)
T ss_pred EEeCCCHHHHHHHHHHHHCCCceEEEeccccEEEcHHHccC----CCCceEECCCCCChHHHHHHHHHHhCCceeEEeCC
Confidence 99999999999999999999999999999999999888743 24689999999999999999999999999999999
Q ss_pred CCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 368 HCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 368 ~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
|+|++.++|..+..+|+.++.|++|+++.++.+++.++++++++++++++++|.|||++
T Consensus 311 h~p~~~~~k~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~pa~~ 369 (447)
T cd01315 311 HSPCTPELKLLGKGDFFKAWGGISGLQLGLPVMLTEAVNKRGLSLEDIARLMCENPAKL 369 (447)
T ss_pred CCCCCHHHhccCCCChhhCCCCeeEHHHhHHHHHHHHHHcCCCCHHHHHHHHhHHHHHH
Confidence 99999888864456899999999999999999997777788999999999999999985
|
But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid. |
| >PRK02382 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-51 Score=407.53 Aligned_cols=352 Identities=26% Similarity=0.406 Sum_probs=290.4
Q ss_pred ccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHHHHH
Q 014320 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA 132 (427)
Q Consensus 53 ~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~ 132 (427)
.|++|+|++|++......++|+|+||||++|++....+.+.++||++|++|+|||||+|+|+..+ +....+++.+.++
T Consensus 2 ~dl~i~n~~v~~~~~~~~~~v~I~dg~I~~i~~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~--g~~~~e~~~~~~~ 79 (443)
T PRK02382 2 RDALLKDGRVYYNNSLQPRDVRIDGGKITAVGKDLDGSSSEEVIDARGMLLLPGGIDVHVHFREP--GYTHKETWYTGSR 79 (443)
T ss_pred ceEEEECCEEEeCCCceEEEEEEECCEEEEecCCCCCCCCCeEEECCCCEEcCCEeeeeeeccCC--CCCchhhHHHHHH
Confidence 57899999999876667899999999999998654333346899999999999999999999876 6667788899999
Q ss_pred HHHcCCceEEecCcCCCCC-cHHHHHHHHHHHh-ccccceeceeccccCCChhhHHHHHHHHHHcCCCeE-EEEEec-CC
Q 014320 133 AALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSF-KFFMAY-KG 208 (427)
Q Consensus 133 ~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~i-k~~~~~-~~ 208 (427)
+++.+||||++++....+. ...+.++...+.. .++.+++++++... ...+++.++. ..|+..+ |+|+.+ .+
T Consensus 80 aa~~gGvTtv~~~~~t~p~~~~~~~~~~~~~~a~~~s~v~~~~~~~~~----~~~~~l~~l~-~~gv~~~gkv~~~~~~~ 154 (443)
T PRK02382 80 SAAAGGVTTVVDQPNTDPPTVDGESFDEKAELAARKSIVDFGINGGVT----GNWDPLESLW-ERGVFALGEIFMADSTG 154 (443)
T ss_pred HHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhCcCceEEEEEEeeec----cchhhHHHHH-hcCccceeEEEEEecCC
Confidence 9999999999999754333 4445555554444 34567776654332 1244566666 4588877 888754 23
Q ss_pred CccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEE
Q 014320 209 SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV 288 (427)
Q Consensus 209 ~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i 288 (427)
....+++.+.++++.+++.|+++.+|+|+.+....... ...|...++.|...+|..+|..++.+.+.++++.|+++|+
T Consensus 155 ~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~--~~~g~~~~~~~~~~~p~~~E~~av~~~~~la~~~g~~~hi 232 (443)
T PRK02382 155 GMGIDEELFEEALAEAARLGVLATVHAEDEDLFDELAK--LLKGDADADAWSAYRPAAAEAAAVERALEVASETGARIHI 232 (443)
T ss_pred CcccCHHHHHHHHHHHHhcCCeEEEecCCHHHHHHhhH--hhcCCCCHhhCCCcCCHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 34567889999999999999999999998866443221 2346677788888899999999999999999999999999
Q ss_pred EcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCC
Q 014320 289 VHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDH 368 (427)
Q Consensus 289 ~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~ 368 (427)
+|+++..+++.+++++ |++++|||||+++++++.. + +..+|++||+|++.++++||+++++|++++|+|||
T Consensus 233 ~h~ss~~~~~~i~~~~-----vt~ev~ph~L~l~~~~~~~--~--~~~~k~~PPlr~~~d~~aL~~~l~~g~i~~i~sDh 303 (443)
T PRK02382 233 AHISTPEGVDAARREG-----ITCEVTPHHLFLSRRDWER--L--GTFGKMNPPLRSEKRREALWERLNDGTIDVVASDH 303 (443)
T ss_pred EECCCHHHHHHHHHCC-----cEEEEchhhhhcCHHHHhc--c--CceEEEcCCCCChHHHHHHHHHHhCCCCCEEEcCC
Confidence 9999999999988654 8999999999999887732 1 35789999999999999999999999999999999
Q ss_pred CCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 369 CAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 369 ~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
+|++.++|.. +|+.+|+|++|+|+.+|+++ .++.+++++++++++++|.|||++
T Consensus 304 ~P~~~~~K~~---~~~~~~~G~~g~e~~~~~~~-~~~~~~~~~l~~~~~~~t~~pA~~ 357 (443)
T PRK02382 304 APHTREEKDA---DIWDAPSGVPGVETMLPLLL-AAVRKNRLPLERVRDVTAANPARI 357 (443)
T ss_pred CCCCHHHhcC---ChhhCCCCcccHHHHHHHHH-HHHHcCCCCHHHHHHHHhHHHHHH
Confidence 9999888853 89999999999999999999 578888999999999999999985
|
|
| >PRK09060 dihydroorotase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=401.79 Aligned_cols=352 Identities=26% Similarity=0.363 Sum_probs=288.0
Q ss_pred CccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHHHH
Q 014320 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~ 131 (427)
+.+++|+|++|++++....++|+|+||+|++|++... +++.++||++|++|+|||||+|+|+..+ +..+++++.+.+
T Consensus 4 ~~d~~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~-~~~~~~iD~~G~~v~PG~ID~HvH~~~~--~~~~~e~~~t~~ 80 (444)
T PRK09060 4 TFDLILKGGTVVNPDGEGRADIGIRDGRIAAIGDLSG-ASAGEVIDCRGLHVLPGVIDSQVHFREP--GLEHKEDLETGS 80 (444)
T ss_pred cCcEEEECCEEECCCCCeeeEEEEECCEEEEecCCCC-CCCceEEECCCCEEccCEEeccccccCC--CCCccchHHHHH
Confidence 4578999999999877667899999999999986432 2346899999999999999999999876 666789999999
Q ss_pred HHHHcCCceEEecCcCCCCC-cHHHHHHHHHHHhc-cccceeceeccccCCChhhHHHHHHHHHHcCCCeEEEEEecC--
Q 014320 132 AAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYK-- 207 (427)
Q Consensus 132 ~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~~~-- 207 (427)
++++.+||||++|+....+. ...+.+....+... +.+++++++......+. +++.++....|+.++|+|+++.
T Consensus 81 ~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~---~~l~el~~~~gv~g~k~fm~~~~~ 157 (444)
T PRK09060 81 RAAVLGGVTAVFEMPNTNPLTTTAEALADKLARARHRMHCDFAFYVGGTRDNA---DELAELERLPGCAGIKVFMGSSTG 157 (444)
T ss_pred HHHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhcccceeeEEEEeccCCCCH---HHHHHHHhhcCceEEEEEeccCCC
Confidence 99999999999999754322 45556655555444 36788887765443332 3455544345888999998642
Q ss_pred CCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEE
Q 014320 208 GSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287 (427)
Q Consensus 208 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~ 287 (427)
.....++..+.++++. .|.++.+|+|+.+.+... +.+...| .+..|+..+|..+|..++.++++++++.|+++|
T Consensus 158 ~~~~~d~~~l~~~~~~---~~~~v~~H~E~~~l~~~~-~~~~~~g--~~~~~~~~~p~~aE~~av~~~~~la~~~~~~lh 231 (444)
T PRK09060 158 DLLVEDDEGLRRILRN---GRRRAAFHSEDEYRLRER-KGLRVEG--DPSSHPVWRDEEAALLATRRLVRLARETGRRIH 231 (444)
T ss_pred CcccCCHHHHHHHHHh---CCCeEEEECCCHHHHHHH-HHHHhcC--CcccccccCCHHHHHHHHHHHHHHHHHHCCCEE
Confidence 2223356667776544 489999999998776544 4455677 677888899999999999999999999999999
Q ss_pred EEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCccc-ccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEec
Q 014320 288 VVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSW-LWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGT 366 (427)
Q Consensus 288 i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~-~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgS 366 (427)
++|+++.++++.++++++ .+++|+||||++++++. +.. .+..++++||+|++.++++||+++++|++++++|
T Consensus 232 i~h~st~~~v~~i~~~~~---~vt~ev~ph~l~l~~~~~~~~----~~~~~k~~PPlr~~~~~~~l~~al~~G~id~i~s 304 (444)
T PRK09060 232 VLHVSTAEEIDFLADHKD---VATVEVTPHHLTLAAPECYER----LGTLAQMNPPIRDARHRDGLWRGVRQGVVDVLGS 304 (444)
T ss_pred EEeCCCHHHHHHHHHhCC---CeEEEeChHHhccCchhhccc----CCceEEEeCCCCCHHHHHHHHHHHhCCCccEEec
Confidence 999999999999988765 38999999999999876 422 2368999999999999999999999999999999
Q ss_pred CCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 367 DHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 367 D~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
||+||+..+|.. +|+.+++|++|+|+.+|+++. .+.++.++++++++++|.||||+
T Consensus 305 Dh~p~~~~~k~~---~~~~~~~G~~g~e~~~~l~~~-~v~~g~l~~~~~~~~~s~~pa~~ 360 (444)
T PRK09060 305 DHAPHTLEEKAK---PYPASPSGMTGVQTLVPIMLD-HVNAGRLSLERFVDLTSAGPARI 360 (444)
T ss_pred CCCCCCHHHhcC---CcccCCCCcccHHHHHHHHHH-HHHcCCCCHHHHHHHHhHhHHHH
Confidence 999999888753 899999999999999999994 68888899999999999999986
|
|
| >PRK07575 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-50 Score=397.12 Aligned_cols=353 Identities=25% Similarity=0.370 Sum_probs=280.9
Q ss_pred CCccEEEECcEEEcCCC-ceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHH
Q 014320 51 SSSKILIKGGTVVNAHH-QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS 129 (427)
Q Consensus 51 ~~~~~~i~~~~i~~~~~-~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~ 129 (427)
||++++|+|++|+++++ ...++|.|+||||++|++....+.+.++||++|++|+|||||+|+|+..+ +..+++++.+
T Consensus 1 ~~~~~~i~~~~i~~~~~~~~~~~I~I~dg~I~~ig~~~~~~~~~~vid~~g~~v~PG~ID~H~H~~~~--~~~~~e~~~~ 78 (438)
T PRK07575 1 MMMSLLIRNARILLPSGELLLGDVLVEDGKIVAIAPEISATAVDTVIDAEGLTLLPGVIDPQVHFREP--GLEHKEDLFT 78 (438)
T ss_pred CcceEEEECCEEECCCCCEEeeeEEEECCEEEEecCCCCCCCCCeEEECCCCEEcccEEEeeeccCCC--CCcCcchHHH
Confidence 35678999999998765 45689999999999998754322235899999999999999999998876 6678899999
Q ss_pred HHHHHHcCCceEEecCcCCCCC-cHHHHHHHHH-HHhccccceeceeccccCCChhhHHHHHHHHHHcCCCeEEEEEecC
Q 014320 130 GQAAALAGGTTMHIDFVIPING-SLTAGFEAYE-KKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYK 207 (427)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~~~ 207 (427)
++++++++||||++||....+. ...+.+.... .......++++++.+... +.+.++.. ..++.++|.|+...
T Consensus 79 ~~~aa~~gGvTt~~dmp~~~p~~~~~~~~~~~~~~a~~~~~v~~~~~~~~~~---~~l~~l~~---~~~~~g~~~f~~~~ 152 (438)
T PRK07575 79 ASRACAKGGVTSFLEMPNTKPLTTTQAALDDKLARAAEKCVVNYGFFIGATP---DNLPELLT---ANPTCGIKIFMGSS 152 (438)
T ss_pred HHHHHHhCCEEEEEECCCCCCCCCcHHHHHHHHHHhccCcEEEEEEEccccc---cCHHHHHH---hhCCeEEEEEEeeC
Confidence 9999999999999999754322 3444444433 333457888888765432 22333332 23667889887432
Q ss_pred C-CccC-CHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCC
Q 014320 208 G-SFMI-NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP 285 (427)
Q Consensus 208 ~-~~~~-~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~ 285 (427)
. .... +...+++.+ ++.+.++.+|+|+.+.+.... ....|...+..|...+|+.+|..++.+.++++++.|++
T Consensus 153 ~~~~~~~~~~~~~~~~---~~~~~~v~~h~e~~~l~~~~~--~~~~g~~~~~~~~~~~p~~aE~~av~~~~~la~~~g~~ 227 (438)
T PRK07575 153 HGPLLVDEEAALERIF---AEGTRLIAVHAEDQARIRARR--AEFAGISDPADHSQIQDEEAALLATRLALKLSKKYQRR 227 (438)
T ss_pred CCCcccCcHHHHHHHH---HhCCCEEEEeCcChHHHHhhh--HhhccCcCcccccccCcHHHHHHHHHHHHHHHHHHCCC
Confidence 1 1112 334444433 356999999999987543221 23356667888888999999999999999999999999
Q ss_pred EEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEe
Q 014320 286 LYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVG 365 (427)
Q Consensus 286 ~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lg 365 (427)
+|++|+++.++++.+++++ +..+++++|||||+++++++.. + +..+|++||+|+++++++||+++++|++++|+
T Consensus 228 lhi~HiSt~~~v~~i~~~k--~~~vt~ev~phhL~l~~~~~~~--~--~~~~k~~PPLR~~~d~~~L~~~l~~G~id~i~ 301 (438)
T PRK07575 228 LHILHLSTAIEAELLRQDK--PSWVTAEVTPQHLLLNTDAYER--I--GTLAQMNPPLRSPEDNEALWQALRDGVIDFIA 301 (438)
T ss_pred EEEEECCCHHHHHHHHHhc--CCCEEEEEchhhheeCHHHHhC--C--CceEEEeCCCCCHHHHHHHHHHHhCCCCCEEe
Confidence 9999999999999998876 4789999999999999988642 1 36899999999999999999999999999999
Q ss_pred cCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 366 TDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 366 SD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
|||+|++.++|. .+|+.+++|++|+|+.+|++|+. +.++++|++++++++|.||||+
T Consensus 302 sDh~p~~~~~k~---~~~~~~~~G~~g~e~~l~~l~~~-~~~~~lsl~~~~~~~s~npAk~ 358 (438)
T PRK07575 302 TDHAPHTLEEKA---QPYPNSPSGMPGVETSLPLMLTA-AMRGKCTVAQVVRWMSTAVARA 358 (438)
T ss_pred cCCCCCCHHHcc---CCcccCCCCcccHHHHHHHHHHH-HhcCCCCHHHHHHHHhhhHHHH
Confidence 999999988885 38999999999999999999965 5677899999999999999985
|
|
| >TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-49 Score=390.62 Aligned_cols=341 Identities=26% Similarity=0.366 Sum_probs=282.4
Q ss_pred eeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCC
Q 014320 69 QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIP 148 (427)
Q Consensus 69 ~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~ 148 (427)
..++|+|+||||++|++.. .+.+.++||++|++|+|||||+|+|+..+ +..+.+++.+.++.++.+||||++++...
T Consensus 4 ~~~~v~I~~g~I~~i~~~~-~~~~~~~ida~g~~v~PG~ID~H~H~~~~--~~~~~~~~~~~~~~~~~~GvTtv~~~~~t 80 (411)
T TIGR00857 4 TEVDILVEGGRIKKIGKLR-IPPDAEVIDAKGLLVLPGFIDLHVHLRDP--GEEYKEDIESGSKAAAHGGFTTVADMPNT 80 (411)
T ss_pred EEEEEEEECCEEEEeeccC-CCCCCeEEECCCCEEecCEEEcccCCCCC--CCccHhHHHHHHHHHHhCCeEEEEEecCC
Confidence 4678999999999997522 23345799999999999999999999765 45677889999999999999999998654
Q ss_pred CCC-cHHHHHHHHHHHhc-cccceeceeccccCCC-hhhHHHHHHHHHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHH
Q 014320 149 ING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWD-EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCK 225 (427)
Q Consensus 149 ~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~ 225 (427)
.+. ...+.++...+... ...+++.++.+..... .+.++++.++. ..|+.+ ++|..+. .+..++..+.++++.++
T Consensus 81 ~p~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~~~~l~e~~~l~-~~Gv~g-~~f~~~~-~~~~~~~~l~~~~~~a~ 157 (411)
T TIGR00857 81 KPPIDTPETLEWKLQRLKKVSLVDVHLYGGVTQGNQGKELTEAYELK-EAGAVG-RMFTDDG-SEVQDILSMRRALEYAA 157 (411)
T ss_pred CCCCCcHHHHHHHHHHhccCCcccEEEEEEEecCCccccHHHHHHHH-HCCcEE-EEEEeCC-cccCCHHHHHHHHHHHH
Confidence 322 44556665555543 4678887776665432 22356666666 578877 3333332 23467889999999999
Q ss_pred HcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhh
Q 014320 226 SLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARK 305 (427)
Q Consensus 226 ~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~ 305 (427)
++|+++.+|+|+++.+... ....|..+++.|...||..+|..++.+++.+++..++++|++|+++.++++.++.+|+
T Consensus 158 ~~g~~v~iH~E~~~l~~~~---~~~~g~~~~~~~~~~~p~~aE~~ai~~~~~la~~~~~~~~i~Hvs~~~~l~~i~~a~~ 234 (411)
T TIGR00857 158 IAGVPIALHAEDPDLIYGG---VMHEGPSAAQLGLPARPPEAEEVAVARLLELAKHAGCPVHICHISTKESLELIVKAKS 234 (411)
T ss_pred HcCCEEEEecCCHHHHhhh---hhcCCcccHhhCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHHHHH
Confidence 9999999999998765432 4556777888999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCcc
Q 014320 306 AGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRK 385 (427)
Q Consensus 306 ~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~ 385 (427)
+|++|++|+|||||+++.+.+.+ .+.+++++||+|++.++++||+++++|++++|+|||+||+..+|. .+|+.
T Consensus 235 ~g~~v~~ev~ph~L~~~~~~~~~----~~~~~k~~Pplr~~~~~~~L~~~l~~g~i~~i~sDh~p~~~~~k~---~~~~~ 307 (411)
T TIGR00857 235 QGIKITAEVTPHHLLLSEEDVAR----LDGNGKVNPPLREKEDRLALIEGLKDGIIDIIATDHAPHTLEEKT---KEFAA 307 (411)
T ss_pred cCCcEEEeechhhheecHHHHhC----CCccEEEcCCCCCHHHHHHHHHHHhcCCCcEEEcCCCCCChHHcc---CCHhh
Confidence 99999999999999999887743 237899999999999999999999999999999999999987775 38999
Q ss_pred CCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 386 IPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 386 ~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
+++|++|+|+.+|+++ .++.+++++++++++++|.|||++
T Consensus 308 ~~~G~~g~e~~~~~~~-~~~~~~~~~~~~~~~~~t~~pa~~ 347 (411)
T TIGR00857 308 APPGIPGLETALPLLL-QLLVKGLISLKDLIRMLSINPARI 347 (411)
T ss_pred CCCCceeHHHHHHHHH-HHHHhCCCCHHHHHHHHhHHHHHH
Confidence 9999999999999999 456667899999999999999985
|
All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase. |
| >PRK09357 pyrC dihydroorotase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-49 Score=391.99 Aligned_cols=355 Identities=27% Similarity=0.386 Sum_probs=287.5
Q ss_pred cEEEECcEEEcCCC-ceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHHHHH
Q 014320 54 KILIKGGTVVNAHH-QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA 132 (427)
Q Consensus 54 ~~~i~~~~i~~~~~-~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~ 132 (427)
+++|+|++|++++. ..+++|.|+||+|++|++... +++.++||++|++|+|||||+|+|+..+ +..+.+++..+++
T Consensus 2 ~~~i~~~~v~~~~~~~~~~~I~I~dg~I~~i~~~~~-~~~~~~iD~~g~~v~PG~ID~H~H~~~~--~~~~~e~~~~~~~ 78 (423)
T PRK09357 2 MILIKNGRVIDPKGLDEVADVLIDDGKIAAIGENIE-AEGAEVIDATGLVVAPGLVDLHVHLREP--GQEDKETIETGSR 78 (423)
T ss_pred cEEEEeEEEECCCCCcceeeEEEECCEEEEeeCCCC-CCCCeEEECCCCEEeCCEEecccccCCC--CccccccHHHHHH
Confidence 37999999998743 567899999999999986422 2356899999999999999999999776 5677899999999
Q ss_pred HHHcCCceEEecCcCCCCC-cHHHHHHHHHHHhc-cccceeceeccccC-CChhhHHHHHHHHHHcCCCeEEEEEecCCC
Q 014320 133 AALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITK-WDEVVSDEMEVMVKEKGINSFKFFMAYKGS 209 (427)
Q Consensus 133 ~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~g~~~ik~~~~~~~~ 209 (427)
.++++||||++|+....+. ...+.++...+... ....++..++.... ..++.++++.++. ..|+..++ .++.
T Consensus 79 ~a~~~GvTt~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gv~~~~----~~~~ 153 (423)
T PRK09357 79 AAAAGGFTTVVAMPNTKPVIDTPEVVEYVLDRAKEAGLVDVLPVGAITKGLAGEELTEFGALK-EAGVVAFS----DDGI 153 (423)
T ss_pred HHHhCCCeEEEecCCCCCCCCcHHHHHHHHHHhccCCcccEEEEEEEEeCCCCccHHHHHHHH-hCCcEEEE----CCCc
Confidence 9999999999999754322 44455555555543 34455555433321 1223456666665 45654432 3455
Q ss_pred ccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEE
Q 014320 210 FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV 289 (427)
Q Consensus 210 ~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~ 289 (427)
+..+++.++++++.++++|+++++|+++.+.... .+.+.|....+.+...+|...|..++.+.+.++++.|+++|++
T Consensus 154 ~~~~~~~l~~~~~~a~~~g~~v~iH~ee~~~~~~---~~~~~g~~~~~~~~~~~p~~~E~~~i~~~~~la~~~g~~~hi~ 230 (423)
T PRK09357 154 PVQDARLMRRALEYAKALDLLIAQHCEDPSLTEG---GVMNEGEVSARLGLPGIPAVAEEVMIARDVLLAEATGARVHIC 230 (423)
T ss_pred ccCCHHHHHHHHHHHHhcCCEEEEeCCCHHHhhc---ccccCChhhHHhCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEE
Confidence 6678899999999999999999999987654321 1233444455566678999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCC
Q 014320 290 HVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHC 369 (427)
Q Consensus 290 H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~ 369 (427)
|+++.++++.++.++++|+.|++++||||++++++.+.. + +..++++||+|++.++++||+++++|+++++||||+
T Consensus 231 H~s~~~~~~~i~~a~~~g~~v~~e~~ph~L~~~~~~~~~--~--~~~~k~~Pplr~~~~~~~l~~~l~~G~~~~i~sDh~ 306 (423)
T PRK09357 231 HVSTAGSVELIRWAKALGIKVTAEVTPHHLLLTDEDLLT--Y--DPNYKVNPPLRTEEDREALIEGLKDGTIDAIATDHA 306 (423)
T ss_pred eCCCHHHHHHHHHHHHcCCCEEEEechHHheEcHHHHhC--c--CCceEECCCCCCHHHHHHHHHHHHcCCCeEEecCCC
Confidence 999999999999999999999999999999999987642 1 368899999999999999999999999999999999
Q ss_pred CCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 370 AFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 370 p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
|++..+|.. +|+.+++|++|+|+.++++++.++.++.++++++++++|.|||++
T Consensus 307 p~~~~~k~~---~~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~t~~~A~~ 360 (423)
T PRK09357 307 PHAREEKEC---EFEAAPFGITGLETALSLLYTTLVKTGLLDLEQLLEKMTINPARI 360 (423)
T ss_pred CCChHHccC---CHhhCCCCceEHHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHH
Confidence 999887753 799999999999999999997777788999999999999999985
|
|
| >PRK01211 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-50 Score=388.52 Aligned_cols=322 Identities=19% Similarity=0.278 Sum_probs=256.1
Q ss_pred EEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHHHHHHHHcCCce
Q 014320 61 TVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTT 140 (427)
Q Consensus 61 ~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvT 140 (427)
+++..+....++|+|+||||++|++.. .+.++||++| +|+|||||+|+|+..+ |..++|++.+++++|+++|||
T Consensus 6 ~~~~~~~~~~~di~I~dGkI~~i~~~~---~~~~~ida~g-~vlPG~ID~HvH~r~p--g~~~ked~~s~s~AAaaGGvT 79 (409)
T PRK01211 6 NFYYKGKFDYLEIEVEDGKIKSIKKDA---GNIGKKELKG-AILPAATDIHVHFRTP--GETEKEDFSTGTLSAIFGGTT 79 (409)
T ss_pred eeEEcCcEEEEEEEEECCEEEEecCCC---CCceEEEecc-EEcCCeEEeeeccCCC--CCcccCcHHHHHHHHHcCCcE
Confidence 445555566789999999999998653 2457899999 9999999999999998 888999999999999999999
Q ss_pred EEecCcCCCCC-cHHHHHHHHHHHhc-cccceeceeccccCCChhhHHHHHHHHHHcCCCeEEEEEecCCCccCCHHHHH
Q 014320 141 MHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLI 218 (427)
Q Consensus 141 tv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~~~~~l~ 218 (427)
|++||.+..+. ...+.++...+... .+.++++++........ + +. ..|+.++|+|+++... ........
T Consensus 80 tv~dmPnt~P~~~~~e~~~~~~~~a~~~s~vd~~~~~~~~~~~~----~---~~-~~g~~~~k~f~~~~~~-~~~~~~~~ 150 (409)
T PRK01211 80 FIMDMPNNNIPIKDYNAFSDKLGRVAPKAYVDFSLYSMETGNNA----L---IL-DERSIGLKVYMGGTTN-TNGTDIEG 150 (409)
T ss_pred EEEECCCCCCCCChHHHHHHHHHHhccCceeeEEEEeccCCchh----h---HH-hccCcEEEEEcCCCcC-CCccccCH
Confidence 99999764332 55666766665553 46889988866532221 1 22 4588899999764211 00001112
Q ss_pred HHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHH
Q 014320 219 EGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAME 298 (427)
Q Consensus 219 ~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~ 298 (427)
..++.+++.|.++.+|+|+.+.+.... ...+ ..+.|...+|..+|..++.+.+.++.+ ++|++|+++.+++
T Consensus 151 ~~l~~~~~~g~~v~~H~E~~~l~~~~~---~~~~--~~~~~~~~rP~~aE~~ai~~~~~la~~---~~hi~HvSt~~~~- 221 (409)
T PRK01211 151 GEIKKINEANIPVFFHAELSECLRKHQ---FESK--NLRDHDLARPIECEIKAVKYVKNLDLK---TKIIAHVSSIDVI- 221 (409)
T ss_pred HHHHHHHccCCEEEEeccChHHhhhhh---hCcc--hHhhCCCCCCHHHHHHHHHHHHHHhCC---CcEEEEecChhhc-
Confidence 244566689999999999987654321 1112 224567789999999999999999976 5999999998875
Q ss_pred HHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhc
Q 014320 299 EIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAF 378 (427)
Q Consensus 299 ~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~ 378 (427)
.+|++|+|||||+|+++.. .+..+|++||||++.|+++||+++++|.+++|+|||+||+.++|
T Consensus 222 ---------~~vt~Ev~phhL~l~~~~~------~~~~~kvnPPLRs~~d~~aL~~~l~dG~ID~i~SDHaP~~~~eK-- 284 (409)
T PRK01211 222 ---------GRFLREVTPHHLLLNDDMP------LGSYGKVNPPLRDRWTQERLLEEYISGRFDILSSDHAPHTEEDK-- 284 (409)
T ss_pred ---------CceEEEecHHHHccccccc------cCCceeEcCCCCCHHHHHHHHHHHhCCCCCEEeCCCCCCChhHh--
Confidence 2799999999999998752 13689999999999999999999999999999999999998776
Q ss_pred CCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 379 GIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 379 ~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
++|+.+++|++|+|+.+|++| .+++++++|++++++++|.||||+
T Consensus 285 --~~~~~a~~G~~gle~~lpl~~-~~v~~~~isl~~~v~~~s~nPAki 329 (409)
T PRK01211 285 --QEFEYAKSGIIGVETRVPLFL-ALVKKKILPLDVLYKTAIERPASL 329 (409)
T ss_pred --CCHhhCCCCCCcHHHHHHHHH-HHHHcCCCCHHHHHHHHHHHHHHH
Confidence 379999999999999999999 578889999999999999999985
|
|
| >PRK09236 dihydroorotase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-48 Score=385.45 Aligned_cols=357 Identities=25% Similarity=0.340 Sum_probs=289.6
Q ss_pred ccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHHHHH
Q 014320 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA 132 (427)
Q Consensus 53 ~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~ 132 (427)
.+++|+|++|++++.....+|+|+||+|++|++....+++.++||++|++|+|||||+|+|+..+ +....+++.+.++
T Consensus 2 ~~~~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~~~~~~~~id~~g~~v~PG~ID~HvH~~~~--~~~~~e~~~~~~~ 79 (444)
T PRK09236 2 KRILIKNARIVNEGKIFEGDVLIENGRIAKIASSISAKSADTVIDAAGRYLLPGMIDDQVHFREP--GLTHKGDIASESR 79 (444)
T ss_pred ccEEEECCEEEcCCCceEeEEEEECCEEEEecCCCCCCCCCeEEECCCCEECCCEEEcccccccC--cccccccHHHHHH
Confidence 46899999999976666789999999999998754322456899999999999999999999876 5556678888899
Q ss_pred HHHcCCceEEecCcCCCCC-cHHHHHHHHHHHh-ccccceeceeccccCCChhhHHHHHHHHHHcCCCeEEEEEecC-CC
Q 014320 133 AALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYK-GS 209 (427)
Q Consensus 133 ~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~~~-~~ 209 (427)
+++.+||||++||....+. ...+.+....+.. ....++++++.+... +..+++.++. ..|+.++|+|++.. +.
T Consensus 80 aa~~~GvTtv~d~p~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~e~~~l~-~~g~~g~k~~~~~~~~~ 155 (444)
T PRK09236 80 AAVAGGITSFMEMPNTNPPTTTLEALEAKYQIAAQRSLANYSFYFGATN---DNLDEIKRLD-PKRVCGVKVFMGASTGN 155 (444)
T ss_pred HHHhCCcEEEEeCCCCCCCcCcHHHHHHHHHHhccCeEEEEEEEeccCc---ccHHHHHHHH-HccCcEEEEEeccCCCC
Confidence 9999999999999754322 3345555444443 346778887764332 2356677766 67889999998642 21
Q ss_pred c-cCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHH-cCC-CCcccccccCCHHHHHHHHHHHHHHHHhcCCCE
Q 014320 210 F-MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIE-LGI-TGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286 (427)
Q Consensus 210 ~-~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~-~G~-~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~ 286 (427)
. ..+.+.++++++ ..++++.+|+|+.+.+......+.+ .|. ..+..|...||..+|..++.+.++++++.++++
T Consensus 156 ~~~~~~~~~~~~~~---~~~~~v~~H~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~rp~~ae~~av~~~~~la~~~~~~~ 232 (444)
T PRK09236 156 MLVDNPETLERIFR---DAPTLIATHCEDTPTIKANLAKYKEKYGDDIPAEMHPLIRSAEACYKSSSLAVSLAKKHGTRL 232 (444)
T ss_pred cccCcHHHHHHHHH---hcCCEEEEecCCHHHHHHHHHHHHHhcCCCCChhhccccCCHHHHHHHHHHHHHHHHHHCCCE
Confidence 2 234456666654 4589999999998776544444433 364 356678888999999999999999999999999
Q ss_pred EEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEec
Q 014320 287 YVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGT 366 (427)
Q Consensus 287 ~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgS 366 (427)
|++|+++.++++.+++++..|.++++++||||++++++++.. .+..++++||+|.+.++++||+++++|++++|||
T Consensus 233 hi~h~st~~~~~~i~~~~~~g~~vt~e~~~H~l~l~~~~~~~----~~~~~~~~Pplr~~~~~~~l~~~l~~G~i~~igt 308 (444)
T PRK09236 233 HVLHISTAKELSLFENGPLAEKRITAEVCVHHLWFDDSDYAR----LGNLIKCNPAIKTASDREALRQALADDRIDVIAT 308 (444)
T ss_pred EEEeCCCHHHHHHHHHHHHCCCCEEEEEchhhhhcCHHHHhc----cCceEEECCCCCCHHHHHHHHHHHhCCCCcEEEC
Confidence 999999999999999999999999999999999999988743 2468999999999999999999999999999999
Q ss_pred CCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 367 DHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 367 D~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
||+|+..++|. .+|+.+++|++++|+.++++| ..+.++.++++++++++|.|||++
T Consensus 309 Dh~p~~~~~k~---~~~~~~~~G~~~~e~~l~~l~-~~v~~~~~~~~~~~~~~t~~pA~~ 364 (444)
T PRK09236 309 DHAPHTWEEKQ---GPYFQAPSGLPLVQHALPALL-ELVHEGKLSLEKVVEKTSHAPAIL 364 (444)
T ss_pred CCCCCCHHHhc---CCcccCCCCcccHHHHHHHHH-HHHHhcCCCHHHHHHHHHHhHHHh
Confidence 99999887774 389999999999999999999 567788899999999999999985
|
|
| >PRK04250 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-46 Score=365.00 Aligned_cols=318 Identities=23% Similarity=0.296 Sum_probs=249.5
Q ss_pred CcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHHHHHHHHcCC
Q 014320 59 GGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGG 138 (427)
Q Consensus 59 ~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~G 138 (427)
+++|++.....+++|+|+||||++|++. . .++.++||++|++|+|||||+|+|+..+ +..+++++.+++++++++|
T Consensus 3 ~~~v~~~~~~~~~~i~i~~G~I~~i~~~-~-~~~~~~iD~~g~~v~PG~ID~HvH~~~~--~~~~~e~~~~~~~aa~~gG 78 (398)
T PRK04250 3 EGKFLLKGRIVEGGIGIENGRISKISLR-D-LKGKEVIKVKGGIILPGLIDVHVHLRDF--EESYKETIESGTKAALHGG 78 (398)
T ss_pred eEEEEECCcEEEEEEEEECCEEEEeeCC-C-CCCCeEEECCCCEEccCEEeccccccCC--CCCcHHHHHHHHHHHHhCC
Confidence 5677877766689999999999999741 1 1346899999999999999999999765 5667899999999999999
Q ss_pred ceEEecCcCCCCC-cHHHHHHHHHHHhc-cccceeceeccccCCChhhHHHHHHHHHHcCCCeEEEEEecCCCccCCHHH
Q 014320 139 TTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDEL 216 (427)
Q Consensus 139 vTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~~~~~ 216 (427)
|||++|+.+..+. ...+.++...+... +++++++++. .... ...++.++. . ..+|+|+.+... ....+.
T Consensus 79 vTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~---~~~~l~~l~-~---~~~k~f~~~~~~-~~~~~~ 149 (398)
T PRK04250 79 ITLVFDMPNTKPPIMDEKTYEKRMRIAEKKSYADYALNF-LIAG---NCEKAEEIK-A---DFYKIFMGASTG-GIFSEN 149 (398)
T ss_pred eEEEEECCCCCCCCCcHHHHHHHHHHhCcCceeeEEEEE-ecCC---CHHHHHHHH-h---hheEEEEecCCC-chhHHH
Confidence 9999999754332 45566666555554 5788998876 3322 233344443 1 257888754221 112222
Q ss_pred HHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHH
Q 014320 217 LIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDA 296 (427)
Q Consensus 217 l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~ 296 (427)
+... ..+.+..+.+|+|+.+.+. ....+|..+|..++.+++.+++.+++++|++|+++.++
T Consensus 150 ~~~~---~~~~~~~v~~H~E~~~~~~----------------~~~~~p~~aE~~av~r~~~la~~~~~~lhi~HvSt~~~ 210 (398)
T PRK04250 150 FEVD---YACAPGIVSVHAEDPELIR----------------EFPERPPEAEVVAIERALEAGKKLKKPLHICHISTKDG 210 (398)
T ss_pred HHHH---HHhcCCeEEEEecChhhhh----------------cccCCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHH
Confidence 2221 2233567999999976542 12358999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCC-EEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhh
Q 014320 297 MEEIAKARKAGQR-VIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQ 375 (427)
Q Consensus 297 ~~~i~~~~~~G~~-v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~ 375 (427)
++.+++ +|++ |++|+|||||+|+++.+. .+..+|++||||++.|+++||+++. .+++|+|||+||+.++
T Consensus 211 ~~~i~~---~g~~~vt~Ev~ph~L~l~~~~~~-----~~~~~k~~PPLR~~~d~~aL~~~l~--~Id~i~sDHaP~~~~~ 280 (398)
T PRK04250 211 LKLILK---SNLPWVSFEVTPHHLFLTRKDYE-----RNPLLKVYPPLRSEEDRKALWENFS--KIPIIASDHAPHTLED 280 (398)
T ss_pred HHHHHH---cCCCcEEEEeCHHHhccCHHHHC-----CCCceEEcCCCCCHHHHHHHHHhhc--cCCEEEcCCcccCHHH
Confidence 888854 5887 999999999999998762 1378999999999999999999996 4999999999999887
Q ss_pred hhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 376 KAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 376 ~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
|. .+++|++|+|+.+|++|+ ++.+++++++++++++|.|||++
T Consensus 281 k~-------~~~~G~~g~e~~lpl~~~-~v~~~~lsl~~~v~~~t~npAk~ 323 (398)
T PRK04250 281 KE-------AGAAGIPGLETEVPLLLD-AANKGMISLFDIVEKMHDNPARI 323 (398)
T ss_pred hh-------cCCCCcchHHHHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHH
Confidence 73 247999999999999994 78889999999999999999985
|
|
| >PRK00369 pyrC dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=355.10 Aligned_cols=299 Identities=21% Similarity=0.238 Sum_probs=238.7
Q ss_pred eeeEEEeCCeEEEeeCCCCCCCCceEEeC-CCCEEeccccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCC
Q 014320 70 IADVYVEDGIVVAVQPNINVGDDVKVLDA-TGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIP 148 (427)
Q Consensus 70 ~~~i~i~~g~I~~vg~~~~~~~~~~viD~-~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~ 148 (427)
+..|.|++|+|..|++.. +.+.++||+ +|++|+|||||+|+|+..+ |..++|++.+++++|+++||||++||.+.
T Consensus 13 ~~~~~~~~~~~~~i~~~~--~~~~~~id~~~G~~vlPG~ID~HvH~r~p--g~~~~ed~~sgs~AAa~GGvTtv~~mPnt 88 (392)
T PRK00369 13 KEIKEICINFDRRIKEIK--SRCKPDLDLPQGTLILPGAIDLHVHLRGL--KLSYKEDVASGTSEAAYGGVTLVADMPNT 88 (392)
T ss_pred CceEEEeeeeeeeEeecc--CCCCceeecCCCCEEeCCEEEcccccCCC--CCcccccHHHHHHHHHhCCcEEEEECCCC
Confidence 467889999999998752 346789999 6999999999999999998 88889999999999999999999999764
Q ss_pred CCC-cHHHHHHHHHHHhc-cccceeceeccccCCChhhHHHHHHHHHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHH
Q 014320 149 ING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKS 226 (427)
Q Consensus 149 ~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~ 226 (427)
.+. ...+.++...+... .+.++++++...... .+++. ..|+.++|.|.+. ..+.+. ++.+.+
T Consensus 89 ~P~~~~~~~l~~~~~~a~~~~~vd~~~~~~~~~~----~~el~----~~~~~g~k~f~~~----~~~~~~----~~~~~~ 152 (392)
T PRK00369 89 IPPLNTPEAITEKLAELEYYSRVDYFVYSGVTKD----PEKVD----KLPIAGYKIFPED----LEREET----FRVLLK 152 (392)
T ss_pred CCCCChHHHHHHHHHHhCcCCeEEEEEEeeccCC----HHHHH----HhhCceEEEECCC----CchHHH----HHHHHH
Confidence 333 56666766666554 478899888654321 12232 3467789988521 122333 344445
Q ss_pred cCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhc
Q 014320 227 LGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKA 306 (427)
Q Consensus 227 ~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~ 306 (427)
++.++.+|+|+.+.+... +...+|..+|..++.+...+ +++|++|+++.+++ +.+|++
T Consensus 153 ~~~~v~~HaE~~~l~~~~--------------~~~~rp~~aE~~ai~~~~~~-----~~lhi~HvSt~~~v---~~ak~~ 210 (392)
T PRK00369 153 SRKLKILHPEVPLALKSN--------------RKLRRNCWYEIAALYYVKDY-----QNVHITHASNPRTV---RLAKEL 210 (392)
T ss_pred hCCEEEEeCCCHHHhhcc--------------hhcccCHHHHHHHHHHHHHh-----CCEEEEECCCHHHH---HHHHHC
Confidence 568999999997654311 22358888888887776666 89999999998864 566777
Q ss_pred CCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccC
Q 014320 307 GQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKI 386 (427)
Q Consensus 307 G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~ 386 (427)
| |++|+|||||+|+++. +..+|++||||++.|+++||+++++ +++|+|||+||+.++|. .+|+++
T Consensus 211 g--vt~Ev~pHhL~l~~~~--------~~~~k~~PPLR~~~dr~aL~~~l~~--id~i~SDHaP~~~~~K~---~~f~~~ 275 (392)
T PRK00369 211 G--FTVDITPHHLLVNGEK--------DCLTKVNPPIRDINERLWLLQALSE--VDAIASDHAPHSSFEKL---QPYEVC 275 (392)
T ss_pred C--CeEEechhHheeccCC--------CCceEEeCCCCCHHHHHHHHHHHHh--CCEEEeCCCCCCHHHcc---CCHhhC
Confidence 7 7889999999998752 2578999999999999999999998 99999999999988874 389999
Q ss_pred CCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 387 PNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 387 ~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
++|++|+|+.+|++|+ ++.++.++++++++++|.|||++
T Consensus 276 ~~Gi~GlE~~lpll~~-~v~~~~lsl~~~v~~~s~nPA~i 314 (392)
T PRK00369 276 PPGIAALSFTPPFIYT-LVSKGILSIDRAVELISTNPARI 314 (392)
T ss_pred CCCCeeHHHHHHHHHH-HHHcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999995 77888999999999999999985
|
|
| >cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-45 Score=352.23 Aligned_cols=300 Identities=29% Similarity=0.410 Sum_probs=249.9
Q ss_pred CCEEeccccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCC-cHHHHHHHHHHHh-ccccceeceeccc
Q 014320 100 GKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAI 177 (427)
Q Consensus 100 g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~ 177 (427)
|++|+||+||+|+|+..+ |..++|++.+++++|+++||||++||.+..+. ...+.++...+.. ..+.+++++++..
T Consensus 1 G~~vlPG~iD~HvH~r~p--g~~~~ed~~s~t~aA~~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~~~ 78 (361)
T cd01318 1 GLLILPGVIDIHVHFREP--GLTYKEDFVSGSRAAAAGGVTTVMDMPNTKPPTTTAEALYEKLRLAAAKSVVDYGLYFGV 78 (361)
T ss_pred CCEEecCeeEeeecCCCC--CCCccCcHHHHHHHHHcCCCEEEEECCCCCCCCCcHHHHHHHHHHhccCceeEEEEEEee
Confidence 789999999999999988 77889999999999999999999999754333 4556666665555 3468899888764
Q ss_pred cCCChhhHHHHHHHHHHcCCCeEEEEEecC-CCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCc
Q 014320 178 TKWDEVVSDEMEVMVKEKGINSFKFFMAYK-GSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGP 256 (427)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~g~~~ik~~~~~~-~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~ 256 (427)
... +++.++. ..|+.++|.|+.+. +....+...+.++++.+. .++.+|+|+.+.+........+.+
T Consensus 79 ~~~-----~~l~~~~-~~~~~g~k~f~~~~~~~~~~~~~~l~~~~~~~~---~~v~~H~E~~~l~~~~~~~~~~~~---- 145 (361)
T cd01318 79 TGS-----EDLEELD-KAPPAGYKIFMGDSTGDLLDDEETLERIFAEGS---VLVTFHAEDEDRLRENRKELKGES---- 145 (361)
T ss_pred cCh-----hhHHHHH-HhhCcEEEEEEecCCCCcCCCHHHHHHHHHhcC---CeEEEeCCChHHHHHHHhhhhhcc----
Confidence 332 3455555 56788999998642 122257888888888774 789999999877654433332222
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCce
Q 014320 257 EGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAK 336 (427)
Q Consensus 257 ~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~ 336 (427)
.|...||..+|..++.+.+.+++..++++|++|+++.++++.++.+| .+|++++|||||+++++.+.+ .+.+
T Consensus 146 -~~~~~~P~~aE~~av~r~~~la~~~~~~~hi~Hvs~~~~~~~i~~~k---~~vt~ev~ph~L~l~~~~~~~----~~~~ 217 (361)
T cd01318 146 -AHPRIRDAEAAAVATARALKLARRHGARLHICHVSTPEELKLIKKAK---PGVTVEVTPHHLFLDVEDYDR----LGTL 217 (361)
T ss_pred -CCCCcCCHHHHHHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHHhC---CCeEEEeCHHHhhcCHHHHhc----CCCe
Confidence 66778999999999999999999999999999999999999999887 589999999999999887642 2468
Q ss_pred eEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHH
Q 014320 337 YVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYV 416 (427)
Q Consensus 337 ~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v 416 (427)
++++||+|++.++++||+++++|.+++++|||+||+..+|. .+|+.+++|++|+|+.+|+++ .++.++++++++++
T Consensus 218 ~k~~PPlr~~~d~~aL~~~l~~G~id~i~SDh~P~~~~~k~---~~~~~a~~G~~g~e~~l~~~~-~~v~~~~l~l~~a~ 293 (361)
T cd01318 218 GKVNPPLRSREDRKALLQALADGRIDVIASDHAPHTLEEKR---KGYPAAPSGIPGVETALPLML-TLVNKGILSLSRVV 293 (361)
T ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCEEeeCCCCCCHHHcc---CChhhCCCCCccHHHHHHHHH-HHHHcCCCCHHHHH
Confidence 99999999999999999999999999999999999988875 379999999999999999998 57778889999999
Q ss_pred HHHchhhhcC
Q 014320 417 RLTSTEWGRL 426 (427)
Q Consensus 417 ~~~t~npA~~ 426 (427)
+++|.|||++
T Consensus 294 ~~~t~nPA~~ 303 (361)
T cd01318 294 RLTSHNPARI 303 (361)
T ss_pred HHHhHHHHHH
Confidence 9999999985
|
This group contains the archeal members of the DHOase family. |
| >cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=353.16 Aligned_cols=317 Identities=27% Similarity=0.344 Sum_probs=267.0
Q ss_pred ceEEeCCCCEEeccccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCC-cHHHHHHHHHHHhcc-ccce
Q 014320 93 VKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN-SCMD 170 (427)
Q Consensus 93 ~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~-~~~~ 170 (427)
.++||++|++|+||+||+|+|+..+ +...++++.+++++++.+||||++||....+. ...+.++..++...+ ..++
T Consensus 2 ~~~iD~~g~~vlPG~iD~HvH~~~~--~~~~~e~~~s~s~aA~~GGvTtii~~p~~~p~~~~~~~~~~~~~~~~~~~~~~ 79 (374)
T cd01317 2 AEVIDAEGKILAPGLVDLHVHLREP--GFEYKETLESGAKAAAAGGFTTVVCMPNTNPVIDNPAVVELLKNRAKDVGIVR 79 (374)
T ss_pred CeEEECCCCEEecCEEeeccccCCC--CccccchHHHHHHHHHhCCCcEEEECCCCCCCCCCHHHHHHHHHHhccCCcee
Confidence 4789999999999999999999887 55678999999999999999999999754333 455666666655543 5666
Q ss_pred eceeccccCCCh-hhHHHHHHHHHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHH
Q 014320 171 YGFHMAITKWDE-VVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMI 249 (427)
Q Consensus 171 ~~~~~~~~~~~~-~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~ 249 (427)
+.++++...... +.++++.++. ..|+.++|.+ +....+...+.++++.+++.|.++.+|+|+.+.+.. ...
T Consensus 80 ~~~~~~~~~~~~~~~~~~i~~l~-~~G~~~~k~~----~~~~~~~~~l~~~~~~~~~~g~~v~~H~E~~~~~~~---~~~ 151 (374)
T cd01317 80 VLPIGALTKGLKGEELTEIGELL-EAGAVGFSDD----GKPIQDAELLRRALEYAAMLDLPIIVHPEDPSLAGG---GVM 151 (374)
T ss_pred EEEEEEEeeCCCcccHHHHHHHH-HCCcEEEEcC----CcCCCCHHHHHHHHHHHHhcCCeEEEecCChhhhhc---cCc
Confidence 666655544332 2467788877 6788888843 223468889999999999999999999998876532 233
Q ss_pred HcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCC
Q 014320 250 ELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHS 329 (427)
Q Consensus 250 ~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~ 329 (427)
..|...+..+...+|..+|..++.++++++++.++++|++|+++.++++.++++++.|+.+++++||||++++++.+..
T Consensus 152 ~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~~~~i~i~h~ss~~~l~~i~~~~~~G~~~~~e~~~h~L~ld~~~~~~- 230 (374)
T cd01317 152 NEGKVASRLGLPGIPPEAETIMVARDLELAEATGARVHFQHLSTARSLELIRKAKAKGLPVTAEVTPHHLLLDDEALES- 230 (374)
T ss_pred cCChhhHHhCCCCCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHHHHCCCCEEEEecHHHHhcCHHHHhc-
Confidence 4555566677788999999999999999999999999999999999999999999999999999999999999988743
Q ss_pred CcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCC
Q 014320 330 DFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQ 409 (427)
Q Consensus 330 ~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~ 409 (427)
.+..++++||+|++.+++.||+++++|++++|||||+|++...|.. +|+.+++|++|+++.++.+++.+++.+.
T Consensus 231 ---~~~~~k~~Pplr~~~~~~~l~~~~~~G~i~~igsDh~p~~~~~k~~---~~~~~~~Gi~g~e~~l~~~~~~~~~~~~ 304 (374)
T cd01317 231 ---YDTNAKVNPPLRSEEDREALIEALKDGTIDAIASDHAPHTDEEKDL---PFAEAPPGIIGLETALPLLWTLLVKGGL 304 (374)
T ss_pred ---cCCceEEcCCCCCHHHHHHHHHHHhcCCceEEEcCCCCCCHHHccC---CHhhCCCcHhHHHHHHHHHHHHHHHcCC
Confidence 2468899999999999999999999999999999999999887753 7999999999999999999988888888
Q ss_pred CCHHHHHHHHchhhhcC
Q 014320 410 ISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 410 l~l~~~v~~~t~npA~~ 426 (427)
++++++++++|.|||++
T Consensus 305 ~~~~~~~~~~t~npA~~ 321 (374)
T cd01317 305 LTLPDLIRALSTNPAKI 321 (374)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999999985
|
This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth. |
| >cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=339.78 Aligned_cols=278 Identities=33% Similarity=0.437 Sum_probs=234.0
Q ss_pred CEEeccccccccccccCcCCCC-ChhhHHHHHHHHHcCCceEEecCcCCCCC-cHHHHHHHHHHHh-ccccceeceeccc
Q 014320 101 KFVMPGGIDPHTHLAMEFMGSE-TIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAI 177 (427)
Q Consensus 101 ~~v~PG~ID~H~H~~~~~~g~~-~~e~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~ 177 (427)
++|+||+||+|+|+..+ +.. +++++.+++++|+++||||++||.+..+. ...+.++...+.. .++.++++++...
T Consensus 1 ~~vlPG~iD~HvH~r~p--g~~~~~e~~~t~t~aA~~GG~Ttv~~mpn~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~ 78 (337)
T cd01302 1 LLVLPGFIDIHVHLRDP--GGTTYKEDFESGSRAAAAGGVTTVIDMPNTGPPPIDLPAIELKIKLAEESSYVDFSFHAGI 78 (337)
T ss_pred CEecCCeeEeeeccCCC--CCCCchhHHHHHHHHHHhCCCcEEEECCCCCCCCCcHHHHHHHHHHhCcCcEeeEEEEEec
Confidence 57999999999999988 655 88999999999999999999999754333 3455555544444 4568899888665
Q ss_pred cCCChhhHHHHHHHHHHcCCCeEEEEEecCCCc--cCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCC
Q 014320 178 TKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSF--MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITG 255 (427)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~g~~~ik~~~~~~~~~--~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~ 255 (427)
... +.++++.++. ..|+.++|+|+.+.... ..+++.+.++++.+++.|+++.+|+|
T Consensus 79 ~~~--~~~~el~~l~-~~Gv~g~K~f~~~~~~~~~~~~~~~l~~~~~~~~~~g~~v~~H~E------------------- 136 (337)
T cd01302 79 GPG--DVTDELKKLF-DAGINSLKVFMNYYFGELFDVDDGTLMRTFLEIASRGGPVMVHAE------------------- 136 (337)
T ss_pred cCc--cCHHHHHHHH-HcCCcEEEEEEeccCCCccccCHHHHHHHHHHHHhcCCeEEEeHH-------------------
Confidence 442 2466777776 68999999998754222 56889999999999999999999988
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCc
Q 014320 256 PEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAA 335 (427)
Q Consensus 256 ~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~ 335 (427)
+.+.++++.|+++|++|+++.++++.++.+|++|++|++|+||||++++++++.. .+.
T Consensus 137 ------------------r~~~la~~~g~~l~i~Hiss~~~le~i~~ak~~g~~vt~ev~ph~L~l~~~~~~~----~~~ 194 (337)
T cd01302 137 ------------------RAAQLAEEAGANVHIAHVSSGEALELIKFAKNKGVKVTCEVCPHHLFLDESMLRL----NGA 194 (337)
T ss_pred ------------------HHHHHHHHhCCcEEEEeCCCHHHHHHHHHHHHCCCcEEEEcChhhheeCHHHhhC----CCc
Confidence 2245667789999999999999999999999999999999999999999887732 236
Q ss_pred eeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHH
Q 014320 336 KYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDY 415 (427)
Q Consensus 336 ~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~ 415 (427)
.++++||+|++.++++||+++++|.+++|+|||+|++...|..+ .+|+.+++|++|+|+.++++++.++ +++++++++
T Consensus 195 ~~k~~Pplr~~~~~~~L~~~l~~G~id~i~sDh~p~~~~~k~~~-~~~~~a~~G~~g~e~~l~~~~~~~~-~~~i~~~~~ 272 (337)
T cd01302 195 WGKVNPPLRSKEDREALWEGVKNGKIDTIASDHAPHSKEEKESG-KDIWKAPPGFPGLETRLPILLTEGV-KRGLSLETL 272 (337)
T ss_pred eEEEeCCCCCHHHHHHHHHHHhCCCCCEEecCCCCCCHHHhccC-CCcccCCCCcccHHHHHHHHHHHHH-hcCCCHHHH
Confidence 89999999999999999999999999999999999998877532 4799999999999999999997665 457999999
Q ss_pred HHHHchhhhcC
Q 014320 416 VRLTSTEWGRL 426 (427)
Q Consensus 416 v~~~t~npA~~ 426 (427)
++++|.|||++
T Consensus 273 ~~~~s~~pA~~ 283 (337)
T cd01302 273 VEILSENPARI 283 (337)
T ss_pred HHHHHHHHHHH
Confidence 99999999985
|
Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines. |
| >cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=321.72 Aligned_cols=273 Identities=24% Similarity=0.309 Sum_probs=215.8
Q ss_pred CEEeccccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCC-cHHHHHHHHHHHhc-cccceeceecccc
Q 014320 101 KFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAIT 178 (427)
Q Consensus 101 ~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 178 (427)
.+|+|||||.|+|+..+ |..++|++.+++++|+++||||++||.+..+. ...+.++...+... .+.++++++.+..
T Consensus 2 ~~vlPG~ID~HvH~r~p--g~~~~ed~~sgs~AAa~GGvTtv~dmPnt~P~~~~~~~~~~~~~~a~~~s~vd~~~~~~~~ 79 (344)
T cd01316 2 TIRLPGLIDVHVHLREP--GATHKEDFASGTKAALAGGFTMVRAMPNTNPSIVDVASLKLVQSLAQAKARCDYAFSIGAT 79 (344)
T ss_pred eEEeCCeEEeeeccCCC--CcCCcChHHHHHHHHHhCCCeEEEECCCCCCCCCCHHHHHHHHHHhccCcEEeEEEEeeec
Confidence 47999999999999998 78889999999999999999999999754332 45566666665554 4789999886664
Q ss_pred CCChhhHHHHHHHHHHcCCCeEEEEEecCCCc-cCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcc
Q 014320 179 KWDEVVSDEMEVMVKEKGINSFKFFMAYKGSF-MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPE 257 (427)
Q Consensus 179 ~~~~~~~~~~~~l~~~~g~~~ik~~~~~~~~~-~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~ 257 (427)
..+. .++.++. . .+.++|+|+.+.... ..++.........+...+.++.+|+|+.
T Consensus 80 ~~~~---~~~~~l~-~-~~~g~k~f~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~e~~------------------- 135 (344)
T cd01316 80 STNA---ATVGELA-S-EAVGLKFYLNETFSTLILDKITAWASHFNAWPSTKPIVTHAKSQ------------------- 135 (344)
T ss_pred CCCH---HHHHHHH-h-ccCeEEEEECCCCCCCccchHHHHHHHHHhcccCCCeEEehhhH-------------------
Confidence 4333 2344443 2 357889887542111 1222222222333444577778887653
Q ss_pred cccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCcee
Q 014320 258 GHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKY 337 (427)
Q Consensus 258 ~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~ 337 (427)
.+.+++.+++.+|+++|++|+++.++++.++++|+.|++|++++|||||+++++.+.. ..+
T Consensus 136 -------------~~~~~l~la~~~g~~lhi~HiSt~~~~~~i~~ak~~g~~vt~ev~phhL~l~~~~~~~------~~~ 196 (344)
T cd01316 136 -------------TLAAVLLLASLHNRSIHICHVSSKEEINLIRLAKARGLKVTCEVSPHHLFLSQDDLPR------GQY 196 (344)
T ss_pred -------------HHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHHHHHCCCcEEEEechHHeeccHHHhhc------CCc
Confidence 3445778888999999999999999999999999999999999999999999887632 368
Q ss_pred EEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHH
Q 014320 338 VMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVR 417 (427)
Q Consensus 338 ~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~ 417 (427)
+++||||++.||++||+++. .+++|+|||+||+.++|.. .++++|++|+|+.+|++|+ ++.++++++.++++
T Consensus 197 k~~PPLR~~~dr~aL~~~l~--~id~i~SDHaP~~~~~K~~-----~~a~~G~~g~e~~lpl~~~-~v~~~~i~l~~l~~ 268 (344)
T cd01316 197 EVRPFLPTREDQEALWENLD--YIDCFATDHAPHTLAEKTG-----NKPPPGFPGVETSLPLLLT-AVHEGRLTIEDIVD 268 (344)
T ss_pred eeCCCCcCHHHHHHHHHHHh--cCCEEEcCCCCCCHHHhcC-----CCCCCCcccHHHHHHHHHH-HHHcCCCCHHHHHH
Confidence 89999999999999999995 5999999999999887742 2889999999999999995 78888999999999
Q ss_pred HHchhhhcC
Q 014320 418 LTSTEWGRL 426 (427)
Q Consensus 418 ~~t~npA~~ 426 (427)
++|.||||+
T Consensus 269 ~~s~nPAk~ 277 (344)
T cd01316 269 RLHTNPKRI 277 (344)
T ss_pred HHHHhHHHH
Confidence 999999985
|
Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate. |
| >cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=302.75 Aligned_cols=284 Identities=17% Similarity=0.130 Sum_probs=212.7
Q ss_pred EeccccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCC-cHHHHHHHHH-HHhccc-cceeceeccccC
Q 014320 103 VMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYE-KKAKNS-CMDYGFHMAITK 179 (427)
Q Consensus 103 v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~ 179 (427)
-+||+||+|+|+..+ +++.+++++++++| |+++||....+. ...+.+.... +...+. +.++.+++....
T Consensus 2 ~~Pg~iD~h~h~~~~-------~~~~~~~~aa~~gG-Ttvv~mpnt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 73 (335)
T cd01294 2 TIPRPDDMHLHLRDG-------AMLKLVLPYTARGF-SRAIVMPNLKPPVTTTADALAYRERILAADPGPNFTPLMTLYL 73 (335)
T ss_pred cCCCcceeEecCCCc-------hHHHHHHHHHHhCC-CEEEECCCCCCCCCCHHHHHHHHHHHHhcCCCCcEEEEEEEec
Confidence 379999999998753 78889999999999 999999754332 2333333333 333333 455554433311
Q ss_pred CChhhHHHHHHHHHHcCCCeEEEEEec----CCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCC
Q 014320 180 WDEVVSDEMEVMVKEKGINSFKFFMAY----KGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITG 255 (427)
Q Consensus 180 ~~~~~~~~~~~l~~~~g~~~ik~~~~~----~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~ 255 (427)
......++++++.+..|+.++|+|+.. .+....+.+.+.++++.+++.|+++.+|+|+.....
T Consensus 74 ~~~~~~~el~~~~~~~G~~g~Klf~~~~~~~~~~~~~d~~~l~~~~e~~~~~g~~V~vHaE~~~l~~------------- 140 (335)
T cd01294 74 TENTTPEELREAKKKGGIRGVKLYPAGATTNSQGGVTDLEKIYPVLEAMQKLGMPLLVHGEVPDFKI------------- 140 (335)
T ss_pred cCCCCHHHHHHHHHhCCceEEEEecCCCccCCCCCcCCHHHHHHHHHHHHHcCCeEEEecCCCcccc-------------
Confidence 122235677777634499999998642 111123568899999999999999999999865311
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHhc-CCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccC
Q 014320 256 PEGHALSRPPLLEGEATTRAIRLAEFV-NTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTA 334 (427)
Q Consensus 256 ~~~~~~~~p~~~e~~a~~~~~~~~~~~-g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~ 334 (427)
.+...+...+.+.+.++++. ++++|++|+++.++++.++++|+ +|++|+|||||+|+++.+.+.. .|
T Consensus 141 -------~~~~~e~~~~~~~~~lA~~~p~~~v~i~Hvst~~~~~~i~~ak~---~vt~Et~ph~L~l~~~~~~~~~--~g 208 (335)
T cd01294 141 -------DVLDREAKFIPVLEPLAQRFPKLKIVLEHITTADAVEYVKSCNE---NVAATITPHHLLLTRDDLLGGG--LN 208 (335)
T ss_pred -------cchhhHHHHHHHHHHHHHHcCCCeEEEecccHHHHHHHHHhCCC---CcEEEEchhHheeeHHHhcCCC--CC
Confidence 01112234456788888874 99999999999999999998876 8999999999999998774211 24
Q ss_pred ceeEEcCCCCCcccHHHHHHHHhcCCce-EEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHH
Q 014320 335 AKYVMSPPIRASGHNKALQAALATGILQ-LVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVT 413 (427)
Q Consensus 335 ~~~~~~pplr~~~~~~~l~~~l~~G~~~-~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~ 413 (427)
.++|++||||++.|+++||+++++|.++ +|+|||+||+.++|.. +++ .+|+.++++.+|+++ ..++ ++++++
T Consensus 209 ~~~k~~PPlR~~~d~~~L~~~l~~G~id~~i~SDHaP~~~~~K~~---~~g--~~Gi~~~~~~l~~~~-~~~~-~~l~l~ 281 (335)
T cd01294 209 PHLYCKPVAKRPEDREALRKAATSGHPKFFLGSDSAPHPKSNKES---SCG--CAGIFSAPIALPYLA-EVFE-EHNALD 281 (335)
T ss_pred CCeEEcCCCCCHHHHHHHHHHHHcCCCCeEEECCCCCCCCccccC---CCC--CccccCHHHHHHHHH-HHHh-ccCCHH
Confidence 7899999999999999999999999999 5999999999888742 333 348888888999998 5555 589999
Q ss_pred HHHHHHchhhhcC
Q 014320 414 DYVRLTSTEWGRL 426 (427)
Q Consensus 414 ~~v~~~t~npA~~ 426 (427)
++++++|.||||+
T Consensus 282 ~~v~~~s~nPA~i 294 (335)
T cd01294 282 KLEAFASDNGPNF 294 (335)
T ss_pred HHHHHHHhHHHHH
Confidence 9999999999996
|
In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric. |
| >PRK09061 D-glutamate deacylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=310.88 Aligned_cols=330 Identities=16% Similarity=0.166 Sum_probs=249.3
Q ss_pred CccEEEECcEEEcCCCc--eeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHH
Q 014320 52 SSKILIKGGTVVNAHHQ--QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS 129 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~~--~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~ 129 (427)
+.+++|+|++|+++.+. ..++|+|+||+|++|++.. +.+.++||++|++|+|||||+|+|...+ +
T Consensus 18 ~~~~li~~~~vid~~~~~~~~~~v~I~~G~I~~ig~~~--~~~~~viD~~g~~v~PG~ID~H~H~~~~--~--------- 84 (509)
T PRK09061 18 PYDLVIRNGRVVDPETGLDAVRDVGIKGGKIAAVGTAA--IEGDRTIDATGLVVAPGFIDLHAHGQSV--A--------- 84 (509)
T ss_pred cCCEEEECcEEEeCCCCeeccceEEEECCEEEEecCCC--CCCCeEEeCCCCEEecCeEeeeeCCCCC--c---------
Confidence 45689999999997663 3479999999999998753 2356899999999999999999997654 2
Q ss_pred HHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceecccc-------C-------------------C---
Q 014320 130 GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAIT-------K-------------------W--- 180 (427)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-------------------~--- 180 (427)
..+.++.+||||++++.. ......+.++...+. ...++++++.+.. . +
T Consensus 85 ~~~~~~~~GvTtvv~~~~-~~~p~~~~~~~~~~~--~~~vn~~~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (509)
T PRK09061 85 AYRMQAFDGVTTALELEA-GVLPVARWYAEQAGE--GRPLNYGASVGWTPARIAVLTGPQAEGTIADFGKALGDPRWQER 161 (509)
T ss_pred cchhhccCCceeEEeecc-CCCCHHHHHHHHHhc--CCcceeehhcCcHHHHHHHhCCcccccccccccccccccccccC
Confidence 145678999999999731 111232223222221 2235655433221 1 1
Q ss_pred --ChhhHHHHHHHHH---HcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCC
Q 014320 181 --DEVVSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITG 255 (427)
Q Consensus 181 --~~~~~~~~~~l~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~ 255 (427)
+.+.++++.++.+ +.|+.+++.+..+. +..+.+++.++++.|+++|.++.+|+++....
T Consensus 162 ~~t~~el~~m~~ll~~al~~Ga~gis~~~~y~--p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~~-------------- 225 (509)
T PRK09061 162 AATPAELAEILELLEQGLDEGALGIGIGAGYA--PGTGHKEYLELARLAARAGVPTYTHVRYLSNV-------------- 225 (509)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEecCCccC--CCCCHHHHHHHHHHHHHcCCEEEEEecCcccC--------------
Confidence 1344566666664 47999998765543 34589999999999999999999999875421
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCC------HHHHHHHHHHhhcCCCEEEecCccc--------eee
Q 014320 256 PEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS------MDAMEEIAKARKAGQRVIGEPVVSG--------LVL 321 (427)
Q Consensus 256 ~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~------~~~~~~i~~~~~~G~~v~~~~~p~~--------l~~ 321 (427)
....|..++.+.++++++.|++++++|+++ ...++.+++++++|++|++++|||+ +++
T Consensus 226 --------~~~~e~~av~~~i~lA~~~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~P~~~~~t~~~~~~l 297 (509)
T PRK09061 226 --------DPRSSVDAYQELIAAAAETGAHMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAYPYGAGSTVVGAAFF 297 (509)
T ss_pred --------CchhHHHHHHHHHHHHHHhCCCEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEecCcchhhhhhccccc
Confidence 122356788999999999999999999998 7889999999999999999999999 777
Q ss_pred CcccccCCCcccCceeEE---cCCCCC-------------------------cccHHHHHHHHhcCCceEEecCCCCCCh
Q 014320 322 DDSWLWHSDFVTAAKYVM---SPPIRA-------------------------SGHNKALQAALATGILQLVGTDHCAFNS 373 (427)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~---~pplr~-------------------------~~~~~~l~~~l~~G~~~~lgSD~~p~~~ 373 (427)
+++...+.+.. ....++ +||||+ +.+++.+++.+..+.+ +++|||.|+.+
T Consensus 298 ~~~~~~~~~~~-~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~p~~-~i~sD~~p~~~ 375 (509)
T PRK09061 298 DPGWLERMGLG-YGSLQWVETGERLLTREELAKLRANDPGGLVLIHFLDEDNPRDRALLDRSVLFPGA-AIASDAMPWTW 375 (509)
T ss_pred CHHHHHHhCCC-HHHheehhcccccCCHHHHHHHhccCCCCeEEEEeccCCCCccchhHHHHhCCCCc-eEecCCccccc
Confidence 55443221100 011256 899998 6678999999999988 99999999998
Q ss_pred hhhhcCCCCCccCCCCCchhh------HhHHHHHHHHHhc-CCCCHHHHHHHHchhhhcC
Q 014320 374 TQKAFGIDDFRKIPNGVNGIE------ERMHLVWDTMVES-GQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 374 ~~~~~~~~~~~~~~~G~~~~e------~~l~~~~~~~~~~-~~l~l~~~v~~~t~npA~~ 426 (427)
..|. .+|..++.|+.+.+ ..++.++..++.. +.+|++++++++|.|||++
T Consensus 376 ~~~~---~~~~~~~~~~~~~~~h~r~~~~~~~~l~~~v~~~~~isl~~ai~~~T~~pA~~ 432 (509)
T PRK09061 376 SDGT---VYEGDAWPLPEDAVSHPRSAGTFARFLREYVRERKALSLLEAIRKCTLMPAQI 432 (509)
T ss_pred cccc---cccccccccccCCCCCchhhcchHHHHHHHHhhcccCCHHHHHHHHHHHHHHH
Confidence 8885 48889999998887 8888888767665 4699999999999999984
|
|
| >cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=285.40 Aligned_cols=296 Identities=23% Similarity=0.250 Sum_probs=217.2
Q ss_pred cEEEECcEEEcCCC--ceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHHHH
Q 014320 54 KILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131 (427)
Q Consensus 54 ~~~i~~~~i~~~~~--~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~ 131 (427)
|++|+|++|+++.+ ...++|.|+||||++|++... +.+.++||++|++|+|||||+|+|+..+ ... + ...
T Consensus 1 d~~i~n~~v~~~~~~~~~~~~i~I~~g~I~~i~~~~~-~~~~~~iD~~G~~v~PG~iD~H~H~~~~--~~~--~---~~~ 72 (415)
T cd01297 1 DLVIRNGTVVDGTGAPPFTADVGIRDGRIAAIGPILS-TSAREVIDAAGLVVAPGFIDVHTHYDGQ--VFW--D---PDL 72 (415)
T ss_pred CEEEECCEEECCCCCccccceEEEECCEEEEEecCCC-CCCCeEEECCCCEEccCEeeeeecCCcc--ccc--C---cch
Confidence 47899999999865 457899999999999987543 2346899999999999999999999875 211 1 236
Q ss_pred HHHHcCCceEEecCcCC---CCCcH------H-----------------HHHHHHHHHh-cc-ccceec---eecccc--
Q 014320 132 AAALAGGTTMHIDFVIP---INGSL------T-----------------AGFEAYEKKA-KN-SCMDYG---FHMAIT-- 178 (427)
Q Consensus 132 ~~~l~~GvTtv~d~~~~---~~~~~------~-----------------~~~~~~~~~~-~~-~~~~~~---~~~~~~-- 178 (427)
+.++.+||||++++... ..... . +.++.+.+.. .+ ..+++. +++...
T Consensus 73 ~~a~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~l~~~ 152 (415)
T cd01297 73 RPSSRQGVTTVVLGNCGVSPAPANPDDLARLIMLMEGLVALGEGLPWGWATFAEYLDALEARPPAVNVAALVGHAALRRA 152 (415)
T ss_pred hhHHhCcEEEEEeccccCccCCCChhhhhhhhhhhhcccccccccCCCCCCHHHHHHHHHhcCCCcCeeeccCcHHHHHH
Confidence 77899999999997431 11100 0 3334444444 22 367776 444333
Q ss_pred -------CCChhhHHHHHHHHH---HcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHH
Q 014320 179 -------KWDEVVSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRM 248 (427)
Q Consensus 179 -------~~~~~~~~~~~~l~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l 248 (427)
..+++.++++.++++ +.|+.++|.++.+......+++++.++++.++++|.++.+|+++.+.
T Consensus 153 ~~g~~~~~~~~~~~~~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~-------- 224 (415)
T cd01297 153 VMGLDAREATEEELAKMRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYEGD-------- 224 (415)
T ss_pred HhCcCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECcccc--------
Confidence 124455677777753 47999999887654223578999999999999999999999987642
Q ss_pred HHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHH---------HHHHHHHhhcCCCEEEecCccce
Q 014320 249 IELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDA---------MEEIAKARKAGQRVIGEPVVSGL 319 (427)
Q Consensus 249 ~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~---------~~~i~~~~~~G~~v~~~~~p~~l 319 (427)
.|..++.+.+++++..++|++++|+++... ++.+++++++|++|++++|||++
T Consensus 225 ------------------~e~~av~~~~~~a~~~g~r~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~G~~v~~e~~p~~~ 286 (415)
T cd01297 225 ------------------SILEALDELLRLGRETGRPVHISHLKSAGAPNWGKIDRLLALIEAARAEGLQVTADVYPYGA 286 (415)
T ss_pred ------------------cHHHHHHHHHHHHHHhCCCEEEEEEecCCCcccchHHHHHHHHHHHHHhCCcEEEEeCCCCC
Confidence 145788999999999999999999998877 89999999999999999999766
Q ss_pred eeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHH
Q 014320 320 VLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHL 399 (427)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~ 399 (427)
++ ...++++++. .+++++|||+|+. + +.+. ..+ .++.
T Consensus 287 ~~---------------------------~~~~~~l~~~-~~~~i~SDh~~~~---~-----~~~~----~~~---~~~~ 323 (415)
T cd01297 287 GS---------------------------EDDVRRIMAH-PVVMGGSDGGALG---K-----PHPR----SYG---DFTR 323 (415)
T ss_pred Cc---------------------------HHHHHHHHcC-CCceeeeCCCcCC---C-----CCcc----hhC---CHHH
Confidence 43 1123344444 8999999999964 1 1111 111 1666
Q ss_pred HHHHHHhcC-CCCHHHHHHHHchhhhcC
Q 014320 400 VWDTMVESG-QISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 400 ~~~~~~~~~-~l~l~~~v~~~t~npA~~ 426 (427)
++..++..+ .++++++++++|.|||++
T Consensus 324 ~l~~~~~~~~~~~~~~~~~~~t~~pA~~ 351 (415)
T cd01297 324 VLGHYVRERKLLSLEEAVRKMTGLPARV 351 (415)
T ss_pred HHHHHhcccCCCCHHHHHHHHHHHHHHH
Confidence 775555444 599999999999999985
|
|
| >TIGR00856 pyrC_dimer dihydroorotase, homodimeric type | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=273.03 Aligned_cols=284 Identities=14% Similarity=0.117 Sum_probs=211.6
Q ss_pred EEeccccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCC-cHHHHHHHHHHHhc-cc--cceeceeccc
Q 014320 102 FVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NS--CMDYGFHMAI 177 (427)
Q Consensus 102 ~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~--~~~~~~~~~~ 177 (427)
+.+|---|+|+|+.+. .+.....-+...|||++++|....+. ...+.++.+.+... .. .+++.+++.+
T Consensus 2 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~vt~vv~mPnt~P~~~~~e~~~~~~~~~~~~s~~~vDf~~~~~v 73 (341)
T TIGR00856 2 LTIRRPDDWHLHLRDG--------AMLKAVLPYTSEIFSRAIVMPNLAPPVTTVEAAVAYRERILDAVPAGHDFTPLMTL 73 (341)
T ss_pred ceecCccceeeeccCc--------hHHHHHHHHHHhhcCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcceEEEEEE
Confidence 4577788999999885 33334445677789999999754433 23455555555443 33 3578777766
Q ss_pred cCCChhhHHHHHHHHHHcCCCeEEEEEecCC----CccCCHHHHHHHHHHHHHcCCcEEEecCChh-hHHHHHHHHHHcC
Q 014320 178 TKWDEVVSDEMEVMVKEKGINSFKFFMAYKG----SFMINDELLIEGFKRCKSLGALAMVHAENGD-AVFEGQKRMIELG 252 (427)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~g~~~ik~~~~~~~----~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~-~~~~~~~~l~~~G 252 (427)
....+...++++++.+..|+.++|+|+...+ ....+++.+.++++.+++.|+++.+|+|+.. .+...
T Consensus 74 ~~~~~~~~~Ei~~l~~~~Gv~g~Klf~~~~~~~~~~~v~dd~~l~~~~e~~~e~g~~v~vHaEd~~~~i~~~-------- 145 (341)
T TIGR00856 74 YLTDSLTPEELERAKNEGVVRAVKLYPAGATTNSSHGVTDIDAIMPVLEAMEKIGLPLLLHGEVTHGDIDIF-------- 145 (341)
T ss_pred ECCCCCCHHHHHHHHHcCCeEEEEEccCCcccCCCcCCCCHHHHHHHHHHHHHcCCeEEEeecCCCCCcccc--------
Confidence 4433335677888774449999999975321 1123558999999999999999999998863 11000
Q ss_pred CCCcccccccCCHHHHHHHHHHHH-HHHH-hcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCC
Q 014320 253 ITGPEGHALSRPPLLEGEATTRAI-RLAE-FVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSD 330 (427)
Q Consensus 253 ~~~~~~~~~~~p~~~e~~a~~~~~-~~~~-~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~ 330 (427)
..|..++.+.+ .++. ..+++++++|+++.++++.+++++. .|++|+|||||+++++.+...+
T Consensus 146 -------------~~e~~a~~~~i~~lA~~~~~~~~~i~H~st~~~~~~i~~a~~---~vt~E~~ph~L~l~~~~~~~~~ 209 (341)
T TIGR00856 146 -------------DREARFIESVLEPLRQRFPALKVVLEHITTKDAIDYVEDGNN---RLAATITPQHLMFTRNDLLGGG 209 (341)
T ss_pred -------------cchhhhhHHHHHHHHHHccCCeEEEEecCcHHHHHHHHHcCC---CEEEEEcHHHHhccHHHHhccC
Confidence 01233344333 4444 4589999999999999999988864 3999999999999998874311
Q ss_pred cccCceeEEcCCCCCcccHHHHHHHHhcCCce-EEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCC
Q 014320 331 FVTAAKYVMSPPIRASGHNKALQAALATGILQ-LVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQ 409 (427)
Q Consensus 331 ~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~-~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~ 409 (427)
+ +..++++||||++.|+++||+++++|.++ +|+|||+||+.++|.. +.+++|++|+|+.+|+++. .. ++.
T Consensus 210 ~--~~~~k~~PPlR~~~d~~aL~~~l~~G~id~~i~SDHaP~~~~~K~~-----~~~~~G~~g~e~~l~~~~~-~~-~~~ 280 (341)
T TIGR00856 210 V--NPHLYCLPILKRNIHQQALLELAASGFPKFFLGTDSAPHARHRKES-----SCGCAGCFSAPTALPSYAE-VF-EEM 280 (341)
T ss_pred C--CCceEEeCCCCCHHHHHHHHHHHHcCCCCEEEeCCCCCCChhHcCC-----CCCCCCcccHHHHHHHHHH-HH-hcC
Confidence 2 46899999999999999999999999999 6999999999887742 3589999999999999884 34 447
Q ss_pred CCHHHHHHHHchhhhcC
Q 014320 410 ISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 410 l~l~~~v~~~t~npA~~ 426 (427)
++++++++++|.||||+
T Consensus 281 ~~l~~~v~~~s~nPAk~ 297 (341)
T TIGR00856 281 NALENLEAFCSDNGPQF 297 (341)
T ss_pred CCHHHHHHHHhHhHHHH
Confidence 99999999999999986
|
This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes. |
| >PLN02599 dihydroorotase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=268.03 Aligned_cols=286 Identities=16% Similarity=0.132 Sum_probs=210.3
Q ss_pred CEEeccccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCC-cHHHHHHHHHHHhc-c--ccceeceecc
Q 014320 101 KFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-N--SCMDYGFHMA 176 (427)
Q Consensus 101 ~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~--~~~~~~~~~~ 176 (427)
.+.+|---|+|+|+.+. .+.....-..++|+|++++|.+..+. ...+.++.+++... . ..+++.+++.
T Consensus 22 ~~~~~~~~d~h~hlr~~--------~~~~~~~~~~~gg~t~~i~MPn~~Ppv~~~~~~~~~~~~~~~~~~~~vdf~~~~~ 93 (364)
T PLN02599 22 ELTITRPDDWHLHLRDG--------AKLAAVVPHSARHFGRAIVMPNLKPPVTTTARALAYRERIMKALPPGSSFEPLMT 93 (364)
T ss_pred eEEecCCcceeeEccCc--------HHHHhhhHHhcCCcCEEEECCCCCCCcCCHHHHHHHHHHHhhhcCCCcceEEEEE
Confidence 36799999999999885 23333455688999999999754333 45566666665553 3 3478887765
Q ss_pred ccCCChhhHHHHHHHHHHcCCC-eEEEEEecCC----CccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHc
Q 014320 177 ITKWDEVVSDEMEVMVKEKGIN-SFKFFMAYKG----SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIEL 251 (427)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~g~~-~ik~~~~~~~----~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~ 251 (427)
.........++++++. +.|+. ++|+|+...+ ....+.+.+..+++.+++.|+++.+|+|+.+.....
T Consensus 94 l~lt~~~~l~Ei~~~~-~~Gvv~gfKlyp~~~tt~s~~gv~d~~~l~~~le~~~e~G~~L~vH~E~~~~~~~~------- 165 (364)
T PLN02599 94 LYLTDNTTPEEIKAAK-ASGVVFAVKLYPAGATTNSQAGVTDLGKCLPVLEEMAEQGMPLLVHGEVTDPSVDI------- 165 (364)
T ss_pred EecCCCCCHHHHHHHH-HCCCcEEEEECcccCcCCCccccCCHHHHHHHHHHHHhcCCEEEEecCCCcccccc-------
Confidence 5222223467787775 78998 9999975321 112236899999999999999999999985431100
Q ss_pred CCCCcccccccCCHHHHHHHHHHHH--HHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCC
Q 014320 252 GITGPEGHALSRPPLLEGEATTRAI--RLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHS 329 (427)
Q Consensus 252 G~~~~~~~~~~~p~~~e~~a~~~~~--~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~ 329 (427)
...|...+.+.+ .+++..++++|++|+++.++++.++++++ + +|++++|||||+++++++...
T Consensus 166 -------------~~~E~~~i~r~l~~~la~~~g~kI~i~HiSt~~~ve~v~~ak~-~-~vtae~tpHhL~l~~~~~~~~ 230 (364)
T PLN02599 166 -------------FDREKVFIDTILAPLVQKLPQLKIVMEHITTMDAVEFVESCGD-G-NVAATVTPQHLLLNRNALFQG 230 (364)
T ss_pred -------------cccHHHHHHHHHHHHHHhccCCeEEEEecChHHHHHHHHhccC-C-CEEEEecHHHHhcCHHHHhcc
Confidence 001233456677 57778899999999999999999999884 4 899999999999998876422
Q ss_pred CcccCceeEEcCCCCCcccHHHHHHHHhcCCc-eEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcC
Q 014320 330 DFVTAAKYVMSPPIRASGHNKALQAALATGIL-QLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESG 408 (427)
Q Consensus 330 ~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~-~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~ 408 (427)
++ +..++++||+|++.||++||+++.+|.+ ++|||||+||+.+.|.. ....+|+...++.+|+++ ..+.+.
T Consensus 231 ~~--~~~~k~~PPlR~~~dr~aL~~al~~G~i~~~i~SDHaPh~~~~K~~-----~~g~~Gi~~~~~~l~~l~-~~~~~~ 302 (364)
T PLN02599 231 GL--QPHNYCLPVLKREIHREALVKAATSGSKKFFLGTDSAPHPKRAKEA-----SCGCAGIYSAPVALSLYA-KAFEEA 302 (364)
T ss_pred CC--CCCeEEECCCCCHHHHHHHHHHHHcCCCCEEEecCCCCCChHHhcC-----CCCCCCcccHHHHHHHHH-HHHHhc
Confidence 22 2569999999999999999999999996 89999999999877631 111234444444788765 344444
Q ss_pred CCCHHHHHHHHchhhhcC
Q 014320 409 QISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 409 ~l~l~~~v~~~t~npA~~ 426 (427)
+ +++++++++|.||||+
T Consensus 303 g-~l~~l~~~~S~npA~~ 319 (364)
T PLN02599 303 G-ALDKLEAFTSFNGPDF 319 (364)
T ss_pred C-CHHHHHHHHhHHHHHH
Confidence 4 9999999999999986
|
|
| >PRK05451 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=262.82 Aligned_cols=281 Identities=17% Similarity=0.158 Sum_probs=199.3
Q ss_pred EEeccccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCC-cHHHHHHHHHHHhc-c--ccceeceeccc
Q 014320 102 FVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-N--SCMDYGFHMAI 177 (427)
Q Consensus 102 ~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~--~~~~~~~~~~~ 177 (427)
+-+|=-||+|+|+.+. ....++.++++ .++|+++||....+. ...+.++....... + ..+++.+++..
T Consensus 5 ~~~~~~~d~h~hl~~~----~~~~~~~~~~~----~~~t~~v~mPnt~P~~~~~~~l~~~~~~a~~~~~~~~d~~~~~~i 76 (345)
T PRK05451 5 LTIRRPDDWHLHLRDG----AMLKAVVPYTA----RQFGRAIVMPNLVPPVTTVAQALAYRERILAALPAGSNFEPLMTL 76 (345)
T ss_pred EEecCcceEEEecCCc----hHHHHHHHHHH----HhcCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCCcEEEEEEE
Confidence 5678899999999863 23335555444 469999998654222 33445544444332 2 23455554444
Q ss_pred cCCChhhHHHHHHHHHHcCC-CeEEEEEecCC----CccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcC
Q 014320 178 TKWDEVVSDEMEVMVKEKGI-NSFKFFMAYKG----SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELG 252 (427)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~g~-~~ik~~~~~~~----~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G 252 (427)
........++++++. +.|+ .++|+|+...+ ....+++.+.++++.++++|+++.+|+|+.+.....
T Consensus 77 ~~~~~~~~~El~~~~-~~Gvv~g~Kl~~~~~~~~~~~~~~dd~~l~~~~e~~~~~g~~V~vHaE~~~~~~~~-------- 147 (345)
T PRK05451 77 YLTDNTDPDELERAK-ASGVVTAAKLYPAGATTNSDAGVTDIEKIYPVLEAMQKLGMPLLVHGEVTDPDIDI-------- 147 (345)
T ss_pred EeCCCCCHHHHHHHH-HCCCEEEEEEecccCccCCccCcCCHHHHHHHHHHHHHcCCEEEEecCCCCccccc--------
Confidence 332223457787776 6795 49999986421 112278899999999999999999999984331000
Q ss_pred CCCcccccccCCHHHHHHHHHHH-HHHHHhc-CCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCC
Q 014320 253 ITGPEGHALSRPPLLEGEATTRA-IRLAEFV-NTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSD 330 (427)
Q Consensus 253 ~~~~~~~~~~~p~~~e~~a~~~~-~~~~~~~-g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~ 330 (427)
...+..++.+. ..++... +++++++|+++.++++.++++ |.+|++|+|||||+++++.+...+
T Consensus 148 ------------~~~e~~~~~~~l~~lA~~~pg~~lhI~Hlst~~~~e~i~~a---~~~it~Et~ph~L~l~~~~~~~~~ 212 (345)
T PRK05451 148 ------------FDREAVFIDRVLEPLRRRFPKLKIVFEHITTKDAVDYVREA---NDNLAATITPHHLLINRNDMLVGG 212 (345)
T ss_pred ------------ccchHHHHHHHHHHHHHhcCCCcEEEEecCcHHHHHHHHhc---CCCEEEEecHHHHhcCHHHHhCCC
Confidence 00123344444 3477666 999999999999998888765 568999999999999988764222
Q ss_pred cccCceeEEcCCCCCcccHHHHHHHHhcCCce-EEecCCCCCChhhhhcCCCCCccCCCCCchhhH---hHHHHHHHHHh
Q 014320 331 FVTAAKYVMSPPIRASGHNKALQAALATGILQ-LVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEE---RMHLVWDTMVE 406 (427)
Q Consensus 331 ~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~-~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~---~l~~~~~~~~~ 406 (427)
.+..++++||||++.|+++||++|++|.++ +|||||+||+.++|. .++|.+|++. .++.++. +..
T Consensus 213 --~~~~~k~~PPLR~~~d~~aLw~~l~~G~Id~~i~SDHaP~~~~~K~--------~~~G~~gi~~~~~g~~~~~~-~~~ 281 (345)
T PRK05451 213 --IRPHLYCLPILKRETHRQALREAATSGNPKFFLGTDSAPHARHAKE--------SACGCAGIFSAPAALELYAE-VFE 281 (345)
T ss_pred --cCCCeEEeCCCCCHHHHHHHHHHHHcCCCCEEEeCCCCCCChHHhC--------CCCCCCchhhHHHHHHHHHH-HHH
Confidence 235799999999999999999999999999 899999999988773 2456666665 5577664 333
Q ss_pred cCCCCHHHHHHHHchhhhcC
Q 014320 407 SGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 407 ~~~l~l~~~v~~~t~npA~~ 426 (427)
++ .+++++++++|.||||+
T Consensus 282 ~~-~~l~~~v~~~s~nPAki 300 (345)
T PRK05451 282 EA-GALDKLEAFASLNGPDF 300 (345)
T ss_pred cC-CCHHHHHHHHhHHHHHH
Confidence 33 49999999999999986
|
|
| >PRK15446 phosphonate metabolism protein PhnM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=259.16 Aligned_cols=315 Identities=17% Similarity=0.187 Sum_probs=218.1
Q ss_pred ccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccc-c---CcCCC--CChhh
Q 014320 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLA-M---EFMGS--ETIDD 126 (427)
Q Consensus 53 ~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~-~---~~~g~--~~~e~ 126 (427)
.+++|+|++|++.+...+++|.|+||||++|++... ...++||++|++|||||||+|+|.. . +..+. ...++
T Consensus 2 ~~~~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~--~~~~~iDa~g~~v~PG~ID~H~h~~~~~~~p~~~~~~~~~~~ 79 (383)
T PRK15446 2 MEMILSNARLVLPDEVVDGSLLIEDGRIAAIDPGAS--ALPGAIDAEGDYLLPGLVDLHTDNLEKHLAPRPGVDWPADAA 79 (383)
T ss_pred ccEEEECcEEEcCCCceeeeEEEECCEEEEecCCCC--CCCceEeCCCCEEEeCeEEcccCCcccccCCCCCCccchHHH
Confidence 468999999999776668999999999999998543 2457899999999999999999543 2 32121 22378
Q ss_pred HHHHHHHHHcCCceEEecCcCCC--C--C----cHH-HHHHHHH--HHhccccceeceeccccCCChhhHHHHHHHHHHc
Q 014320 127 FFSGQAAALAGGTTMHIDFVIPI--N--G----SLT-AGFEAYE--KKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEK 195 (427)
Q Consensus 127 ~~~~~~~~l~~GvTtv~d~~~~~--~--~----~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (427)
+.++.++++++||||++|+.... + . ... ...+... ....++.++|++|+....++++.++++.+++ +.
T Consensus 80 ~~~~~~~a~~gG~Tt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vD~~~h~~~~~~~~~~~~~l~~~~-~~ 158 (383)
T PRK15446 80 LAAHDAQLAAAGITTVFDALSVGDEEDGGLRSRDLARKLIDAIEEARARGLLRADHRLHLRCELTNPDALELFEALL-AH 158 (383)
T ss_pred HHHHHHHHHhCCccEeeeeeEeccCCCCCcccHHHHHHHHHHHHHhhhcCchhccceeEEEEEecCcchHHHHHHHh-cC
Confidence 99999999999999999974211 1 1 122 2223333 2335688999999988776777788899888 78
Q ss_pred CCCeEEEEEecC-CCc-cCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHH
Q 014320 196 GINSFKFFMAYK-GSF-MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATT 273 (427)
Q Consensus 196 g~~~ik~~~~~~-~~~-~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~ 273 (427)
|+..+|.|++.. +.. ....+.+.... +++.| .+|+|+.+.+.... . +|...+.+.++
T Consensus 159 g~~~~k~fm~~~p~~~~~~~~~~~~~~~--~~~~g---~~~~e~~~~~~~~~---~-------------~~~~~~~e~i~ 217 (383)
T PRK15446 159 PRVDLVSLMDHTPGQRQFRDLEKYREYY--AGKYG---LSDEEFDAFVEERI---A-------------LSARYAPPNRR 217 (383)
T ss_pred CCcCEEEEeCCCCccccccCHHHHHHHH--HhhcC---CCHHHHHHHHHHHH---H-------------hHhhcCHHHHH
Confidence 999999999875 322 22344444444 44677 67988876654221 1 25555678899
Q ss_pred HHHHHHHhcCCCEEEEcCC-CHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeE-EcC-CCCC--ccc
Q 014320 274 RAIRLAEFVNTPLYVVHVM-SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYV-MSP-PIRA--SGH 348 (427)
Q Consensus 274 ~~~~~~~~~g~~~~i~H~~-~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~-~~p-plr~--~~~ 348 (427)
++++.+++.|+++ .+|.. .. +.++++++.|+.++- .|. +.+.... -.+.|.... ..| |+|. ...
T Consensus 218 ~~v~~A~~~g~~v-~sH~~~~~---~~i~~a~~~Gv~~~e--~~~----~~e~~~~-~~~~g~~v~~~~p~~~r~~~~~~ 286 (383)
T PRK15446 218 AIAALARARGIPL-ASHDDDTP---EHVAEAHALGVAIAE--FPT----TLEAARA-ARALGMSVLMGAPNVVRGGSHSG 286 (383)
T ss_pred HHHHHHHHCCCce-eecCCCCH---HHHHHHHHcCCceee--CCC----cHHHHHH-HHHCCCEEEeCCcccccCCcccc
Confidence 9999999999987 88873 43 458888889988763 121 1111100 000112222 223 4665 456
Q ss_pred HHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 349 NKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 349 ~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
+..+|+++++|+++++||||.|.+. ++.++ ......+++++++++++|.|||++
T Consensus 287 ~~~~~~~~~~Gv~~~lgSD~~p~~~-----------------------~~~~~-~~~~~~gls~~~al~~~T~npA~~ 340 (383)
T PRK15446 287 NVSALDLAAAGLLDILSSDYYPASL-----------------------LDAAF-RLADDGGLDLPQAVALVTANPARA 340 (383)
T ss_pred hHhHHHHHHCCCcEEEEcCCChhhH-----------------------HHHHH-HHHHhcCCCHHHHHHHHhHHHHHH
Confidence 8899999999999999999976431 11222 233456799999999999999985
|
|
| >TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-30 Score=251.22 Aligned_cols=312 Identities=16% Similarity=0.166 Sum_probs=216.0
Q ss_pred EEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEecccccccccccc------CcCCCC--ChhhH
Q 014320 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAM------EFMGSE--TIDDF 127 (427)
Q Consensus 56 ~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~------~~~g~~--~~e~~ 127 (427)
+|+|++|+++++....+|.|+||||++|++... ...++||++|++|+|||||+|+|... + +.. ..+.+
T Consensus 1 ~i~~~~vv~~~~~~~~~i~i~dg~I~~i~~~~~--~~~~~iD~~G~~v~PGlID~H~h~~e~~~~prp--~~~~~~~~~~ 76 (376)
T TIGR02318 1 VLSNARLVLEDEVVEGSVVIEDGAIADIGEGPV--ALAEAIDGEGDLLLPGLIDLHTDNLERHMSPRP--GVDWPIDAAI 76 (376)
T ss_pred CEeCeEEECCCceEeeeEEEECCEEEEecCCCC--CCCceEeCCCCEEeccEEEcccCccccCcCCCC--CCCcchHHHH
Confidence 489999999887656799999999999987432 23568999999999999999999877 4 331 23788
Q ss_pred HHHHHHHHcCCceEEecCcCCC----CCcHHHHHHHH----HHHhcc--ccceeceeccccCCChhhHHHHHHHHHHcCC
Q 014320 128 FSGQAAALAGGTTMHIDFVIPI----NGSLTAGFEAY----EKKAKN--SCMDYGFHMAITKWDEVVSDEMEVMVKEKGI 197 (427)
Q Consensus 128 ~~~~~~~l~~GvTtv~d~~~~~----~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~ 197 (427)
.++.++++++||||++|+.... .....+.++.+ .....+ ..+++++|++......+..++++++. ..|+
T Consensus 77 ~~~~~~~aa~GiTT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~h~~~e~~~~~~~~~l~~~~-~~g~ 155 (376)
T TIGR02318 77 VEHDKQLAAAGITTVFDALALGDTESGGRRPDNLRRMIDAISEARDRGLLRADHRLHLRCELPNEEVLPELEELI-DDPR 155 (376)
T ss_pred HHHHHHHhhCCcceEEeeEEecccCCcCccHHHHHHHHHHHHHhhhcCchhhhceeEEEEEecCccHHHHHHHHh-cCCC
Confidence 8999999999999999995221 11223333332 333334 78899999887655666688888887 7899
Q ss_pred CeEEEEEecCCC--ccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHH
Q 014320 198 NSFKFFMAYKGS--FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRA 275 (427)
Q Consensus 198 ~~ik~~~~~~~~--~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~ 275 (427)
.++|.|++..+. +..+.+.+.+.+.. +.| .+|+|..+.+... ..+.+.. ..+.+.++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g---~~~~e~~~~~~~~---~~~~~~~-------------~~e~i~~~ 214 (376)
T TIGR02318 156 VDLISLMDHTPGQRQFRDLEKYREYYRG--KRG---LSDDEFDEIVEER---IARRAEY-------------GLANRSEI 214 (376)
T ss_pred cCEEEEeCCCCCcccccCHHHHHHHHHh--hcC---CCHHHHHHHHHHH---HHHHhhc-------------cHHHHHHH
Confidence 999999987543 24567666666644 566 6798887665422 2222211 14778899
Q ss_pred HHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCce-eEEcC-CCCCccc--HHH
Q 014320 276 IRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAK-YVMSP-PIRASGH--NKA 351 (427)
Q Consensus 276 ~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~-~~~~p-plr~~~~--~~~ 351 (427)
++++++.|+++ .+|.... .+.++++++.|+.+.- .| .+.+.... -.+.|.. .++.| |+|...+ +..
T Consensus 215 v~~A~~~G~~v-~sH~~~~--~e~i~~a~~~Gv~~~E--~~----~t~e~a~~-~~~~G~~v~~~~p~~~r~~~~~~~~~ 284 (376)
T TIGR02318 215 AALARARGIPL-ASHDDDT--PEHVAEAHDLGVTISE--FP----TTLEAAKE-ARSLGMQILMGAPNIVRGGSHSGNLS 284 (376)
T ss_pred HHHHHHCCCeE-EEecCCC--HHHHHHHHHCCCChhc--cC----CCHHHHHH-HHHcCCeEEECCccccccccccchHH
Confidence 99999999987 8887321 2457888888874332 11 11111100 0111233 44445 6777666 789
Q ss_pred HHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 352 LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 352 l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
+|++++.|++++++|||.|.. .++.++.......+++++++++++|.|||++
T Consensus 285 l~~~~~~G~~~~l~SD~~p~~-----------------------~l~~~~~~~~~~~gl~~~~al~~~T~npA~~ 336 (376)
T TIGR02318 285 ARELAHEGLLDVLASDYVPAS-----------------------LLLAAFQLADDVEGIPLPQAVKMVTKNPARA 336 (376)
T ss_pred HHHHHHCCCcEEEEcCCCcHH-----------------------HHHHHHHHHHhhcCCCHHHHHHHHhHHHHHH
Confidence 999999999999999997742 1223332223334699999999999999985
|
This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs. |
| >PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-30 Score=254.30 Aligned_cols=313 Identities=19% Similarity=0.221 Sum_probs=202.8
Q ss_pred cEEEECcEEEcCCC----ceeeeEEEeCCeEEEeeCCCC--CCCCceEEeCCCCEEeccccccccccccCcCC-------
Q 014320 54 KILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNIN--VGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG------- 120 (427)
Q Consensus 54 ~~~i~~~~i~~~~~----~~~~~i~i~~g~I~~vg~~~~--~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g------- 120 (427)
+++|+|++|++.+. .++++|+|+||+|++||+... .+++.++||++|++|||||||+|+|+.+....
T Consensus 2 ~~li~~~~v~t~~~~~~~~~~g~V~i~~g~I~~vg~~~~~~~~~~~~viD~~g~~i~PGlVn~H~H~~~~~~rg~~~~~~ 81 (435)
T PRK15493 2 KTTYVNATIVTMNEQNEVIENGYIIVENDQIIDVNSGEFASDFEVDEVIDMKGKWVLPGLVNTHTHVVMSLLRGIGDDML 81 (435)
T ss_pred eEEEEccEEEEeCCCCcEecCcEEEEECCEEEEEcCccccccCCCCeEEeCCCCEEccceeecccCccchhhhccCCCCC
Confidence 47899999998663 357899999999999998532 22357899999999999999999999764211
Q ss_pred --------------CCChhhHHH----HHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceec-cccCCC
Q 014320 121 --------------SETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM-AITKWD 181 (427)
Q Consensus 121 --------------~~~~e~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 181 (427)
..+++..+. +...++++||||+.|+............+...+.+.|..+...... ......
T Consensus 82 l~~wl~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~~~~~~~~~ 161 (435)
T PRK15493 82 LQPWLETRIWPLESQFTPELAVASTELGLLEMVKSGTTSFSDMFNPIGVDQDAIMETVSRSGMRAAVSRTLFSFGTKEDE 161 (435)
T ss_pred HHHHHHhchhhchhcCCHHHHHHHHHHHHHHHHhCCccEEEccccccccCHHHHHHHHHHcCCcEEEeeeecCCCCCccH
Confidence 012233222 3455699999999998643222234455666777777544432221 111112
Q ss_pred hhhHHHHHHHHHH-cC-CCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-CChhhHHHHHHHHHHcCCCCccc
Q 014320 182 EVVSDEMEVMVKE-KG-INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITGPEG 258 (427)
Q Consensus 182 ~~~~~~~~~l~~~-~g-~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~~l~~~G~~~~~~ 258 (427)
.+.+++..+++++ .+ ...++..+.+++++.++++.++++++.|+++|+++++|+ |+..++..+.+. .|..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~t~s~e~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~---~g~~---- 234 (435)
T PRK15493 162 KKAIEEAEKYVKRYYNESGMLTTMVAPHSPYTCSTELLEECARIAVENQTMVHIHLSETEREVRDIEAQ---YGKR---- 234 (435)
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEeCCCCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHH---hCCC----
Confidence 2333444444432 22 356889999999999999999999999999999999997 776555443321 1210
Q ss_pred ccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeE
Q 014320 259 HALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYV 338 (427)
Q Consensus 259 ~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~ 338 (427)
| + +.+......+.++.+.|+...+. +.++.+++.|+.|+. ||...+. .+..
T Consensus 235 -----~-------~-~~l~~~Gll~~~~~~~H~~~l~~-~d~~~la~~g~~v~~--~P~sn~~-----------l~~g-- 285 (435)
T PRK15493 235 -----P-------V-EYAASCGLFKRPTVIAHGVVLND-NERAFLAEHDVRVAH--NPNSNLK-----------LGSG-- 285 (435)
T ss_pred -----H-------H-HHHHHcCCCCCCcEEEEeecCCH-HHHHHHHHcCCeEEE--ChHHHHH-----------HhcC--
Confidence 0 0 11111122345667888877664 567888899988775 7753221 1111
Q ss_pred EcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHh--cCCCCHHHHH
Q 014320 339 MSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVE--SGQISVTDYV 416 (427)
Q Consensus 339 ~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~--~~~l~l~~~v 416 (427)
.+| +.++++.|+.+++|||+.+.+...+.+ .+.+++.++.+.+. ...+++++++
T Consensus 286 -~~p---------~~~~~~~Gv~v~lGtD~~~~~~~~d~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~l 341 (435)
T PRK15493 286 -IAN---------VKAMLEAGIKVGIATDSVASNNNLDMF--------------EEMRIATLLQKGIHQDATALPVETAL 341 (435)
T ss_pred -ccc---------HHHHHHCCCeEEEccCccccCCCcCHH--------------HHHHHHHHHHhhccCCCCcCCHHHHH
Confidence 244 455899999999999975432222211 24556555544322 3479999999
Q ss_pred HHHchhhhcC
Q 014320 417 RLTSTEWGRL 426 (427)
Q Consensus 417 ~~~t~npA~~ 426 (427)
+++|.|||+.
T Consensus 342 ~~aT~~gA~~ 351 (435)
T PRK15493 342 TLATKGAAEV 351 (435)
T ss_pred HHHhHHHHHH
Confidence 9999999974
|
|
| >PRK06687 chlorohydrolase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-30 Score=253.79 Aligned_cols=312 Identities=18% Similarity=0.201 Sum_probs=199.8
Q ss_pred EEEECcEEEcCCC----ceeeeEEEeCCeEEEeeCCCCC--CCCceEEeCCCCEEeccccccccccccCcCC--------
Q 014320 55 ILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPHTHLAMEFMG-------- 120 (427)
Q Consensus 55 ~~i~~~~i~~~~~----~~~~~i~i~~g~I~~vg~~~~~--~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g-------- 120 (427)
++|+|++|++.+. .++++|+|+||+|++||+..+. +...++||++|++|+|||||+|+|+.+....
T Consensus 2 ~~~~n~~vvt~d~~~~~~~~g~VlV~~g~I~aVg~~~~~~~~~~~~viD~~g~~v~PGlIn~H~H~~~~~~rg~~~~~~~ 81 (419)
T PRK06687 2 KVFQHVNIVTCDQDFHVYLDGILAVKDSQIVYVGQDKPAFLEQAEQIIDYQGAWIMPGLVNCHTHSAMTGLRGIRDDSNL 81 (419)
T ss_pred cceEeeEEEEeCCCceEecCcEEEEECCEEEEecCcccccccccCeEEeCCCCEEccceeeeccCCCccccccccCCCCH
Confidence 4799999999775 2568999999999999986432 2346899999999999999999999876321
Q ss_pred -------------CCChhhHHH----HHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceeccccCCChh
Q 014320 121 -------------SETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEV 183 (427)
Q Consensus 121 -------------~~~~e~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (427)
..+++..+. +...++++||||+.|+...........++..++.+.+..+...+........++
T Consensus 82 ~~wl~~~~~~~~~~~~~~~~~~~~~~a~~e~l~~GvTTv~d~~~~~~~~~~~~~~a~~~~Gir~~~~~~~~~~~~~~~~~ 161 (419)
T PRK06687 82 HEWLNDYIWPAESEFTPDMTTNAVKEALTEMLQSGTTTFNDMYNPNGVDIQQIYQVVKTSKMRCYFSPTLFSSETETTAE 161 (419)
T ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHHHhcCcceeehhhccccccHHHHHHHHHHhCCceEeccccccCCcccHHH
Confidence 012233333 234459999999999864322234556677777776654433222211122233
Q ss_pred hHHHHHHHHHH---cCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-CChhhHHHHHHHHHHcCCCCcccc
Q 014320 184 VSDEMEVMVKE---KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITGPEGH 259 (427)
Q Consensus 184 ~~~~~~~l~~~---~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~~l~~~G~~~~~~~ 259 (427)
.+++..+++++ .+...++++++++.++.++++.++++++.|+++|+++++|+ |+..+.....+. .|..
T Consensus 162 ~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~i~~H~~e~~~e~~~~~~~---~g~~----- 233 (419)
T PRK06687 162 TISRTRSIIDEILKYKNPNFKVMVAPHSPYSCSRDLLEASLEMAKELNIPLHVHVAETKEESGIILKR---YGKR----- 233 (419)
T ss_pred HHHHHHHHHHHHhccCCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHH---HCcC-----
Confidence 34455555432 23456899999999999999999999999999999999997 665444333221 1210
Q ss_pred cccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEE
Q 014320 260 ALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVM 339 (427)
Q Consensus 260 ~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~ 339 (427)
| + +.++.....+.++.+.|+...+. +.++++++.|+.++. ||..... .+. .
T Consensus 234 ----~-------~-~~l~~~g~l~~~~~~~H~~~~~~-~~~~~la~~g~~v~~--~P~sn~~-----------l~~---g 284 (419)
T PRK06687 234 ----P-------L-AFLEELGYLDHPSVFAHGVELNE-REIERLASSQVAIAH--NPISNLK-----------LAS---G 284 (419)
T ss_pred ----H-------H-HHHHHcCCCCCCeEEEEEecCCH-HHHHHHHHcCCeEEE--CcHHhhh-----------hcc---C
Confidence 0 0 11111122344567888877654 668888999988776 7752211 111 1
Q ss_pred cCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHh--cCCCCHHHHHH
Q 014320 340 SPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVE--SGQISVTDYVR 417 (427)
Q Consensus 340 ~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~--~~~l~l~~~v~ 417 (427)
.+| +.++++.|+.+++|||..+.+...+.+ .+.++...+.+... ...++++++++
T Consensus 285 ~~p---------~~~~~~~Gv~v~lGtD~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~ 341 (419)
T PRK06687 285 IAP---------IIQLQKAGVAVGIATDSVASNNNLDMF--------------EEGRTAALLQKMKSGDASQFPIETALK 341 (419)
T ss_pred CCc---------HHHHHHCCCeEEEeCCCCCCCCChhHH--------------HHHHHHHHHhccccCCCccCCHHHHHH
Confidence 244 455899999999999974432222111 12333333322111 12589999999
Q ss_pred HHchhhhcC
Q 014320 418 LTSTEWGRL 426 (427)
Q Consensus 418 ~~t~npA~~ 426 (427)
++|.|||+.
T Consensus 342 ~aT~~gA~~ 350 (419)
T PRK06687 342 VLTIEGAKA 350 (419)
T ss_pred HHhHHHHHH
Confidence 999999984
|
|
| >PRK07228 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=246.31 Aligned_cols=311 Identities=21% Similarity=0.267 Sum_probs=195.7
Q ss_pred cEEEECcEEEcCCC---ceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcC-CC--------
Q 014320 54 KILIKGGTVVNAHH---QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS-------- 121 (427)
Q Consensus 54 ~~~i~~~~i~~~~~---~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~-g~-------- 121 (427)
+++|+|++|+++++ .++++|+|+||+|++|++....+...++||++|++|||||||+|+|+.++.. +.
T Consensus 2 ~~~i~~~~vi~~~~~~~~~~g~V~I~dg~I~~vg~~~~~~~~~~vID~~G~~vlPGlId~H~H~~~~~~~g~~~~~~~~~ 81 (445)
T PRK07228 2 TILIKNAGIVTMNAKREIVDGDVLIEDDRIAAVGDRLDLEDYDDHIDATGKVVIPGLIQGHIHLCQTLFRGIADDLELLD 81 (445)
T ss_pred eEEEEccEEEecCCCcEecccEEEEECCEEEEecCCcccCcCCeEEeCCCCEEecCEEecccCCccccceeccCCCCHHH
Confidence 47999999999763 5689999999999999986543335789999999999999999999976521 11
Q ss_pred ------------CChhhHH----HHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceec-------ccc
Q 014320 122 ------------ETIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM-------AIT 178 (427)
Q Consensus 122 ------------~~~e~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 178 (427)
.++++.+ .+...++++||||++|+.... .....++...+.+.+......+.. ...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~a~~~~~e~L~~GvTtv~d~~~~~--~~~~~~~a~~~~g~r~~~~~~~~~~~~~~p~~~~ 159 (445)
T PRK07228 82 WLKDRIWPLEAAHDAESMYYSALLGIGELIESGTTTIVDMESVH--HTDSAFEAAGESGIRAVLGKVMMDYGDDVPEGLQ 159 (445)
T ss_pred HHHhhhhhhhhhCCHHHHHHHHHHHHHHHHhcCceEEEcccccc--ChHHHHHHHHHcCCeEEEecceecCCcCCCcccc
Confidence 0112222 223456899999999986432 123455666666655322211110 001
Q ss_pred CCChhhHHHHHHHHHH-cCCC--eEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-CChhhHHHHHHHHHHcCCC
Q 014320 179 KWDEVVSDEMEVMVKE-KGIN--SFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGIT 254 (427)
Q Consensus 179 ~~~~~~~~~~~~l~~~-~g~~--~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~~l~~~G~~ 254 (427)
...++.+++..++++. .|.. .+...+.++....++++.++++++.|+++|+++++|+ |+...+....+ ..|..
T Consensus 160 ~~~~~~l~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~~---~~g~~ 236 (445)
T PRK07228 160 EDTEASLAESVRLLEKWHGADNGRIRYAFTPRFAVSCTEELLRGVRDLADEYGVRIHTHASENRGEIETVEE---ETGMR 236 (445)
T ss_pred ccHHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHH---HhCCC
Confidence 1122334455555533 2432 3444456666677899999999999999999999998 66554433221 12321
Q ss_pred CcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccC
Q 014320 255 GPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTA 334 (427)
Q Consensus 255 ~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~ 334 (427)
.+ +.++.....+.++.++|+...+. +.++++++.|+.++. ||.... ..+
T Consensus 237 ----------------~~-~~l~~~g~~~~~~~l~H~~~~~~-~~~~~~~~~g~~v~~--~P~~~~-----------~~~ 285 (445)
T PRK07228 237 ----------------NI-HYLDEVGLTGEDLILAHCVWLDE-EEREILAETGTHVTH--CPSSNL-----------KLA 285 (445)
T ss_pred ----------------HH-HHHHHCCCCCCCcEEEEEecCCH-HHHHHHHHcCCeEEE--ChHHhh-----------hcc
Confidence 00 11111223356788999986654 557788888987764 775211 000
Q ss_pred ceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHh--cCCCCH
Q 014320 335 AKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVE--SGQISV 412 (427)
Q Consensus 335 ~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~--~~~l~l 412 (427)
. ..+ .++++++.|+++++|||+.+++...+.+ .+.++..++..... ...+++
T Consensus 286 ~---~~~---------p~~~~~~~Gv~v~lGtD~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~s~ 339 (445)
T PRK07228 286 S---GIA---------PVPDLLERGINVALGADGAPCNNTLDPF--------------TEMRQAALIQKVDRLGPTAMPA 339 (445)
T ss_pred c---ccC---------cHHHHHHCCCeEEEcCCCCccCCCccHH--------------HHHHHHHHHhhhccCCCcccCH
Confidence 0 012 3678999999999999987654322211 23344444432211 136999
Q ss_pred HHHHHHHchhhhcC
Q 014320 413 TDYVRLTSTEWGRL 426 (427)
Q Consensus 413 ~~~v~~~t~npA~~ 426 (427)
+++++++|.|||+.
T Consensus 340 ~~al~~~T~~~A~~ 353 (445)
T PRK07228 340 RTVFEMATLGGAKA 353 (445)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999975
|
|
| >cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-29 Score=246.70 Aligned_cols=309 Identities=26% Similarity=0.332 Sum_probs=195.6
Q ss_pred EEEECcEEEcCC---CceeeeEEEeCCeEEEeeCCCCCC--CCceEEeCCCCEEeccccccccccccCcC-C--------
Q 014320 55 ILIKGGTVVNAH---HQQIADVYVEDGIVVAVQPNINVG--DDVKVLDATGKFVMPGGIDPHTHLAMEFM-G-------- 120 (427)
Q Consensus 55 ~~i~~~~i~~~~---~~~~~~i~i~~g~I~~vg~~~~~~--~~~~viD~~g~~v~PG~ID~H~H~~~~~~-g-------- 120 (427)
++|+|++|++++ ...+++|+|+||||++|++..+.+ ++.++||++|++|+|||||+|+|+.++.. +
T Consensus 1 ~~i~~~~v~~~~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~~viD~~g~~i~PGlid~H~Hl~~~~~~~~~~~~~~~ 80 (411)
T cd01298 1 ILIRNGTIVTTDPRRVLEDGDVLVEDGRIVAVGPALPLPAYPADEVIDAKGKVVMPGLVNTHTHLAMTLLRGLADDLPLM 80 (411)
T ss_pred CeEEeeEEEEeCCcceeecceEEEECCEEEEecCccccccCCcCeEEeCCCCEEccCccccccchhhHHhhcccCCCCHH
Confidence 379999999975 256889999999999999865432 45789999999999999999999875311 1
Q ss_pred ------------CCChhhHHHH----HHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceecccc---CCC
Q 014320 121 ------------SETIDDFFSG----QAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAIT---KWD 181 (427)
Q Consensus 121 ------------~~~~e~~~~~----~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 181 (427)
..++++++.. +..++++||||++|+..... ....+...+.+.+..+...+..... ...
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~---~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~ 157 (411)
T cd01298 81 EWLKDLIWPLERLLTEEDVYLGALLALAEMIRSGTTTFADMYFFYP---DAVAEAAEELGIRAVLGRGIMDLGTEDVEET 157 (411)
T ss_pred HHHHhhhhhhhhcCCHHHHHHHHHHHHHHHHhcCccEEECccccch---HHHHHHHHHhCCeEEEEcceecCCCcccccH
Confidence 1223444433 34467899999999864322 2333444444544333322211110 111
Q ss_pred hhhHHHHHHHHHH---cCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-CChhhHHHHHHHHHHcCCCCcc
Q 014320 182 EVVSDEMEVMVKE---KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITGPE 257 (427)
Q Consensus 182 ~~~~~~~~~l~~~---~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~~l~~~G~~~~~ 257 (427)
.+..+++.+++++ .|.+.+|++++++.+..++++++.++++.|+++|+++++|+ ++....+...+ ..|..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~---~~~~~--- 231 (411)
T cd01298 158 EEALAEAERLIREWHGAADGRIRVALAPHAPYTCSDELLREVAELAREYGVPLHIHLAETEDEVEESLE---KYGKR--- 231 (411)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEeCCCCccCCHHHHHHHHHHHHHcCCcEEEEecCCHHHHHHHHH---HhCCC---
Confidence 2334445554432 24678999998887777899999999999999999999996 66544433221 12211
Q ss_pred cccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCcee
Q 014320 258 GHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKY 337 (427)
Q Consensus 258 ~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~ 337 (427)
.++. +......+.++.+.|+..... +.++++++.|+.+. +||...+. + +.
T Consensus 232 -------------~~~~-~~~~~~~~~~~~i~H~~~l~~-~~~~~l~~~gi~~~--~~p~~~~~----~-------~~-- 281 (411)
T cd01298 232 -------------PVEY-LEELGLLGPDVVLAHCVWLTD-EEIELLAETGTGVA--HNPASNMK----L-------AS-- 281 (411)
T ss_pred -------------HHHH-HHHcCCCCCCeEEEEecCCCH-HHHHHHHHcCCeEE--EChHHhhh----h-------hh--
Confidence 0111 111122356778899887664 67888899886554 58863211 0 01
Q ss_pred EEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhc--CCCCHHHH
Q 014320 338 VMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVES--GQISVTDY 415 (427)
Q Consensus 338 ~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~--~~l~l~~~ 415 (427)
..+| ++++++.|+.+++|||+.++....+. -.+..++.++...... .++++.++
T Consensus 282 -~~~~---------~~~~~~~Gv~~~~GsD~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~a 337 (411)
T cd01298 282 -GIAP---------VPEMLEAGVNVGLGTDGAASNNNLDM--------------FEEMRLAALLQKLAHGDPTALPAEEA 337 (411)
T ss_pred -CCCC---------HHHHHHCCCcEEEeCCCCccCCCcCH--------------HHHHHHHHHHhccccCCCCcCCHHHH
Confidence 1244 56699999999999998543211110 1133444333222211 26999999
Q ss_pred HHHHchhhhcC
Q 014320 416 VRLTSTEWGRL 426 (427)
Q Consensus 416 v~~~t~npA~~ 426 (427)
++++|.|||+.
T Consensus 338 l~~~T~~~A~~ 348 (411)
T cd01298 338 LEMATIGGAKA 348 (411)
T ss_pred HHHHHhhHHHH
Confidence 99999999984
|
Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD. |
| >PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-27 Score=236.38 Aligned_cols=312 Identities=18% Similarity=0.204 Sum_probs=198.3
Q ss_pred EEEECcEEEcCCC----ceeeeEEEeCCeEEEeeCCCCCC-CCceEEeCCCCEEeccccccccccccCcC-CC-------
Q 014320 55 ILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNINVG-DDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS------- 121 (427)
Q Consensus 55 ~~i~~~~i~~~~~----~~~~~i~i~~g~I~~vg~~~~~~-~~~~viD~~g~~v~PG~ID~H~H~~~~~~-g~------- 121 (427)
+++.|+.|+++++ ..+++|+|+||||++|++..+.+ ++.++||++|++|||||||+|+|+.+... +.
T Consensus 4 ~i~~~~~v~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~~~~~~~~~vID~~g~~v~PGlVn~H~H~~~~~~~g~~~~~~~~ 83 (451)
T PRK08203 4 WIKNPLAIVTMDAARREIADGGLVVEGGRIVEVGPGGALPQPADEVFDARGHVVTPGLVNTHHHFYQTLTRALPAAQDAE 83 (451)
T ss_pred EEEeccEEEEeCCCceEeeccEEEEECCEEEEEeCCccCCCCCCeEEeCCCCEEecceEeccccccchhcccccccCCCc
Confidence 4555578998775 35789999999999999875533 35689999999999999999999987522 11
Q ss_pred --------------CChhhHH----HHHHHHHcCCceEEecCcCCCCC----cHHHHHHHHHHHhccccceecee-----
Q 014320 122 --------------ETIDDFF----SGQAAALAGGTTMHIDFVIPING----SLTAGFEAYEKKAKNSCMDYGFH----- 174 (427)
Q Consensus 122 --------------~~~e~~~----~~~~~~l~~GvTtv~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~----- 174 (427)
.++++++ .+...++++||||++|+....+. .....++...+.+.|..+.....
T Consensus 84 ~~~~~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~~~~~~ 163 (451)
T PRK08203 84 LFPWLTTLYPVWARLTPEMVRVATQTALAELLLSGCTTSSDHHYLFPNGLRDALDDQIEAAREIGMRFHATRGSMSLGES 163 (451)
T ss_pred HHHHHHHHhHHHHhCCHHHHHHHHHHHHHHHHhcCcCEEEcceeeccccccchHHHHHHHHHHcCCeEEEecceeecCCc
Confidence 1122222 23345689999999998532111 24556677777776654332211
Q ss_pred -cccc-----CCChhhHHHHHHHHHH-cC---CCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-CChhhHHH
Q 014320 175 -MAIT-----KWDEVVSDEMEVMVKE-KG---INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFE 243 (427)
Q Consensus 175 -~~~~-----~~~~~~~~~~~~l~~~-~g---~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~ 243 (427)
.... ...++.++..++++++ .+ ...+++.+++++++.+++++++++++.|+++|+++++|+ |.......
T Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~ 243 (451)
T PRK08203 164 DGGLPPDSVVEDEDAILADSQRLIDRYHDPGPGAMLRIALAPCSPFSVSRELMRESAALARRLGVRLHTHLAETLDEEAF 243 (451)
T ss_pred cCCCCccccccCHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHH
Confidence 0000 1123344555555532 11 256888888888888999999999999999999999996 66555443
Q ss_pred HHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCc
Q 014320 244 GQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDD 323 (427)
Q Consensus 244 ~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~ 323 (427)
+.+ ..|.. .+.. +......+.++.+.|+...+. +.++++++.|+.++. ||.....
T Consensus 244 ~~~---~~g~~----------------~~~~-l~~~g~l~~~~~~~H~~~l~~-~~~~~la~~g~~v~~--~P~~~~~-- 298 (451)
T PRK08203 244 CLE---RFGMR----------------PVDY-LEDLGWLGPDVWLAHCVHLDD-AEIARLARTGTGVAH--CPCSNMR-- 298 (451)
T ss_pred HHH---HhCCC----------------HHHH-HHHcCCCCCCeEEEEEeCCCH-HHHHHHHhcCCeEEE--CcHHhhh--
Confidence 322 12221 0111 111122345677888877664 668888999987765 7742211
Q ss_pred ccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHH
Q 014320 324 SWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDT 403 (427)
Q Consensus 324 ~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~ 403 (427)
.+. ..+| ++++++.|+.+++|||+.+.+...+. -.+++++.++..
T Consensus 299 ---------l~~---~~~~---------~~~~~~~Gv~v~lGtD~~~~~~~~~~--------------~~~~~~~~~~~~ 343 (451)
T PRK08203 299 ---------LAS---GIAP---------VRELRAAGVPVGLGVDGSASNDGSNL--------------IGEARQALLLQR 343 (451)
T ss_pred ---------hcc---CCCC---------HHHHHHCCCeEEEecCCCccCCCcCH--------------HHHHHHHHHHhh
Confidence 000 1234 45689999999999997433211111 124455544432
Q ss_pred HHh-cCCCCHHHHHHHHchhhhcC
Q 014320 404 MVE-SGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 404 ~~~-~~~l~l~~~v~~~t~npA~~ 426 (427)
... ...+++.++++++|.|||+.
T Consensus 344 ~~~~~~~i~~~~~l~~~T~~~A~~ 367 (451)
T PRK08203 344 LRYGPDAMTAREALEWATLGGARV 367 (451)
T ss_pred cccCCCCCCHHHHHHHHHHHHHHH
Confidence 211 24699999999999999984
|
|
| >PRK09045 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-27 Score=234.89 Aligned_cols=310 Identities=20% Similarity=0.195 Sum_probs=196.2
Q ss_pred ccEEEECcEEEcCCC----ceeeeEEEeCCeEEEeeCCCCC---CCCceEEeCCCCEEeccccccccccccCcC-CC---
Q 014320 53 SKILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS--- 121 (427)
Q Consensus 53 ~~~~i~~~~i~~~~~----~~~~~i~i~~g~I~~vg~~~~~---~~~~~viD~~g~~v~PG~ID~H~H~~~~~~-g~--- 121 (427)
.+++|+|+.|++++. .++++|+|+||||++||+.... .++.++||++|++|||||||+|+|+.++.. |.
T Consensus 7 ~~~li~~~~v~~~~~~~~~~~~~~v~i~~g~I~~Vg~~~~~~~~~~~~~~iD~~g~~v~PG~id~H~Hl~~~~~~g~~~~ 86 (443)
T PRK09045 7 VDLLIEARWIVPVEPAGVVLEDHAVAIRDGRIVAILPRAEARARYAAAETVELPDHVLIPGLINAHTHAAMSLLRGLADD 86 (443)
T ss_pred ccEEEEccEEEEeCCCceEeeccEEEEECCEEEEecCcccccccCCcceEEeCCCCEEecCEeccccChhhHhhhhccCC
Confidence 579999999998663 3578999999999999986432 135689999999999999999999976421 10
Q ss_pred ------------------CChhhHH----HHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceecc---
Q 014320 122 ------------------ETIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMA--- 176 (427)
Q Consensus 122 ------------------~~~e~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 176 (427)
.+++..+ .+...++++||||+.|+... ....++...+.+.|..+.......
T Consensus 87 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~G~Ttv~d~~~~----~~~~~~~~~~~G~R~~~~~~~~~~~~~ 162 (443)
T PRK09045 87 LPLMTWLQDHIWPAEGAWVSEEFVRDGTLLAIAEMLRGGTTCFNDMYFF----PEAAAEAAHQAGMRAQIGMPVLDFPTA 162 (443)
T ss_pred CCHHHHHHhhhhhhhhccCCHHHHHHHHHHHHHHHHhcCCcEEEecccc----HHHHHHHHHHcCCeEEEecccccCCCc
Confidence 0122222 23445689999999997421 122345555555554333222110
Q ss_pred ccCCChhhHHHHHHHHH-HcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-CChhhHHHHHHHHHHcCCC
Q 014320 177 ITKWDEVVSDEMEVMVK-EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGIT 254 (427)
Q Consensus 177 ~~~~~~~~~~~~~~l~~-~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~~l~~~G~~ 254 (427)
.....++.+++..++.+ +.+.+.+++.+.+++++.++++.++++++.|+++|+++++|+ ++.+++.... +..|..
T Consensus 163 ~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~---~~~g~~ 239 (443)
T PRK09045 163 WASDADEYLAKGLELHDQWRHHPLISTAFAPHAPYTVSDENLERIRTLAEQLDLPIHIHLHETAQEIADSL---KQHGQR 239 (443)
T ss_pred cccCHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEeecCcHHHHHHHH---HHhCCC
Confidence 01112233343333332 346678999999998889999999999999999999999997 5554443332 222321
Q ss_pred CcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccC
Q 014320 255 GPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTA 334 (427)
Q Consensus 255 ~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~ 334 (427)
.++.. ......+.++.+.|+...+. +.++.+++.|+.++. ||..... + +
T Consensus 240 ----------------~~~~l-~~~g~l~~r~~~~H~~~l~~-~~~~~la~~g~~i~~--~P~~~~~----~-------~ 288 (443)
T PRK09045 240 ----------------PLARL-ARLGLLGPRLIAVHMTQLTD-AEIALLAETGCSVVH--CPESNLK----L-------A 288 (443)
T ss_pred ----------------HHHHH-HHcCCCCCCeEEEEecCCCH-HHHHHHHHcCCeEEE--CHHHHhh----h-------c
Confidence 01111 11122345677888887654 567888888977765 7742110 0 0
Q ss_pred ceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHh--cCCCCH
Q 014320 335 AKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVE--SGQISV 412 (427)
Q Consensus 335 ~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~--~~~l~l 412 (427)
. ..+| +.++++.|+.+++|||+.+.....+.+ .+.++..++..... ..++++
T Consensus 289 ~---~~~~---------~~~l~~~Gv~v~lGtD~~~~~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~ 342 (443)
T PRK09045 289 S---GFCP---------VAKLLQAGVNVALGTDGAASNNDLDLF--------------GEMRTAALLAKAVAGDATALPA 342 (443)
T ss_pred c---CCCc---------HHHHHHCCCeEEEecCCCCCCCCccHH--------------HHHHHHHHHHhhccCCCCcCCH
Confidence 0 1133 456888999999999985433222211 24444444333221 346999
Q ss_pred HHHHHHHchhhhcC
Q 014320 413 TDYVRLTSTEWGRL 426 (427)
Q Consensus 413 ~~~v~~~t~npA~~ 426 (427)
+++++++|.|||+.
T Consensus 343 ~~al~~~T~~~A~~ 356 (443)
T PRK09045 343 HTALRMATLNGARA 356 (443)
T ss_pred HHHHHHHhHHHHHH
Confidence 99999999999974
|
|
| >PRK12394 putative metallo-dependent hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.4e-27 Score=228.50 Aligned_cols=289 Identities=15% Similarity=0.171 Sum_probs=183.3
Q ss_pred CccEEEECcEEEcCCC--ceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHH
Q 014320 52 SSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS 129 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~--~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~ 129 (427)
+.+++|+|++|+++.. ....+|+|+||||++|++... +.+.++||++|++|+|||||+|+|+... +. +...+
T Consensus 2 ~~~~li~~~~i~~~~~~~~~~~~i~i~~g~I~~i~~~~~-~~~~~viD~~g~~v~PGliD~H~H~~~~--g~---~~~~~ 75 (379)
T PRK12394 2 KNDILITNGHIIDPARNINEINNLRIINDIIVDADKYPV-ASETRIIHADGCIVTPGLIDYHAHVFYD--GT---EGGVR 75 (379)
T ss_pred CccEEEECcEEECCCCCcccccEEEEECCEEEEEcCCCC-CCCCeEEECCCCEEECCEEEeeecCCCC--Cc---ccccC
Confidence 4578999999998653 356789999999999987432 2345899999999999999999998654 32 11222
Q ss_pred HHHHHHcCCceEEecCcCCCCCcHHHHHHH----HHHHhccccceeceeccccC----CCh-h--hHHHHHHHHHH--cC
Q 014320 130 GQAAALAGGTTMHIDFVIPINGSLTAGFEA----YEKKAKNSCMDYGFHMAITK----WDE-V--VSDEMEVMVKE--KG 196 (427)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~----~~~-~--~~~~~~~l~~~--~g 196 (427)
....++++||||++|++...... .+.+.. ..+.+.+..+++++.+.... ... . ..++.++++++ .+
T Consensus 76 ~~~~~l~~G~Ttv~d~g~~~~~~-~~~~~~~~~a~~~~gira~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (379)
T PRK12394 76 PDMYMPPNGVTTVVDAGSAGTAN-FDAFYRTVICASKVRIKAFLTVSPPGQTWSGYQENYDPDNIDENKIHALFRQYRNV 154 (379)
T ss_pred HHHHHHhCCccEEEECCCCCccc-HHHHHHHHhhhhcceeeeEEeeecccccccCcccccChhHCCHHHHHHHHHHCcCc
Confidence 34568999999999987443222 222222 22333455566555432211 011 1 13566666643 35
Q ss_pred CCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChh-hHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHH
Q 014320 197 INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGD-AVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRA 275 (427)
Q Consensus 197 ~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~-~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~ 275 (427)
+.++|+++........+++.+++.++.|+++|+++++|+++.. ..... .+++
T Consensus 155 ~~g~ki~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~iH~~e~~~~~~~~------~~~l--------------------- 207 (379)
T PRK12394 155 LQGLKLRVQTEDIAEYGLKPLTETLRIANDLRCPVAVHSTHPVLPMKEL------VSLL--------------------- 207 (379)
T ss_pred EEEEEEEEecccccccchHHHHHHHHHHHHcCCCEEEEeCCCCccHHHH------HHhc---------------------
Confidence 6678877654332356799999999999999999999985432 21110 1111
Q ss_pred HHHHHhcCCCEEEEcC----------CCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCC
Q 014320 276 IRLAEFVNTPLYVVHV----------MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRA 345 (427)
Q Consensus 276 ~~~~~~~g~~~~i~H~----------~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~ 345 (427)
+....+.|+ ......+.+++++++|+.+.. .++ ++
T Consensus 208 -------~~g~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~-~~g---------------------------~s 252 (379)
T PRK12394 208 -------RRGDIIAHAFHGKGSTILTEEGAVLAEVRQARERGVIFDA-ANG---------------------------RS 252 (379)
T ss_pred -------CCCCEEEecCCCCCCCcCCCCCCChHHHHHHHhCCeEEEe-cCC---------------------------cc
Confidence 111123333 232335677888888863322 111 11
Q ss_pred cccHHHHHHHHhcCC-ceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhh
Q 014320 346 SGHNKALQAALATGI-LQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWG 424 (427)
Q Consensus 346 ~~~~~~l~~~l~~G~-~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA 424 (427)
..+.+.+|+++++|. +++||||+.|.+...+. ...++.++.+.. ..+++++++++++|.|||
T Consensus 253 ~~~~~~~~~~l~~G~~~~~lgTD~~~~~~~~~~----------------~~~l~~~~~~~~-~~~~~~~~~~~~at~~~a 315 (379)
T PRK12394 253 HFDMNVARRAIANGFLPDIISSDLSTITKLAWP----------------VYSLPWVLSKYL-ALGMALEDVINACTHTPA 315 (379)
T ss_pred ccchHHHHHHHHCCCCceEEECCCCCCCcccCc----------------cchHHHHHHHHH-HcCCCHHHHHHHHHHHHH
Confidence 224466889999995 89999999887632110 124455665544 456999999999999999
Q ss_pred cC
Q 014320 425 RL 426 (427)
Q Consensus 425 ~~ 426 (427)
++
T Consensus 316 ~~ 317 (379)
T PRK12394 316 VL 317 (379)
T ss_pred HH
Confidence 84
|
|
| >PRK06380 metal-dependent hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-26 Score=226.25 Aligned_cols=308 Identities=21% Similarity=0.275 Sum_probs=191.7
Q ss_pred cEEEECcEEEcCCC---ceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcC-C---------
Q 014320 54 KILIKGGTVVNAHH---QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G--------- 120 (427)
Q Consensus 54 ~~~i~~~~i~~~~~---~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~-g--------- 120 (427)
+++|+|++|++.+. ..+++|+|+||||++||+... ...++||++|++|+|||||+|+|+.+... +
T Consensus 2 ~~li~~~~v~~~~~~~~~~~~~v~i~~g~I~~ig~~~~--~~~~viD~~g~~v~PG~Vd~H~Hl~~~~~rg~~~~~~l~~ 79 (418)
T PRK06380 2 SILIKNAWIVTQNEKREILQGNVYIEGNKIVYVGDVNE--EADYIIDATGKVVMPGLINTHAHVGMTASKGLFDDVDLEE 79 (418)
T ss_pred eEEEEeeEEEECCCCceeeeeeEEEECCEEEEecCCCC--CCCEEEECCCCEEccCEEeeccCCCccccCCcccCCCHHH
Confidence 37899999998753 357899999999999998543 34689999999999999999999987522 1
Q ss_pred ----------CCChhhHHH----HHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceecc-ccCCChhhH
Q 014320 121 ----------SETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMA-ITKWDEVVS 185 (427)
Q Consensus 121 ----------~~~~e~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 185 (427)
..++++++. +...++++||||+.|+... ....++...+.+.|..+.+..... .........
T Consensus 80 ~~~~~~~~~~~~~~e~~~~~~~~~~~e~l~~G~Tt~~d~~~~----~~~~~~a~~~~G~r~~~~~~~~~~~~~~~~~~~~ 155 (418)
T PRK06380 80 FLMKTFKYDSKRTREGIYNSAKLGMYEMINSGITAFVDLYYS----EDIIAKAAEELGIRAFLSWAVLDEEITTQKGDPL 155 (418)
T ss_pred HHHHHHhhhhcCCHHHHHHHHHHHHHHHHhcCCeEEEccccC----hHHHHHHHHHhCCeEEEecccccCCcccccchHH
Confidence 112333332 3445699999999998532 233455666666665444332211 000111122
Q ss_pred HHHHHHHHH-cCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-CChhhHHHHHHHHHHcCCCCcccccccC
Q 014320 186 DEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITGPEGHALSR 263 (427)
Q Consensus 186 ~~~~~l~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~~l~~~G~~~~~~~~~~~ 263 (427)
+...++++. .+...++..+++++...+++++++++++.|+++|+++++|+ |+.+++... ..+.|...
T Consensus 156 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~---~~~~g~~~-------- 224 (418)
T PRK06380 156 NNAENFIREHRNEELVTPSIGVQGIYVANDETYLKAKEIAEKYDTIMHMHLSETRKEVYDH---VKRTGERP-------- 224 (418)
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCccCCHHHHHHHHHHHHHcCCCEEEEeCCcHHHHHHH---HHHhCCCH--------
Confidence 333333322 22345777778888889999999999999999999999997 554444322 22334210
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCC
Q 014320 264 PPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPI 343 (427)
Q Consensus 264 p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~ppl 343 (427)
++ .+......+.++.+.|+...+. +.++.+++.|+.+.. ||..... .+. ...+|
T Consensus 225 --------ie-~~~~~g~l~~~~~~~H~~~l~~-~d~~~la~~g~~v~~--~P~sn~~-----------l~~--~g~~p- 278 (418)
T PRK06380 225 --------VE-HLEKIGFLNSKLIAAHCVWATY-HEIKLLSKNGVKVSW--NSVSNFK-----------LGT--GGSPP- 278 (418)
T ss_pred --------HH-HHHHCCCCCCCeEEEEeecCCH-HHHHHHHHcCCEEEE--CHHHHHh-----------hcc--CCCCc-
Confidence 11 1111122345677888877653 668888889977765 7753211 000 01244
Q ss_pred CCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHh--cCCCCHHHHHHHHch
Q 014320 344 RASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVE--SGQISVTDYVRLTST 421 (427)
Q Consensus 344 r~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~--~~~l~l~~~v~~~t~ 421 (427)
++++++.|+.+++|||....++..+.+ .+.++..++.+... ...+++.++++++|.
T Consensus 279 --------~~~~~~~Gv~v~lGTD~~~~~~~~d~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~ 336 (418)
T PRK06380 279 --------IPEMLDNGINVTIGTDSNGSNNSLDMF--------------EAMKFSALSVKNERWDASIIKAQEILDFATI 336 (418)
T ss_pred --------HHHHHHCCCeEEEcCCCCcCCCCcCHH--------------HHHHHHHHHhhhccCCCCcCCHHHHHHHHHH
Confidence 456899999999999974322211110 12222222211111 124899999999999
Q ss_pred hhhcC
Q 014320 422 EWGRL 426 (427)
Q Consensus 422 npA~~ 426 (427)
|+||.
T Consensus 337 ~gA~~ 341 (418)
T PRK06380 337 NAAKA 341 (418)
T ss_pred HHHHH
Confidence 99984
|
|
| >PRK07203 putative chlorohydrolase/aminohydrolase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-26 Score=226.74 Aligned_cols=308 Identities=19% Similarity=0.214 Sum_probs=191.7
Q ss_pred EEEECcEEEcCCC----ceeeeEEEeCCeEEEeeCCCCC---CCCceEEeCCCCEEeccccccccccccCcC-CC-----
Q 014320 55 ILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS----- 121 (427)
Q Consensus 55 ~~i~~~~i~~~~~----~~~~~i~i~~g~I~~vg~~~~~---~~~~~viD~~g~~v~PG~ID~H~H~~~~~~-g~----- 121 (427)
++|+|++|++.+. ..+++|+|+||+|++||+..+. .++.++||++|++|+|||||+|+|+.+... |.
T Consensus 2 ~li~~~~i~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~~~~~~~~~~~viD~~g~lv~PGfID~H~H~~~~~~rg~~~~~~ 81 (442)
T PRK07203 2 LLIGNGTAITRDPAKPVIEDGAIAIEGNVIVEIGTTDELKAKYPDAEFIDAKGKLIMPGLINSHNHIYSGLARGMMANIP 81 (442)
T ss_pred EEEECCEEEeCCCCCceeeccEEEEECCEEEEEeCchhhccccCCCeEEeCCCCEEecceeeccccchhhhhcccccccC
Confidence 5899999998543 2468999999999999964221 134689999999999999999999875421 10
Q ss_pred -------------------CChhhHHHH----HHHHHcCCceEEecCcCCCCC---cHHHHHHHHHHHhccccceeceec
Q 014320 122 -------------------ETIDDFFSG----QAAALAGGTTMHIDFVIPING---SLTAGFEAYEKKAKNSCMDYGFHM 175 (427)
Q Consensus 122 -------------------~~~e~~~~~----~~~~l~~GvTtv~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 175 (427)
.++++++.. ...++++||||++|+...... .....++...+.+.|..+.+....
T Consensus 82 ~~~~l~~~l~~~~~~~~~~~t~e~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~d 161 (442)
T PRK07203 82 PPPDFISILKNLWWRLDRALTLEDVYYSALICSLEAIKNGVTTVFDHHASPNYIGGSLFTIADAAKKVGLRAMLCYETSD 161 (442)
T ss_pred CCCCHHHHHHhheehhhhcCCHHHHHHHHHHHHHHHHHcCceEEEccccccccccchHHHHHHHHHHhCCeEEEeccccc
Confidence 122333322 245699999999998532211 223444556666655544332221
Q ss_pred cc-cCCChhhHHHHHHHHHH-cC--CCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-CChhhHHHHHHHHHH
Q 014320 176 AI-TKWDEVVSDEMEVMVKE-KG--INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIE 250 (427)
Q Consensus 176 ~~-~~~~~~~~~~~~~l~~~-~g--~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~~l~~ 250 (427)
.. .....+.+++..++++. .+ ...+...+++++++.++++.++++.+.|+++|+++++|. |+..+.....+ .
T Consensus 162 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~p~~~~~~s~~~l~~~~~lA~~~g~~i~~H~~E~~~e~~~~~~---~ 238 (442)
T PRK07203 162 RDGEKELQEGVEENIRFIKHIDEAKDDMVEAMFGLHASFTLSDATLEKCREAVKETGRGYHIHVAEGIYDVSDSHK---K 238 (442)
T ss_pred CCcchhHHHHHHHHHHHHHHhcCCCCCceEEEEccCCCcCcCHHHHHHHHHHHHHcCCcEEEEecCChHHHHHHHH---H
Confidence 10 01112233334444332 22 235778889999999999999999999999999999996 77766654432 1
Q ss_pred cCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCC
Q 014320 251 LGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSD 330 (427)
Q Consensus 251 ~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~ 330 (427)
.|.. | + +.++.....+.++.+.|+...+. +.++.+++.|+.|+. ||...+
T Consensus 239 ~g~~---------~-------v-~~l~~~Gll~~~~~~~H~~~~~~-~d~~~la~~g~~v~~--~P~sn~---------- 288 (442)
T PRK07203 239 YGKD---------I-------V-ERLADFGLLGEKTLAAHCIYLSD-EEIDLLKETDTFVVH--NPESNM---------- 288 (442)
T ss_pred cCCC---------H-------H-HHHHhCCCCCCCcEEEEeecCCH-HHHHHHHhcCCeEEE--Cchhhh----------
Confidence 2210 0 0 11111122345667888876654 667888899987776 775221
Q ss_pred cccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHh-cCC
Q 014320 331 FVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVE-SGQ 409 (427)
Q Consensus 331 ~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~-~~~ 409 (427)
..+.. .+| ++++++.|+.+++|||+...+ .+ .+.++..++.+... ...
T Consensus 289 -~l~~g---~~p---------~~~~~~~Gv~v~lGtD~~~~d----~~--------------~~~~~a~~~~~~~~~~~~ 337 (442)
T PRK07203 289 -GNAVG---YNP---------VLEMIKNGILLGLGTDGYTSD----MF--------------ESYKVANFKHKHAGGDPN 337 (442)
T ss_pred -hcccC---CCC---------HHHHHHCCCeEEEcCCCCCcc----HH--------------HHHHHHHHHhccccCCCC
Confidence 11111 244 466999999999999974321 11 13445444432211 123
Q ss_pred CCHHHHHHHHchhhhcC
Q 014320 410 ISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 410 l~l~~~v~~~t~npA~~ 426 (427)
++++++++++|.|||+.
T Consensus 338 ~~~~~~~~~aT~~gA~~ 354 (442)
T PRK07203 338 VGWPESPAMLFENNNKI 354 (442)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 45789999999999973
|
|
| >PRK09228 guanine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-26 Score=225.72 Aligned_cols=298 Identities=17% Similarity=0.116 Sum_probs=184.6
Q ss_pred eeeeEEEeCCeEEEeeCCCCC----CCCceEEeCCCCEEeccccccccccccCcCCC---------------------CC
Q 014320 69 QIADVYVEDGIVVAVQPNINV----GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS---------------------ET 123 (427)
Q Consensus 69 ~~~~i~i~~g~I~~vg~~~~~----~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~---------------------~~ 123 (427)
++++|+|+||||++||+..+. +.+.++||++|++|+|||||+|+|+.+..... .+
T Consensus 30 ~~g~I~I~~g~I~~Vg~~~~~~~~~~~~~~viD~~g~lv~PGlVn~H~H~~~~~~~g~~~~~l~~wl~~~~~~~e~~~~~ 109 (433)
T PRK09228 30 EDGLLLVEDGRIVAAGPYAELRAQLPADAEVTDYRGKLILPGFIDTHIHYPQTDMIASYGEQLLDWLNTYTFPEERRFAD 109 (433)
T ss_pred CCeEEEEECCEEEEEcChHHhhhhcCCCCeEEeCCCCEEecceecccccccchhhccCCchHHHHHHHhhhhHHHHHhCC
Confidence 478999999999999986432 22358999999999999999999987652110 01
Q ss_pred hhhHHH----HHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceecc-----ccCCChhhHHHHHHHHHH
Q 014320 124 IDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMA-----ITKWDEVVSDEMEVMVKE 194 (427)
Q Consensus 124 ~e~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~ 194 (427)
++..+. +...++++||||+.|+...........++...+.+.|..+.+++... .....++.+++..+++++
T Consensus 110 ~~~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 189 (433)
T PRK09228 110 PAYAREVAEFFLDELLRNGTTTALVFGTVHPQSVDALFEAAEARNMRMIAGKVLMDRNAPDGLRDTAESGYDDSKALIER 189 (433)
T ss_pred HHHHHHHHHHHHHHHHhCCceEEEeccccCHHHHHHHHHHHHHcCCeEEeeeeeecCCCCcccccCHHHHHHHHHHHHHH
Confidence 122222 23457999999999975332222344455556666665444333211 011122333344444432
Q ss_pred -cCCCeEEEEEecCCCccCCHHHHHHHHHHHHHc-CCcEEEec-CChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHH
Q 014320 195 -KGINSFKFFMAYKGSFMINDELLIEGFKRCKSL-GALAMVHA-ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEA 271 (427)
Q Consensus 195 -~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~-g~~v~~H~-e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a 271 (427)
.+...+++.+.++..+.++++.++++.+.|+++ |+++++|. |+..+.....+. .|. ++.
T Consensus 190 ~~~~~~~~~~~~p~~~~t~s~~~l~~~~~lA~~~~~~~i~~Hl~E~~~e~~~~~~~---~g~---------~~~------ 251 (433)
T PRK09228 190 WHGKGRLLYAITPRFAPTSTPEQLEAAGALAREHPDVWIQTHLSENLDEIAWVKEL---FPE---------ARD------ 251 (433)
T ss_pred HhCCCCceEEEECCcCCcCCHHHHHHHHHHHHHCCCCceEEeecCChhHHHHHHHH---cCC---------CCC------
Confidence 333467788888888899999999999999998 99999996 777665444321 121 000
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHH
Q 014320 272 TTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKA 351 (427)
Q Consensus 272 ~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~ 351 (427)
..+.++.....+.++.+.|+...+. +.++.+++.|+.+.. ||...+. .+.. .+|
T Consensus 252 ~~~~l~~~G~l~~~~~~~H~~~l~~-~~~~~la~~g~~v~~--~P~sn~~-----------lg~g---~~~--------- 305 (433)
T PRK09228 252 YLDVYERYGLLGPRAVFAHCIHLED-RERRRLAETGAAIAF--CPTSNLF-----------LGSG---LFD--------- 305 (433)
T ss_pred HHHHHHHcCCCCCCeEEEeccCCCH-HHHHHHHHcCCeEEE--CCccHHh-----------hcCC---CcC---------
Confidence 0111111222345788999987764 678888999987765 7753211 0111 234
Q ss_pred HHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 352 LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 352 l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
+.++++.|+.+++|||..+.+ ..+.+ .+.++...+.+. ....++++++++++|.|||++
T Consensus 306 ~~~~~~~Gv~v~lGtD~~~~~-~~d~~--------------~~~~~~~~~~~~-~~~~~~~~~~l~~aT~~~A~~ 364 (433)
T PRK09228 306 LKRADAAGVRVGLGTDVGGGT-SFSML--------------QTMNEAYKVQQL-QGYRLSPFQAFYLATLGGARA 364 (433)
T ss_pred HHHHHHCCCeEEEecCCCCCC-CCCHH--------------HHHHHHHHHhhc-ccCCCCHHHHHHHHhHHHHHH
Confidence 456888999999999974311 11110 122333322221 245689999999999999984
|
|
| >TIGR02967 guan_deamin guanine deaminase | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-26 Score=225.88 Aligned_cols=298 Identities=19% Similarity=0.149 Sum_probs=184.2
Q ss_pred eeeeEEEeCCeEEEeeCCCCC----CCCceEEeCCCCEEeccccccccccccCcC-CC--------------------CC
Q 014320 69 QIADVYVEDGIVVAVQPNINV----GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS--------------------ET 123 (427)
Q Consensus 69 ~~~~i~i~~g~I~~vg~~~~~----~~~~~viD~~g~~v~PG~ID~H~H~~~~~~-g~--------------------~~ 123 (427)
++++|+|+||||++||+..+. +++.++||++|++|||||||+|+|+.+... +. .+
T Consensus 5 ~~~~V~V~~g~I~~Vg~~~~~~~~~~~~~~viD~~g~~v~PGlId~H~Hl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 84 (401)
T TIGR02967 5 EDGLLVVENGRIVAVGDYAELKETLPAGVEIDDYRGHLIMPGFIDTHIHYPQTEMIASYGEQLLEWLEKYTFPTEARFAD 84 (401)
T ss_pred eceEEEEECCEEEEecCcchhhhccCCCCeEEeCCCCEEecceeecccCchhhhhcccCCchHHHHHhhCcCccccccCC
Confidence 468999999999999986432 235689999999999999999999875311 10 01
Q ss_pred hhhHH----HHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceec---c--ccCCChhhHHHHHHHHHH
Q 014320 124 IDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM---A--ITKWDEVVSDEMEVMVKE 194 (427)
Q Consensus 124 ~e~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~l~~~ 194 (427)
++..+ .....++++||||++|+...........++...+.+.|..+...... + ......+..++.++++++
T Consensus 85 ~~~~~~~a~~~~~e~l~~GvTtv~d~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~ 164 (401)
T TIGR02967 85 PDHAEEVAEFFLDELLRNGTTTALVFATVHPESVDALFEAALKRGMRMIAGKVLMDRNAPDYLRDTAESSYDESKALIER 164 (401)
T ss_pred HHHHHHHHHHHHHHHHhCCCcEEEeccccCHHHHHHHHHHHHHCCCeEEEeeeeecCCCCcccccCHHHHHHHHHHHHHH
Confidence 22222 22356799999999998643322233455566666655433222111 0 011112334455555532
Q ss_pred -cCCCeEEEEEecCCCccCCHHHHHHHHHHHHHc-CCcEEEec-CChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHH
Q 014320 195 -KGINSFKFFMAYKGSFMINDELLIEGFKRCKSL-GALAMVHA-ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEA 271 (427)
Q Consensus 195 -~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~-g~~v~~H~-e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a 271 (427)
.+...+++.+.++..+.+++++++++++.|+++ |+++++|+ |+..+.....+. .|. +|..
T Consensus 165 ~~~~g~i~~~~~~~~~~~~s~e~l~~~~~~A~~~~g~~v~~H~~e~~~~~~~~~~~---~~~---------~~~~----- 227 (401)
T TIGR02967 165 WHGKGRLLYAVTPRFAPTSSPEQLAAAGELAKEYPDVYVQTHLSENKDEIAWVKEL---FPE---------AKDY----- 227 (401)
T ss_pred HhCcCCceEEEECCcCCcCcHHHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHH---cCC---------CCcH-----
Confidence 344468888888888889999999999999999 99999997 676665544321 111 1100
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHH
Q 014320 272 TTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKA 351 (427)
Q Consensus 272 ~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~ 351 (427)
.+.++.....|.++.+.|+...+. +.++.+++.|+.+.. ||...+.. +. ..+|
T Consensus 228 -~~~l~~~g~lg~~~~~~H~~~~~~-~~~~~l~~~g~~v~~--~P~~~~~~-----------~~---g~~~--------- 280 (401)
T TIGR02967 228 -LDVYDHYGLLGRRSVFAHCIHLSD-EECQRLAETGAAIAH--CPTSNLFL-----------GS---GLFN--------- 280 (401)
T ss_pred -HHHHHHCCCCCCCeEEEecccCCH-HHHHHHHHcCCeEEE--ChHHHHHh-----------cc---CCCC---------
Confidence 011111222345777889887664 668889999987765 77532110 01 1234
Q ss_pred HHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 352 LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 352 l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
+.++++.|+.+++|||..... ..+.+ .+.+....+... ....+++.++++++|.|||+.
T Consensus 281 ~~~~~~~Gv~v~lGtD~~~~~-~~~~~--------------~~~~~~~~~~~~-~~~~~~~~~~l~~aT~~~A~~ 339 (401)
T TIGR02967 281 LKKALEHGVRVGLGTDVGGGT-SFSML--------------QTLREAYKVSQL-QGARLSPFEAFYLATLGGARA 339 (401)
T ss_pred HHHHHHCCCeEEEecCCCCCC-CcCHH--------------HHHHHHHHHhhh-cCCCCCHHHHHHHHHHHHHHH
Confidence 455888999999999964321 11110 122222222121 234699999999999999974
|
This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model. |
| >PRK12393 amidohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-26 Score=226.92 Aligned_cols=313 Identities=20% Similarity=0.230 Sum_probs=192.0
Q ss_pred ccEEEECcE-EEcCCC----ceee-eEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcC-CC----
Q 014320 53 SKILIKGGT-VVNAHH----QQIA-DVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS---- 121 (427)
Q Consensus 53 ~~~~i~~~~-i~~~~~----~~~~-~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~-g~---- 121 (427)
.+++|+|++ |++.+. ..++ +|+|+||+|++||+. ...++.++||++|++|+|||||+|+|+.+.+. |.
T Consensus 2 ~~~li~~~~~v~~~~~~~~~~~~~~~v~I~~g~I~~Vg~~-~~~~~~~viD~~g~~v~PG~VnaH~Hl~~~~~rg~~~~~ 80 (457)
T PRK12393 2 PSLLIRNAAAIMTGLPGDAARLGGPDIRIRDGRIAAIGAL-TPLPGERVIDATDCVVYPGWVNTHHHLFQSLLKGVPAGI 80 (457)
T ss_pred CcEEEECCeEEEecCCCccccccCceEEEECCEEEEEecc-CCCCCCeEEeCCCCEEecCEeecccCccccccccccccc
Confidence 468999996 676443 3344 899999999999983 22345789999999999999999999987531 11
Q ss_pred ------------------CChhhHH----HHHHHHHcCCceEEecCcCC---CCC--cHHHHHHHHHHHhccccceecee
Q 014320 122 ------------------ETIDDFF----SGQAAALAGGTTMHIDFVIP---ING--SLTAGFEAYEKKAKNSCMDYGFH 174 (427)
Q Consensus 122 ------------------~~~e~~~----~~~~~~l~~GvTtv~d~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~ 174 (427)
.++++++ .+...++++||||+.|+... ... .....+++..+.+.|..+.++..
T Consensus 81 ~~~~~~wl~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~ 160 (457)
T PRK12393 81 NQSLTAWLAAVPYRFRARFDEDLFRLAARIGLVELLRSGCTTVADHHYLYHPGMPFDTGDILFDEAEALGMRFVLCRGGA 160 (457)
T ss_pred CCchHHHhhhCcchhhhhCCHHHHHHHHHHHHHHHHhCCccEeecchhhcccccccchHHHHHHHHHHcCCeEEEEcccc
Confidence 1222222 23455799999999998421 111 23456667777776654433221
Q ss_pred c-------cc-c----CCChhhHHHHHHHHHH-cCC---CeEEEEEecCCC-ccCCHHHHHHHHHHHHHcCCcEEEec-C
Q 014320 175 M-------AI-T----KWDEVVSDEMEVMVKE-KGI---NSFKFFMAYKGS-FMINDELLIEGFKRCKSLGALAMVHA-E 236 (427)
Q Consensus 175 ~-------~~-~----~~~~~~~~~~~~l~~~-~g~---~~ik~~~~~~~~-~~~~~~~l~~~~~~a~~~g~~v~~H~-e 236 (427)
. .. . ...++.++..+++.+. .+. ..+++.+.++.+ +.++++.++++++.|+++|+++++|+ |
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~a~~~g~~~~~H~~e 240 (457)
T PRK12393 161 TQTRGDHPGLPTALRPETLDQMLADVERLVSRYHDASPDSLRRVVVAPTTPTFSLPPELLREVARAARGMGLRLHSHLSE 240 (457)
T ss_pred ccccccCCCCCCcccccCHHHHHHHHHHHHHHhcCCCcCCceEEEEcCCCCCCCcCHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 1 00 0 0112233444444432 111 236667777776 78899999999999999999999997 5
Q ss_pred ChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCc
Q 014320 237 NGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVV 316 (427)
Q Consensus 237 ~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p 316 (427)
..++++...+ ..|. +| +. .+...+..+.++.+.|+...+. +.++++++.|+.++. ||
T Consensus 241 ~~~~~~~~~~---~~g~---------~~-------~~-~l~~~g~l~~~~~~~H~~~l~~-~d~~~la~~g~~v~~--~P 297 (457)
T PRK12393 241 TVDYVDFCRE---KYGM---------TP-------VQ-FVAEHDWLGPDVWFAHLVKLDA-EEIALLAQTGTGIAH--CP 297 (457)
T ss_pred CHHHHHHHHH---HhCC---------CH-------HH-HHHHcCCCCCCeEEEEEecCCH-HHHHHHHHcCCeEEE--Cc
Confidence 5555444322 1221 11 00 1111122345677888877664 678888999987775 77
Q ss_pred cceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHh
Q 014320 317 SGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEER 396 (427)
Q Consensus 317 ~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~ 396 (427)
.... ..|. ..+| ++++++.|+.+++|||+.+.+...+.+ .+..
T Consensus 298 ~sn~-----------~lg~---g~~~---------~~~~~~~Gv~v~lGtD~~~~~~~~d~~--------------~~~~ 340 (457)
T PRK12393 298 QSNG-----------RLGS---GIAP---------ALAMEAAGVPVSLGVDGAASNESADML--------------SEAH 340 (457)
T ss_pred hhhh-----------hhcc---cCCC---------HHHHHHCCCeEEEecCCcccCCCccHH--------------HHHH
Confidence 4211 1111 1244 456999999999999975432211110 1222
Q ss_pred HHHHHHHHH-hcCCCCHHHHHHHHchhhhcC
Q 014320 397 MHLVWDTMV-ESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 397 l~~~~~~~~-~~~~l~l~~~v~~~t~npA~~ 426 (427)
+..+..... ....+++.++++++|.|||++
T Consensus 341 ~a~~~~~~~~~~~~~~~~~~l~~~T~~~A~~ 371 (457)
T PRK12393 341 AAWLLHRAEGGADATTVEDVVHWGTAGGARV 371 (457)
T ss_pred HHHHHhhhcCCCCCCCHHHHHHHHhHHHHHH
Confidence 222221110 113599999999999999974
|
|
| >TIGR03314 Se_ssnA putative selenium metabolism protein SsnA | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.2e-26 Score=225.05 Aligned_cols=298 Identities=20% Similarity=0.236 Sum_probs=193.7
Q ss_pred EEECcEEEcCCC----ceeeeEEEeCCeEEEeeCCCCC---CCCceEEeCCCCEEeccccccccccccCcC-CC------
Q 014320 56 LIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS------ 121 (427)
Q Consensus 56 ~i~~~~i~~~~~----~~~~~i~i~~g~I~~vg~~~~~---~~~~~viD~~g~~v~PG~ID~H~H~~~~~~-g~------ 121 (427)
+|+|++|++.+. ..+++|+|+||+|++||+..+. .++.++||++|++|+|||||+|+|+.+... |.
T Consensus 2 li~~~~i~t~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~~~~~~~~id~~g~~v~PG~vd~H~H~~~~~~rg~~~d~~~ 81 (441)
T TIGR03314 2 LIGNGTAVQLDPTRPIQEGGDIAIDGDVIKAVGPTEELKQKYPEATFIDAKGKLIMPGFINTHNHFYSTFARGMMADIPP 81 (441)
T ss_pred EEECCEEEecCCCCceEeccEEEEECCEEEEEcCchhhcccCCCCeEEeCCCCEEecCeeecccchhhhhhccccccCCC
Confidence 689999997543 3568999999999999975322 134578999999999999999999976421 10
Q ss_pred ------------------CChhhHHHH----HHHHHcCCceEEecCcCCCC---CcHHHHHHHHHHHhccccceeceecc
Q 014320 122 ------------------ETIDDFFSG----QAAALAGGTTMHIDFVIPIN---GSLTAGFEAYEKKAKNSCMDYGFHMA 176 (427)
Q Consensus 122 ------------------~~~e~~~~~----~~~~l~~GvTtv~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (427)
.++++.+.+ ...++++||||++|+..... ......+++..+.+.|..+.+.+...
T Consensus 82 ~~~~~~~l~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~~~ 161 (441)
T TIGR03314 82 PPDFISILKNLWWRLDRALTLEDVYYSGLICSLDAIKSGCTTVIDHHASPNAITGSLSTIRKAADEAGLRTMLCYETSDR 161 (441)
T ss_pred CCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHHHcCCeEEEecccccccccchHHHHHHHHHHhCCeEEEeeeeecC
Confidence 122333222 23468999999999853321 12345567777777776665544321
Q ss_pred cc-CCChhhHHHHHHHHH-HcC--CCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-CChhhHHHHHH-----
Q 014320 177 IT-KWDEVVSDEMEVMVK-EKG--INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQK----- 246 (427)
Q Consensus 177 ~~-~~~~~~~~~~~~l~~-~~g--~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~----- 246 (427)
.. ....+.+++..++++ +.+ ...++..+++++++.++++.++++.+.|+++|+++++|+ |+..++..+.+
T Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~p~~~~t~s~~~l~~~~~lA~~~~~~i~~H~~E~~~e~~~~~~~~g~~ 241 (441)
T TIGR03314 162 DGGKEMQEGVEENIAFIKKSSGKEPYLVEAHIGAHAPFTVSDAGLEMCREAVQATGRGFHIHVAEDIYDVEDSHHKYGKD 241 (441)
T ss_pred CCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHcCCC
Confidence 11 111222333333432 232 235788889999999999999999999999999999996 77766655432
Q ss_pred ---HHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCc
Q 014320 247 ---RMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDD 323 (427)
Q Consensus 247 ---~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~ 323 (427)
++.+.|+ .+.++.+.|+...+. +.++.+++.|+.|+. ||...+
T Consensus 242 ~~~~l~~~G~----------------------------l~~~~~~~H~~~~~~-~d~~~la~~g~~v~~--cP~sn~--- 287 (441)
T TIGR03314 242 IVERLADFGL----------------------------LGSKTLAAHCIYLSD-REIELLNETDTFVVH--NPESNM--- 287 (441)
T ss_pred HHHHHHHCCC----------------------------CCCCeEEEEEecCCH-HHHHHHHHcCCcEEE--CHHHHh---
Confidence 2333333 344666777776654 668888899988876 775221
Q ss_pred ccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHH
Q 014320 324 SWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDT 403 (427)
Q Consensus 324 ~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~ 403 (427)
..+.. .+|+ .++++.|+.++||||+.+.+.- .+.++..++.+
T Consensus 288 --------~l~~G---~~p~---------~~~~~~Gv~v~LGtD~~~~d~~------------------~em~~a~~~~~ 329 (441)
T TIGR03314 288 --------GNAVG---YNPV---------LRMFKNGILLGLGTDGYTSDMF------------------ESLKFANFKHK 329 (441)
T ss_pred --------hhccC---CCCH---------HHHHHCCCEEEEcCCCCCcCHH------------------HHHHHHHHHhc
Confidence 11111 2554 5589999999999997543211 23444444432
Q ss_pred HHh-cCCCCHHHHHHHHchhhhc
Q 014320 404 MVE-SGQISVTDYVRLTSTEWGR 425 (427)
Q Consensus 404 ~~~-~~~l~l~~~v~~~t~npA~ 425 (427)
... .....+.++++++|.|+|+
T Consensus 330 ~~~~~~~~~~~~~~~~aT~~ga~ 352 (441)
T TIGR03314 330 DAGGDLNAAWPESPAMLFENNNE 352 (441)
T ss_pred cccCCCCccHHHHHHHHHHHHHH
Confidence 211 1123467899999999987
|
Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown. |
| >PRK06038 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=222.98 Aligned_cols=309 Identities=21% Similarity=0.300 Sum_probs=191.1
Q ss_pred ccEEEECcEEEcCCC--ceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcC-C---------
Q 014320 53 SKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G--------- 120 (427)
Q Consensus 53 ~~~~i~~~~i~~~~~--~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~-g--------- 120 (427)
.+++|+|++|++++. ..+++|+|+||+|++|++.... +..++||+.|++|+|||||+|+|+.+... +
T Consensus 2 ~~~~~~~~~i~~~~~~~~~~~~v~v~~g~I~~i~~~~~~-~~~~~id~~g~~v~PG~vd~H~H~~~~~~~g~~~~~~~~~ 80 (430)
T PRK06038 2 ADIIIKNAYVLTMDAGDLKKGSVVIEDGTITEVSESTPG-DADTVIDAKGSVVMPGLVNTHTHAAMTLFRGYADDLPLAE 80 (430)
T ss_pred CCEEEEccEEEECCCCeeeccEEEEECCEEEEecCCCCC-CCCEEEeCCCCEEecCeeecccCcchhhhhhccCCCCHHH
Confidence 357999999997653 4568999999999999986432 34579999999999999999999976421 1
Q ss_pred -----------CCChhhHHH----HHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceec-cccCCChhh
Q 014320 121 -----------SETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM-AITKWDEVV 184 (427)
Q Consensus 121 -----------~~~~e~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 184 (427)
..++++.+. +...++++||||+.|+... .....++..+.+.+....++... ......++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~D~~~~----~~~~~~a~~~~GiR~~~~~~~~d~~~~~~~~~~ 156 (430)
T PRK06038 81 WLNDHIWPAEAKLTAEDVYAGSLLACLEMIKSGTTSFADMYFY----MDEVAKAVEESGLRAALSYGMIDLGDDEKGEAE 156 (430)
T ss_pred HHHhhhhhchhcCCHHHHHHHHHHHHHHHHhcCceeEEccccC----HHHHHHHHHHhCCeEEEEchhccCCCccchHHH
Confidence 112233222 2445699999999997531 22344555555555433322110 001111223
Q ss_pred HHHHHHHHHH-cC--CCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-CChhhHHHHHHHHHHcCCCCccccc
Q 014320 185 SDEMEVMVKE-KG--INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITGPEGHA 260 (427)
Q Consensus 185 ~~~~~~l~~~-~g--~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~~l~~~G~~~~~~~~ 260 (427)
+++..++++. .+ ...++..++++.+..+++++++++++.|+++|+++++|+ ++........+ ..|..
T Consensus 157 l~~~~~~i~~~~~~~~g~v~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~---~~G~~------ 227 (430)
T PRK06038 157 LKEGKRFVKEWHGAADGRIKVMYGPHAPYTCSEEFLSKVKKLANKDGVGIHIHVLETEAELNQMKE---QYGMC------ 227 (430)
T ss_pred HHHHHHHHHHhcCCCCCceEEEEeCCcCccCCHHHHHHHHHHHHHcCCcEEEEcCCCHHHHHHHHH---HhCCC------
Confidence 3444444432 22 235777778888888999999999999999999999998 55443322211 11221
Q ss_pred ccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEc
Q 014320 261 LSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMS 340 (427)
Q Consensus 261 ~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~ 340 (427)
.+ +.++.....+.++.+.|+...+. +.++++++.|+.+++ ||...+.. +. ..
T Consensus 228 ----------~i-~~l~~~g~l~~r~~~~H~~~l~~-~~~~~la~~g~~v~~--~P~~n~~~-----------~~---~~ 279 (430)
T PRK06038 228 ----------SV-NYLDDIGFLGPDVLAAHCVWLSD-GDIEILRERGVNVSH--NPVSNMKL-----------AS---GI 279 (430)
T ss_pred ----------HH-HHHHHcCCCCCCeEEEEEecCCH-HHHHHHHhcCCEEEE--ChHHhhhh-----------cc---CC
Confidence 00 01111222345677888877664 568888999987775 67532210 01 12
Q ss_pred CCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHH--hcCCCCHHHHHHH
Q 014320 341 PPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV--ESGQISVTDYVRL 418 (427)
Q Consensus 341 pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~--~~~~l~l~~~v~~ 418 (427)
+| +.++++.|+.+++|||+.+.....+.+ .+.++..++.... ....+++.+++++
T Consensus 280 ~p---------~~~~~~~Gv~v~lGtD~~~~~~~~d~~--------------~~~~~a~~~~~~~~~~~~~~~~~~al~~ 336 (430)
T PRK06038 280 AP---------VPKLLERGVNVSLGTDGCASNNNLDMF--------------EEMKTAALLHKVNTMDPTALPARQVLEM 336 (430)
T ss_pred CC---------HHHHHHCCCeEEEeCCCCccCCCcCHH--------------HHHHHHHHHhhhccCCCCcCCHHHHHHH
Confidence 44 456999999999999964322211110 1222322222211 1246899999999
Q ss_pred HchhhhcC
Q 014320 419 TSTEWGRL 426 (427)
Q Consensus 419 ~t~npA~~ 426 (427)
+|.|||+.
T Consensus 337 aT~~gA~~ 344 (430)
T PRK06038 337 ATVNGAKA 344 (430)
T ss_pred HhHHHHHH
Confidence 99999974
|
|
| >PRK08204 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.6e-26 Score=226.43 Aligned_cols=304 Identities=20% Similarity=0.253 Sum_probs=187.3
Q ss_pred ccEEEECcEEEcCCC----ceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCC--------
Q 014320 53 SKILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG-------- 120 (427)
Q Consensus 53 ~~~~i~~~~i~~~~~----~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g-------- 120 (427)
.+++|+|++|++.++ ..+++|+|+||+|++||+..+.+ +.++||++|++|+|||||+|+|+.+....
T Consensus 2 ~~~li~~~~v~~~~~~~~~~~~~~v~V~~g~I~~Vg~~~~~~-~~~viD~~g~~v~PGlId~H~H~~~~~~~~~~~~~~~ 80 (449)
T PRK08204 2 KRTLIRGGTVLTMDPAIGDLPRGDILIEGDRIAAVAPSIEAP-DAEVVDARGMIVMPGLVDTHRHTWQSVLRGIGADWTL 80 (449)
T ss_pred CcEEEECcEEEecCCCCCccccceEEEECCEEEEecCCCCCC-CCeEEeCCCCEEecCEEeeeeccchhhhccccCCCcH
Confidence 357899999997553 35789999999999999864433 56899999999999999999998643110
Q ss_pred -------------CCChhhHH----HHHHHHHcCCceEEecCcCCCCC--cHHHHHHHHHHHhccccceeceecccc---
Q 014320 121 -------------SETIDDFF----SGQAAALAGGTTMHIDFVIPING--SLTAGFEAYEKKAKNSCMDYGFHMAIT--- 178 (427)
Q Consensus 121 -------------~~~~e~~~----~~~~~~l~~GvTtv~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 178 (427)
..++++.+ .....++++||||++|+...... .....++...+.+.+..+..+......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~L~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~G~r~~~~~~~~~~~~~~~ 160 (449)
T PRK08204 81 QTYFREIHGNLGPMFRPEDVYIANLLGALEALDAGVTTLLDWSHINNSPEHADAAIRGLAEAGIRAVFAHGSPGPSPYWP 160 (449)
T ss_pred HHHHHhhcccccccCCHHHHHHHHHHHHHHHHhcCCeEEeecccccCChhHHHHHHHHHHHcCCeEEEEccccCCCCCCC
Confidence 01122222 23456799999999997643321 334455666666655433222111100
Q ss_pred -CCChhhHHHHHHHHH--HcCCC-eEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-CChhh-HHHHHHHHHHcC
Q 014320 179 -KWDEVVSDEMEVMVK--EKGIN-SFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDA-VFEGQKRMIELG 252 (427)
Q Consensus 179 -~~~~~~~~~~~~l~~--~~g~~-~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e~~~~-~~~~~~~l~~~G 252 (427)
....+..++++.+.+ ..+++ .+...+..+++..++++.++++++.|+++|+++++|+ |+... .....+.+.+.|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~l~~~g 240 (449)
T PRK08204 161 FDSVPHPREDIRRVKKRYFSSDDGLLTLGLAIRGPEFSSWEVARADFRLARELGLPISMHQGFGPWGATPRGVEQLHDAG 240 (449)
T ss_pred cchhhhhHHHHHHHHHhhccCCCCceEEEEecCCcccCCHHHHHHHHHHHHHcCCcEEEEEcCCCcccCCCHHHHHHHCC
Confidence 011122333333332 12333 3445556666777889999999999999999999997 44321 111112222222
Q ss_pred CCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcc
Q 014320 253 ITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFV 332 (427)
Q Consensus 253 ~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~ 332 (427)
+ .+.++.++|+...+. +.++++++.|+.++. ||.+... +
T Consensus 241 ~----------------------------~~~~~~i~H~~~~~~-~~~~~la~~g~~v~~--~P~~~~~----~------ 279 (449)
T PRK08204 241 L----------------------------LGPDLNLVHGNDLSD-DELKLLADSGGSFSV--TPEIEMM----M------ 279 (449)
T ss_pred C----------------------------CCCCeEEEecCCCCH-HHHHHHHHcCCCEEE--ChHHHhh----h------
Confidence 2 345677999988765 678899999988876 7753211 0
Q ss_pred cCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHH--------
Q 014320 333 TAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTM-------- 404 (427)
Q Consensus 333 ~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~-------- 404 (427)
|.. .+| +.++++.|+.+++|||+.+.... +. | .+.++.......
T Consensus 280 -g~~---~~~---------~~~~~~~Gv~v~lGtD~~~~~~~-~~-----~---------~~~~~a~~~~~~~~~~~~~~ 331 (449)
T PRK08204 280 -GHG---YPV---------TGRLLAHGVRPSLGVDVVTSTGG-DM-----F---------TQMRFALQAERARDNAVHLR 331 (449)
T ss_pred -cCC---CCc---------HHHHHhcCCceeeccccCCCCCc-CH-----H---------HHHHHHHHHHHhhccccccc
Confidence 011 244 45588999999999997543221 10 0 122222221111
Q ss_pred -----HhcCCCCHHHHHHHHchhhhcC
Q 014320 405 -----VESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 405 -----~~~~~l~l~~~v~~~t~npA~~ 426 (427)
..+..+++.++++++|.|+|+.
T Consensus 332 ~~~~~~~~~~~~~~~al~~~T~~gA~~ 358 (449)
T PRK08204 332 EGGMPPPRLTLTARQVLEWATIEGARA 358 (449)
T ss_pred ccccCCCcCCCCHHHHHHHHhHHHHHH
Confidence 0135699999999999999974
|
|
| >cd01303 GDEase Guanine deaminase (GDEase) | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=221.96 Aligned_cols=299 Identities=17% Similarity=0.100 Sum_probs=184.4
Q ss_pred eeeeEEEeCCeEEEeeCCCCC----CCCceEEeCCCCEEeccccccccccccCcC-CC---------------------C
Q 014320 69 QIADVYVEDGIVVAVQPNINV----GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS---------------------E 122 (427)
Q Consensus 69 ~~~~i~i~~g~I~~vg~~~~~----~~~~~viD~~g~~v~PG~ID~H~H~~~~~~-g~---------------------~ 122 (427)
++++|+|+||+|++||+..+. +++.++||++|++|||||||+|+|+.+... |. .
T Consensus 25 ~~g~V~v~~g~I~~vG~~~~~~~~~~~~~~viD~~g~~v~PGlVn~H~Hl~~~~~rg~~~~~~l~~wl~~~~~~~e~~~~ 104 (429)
T cd01303 25 EDGLIVVVDGNIIAAGAAETLKRAAKPGARVIDSPNQFILPGFIDTHIHAPQYANIGSGLGEPLLDWLETYTFPEEAKFA 104 (429)
T ss_pred CCeEEEEECCEEEEeCchhhhhhhcCCCceEEcCCCCEEecceeeeeecccccccccccCCCcHHHHHHhhhhHHHHhcC
Confidence 578999999999999985432 345689999999999999999999976421 11 0
Q ss_pred ChhhH----HHHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceeccc-c----CCChhhHHHHHHHHH
Q 014320 123 TIDDF----FSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAI-T----KWDEVVSDEMEVMVK 193 (427)
Q Consensus 123 ~~e~~----~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~l~~ 193 (427)
+.+.. ......++++||||++|+...........+++..+.+.|..+.+...... . ....+.+++..++++
T Consensus 105 ~~~~~~~~a~~~~~e~l~~GvTtv~d~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 184 (429)
T cd01303 105 DPAYAREVYGRFLDELLRNGTTTACYFATIHPESTEALFEEAAKRGQRAIAGKVCMDRNAPEYYRDTAESSYRDTKRLIE 184 (429)
T ss_pred CHHHHHHHHHHHHHHHHhCCceEEEeecccChhHHHHHHHHHHHhCCeEEEeeeeecCCCCcccccCHHHHHHHHHHHHH
Confidence 11111 12234569999999999864322234455666777776655443322110 0 111122333344433
Q ss_pred H-cCC-CeEEEEEecCCCccCCHHHHHHHHHHHHHcC-CcEEEec-CChhhHHHHHHHHHHcCCCCcccccccCCHHHHH
Q 014320 194 E-KGI-NSFKFFMAYKGSFMINDELLIEGFKRCKSLG-ALAMVHA-ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEG 269 (427)
Q Consensus 194 ~-~g~-~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g-~~v~~H~-e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~ 269 (427)
. .+. ..+...+.++..+.++++.++++++.|+++| +++++|+ |+..++..+.+. .|-. .+|
T Consensus 185 ~~~~~~~~v~~~~~p~~~~~~s~e~l~~~~~~A~~~g~~~v~~H~~e~~~e~~~~~~~---~g~~-------~~p----- 249 (429)
T cd01303 185 RWHGKSGRVKPAITPRFAPSCSEELLAALGKLAKEHPDLHIQTHISENLDEIAWVKEL---FPGA-------RDY----- 249 (429)
T ss_pred HHhCcCCceEEEEecCcCCcCCHHHHHHHHHHHHHCCCCeEEEeeCCCHHHHHHHHHH---cCCC-------CCH-----
Confidence 2 222 4577778888888999999999999999999 9999997 666555433321 1100 000
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccH
Q 014320 270 EATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHN 349 (427)
Q Consensus 270 ~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~ 349 (427)
.+.++.....+.++.+.|+...+. +.++++++.|+.|+. ||...+.. +. ..+|
T Consensus 250 ---~~~l~~~G~l~~~~~l~H~~~l~~-~~~~~l~~~g~~v~~--~P~sn~~l-----------~~---g~~~------- 302 (429)
T cd01303 250 ---LDVYDKYGLLTEKTVLAHCVHLSE-EEFNLLKERGASVAH--CPTSNLFL-----------GS---GLFD------- 302 (429)
T ss_pred ---HHHHHHCCCCCCCcEEEeCCCCCH-HHHHHHHHcCCEEEE--Cccchhhh-----------cc---CCCC-------
Confidence 011111122345778999987764 678889999987775 77532110 11 1234
Q ss_pred HHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHH-----hcCCCCHHHHHHHHchhhh
Q 014320 350 KALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV-----ESGQISVTDYVRLTSTEWG 424 (427)
Q Consensus 350 ~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~-----~~~~l~l~~~v~~~t~npA 424 (427)
+.++++.|+.+++|||+.+.+. .+.+ .+.++...+.+.. ....+++.++++++|.|||
T Consensus 303 --~~~~~~~Gv~v~lGtD~~~~~~-~d~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~aT~~gA 365 (429)
T cd01303 303 --VRKLLDAGIKVGLGTDVGGGTS-FSML--------------DTLRQAYKVSRLLGYELGGHAKLSPAEAFYLATLGGA 365 (429)
T ss_pred --HHHHHHCCCeEEEeccCCCCCC-ccHH--------------HHHHHHHHHHHhhccccCCcCCCCHHHHHHHHhhHHH
Confidence 4569999999999999753221 1110 1222222222211 1235899999999999999
Q ss_pred cC
Q 014320 425 RL 426 (427)
Q Consensus 425 ~~ 426 (427)
|.
T Consensus 366 ~~ 367 (429)
T cd01303 366 EA 367 (429)
T ss_pred HH
Confidence 84
|
Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool. |
| >PRK10657 isoaspartyl dipeptidase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-25 Score=217.94 Aligned_cols=313 Identities=18% Similarity=0.184 Sum_probs=184.4
Q ss_pred cEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCC---CCceEEeCCCCEEeccccccccccccCcCC-CCChhhHHH
Q 014320 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVG---DDVKVLDATGKFVMPGGIDPHTHLAMEFMG-SETIDDFFS 129 (427)
Q Consensus 54 ~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~---~~~~viD~~g~~v~PG~ID~H~H~~~~~~g-~~~~e~~~~ 129 (427)
+++|+|++|++++....++|+|+||+|++|++..+.+ .+.++||++|++|+|||||+|+|+...... .....+...
T Consensus 2 ~~~i~~~~v~~~~~~~~~~i~i~~g~I~~v~~~~~~~~~~~~~~~id~~g~~v~PG~id~H~H~~~~~~~~~~~~~t~~~ 81 (388)
T PRK10657 2 FTLLKNAHVYAPEDLGKKDILIAGGKIIAIADNINIPDIVPDIEVIDASGKILVPGFIDQHVHIIGGGGEGGFSTRTPEV 81 (388)
T ss_pred eEEEEccEEECCCCCcceEEEEECCEEEEecCCccccccCCCCeEEECCCCEEcccceeeeeCcccCCCCcccccCCHHH
Confidence 3789999999987666789999999999998753321 246899999999999999999998742100 011123345
Q ss_pred HHHHHHcCCceEEecCcCCCCC-cH----HHHHHHHHHHhccccceeceec-cccCCChhhHHHHHHHHHHcCCCeE-EE
Q 014320 130 GQAAALAGGTTMHIDFVIPING-SL----TAGFEAYEKKAKNSCMDYGFHM-AITKWDEVVSDEMEVMVKEKGINSF-KF 202 (427)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~g~~~i-k~ 202 (427)
.+++++++||||++|+...... .. .+..+...+.+.+.....+++. ......+...+++ .+. ..+.++ ++
T Consensus 82 ~~~~~~~~GvTTvvd~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~g~g~~ 158 (388)
T PRK10657 82 QLSDLTEAGITTVVGLLGTDGITRSMESLLAKARALEEEGISAYMYTGSYHVPVRTITGSIRKDI-VLI--DKVIGVGEI 158 (388)
T ss_pred HHHHHHhCCceEEECCCCCCCCCCCHHHHHHHHHHHHhhCCEEEEEecCCCCCchhhhcchhhce-ehh--hhhhCccee
Confidence 6788899999999998733221 11 2222222233333321111110 0000011111111 111 111223 55
Q ss_pred EEecCCCccCCHHHHHHHHHHHHHcCC------cEEEec-CChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHH
Q 014320 203 FMAYKGSFMINDELLIEGFKRCKSLGA------LAMVHA-ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRA 275 (427)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~a~~~g~------~v~~H~-e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~ 275 (427)
...++.....+++++.++.+.++..+. ++++|+ +.....+...+++++.|+...
T Consensus 159 ~~~~~~~~~~~~~~l~~~~~~a~~~~~~~g~~~~i~vH~~~~~~~l~~v~~~l~~~Gv~~~------------------- 219 (388)
T PRK10657 159 AISDHRSSQPTVEELARLAAEARVGGLLSGKAGIVHVHMGDGKKGLQPLFELLENTDIPIS------------------- 219 (388)
T ss_pred eeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCchHHHHHHHHHHHhcCCCcc-------------------
Confidence 555565566788899888888775544 789996 344444333334445554321
Q ss_pred HHHHHhcCCCEEEEcCCC-HHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCc---ccHHH
Q 014320 276 IRLAEFVNTPLYVVHVMS-MDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRAS---GHNKA 351 (427)
Q Consensus 276 ~~~~~~~g~~~~i~H~~~-~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~---~~~~~ 351 (427)
++...|+.. .+..+...++.++|..+.... +.||++.+ .+.+.
T Consensus 220 ---------~~~~~H~~~~~~~~~~~~~~~~~G~~~~v~~------------------------~~~~~~~~~~~~~~~~ 266 (388)
T PRK10657 220 ---------QFLPTHVNRNEPLFEQALEFAKKGGVIDLTT------------------------SDPDFLGEGEVAPAEA 266 (388)
T ss_pred ---------eeeCcccCCCHHHHHHHHHHHHcCCeEEEec------------------------CCCcccccCccCHHHH
Confidence 234556543 121233444444565443321 12333333 23478
Q ss_pred HHHHHhcCC---ceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 352 LQAALATGI---LQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 352 l~~~l~~G~---~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
+|+++++|. .+.++||+.+..+.... ++. ..+.|..+.++.+..+. ..+...+++++++++++|.||||+
T Consensus 267 l~~~~~~G~~~d~v~l~tD~~~~~~~~~~--~g~--~~~~g~~~~~~l~~~~~-~~~~~~gis~~~~l~~aT~npA~~ 339 (388)
T PRK10657 267 LKRALEAGVPLSRVTLSSDGNGSLPKFDE--DGN--LVGLGVGSVESLLEEVR-ELVKDEGLPLEDALKPLTSNVARF 339 (388)
T ss_pred HHHHHHcCCChhheEEECCCCCCCceecc--CCC--EeccCcCchhhHHHHHH-HHHHhcCCCHHHHHHHHHHHHHHH
Confidence 999999998 56999998544321110 011 14678888887777766 556567899999999999999985
|
|
| >PRK06151 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-25 Score=224.71 Aligned_cols=309 Identities=17% Similarity=0.141 Sum_probs=188.3
Q ss_pred cEEEECcEEEcCCC-----ceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccC-----c-----
Q 014320 54 KILIKGGTVVNAHH-----QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAME-----F----- 118 (427)
Q Consensus 54 ~~~i~~~~i~~~~~-----~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~-----~----- 118 (427)
.++|+|+.|++.++ .++++|+|+||+|++||+.... .+.++||++|++|||||||+|+|+... .
T Consensus 2 ~~li~~~~v~~~d~~~~~~~~~~~VlVe~g~I~~Vg~~~~~-~~~~viD~~g~~vlPGlVdaH~Hl~~~~~~~~~~~~~~ 80 (488)
T PRK06151 2 RTLIKARWVLGFDDGDHRLLRDGEVVFEGDRILFVGHRFDG-EVDRVIDAGNALVGPGFIDLDALSDLDTTILGLDNGPG 80 (488)
T ss_pred eEEEEccEEEEEcCCCCeEEeCcEEEEECCEEEEecCCCCC-CCCeEEeCCCCEEecCEEeeecccchhhhhcccccchh
Confidence 36899999976442 3578999999999999985432 245799999999999999999997421 0
Q ss_pred --CC--------------CCChhhHH----HHHHHHHcCCceEEecCcCCCC---C----cHHHHHHHHHHHhcccccee
Q 014320 119 --MG--------------SETIDDFF----SGQAAALAGGTTMHIDFVIPIN---G----SLTAGFEAYEKKAKNSCMDY 171 (427)
Q Consensus 119 --~g--------------~~~~e~~~----~~~~~~l~~GvTtv~d~~~~~~---~----~~~~~~~~~~~~~~~~~~~~ 171 (427)
.+ ..++++.+ .+...++++||||++|+..... . ...+.++...+.+.+..+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~t~e~~~~~a~~~~~e~L~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~a~~~~GiR~~~~~ 160 (488)
T PRK06151 81 WAKGRVWSRDYVEAGRREMYTPEELAFQKRYAFAQLLRNGITTAMPIASLFYRQWAETYAEFAAAAEAAGRLGLRVYLGP 160 (488)
T ss_pred HHhcccCchhhhhcchhhcCCHHHHHHHHHHHHHHHHhcCeeEEehhhhhhccccccccchHHHHHHHHHHcCCeEEecc
Confidence 00 12233333 2345679999999998743111 1 13444555566665532221
Q ss_pred ceecc------------cc--CCChhhHHHHHHHHH---HcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEe
Q 014320 172 GFHMA------------IT--KWDEVVSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVH 234 (427)
Q Consensus 172 ~~~~~------------~~--~~~~~~~~~~~~l~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H 234 (427)
.+... .. ....+.+.+..++++ ..|.+.+|..+.++..+.+++++++++++.|+++|+++++|
T Consensus 161 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~i~~~~~p~~~~~~s~e~l~~~~~~A~~~g~~v~~H 240 (488)
T PRK06151 161 AYRSGGSVLEADGSLEVVFDEARGLAGLEEAIAFIKRVDGAHNGLVRGMLAPDRIETCTVDLLRRTAAAARELGCPVRLH 240 (488)
T ss_pred hhccCccccccCCCCCccccchhHHHHHHHHHHHHHHhhcccCCceEEEEcCCCCCCCCHHHHHHHHHHHHHCCCcEEEE
Confidence 11100 00 001122333444332 24667799988888888899999999999999999999999
Q ss_pred c-CChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHH--------HHHHHHHhh
Q 014320 235 A-ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDA--------MEEIAKARK 305 (427)
Q Consensus 235 ~-e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~--------~~~i~~~~~ 305 (427)
+ ++..++....+ ..|.. .+ +.+......+.++.+.|+...+. .+.++++++
T Consensus 241 ~~e~~~~~~~~~~---~~g~~----------------~~-~~~~~~g~l~~r~~l~H~~~l~~~~~~~~~~~~~~~~la~ 300 (488)
T PRK06151 241 CAQGVLEVETVRR---LHGTT----------------PL-EWLADVGLLGPRLLIPHATYISGSPRLNYSGGDDLALLAE 300 (488)
T ss_pred ECCchHHHHHHHH---HcCCC----------------HH-HHHHHcCCCCCCcEEEEEEEcCCccccccCCHHHHHHHHh
Confidence 8 66655433322 12211 00 01111122345667777765442 167888889
Q ss_pred cCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCcc
Q 014320 306 AGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRK 385 (427)
Q Consensus 306 ~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~ 385 (427)
.|+.+++ ||.... ..|. ..+| +.++++.|+.+++|||..|.+.-.
T Consensus 301 ~g~~v~~--~P~~~~-----------~~g~---~~~p---------~~~l~~~Gv~v~lGtD~~~~~~~~---------- 345 (488)
T PRK06151 301 HGVSIVH--CPLVSA-----------RHGS---ALNS---------FDRYREAGINLALGTDTFPPDMVM---------- 345 (488)
T ss_pred cCCEEEE--Cchhhh-----------hhcc---cccc---------HHHHHHCCCcEEEECCCCCccHHH----------
Confidence 9987765 664211 0011 1233 456889999999999974422111
Q ss_pred CCCCCchhhHhHHHHHHHHHh--cCCCCHHHHHHHHchhhhcC
Q 014320 386 IPNGVNGIEERMHLVWDTMVE--SGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 386 ~~~G~~~~e~~l~~~~~~~~~--~~~l~l~~~v~~~t~npA~~ 426 (427)
+......+..... ...+++.++++++|.|||++
T Consensus 346 --------~~~~~~~~~~~~~~~~~~~~~~~al~~aT~~~A~~ 380 (488)
T PRK06151 346 --------NMRVGLILGRVVEGDLDAASAADLFDAATLGGARA 380 (488)
T ss_pred --------HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 1122222222222 23489999999999999974
|
|
| >PRK08393 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-25 Score=217.84 Aligned_cols=308 Identities=22% Similarity=0.283 Sum_probs=191.7
Q ss_pred cEEEECcEEEcCCC--ceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcC-C----------
Q 014320 54 KILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G---------- 120 (427)
Q Consensus 54 ~~~i~~~~i~~~~~--~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~-g---------- 120 (427)
+++|+|++|++++. ..+++|+|+||+|++|++.... ++.++||+.|++|+|||||+|+|+.+... +
T Consensus 2 ~~~i~~~~i~~~~~~~~~~~~i~i~~g~I~~v~~~~~~-~~~~~id~~~~~v~Pg~vd~H~H~~~~~~rg~~~~~~l~~~ 80 (424)
T PRK08393 2 SILIKNGYVIYGENLKVIRADVLIEGNKIVEVKRNINK-PADTVIDASGSVVSPGFINAHTHSPMVLLRGLADDVPLMEW 80 (424)
T ss_pred eEEEECcEEEeCCCCceecceEEEECCEEEEecCCCCC-CCCeEEeCCCCEEccCeeeeccCcchHhhhhccCCCCHHHH
Confidence 47999999999876 3468899999999999975433 34579999999999999999999876311 0
Q ss_pred ----------CCChhhHHH----HHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceecc-ccCCChhhH
Q 014320 121 ----------SETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMA-ITKWDEVVS 185 (427)
Q Consensus 121 ----------~~~~e~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 185 (427)
..++++++. +...++++||||+.|+.. ...+.++...+.+.+..+.++.... ......+.+
T Consensus 81 l~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~GvTtv~d~~~----~~~~~~~a~~~~G~r~~~~~~~~~~~~~~~~~~~l 156 (424)
T PRK08393 81 LQNYIWPRERKLKRKDIYWGAYLGLLEMIKSGTTTFVDMYF----HMEEVAKATLEVGLRGYLSYGMVDLGDEEKREKEI 156 (424)
T ss_pred HHhhhccccccCCHHHHHHHHHHHHHHHHhcCceEEecccc----CHHHHHHHHHHhCCeEEEeceEecCCCccchHHHH
Confidence 012333332 345568999999999853 2345556666666665544432211 011112223
Q ss_pred HHHHHHHH---HcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-CChhhHHHHHHHHHHcCCCCcccccc
Q 014320 186 DEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITGPEGHAL 261 (427)
Q Consensus 186 ~~~~~l~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~~l~~~G~~~~~~~~~ 261 (427)
++..+..+ ..+...+...+.++.++.++++.++++++.|+++|+++++|+ |+..++....+. .|..
T Consensus 157 ~~~~~~~~~~~~~~~~~v~~~~~p~~~~~~s~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~---~g~~------- 226 (424)
T PRK08393 157 KETEKLMEFIEKLNSPRVHFVFGPHAPYTCSLALLKWVREKAREWNKLITIHLSETMDEIKQIREK---YGKS------- 226 (424)
T ss_pred HHHHHHHHHHhcCCCCceEEEEeCCcCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHH---hCcC-------
Confidence 33333332 123334666677888888999999999999999999999997 666655443321 1210
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcC
Q 014320 262 SRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSP 341 (427)
Q Consensus 262 ~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~p 341 (427)
| + +.++.....+.++.+.|+..... +.++++++.|+.+.+ ||..... .+.. .+
T Consensus 227 --~-------~-~~l~~~G~l~~~~~~~H~~~l~~-~~l~~la~~g~~v~~--~P~sn~~-----------lg~g---~~ 279 (424)
T PRK08393 227 --P-------V-VLLDEIGFLNEDVIAAHGVWLSS-RDIRILASAGVTVAH--NPASNMK-----------LGSG---VM 279 (424)
T ss_pred --H-------H-HHHHHcCCCCCCcEEEEeecCCH-HHHHHHHhcCCEEEE--CHHHHHh-----------hccC---CC
Confidence 0 0 11122222345666888876554 678888899987765 7742111 0111 23
Q ss_pred CCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHh--cCCCCHHHHHHHH
Q 014320 342 PIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVE--SGQISVTDYVRLT 419 (427)
Q Consensus 342 plr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~--~~~l~l~~~v~~~ 419 (427)
| +.++++.|+.+++|||..+.+...+.. .+.++..++..... ...+++.++++++
T Consensus 280 ~---------~~~~~~~Gv~v~lGtD~~~~~~~~d~~--------------~~~~~a~~~~~~~~~~~~~~~~~~al~~a 336 (424)
T PRK08393 280 P---------LRKLLNAGVNVALGTDGAASNNNLDML--------------REMKLAALLHKVHNLDPTIADAETVFRMA 336 (424)
T ss_pred C---------HHHHHHCCCcEEEecCCCccCCchhHH--------------HHHHHHHHHHhhccCCCCcCCHHHHHHHH
Confidence 4 455889999999999974322211111 13333333322211 1246889999999
Q ss_pred chhhhcC
Q 014320 420 STEWGRL 426 (427)
Q Consensus 420 t~npA~~ 426 (427)
|.|||+.
T Consensus 337 T~~~A~~ 343 (424)
T PRK08393 337 TQNGAKA 343 (424)
T ss_pred HHHHHHH
Confidence 9999984
|
|
| >COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-26 Score=226.25 Aligned_cols=323 Identities=19% Similarity=0.235 Sum_probs=201.2
Q ss_pred CCccEEEECcEEEcCCC--ceeeeEEEeCCeEEEeeCCCCC----CCCceEEeCCCCEEeccccccccccccCcC-----
Q 014320 51 SSSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINV----GDDVKVLDATGKFVMPGGIDPHTHLAMEFM----- 119 (427)
Q Consensus 51 ~~~~~~i~~~~i~~~~~--~~~~~i~i~~g~I~~vg~~~~~----~~~~~viD~~g~~v~PG~ID~H~H~~~~~~----- 119 (427)
|..+++++||+|++.+. .....|+|+||||++||+..+. .+.+++||++|++|+|||||+|.|+...-.
T Consensus 3 ~~adlil~nG~i~T~~~~~p~aeAvaI~dGrI~avG~~~~~~~~~~~~t~viDL~Gk~v~PGfvDaH~Hl~~~G~~~~~~ 82 (535)
T COG1574 3 MAADLILHNGRIYTMDEARPTAEAVAIKDGRIVAVGSDAELKALAGPATEVIDLKGKFVLPGFVDAHLHLISGGLSLLEL 82 (535)
T ss_pred cccceeEECCEEEeccCCCcceeEEEEcCCEEEEEcChHHHHhhcCCCceEEeCCCCEeccccchhhHHHHHhhhhhhcc
Confidence 36789999999999886 3568999999999999987432 256899999999999999999999755200
Q ss_pred -------------------------------------------------------------------------------C
Q 014320 120 -------------------------------------------------------------------------------G 120 (427)
Q Consensus 120 -------------------------------------------------------------------------------g 120 (427)
|
T Consensus 83 ~~~~~~~~~~~~~~i~~~a~~~~~~~w~~~vG~g~~~~~~~~~~~t~~~lD~~~~~~Pv~l~r~~~H~a~~Ns~aL~~~G 162 (535)
T COG1574 83 NLDGVRSLDDLLAALRRQAARTPPGQWVVVVGWGWDEQFWEERLPTLAELDAAAPDHPVLLIRLDGHVAVANSAALRLAG 162 (535)
T ss_pred cccccCCHHHHHHHHHHHHHhCCCCCceEEEEcChhhhccccCCCcHHHhhccCCCCCEEEEeccChHHHHhHHHHHHcC
Confidence 0
Q ss_pred CC--------------------------------------ChhhHH----H-HHHHHHcCCceEEecCcCCCCCcHHHHH
Q 014320 121 SE--------------------------------------TIDDFF----S-GQAAALAGGTTMHIDFVIPINGSLTAGF 157 (427)
Q Consensus 121 ~~--------------------------------------~~e~~~----~-~~~~~l~~GvTtv~d~~~~~~~~~~~~~ 157 (427)
.. .++... . +.+...+.|||++.|+.. . ......+
T Consensus 163 i~~~t~~p~gg~~~~d~~g~ptG~L~e~a~~~~~~~~~~~~~~~~~~~~~~~a~~~l~s~GiT~v~d~~~-~-~~~~~~~ 240 (535)
T COG1574 163 ITRDTPDPPGGIIGRDADGEPTGLLLENAQALVARLAPPPSPAEELEAAAARAARELNSLGITGVHDMAG-Y-QGYYADY 240 (535)
T ss_pred CCCCCCCCCCCcccccCCCCCCeeehHhhHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcCCeEEEcccc-c-ccchhHH
Confidence 00 000000 0 233557899999999875 2 2233334
Q ss_pred HHHHHHhccccceeceeccccCCChhhHHHHHHHHHH------cCCCeEEEEEec-------------------CCCccC
Q 014320 158 EAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKE------KGINSFKFFMAY-------------------KGSFMI 212 (427)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~g~~~ik~~~~~-------------------~~~~~~ 212 (427)
+.++.......+.+.+......... .++......+ .....+|+|.+. .|.+.+
T Consensus 241 ~~~r~~~~~~~l~~rv~~~l~~~~~--~~~~~~~~~~~~~~~~~~~g~~K~f~Dgslg~rtA~l~~~y~d~~~~~G~~l~ 318 (535)
T COG1574 241 EAYRALAAGGELPVRVALLLFTEDL--KEERLDLLRQTGAKGLLQGGGVKLFADGSLGERTALLAAPYADGPGPSGELLL 318 (535)
T ss_pred HHHHHHHhcCcceEEEEeeccccch--hhHHHhhcccCCccceeecCceEEEEeCCCCcchhhccCcccCCCCCCCCccc
Confidence 4444443322222222211111111 1111111111 223456777762 145567
Q ss_pred CHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCC
Q 014320 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292 (427)
Q Consensus 213 ~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~ 292 (427)
++++|.++++.+.++|+++.+|+.++..++..++.++ +........+.+..+.|++
T Consensus 319 ~~e~l~~~v~~a~~~gl~v~vHAiGD~Av~~~LdafE------------------------~~~~~~~~~~~r~rieH~~ 374 (535)
T COG1574 319 TEEELEELVRAADERGLPVAVHAIGDGAVDAALDAFE------------------------KARKKNGLKGLRHRIEHAE 374 (535)
T ss_pred CHHHHHHHHHHHHHCCCcEEEEEechHHHHHHHHHHH------------------------HHhhhcCCccCCceeeeee
Confidence 8999999999999999999999999988876654333 2222222346788999999
Q ss_pred CHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCC
Q 014320 293 SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFN 372 (427)
Q Consensus 293 ~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~ 372 (427)
.... ++++++++.| +++.++|++++.....+.+ .++ ..+...++|+++ +++.|+.++.|||. |..
T Consensus 375 ~v~~-~~i~R~~~Lg--v~~svQP~f~~~~~~~~~~-rlG-~~r~~~~~p~~~---------ll~~G~~la~gSD~-Pv~ 439 (535)
T COG1574 375 LVSP-DQIERFAKLG--VIASVQPNFLFSDGEWYVD-RLG-EERASRSYPFRS---------LLKAGVPLAGGSDA-PVE 439 (535)
T ss_pred ecCH-hHHHHHHhcC--ceEeeccccccccchHHHH-hhh-hhhhhccCcHHH---------HHHCCCeEeccCCC-CCC
Confidence 8875 7889998877 5777899888765433321 111 245666777765 99999999999996 553
Q ss_pred hhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 373 STQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 373 ~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
+.+. +.. +....++-..--.....+..||++++++++|.|+|..
T Consensus 440 ~~dP------~~~----i~~AVtr~~~~g~~~~~~~~L~~~eAL~~yT~~~A~a 483 (535)
T COG1574 440 PYDP------WLG----IYAAVTRKTPGGRVLGPEERLTREEALRAYTEGGAYA 483 (535)
T ss_pred CCCh------HHH----HHHHHcCCCCCCCCCccccccCHHHHHHHHhhhhHHh
Confidence 3221 111 1111111100000000012699999999999999964
|
|
| >PRK14085 imidazolonepropionase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=212.21 Aligned_cols=289 Identities=18% Similarity=0.142 Sum_probs=176.4
Q ss_pred cEEEEC-cEEEcCCC---------ceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcC-C--
Q 014320 54 KILIKG-GTVVNAHH---------QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G-- 120 (427)
Q Consensus 54 ~~~i~~-~~i~~~~~---------~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~-g-- 120 (427)
+++|+| +.|++.+. .+++.|+|+||||++|++..+.+.+.++||++|++|||||||+|+|+..... +
T Consensus 2 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~~v~i~~g~I~~Vg~~~~~~~~~~~iD~~g~~v~PGlId~H~Hl~~~~~r~~~ 81 (382)
T PRK14085 2 STLITNIGELVTNDPELGEGPLGVLRDAAVVVEGGRVAWVGPAADAPAADERVDAGGRAVLPGFVDSHSHLVFAGDRSAE 81 (382)
T ss_pred cEEEEcccEEEcCCCcccCCCcccccCcEEEEECCEEEEEcCCccCCCCCeEEeCCCCEEecCeEecCcCccccCChhHH
Confidence 478999 59998652 3568999999999999986544456789999999999999999999965311 0
Q ss_pred -----------------------CCChhhHHH----HHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccce---
Q 014320 121 -----------------------SETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMD--- 170 (427)
Q Consensus 121 -----------------------~~~~e~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~--- 170 (427)
..+.++.+. ..+.++++||||++|+..... ...+.++..+..+ +....
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~t~e~~~~~a~~~~~~~l~~G~Ttv~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~ 159 (382)
T PRK14085 82 FAARMAGEPYSAGGIRTTVAATRAASDEELRANVRRLVAEALRQGTTTVETKTGYGL-TVEDEARSARIAA-EFTDEVTF 159 (382)
T ss_pred HHhhhcCCCccCCChHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCceEEEcCCcCCC-CHHHHHHHHHHHH-Hhhhccee
Confidence 012233332 345679999999999753321 2333343333222 11111
Q ss_pred eceec-cc--cCCChhhHHHH----HHHHHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHH
Q 014320 171 YGFHM-AI--TKWDEVVSDEM----EVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFE 243 (427)
Q Consensus 171 ~~~~~-~~--~~~~~~~~~~~----~~l~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~ 243 (427)
.+.+. +. ....++.++.+ ...+ ...++.+|++.+.. ..+.++++++++.|+++|+++.+|+.+.... .
T Consensus 160 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~idi~~~~~---~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~-~ 234 (382)
T PRK14085 160 LGAHVVPPEYAGDADEYVDLVCGPMLDAV-APHARWIDVFCERG---AFDEDQSRRVLTAGRAAGLGLRVHGNQLGPG-P 234 (382)
T ss_pred eccccCCcccCCCHHHHHHHHHHHHHHHH-HHhCCeEEEEecCC---CCCHHHHHHHHHHHHHcCCCeEEEeCcccCC-h
Confidence 11111 10 01111222222 2333 34577788887532 4688999999999999999999998542110 0
Q ss_pred HHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCc
Q 014320 244 GQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDD 323 (427)
Q Consensus 244 ~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~ 323 (427)
..+.+.+. |. ..+.|+...+. +.++++++.|+.++ .||.+.+...
T Consensus 235 ~v~~~~~~-------------------------------g~-~~i~H~~~l~~-~~~~~la~~gv~~~--~~P~~~~~~~ 279 (382)
T PRK14085 235 GVRLAVEL-------------------------------GA-ASVDHCTYLTD-ADVDALAGSGTVAT--LLPGAEFSTR 279 (382)
T ss_pred HHHHHHHc-------------------------------CC-CcHHHhCCCCH-HHHHHHHHcCCEEE--ECcHHHHhcC
Confidence 01112222 22 23667766554 67888888886544 4776322100
Q ss_pred ccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHH
Q 014320 324 SWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDT 403 (427)
Q Consensus 324 ~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~ 403 (427)
.. .+ .++++++.|+.+++|||+.|+.+... .++..+..
T Consensus 280 -----------~~---~~---------~~~~l~~aGv~v~lgsD~~~~~~~~~-------------------~~~~~~~~ 317 (382)
T PRK14085 280 -----------QP---YP---------DARRLLDAGVTVALASDCNPGSSYTS-------------------SMPFCVAL 317 (382)
T ss_pred -----------CC---Cc---------hHHHHHHCCCcEEEEeCCCCCCChHH-------------------HHHHHHHH
Confidence 00 12 36679999999999999855432111 11222212
Q ss_pred HHhcCCCCHHHHHHHHchhhhcC
Q 014320 404 MVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 404 ~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
.+...+++++++++++|.|||+.
T Consensus 318 ~~~~~~l~~~~al~~aT~~~A~~ 340 (382)
T PRK14085 318 AVRQMGMTPAEAVWAATAGGARA 340 (382)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHH
Confidence 33456799999999999999974
|
|
| >TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-24 Score=208.54 Aligned_cols=312 Identities=17% Similarity=0.144 Sum_probs=189.1
Q ss_pred EEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCC----CCceEEeCCCCEEeccccccccccccCcC-CCCChhhHHH
Q 014320 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVG----DDVKVLDATGKFVMPGGIDPHTHLAMEFM-GSETIDDFFS 129 (427)
Q Consensus 55 ~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~----~~~~viD~~g~~v~PG~ID~H~H~~~~~~-g~~~~e~~~~ 129 (427)
++|+|++|++++.....+|+|+||||++|++..+.+ ....++|++|++|+|||||+|+|+..... +.........
T Consensus 2 ~li~n~~v~~~~~~~~~dvlI~~gkI~~Ig~~~~~~~~~~~~~~i~d~~G~~v~PGlID~HvH~~~gg~~~~~~~~~~e~ 81 (389)
T TIGR01975 2 TLLKGAEVYAPEYIGKKDILIANDKIIAIADEIPSTKDFVPNCVVVGLEGMIAVPGFIDQHVHIIGGGGEGGPTTRTPEL 81 (389)
T ss_pred EEEECcEEEcCCcCcceeEEEECCEEEEEcCCccccccCCCCeEEECCCCCEEccCEeehhhccccccccCCCccCCHHH
Confidence 589999999987666789999999999999875432 22335566999999999999999876310 1110011223
Q ss_pred HHHHHHcCCceEEecCcCCCCC-----cHHHHHHHHHHHhccccceecee-ccccCCChhhHHHHHHHHHHcCCCeEE-E
Q 014320 130 GQAAALAGGTTMHIDFVIPING-----SLTAGFEAYEKKAKNSCMDYGFH-MAITKWDEVVSDEMEVMVKEKGINSFK-F 202 (427)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~g~~~ik-~ 202 (427)
.+..++++||||++|+...... ...+..+.+.+.+.+.++..+.. .+....+.....++.. ...+.++| +
T Consensus 82 ~~~e~l~~GvTTv~d~~g~~~~~~~~~~~~a~~~al~~~Gir~~~~~g~~~~p~~t~t~~~~~d~~~---~d~iiG~~~i 158 (389)
T TIGR01975 82 TLSDITKGGVTTVVGLLGTDGITRHMESLLAKARALEEEGISCYMLTGAYHVPSRTITGSVESDLLL---IDKVIGVGEI 158 (389)
T ss_pred HHHHHHhCCcEEEecCcccCccccChhhHHHHHHHHHHhCCEEEEEcccccCCCcccccchhhheee---ehhhcccceE
Confidence 5778899999999998643221 23345566666665544433322 1111122222222221 23455774 8
Q ss_pred EEecCCCccCCHHHHHHHHHHHHHcC----Cc--EEEecC-ChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHH
Q 014320 203 FMAYKGSFMINDELLIEGFKRCKSLG----AL--AMVHAE-NGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRA 275 (427)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~a~~~g----~~--v~~H~e-~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~ 275 (427)
.++.+.....+.++|.++.+.++..| ++ +++|.- .+..++...+
T Consensus 159 a~sd~r~~~~~~~~l~~~~~~~~~~g~~~~~~g~~~vH~g~~~~~l~~l~~----------------------------- 209 (389)
T TIGR01975 159 AISDHRSAQPTVEHLTNMAAEARVGGLLGGKPGIVNFHVGDSKRALQPIYE----------------------------- 209 (389)
T ss_pred EEccCcCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCchhhHHHHHH-----------------------------
Confidence 88887777789999999999999998 88 999974 4444433333
Q ss_pred HHHHHhcCCCEEEE---cCC-CHHHHHHHHHHhhcCCCEEEecCcc-ceeeCcccccCCCcccCceeEEcCCCCCcccHH
Q 014320 276 IRLAEFVNTPLYVV---HVM-SMDAMEEIAKARKAGQRVIGEPVVS-GLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNK 350 (427)
Q Consensus 276 ~~~~~~~g~~~~i~---H~~-~~~~~~~i~~~~~~G~~v~~~~~p~-~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~ 350 (427)
+.++.+.+.|.- |+. +..-++..-++.++|..+-.. .|- ..++.. ......+
T Consensus 210 --~~~~~di~~~~f~pth~~r~~~l~~~~i~~~~~gg~iDv~-~~~~~~~l~~--------------------~~~~~~~ 266 (389)
T TIGR01975 210 --LVENTDVPITQFLPTHINRNVPLFEAGLEFAKKGGTIDLT-SSIDPQFRKE--------------------GEVAPAE 266 (389)
T ss_pred --HHHhcCCChhheecCccCCCHHHHHHHHHHHHhCCcEEEe-CCCCccchhc--------------------cccChHH
Confidence 333333332222 332 222233333344455444432 221 000000 0011235
Q ss_pred HHHHHHhcCCc---eEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 351 ALQAALATGIL---QLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 351 ~l~~~l~~G~~---~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
.+..++++|+. ++++||+....+..+. +-.....|+.+.+..+..+. .++..++++++++++++|.|||++
T Consensus 267 ~~~~~~~~Gv~~~~i~isSD~~gs~p~~~~----~g~~~~~g~g~~~sl~~~~~-~lv~~g~ls~~eal~~~T~npA~~ 340 (389)
T TIGR01975 267 GIKKALEAGVPLEKVTFSSDGNGSQPFFDE----NGELTGLGVGSFETLFEEVR-EAVKDGDVPLEKALRVITSNVAGV 340 (389)
T ss_pred HHHHHHHcCCCcceEEEEeCCCCCCCcccc----ccccccCCcCcHHHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHHH
Confidence 67889999986 4999997422111110 11223567888776665554 667778899999999999999985
|
The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases. |
| >cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-24 Score=213.65 Aligned_cols=267 Identities=19% Similarity=0.179 Sum_probs=156.5
Q ss_pred EECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCC---------------
Q 014320 57 IKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS--------------- 121 (427)
Q Consensus 57 i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~--------------- 121 (427)
|+|++|+++. ..+++|+|+||+|++||+..+.+++.++||++|++|+|||||+|+|+.+.+...
T Consensus 2 ~~~~~~~~~~-~~~~~v~I~~g~I~~Vg~~~~~~~~~~vID~~g~~v~PGlId~H~H~~~~~~~~~~~~~~~~~~~~~~~ 80 (398)
T cd01293 2 LRNARLADGG-TALVDIAIEDGRIAAIGPALAVPPDAEEVDAKGRLVLPAFVDPHIHLDKTFTGGRWPNNSGGTLLEAII 80 (398)
T ss_pred eeeeEEeCCC-ceEEEEEEECCEEEEEecCCCCCCCCceEeCCCCEEccCEeeeeeccCcccccCCCCCCCccccHHHHH
Confidence 7899999974 577899999999999998755455678999999999999999999997642110
Q ss_pred --------CChhhHH----HHHHHHHcCCceEEecCcCCCCC---cHHHH-HHHHHHHhccccceeceeccccCC-Chhh
Q 014320 122 --------ETIDDFF----SGQAAALAGGTTMHIDFVIPING---SLTAG-FEAYEKKAKNSCMDYGFHMAITKW-DEVV 184 (427)
Q Consensus 122 --------~~~e~~~----~~~~~~l~~GvTtv~d~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 184 (427)
.++++++ .....++++||||++++...... ...+. .+...+.+.+.............. .++.
T Consensus 81 ~~~~~~~~~t~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (398)
T cd01293 81 AWEERKLLLTAEDVKERAERALELAIAHGTTAIRTHVDVDPAAGLKALEALLELREEWADLIDLQIVAFPQHGLLSTPGG 160 (398)
T ss_pred HHHHHHhccChHHHHHHHHHHHHHHHHcChhheeeeecccccccchHHHHHHHHHHHhhccceEEEEeccCccccCCCCH
Confidence 1222222 23456799999999886532211 11112 222122211111111000000001 1333
Q ss_pred HHHHHHHHHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-CChhhHHHHHHHHHHcCCCCcccccccC
Q 014320 185 SDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITGPEGHALSR 263 (427)
Q Consensus 185 ~~~~~~l~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~~l~~~G~~~~~~~~~~~ 263 (427)
.+.+++.. +.|...++. ..+.....+++++++++++.|+++|+++++|+ +......
T Consensus 161 ~~~v~~~~-~~g~~~~~~-~~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~--------------------- 217 (398)
T cd01293 161 EELMREAL-KMGADVVGG-IPPAEIDEDGEESLDTLFELAQEHGLDIDLHLDETDDPGS--------------------- 217 (398)
T ss_pred HHHHHHHH-HhCCCEEeC-CCCCcCCccHHHHHHHHHHHHHHhCCCCEEEeCCCCCcch---------------------
Confidence 44455554 455543432 22222345688999999999999999999997 4432211
Q ss_pred CHHHHHHHHHHHHHHHHhcC--CCEEEEcCCCHH------HHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCc
Q 014320 264 PPLLEGEATTRAIRLAEFVN--TPLYVVHVMSMD------AMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAA 335 (427)
Q Consensus 264 p~~~e~~a~~~~~~~~~~~g--~~~~i~H~~~~~------~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~ 335 (427)
..+...++.+.+.| .++.+.|+.... ..+.+++++++|+.+++ ||.......... . .
T Consensus 218 ------~~~~~~~~~~~~~g~~~~~~i~H~~~~~~~~~~~~~~~~~~l~~~g~~v~~--~p~s~~~l~~~~-~-~----- 282 (398)
T cd01293 218 ------RTLEELAEEAERRGMQGRVTCSHATALGSLPEAEVSRLADLLAEAGISVVS--LPPINLYLQGRE-D-T----- 282 (398)
T ss_pred ------hHHHHHHHHHHHhCCCCCEEeeecchhhcCCHHHHHHHHHHHHHcCCeEEe--CCCcchhhcccc-c-C-----
Confidence 11112223333333 257788987543 13668999999988776 664322110000 0 0
Q ss_pred eeEEcCCCCCcccHHHHHHHHhcCCceEEecCCC
Q 014320 336 KYVMSPPIRASGHNKALQAALATGILQLVGTDHC 369 (427)
Q Consensus 336 ~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~ 369 (427)
.|. ......+.++++.|+.+++|||+.
T Consensus 283 ----~~~---~~~~~~~~~~~~~Gv~v~lGTD~~ 309 (398)
T cd01293 283 ----TPK---RRGVTPVKELRAAGVNVALGSDNV 309 (398)
T ss_pred ----CCC---CCCCCcHHHHHHCCCeEEECCCCC
Confidence 000 011234677999999999999974
|
Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric. |
| >cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.3e-24 Score=208.13 Aligned_cols=310 Identities=18% Similarity=0.160 Sum_probs=176.9
Q ss_pred EEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCC--CCceEEeCCCCEEeccccccccccccCcCC-CCChhhHHHHH
Q 014320 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVG--DDVKVLDATGKFVMPGGIDPHTHLAMEFMG-SETIDDFFSGQ 131 (427)
Q Consensus 55 ~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~--~~~~viD~~g~~v~PG~ID~H~H~~~~~~g-~~~~e~~~~~~ 131 (427)
++|+|++|++++...+++|+|+||+|++|++....+ .+.++||++|++|+|||||+|+|+...... .....+.....
T Consensus 2 ~~i~~~~v~~~~~~~~~~v~i~~g~I~~v~~~~~~~~~~~~~~id~~g~~v~PG~id~H~H~~~~~~~~~~~~~~~~~~~ 81 (387)
T cd01308 2 TLIKNAEVYAPEYLGKKDILIAGGKILAIEDQLNLPGYENVTVVDLHGKILVPGFIDQHVHIIGGGGEGGPSTRTPEVTL 81 (387)
T ss_pred EEEECcEEeCCCCccceEEEEECCEEEEEeCCcccccCCCCeEEECCCCEEccCeeehhhCcccccCCCcccccCHHHHH
Confidence 479999999977667889999999999999865332 356899999999999999999998653100 00112222345
Q ss_pred HHHHcCCceEEecCcCCCCC--c---HHHHHHHHHHHhccccceeceeccccCCChhhH-HHHHHHHHHcCCCeEEEEE-
Q 014320 132 AAALAGGTTMHIDFVIPING--S---LTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVS-DEMEVMVKEKGINSFKFFM- 204 (427)
Q Consensus 132 ~~~l~~GvTtv~d~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~g~~~ik~~~- 204 (427)
..++++|+||++|+....+. . ..+..+...+.+.+.....+++........+.+ .++....+..+ ++...
T Consensus 82 ~~~~~~G~tt~~d~~~~~~~~~~~~~~~~~~~~~~~~Gv~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~g~~~~ 158 (387)
T cd01308 82 SDLTTAGVTTVVGCLGTDGISRSMEDLLAKARALEEEGITCFVYTGSYEVPTRTITGSIRKDLLLIDKVIG---VGEIAI 158 (387)
T ss_pred HHHHhCCceEEecCcCCCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCcCchhhHHHHHHHHHHhcC---cceEEE
Confidence 67899999999998632211 1 122333344444444443332211000011111 11211111112 11111
Q ss_pred ecCCCccCCHHHHHHHHHHHHHcCC------cEEEecC-ChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHH
Q 014320 205 AYKGSFMINDELLIEGFKRCKSLGA------LAMVHAE-NGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIR 277 (427)
Q Consensus 205 ~~~~~~~~~~~~l~~~~~~a~~~g~------~v~~H~e-~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~ 277 (427)
...........++.++.+.++..+. .+++|.. .. .++++.++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~vh~~~~~-------------------------------~~~~~i~~ 207 (387)
T cd01308 159 SDHRSSQPTVEELARIAAEARVGGLLGGKAGIVHIHLGDGK-------------------------------RALSPIFE 207 (387)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCch-------------------------------HHHHHHHH
Confidence 2222233456677777777765432 3666653 32 23344445
Q ss_pred HHHhcCCCE-EEEcCCCHHHHH----HHHHHhhcCCCE--EEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHH
Q 014320 278 LAEFVNTPL-YVVHVMSMDAME----EIAKARKAGQRV--IGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNK 350 (427)
Q Consensus 278 ~~~~~g~~~-~i~H~~~~~~~~----~i~~~~~~G~~v--~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~ 350 (427)
+.++.|+++ +++|.......+ .++ ..++|..+ ....+|+++ ..||++ ..+
T Consensus 208 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~G~~v~i~~~~~~~~~-------------------~~~~~~---~~~ 264 (387)
T cd01308 208 LIEETEIPITQFLPTHINRTAPLFEQGVE-FAKMGGTIDLTSSIDPQFR-------------------KEGEVR---PSE 264 (387)
T ss_pred HHHhcCCCcceeECCcccCCHHHHHHHHH-HHHcCCcEEEECCCCcccc-------------------ccCccC---hHH
Confidence 555556655 666665432223 233 33345433 232333222 124432 357
Q ss_pred HHHHHHhcCCc---eEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 351 ALQAALATGIL---QLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 351 ~l~~~l~~G~~---~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
.+|.+++.|.. ++++|||....+.... .+.+ ...|.++.++.++.+. .+++.++++++++++++|.|||++
T Consensus 265 ~l~~~~~~g~~~d~i~l~TD~~~~~p~~~~--~g~~--~~~g~~~~~~~~~~~~-~~v~~~~i~~~~al~~~T~npA~~ 338 (387)
T cd01308 265 ALKRLLEQGVPLERITFSSDGNGSLPKFDE--NGNL--VGLGVGSVDTLLREVR-EAVKCGDIPLEVALRVITSNVARI 338 (387)
T ss_pred HHHHHHHhCCCCCcEEEEECCCCCcccCcc--CCeE--EecCcCcHHHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHHH
Confidence 78899999863 5999998522111100 0111 2468888888888777 677778899999999999999985
|
Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides. |
| >PRK08418 chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=213.77 Aligned_cols=311 Identities=13% Similarity=0.043 Sum_probs=187.7
Q ss_pred EEEECcEEEcCCC----ceeeeEEEeCCeEEEeeCCCCC---CCCceEEeCCCCEEeccccccccccccCcC-CCC----
Q 014320 55 ILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GSE---- 122 (427)
Q Consensus 55 ~~i~~~~i~~~~~----~~~~~i~i~~g~I~~vg~~~~~---~~~~~viD~~g~~v~PG~ID~H~H~~~~~~-g~~---- 122 (427)
.+|+|++|++++. ..+++|+|+ |+|++||+..+. .++.++||++|++|+|||||+|+|+.+... +..
T Consensus 2 ~~i~~~~v~t~~~~~~~~~~~~v~v~-~~I~~ig~~~~~~~~~~~~~vid~~g~~v~PG~Vn~H~H~~~~~~rg~~~~~~ 80 (408)
T PRK08418 2 KIIGASYIFTCDENFEILEDGAVVFD-DKILEIGDYENLKKKYPNAKIQFFKNSVLLPAFINPHTHLEFSANKTTLDYGD 80 (408)
T ss_pred EEEEccEEEecCCCCceeeccEEEEC-CEEEEecCHHHHHhhCCCCcEEecCCcEEccCccccccchhhhhhccccCCCc
Confidence 4789999998762 357899999 999999974321 123468999999999999999999976421 110
Q ss_pred ---------------ChhhHH----HHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceeccccCCChh
Q 014320 123 ---------------TIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEV 183 (427)
Q Consensus 123 ---------------~~e~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (427)
+++..+ .+..+++++||||+.|+.... ..+++..+.+.|..+............++
T Consensus 81 ~~~wl~~~~~~~~~l~~~~~~~~~~~~~~E~l~~GtTtv~d~~~~~-----~~~~a~~~~GiR~~~~~~~~~~~~~~~~~ 155 (408)
T PRK08418 81 FIPWLGSVINHREDLLEKCKGALIQQAINEMLKSGVGTIGAISSFG-----IDLEICAKSPLRVVFFNEILGSNASAVDE 155 (408)
T ss_pred hHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHhcCceEEEEeecch-----hhHHHHHhcCCeEEEEeeeeCCCccchhh
Confidence 111111 233467999999999975321 22455666666654322211111011111
Q ss_pred hHHHHHHHHHH---cCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-CChhhHHHHHHH-------HHHcC
Q 014320 184 VSDEMEVMVKE---KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKR-------MIELG 252 (427)
Q Consensus 184 ~~~~~~~l~~~---~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~~-------l~~~G 252 (427)
..+.+.+.... ...+.++..++++++++++++.++++.+.|+++|+++++|+ |+..+++.+.+. ++..|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~aph~~~t~s~e~l~~~~~~A~~~~~~i~~H~~E~~~E~~~~~~~~G~~~~~~~~~~ 235 (408)
T PRK08418 156 LYQDFLARFEESKKFKSKKFIPAIAIHSPYSVHPILAKKALQLAKKENLLVSTHFLESKAEREWLEESKGWFKKFFEKFL 235 (408)
T ss_pred hHHHHHHHHHhhhcccCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCHHHHHHHHhccCchhhhhhhhc
Confidence 11111111111 12356888889999999999999999999999999999996 787776555321 22222
Q ss_pred CCCcccccccCCHHHHHHHHHHHHHHHHhc-CCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCc
Q 014320 253 ITGPEGHALSRPPLLEGEATTRAIRLAEFV-NTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDF 331 (427)
Q Consensus 253 ~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~-g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~ 331 (427)
...+ ...+| ++..... +.+..+.|+...+. +.++.+++.|+.|+. ||....
T Consensus 236 ~~~~---~~~~p-----------v~~l~~~g~~~~~~~H~~~~~~-~di~~la~~g~~v~~--cP~sn~----------- 287 (408)
T PRK08418 236 KEPK---PLYTP-----------KEFLELFKGLRTLFTHCVYASE-EELEKIKSKNASITH--CPFSNR----------- 287 (408)
T ss_pred cccc---ccCCH-----------HHHHHHhCCCCeEEEecccCCH-HHHHHHHHcCCcEEE--CHhHHH-----------
Confidence 1000 00011 1111122 35778999987765 678888889987776 775221
Q ss_pred ccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCC
Q 014320 332 VTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQIS 411 (427)
Q Consensus 332 ~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~ 411 (427)
..|.. .+| +.++++.|+.+++|||..+.++..+.+ .+.++..+..+. .....+
T Consensus 288 ~lg~g---~~p---------~~~~~~~Gi~v~lGtD~~~~~~~~~~~--------------~em~~~~~~~~~-~~~~~~ 340 (408)
T PRK08418 288 LLSNK---ALD---------LEKAKKAGINYSIATDGLSSNISLSLL--------------DELRAALLTHAN-MPLLEL 340 (408)
T ss_pred HhcCC---Ccc---------HHHHHhCCCeEEEeCCCCCCCCCcCHH--------------HHHHHHHHHhcc-CCcccc
Confidence 11111 244 456999999999999975443322211 122332221110 011234
Q ss_pred HHHHHHHHchhhhcC
Q 014320 412 VTDYVRLTSTEWGRL 426 (427)
Q Consensus 412 l~~~v~~~t~npA~~ 426 (427)
..++++++|.|+|+.
T Consensus 341 ~~~~l~~aT~~gA~a 355 (408)
T PRK08418 341 AKILLLSATRYGAKA 355 (408)
T ss_pred HHHHHHHHHHHHHHH
Confidence 689999999999974
|
|
| >COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.5e-24 Score=210.59 Aligned_cols=312 Identities=21% Similarity=0.280 Sum_probs=199.7
Q ss_pred cEEEECcEEEcCCC---ceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCC----------
Q 014320 54 KILIKGGTVVNAHH---QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG---------- 120 (427)
Q Consensus 54 ~~~i~~~~i~~~~~---~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g---------- 120 (427)
.++|+|..++..+. .+.+++.|+||||+.||+..+.+++.++||++|++|+|||||+|+|+.++...
T Consensus 3 ~~~i~~~~~~~~d~~~~~~~~~~~i~~g~I~~ig~~~~~~~~~~~iD~~~~lv~Pgfvn~H~H~~~t~~~g~~~~~~l~~ 82 (421)
T COG0402 3 MLLIRGDLLLTNDPEGRIEDGDLVIEDGKIVAIGANAEGPPDEEVIDAKGKLVLPGFVNAHTHLDQTLLRGLADDLPLLE 82 (421)
T ss_pred ceeeeCcEEeecCcccceeeeeEEEcCCEEEEeCCcCCCCCCceeecCCCCEeccCccccccchHHHHHhhhhcccchHH
Confidence 36788888887543 25699999999999999876543567899999999999999999998775210
Q ss_pred ------------CCChhhHHH----HHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceec-----cccC
Q 014320 121 ------------SETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM-----AITK 179 (427)
Q Consensus 121 ------------~~~~e~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 179 (427)
..++++.+. ....++++|||++..+...........++...+.+.+......+.. ....
T Consensus 83 wl~~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~t~~~~~~~~~~~~~~~~~~a~~~~g~r~~~~~~~~~~~~p~~~~~ 162 (421)
T COG0402 83 WLERYVWPREARLLTEEDLYARALLALLEMLRNGTTTARTHVDVVAESADAAFEAALEVGLRAVLGPVLQDVAFPDPGAE 162 (421)
T ss_pred HHHHHHhHHHhhcCCHHHHHHHHHHHHHHHHhcCccccccccchhhhhHHHHHHHHHHhCCeeEeeeccccCCCCccccc
Confidence 113333332 3345799999997665433222345567777777766444333222 1111
Q ss_pred CChhhHHHHHHHHH-HcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-CChhhHHHHHHHHHHcCCCCcc
Q 014320 180 WDEVVSDEMEVMVK-EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITGPE 257 (427)
Q Consensus 180 ~~~~~~~~~~~l~~-~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~~l~~~G~~~~~ 257 (427)
..+. +++.+++++ +.+...+++...++.+..++++.++.+.+.++++|+++++|+ |+.+++....+ ..|..
T Consensus 163 ~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~v~iH~~E~~~e~~~~~~---~~g~~--- 235 (421)
T COG0402 163 TDEE-LEETEELLREAHGLGRDVVGLAPHFPYTVSPELLESLDELARKYGLPVHIHLAETLDEVERVLE---PYGAR--- 235 (421)
T ss_pred chHH-HHHHHHHHHHHhcCCCeeEEEecCCCCCCCHHHHHHHHHHHhcCCCceEEEecCcHHHHHHHHh---hcCCC---
Confidence 1111 233444443 345557788889999999999999999999999999999996 99888876654 11210
Q ss_pred cccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCcee
Q 014320 258 GHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKY 337 (427)
Q Consensus 258 ~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~ 337 (427)
| .+.+......+.+..+.|+..... +.++.+++.|+.|++ ||.. |...+++
T Consensus 236 ------~--------~~~~~~~g~l~~~~~~~H~~~~~~-~e~~~l~~~g~~v~~--cP~s-----------N~~L~sG- 286 (421)
T COG0402 236 ------P--------VERLDLLGLLGSHTLLAHCVHLSE-EELELLAESGASVVH--CPRS-----------NLKLGSG- 286 (421)
T ss_pred ------H--------HHHHHHcCCCCCCeEEEEeccCCH-HHHHHHhhCCCeEEE--Ccch-----------hccccCC-
Confidence 0 011111222234556777766553 445666688988876 7753 2222233
Q ss_pred EEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHH--HH
Q 014320 338 VMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVT--DY 415 (427)
Q Consensus 338 ~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~--~~ 415 (427)
..| +++++..|+++.+|||...+++..+.+ .+.+...++.+.......+.. ++
T Consensus 287 --~~p---------~~~~~~~gv~v~~gTD~~~~~~~~d~l--------------~~~~~a~~l~~~~~~~~~~~~~~~~ 341 (421)
T COG0402 287 --IAP---------VRRLLERGVNVALGTDGAASNNVLDML--------------REMRTADLLQKLAGGLLAAQLPGEA 341 (421)
T ss_pred --CCC---------HHHHHHcCCCEEEecCCccccChHHHH--------------HHHHHHHHHHHhhcCCCcccchHHH
Confidence 233 456899999999999998877644432 244555555433221111121 38
Q ss_pred HHHHchhhhcC
Q 014320 416 VRLTSTEWGRL 426 (427)
Q Consensus 416 v~~~t~npA~~ 426 (427)
++++|.|+||.
T Consensus 342 l~~aT~~gA~a 352 (421)
T COG0402 342 LDMATLGGAKA 352 (421)
T ss_pred HHHHHhhHHHH
Confidence 99999999984
|
|
| >cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-24 Score=212.24 Aligned_cols=290 Identities=16% Similarity=0.052 Sum_probs=176.0
Q ss_pred eeeeE-EEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCC-------------------------C
Q 014320 69 QIADV-YVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS-------------------------E 122 (427)
Q Consensus 69 ~~~~i-~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~-------------------------~ 122 (427)
++++| +|+||||++||+... .++||++|++|+|||||+|+|+.+..... .
T Consensus 9 ~~~~i~~v~~g~I~~Vg~~~~----~~~iD~~g~lv~PGfVn~H~Hl~~~~~rg~~~~~~~~~~~l~~w~~~~~~~~~~~ 84 (418)
T cd01313 9 RNVRIEVDADGRIAAVNPDTA----TEAVALLGGALLPGMPNLHSHAFQRAMAGLTEYRGSAADSFWTWRELMYRFAARL 84 (418)
T ss_pred cCeEEEEeCCCeEEEecCCCC----CcccccCCCeeccCccccCccHHHHHhcccccccCCCCCChhhHHHHHHHHHHhC
Confidence 46899 999999999998532 25699999999999999999998752110 1
Q ss_pred ChhhHHH----HHHHHHcCCceEEecCcCCCCC-----------cHHHHHHHHHHHhccccceeceec--c---ccCC--
Q 014320 123 TIDDFFS----GQAAALAGGTTMHIDFVIPING-----------SLTAGFEAYEKKAKNSCMDYGFHM--A---ITKW-- 180 (427)
Q Consensus 123 ~~e~~~~----~~~~~l~~GvTtv~d~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~-- 180 (427)
++++++. +...++++||||+.|+...... .....+++..+.+.|..+...+.. + ....
T Consensus 85 t~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~GiR~~~~~~~~~~~~~~~~~~~~~ 164 (418)
T cd01313 85 TPEQIEAIARQLYIEMLLAGITAVGEFHYVHHDPDGTPYADPAELAQRVIAAASDAGIGITLLPVLYARAGFGGPAPNPG 164 (418)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCEEEEeeeeccCCCCCccCChhhhHHHHHHHHHHhCCeEEeeeeEEeccCCCCCCCchh
Confidence 2223322 2345699999999997521110 123455666666666443322211 0 0000
Q ss_pred -------ChhhHHHHHHHHH-HcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-CChhhHHHHHHHHHHc
Q 014320 181 -------DEVVSDEMEVMVK-EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIEL 251 (427)
Q Consensus 181 -------~~~~~~~~~~l~~-~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~~l~~~ 251 (427)
.++.++.+.+++. ......+...+.+++...++++.++++++.|++ |+++++|+ |+..++..+.+ ..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~s~e~l~~~~~~a~~-g~~i~~H~~e~~~e~~~~~~---~~ 240 (418)
T cd01313 165 QRRFINGYEDFLGLLEKALRAVKEHAAARIGVAPHSLRAVPAEQLAALAALASE-KAPVHIHLAEQPKEVDDCLA---AH 240 (418)
T ss_pred hhhhcccHHHHHHHHHHHhhhhccCCceEEEEccCCCCCCCHHHHHHHHHHHhc-CCceEEEeCCCHHHHHHHHH---Hc
Confidence 0122223333221 122335677778888888999999999999999 99999997 66544433321 22
Q ss_pred CCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCc
Q 014320 252 GITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDF 331 (427)
Q Consensus 252 G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~ 331 (427)
|.. | ++ .+......+.++.+.|+...+. +.++++++.|+.++. ||...+..
T Consensus 241 g~~---------~-------i~-~l~~~g~l~~~~~~~H~~~l~~-~~~~~la~~g~~v~~--~P~sn~~l--------- 291 (418)
T cd01313 241 GRR---------P-------VE-LLLDHGHLDARWCLVHATHLTD-NETLLLGRSGAVVGL--CPTTEANL--------- 291 (418)
T ss_pred CCC---------H-------HH-HHHHcCCCCCCEEEEeCCCCCH-HHHHHHHHcCCEEEE--CCCchhhc---------
Confidence 221 1 11 1111123456788999987765 668999999987775 77633211
Q ss_pred ccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHh-----
Q 014320 332 VTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVE----- 406 (427)
Q Consensus 332 ~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~----- 406 (427)
+. ..+|+ .++++.|+.+++|||..+..... .+.+......+...
T Consensus 292 --g~---g~~p~---------~~l~~~Gv~v~lGtD~~~~~d~~-----------------~~~~~~~~~~~~~~~~~~~ 340 (418)
T cd01313 292 --GD---GIFPA---------AALLAAGGRIGIGSDSNARIDLL-----------------EELRQLEYSQRLRDRARNV 340 (418)
T ss_pred --cC---CCCCH---------HHHHHCCCcEEEecCCCCCcCHH-----------------HHHHHHHHHHHHHhccccc
Confidence 11 12554 45889999999999953321110 11222222212211
Q ss_pred ---cCCCCHHHHHHHHchhhhcC
Q 014320 407 ---SGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 407 ---~~~l~l~~~v~~~t~npA~~ 426 (427)
...+++.++++++|.|+|+.
T Consensus 341 ~~~~~~~~~~~~l~~~T~~gA~a 363 (418)
T cd01313 341 LATAGGSSARALLDAALAGGAQA 363 (418)
T ss_pred ccccCCCCHHHHHHHHHHHHHHH
Confidence 23799999999999999974
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >COG3964 Predicted amidohydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.7e-24 Score=187.78 Aligned_cols=291 Identities=17% Similarity=0.195 Sum_probs=180.6
Q ss_pred CCccEEEECcEEEcCCC--ceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHH
Q 014320 51 SSSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFF 128 (427)
Q Consensus 51 ~~~~~~i~~~~i~~~~~--~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~ 128 (427)
|+.|++++|++++++.. ....+|+|.||||++++ ..+.+.++++||++|++|.||+||.|+|.+.. +.....+-
T Consensus 2 mqfdiLLt~~rlidpa~g~d~~tniai~ngkIaa~~-d~~apa~tq~Ida~Gc~VspG~iDlHvHvy~g--gt~~~v~p- 77 (386)
T COG3964 2 MQFDILLTGGRLIDPARGIDEITNIAIINGKIAAAD-DYPAPAETQIIDADGCIVSPGLIDLHVHVYYG--GTEGGVRP- 77 (386)
T ss_pred CccceeeeCCeecccccccCccceeeeecCeEEecc-CcCCChhheEEccCccEeccCeeeeeeEEecC--CCccCcCH-
Confidence 57899999999998765 34678999999999999 55666778999999999999999999999876 33221111
Q ss_pred HHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHh---ccccceeceeccccC-----CChhhHHHHHHHHHHc--CCC
Q 014320 129 SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKA---KNSCMDYGFHMAITK-----WDEVVSDEMEVMVKEK--GIN 198 (427)
Q Consensus 129 ~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~--g~~ 198 (427)
...+...||||++|.+..+..+.....+...+.. ...++++++.+-... ...-..+++.+..+++ -+.
T Consensus 78 --d~~ga~~GvTTvVDAGSaGaanf~gF~r~vie~Sr~RI~Aflnvs~~Gl~a~nE~~d~~nid~d~i~aa~reh~d~iv 155 (386)
T COG3964 78 --DMYGAPNGVTTVVDAGSAGAANFDGFYRTVIEASRVRIKAFLNVSPPGLTASNELYDPDNIDEDKIHAAFREHRDVIV 155 (386)
T ss_pred --HHccccCCceEEEecCCcCccchhhHHHHhhcchhheeeeeeeccCcceeeehhhCChhhCCHHHHHHHHHhCcCcEE
Confidence 3457899999999998665443333333333332 124555544322111 0111234555555332 245
Q ss_pred eEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChh-hHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHH
Q 014320 199 SFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGD-AVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIR 277 (427)
Q Consensus 199 ~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~-~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~ 277 (427)
++|+-++.+......-.-+....+.|+..++|+++|..++. ...+..++|.
T Consensus 156 GlKvR~s~~~~g~~GitPl~la~~ia~~~klPlmvHigePp~~~dEvlerL~---------------------------- 207 (386)
T COG3964 156 GLKVRVSTEDIGEYGITPLTLALRIANDLKLPLMVHIGEPPVLMDEVLERLR---------------------------- 207 (386)
T ss_pred EEEEEeeeccccccCCchHHHHHHHHhhcCCceEEecCCCCccHHHHHHhcc----------------------------
Confidence 78887765433333334466777888899999999984443 2233332221
Q ss_pred HHHhcCCCEEEEcCCC----------HHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcc
Q 014320 278 LAEFVNTPLYVVHVMS----------MDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASG 347 (427)
Q Consensus 278 ~~~~~g~~~~i~H~~~----------~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~ 347 (427)
.-+ .+.|+.. ..-...+++++++|+..-....- +. .
T Consensus 208 ---~GD---IitHcfngkpn~~l~~dg~vr~~vrra~erGV~fD~ghG~------------------as----------f 253 (386)
T COG3964 208 ---RGD---IITHCFNGKPNTILTDDGVVRAEVRRARERGVIFDAGHGR------------------AS----------F 253 (386)
T ss_pred ---CCc---eeeeeccCCCCCccccchhHHHHHHHHHhcceEEEccCCc------------------ce----------e
Confidence 111 2555532 22345678888888544321110 11 1
Q ss_pred cHHHHHHHHhcCC-ceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 348 HNKALQAALATGI-LQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 348 ~~~~l~~~l~~G~-~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
+....+.++..|. +++|+||=..++. +.+-.+.++..++++..- +++++++++.+|.|||..
T Consensus 254 sf~vAr~aia~GllP~~ISSDlh~~~~----------------~n~Pv~dla~~mSKllal-gmpl~~Vi~avT~npA~~ 316 (386)
T COG3964 254 SFNVARRAIANGLLPDIISSDLHTITK----------------LNGPVYDLAWIMSKLLAL-GMPLTDVINAVTHNPAVL 316 (386)
T ss_pred eHHHHHHHHhcCCCcceeeccceeeee----------------cCchHHHHHHHHHHHHHc-CCcHHHHHHHHhcCHHHH
Confidence 2233456777887 5899999433321 122344566666665543 599999999999999974
|
|
| >PRK09356 imidazolonepropionase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=207.18 Aligned_cols=295 Identities=20% Similarity=0.174 Sum_probs=172.9
Q ss_pred CCccEEEECcEEEcCCC--------ceeeeEEEeCCeEEEeeCCCCCC--CCceEEeCCCCEEeccccccccccccCcCC
Q 014320 51 SSSKILIKGGTVVNAHH--------QQIADVYVEDGIVVAVQPNINVG--DDVKVLDATGKFVMPGGIDPHTHLAMEFMG 120 (427)
Q Consensus 51 ~~~~~~i~~~~i~~~~~--------~~~~~i~i~~g~I~~vg~~~~~~--~~~~viD~~g~~v~PG~ID~H~H~~~~~~g 120 (427)
||.+++|+|++|++++. .++++|+|+||||++||+..+.+ .+.++||++|++|||||||+|+|+.++...
T Consensus 1 ~~~~~li~~~~v~~~~~~~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~~~~~~~iD~~g~~v~PG~id~H~Hl~~~~~~ 80 (406)
T PRK09356 1 MMADLLWTNAQLATMDGGGMGELGIIEDGAIAIEDGKIVWVGPEADLPAAYAAEVIDAGGKLVTPGLIDCHTHLVFGGNR 80 (406)
T ss_pred CCceEEEECCEEEecCCCCccccccccCcEEEEECCEEEEEeCccccccccCceEEECCCCEEeeceEecCCCcccCCCc
Confidence 46779999999998653 34789999999999999865432 235899999999999999999999764110
Q ss_pred C-------------------------------CChhhHH----HHHHHHHcCCceEEecCcCCCCC--cHHHHHHHHHHH
Q 014320 121 S-------------------------------ETIDDFF----SGQAAALAGGTTMHIDFVIPING--SLTAGFEAYEKK 163 (427)
Q Consensus 121 ~-------------------------------~~~e~~~----~~~~~~l~~GvTtv~d~~~~~~~--~~~~~~~~~~~~ 163 (427)
. .++++++ .....++++||||+.++...... ...+.++..+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~ 160 (406)
T PRK09356 81 ANEFELRLQGVSYEEIAAQGGGILSTVRATRAASEEELFAQALPRLDALLAEGVTTVEIKSGYGLDLETELKMLRVARRL 160 (406)
T ss_pred HHHHHHHHCCCcHHHHHHhcCChHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCHHHHHHHHHHHHHH
Confidence 0 0112221 12345689999999986422211 122334444444
Q ss_pred hccccceec--eec--ccc-C---CChhhHHH----HHHHHHH-cCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCc
Q 014320 164 AKNSCMDYG--FHM--AIT-K---WDEVVSDE----MEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGAL 230 (427)
Q Consensus 164 ~~~~~~~~~--~~~--~~~-~---~~~~~~~~----~~~l~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~ 230 (427)
+.+..+.+. +.. ... . ..++.++. +.+.... .++..++.+.. ...++++.++++++.|+++|++
T Consensus 161 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~l~~~~~~A~~~g~~ 237 (406)
T PRK09356 161 GEEHPVDVVTTFLGAHAVPPEYKGRPDAYIDLVCEEMLPAVAEEGLADAVDVFCE---TGAFSVEQSERVLEAAKALGLP 237 (406)
T ss_pred hhhCCCceEeeeeecccCCccccCCHHHHHHHHHHHHhHHHHhcCCcceEEEEec---CCCCCHHHHHHHHHHHHHCCCC
Confidence 433211111 100 000 0 01111222 2211112 23556665433 2346899999999999999999
Q ss_pred EEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCE
Q 014320 231 AMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRV 310 (427)
Q Consensus 231 v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v 310 (427)
+++|+........ .+. ....+ ...+.|+...+. +.++++++.|+.+
T Consensus 238 v~~H~~~~~~~~~-~~~-------------------------------~~~~~-~~~~~H~~~~~~-~~~~~la~~g~~~ 283 (406)
T PRK09356 238 VKIHAEQLSNLGG-AEL-------------------------------AAEYG-ALSADHLEYLDE-AGIAAMAEAGTVA 283 (406)
T ss_pred EEEEEecccCCCH-HHH-------------------------------HHHcC-CcEehHhhcCCH-HHHHHHHHhCCEE
Confidence 9999843211100 001 11112 234667766554 5678888888765
Q ss_pred EEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCC-ChhhhhcCCCCCccCCCC
Q 014320 311 IGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAF-NSTQKAFGIDDFRKIPNG 389 (427)
Q Consensus 311 ~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~-~~~~~~~~~~~~~~~~~G 389 (427)
+ .||...+... . ...+| +.++++.|+++++|||+.|. ++..
T Consensus 284 ~--~~P~~~~~l~-----------~--~~~~~---------~~~l~~~Gi~v~lgtD~~~~~~~~~-------------- 325 (406)
T PRK09356 284 V--LLPGAFYFLR-----------E--TQYPP---------ARLLRDAGVPVALATDFNPGSSPTE-------------- 325 (406)
T ss_pred E--ECccchhhcC-----------c--ccCch---------HHHHHHCCCeEEEeCCCCCCCChhH--------------
Confidence 5 4775432110 0 01133 45578899999999998552 2110
Q ss_pred CchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 390 VNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 390 ~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
.+...+...+...++++.++++++|.|||+.
T Consensus 326 ------~~~~~~~~~~~~~~l~~~~~l~~~T~~~A~~ 356 (406)
T PRK09356 326 ------SLLLAMNMACTLFRLTPEEALAAVTINAARA 356 (406)
T ss_pred ------HHHHHHHHHhhhcCCCHHHHHHHHHHHHHHH
Confidence 1222221223346799999999999999974
|
|
| >cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.7e-24 Score=207.05 Aligned_cols=294 Identities=14% Similarity=0.023 Sum_probs=175.6
Q ss_pred CeEEEeeCCCCC---CCCceEEeCCCCEEeccccccccccccCcC-CC-------------------CChhhHH----HH
Q 014320 78 GIVVAVQPNINV---GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS-------------------ETIDDFF----SG 130 (427)
Q Consensus 78 g~I~~vg~~~~~---~~~~~viD~~g~~v~PG~ID~H~H~~~~~~-g~-------------------~~~e~~~----~~ 130 (427)
|+|++||+..+. .++.+++|+.|++|+|||||+|+|+.+... +. .++++.+ .+
T Consensus 1 ~~I~aVG~~~~~~~~~~~~~v~d~~g~~v~PGlVnaH~H~~~~~~rg~~~~~~~~~wl~~~~~~~~~~~~e~~~~~a~~~ 80 (381)
T cd01312 1 DKILEVGDYEKLEKRYPGAKHEFFPNGVLLPGLINAHTHLEFSANVAQFTYGRFRAWLLSVINSRDELLKQPWEEAIRQG 80 (381)
T ss_pred CeEEEECChHHHHhhcCCCeEEecCCcEEecCccccccccchhccccccCCCchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 699999985332 134689999999999999999999976522 11 1122222 23
Q ss_pred HHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceeccccC-CChhhHHHHHHHHHH--cCCCeEEEEEecC
Q 014320 131 QAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITK-WDEVVSDEMEVMVKE--KGINSFKFFMAYK 207 (427)
Q Consensus 131 ~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~--~g~~~ik~~~~~~ 207 (427)
..+++++||||+.|+... .+.+++..+.+.|..+.+.+...... ..+...+.++...++ ...+.++..++++
T Consensus 81 ~~E~l~~G~Tt~~d~~~~-----~~~~~a~~~~GiR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~p~ 155 (381)
T cd01312 81 IRQMLESGTTSIGAISSD-----GSLLPALASSGLRGVFFNEVIGSNPSAIDFKGETFLERFKRSKSFESQLFIPAISPH 155 (381)
T ss_pred HHHHHHhCCeEEEEecCC-----HHHHHHHHHcCCcEEEEEeeECCCCchhhhhHHHHHHHHHHhhccCccceEEEECCC
Confidence 345689999999998632 22566677777776555443321111 111111111222111 1234578888999
Q ss_pred CCccCCHHHHHHHHHHHHHcCCcEEEec-CChhhHHHHHHH-------HHHcCCCCcccccccCCHHHHHHHHHHHHHHH
Q 014320 208 GSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKR-------MIELGITGPEGHALSRPPLLEGEATTRAIRLA 279 (427)
Q Consensus 208 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~~-------l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~ 279 (427)
.+..++++.++++.+.|+++|+++++|+ |+..+...+.+. ++..+... .......+ + +.++..
T Consensus 156 a~~~~s~e~l~~~~~lA~~~g~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~~~~~~--~~~~g~~p------v-~~l~~~ 226 (381)
T cd01312 156 APYSVHPELAQDLIDLAKKLNLPLSTHFLESKEEREWLEESKGWFKHFWESFLKLP--KPKKLATA------I-DFLDML 226 (381)
T ss_pred CCcccCHHHHHHHHHHHHHcCCeEEEEecCcHHHHHHHHHhccchhhHhhhhcccc--cccCCCCH------H-HHHHHc
Confidence 9999999999999999999999999996 887776554321 11111000 00000001 1 112222
Q ss_pred HhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcC
Q 014320 280 EFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATG 359 (427)
Q Consensus 280 ~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G 359 (427)
...+.++.+.|+...+. +.++.+++.|+.|+. ||.... ..+.. .+| +.++++.|
T Consensus 227 g~L~~~~~~~H~~~l~~-~~~~~l~~~g~~v~~--~P~sn~-----------~lg~g---~~p---------~~~~~~~G 280 (381)
T cd01312 227 GGLGTRVSFVHCVYANL-EEAEILASRGASIAL--CPRSNR-----------LLNGG---KLD---------VSELKKAG 280 (381)
T ss_pred CCCCCCcEEEECCcCCH-HHHHHHHHcCCeEEE--Ccchhh-----------hhcCC---CcC---------HHHHHHCC
Confidence 33456788999988764 678889999987775 774211 11111 144 45699999
Q ss_pred CceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 360 ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 360 ~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
+.+++|||+.+.+...+.+ .+.++...+... ....+++.++++++|.|+|+.
T Consensus 281 v~v~lGtD~~~~~~~~d~~--------------~~~~~~~~~~~~-~~~~~~~~~~l~~aT~~gA~a 332 (381)
T cd01312 281 IPVSLGTDGLSSNISLSLL--------------DELRALLDLHPE-EDLLELASELLLMATLGGARA 332 (381)
T ss_pred CcEEEeCCCCccCCCCCHH--------------HHHHHHHHhccc-ccccCCHHHHHHHHHHHHHHH
Confidence 9999999974432221111 122222211100 111368899999999999974
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >PRK07213 chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-23 Score=202.26 Aligned_cols=288 Identities=19% Similarity=0.244 Sum_probs=174.2
Q ss_pred EEEECcEEEcCCC--ceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCC------------
Q 014320 55 ILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG------------ 120 (427)
Q Consensus 55 ~~i~~~~i~~~~~--~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g------------ 120 (427)
++|+|++|+++.. ..+++|+|+||+|++|++.. ++.++||++|++| |||||+|+|+.+....
T Consensus 2 ~li~~~~v~~~~~~~~~~~~v~i~~g~I~~i~~~~---~~~~~id~~g~~v-PGlvd~H~H~~~~~~rg~~~~~~l~~~~ 77 (375)
T PRK07213 2 LVYLNGNFLYGEDFEPKKGNLVIEDGIIKGFTNEV---HEGNVIDAKGLVI-PPLINAHTHIGDSSIKDIGIGKSLDELV 77 (375)
T ss_pred EEEEeeEEEeCCCCceeeeEEEEECCEEEEeccCC---CCCeEEeCCCCEe-cceeeeccccCchhhhcCCCCCCHHHHc
Confidence 5899999999765 46788999999999998752 3458999999999 9999999999874210
Q ss_pred ------------CCChhhHHH----HHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceeccc-cCCChh
Q 014320 121 ------------SETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAI-TKWDEV 183 (427)
Q Consensus 121 ------------~~~~e~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 183 (427)
..++++.+. .+..++++||||+.|+.... ...++...+......+...+.... ....++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~D~~~~~----~~~~~~~~~a~~~~~~r~~~~~~~~~~~~~~ 153 (375)
T PRK07213 78 KPPNGLKHKFLNSCSDKELVEGMKEGLYDMYNNGIKAFCDFREGG----IKGINLLKKASSDLPIKPIILGRPTEADENE 153 (375)
T ss_pred cCCCcchHHHHhcCCHHHHHHHHHHHHHHHHHcCCeEEEEhhhcC----hhHHHHHHHHHHcCCCceEEecCCCcccchh
Confidence 012233322 34556899999999974221 111222222211111111111111 011222
Q ss_pred hHHHHHHHHHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-CChhhHHHHHHHHHHcCCCCccccccc
Q 014320 184 VSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITGPEGHALS 262 (427)
Q Consensus 184 ~~~~~~~l~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~~l~~~G~~~~~~~~~~ 262 (427)
..+.+++..+. ..+ ++.++...+++++++++++.|+++|+++++|+ |...+.....+ ..|..
T Consensus 154 ~~~~~~~~~~~--~~g----~~~~~~~~~s~~~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~---~~G~~-------- 216 (375)
T PRK07213 154 LKKEIREILKN--SDG----IGLSGANEYSDEELKFICKECKREKKIFSIHAAEHKGSVEYSLE---KYGMT-------- 216 (375)
T ss_pred hHHHHHHHHHh--ccc----ccccccccCCHHHHHHHHHHHHHcCCEEEEeeCCchhHHHHHHH---HcCCC--------
Confidence 33334443321 222 23455567889999999999999999999997 66655433321 22221
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCC-EEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcC
Q 014320 263 RPPLLEGEATTRAIRLAEFVNTP-LYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSP 341 (427)
Q Consensus 263 ~p~~~e~~a~~~~~~~~~~~g~~-~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~p 341 (427)
.+ +.+.+.|+. ..+.|+...+. +.++.++++|+.++. ||...+.. +.. .+
T Consensus 217 --------~v----~~~~~~G~~~~~i~H~~~~~~-~~i~~la~~g~~v~~--~P~sn~~l-----------~~g---~~ 267 (375)
T PRK07213 217 --------EI----ERLINLGFKPDFIVHATHPSN-DDLELLKENNIPVVV--CPRANASF-----------NVG---LP 267 (375)
T ss_pred --------hH----HHHHhcCCCCCEEEECCCCCH-HHHHHHHHcCCcEEE--CCcchhhh-----------ccC---Cc
Confidence 11 222223332 13789887664 668899999988776 76522111 011 24
Q ss_pred CCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHch
Q 014320 342 PIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTST 421 (427)
Q Consensus 342 plr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~ 421 (427)
| +.++++.|+.+++|||+.+++. .+.. .+.++. ....++++.++++++|.
T Consensus 268 ~---------v~~l~~~Gv~v~lGTD~~~~~~-~~~~--------------~e~~~~------~~~~~~~~~~~l~~aT~ 317 (375)
T PRK07213 268 P---------LNEMLEKGILLGIGTDNFMANS-PSIF--------------REMEFI------YKLYHIEPKEILKMATI 317 (375)
T ss_pred c---------HHHHHHCCCEEEEeeCCCCCch-HhHH--------------HHHHHH------HHHhCcCHHHHHHHHHH
Confidence 4 5669999999999999855421 1110 122221 12236999999999999
Q ss_pred hhhcC
Q 014320 422 EWGRL 426 (427)
Q Consensus 422 npA~~ 426 (427)
|+|+.
T Consensus 318 ~gA~~ 322 (375)
T PRK07213 318 NGAKI 322 (375)
T ss_pred HHHHH
Confidence 99984
|
|
| >PRK05985 cytosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-23 Score=202.79 Aligned_cols=298 Identities=17% Similarity=0.144 Sum_probs=172.8
Q ss_pred ccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCC----------
Q 014320 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSE---------- 122 (427)
Q Consensus 53 ~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~---------- 122 (427)
.+++|+|++|+++. ..+|+|+||+|++|++....+++.++||++|++|+|||||+|+|+.....+..
T Consensus 2 ~~~~i~~~~i~~~~---~~~v~i~~g~i~~i~~~~~~~~~~~~id~~g~~v~Pg~iD~h~h~~~~~~~~~~~~~~~~~~~ 78 (391)
T PRK05985 2 TDLLFRNVRPAGGA---AVDILIRDGRIAAIGPALAAPPGAEVEDGGGALALPGLVDGHIHLDKTFWGDPWYPNEPGPSL 78 (391)
T ss_pred CCEEEECcEECCCC---eeEEEEECCEEEEecCCCCCCCCCcEEECCCCEEecceEeeEEccCccccCCccccCCCCCCH
Confidence 46799999999975 56999999999999986543345679999999999999999999965321110
Q ss_pred -------------ChhhH----HHHHHHHHcCCceEEecCcCCCCC----cHHHHHHHHHHHhccccceeceeccccC-C
Q 014320 123 -------------TIDDF----FSGQAAALAGGTTMHIDFVIPING----SLTAGFEAYEKKAKNSCMDYGFHMAITK-W 180 (427)
Q Consensus 123 -------------~~e~~----~~~~~~~l~~GvTtv~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 180 (427)
+.+++ ....+.++++|+|+++|+....+. .....++..+....+..+.+........ .
T Consensus 79 ~~~i~~~~~~~~~~~~~~~~~a~~~~~~~l~~G~t~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~ 158 (391)
T PRK05985 79 RERIANERRRRAASGHPAAERALALARAAAAAGTTAMRSHVDVDPDAGLRHLEAVLAARETLRGLIDIQIVAFPQSGVLS 158 (391)
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHHhcCcceEEeeEccCCCcccchHHHHHHHHHHhhCcccEEEEeccCccccC
Confidence 00011 123456799999999987643221 2222223222211122222211111001 1
Q ss_pred ChhhHHHHHHHHHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-CChhhHHHHHHHHHHcCCCCcccc
Q 014320 181 DEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITGPEGH 259 (427)
Q Consensus 181 ~~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~~l~~~G~~~~~~~ 259 (427)
.....+.+++.. +.|++.+ ..+.++....++++.+.++++.|+++|+++++|+ +..+...
T Consensus 159 ~~~~~~ll~~~l-~~g~~~~-gg~~p~~~~~~~~~~l~~~~~~A~~~g~~i~~Hv~e~~d~~~----------------- 219 (391)
T PRK05985 159 RPGTAELLDAAL-RAGADVV-GGLDPAGIDGDPEGQLDIVFGLAERHGVGIDIHLHEPGELGA----------------- 219 (391)
T ss_pred CcCHHHHHHHHH-HcCCCEE-eCCCCCCcCCCHHHHHHHHHHHHHHhCCCcEEeeCCCCCccH-----------------
Confidence 111234455555 5565433 2234455566788999999999999999999996 4332111
Q ss_pred cccCCHHHHHHHHHHHHHHHHhcCC--CEEEEcCCCHH------HHHHHHHHhhcCCCEEEecCccceeeCcccccCCCc
Q 014320 260 ALSRPPLLEGEATTRAIRLAEFVNT--PLYVVHVMSMD------AMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDF 331 (427)
Q Consensus 260 ~~~~p~~~e~~a~~~~~~~~~~~g~--~~~i~H~~~~~------~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~ 331 (427)
..+.+.++...+.|. ++.+.|+.... ..+.++++++.|+.|+.+ +.. .
T Consensus 220 ----------~~~~~~~e~~~~~g~~~~~~i~H~~~l~~~~~~~~~~~i~~lae~g~~v~~~--~~~----~-------- 275 (391)
T PRK05985 220 ----------FQLERIAARTRALGMQGRVAVSHAFCLGDLPEREVDRLAERLAEAGVAIMTN--APG----S-------- 275 (391)
T ss_pred ----------HHHHHHHHHHHHhCCCCCEehhhhhhhhcCCHHHHHHHHHHHHHcCCeEEEe--CCC----C--------
Confidence 111222333333343 47888886431 125688889999887653 210 0
Q ss_pred ccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCC--CChhhhhcCCCCCccCCCCCchhh-HhHHHHHHHHHhcC
Q 014320 332 VTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCA--FNSTQKAFGIDDFRKIPNGVNGIE-ERMHLVWDTMVESG 408 (427)
Q Consensus 332 ~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p--~~~~~~~~~~~~~~~~~~G~~~~e-~~l~~~~~~~~~~~ 408 (427)
.. .+| +.++++.|+.+++|||+.. +++.. ....++ .++.... ... ..
T Consensus 276 ---~~---~~~---------~~~l~~~Gv~v~lGtD~~~~~~~p~~-------------~~~~~~~~~~~~~~-~~~-~~ 325 (391)
T PRK05985 276 ---VP---VPP---------VAALRAAGVTVFGGNDGIRDTWWPYG-------------NGDMLERAMLIGYR-SGF-RT 325 (391)
T ss_pred ---CC---CCC---------HHHHHHCCCeEEEecCCCCCCCcCCC-------------CCcHHHHHHHHHHH-Hcc-CC
Confidence 01 133 4569999999999999742 11110 001111 1111111 111 11
Q ss_pred CCCHHHHHHHHchhhhcC
Q 014320 409 QISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 409 ~l~l~~~v~~~t~npA~~ 426 (427)
.-++.++++++|.|||+.
T Consensus 326 ~~~~~~al~~~T~~~A~~ 343 (391)
T PRK05985 326 DDELAAALDCVTHGGARA 343 (391)
T ss_pred hHHHHHHHHHHcchhHHH
Confidence 234679999999999984
|
|
| >TIGR01178 ade adenine deaminase | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-23 Score=207.18 Aligned_cols=174 Identities=20% Similarity=0.290 Sum_probs=127.7
Q ss_pred cEEEECcEEEcCCC--ceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHHHH
Q 014320 54 KILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131 (427)
Q Consensus 54 ~~~i~~~~i~~~~~--~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~ 131 (427)
|++|+|++|+++.. ...++|+|+||||++|++.. +.++||++|++|+|||||+|+|+..+ +. +++.+ .
T Consensus 1 dlli~n~~ivd~~~~~~~~~dI~I~~g~I~~ig~~~----~~~viDa~G~~v~PG~ID~H~Hi~~~--~~-~~~~~---~ 70 (552)
T TIGR01178 1 DIVIKNAKIIDVYNGEIIPGDIAIANGHIAGVGKYN----GVKVIDALGEYAVPGFIDAHIHIESS--ML-TPSEF---A 70 (552)
T ss_pred CEEEEeeEEEeCCCCcEEeeeEEEECCEEEEecCCC----CCeEEECCCCEEEeCeEecccccCCC--CC-ChhHH---H
Confidence 47899999998554 45679999999999998642 35899999999999999999999876 32 44555 4
Q ss_pred HHHHcCCceEEecCcCCC-CCcHHHHHHHHHHHhccccceeceecccc------CCChh--hHHHHHHHHHHcCCCeEEE
Q 014320 132 AAALAGGTTMHIDFVIPI-NGSLTAGFEAYEKKAKNSCMDYGFHMAIT------KWDEV--VSDEMEVMVKEKGINSFKF 202 (427)
Q Consensus 132 ~~~l~~GvTtv~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~--~~~~~~~l~~~~g~~~ik~ 202 (427)
+.++.+||||++++.... +....+.++.+.+...+.++++.+..+.. ..+.. ..++++++.++.|+.++|.
T Consensus 71 ~~al~~GvTtvv~~P~~~~~v~g~~~~~~~~~~a~~~~~d~~~~~~s~vp~~~~e~~g~~~~~~~i~~~~~~~~V~glke 150 (552)
T TIGR01178 71 KLVLPHGVTTVVSDPHEIANVNGEDGINFMLNNAKKTPLNFYFMLPSCVPALQFETSGAVLTAEDIDELMELDEVLGLAE 150 (552)
T ss_pred HHHHCCCEEEEEcCCCCCCCCCCHHHHHHHHHHhhcCCcEEEEECCCCCCCCcccCCCCccCHHHHHHHHcCCCccEEEE
Confidence 678999999999875432 22456777777776666777764433211 11111 3567888885679999999
Q ss_pred EEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCCh
Q 014320 203 FMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG 238 (427)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~ 238 (427)
+|++.+....+++.++.+ +.+++.|+.+.+|++..
T Consensus 151 ~m~~~~v~~~d~~~l~~i-~~a~~~g~~I~gHap~l 185 (552)
T TIGR01178 151 VMDYPGVINADIEMLNKI-NSARKRNKVIDGHCPGL 185 (552)
T ss_pred EecchhhcCCCHHHHHHH-HHHHhCCCEEEecCCCC
Confidence 998865444445555544 78999999999999754
|
The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected. |
| >PRK13206 ureC urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-23 Score=204.38 Aligned_cols=205 Identities=18% Similarity=0.207 Sum_probs=146.4
Q ss_pred CccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCC------------CCCceEEeCCCCEEeccccccccccccCcC
Q 014320 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~------------~~~~~viD~~g~~v~PG~ID~H~H~~~~~~ 119 (427)
..|++|+|++|++..+...++|.|+||||++|++.... ..++++||++|++|+|||||+|+|+..+
T Consensus 70 ~~DlVI~Na~IiD~~gi~~adI~IkDGrIvaIG~~~~p~~~~gv~~~~~ig~~tevIDaeG~iV~PG~ID~HVH~~~P-- 147 (573)
T PRK13206 70 APDTVITGAVILDHWGIVKADVGIRDGRIVAIGKAGNPDIMDGVHPDLVIGPSTEIIAGNGRILTAGAIDCHVHFICP-- 147 (573)
T ss_pred CCCEEEECeEEECCCCeEEEEEEEECCEEEEEeCCCCccccccccccccCCCCCEEEECCCCEEEeCEEeeeeccCCc--
Confidence 46899999999997777778999999999999974211 1346899999999999999999998765
Q ss_pred CCCChhhHHHHHHHHHcCCceEEecCcCCC-----CC---cHHHHHHHHHHHhccccceeceeccccCCChhhHHHHHHH
Q 014320 120 GSETIDDFFSGQAAALAGGTTMHIDFVIPI-----NG---SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM 191 (427)
Q Consensus 120 g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 191 (427)
+. .++++++||||+++++..+ .. ...-.++.+.+......+++++++... ....+++.++
T Consensus 148 g~---------~~aALagGVTTvi~~G~gP~~~t~~~t~t~g~~~l~~~~~aa~~~pvn~g~~g~g~---~~~~~~L~el 215 (573)
T PRK13206 148 QI---------VDEALAAGITTLIGGGTGPAEGSKATTVTPGAWHLARMLEALDGWPVNVALLGKGN---TVSAEALWEQ 215 (573)
T ss_pred hH---------HHHHHcCCeEEEEcCCCCccccCcccccccchhHHHHHHHHhhcCceeEEEecCcC---cCCHHHHHHH
Confidence 21 3789999999999974221 11 111123344444445778888876432 2224567777
Q ss_pred HHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHH
Q 014320 192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEA 271 (427)
Q Consensus 192 ~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a 271 (427)
. +.|+.+||++.++ ..+++.+.++++.|+++|+++.+|+++..+. |+
T Consensus 216 ~-~aGA~GfKi~~d~----g~t~~~i~~aL~~A~~~gv~V~iHadtlne~----------g~------------------ 262 (573)
T PRK13206 216 L-RGGAGGFKLHEDW----GSTPAAIDACLRVADAAGVQVALHSDTLNEA----------GF------------------ 262 (573)
T ss_pred H-HCCCcEEeecCcc----CCCHHHHHHHHHHHHHhCCEEEEECCCcccc----------ch------------------
Confidence 7 7899999998654 3789999999999999999999999875433 11
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCH---HHHHHHHHHhh
Q 014320 272 TTRAIRLAEFVNTPLYVVHVMSM---DAMEEIAKARK 305 (427)
Q Consensus 272 ~~~~~~~~~~~g~~~~i~H~~~~---~~~~~i~~~~~ 305 (427)
.+. .++...|..+|++|.... ..-++|+.+..
T Consensus 263 -~E~-t~aa~~gr~iH~~H~egaggghapd~~~~~~~ 297 (573)
T PRK13206 263 -VED-TLAAIAGRSIHAYHTEGAGGGHAPDIITVASH 297 (573)
T ss_pred -hhH-HHHHhcCCeEEEEeccCCCcCcccHHHHhcCC
Confidence 111 334457888999999753 22345555443
|
|
| >TIGR02022 hutF formiminoglutamate deiminase | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-23 Score=205.73 Aligned_cols=304 Identities=15% Similarity=0.052 Sum_probs=178.2
Q ss_pred EEEECcEEEcCCCceeeeEEEe-CCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcC-C------------
Q 014320 55 ILIKGGTVVNAHHQQIADVYVE-DGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G------------ 120 (427)
Q Consensus 55 ~~i~~~~i~~~~~~~~~~i~i~-~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~-g------------ 120 (427)
..++|+.+-++ -.++.+|+|+ ||||++||+....++. .+..|++|||||||+|+|+.+.+. |
T Consensus 4 ~~~~~~~~~~~-~~~~~~i~I~~~g~I~~vg~~~~~~~~---~~~~g~lvlPGfVn~H~H~~~~~~rg~~~~~~~~~~~l 79 (455)
T TIGR02022 4 YWAERALLPDG-WAEGVRIAVAADGRILAIETGVPAAPG---AERLSGPLLPGLANLHSHAFQRAMAGLAEVAGSGGDSF 79 (455)
T ss_pred hhHHhccCCCc-cccCceEEEecCCEEEEecCCCCcccc---cccCCCEEccCCcccCcchhhHhhcCCcccccCCCCCH
Confidence 34566666322 2357899999 9999999986432222 234689999999999999976421 1
Q ss_pred ------------CCChhhHHH----HHHHHHcCCceEEecCcCCCC-------C----cHHHHHHHHHHHhccccceece
Q 014320 121 ------------SETIDDFFS----GQAAALAGGTTMHIDFVIPIN-------G----SLTAGFEAYEKKAKNSCMDYGF 173 (427)
Q Consensus 121 ------------~~~~e~~~~----~~~~~l~~GvTtv~d~~~~~~-------~----~~~~~~~~~~~~~~~~~~~~~~ 173 (427)
..++++++. +...++++||||+.|+..... . .....++...+.+.|..+...+
T Consensus 80 ~~w~~~~~~~~~~~t~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~~e~G~R~~~~~~~ 159 (455)
T TIGR02022 80 WTWRELMYRFVDRLTPEQLQAIARQLYVEMLEAGFTRVGEFHYLHHAPDGTPYADPAEMAERIAAAAADAGIGLTLLPVF 159 (455)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCEEEeeeeecccCCCccccchhhhHHHHHHHHHHhCCeEEeeeee
Confidence 012233332 334569999999999742111 0 1245566677776664333221
Q ss_pred ec-----cccC---------CChhhHHHHHHHHHH-cCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-CC
Q 014320 174 HM-----AITK---------WDEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-EN 237 (427)
Q Consensus 174 ~~-----~~~~---------~~~~~~~~~~~l~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e~ 237 (427)
.. +... ..++..+..+.+.+. .+...+.+.+.+++++.++++.++++.+ ++++|+++++|+ |+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~s~e~l~~~~~-a~~~g~~v~~H~~e~ 238 (455)
T TIGR02022 160 YAHSGFGGAAPNPGQRRFIHDVERFARLVEVLRRELAAQPAAVLGLAPHSLRAVTPEQLAAVLQ-ASDRQAPVHIHVAEQ 238 (455)
T ss_pred eecCCCCCCCCcccchhhccCHHHHHHHHHHHHHHhccCCceEEEEecCCCCcCCHHHHHHHHH-HHhCCCceEEEECCC
Confidence 10 0100 001122222333211 1223466677888888899999999999 889999999997 66
Q ss_pred hhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCcc
Q 014320 238 GDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVS 317 (427)
Q Consensus 238 ~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~ 317 (427)
..++..+.+ ..|.. | + +.+......+.++.+.|+...+. +.++.+++.|+.|+. ||.
T Consensus 239 ~~e~~~~~~---~~G~~---------~-------v-~~l~~~g~l~~~~~~~H~~~l~~-~d~~~la~~g~~v~~--~P~ 295 (455)
T TIGR02022 239 QKEVDDCLA---WSGRR---------P-------V-EWLLDHGPVDARWCLVHATHLTD-EETALLARSGAVAGL--CPT 295 (455)
T ss_pred hHHHHHHHH---HhCCC---------H-------H-HHHHHcCCCCCCEEEEEeecCCH-HHHHHHHHcCCeEEE--Chh
Confidence 655544332 22321 0 0 01111112345677888877654 668888999987776 776
Q ss_pred ceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhH
Q 014320 318 GLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERM 397 (427)
Q Consensus 318 ~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l 397 (427)
.... .|.. .+| ++++++.|+.+++|||..+..... .+.++
T Consensus 296 sn~~-----------lg~g---~~p---------i~~l~~~Gv~v~lGTD~~~~~d~~-----------------~~m~~ 335 (455)
T TIGR02022 296 TEAN-----------LGDG---IFP---------AVDFVAAGGRFGIGSDSHVVIDVA-----------------EELRQ 335 (455)
T ss_pred hhcc-----------ccCC---CCC---------HHHHHHCCCeEEEECCCCCCCCHH-----------------HHHHH
Confidence 3211 1111 245 456999999999999964321111 12233
Q ss_pred HHHHHHHHh---------cCCCCHHHHHHHHchhhhcC
Q 014320 398 HLVWDTMVE---------SGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 398 ~~~~~~~~~---------~~~l~l~~~v~~~t~npA~~ 426 (427)
..++.+... ...++.+++++++|.|+||.
T Consensus 336 a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gAra 373 (455)
T TIGR02022 336 LEYGQRLRDRARNVLAAGPGPSVGRALYDAALLGGAQA 373 (455)
T ss_pred HHHHHHHHhcccccccCCcccchHHHHHHHHHHHHHHH
Confidence 322222111 12567889999999999974
|
In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate. |
| >PRK07572 cytosine deaminase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-22 Score=199.31 Aligned_cols=264 Identities=18% Similarity=0.178 Sum_probs=158.2
Q ss_pred cEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcC-CC-----------
Q 014320 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS----------- 121 (427)
Q Consensus 54 ~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~-g~----------- 121 (427)
+++|+|++|+++. ...+|+|+||+|++|++..+. ...++||++|++|+|||||+|+|+...+. +.
T Consensus 3 ~~~i~~~~i~~~~--~~~~i~i~~g~I~~v~~~~~~-~~~~~id~~g~~~~PG~id~h~h~~~~~~~~~~~~~~~g~l~e 79 (426)
T PRK07572 3 DLIVRNANLPDGR--TGIDIGIAGGRIAAVEPGLQA-EAAEEIDAAGRLVSPPFVDPHFHMDATLSYGLPRVNASGTLLE 79 (426)
T ss_pred cEEEECeEECCCC--eeEEEEEECCEEEEecCCCCC-CcCceEeCCCCEEcccceehhhCcchhhccCCCCCCCCCCHHH
Confidence 5789999999865 356899999999999975432 34579999999999999999999976421 11
Q ss_pred -----------CChhhHHH----HHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhc--cccceeceec-cc--cCCC
Q 014320 122 -----------ETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK--NSCMDYGFHM-AI--TKWD 181 (427)
Q Consensus 122 -----------~~~e~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~--~~~~ 181 (427)
.++++++. ..+.++++|||+++|+....... ...++...+... ...++..... .. ....
T Consensus 80 ~l~~~~~~~~~~t~edl~~~a~~~~~e~l~~G~Ttvrd~~d~~~~~-~~~~~a~~~~~~~~~~~~~~~~~a~~~~g~~~~ 158 (426)
T PRK07572 80 GIALWGELKPLLTQEALVERALRYCDWAVARGLLAIRSHVDVCDPR-LLAVEALLEVRERVAPYLDLQLVAFPQDGVLRS 158 (426)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCcccEeeccccCCCc-ccHHHHHHHHHHHhhccceEEEEeccChhhccC
Confidence 23344332 34567999999999974321111 122222222211 1222211110 00 0011
Q ss_pred hhhHHHHHHHHHHcCCCeEEEEEecCCCccCC--HHHHHHHHHHHHHcCCcEEEec-CChhhHHHHHH----HHHHcCCC
Q 014320 182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMIN--DELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQK----RMIELGIT 254 (427)
Q Consensus 182 ~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~~--~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~----~l~~~G~~ 254 (427)
++..+.+++.+ +.|++.+.. .++....++ .+.++.++++|+++|+++++|+ ++...+....+ ++.+.|+
T Consensus 159 ~~~~~~~~~~l-~~g~d~iGg--~p~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~G~- 234 (426)
T PRK07572 159 PGAVDNLERAL-DMGVDVVGG--IPHFERTMADGAESVRLLCEIAAERGLRVDMHCDESDDPLSRHIETLAAETQRLGL- 234 (426)
T ss_pred ccHHHHHHHHH-HcCCCEEeC--CCCCccccchHHHHHHHHHHHHHHcCCCeEEEECCCCChhHHHHHHHHHHHHHhCC-
Confidence 23445667776 577776632 122222333 4899999999999999999998 66655433221 1222222
Q ss_pred CcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHH------HHHHHHHHhhcCCCEEEecCccceeeCcccccC
Q 014320 255 GPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMD------AMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWH 328 (427)
Q Consensus 255 ~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~------~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~ 328 (427)
.+ ++.+.|+.... ..+.++.++++|+.|++ ||...+.....
T Consensus 235 ---------------------------~~-~v~~~H~~~l~~~~~~~~~~~~~~la~~g~~vv~--~P~~n~~l~~~--- 281 (426)
T PRK07572 235 ---------------------------QG-RVAGSHLTSMHSMDNYYVSKLIPLMAEAGVNAIA--NPLINITLQGR--- 281 (426)
T ss_pred ---------------------------CC-CEEEEccchhhcCCHHHHHHHHHHHHHcCCeEEE--CchhhhhhcCC---
Confidence 12 57788886432 24678889999988876 66432211000
Q ss_pred CCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCC
Q 014320 329 SDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHC 369 (427)
Q Consensus 329 ~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~ 369 (427)
....|.-+ ....+.++++.|+.+++|||+.
T Consensus 282 --------~~~~~~~~---g~~~v~~l~~~GV~v~lGtD~~ 311 (426)
T PRK07572 282 --------HDTYPKRR---GMTRVPELMAAGINVAFGHDCV 311 (426)
T ss_pred --------CCCCCCCC---CCcCHHHHHHCCCcEEEecCCC
Confidence 00001101 1233678999999999999974
|
|
| >PRK13207 ureC urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-22 Score=197.95 Aligned_cols=208 Identities=19% Similarity=0.198 Sum_probs=147.4
Q ss_pred CccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCC----------CCCceEEeCCCCEEeccccccccccccCcCCC
Q 014320 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV----------GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS 121 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~----------~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~ 121 (427)
..|++|+|++|+++.+...++|.|+||||++|++.... ..+.++||++|++|+|||||+|+|+..+ +.
T Consensus 66 ~mDlVI~Na~Vvd~~gi~~adI~I~dGrI~~IG~~~~p~~~~~v~~~~~~~~eVIDa~G~iV~PG~ID~HvH~~~P--~~ 143 (568)
T PRK13207 66 AVDTVITNALILDHWGIVKADIGIKDGRIVAIGKAGNPDIQDGVDIIIGPGTEVIAGEGLIVTAGGIDTHIHFICP--QQ 143 (568)
T ss_pred cCCEEEECeEEECCCCeEEEEEEEECCEEEEEeCCCCccccccccccCCCCCeEEECCCCEEEeCeEECccCCccc--cH
Confidence 46899999999998666789999999999999974211 1356899999999999999999998765 21
Q ss_pred CChhhHHHHHHHHHcCCceEEecCcCCCC----C----cHHHHHHHHHHHhccccceeceeccccCCChhhHHHHHHHHH
Q 014320 122 ETIDDFFSGQAAALAGGTTMHIDFVIPIN----G----SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVK 193 (427)
Q Consensus 122 ~~~e~~~~~~~~~l~~GvTtv~d~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (427)
.++++++||||+++++..+. . .....++.+.+......++++++... ..+..+++++++
T Consensus 144 ---------~~aALagGVTTVi~mg~gP~~gt~~~t~tpG~~~l~~~l~~a~~~pin~g~~g~g---~~~~~~~L~e~i- 210 (568)
T PRK13207 144 ---------IEEALASGVTTMIGGGTGPATGTNATTCTPGPWHIHRMLQAADAFPMNIGFLGKG---NASLPEALEEQI- 210 (568)
T ss_pred ---------HHHHHcCCCCEEEcCCcCCccCCcccccccchHHHHHHHHHhhcCCceEEEEcCC---CcccHHHHHHHH-
Confidence 47789999999999843221 1 11223444444434456677766422 223466777777
Q ss_pred HcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHH
Q 014320 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATT 273 (427)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~ 273 (427)
+.|+.+||++.++. .+++.+.++++.|+++|+++.+|+++..+.... +
T Consensus 211 ~aGA~gfKi~~d~g----~t~~~l~~aL~~A~~~gv~V~iHa~tlne~G~~----------------------------e 258 (568)
T PRK13207 211 EAGAIGLKLHEDWG----ATPAAIDNCLSVADEYDVQVAIHTDTLNESGFV----------------------------E 258 (568)
T ss_pred HcCCCEEeecCCCC----CCHHHHHHHHHHHHHhCCEEEEeCCCcccchHH----------------------------H
Confidence 78999999987653 588999999999999999999999764322111 1
Q ss_pred HHHHHHHhcCCCEEEEcCCC---HHHHHHHHHHhhcCC
Q 014320 274 RAIRLAEFVNTPLYVVHVMS---MDAMEEIAKARKAGQ 308 (427)
Q Consensus 274 ~~~~~~~~~g~~~~i~H~~~---~~~~~~i~~~~~~G~ 308 (427)
. .++...|..+|++|... ...-+.++.+.+.++
T Consensus 259 -~-t~~a~~g~~iH~~H~egaggghapdii~~~~~~~v 294 (568)
T PRK13207 259 -D-TIAAFKGRTIHTFHTEGAGGGHAPDIIKVAGEPNV 294 (568)
T ss_pred -H-HHHhcCCCEEEEEeecCCCcCCchHHHHHhhcCCC
Confidence 1 23334567799999763 122356777776664
|
|
| >PRK13308 ureC urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=199.05 Aligned_cols=169 Identities=18% Similarity=0.176 Sum_probs=128.4
Q ss_pred CccEEEECcEEEcCC-CceeeeEEEeCCeEEEeeCCCCC------------CCCceEEeCCCCEEeccccccccccccCc
Q 014320 52 SSKILIKGGTVVNAH-HQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGGIDPHTHLAMEF 118 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~-~~~~~~i~i~~g~I~~vg~~~~~------------~~~~~viD~~g~~v~PG~ID~H~H~~~~~ 118 (427)
..|++|+|++|+++. +...++|.|+||||++|++.... ..++++||++|++|+|||||+|+|+..+
T Consensus 67 ~~DlVItNa~IIDp~~Gi~kaDIgIkDGrIaaIG~~~npd~~~gv~p~~~~g~~teVIDaeG~IVtPG~ID~HVH~~~P- 145 (569)
T PRK13308 67 ALDFVLCNVTVIDPVLGIVKGDIGIRDGRIVGIGKAGNPDIMDGVDPRLVVGPGTDVRPAEGLIATPGAIDVHVHFDSA- 145 (569)
T ss_pred cCCEEEECeEEEcCCCCeEEeEEEEECCEEEEecCCCCccccccccccccCCCCCeEEECCCCEEEeCEEEeeeCCCCc-
Confidence 468999999999864 46678999999999999975311 1356899999999999999999999765
Q ss_pred CCCCChhhHHHHHHHHHcCCceEEecCcCCC----CCcHHHHHHHHHHHhccccceeceeccccCCChhhHHHHHHHHHH
Q 014320 119 MGSETIDDFFSGQAAALAGGTTMHIDFVIPI----NGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKE 194 (427)
Q Consensus 119 ~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (427)
+. .++++++||||+++++..+ .......++.+.+......+++++++... ....+++.+++ +
T Consensus 146 -g~---------~~aALagGVTTVi~gg~gPt~p~~t~g~~~i~~~l~aa~~~pvN~g~~gkG~---~s~~aeL~eli-~ 211 (569)
T PRK13308 146 -QL---------VDHALASGITTMLGGGLGPTVGIDSGGPFNTGRMLQAAEAWPVNFGFLGRGN---SSKPAALIEQV-E 211 (569)
T ss_pred -cH---------HHHHHcCCCcEEecCCcCCCCCCCCCCHHHHHHHHHHHhcCCccEEEEcCCc---ccCHHHHHHHH-H
Confidence 21 3789999999999864221 11334455555555555678888775422 12356778777 7
Q ss_pred cCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChh
Q 014320 195 KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGD 239 (427)
Q Consensus 195 ~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~ 239 (427)
.|+.+||++.++. .+++.+.++++.|+++|+++.+|++...
T Consensus 212 aGA~GfKi~ed~g----~t~~~i~~aL~~A~~~dv~VaiHadtln 252 (569)
T PRK13308 212 AGACGLKIHEDWG----AMPAAIDTCLEVADEYDFQVQLHTDTLN 252 (569)
T ss_pred CCCCEEeecCCCC----CCHHHHHHHHHHHHhcCCEEEEeCCCcC
Confidence 8999999886652 4789999999999999999999997643
|
|
| >PRK09230 cytosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.2e-22 Score=195.63 Aligned_cols=311 Identities=18% Similarity=0.183 Sum_probs=175.1
Q ss_pred ccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCC-CCceEEeCCCCEEeccccccccccccCcCCC----------
Q 014320 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVG-DDVKVLDATGKFVMPGGIDPHTHLAMEFMGS---------- 121 (427)
Q Consensus 53 ~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~-~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~---------- 121 (427)
..++|+|++|+++.. ..+|+|+||+|++|++..+.. ++.++||++|++|||||||+|+|+...+...
T Consensus 4 ~~~li~~~~~~~~~~--~~~i~i~~g~I~~i~~~~~~~~~~~~~id~~g~~v~PGlid~H~H~~~~~~~~~~~~~~~~~l 81 (426)
T PRK09230 4 ALMTIKNARLPGKEG--LWQITIEDGKISAIEPQSEASLEAGEVLDAEGGLAIPPFIEPHIHLDTTQTAGEPNWNQSGTL 81 (426)
T ss_pred ceEEEECcEEcCCCe--eEEEEEECCEEEEecCCCCCCCCCCceEeCCCCEeccceeEEEEccccceecCCCccCCCCCH
Confidence 568999999988543 368999999999999864322 3568999999999999999999998752211
Q ss_pred -------------CChhhHH----HHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhc--cccceeceec--c--cc
Q 014320 122 -------------ETIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK--NSCMDYGFHM--A--IT 178 (427)
Q Consensus 122 -------------~~~e~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~--~~ 178 (427)
.++++++ .....++++|||++.++..+... ....++...+... +...+.++.. . ..
T Consensus 82 ~~~i~~~~~~~~~~t~ed~~~~a~~~~~e~l~~GvTtvr~~~d~~~~-~~~~~~a~~~~~~~~~~~~~~~i~a~~~~~~~ 160 (426)
T PRK09230 82 FEGIERWAERKALLTHEDVKQRAWQTLKWQIANGIQHVRTHVDVSDP-TLTALKAMLEVKEEVAPWVDLQIVAFPQEGIL 160 (426)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCcccEEeccccCCc-chhHHHHHHHHHHHhhCcceEEEEeccCcccc
Confidence 1223332 23455699999999998654222 1122222221111 1122222211 1 01
Q ss_pred CCChhhHHHHHHHHHHcCCCeEEEEEecCCCccC--CHHHHHHHHHHHHHcCCcEEEec-CChhhHHHHHHHHHHcCCCC
Q 014320 179 KWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI--NDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITG 255 (427)
Q Consensus 179 ~~~~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~--~~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~~l~~~G~~~ 255 (427)
. .+...+.+++.. +.+.+.+ ...++..... +++.++.+++.|+++|+++++|+ |.........
T Consensus 161 ~-~~~~~~~l~~a~-~~~~~~v--g~~p~~~~~~~~~~e~l~~~~~~A~~~g~~~~~H~~E~~~~~~~~~---------- 226 (426)
T PRK09230 161 S-YPNGEALLEEAL-RLGADVV--GAIPHFEFTREYGVESLHKAFALAQKYDRLIDVHCDEIDDEQSRFV---------- 226 (426)
T ss_pred C-CccHHHHHHHHH-HcCCCEE--eCCCCccccchhHHHHHHHHHHHHHHhCCCcEEEECCCCCcchHHH----------
Confidence 1 112223334433 3444422 2223333333 57899999999999999999997 5543322111
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHh--cCCCEEEEcCCCHH------HHHHHHHHhhcCCCEEEecCccceeeCccccc
Q 014320 256 PEGHALSRPPLLEGEATTRAIRLAEF--VNTPLYVVHVMSMD------AMEEIAKARKAGQRVIGEPVVSGLVLDDSWLW 327 (427)
Q Consensus 256 ~~~~~~~~p~~~e~~a~~~~~~~~~~--~g~~~~i~H~~~~~------~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~ 327 (427)
...+++... .+.++.+.|+.... .-+.++.+++.|+.|++ ||...+......
T Consensus 227 -----------------~~~~~~~~~~gl~~~v~~~H~~~l~~~~~~~~~~~~~~La~~gv~vv~--cP~sn~~l~~~~- 286 (426)
T PRK09230 227 -----------------ETVAALAHREGMGARVTASHTTAMHSYNGAYTSRLFRLLKMSGINFVA--NPLVNIHLQGRF- 286 (426)
T ss_pred -----------------HHHHHHHHHhCCCCCEEEEecCchhcCCHHHHHHHHHHHHHcCCeEEE--CcchhhhhcCCC-
Confidence 111222222 24578899988762 34688999999988776 776432111100
Q ss_pred CCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhc
Q 014320 328 HSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVES 407 (427)
Q Consensus 328 ~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~ 407 (427)
.. .|.+. ....+.++++.|+.++||||+. .+. | .+.|...+-..+.... ...+.
T Consensus 287 ----------~~-~p~~~--g~~pi~~l~~aGv~V~lGTD~~-~d~---------~--~~~~~~d~~~~~~~~~-~~~~~ 340 (426)
T PRK09230 287 ----------DT-YPKRR--GITRVKEMLEAGINVCFGHDDV-FDP---------W--YPLGTANMLQVLHMGL-HVCQL 340 (426)
T ss_pred ----------CC-CCCCC--CCcCHHHHHHCCCeEEEecCCC-CCC---------C--cCCCCCCHHHHHHHHH-HHHhh
Confidence 00 11100 1122667999999999999963 211 1 1222222211111111 01111
Q ss_pred CCC-CHHHHHHHHchhhhcC
Q 014320 408 GQI-SVTDYVRLTSTEWGRL 426 (427)
Q Consensus 408 ~~l-~l~~~v~~~t~npA~~ 426 (427)
... ++.++++++|.||||.
T Consensus 341 ~~~~~~~~~l~maT~~gA~a 360 (426)
T PRK09230 341 MGYGQINDGLNLITTHSART 360 (426)
T ss_pred CChhhHHHHHHHHhcchhHH
Confidence 112 3689999999999984
|
|
| >PRK09229 N-formimino-L-glutamate deiminase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.5e-23 Score=205.55 Aligned_cols=304 Identities=13% Similarity=0.047 Sum_probs=180.6
Q ss_pred cEEEECcEEEcCCCceeeeEEEeC-CeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcC-C-----------
Q 014320 54 KILIKGGTVVNAHHQQIADVYVED-GIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G----------- 120 (427)
Q Consensus 54 ~~~i~~~~i~~~~~~~~~~i~i~~-g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~-g----------- 120 (427)
.++++++.+.++ ...+++|+|+| |||++||+... ++ .++.+|++|||||||+|+|+.+.+. |
T Consensus 4 ~~~~~~~~~~~~-~~~~~~v~i~~~grI~~vg~~~~-~~---~~~~~g~~vlPGlVn~H~H~~~~~~rg~~~~~~~~~~~ 78 (456)
T PRK09229 4 TLFAERALLPDG-WARNVRLTVDADGRIAAVEPGAA-PA---GAERLAGPVLPGMPNLHSHAFQRAMAGLTEVRGPPQDS 78 (456)
T ss_pred hHHHHHhhCCCc-cccCcEEEEecCCeEEEecCCCC-Cc---cccccCcEEccCcccccccHhhHhhcCcccccCCCCCC
Confidence 345556655333 24678999999 99999998543 22 2456899999999999999875411 1
Q ss_pred -------------CCChhhHH----HHHHHHHcCCceEEecCcCCCCC-----------cHHHHHHHHHHHhccccceec
Q 014320 121 -------------SETIDDFF----SGQAAALAGGTTMHIDFVIPING-----------SLTAGFEAYEKKAKNSCMDYG 172 (427)
Q Consensus 121 -------------~~~~e~~~----~~~~~~l~~GvTtv~d~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 172 (427)
..++++.+ .++..++++||||+.|+...... .....++..++.+.|..+...
T Consensus 79 l~~w~~~~~~~~~~~~~e~~~~~a~~~~~e~L~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~~e~GiR~~~~~~ 158 (456)
T PRK09229 79 FWSWRELMYRFALRLTPDQLEAIARQLYVEMLEAGYTSVGEFHYLHHDPDGTPYADPAEMALRIVAAARAAGIGLTLLPV 158 (456)
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCcEEEeeeeeccCCCCCccCChHHHHHHHHHHHHHcCCEEEecee
Confidence 01122222 23345699999999997522110 124456666676666433221
Q ss_pred eec--cc---cC---------CChhhHHHHHHHHHH-cCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-C
Q 014320 173 FHM--AI---TK---------WDEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-E 236 (427)
Q Consensus 173 ~~~--~~---~~---------~~~~~~~~~~~l~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e 236 (427)
... +. .. ..++..+..+++.+. .+...+.+.+.+++...++++.++++++.| ++|+++++|+ |
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~s~e~l~~~~~~A-~~g~~i~~H~~e 237 (456)
T PRK09229 159 LYAHSGFGGQPPNPGQRRFINDPDGFLRLLEALRRALAALPGARLGLAPHSLRAVTPDQLAAVLALA-APDGPVHIHIAE 237 (456)
T ss_pred eeecCCCCCCCCchhhcccccCHHHHHHHHHHHHHhhcCCCceEEEEeCCCCCCCCHHHHHHHHHHh-cCCCceEEEeCC
Confidence 110 00 00 011122223333321 223457778888888889999999999999 9999999998 6
Q ss_pred ChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCc
Q 014320 237 NGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVV 316 (427)
Q Consensus 237 ~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p 316 (427)
+..++..+.+ ..|.. | ++ .+......+.++.+.|+...+. +.++++++.|+.+++ ||
T Consensus 238 ~~~e~~~~~~---~~g~~---------~-------~~-~l~~~g~l~~~~~l~H~~~l~~-~d~~~la~~g~~v~~--~P 294 (456)
T PRK09229 238 QTKEVDDCLA---WSGAR---------P-------VE-WLLDHAPVDARWCLVHATHLTD-AETARLARSGAVAGL--CP 294 (456)
T ss_pred CHHHHHHHHH---HcCCC---------H-------HH-HHHHcCCCCCCeEEEeeccCCH-HHHHHHHHcCCeEEE--Cc
Confidence 6655544432 22321 1 01 1111223456778899887765 668888999987765 77
Q ss_pred cceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHh
Q 014320 317 SGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEER 396 (427)
Q Consensus 317 ~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~ 396 (427)
.... ..|. ..+| ++++++.|+.+.+|||..+...... +.+
T Consensus 295 ~sn~-----------~lg~---g~~p---------~~~l~~~Gv~v~lGtD~~~~~d~~~-----------------~~~ 334 (456)
T PRK09229 295 TTEA-----------NLGD---GIFP---------AVDYLAAGGRFGIGSDSHVSIDLVE-----------------ELR 334 (456)
T ss_pred hhhh-----------hhcC---CCCC---------HHHHHHCCCeEEEecCCCCCCCHHH-----------------HHH
Confidence 5321 1111 1244 4568999999999999633211111 122
Q ss_pred HHHHHHHHHh---------cCCCCHHHHHHHHchhhhcC
Q 014320 397 MHLVWDTMVE---------SGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 397 l~~~~~~~~~---------~~~l~l~~~v~~~t~npA~~ 426 (427)
+.....+... ...++..++++++|.|+|+.
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gA~a 373 (456)
T PRK09229 335 LLEYGQRLRDRRRNVLAAAAQPSVGRRLFDAALAGGAQA 373 (456)
T ss_pred HHHHHHHHhhcCCcccccccccchHHHHHHHHHHHHHHH
Confidence 2222211111 13678999999999999974
|
|
| >cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=196.58 Aligned_cols=273 Identities=21% Similarity=0.191 Sum_probs=162.3
Q ss_pred EEEeCCeEEEeeCCCCCC----CCceEEeCCCCEEeccccccccccccCcC----------CC-----------------
Q 014320 73 VYVEDGIVVAVQPNINVG----DDVKVLDATGKFVMPGGIDPHTHLAMEFM----------GS----------------- 121 (427)
Q Consensus 73 i~i~~g~I~~vg~~~~~~----~~~~viD~~g~~v~PG~ID~H~H~~~~~~----------g~----------------- 121 (427)
|+|+||||++||+....+ .+.++||++|++|+|||||+|+|+.+... +.
T Consensus 1 i~i~~g~I~~ig~~~~~~~~~~~~~~~iD~~G~~v~Pg~vn~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (371)
T cd01296 1 IAIRDGRIAAVGPAASLPAPGPAAAEEIDAGGRAVTPGLVDCHTHLVFAGDRVDEFAARLAGASYEEILAAGGGILSTVR 80 (371)
T ss_pred CEEECCEEEEEeCchhcccccCCCceEEECCCCEEecceeecCCCCcCCCCcHHHHHHHHCCCCHHHHHHcCCChHHHHH
Confidence 679999999999864432 35689999999999999999999976421 10
Q ss_pred ----CChhhHHH----HHHHHHcCCceEEecCcCCCCC--cHHHHHHHHHHHhccccceec--eec--cccC-C--Chhh
Q 014320 122 ----ETIDDFFS----GQAAALAGGTTMHIDFVIPING--SLTAGFEAYEKKAKNSCMDYG--FHM--AITK-W--DEVV 184 (427)
Q Consensus 122 ----~~~e~~~~----~~~~~l~~GvTtv~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~-~--~~~~ 184 (427)
.++++++. ....++++|||++.+....... ...+.++..++.+.+..+.+. +.. .... . .++.
T Consensus 81 ~~~~~~~~d~~~~a~~~~~~~~~~Gvt~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~ 160 (371)
T cd01296 81 ATRAASEDELFASALRRLARMLRHGTTTVEVKSGYGLDLETELKMLRVIRRLKEEGPVDLVSTFLGAHAVPPEYKGREEY 160 (371)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHCCceEEEecccCCCCHHHHHHHHHHHHHHHhhCCCceEeeeeecccCCcccCChHHH
Confidence 12233322 3456799999999984211111 233345555555443222221 110 1110 0 1111
Q ss_pred HHH-HHHHHH----HcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccc
Q 014320 185 SDE-MEVMVK----EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGH 259 (427)
Q Consensus 185 ~~~-~~~l~~----~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~ 259 (427)
.+. ..++.+ ..++..++++... ...+.+.++++++.|+++|+++++|+.......
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~A~~~g~~v~~H~~e~~~~~----------------- 220 (371)
T cd01296 161 IDLVIEEVLPAVAEENLADFCDVFCEK---GAFSLEQSRRILEAAKEAGLPVKIHADELSNIG----------------- 220 (371)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEeecC---CccCHHHHHHHHHHHHHCCCeEEEEEcCcCCCC-----------------
Confidence 111 122221 2456777775432 235688999999999999999999985432110
Q ss_pred cccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEE
Q 014320 260 ALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVM 339 (427)
Q Consensus 260 ~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~ 339 (427)
.+ +.+...+. ..+.|+...+. +.++++++.|+.+.. ||...+... ..
T Consensus 221 -----------~~----~~~~~~g~-~~i~H~~~~~~-~~i~~la~~g~~v~~--~P~~~~~l~-----------~~--- 267 (371)
T cd01296 221 -----------GA----ELAAELGA-LSADHLEHTSD-EGIAALAEAGTVAVL--LPGTAFSLR-----------ET--- 267 (371)
T ss_pred -----------HH----HHHHHcCC-CeeHHhcCCCH-HHHHHHHHcCCeEEE--ChHHHHHhC-----------CC---
Confidence 00 11112232 33677765543 778889999987765 665332110 11
Q ss_pred cCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHH
Q 014320 340 SPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLT 419 (427)
Q Consensus 340 ~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~ 419 (427)
.+| ++++++.|+++++|||+.|+.... ..++..+...+...+++++++++++
T Consensus 268 ~~~---------~~~l~~~Gv~v~lgsD~~p~~~~~-------------------~~l~~~~~~~~~~~~l~~~~al~~a 319 (371)
T cd01296 268 YPP---------ARKLIDAGVPVALGTDFNPGSSPT-------------------SSMPLVMHLACRLMRMTPEEALTAA 319 (371)
T ss_pred CCC---------HHHHHHCCCcEEEecCCCCCCChH-------------------HHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 344 456899999999999986643211 1122233233445689999999999
Q ss_pred chhhhcC
Q 014320 420 STEWGRL 426 (427)
Q Consensus 420 t~npA~~ 426 (427)
|.|||++
T Consensus 320 T~~~A~~ 326 (371)
T cd01296 320 TINAAAA 326 (371)
T ss_pred HHHHHHH
Confidence 9999984
|
In bacteria, the enzyme is part of histidine utilization (hut) operon. |
| >PRK13309 ureC urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.9e-22 Score=195.77 Aligned_cols=169 Identities=18% Similarity=0.178 Sum_probs=125.9
Q ss_pred CccEEEECcEEEcCC-CceeeeEEEeCCeEEEeeCCCCC------------CCCceEEeCCCCEEeccccccccccccCc
Q 014320 52 SSKILIKGGTVVNAH-HQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGGIDPHTHLAMEF 118 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~-~~~~~~i~i~~g~I~~vg~~~~~------------~~~~~viD~~g~~v~PG~ID~H~H~~~~~ 118 (427)
..|++|+|++|+|+. +...++|.|+||||++||+.... ..++++||++|++|+|||||+|+|+..+
T Consensus 67 ~~DlVI~Ng~ViD~~~gi~kaDI~IkdGrI~aIG~~~~p~~~~~v~~~~~~g~~tevIDa~G~iVtPG~ID~HvH~~~P- 145 (572)
T PRK13309 67 VLDLVITNVTIVDARLGVIKADVGIRDGKIVGIGKSGNPSTMDGVTQGMVVGVSTDAISGEHLILTAAGIDTHIHLISP- 145 (572)
T ss_pred cCCEEEECeEEEcCCCCEEEEEEEEECCEEEEecCCCccccccccccccccCCCceEEECCCCEEEeCEEEeecccCCc-
Confidence 468999999999953 46688999999999999874321 1236899999999999999999998776
Q ss_pred CCCCChhhHHHHHHHHHcCCceEEecCcCCC----C----CcHHHHHHHHHHHhccccceeceeccccCCChhhHHHHHH
Q 014320 119 MGSETIDDFFSGQAAALAGGTTMHIDFVIPI----N----GSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEV 190 (427)
Q Consensus 119 ~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (427)
+. .++++.+||||+++++..+ + ......++.+.+......+++++++.. .. ....++.+
T Consensus 146 -~~---------~~aAl~gGVTTvi~~G~gp~~~~n~~~~t~g~~~i~~~l~~a~~~pvn~g~~gkg--~~-~~~~~l~e 212 (572)
T PRK13309 146 -QQ---------AYHALSNGVTTFFGGGIGPTDGTNGTTVTPGPWNIRQMLRSIEGLPVNVGILGKG--NS-YGRGPLLE 212 (572)
T ss_pred -ch---------HHHHHcCceEEEEecCCCCccCCCCCCCCCCHHHHHHHHHHhccCCcCEEEEcCC--CC-CCHHHHHH
Confidence 21 3579999999999753111 1 123445666655555566788776532 11 22356677
Q ss_pred HHHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChh
Q 014320 191 MVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGD 239 (427)
Q Consensus 191 l~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~ 239 (427)
++ +.|+.+||++.++. .+++.+.++++.|+++|.++.+|+++-.
T Consensus 213 l~-~aGa~gfk~~~d~g----~t~~~L~~aLe~A~~~gv~VaiH~d~ln 256 (572)
T PRK13309 213 QA-IAGVAGYKVHEDWG----ATAAALRHALRVADEVDIQVAVHTDSLN 256 (572)
T ss_pred HH-hcCcEEEEecCcCC----cCHHHHHHHHHHHHhcCCEEEEeCCccc
Confidence 66 78999999876553 4889999999999999999999987653
|
|
| >PRK07583 cytosine deaminase-like protein; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-21 Score=195.40 Aligned_cols=308 Identities=19% Similarity=0.171 Sum_probs=176.2
Q ss_pred ccEEEECcEEEcC------------CCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCC
Q 014320 53 SKILIKGGTVVNA------------HHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG 120 (427)
Q Consensus 53 ~~~~i~~~~i~~~------------~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g 120 (427)
..++|+|+++-+. ++....+|.|+||||++|++....+.+.++||++|++|+|||||+|+|+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~dg~i~~i~~~~~~~~~~~~id~~g~~v~Pg~id~H~Hld~~~~~ 90 (438)
T PRK07583 11 GRYWLKNARVPAALLEGGVPPGDTLEGLVLVDIEIADGKIAAILPAGGAPDELPAVDLKGRMVWPCFVDMHTHLDKGHIW 90 (438)
T ss_pred CcEEEeccccccccccCccCCCcCCCCcEEEEEEEECCEEEEEecCCCCCCCCceecCCCCcccCCcccceeccccceec
Confidence 4478888876321 1234679999999999999875433457899999999999999999998664111
Q ss_pred C-----------------------CChhh----HHHHHHHHHcCCceEEecCcCC-CC--CcHHHHHHHHHHHh-ccc--
Q 014320 121 S-----------------------ETIDD----FFSGQAAALAGGTTMHIDFVIP-IN--GSLTAGFEAYEKKA-KNS-- 167 (427)
Q Consensus 121 ~-----------------------~~~e~----~~~~~~~~l~~GvTtv~d~~~~-~~--~~~~~~~~~~~~~~-~~~-- 167 (427)
. .+.++ +..+.+.++..|+|+++..... .. ....+.+....+.. .+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~Gtt~vRt~vd~~~~~~~~~~~~i~~~~~~~~~~~~~ 170 (438)
T PRK07583 91 PRSPNPDGTFPGALDAVTADREAHWSAEDLYRRMEFGLRCAYAHGTSAIRTHLDSFAPQAAISWEVFAELREAWAGRIAL 170 (438)
T ss_pred CCCCCCCCCHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhChhhEEeeeccCCCCcccHHHHHHHHHHHhhccCeE
Confidence 0 01233 4456677899999966654321 11 11222232222221 111
Q ss_pred --cceeceeccccCCChhhHHHHHHHHHHc-CCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-CChhhHHH
Q 014320 168 --CMDYGFHMAITKWDEVVSDEMEVMVKEK-GINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFE 243 (427)
Q Consensus 168 --~~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~ 243 (427)
...+.+++... ++ .+++.+.+... |+.+.+.++.+ -+++.+.++++.|+++|+++.+|+ |+......
T Consensus 171 ~~v~~~p~~~~~~---~~-~~eL~~~v~~~~gv~g~~~~~~~-----~~d~~l~~i~~lA~~~G~~v~vH~~E~~~~~~~ 241 (438)
T PRK07583 171 QAVSLVPLDAYLT---DA-GERLADLVAEAGGLLGGVTYMNP-----DLDAQLDRLFRLARERGLDLDLHVDETGDPASR 241 (438)
T ss_pred EEEEecChhhccC---ch-HHHHHHHHHHcCCEEeCCCCCCC-----CHHHHHHHHHHHHHHhCCCcEEeECCCCCchHH
Confidence 11122222111 11 24555555333 34343332221 256889999999999999999998 65433221
Q ss_pred HHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcC--CCEEEEcCCCHH------HHHHHHHHhhcCCCEEEecC
Q 014320 244 GQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN--TPLYVVHVMSMD------AMEEIAKARKAGQRVIGEPV 315 (427)
Q Consensus 244 ~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g--~~~~i~H~~~~~------~~~~i~~~~~~G~~v~~~~~ 315 (427)
.. ....+.+.+.| .++.++|+.... ..+.++++++.|+.++. |
T Consensus 242 ~l---------------------------~~~~~~~~~~G~~~~v~i~H~~~l~~~~~~~~~~~i~~la~~gv~vv~--~ 292 (438)
T PRK07583 242 TL---------------------------KAVAEAALRNGFEGKVTCGHCCSLAVQPEEQAQATIALVAEAGIAIVS--L 292 (438)
T ss_pred HH---------------------------HHHHHHHHHhCCCCCEEEEeccchhcCCHHHHHHHHHHHHHcCCeEEE--C
Confidence 11 11122222222 368899987643 13678999999988875 7
Q ss_pred ccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCC-Cchhh
Q 014320 316 VSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNG-VNGIE 394 (427)
Q Consensus 316 p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G-~~~~e 394 (427)
|...+....... ...|+.+. ...+.++++.|+.+++|||+.+- +| . |.| ...++
T Consensus 293 P~~~~~l~~~~~----------~~~p~~~~---~~~v~~l~~aGV~valGtD~~~d----------~~-~-p~g~~~~~~ 347 (438)
T PRK07583 293 PMCNLYLQDRQP----------GRTPRWRG---VTLVHELKAAGIPVAVASDNCRD----------PF-Y-AYGDHDMLE 347 (438)
T ss_pred cchhhhhcCCCc----------CCCCCCCC---cchHHHHHHCCCeEEEEeCCCCC----------CC-C-CCCCcCHHH
Confidence 764332211110 01232322 23466788899999999998531 11 1 222 11222
Q ss_pred HhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 395 ERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 395 ~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
....... . .....++.++++++|.|||++
T Consensus 348 ~~~~a~~--~-~~~~~~~~~al~~~T~~~A~~ 376 (438)
T PRK07583 348 VFREAVR--I-LHLDHPYDDWPAAVTTTPADI 376 (438)
T ss_pred HHHHHHH--H-HhcCCcHHHHHHHHhHHHHHH
Confidence 2222211 1 123578999999999999984
|
|
| >PRK09237 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.8e-22 Score=193.09 Aligned_cols=179 Identities=21% Similarity=0.216 Sum_probs=114.8
Q ss_pred EEEECcEEEcCCC--ceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHHHHH
Q 014320 55 ILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA 132 (427)
Q Consensus 55 ~~i~~~~i~~~~~--~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~ 132 (427)
++|+|++|+++.. ....+|+|+||||++|++..+.+.+.++||++|++|+|||||+|+|+... +.. .+. +..+
T Consensus 1 ~~i~~~~v~d~~~~~~~~~~v~i~~g~I~~v~~~~~~~~~~~~iD~~g~~v~PG~iD~H~H~~~~--~~~-~~~--~~~~ 75 (380)
T PRK09237 1 LLLRGGRVIDPANGIDGVIDIAIEDGKIAAVAGDIDGSQAKKVIDLSGLYVSPGWIDLHVHVYPG--STP-YGD--EPDE 75 (380)
T ss_pred CEEEeEEEECCCCCcccceEEEEECCEEEEecCCCCCCCCCeEEECCCCEEecCEEEeeecCCCC--CCc-cCC--CHHH
Confidence 3799999998764 35689999999999998764433356899999999999999999999854 211 111 3467
Q ss_pred HHHcCCceEEecCcCCCCCcHHHHHHHHHHH-hc--cccceeceeccccC-C----ChhhHHHHHHHHHH--cCCCeEEE
Q 014320 133 AALAGGTTMHIDFVIPINGSLTAGFEAYEKK-AK--NSCMDYGFHMAITK-W----DEVVSDEMEVMVKE--KGINSFKF 202 (427)
Q Consensus 133 ~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~-~----~~~~~~~~~~l~~~--~g~~~ik~ 202 (427)
.++.+||||++|+............+...+. +. ..++++...+.... . .....++++++..+ .++.++|.
T Consensus 76 ~~~~~G~Ttv~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~glk~ 155 (380)
T PRK09237 76 VGVRSGVTTVVDAGSAGADNFDDFRKLTIEASKTRVLAFLNISRIGLLAQDELADLEDIDADAVAEAVKRNPDFIVGIKA 155 (380)
T ss_pred HHHhCCcCEEEECCCCCCCCHHHHHHHHHhhhCcEEEEEEeeecccccccchhcCHhHCCHHHHHHHHHhCcCcEEEEEE
Confidence 8999999999998754433333333333322 22 23344443332211 1 11234556666642 46889999
Q ss_pred EEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCCh
Q 014320 203 FMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG 238 (427)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~ 238 (427)
++.+........+.++.....+++.|+++.+|+++.
T Consensus 156 ~~~~~v~~~~~~~~~~~~~~~a~~~g~~v~~H~~~~ 191 (380)
T PRK09237 156 RMSSSVVGDNGIEPLELAKAIAAEANLPLMVHIGNP 191 (380)
T ss_pred EEecccccccCCchHHHHHHHHHhcCCCEEEEcCCC
Confidence 987642222111334444455668999999998654
|
|
| >TIGR01224 hutI imidazolonepropionase | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.6e-22 Score=193.26 Aligned_cols=276 Identities=16% Similarity=0.136 Sum_probs=156.7
Q ss_pred eeeeEEEeCCeEEEeeCCCCCCC--CceEEeCCCCEEeccccccccccccCcC----------CC---------------
Q 014320 69 QIADVYVEDGIVVAVQPNINVGD--DVKVLDATGKFVMPGGIDPHTHLAMEFM----------GS--------------- 121 (427)
Q Consensus 69 ~~~~i~i~~g~I~~vg~~~~~~~--~~~viD~~g~~v~PG~ID~H~H~~~~~~----------g~--------------- 121 (427)
++++|+|+||+|++||+....+. +.++||++|++|||||||+|+|+..... +.
T Consensus 2 ~~~~v~i~~g~I~~vg~~~~~~~~~~~~~iD~~g~~v~PGlin~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (377)
T TIGR01224 2 EDAVILIHGGKIVWIGQLAALPGEEATEIIDCGGGLVTPGLVDPHTHLVFAGDRVNEFEMKLQGASYLEILAQGGGILST 81 (377)
T ss_pred CceEEEEECCEEEEEechhhCCcccCCeEEeCCCCEEcccEEecccCccccCCcHHHHHHHhCCCCHHHHHHhcCChHHH
Confidence 46899999999999998533222 5689999999999999999999975311 00
Q ss_pred ------CChhhHHH----HHHHHHcCCceEEecCcCCCCC--cHHHHHHHHHHHhccccceecee-c---ccc----CCC
Q 014320 122 ------ETIDDFFS----GQAAALAGGTTMHIDFVIPING--SLTAGFEAYEKKAKNSCMDYGFH-M---AIT----KWD 181 (427)
Q Consensus 122 ------~~~e~~~~----~~~~~l~~GvTtv~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~---~~~----~~~ 181 (427)
.++++++. ....++++|||++.+....... .....++..++...+..+..... . ... ...
T Consensus 82 ~~~~~~~~~ed~~~~a~~~~~e~l~~Gvt~ve~~~~~g~~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 161 (377)
T TIGR01224 82 VRATRAASEEELLKLALFRLKSMLRSGTTTAEVKSGYGLDLETELKMLRAAKALHEEQPVDVVTTFLGAHAVPPEFQGRP 161 (377)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHCCceEEEecccCCCCHHHHHHHHHHHHHHHhhCCCceEeeeeecccCCccccCCH
Confidence 11222222 2345699999999432111111 12233344444433321222110 0 001 001
Q ss_pred hhhHHHH-HHHHH---Hc-CCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCc
Q 014320 182 EVVSDEM-EVMVK---EK-GINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGP 256 (427)
Q Consensus 182 ~~~~~~~-~~l~~---~~-g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~ 256 (427)
++..+.. +.+++ .. ++..++.+. ++ ...+.+.++++++.|+++|+++++|+........ .+.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~--~~~~~~~~~~~~~~A~~~g~~v~~H~~e~~~~~~-~~~~~------- 230 (377)
T TIGR01224 162 DDYVDGICEELIPQVAEEGLASFADVFC-EA--GVFSVEQSRRILQAAQEAGLPVKLHAEELSNLGG-AELAA------- 230 (377)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCeeEEEe-cC--CCcCHHHHHHHHHHHHHCCCCEEEEecCCCCCCH-HHHHH-------
Confidence 1112111 11221 22 356666543 22 2346789999999999999999999843211100 01111
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCce
Q 014320 257 EGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAK 336 (427)
Q Consensus 257 ~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~ 336 (427)
..| +..+.|+...+. +.++++++.|+.++ .||...+... .
T Consensus 231 ------------------------~~g-~~~~~H~~~~~~-~~l~~la~~g~~~~--~~P~~~~~l~-----------~- 270 (377)
T TIGR01224 231 ------------------------KLG-AVSADHLEHASD-AGIKALAEAGTVAV--LLPGTTFYLR-----------E- 270 (377)
T ss_pred ------------------------HcC-CCccHHHhcCCH-HHHHHHHhcCCEEE--ECchHHHhcC-----------C-
Confidence 112 123556665543 67888889887665 4776432111 0
Q ss_pred eEEcCCCCCcccHHHHHHHHhcCCceEEecCCCC-CChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHH
Q 014320 337 YVMSPPIRASGHNKALQAALATGILQLVGTDHCA-FNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDY 415 (427)
Q Consensus 337 ~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p-~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~ 415 (427)
..+| ++++++.|+.+++|||+.| +++... +...+.......+++++++
T Consensus 271 --~~~p---------~~~l~~~Gv~v~lgTD~~~~~~~~~~--------------------~~~~~~~~~~~~~ls~~ea 319 (377)
T TIGR01224 271 --TYPP---------ARQLIDYGVPVALATDLNPGSSPTLS--------------------MQLIMSLACRLMKMTPEEA 319 (377)
T ss_pred --cCcc---------HHHHHHCCCCEEEECCCCCCCChhHH--------------------HHHHHHHHHHhcCCCHHHH
Confidence 1244 4558889999999999755 332111 1111212233567999999
Q ss_pred HHHHchhhhcC
Q 014320 416 VRLTSTEWGRL 426 (427)
Q Consensus 416 v~~~t~npA~~ 426 (427)
++++|.|||++
T Consensus 320 l~~~T~~~A~~ 330 (377)
T TIGR01224 320 LHAATVNAAYA 330 (377)
T ss_pred HHHHHHHHHHH
Confidence 99999999974
|
This enzyme catalyzes the third step in histidine degradation. |
| >PRK13985 ureB urease subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=191.98 Aligned_cols=205 Identities=17% Similarity=0.201 Sum_probs=144.3
Q ss_pred CccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCC------------CCCceEEeCCCCEEeccccccccccccCcC
Q 014320 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~------------~~~~~viD~~g~~v~PG~ID~H~H~~~~~~ 119 (427)
..|++|+|++|++..+...++|.|+||||++|++.... ..+.++||++|++|+|||||+|+|+..+
T Consensus 64 ~~DlVI~Na~IiD~~gi~kaDI~IkdGrIaaIG~~gn~~~~~~v~~~~~ig~~tevIDa~G~iV~PG~ID~HvH~~~P-- 141 (568)
T PRK13985 64 ELDLIITNALIIDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGGIDTHIHFISP-- 141 (568)
T ss_pred cCCEEEECeEEECCCCcEEEEEEEECCEEEEeecCCCccccccccccccCCCCceEEECCCCEEEeCEEEeeCCCCCc--
Confidence 56899999999997666778999999999999975321 1357899999999999999999998765
Q ss_pred CCCChhhHHHHHHHHHcCCceEEecCcCCC-----CC---cHHHHHHHHHHHhccccceeceeccccCCChhhHHHHHHH
Q 014320 120 GSETIDDFFSGQAAALAGGTTMHIDFVIPI-----NG---SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM 191 (427)
Q Consensus 120 g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 191 (427)
+ . .+.++++||||+++++..+ .. .....++.+.+......+++++++.. .....+++.++
T Consensus 142 ~-----~----~~~AlagGVTTvI~~G~gP~~~T~p~~~tpg~~~i~~ml~~a~~~pvn~gf~gkG---~~~~l~eL~el 209 (568)
T PRK13985 142 Q-----Q----IPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEYSMNLGFLGKG---NSSNDASLADQ 209 (568)
T ss_pred c-----H----HHHHhcCceEEEEccCcCCCCCCCCcCCCCcHHHHHHHHHHhhccCccEEEecCC---ccCCHHHHHHH
Confidence 2 1 2458999999999953211 11 12222444445444556778776532 12335677777
Q ss_pred HHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHH
Q 014320 192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEA 271 (427)
Q Consensus 192 ~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a 271 (427)
. +.|+.++|.+.++ ..++..+.++++.|+++|.++.+|+++..+....
T Consensus 210 ~-~aGA~GfK~~ed~----g~t~~~I~~aL~vA~~~dv~V~iHtdtlne~g~~--------------------------- 257 (568)
T PRK13985 210 I-EAGAIGFKIHEDW----GTTPSAINHALDVADKYDVQVAIHTDTLNEAGCV--------------------------- 257 (568)
T ss_pred H-HcCCEEEEECCcc----CCCHHHHHHHHHHHHHcCCEEEEeCCCCCCchhh---------------------------
Confidence 7 7899999976544 3688999999999999999999999765433111
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCH---HHHHHHHHHhh
Q 014320 272 TTRAIRLAEFVNTPLYVVHVMSM---DAMEEIAKARK 305 (427)
Q Consensus 272 ~~~~~~~~~~~g~~~~i~H~~~~---~~~~~i~~~~~ 305 (427)
+ . .++...|..+|++|+... ..-++++.+..
T Consensus 258 -E-~-t~aa~~gr~iH~~H~egaggghapdi~~~~~~ 291 (568)
T PRK13985 258 -E-D-TMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGE 291 (568)
T ss_pred -H-H-HHHHhcCCeEEEEeccCCCccchhhHHHHcCC
Confidence 1 1 333446788999999763 22345554433
|
|
| >cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.4e-22 Score=193.25 Aligned_cols=193 Identities=18% Similarity=0.202 Sum_probs=144.0
Q ss_pred CccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCC------------CCCceEEeCCCCEEeccccccccccccCcC
Q 014320 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~------------~~~~~viD~~g~~v~PG~ID~H~H~~~~~~ 119 (427)
..+++|+|++|++..+...++|.|+||||++|++.... ..++++||++|++|+|||||+|+|+..+
T Consensus 64 ~~DlVI~Na~IiD~~gi~~adI~IkdGrIvaIG~agnp~~~~~v~~~~~~g~~teVIDaeG~iV~PG~ID~HvH~~~P-- 141 (567)
T cd00375 64 VLDLVITNALIIDYTGIYKADIGIKDGRIVAIGKAGNPDIMDGVTPNMIVGPSTEVIAGEGKIVTAGGIDTHVHFICP-- 141 (567)
T ss_pred cCCEEEECeEEECCCCcEEEEEEEECCEEEEEecCCCccccccccccccCCCCCeEEECCCCEEeeceEECccCCCCc--
Confidence 46899999999997766789999999999999975321 1346899999999999999999998765
Q ss_pred CCCChhhHHHHHHHHHcCCceEEecCcCCC----C---C-cHHHHHHHHHHHhccccceeceeccccCCChhhHHHHHHH
Q 014320 120 GSETIDDFFSGQAAALAGGTTMHIDFVIPI----N---G-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM 191 (427)
Q Consensus 120 g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~----~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 191 (427)
+. .++++++||||+++++..+ + . .....++.+.+......+++++++.. ..+.++++.++
T Consensus 142 ~~---------~~aAlagGVTTvI~~G~gP~~gtnatp~t~g~~~l~~ml~aa~~~pin~g~~gkg---~~~~l~eL~e~ 209 (567)
T cd00375 142 QQ---------IEEALASGITTMIGGGTGPAAGTKATTCTPGPWNIKRMLQAADGLPVNIGFLGKG---NGSSPDALAEQ 209 (567)
T ss_pred cH---------HHHHHcCCCcEEEcCCcCcccccCCCCCCCCHHHHHHHHHHhhcCCceEEEEecC---ccccHHHHHHH
Confidence 21 4689999999999973221 1 1 23455666655555667888876532 23445677777
Q ss_pred HHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHH
Q 014320 192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEA 271 (427)
Q Consensus 192 ~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a 271 (427)
+ +.|+.+||++.++. .++..+.++++.|+++|.++.+|+++..+....
T Consensus 210 ~-~aGA~GfK~~eD~g----~t~~~i~~aL~~A~~~dv~VaiHadtlne~g~~--------------------------- 257 (567)
T cd00375 210 I-EAGACGLKLHEDWG----ATPAAIDTCLSVADEYDVQVAIHTDTLNESGFV--------------------------- 257 (567)
T ss_pred H-HcCCEEEEecCCCC----CCHHHHHHHHHHHHhhCCEEEEECCCCCcchHH---------------------------
Confidence 7 78999999886653 589999999999999999999999765432111
Q ss_pred HHHHHHHHHhcCCCEEEEcCCC
Q 014320 272 TTRAIRLAEFVNTPLYVVHVMS 293 (427)
Q Consensus 272 ~~~~~~~~~~~g~~~~i~H~~~ 293 (427)
+. .++...|..+|++|...
T Consensus 258 --E~-t~aa~~gr~iH~~H~eg 276 (567)
T cd00375 258 --ED-TIAAIKGRTIHTYHTEG 276 (567)
T ss_pred --HH-HHHHhcCCeEEEEecCC
Confidence 11 34556788899999976
|
Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers. |
| >cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=188.38 Aligned_cols=162 Identities=19% Similarity=0.151 Sum_probs=110.5
Q ss_pred eEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCC
Q 014320 72 DVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING 151 (427)
Q Consensus 72 ~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~ 151 (427)
+|+|+||||++|++....+.+.++||++|++|+|||||+|+|+..+ +..+.+ ...++++.+||||++|+......
T Consensus 1 ~i~i~~g~I~~i~~~~~~~~~~~~id~~g~~v~PG~iD~H~H~~~~--g~~~~~---~~~~~a~~~GvTtvvd~~~~~~~ 75 (338)
T cd01307 1 DVAIENGKIAAVGAALAAPAATQIVDAGGCYVSPGWIDLHVHVYQG--GTRYGD---RPDMIGVKSGVTTVVDAGSAGAD 75 (338)
T ss_pred CEEEECCEEEEccCCCCCCCCCeEEECCCCEEecCeEEeeecCCCC--CcccCC---CHhHHHHcCceeEEEeCCCCCCC
Confidence 5899999999999864433447899999999999999999999887 543333 35788999999999999754443
Q ss_pred cHHHHHHHHHHHh-c--cccceeceeccccC--CC---hhhHHHHHHHHH--HcCCCeEEEEEecCCCccCCHHHHHHHH
Q 014320 152 SLTAGFEAYEKKA-K--NSCMDYGFHMAITK--WD---EVVSDEMEVMVK--EKGINSFKFFMAYKGSFMINDELLIEGF 221 (427)
Q Consensus 152 ~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~--~~---~~~~~~~~~l~~--~~g~~~ik~~~~~~~~~~~~~~~l~~~~ 221 (427)
.....++...+.. . .+++++++++.... .. ....+.+.+..+ ..|+.++|.++..++........++..+
T Consensus 76 ~~~~~~~~~~~~~~~~v~a~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~e~~~gi~gik~~~~~~~~~~~~~~~l~~~~ 155 (338)
T cd01307 76 NIDGFRYTVIERSATRVYAFLNISRVGLVAQDELPDPDNIDEDAVVAAAREYPDVIVGLKARASKSVVGEWGIKPLELAK 155 (338)
T ss_pred CHHHHHHHHHHhhhceEEEEEeeeccccccccccCChhHCCHHHHHHHHHHCcCcEEEEEEEeecccccccCCcHHHHHH
Confidence 3333344443333 2 35666665543321 11 112233443332 3688899999876543333344588999
Q ss_pred HHHHHcCCcEEEecCCh
Q 014320 222 KRCKSLGALAMVHAENG 238 (427)
Q Consensus 222 ~~a~~~g~~v~~H~e~~ 238 (427)
+.+++.|+++.+|+++.
T Consensus 156 ~~a~~~~~pi~vH~~~~ 172 (338)
T cd01307 156 KIAKEADLPLMVHIGSP 172 (338)
T ss_pred HHHHHcCCCEEEEeCCC
Confidence 99999999999998653
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.8e-23 Score=207.21 Aligned_cols=247 Identities=14% Similarity=0.085 Sum_probs=135.5
Q ss_pred HHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceeccccCCChhhHHHHHHHH-----HHcCCCeEEEEEe
Q 014320 131 QAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMV-----KEKGINSFKFFMA 205 (427)
Q Consensus 131 ~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~g~~~ik~~~~ 205 (427)
.+.+++.|||++.|+..... ...+.++...+.+. ..+.+..................... ++..+.++|+|++
T Consensus 189 ~~~~~~~GiT~v~d~~~~~~-~~~~~~~~l~~~~~-l~~rv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vKl~~D 266 (479)
T cd01300 189 ARELASLGVTTVHDAGGGAA-DDIEAYRRLAAAGE-LTLRVRVALYVSPLAEDLLEELGARKNGAGDDRLRLGGVKLFAD 266 (479)
T ss_pred HHHHHhCCCcEEEcCCCChh-hHHHHHHHHHHCCC-CeEEEEEEeccccchhhhhhHHhhhccCCCCCcEEEeeEEEEEc
Confidence 45668899999999754221 11344444444332 12222111111111110111111000 0123567888887
Q ss_pred cC-------------------CCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHH
Q 014320 206 YK-------------------GSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPL 266 (427)
Q Consensus 206 ~~-------------------~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~ 266 (427)
.. +.+.++++++.++++.|++.|+++++|+.++..+....+.++
T Consensus 267 G~~~~~ta~l~~pY~~~~~~~g~~~~~~e~l~~~~~~a~~~g~~v~~Ha~gd~~i~~~l~~~~----------------- 329 (479)
T cd01300 267 GSLGSRTAALSEPYLDSPGTGGLLLISPEELEELVRAADEAGLQVAIHAIGDRAVDTVLDALE----------------- 329 (479)
T ss_pred CCCCcccccccCCcCCCCCCCCCccCCHHHHHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHH-----------------
Confidence 31 224568999999999999999999999988766654433222
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCc
Q 014320 267 LEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRAS 346 (427)
Q Consensus 267 ~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~ 346 (427)
+........+.+..+.|++..+. +.++++++.|+.+ .+||+++++.........+. ..+.+..+|+
T Consensus 330 -------~~~~~~g~~~~r~~i~H~~~~~~-~~~~~l~~~gv~~--~~~P~~~~~~~~~~~~~~lg-~~~~~~~~p~--- 395 (479)
T cd01300 330 -------AALKDNPRADHRHRIEHAQLVSP-DDIPRFAKLGVIA--SVQPNHLYSDGDAAEDRRLG-EERAKRSYPF--- 395 (479)
T ss_pred -------HHHHhcCCCCCCceeeecccCCH-HHHHHHHHcCCce--EeCcccccCchHHHHHhccc-HHHHhcCchH---
Confidence 11111112356788999988764 7889999999655 46898776544322100000 0123334554
Q ss_pred ccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 347 GHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 347 ~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
+.+++.|+.+++|||+.+ .+.. +|.....++.........+ ...+.++|+.++++++|.|||+.
T Consensus 396 ------~~~~~~Gv~v~lGSD~~~-~~~~------p~~~~~~av~~~~~~~~~~---~~~~~~ls~~~al~~~T~~~A~~ 459 (479)
T cd01300 396 ------RSLLDAGVPVALGSDAPV-APPD------PLLGIWAAVTRKTPGGGVL---GNPEERLSLEEALRAYTIGAAYA 459 (479)
T ss_pred ------HHHHHCCCeeeccCCCCC-CCCC------HHHHHHHHheeeCCCCCCC---CCccccCCHHHHHHHHHHHHHHH
Confidence 558999999999999843 2211 1111111111000000000 01245799999999999999974
|
YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling. |
| >COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-22 Score=197.52 Aligned_cols=293 Identities=20% Similarity=0.159 Sum_probs=163.7
Q ss_pred ccEEEECcEEEcC-CCceeeeEEEeCCeEEEeeCC-CCCCCCceEEeCCCCEEeccccccccccccCcCCCC------Ch
Q 014320 53 SKILIKGGTVVNA-HHQQIADVYVEDGIVVAVQPN-INVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSE------TI 124 (427)
Q Consensus 53 ~~~~i~~~~i~~~-~~~~~~~i~i~~g~I~~vg~~-~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~------~~ 124 (427)
..+.+.+++.++. ...+++.|+|+||||++||+. ...+++.++||++|++|+|||||+|+|+...-.+.. ..
T Consensus 10 ~~~~~~~~~~~~~~~~i~~~~v~i~~GkI~~vg~~~~~~~~~~~viD~~G~~V~PGLID~HtHl~~~~~~~~~~~~~~~~ 89 (406)
T COG1228 10 AMLATLAGRGLPGLGIIEDGAVLIEDGKIVAVGPEEIDIPAGAEVIDAKGKTVTPGLIDAHTHLGFGGSRGGEFELREAG 89 (406)
T ss_pred hhheeeccccCCCcceeecceEEEECCEEEEecCcccCCCCCCeEEeCCCCEEccceeeccccccccCCccchhhhcccC
Confidence 3467788888774 335679999999999999987 455667899999999999999999999987411000 00
Q ss_pred hh-----------------------------HHHHHHHHHcCCceEEecCcCCCCC--cHHHHHHHHHHHhccccceece
Q 014320 125 DD-----------------------------FFSGQAAALAGGTTMHIDFVIPING--SLTAGFEAYEKKAKNSCMDYGF 173 (427)
Q Consensus 125 e~-----------------------------~~~~~~~~l~~GvTtv~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 173 (427)
.. .......+++.|+|+.-........ .....++..........+.+..
T Consensus 90 ~~~~~i~~~~~gi~~~~~~~~~a~~~g~~~~~~~~l~~~~~~g~~~~e~~~~~g~~~~~e~~~~~~~~~~~~~~~~~~~~ 169 (406)
T COG1228 90 ASYTEILAAGGGILPLDRGFTTARDGGLKATALPRLKRAGSAGVTTGERKSGYGLDLETEGGHLRAAAGLKESRPVAVGS 169 (406)
T ss_pred ccHHHHHHhcCChhhhHHHHHHHhhcchHHHHHHHHHHHHHcCCcccceeeeecccccccccccchhhhccccccccccC
Confidence 00 0011223456676665543222111 0111111111111101111110
Q ss_pred -----eccc--cCCC-hhhHHHHHHHHHHcCCCeEEEEEe-cCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHH
Q 014320 174 -----HMAI--TKWD-EVVSDEMEVMVKEKGINSFKFFMA-YKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEG 244 (427)
Q Consensus 174 -----~~~~--~~~~-~~~~~~~~~l~~~~g~~~ik~~~~-~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~ 244 (427)
+... ...+ +...+.+..+++..--.++.-+.+ ......+++++++++++.|++.|+++.+|++..+.+.
T Consensus 170 t~~~~~~~~~~~~~~r~~~~~g~~~~i~~~a~~~l~~~~d~~~~~~~fs~~e~~~~l~~a~~~g~~v~~HA~~~~g~~-- 247 (406)
T COG1228 170 TPLAAHGVPEERKATREAYVAGARLLIKIVATGGLASFVDAFCEGGQFSPEEIRAVLAAALKAGIPVKAHAHGADGIK-- 247 (406)
T ss_pred ccccccCCcccccchHHHHHHHHHHHHHHHHhccccchhhccccccccCHHHHHHHHHHHHHCCCceEEEecccchHH--
Confidence 1110 0111 112222222121111111211222 2234567999999999999999999999997765332
Q ss_pred HHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhh--cCCCEEEecCccceeeC
Q 014320 245 QKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARK--AGQRVIGEPVVSGLVLD 322 (427)
Q Consensus 245 ~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~--~G~~v~~~~~p~~l~~~ 322 (427)
.+.+.+. ..+.|....+. +.++.+++ .|.++ +...|...+..
T Consensus 248 ---------------------------------~A~~~g~-~s~~H~~~ld~-~~~~~~a~~~~g~~~-~~l~p~~~~~l 291 (406)
T COG1228 248 ---------------------------------LAIRLGA-KSAEHGTLLDH-ETAALLAEKGAGTPV-PVLLPRTKFEL 291 (406)
T ss_pred ---------------------------------HHHHhCc-ceehhhhhcCH-hHHHHHhhccCCCcc-ccccchhhhhh
Confidence 1112222 23677766553 66777888 66542 33333221111
Q ss_pred cccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHH
Q 014320 323 DSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWD 402 (427)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~ 402 (427)
. +.++...+.+++.|+.++++||+.|.+... .+.+.+.
T Consensus 292 ~----------------------e~~~~~~~~l~~~GV~vai~TD~~~~~~~~--------------------~l~~~m~ 329 (406)
T COG1228 292 R----------------------ELDYKPARKLIDAGVKVAIGTDHNPGTSHG--------------------SLALEMA 329 (406)
T ss_pred h----------------------cccchhHHHHHHCCCEEEEEcCCCCCchhh--------------------HHHHHHH
Confidence 1 112233667999999999999997765311 1222232
Q ss_pred HHHhcCCCCHHHHHHHHchhhhcC
Q 014320 403 TMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 403 ~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
.++..+ ||++|+++.+|.|||++
T Consensus 330 l~~~~g-mtp~EaL~a~T~naA~a 352 (406)
T COG1228 330 LAVRLG-MTPEEALKAATINAAKA 352 (406)
T ss_pred HHHHcC-CCHHHHHHHHHHHHHHH
Confidence 345566 99999999999999985
|
|
| >PRK10027 cryptic adenine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-21 Score=194.83 Aligned_cols=178 Identities=17% Similarity=0.160 Sum_probs=130.2
Q ss_pred CccEEEECcEEEcCCC--ceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHH
Q 014320 52 SSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS 129 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~--~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~ 129 (427)
+.+++|+|++|+++.. ...++|+|+||||++|++......+.++||++|++|+|||||+|+|+..+ . .+++++
T Consensus 29 ~~dllI~ng~vv~~~~~~~~~~~V~I~~GrI~~Vg~~~~~~~~~~vIDa~G~~v~PGlIDaHvHiess--~-~~p~~~-- 103 (588)
T PRK10027 29 VADYIIDNVSILDLINGGEISGPIVIKGRYIAGVGAEYADAPALQRIDARGATAVPGFIDAHLHIESS--M-MTPVTF-- 103 (588)
T ss_pred CCCEEEECcEEEeCCCCcEEeeEEEEECCEEEEeCCCCCCCCCCeEEECCCCEEEECeEeccccCCcc--c-CCHhHH--
Confidence 5678999999998643 45678999999999997643222346899999999999999999999886 2 367777
Q ss_pred HHHHHHcCCceEEecCcCCCC-CcHHHHHHHHHHHhccccceeceecc----ccC-CC----hhhHHHHHHHHHHcCCCe
Q 014320 130 GQAAALAGGTTMHIDFVIPIN-GSLTAGFEAYEKKAKNSCMDYGFHMA----ITK-WD----EVVSDEMEVMVKEKGINS 199 (427)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~----~~~~~~~~~l~~~~g~~~ 199 (427)
.+.++.+||||++++..... ....+.++...+.+.+..+++++..+ ... .. .-..+++++++++.++.+
T Consensus 104 -a~aal~~G~TtVv~dPhei~nv~g~~gi~~~l~~a~~~p~~~~~~~ps~vpa~~~~Et~Ga~~~~~~~~~~l~~~~v~g 182 (588)
T PRK10027 104 -ETATLPRGLTTVICDPHEIVNVMGEAGFAWFARCAEQARQNQYLQVSSCVPALEGCDVNGASFTLEQMLAWRDHPQVTG 182 (588)
T ss_pred -HHHHHhCceEEEEcCCCCcccCCCHHHHHHHHHHhhhCCCeeEEeecccCcCCcccccCCCcCCHHHHHHHhcCCCcee
Confidence 44689999999998754322 24456666666666555555433221 111 11 123567888886778889
Q ss_pred EEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCCh
Q 014320 200 FKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG 238 (427)
Q Consensus 200 ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~ 238 (427)
+..+|++.+....+++.+.++... .++++..|+-.-
T Consensus 183 lgEvMn~~~V~~~d~~~~~ki~~~---~~~~idGH~p~l 218 (588)
T PRK10027 183 LAEMMDYPGVISGQNALLDKLDAF---RHLTLDGHCPGL 218 (588)
T ss_pred EEeccCccccccCCHHHHHHHHHh---CCCceECCCCCC
Confidence 999999998887888888888744 799999997543
|
|
| >cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.2e-22 Score=191.36 Aligned_cols=264 Identities=19% Similarity=0.114 Sum_probs=156.4
Q ss_pred eEEeCCCCEEeccccccccccccCcCCCCC----hhhH-----HHHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHh
Q 014320 94 KVLDATGKFVMPGGIDPHTHLAMEFMGSET----IDDF-----FSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKA 164 (427)
Q Consensus 94 ~viD~~g~~v~PG~ID~H~H~~~~~~g~~~----~e~~-----~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~ 164 (427)
++||++|++|||||||+|+|+......... .+.+ ....+.++++||||++|++........+.++.....+
T Consensus 2 ~vID~~g~~v~PGliD~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~g~~~~~~~~~~~~~g~~~g 81 (342)
T cd01299 2 QVIDLGGKTLMPGLIDAHTHLGSDPGDLPLDLALPVEYRTIRATRQARAALRAGFTTVRDAGGADYGLLRDAIDAGLIPG 81 (342)
T ss_pred cEEeCCCCEECCCeeeeeeeccccCCCccccccCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCcchHHHHHHHHcCCccC
Confidence 689999999999999999998664111110 1111 2457788999999999987542211122222222222
Q ss_pred cccc------------ceece---------eccccCCChhhHHHHHHHHHHcCCCeEEEEEecCC--------CccCCHH
Q 014320 165 KNSC------------MDYGF---------HMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKG--------SFMINDE 215 (427)
Q Consensus 165 ~~~~------------~~~~~---------~~~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~~~~--------~~~~~~~ 215 (427)
++.. .++.. +.......++..+.++++. +.|++.+|+|+++.. ...++++
T Consensus 82 Pr~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e 160 (342)
T cd01299 82 PRVFASGRALSQTGGHGDPRGLSGLFPAGGLAAVVDGVEEVRAAVREQL-RRGADQIKIMATGGVLSPGDPPPDTQFSEE 160 (342)
T ss_pred CceeecchhhcccCCCCccccccccccccCCcceecCHHHHHHHHHHHH-HhCCCEEEEeccCCcCCCCCCCcccCcCHH
Confidence 2210 11100 0111223455667777777 689999999997521 1357899
Q ss_pred HHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHH
Q 014320 216 LLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMD 295 (427)
Q Consensus 216 ~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~ 295 (427)
.++++++.|++.|+++.+|+.+...+... . +.|.. .+.|+...+
T Consensus 161 ~l~~~~~~A~~~g~~v~~H~~~~~~i~~~----l-------------------------------~~G~~-~i~H~~~~~ 204 (342)
T cd01299 161 ELRAIVDEAHKAGLYVAAHAYGAEAIRRA----I-------------------------------RAGVD-TIEHGFLID 204 (342)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHH----H-------------------------------HcCCC-EEeecCCCC
Confidence 99999999999999999999775443221 1 12332 488887665
Q ss_pred HHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCC-------CcccHHHHHHHHhcCCceEEecCC
Q 014320 296 AMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIR-------ASGHNKALQAALATGILQLVGTDH 368 (427)
Q Consensus 296 ~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr-------~~~~~~~l~~~l~~G~~~~lgSD~ 368 (427)
. +.++++++.|+.+++ ||.............. .++.. .......++++.+.|+.+++|||.
T Consensus 205 ~-~~~~~l~~~g~~~~~--t~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~GTD~ 272 (342)
T cd01299 205 D-ETIELMKEKGIFLVP--TLATYEALAAEGAAPG---------LPADSAEKVALVLEAGRDALRRAHKAGVKIAFGTDA 272 (342)
T ss_pred H-HHHHHHHHCCcEEeC--cHHHHHHHHhhccccC---------CCHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 4 778899999977664 5543211000000000 01000 011235577889999999999996
Q ss_pred CCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 369 CAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 369 ~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
...... +.. . . .-+..+ .+.++++.++++++|.|||++
T Consensus 273 ~~~~~~--------------~~~-~--~--~e~~~~-~~~~~~~~~al~~~T~~~a~~ 310 (342)
T cd01299 273 GFPVPP--------------HGW-N--A--RELELL-VKAGGTPAEALRAATANAAEL 310 (342)
T ss_pred CCCCCc--------------hhH-H--H--HHHHHH-HHhCCCHHHHHHHHHHHHHHH
Confidence 321100 000 0 0 011112 234689999999999999974
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.9e-21 Score=185.14 Aligned_cols=179 Identities=20% Similarity=0.283 Sum_probs=137.0
Q ss_pred CccEEEECcEEEcCCC--ceeeeEEEeCCeEEEe-eCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHH
Q 014320 52 SSKILIKGGTVVNAHH--QQIADVYVEDGIVVAV-QPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFF 128 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~--~~~~~i~i~~g~I~~v-g~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~ 128 (427)
..|++++|+++++.-. +..++|+|.+|||++| ++.. .++.++||+.|++|.|||||.|+|+..+ ..++..|
T Consensus 23 ~adlv~~ng~ivdv~~gei~~~dIaI~~grI~~v~~~~~--~e~~~~iDa~g~yivPGfID~H~HIESS---m~tP~~F- 96 (584)
T COG1001 23 KADLVLKNGRIVDVVTGEIYKGDIAIAGGRIVGVIGEYR--AEATEVIDAAGRYIVPGFIDAHLHIESS---MLTPSEF- 96 (584)
T ss_pred CCCEEEECCEEEEeeeccEEeeeEEEECCEEEEeecCcC--cccceeecCCCCEeccceeecceecccc---ccCHHHH-
Confidence 6789999999999654 5689999999999995 4432 4568999999999999999999999875 5677777
Q ss_pred HHHHHHHcCCceEEe-cCcCCCCCcHHHHHHHHHHHhccccceeceeccccC--------CChhhHHHHHHHHHHcCCCe
Q 014320 129 SGQAAALAGGTTMHI-DFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITK--------WDEVVSDEMEVMVKEKGINS 199 (427)
Q Consensus 129 ~~~~~~l~~GvTtv~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~g~~~ 199 (427)
+++.+..||||++ |.+...+....+.++.+.+.....++++.+..+... ..+-..+.+++++++..+.+
T Consensus 97 --A~~Vlp~GtTtvV~DPHEIaNV~G~~Gi~~ml~~a~~~pl~~~~~~pScVPat~~Et~Ga~l~a~~i~e~~~~p~Vig 174 (584)
T COG1001 97 --ARAVLPHGTTTVVSDPHEIANVLGEDGIRFMLDEAKETPLKVYVMLPSCVPATPFETSGAELTAEDIKELLEHPEVIG 174 (584)
T ss_pred --HHHhhccCceEEeeCcHHHHhhccHHHHHHHHHHHhhCCeEEEEecccCccCCccccCCceecHHHHHHHhhCCCccc
Confidence 7889999999988 444444445677788888777777777765543211 11123567888887778889
Q ss_pred EEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChh
Q 014320 200 FKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGD 239 (427)
Q Consensus 200 ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~ 239 (427)
+..+|++.+...-++ .+...++.+++.|+++..|+.+-+
T Consensus 175 l~E~Mn~pgVi~~D~-~~l~kl~a~~~~~k~VdGHapgl~ 213 (584)
T COG1001 175 LGEMMNFPGVIEGDP-DMLAKLEAARKAGKPVDGHAPGLS 213 (584)
T ss_pred hhhhcCCchhccCCH-HHHHHHHHHHHcCCeecccCCCCC
Confidence 999999887766454 555666789999999999986544
|
|
| >PLN02303 urease | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=191.70 Aligned_cols=193 Identities=16% Similarity=0.230 Sum_probs=132.9
Q ss_pred CccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCC--C----------CCceEEeCCCCEEeccccccccccccCcC
Q 014320 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV--G----------DDVKVLDATGKFVMPGGIDPHTHLAMEFM 119 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~--~----------~~~~viD~~g~~v~PG~ID~H~H~~~~~~ 119 (427)
..|++|+|++|++..+...++|.|+||||++||+.... + +++++||++|++|+|||||+|+|+..+
T Consensus 333 ~~DlVItNa~IID~~Gi~kaDI~IkDGrIvaIGkagnp~i~~gv~~~~~~g~~teVIDAeGlIVtPG~ID~HVHf~~P-- 410 (837)
T PLN02303 333 SLDTVITNAVIIDYTGIYKADIGIKDGLIVGIGKAGNPDVMDGVTSNMIVGVNTEVIAGEGMIVTAGGIDCHVHFICP-- 410 (837)
T ss_pred cCCEEEeCeEEECCCCcEEeEEEEECCEEEEecCCCCcccccccccccccCCCCeEEECCCCEEEeCEEEeecCCCCC--
Confidence 45799999999996667788999999999999974211 1 246899999999999999999999766
Q ss_pred CCCChhhHHHHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceeccccCCChhhHHHHHHHHHHcCCCe
Q 014320 120 GSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINS 199 (427)
Q Consensus 120 g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 199 (427)
+. ..+.+..+...++.+|+|++-+............++.+.+......+++++++.. .....+++.++. +.|+.+
T Consensus 411 g~-~~eaLasGVTTai~GGtgp~pnT~ptt~t~g~e~I~~~L~aa~~~pvn~Gf~gkG---~~s~l~eL~eli-eaGa~G 485 (837)
T PLN02303 411 QL-ATEAIASGITTLVGGGTGPAHGTCATTCTPAPSHMKLMLQSTDDLPLNFGFTGKG---NTAKPEGLHEII-KAGAMG 485 (837)
T ss_pred cH-HHHHHHHhHHHHHhcCCCCCCcccCcCCCCCHHHHHHHHHhcccCCCcEEEEccC---cccCHHHHHHHH-HcCcEE
Confidence 32 2344444444444444444210000000023556666666666667888876532 223356677776 679999
Q ss_pred EEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhh---HHHHH--------HHHHHcCCCC
Q 014320 200 FKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA---VFEGQ--------KRMIELGITG 255 (427)
Q Consensus 200 ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~---~~~~~--------~~l~~~G~~~ 255 (427)
||.+.. +..+++.+.++++.|+++|+++++|+|+..+ ++..+ .++++.|+.+
T Consensus 486 fK~h~d----~gvTpelL~raLe~AkelGVpVaIHAEdLnE~G~vE~t~~a~G~RpIh~~h~~Ga~g 548 (837)
T PLN02303 486 LKLHED----WGTTPAAIDNCLDVAEEYDIQVTIHTDTLNESGCVEHSIAAFKGRTIHTYHSEGAGG 548 (837)
T ss_pred EEECCC----CCCCHHHHHHHHHHHHHcCCEEEEecCcccccchHHHHHHHHCCChHHHHHhcCCCC
Confidence 987643 3468999999999999999999999988544 43333 3567777765
|
|
| >PRK06846 putative deaminase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-19 Score=178.21 Aligned_cols=241 Identities=15% Similarity=0.138 Sum_probs=141.2
Q ss_pred eeeeEEEeCCeEEEeeCCCCC-CCCceEEeCCCCEEeccccccccccccCcCCCCC--------------------h---
Q 014320 69 QIADVYVEDGIVVAVQPNINV-GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSET--------------------I--- 124 (427)
Q Consensus 69 ~~~~i~i~~g~I~~vg~~~~~-~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~--------------------~--- 124 (427)
...+|.|+||+|++|++.... +.+.++||++|++|+|||||+|+|+.++...... +
T Consensus 30 ~~~~i~i~~g~I~~i~~~~~~~~~~~~~id~~g~~v~Pg~iD~H~H~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~ 109 (410)
T PRK06846 30 ALCTLEIQDGKIVAIRPNKQVPDATLPTYDANGLLMLPAFREMHIHLDKTYYGGPWKACRPAKTIQDRIELEQKELPELL 109 (410)
T ss_pred eeEEEEEECCEEEEeecCCCCCCCCCceEeCCCCEEecCEEeeeecccchhhccchhhcCCcccHHHHHhhhhhhHHHhH
Confidence 467999999999999986322 2346799999999999999999999875211110 0
Q ss_pred hhHH----HHHHHHHcCCceEEecCcCCCCC----cHHHHHHHHHHHhccccceeceec-cccC-CChhhHHHHHHHHHH
Q 014320 125 DDFF----SGQAAALAGGTTMHIDFVIPING----SLTAGFEAYEKKAKNSCMDYGFHM-AITK-WDEVVSDEMEVMVKE 194 (427)
Q Consensus 125 e~~~----~~~~~~l~~GvTtv~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~l~~~ 194 (427)
+... ......+..|+|+++++...... .....++...+.. ..+...... .... ......+.+++.. +
T Consensus 110 ~~~~~~a~~~l~~~~~~Gtt~~r~~v~~~~~~~~~~~~a~~e~l~e~~--~~v~~~~~a~~~~g~~~~~~~~lL~~al-~ 186 (410)
T PRK06846 110 PTTQERAEKLIELLQSKGATHIRSHCNIDPVIGLKNLENLQAALERYK--DGFTYEIVAFPQHGLLRSNSEPLMREAM-K 186 (410)
T ss_pred HHHHHHHHHHHHHHHhCCccEEEEEEeeCcccccchHHHHHHHHHHhh--CcceEEEEeccCcccCCccHHHHHHHHH-H
Confidence 0011 12334567899998887542222 1111122222211 222222110 0000 0122234466666 6
Q ss_pred cCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-CChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHH
Q 014320 195 KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATT 273 (427)
Q Consensus 195 ~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~ 273 (427)
.|+..++. +.+......+++.++++++.|+++|+++++|. +....... .++
T Consensus 187 ~Ga~~i~g-l~p~~~~~~~~~~l~~~~~lA~~~g~~v~~Hv~e~~~~~~~---------------------------~~~ 238 (410)
T PRK06846 187 MGAHLVGG-VDPASVDGAIEKSLDTMFQIAVDFNKGVDIHLHDTGPLGVA---------------------------TIK 238 (410)
T ss_pred cCCCEEeC-CCCccCCcCHHHHHHHHHHHHHHhCCCcEEEECCCCChhHH---------------------------HHH
Confidence 78876653 23444445678999999999999999999996 43322111 111
Q ss_pred HHHHHHHhcCC--CEEEEcCCCH-----HH-HHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCC
Q 014320 274 RAIRLAEFVNT--PLYVVHVMSM-----DA-MEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRA 345 (427)
Q Consensus 274 ~~~~~~~~~g~--~~~i~H~~~~-----~~-~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~ 345 (427)
+.++...+.|. ++.+.|+... +. .+.++.+++.|+.|++. +| . +.. .+|
T Consensus 239 ~~~~~~~~~gl~~~v~~~H~~~l~~~~~~e~~~li~~la~~g~~v~~~-~~---------~-------~~g---~~p--- 295 (410)
T PRK06846 239 YLVETTEEAQWKGKVTISHAFALGDLNEEEVEELAERLAAQGISITST-VP---------I-------GRL---HMP--- 295 (410)
T ss_pred HHHHHHHHhCCCCCEEEEecchhhcCCHHHHHHHHHHHHHcCCeEEEe-CC---------C-------CCC---CCC---
Confidence 22233223322 7889998642 22 23366789999887742 22 0 011 244
Q ss_pred cccHHHHHHHHhcCCceEEecCCC
Q 014320 346 SGHNKALQAALATGILQLVGTDHC 369 (427)
Q Consensus 346 ~~~~~~l~~~l~~G~~~~lgSD~~ 369 (427)
++++++.|+.+++|||+.
T Consensus 296 ------~~~l~~~Gv~v~lGtD~~ 313 (410)
T PRK06846 296 ------IPLLHDKGVKVSLGTDSV 313 (410)
T ss_pred ------HHHHHhCCCeEEEecCCC
Confidence 456888999999999963
|
|
| >cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.1e-20 Score=179.98 Aligned_cols=173 Identities=20% Similarity=0.271 Sum_probs=118.4
Q ss_pred EEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCc-CCCCChhhHHHHHHHH
Q 014320 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEF-MGSETIDDFFSGQAAA 134 (427)
Q Consensus 56 ~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~-~g~~~~e~~~~~~~~~ 134 (427)
+|+|++|+++....+.+|.|+||||++|++....+.+.++||++|++|+|||||+|+|..... ....+++++...++.+
T Consensus 2 ~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~~~~~~~vid~~g~~l~PG~iD~H~H~~~g~~~~~~~~e~~~~~~~~~ 81 (374)
T cd00854 2 IIKNARILTPGGLEDGAVLVEDGKIVAIGPEDELEEADEIIDLKGQYLVPGFIDIHIHGGGGADFMDGTAEALKTIAEAL 81 (374)
T ss_pred EEEeEEEeCCCEEcccEEEEECCEEEEecCCCCcccCCcEEECCCCEecccEEEeeecccCCCCCCCCCHHHHHHHHHHH
Confidence 789999999844567899999999999987544333468999999999999999999986531 1123468888889999
Q ss_pred HcCCceEEecCcCCCCC-cHHHHHHHHHHHhcc--ccceeceec--cccC------CCh-----hhHHHHHHHHHHcCCC
Q 014320 135 LAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN--SCMDYGFHM--AITK------WDE-----VVSDEMEVMVKEKGIN 198 (427)
Q Consensus 135 l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~------~~~-----~~~~~~~~l~~~~g~~ 198 (427)
+++|||+++++...... ...+.++.+++.... ....++++. +... .+. ...+++++++ ..+.+
T Consensus 82 ~~~GvTtv~~t~~t~~~~~~~~~l~~~~~~~~~~~g~~~~g~hleGP~~~~~~~g~h~~~~~~~~~~~~~~~~~-~~~~~ 160 (374)
T cd00854 82 AKHGTTSFLPTTVTAPPEEIAKALAAIAEAIAEGQGAEILGIHLEGPFISPEKKGAHPPEYLRAPDPEELKKWL-EAAGG 160 (374)
T ss_pred HccCcceeeccccCCCHHHHHHHHHHHHHHhhcCCCCeeEEEeeecCccCcccCCCCCHHHcCCcCHHHHHHHH-HhcCC
Confidence 99999999998644332 344444554443221 122233322 1110 011 1235667766 45557
Q ss_pred eEEEEEecCCCccCCHHHH--HHHHHHHHHcCCcEE-EecC
Q 014320 199 SFKFFMAYKGSFMINDELL--IEGFKRCKSLGALAM-VHAE 236 (427)
Q Consensus 199 ~ik~~~~~~~~~~~~~~~l--~~~~~~a~~~g~~v~-~H~e 236 (427)
.+|++. +.+|.. .++++.++++|+++. .|..
T Consensus 161 ~ik~~t-------laPE~~~~~~~i~~~~~~gi~v~~GH~~ 194 (374)
T cd00854 161 LIKLVT-------LAPELDGALELIRYLVERGIIVSIGHSD 194 (374)
T ss_pred CEEEEE-------ECCCCCChHHHHHHHHHCCeEEEeeCCc
Confidence 888863 455555 789999999999995 8964
|
This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling. |
| >TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-19 Score=174.61 Aligned_cols=127 Identities=17% Similarity=0.255 Sum_probs=93.0
Q ss_pred CccEEEECcEEEcCCCc-eeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCc-CCCCChhhHHH
Q 014320 52 SSKILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEF-MGSETIDDFFS 129 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~~-~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~-~g~~~~e~~~~ 129 (427)
..+++|+|++|++++.. .+++|.|+||||++|++..+.+++.++||++|++|+|||||+|+|..... ....+.+++..
T Consensus 2 ~~~~~i~n~~i~~~~~~~~~~~i~V~dGkI~~I~~~~~~~~~~~viD~~G~~i~PGfID~HvHg~~g~~~~~~~~e~~~~ 81 (380)
T TIGR00221 2 AESYLLKDIAIVTGNEVIDNGAVGINDGKISTVSTEAELEPEIKEIDLPGNVLTPGFIDIHIHGCGGVDTNDASFETLEI 81 (380)
T ss_pred CceEEEEeeEEECCCCEEeccEEEEECCEEEEEcccccCCCCCeEEECCCCEEccceeeeeeccccCcCCCCCCHHHHHH
Confidence 34689999999998764 46899999999999987543334558999999999999999999985431 11235688989
Q ss_pred HHHHHHcCCceEEecCcCCCCC-cHHHHHHHHHHHh--ccccceeceecccc
Q 014320 130 GQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA--KNSCMDYGFHMAIT 178 (427)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 178 (427)
.++.++++|||+++++..+.+. ...+.++.+.+.. .+....+++|...+
T Consensus 82 ~~~~~~~~GvTt~l~t~~t~~~~~~~~~l~~~~~~~~~~~~a~~lG~HlEGP 133 (380)
T TIGR00221 82 MSERLPKSGCTSFLPTLITQPDENIKQAVKNMREYLAKEKNAQALGLHLEGP 133 (380)
T ss_pred HHHHHHhcCeeEEeeeccCCCHHHHHHHHHHHHHHHhccCCceeeeEeeecC
Confidence 9999999999999998654432 4455555555432 12445667665433
|
|
| >TIGR01792 urease_alph urease, alpha subunit | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=179.76 Aligned_cols=170 Identities=18% Similarity=0.194 Sum_probs=123.0
Q ss_pred CccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCC----------CCCceEEeCCCCEEeccccccccccccCcCCC
Q 014320 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV----------GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS 121 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~----------~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~ 121 (427)
.+|++|+|++|++..+...++|.|+||||++|++.... ..++++||++|++|+|||||+|+|+..+ +
T Consensus 65 ~MDlVIkNg~VID~~gi~kaDI~IkDGrIaaIG~~~~p~~~~~v~~~~~~~tEVIDa~GkIV~PGlIDtHvH~~~P--~- 141 (567)
T TIGR01792 65 VLDLVITNALILDWTGIYKADIGIKNGRIVGIGKAGNPDTMDGVDMIVGASTEAISGEGKIVTAGGIDTHVHYISP--Q- 141 (567)
T ss_pred cCcEEEECeEEECCCCeEEEEEEEECCEEEEEcCCCcccccccccccCCCCCeEEECCCCEEEECeEEeecCCCCc--c-
Confidence 45799999999997666789999999999999975321 1346899999999999999999998654 1
Q ss_pred CChhhHHHHHHHHHcCCceEEecCcCCC-----CC---cHHHHHHHHHHHhccccceeceeccccCCChhhHHHHHHHHH
Q 014320 122 ETIDDFFSGQAAALAGGTTMHIDFVIPI-----NG---SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVK 193 (427)
Q Consensus 122 ~~~e~~~~~~~~~l~~GvTtv~d~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (427)
..++++.+||||+++.+..+ .. ...-......+......++++++... .....+.+.+++
T Consensus 142 --------~~~aAl~gGVTTmI~~Gtgp~~~t~pTt~t~~~~~~~~~l~aa~~~~in~g~~g~g---~~~~~~~L~e~i- 209 (567)
T TIGR01792 142 --------QVQAALDNGITTLIGGGTGPADGTNATTCTPGPWYLHRMLQAADGLPINFGFTGKG---SGSGPAALIEQI- 209 (567)
T ss_pred --------HHHHHHhCceEEEecCCCccccCCCCcccccchhhHHHHHHHhccCCccEEEEeCC---ccchHHHHHHHH-
Confidence 16788999999999964311 01 11111222223334455666665321 122345566666
Q ss_pred HcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhh
Q 014320 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA 240 (427)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~ 240 (427)
+.|+.++|.+.. +.++++.+.++++.|+++|+++++|+|+..+
T Consensus 210 ~aGa~gfK~h~~----y~~s~e~L~~al~~A~e~gv~V~iH~ET~~E 252 (567)
T TIGR01792 210 EAGACGLKVHED----WGATPAAIDNALSVADEYDVQVAVHTDTLNE 252 (567)
T ss_pred HcCCcEEEeCCC----CCCCHHHHHHHHHHHHHcCCEEEEeCCCccc
Confidence 578888886543 4589999999999999999999999987766
|
This model describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Accessory proteins for incorporation of the nickel cofactor are usually found in addition to the urease alpha, beta, and gamma subunits. The trusted cutoff is set above the scores of many reported fragments and of a putative second urease alpha chain in Streptomyces coelicolor. |
| >TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915 | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-18 Score=170.20 Aligned_cols=175 Identities=21% Similarity=0.218 Sum_probs=106.7
Q ss_pred cEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCC-CEEeccccccccccccCcCCCCChhhHHHHHH
Q 014320 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATG-KFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA 132 (427)
Q Consensus 54 ~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g-~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~ 132 (427)
+++|+|++|+++. ..+|+|+||||++|++.... ++.++||++| ++|+|||||+|+|+..+ +....++. ..
T Consensus 2 ~~~i~n~~i~~~~---~~~v~i~~g~I~~v~~~~~~-~~~~~iD~~g~~~l~PG~ID~H~H~~~~--~~~~~~~~---~~ 72 (365)
T TIGR03583 2 DLLIKNGRTVNGT---PVDIAIEDGKIAAVGTTITG-SAKQTIDLEGETYVSAGWIDDHTHCFPK--SALYYDEP---DE 72 (365)
T ss_pred cEEEECcEEecCC---eeEEEEECCEEEEecCCCCC-CCCeEEECCCCeEEecCEEEeeeccCCC--cccccCCH---hH
Confidence 5899999999853 45899999999999874332 2458999999 99999999999999754 32333333 24
Q ss_pred HHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccc--cceeceecccc-----CCChhhHHHHHHHHHHc--CCCeEEEE
Q 014320 133 AALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNS--CMDYGFHMAIT-----KWDEVVSDEMEVMVKEK--GINSFKFF 203 (427)
Q Consensus 133 ~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~--g~~~ik~~ 203 (427)
.++.+|||+++++............+..++...+. .+++...+... ...+...++++++.+.. ++.++|.+
T Consensus 73 ~a~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~vv~~~~~ 152 (365)
T TIGR03583 73 IGVKTGVTTVVDAGSTGADDIDDFYRLAQQAKTNVFALLNISRIGLVAQDELADLSNLDASAVKQAVERYPDFIVGLKAR 152 (365)
T ss_pred hhhcCceeEEEeCCCCCCCCHHHHHHHHHhhCCcEEEEeeehhccccChhhhhChHHhHHHHHHHHHHhCcCcEEEEEEe
Confidence 46889999999976433333333333332222121 12222122110 11122344455554322 35677888
Q ss_pred EecCC--CccCCHHHHHHHHHHHHHcCCcEEEecCCh
Q 014320 204 MAYKG--SFMINDELLIEGFKRCKSLGALAMVHAENG 238 (427)
Q Consensus 204 ~~~~~--~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~ 238 (427)
+++.. ....++..+.+.+..+ +.++++.+|+.+.
T Consensus 153 ~t~~~i~E~gl~~~~~~~~l~~~-~~~~pv~vH~~~a 188 (365)
T TIGR03583 153 MSKSVVGDNGIEPLEIAKQIQQE-NLELPLMVHIGSA 188 (365)
T ss_pred ecccccccCCcCHHHHHHHHHHh-cCCCcEEEEeCCC
Confidence 87532 1223455555555544 6899999998654
|
Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown. |
| >PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=175.56 Aligned_cols=123 Identities=18% Similarity=0.217 Sum_probs=88.6
Q ss_pred EEEECcEEEcCCCce-eeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCC-----CCChhhHH
Q 014320 55 ILIKGGTVVNAHHQQ-IADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG-----SETIDDFF 128 (427)
Q Consensus 55 ~~i~~~~i~~~~~~~-~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g-----~~~~e~~~ 128 (427)
++|+|++|++++... +++|+|+||||++|++....+.+.++||++|++|+|||||+|+|......- ..+.+.+.
T Consensus 2 ~~i~n~~i~~~~~~~~~~~v~IedgkI~~I~~~~~~~~~~~~ID~~G~~l~PG~ID~HvHG~~g~~~~~~~~~~~~~~l~ 81 (382)
T PRK11170 2 YALTNGRIYTGHEVLDDHAVVIADGLIEAVCPVAELPPGIEQRDLNGAILSPGFIDLQLNGCGGVQFNDTAEAISVETLE 81 (382)
T ss_pred EEEEeeEEECCCCeEeCCEEEEECCEEEEecCCccCCCCCeEEeCCCCEEccceeeeeecCccCcccccCccCCCHHHHH
Confidence 578999999988644 579999999999998754333345899999999999999999997543110 12567787
Q ss_pred HHHHHHHcCCceEEecCcCCCCC-cHHHHHHHHHHHh-ccccceeceeccc
Q 014320 129 SGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAI 177 (427)
Q Consensus 129 ~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~ 177 (427)
...+.++++|||+++++..+.+. ...+.++.+.+.. ......+++|...
T Consensus 82 ~~~~~~~~~GvTt~lpT~it~~~~~~~~~l~~~~~~~~~~~a~~~G~HlEG 132 (382)
T PRK11170 82 IMQKANEKSGCTSFLPTLITSSDELMKQAVRVMREYLAKHPNQALGLHLEG 132 (382)
T ss_pred HHHHHHHhcCEeEEeeeccCCCHHHHHHHHHHHHHHHhcCCCeEEEEEeec
Confidence 87888899999999987654332 3445555555432 2344566766543
|
|
| >COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.6e-19 Score=159.68 Aligned_cols=143 Identities=17% Similarity=0.221 Sum_probs=94.9
Q ss_pred EEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEecccccccccccc----CcCCCCC--hhhHHH
Q 014320 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAM----EFMGSET--IDDFFS 129 (427)
Q Consensus 56 ~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~----~~~g~~~--~e~~~~ 129 (427)
+|.|++|+..+...++.|+|+||+|..|...... ....+|++|.+++|||||.|+---+ |-.|... ...+..
T Consensus 2 ~lsnarivl~D~v~~gsv~i~DG~Ia~i~~g~s~--~~~~~d~eGd~LLPGlIeLHtD~lE~~~~PRPgV~wp~~aAi~a 79 (377)
T COG3454 2 ILSNARIVLEDRVVNGSVLIRDGLIADIDEGISP--LAAGIDGEGDYLLPGLIELHTDNLERFMTPRPGVRWPPIAAILA 79 (377)
T ss_pred ccccceEEeecceeeeeEEEecceEeeeccccCc--ccccccCCCCeecccchhhcchhhhcccCCCCCCCCCchHHHHH
Confidence 6789999999988889999999999999876432 2467899999999999999995322 1112222 223334
Q ss_pred HHHHHHcCCceEEecCcCCCCC--------cHHHHHHHHHHHh--ccccceeceeccccCCChhhHHHHHHHHHHcCCCe
Q 014320 130 GQAAALAGGTTMHIDFVIPING--------SLTAGFEAYEKKA--KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINS 199 (427)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~~~~--------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 199 (427)
..+..+.+||||+.|....+.. ...+.++...+.. .+...+..+|........+.++.++++....++..
T Consensus 80 hD~~l~~sGITTv~dal~iGd~~~gg~r~~~~~~midaI~~~~~~g~lradHr~HlRcEvs~~~~l~~~e~~~~~p~v~L 159 (377)
T COG3454 80 HDAQLAASGITTVLDALAIGDVRDGGLRLENLRKMIDAIEEAQAAGRLRADHRLHLRCEVSHPATLPLFEDLMDHPRVKL 159 (377)
T ss_pred hhHHHHhcChhhHHhhhhcCcccCCccchHHHHHHHHHHHHHHhccchhhccceeeeeecCChhHHHHHHHHhcCCCeeE
Confidence 4556789999999986432211 3344444444432 23455666776665556677788888773333333
Q ss_pred E
Q 014320 200 F 200 (427)
Q Consensus 200 i 200 (427)
+
T Consensus 160 i 160 (377)
T COG3454 160 I 160 (377)
T ss_pred E
Confidence 3
|
|
| >KOG3968 consensus Atrazine chlorohydrolase/guanine deaminase [Nucleotide transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.4e-19 Score=165.66 Aligned_cols=299 Identities=18% Similarity=0.141 Sum_probs=170.8
Q ss_pred eeeeEEEeC-CeEEEeeCCCCCC----------CCceEEeCCCCEEeccccccccccccCc-------------------
Q 014320 69 QIADVYVED-GIVVAVQPNINVG----------DDVKVLDATGKFVMPGGIDPHTHLAMEF------------------- 118 (427)
Q Consensus 69 ~~~~i~i~~-g~I~~vg~~~~~~----------~~~~viD~~g~~v~PG~ID~H~H~~~~~------------------- 118 (427)
++..+.|.| |||+.|++....+ +..++++..|+++||||||+|+|....+
T Consensus 26 e~~sl~Vd~~GKi~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~mPGfVdtH~H~a~q~~~s~~g~d~pll~wl~~~~ 105 (439)
T KOG3968|consen 26 EGSSLGVDDTGKIVFIGKAYFDENKLKGEGVEKENTKIKLSSGHFLMPGFVDTHIHPAHQFAMSGAGTDMPLLQWLGKYT 105 (439)
T ss_pred cCcceeecCCccEEEeeccccchhhhcccccccccceeeecCCcEEecceeecccchHhhhhhhccccCcHHHHHhhcce
Confidence 356668887 9999999753221 2457899999999999999999932110
Q ss_pred ---CCCCCh-hh----HHHHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceece-----eccc--cCCChh
Q 014320 119 ---MGSETI-DD----FFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGF-----HMAI--TKWDEV 183 (427)
Q Consensus 119 ---~g~~~~-e~----~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~ 183 (427)
.+.... |+ +....+.++++||||+..+...........++...+.++|..+.... +... ....++
T Consensus 106 f~le~~~~~~e~~~q~~~~vv~~mL~~GTTt~~~f~~~~~~s~~ll~~~~~~~G~R~~igkv~m~~~~~~~p~~~~~~E~ 185 (439)
T KOG3968|consen 106 FPLEATFTNEEDARQVYQRVVKEMLRAGTTTVEYFSTLHLDSELLLARAAIRAGQRALIGKVCMDCNAHAVPKGVETTEE 185 (439)
T ss_pred eecchhhhhHHHHHHHHHHHHHHHHHcCceehhhhhccCchhHHHHHHHHHHhCCceeeeeehhccCCCCCCccchhHHH
Confidence 011112 22 22345678999999998765332223445556666666664443211 1100 111233
Q ss_pred hHHHHHHHHH---HcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-CChhhHHHHHHHHHH-cCCCCccc
Q 014320 184 VSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIE-LGITGPEG 258 (427)
Q Consensus 184 ~~~~~~~l~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~~l~~-~G~~~~~~ 258 (427)
.++..++++. +.+-......+.+.....|+.+.+....+.|+.++++++.|. |+.++++.+++..-+ .+.
T Consensus 186 si~~t~~~i~~~~~~~~~~~~~~vt~~fa~~c~k~v~~~l~~lak~~~l~~q~hIsen~~EI~~~~~ff~~~~~y----- 260 (439)
T KOG3968|consen 186 SIESTEDLIPKLEKLKREKVNPIVTPRFAASCSKGVFEELSKLAKYHNLHIQIHISENGKEIEAVKNFFPEKLSY----- 260 (439)
T ss_pred HHHHHHHHHHHHHhhccCCCCCcccccccCCCcchhHHHHHHHHHhhhhhhhhhhhhcHHHHHHHHHhhhhcccc-----
Confidence 3333333331 122222222223444566899999999999999999999996 888888877643211 000
Q ss_pred ccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeE
Q 014320 259 HALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYV 338 (427)
Q Consensus 259 ~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~ 338 (427)
.+.+.. ..+....-+-.|.+|++. +.++.++++|-.|.. ||..... .++.
T Consensus 261 ----------~~~yd~-~~lL~~ktvlaH~~hl~d----~ei~~l~k~g~svsh--CP~Sn~~-----------L~sG-- 310 (439)
T KOG3968|consen 261 ----------TDVYDK-GGLLTEKTVLAHLEHLSD----EEIELLAKRGCSVSH--CPTSNSI-----------LGSG-- 310 (439)
T ss_pred ----------hHHHHH-hcccchHhHhhhheecCc----hhHHHHHhcCCceEE--CCcchhh-----------hccC--
Confidence 011111 111111112245666644 446667778888887 6642211 1111
Q ss_pred EcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHH
Q 014320 339 MSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRL 418 (427)
Q Consensus 339 ~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~ 418 (427)
.|| ++++|+.|+++.+|||-++++...... ....+...+.......++++++++.+
T Consensus 311 -~~~---------vr~lL~~~v~VgLGtDv~~~s~l~a~r--------------~A~~~s~hL~~~~~~~~Ls~~e~L~l 366 (439)
T KOG3968|consen 311 -IPR---------VRELLDIGVIVGLGTDVSGCSILNALR--------------QAMPMSMHLACVLDVMKLSMEEALYL 366 (439)
T ss_pred -Ccc---------HHHHHhcCceEeecCCccccccHHHHH--------------HHHHHHHHHHhccCcccCCHHHHHHH
Confidence 244 466999999999999988754332211 01111112211112378999999999
Q ss_pred HchhhhcC
Q 014320 419 TSTEWGRL 426 (427)
Q Consensus 419 ~t~npA~~ 426 (427)
+|.|+|+.
T Consensus 367 ATi~GA~a 374 (439)
T KOG3968|consen 367 ATIGGAKA 374 (439)
T ss_pred Hhccchhh
Confidence 99999973
|
|
| >COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.7e-17 Score=151.27 Aligned_cols=108 Identities=25% Similarity=0.361 Sum_probs=81.4
Q ss_pred EEEECcEEEcCCCc-eeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcC--CCCChhhHHHHH
Q 014320 55 ILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM--GSETIDDFFSGQ 131 (427)
Q Consensus 55 ~~i~~~~i~~~~~~-~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~--g~~~~e~~~~~~ 131 (427)
..++|++|+++.+. .++.+.|+||+|.+|.+ .+.+.+.+++|.+|.+|+|||||.|+|...... ...+.+.+...+
T Consensus 2 ~~~~~~~i~t~~~~~~~~~v~i~dg~I~~i~~-~~~p~~~e~id~~G~~l~PGfID~hihG~gG~~~~D~~~~~~l~~i~ 80 (380)
T COG1820 2 YALKNGRIFTGHGVLDGGAVVIEDGKIEAVVP-AELPADAEIIDLKGALLVPGFIDLHIHGGGGADFMDAGSVETLETMA 80 (380)
T ss_pred ceeeccEEEcCcceEECcEEEEcCCEEEEEec-CcCCCcceeecCCCCEecccEEEEeecCcCcccccCccCHHHHHHHH
Confidence 37899999999985 56699999999999998 445677899999999999999999999876521 113456677888
Q ss_pred HHHHcCCceEEecCcCCCCC-cHHHHHHHHHHH
Q 014320 132 AAALAGGTTMHIDFVIPING-SLTAGFEAYEKK 163 (427)
Q Consensus 132 ~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~ 163 (427)
+..++.|||+++....+.+. ...+.++..++.
T Consensus 81 ~~~~~~GtTsfLpT~iT~~~e~i~~al~~~~e~ 113 (380)
T COG1820 81 EAHLRHGTTSFLPTLITASLEKIKAALRAIREA 113 (380)
T ss_pred HHhhhcCeeeeeeecccCCHHHHHHHHHHHHHH
Confidence 88999999999965433222 334444444443
|
|
| >cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-16 Score=156.40 Aligned_cols=136 Identities=24% Similarity=0.332 Sum_probs=96.6
Q ss_pred eCCCCEEeccccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCC-CCCcHHHHHHHHHHHhccccceeceec
Q 014320 97 DATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIP-INGSLTAGFEAYEKKAKNSCMDYGFHM 175 (427)
Q Consensus 97 D~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (427)
|++|++|+|||||+|+|+..+ + .+++.+ ++.++.+||||++++... .+....+.++.+.+...+..+++.+..
T Consensus 1 Da~G~~v~PG~ID~H~Hi~~~--~-~~~~~~---~~~a~~~GvTtvv~~p~~~~~v~g~~~~~~~~~~a~~~p~~~~~~~ 74 (422)
T cd01295 1 DAEGKYIVPGFIDAHLHIESS--M-LTPSEF---AKAVLPHGTTTVIADPHEIANVAGVDGIEFMLEDAKKTPLDIFWML 74 (422)
T ss_pred CCCCCEEccCEEEccCCcCCC--C-CChHHH---HHHHHCCCcEEEEeCCCCCCcCCCHHHHHHHHHHHhCCCceEEEeC
Confidence 789999999999999999886 3 234443 778999999999987432 223455667766665555565554333
Q ss_pred cc----cCC----ChhhHHHHHHHHHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChh
Q 014320 176 AI----TKW----DEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGD 239 (427)
Q Consensus 176 ~~----~~~----~~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~ 239 (427)
+. +.. .....++++++.++.++.+++.++++.+. ..+++.+.+.++.|++.|+++.+|+.+..
T Consensus 75 p~~vp~t~~e~~g~~~~~~~i~~l~~~~~vvglgE~md~~~v-~~~~~~l~~~i~~A~~~g~~v~~Ha~g~~ 145 (422)
T cd01295 75 PSCVPATPFETSGAELTAEDIKELLEHPEVVGLGEVMDFPGV-IEGDDEMLAKIQAAKKAGKPVDGHAPGLS 145 (422)
T ss_pred CCcCCCCCCCCCCCcCCHHHHHHHhcCCCCcEEEEeccCccc-cCCcHHHHHHHHHHHhCCCEEEEeCCCCC
Confidence 22 111 11136777877744689999999887643 34677899999999999999999986543
|
This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea. |
| >cd01305 archeal_chlorohydrolases Predicted chlorohydrolases | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.6e-17 Score=151.99 Aligned_cols=234 Identities=18% Similarity=0.225 Sum_probs=131.7
Q ss_pred EEeccccccccccccCcC-C-----------------------CCChhhHHHH----HHHHHcCCceEEecCcCCCCCcH
Q 014320 102 FVMPGGIDPHTHLAMEFM-G-----------------------SETIDDFFSG----QAAALAGGTTMHIDFVIPINGSL 153 (427)
Q Consensus 102 ~v~PG~ID~H~H~~~~~~-g-----------------------~~~~e~~~~~----~~~~l~~GvTtv~d~~~~~~~~~ 153 (427)
+|||||||+|+|+.+... | ..++++++.. ...++++||||+.|+........
T Consensus 1 ~v~PG~vn~H~H~~~~~~rg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~~ 80 (263)
T cd01305 1 ILIPALVNAHTHLGDSAIKEVGDGLPLDDLVAPPDGLKHRLLAQADDRELAEAMRKVLRDMRETGIGAFADFREGGVEGI 80 (263)
T ss_pred CccccceeccccHHHHHhhcCCCCCcHHHHhcCcccchHHHHHhCCHHHHHHHHHHHHHHHHhcCCeEEEEccCcchhHH
Confidence 589999999999877521 1 0223333332 34569999999999743211123
Q ss_pred HHHHHHHHHHhccccceeceeccccCCChhhHHHHHHHHHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEE
Q 014320 154 TAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMV 233 (427)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~ 233 (427)
....+..++.+.+. ..+.. ... .++. .+++. ...+. ++++++..++ ++++++.|+++|+++++
T Consensus 81 ~a~~~a~~~~g~r~---~~~~~-~~~-~~~~---~~~~~--~~~~~----~~~~~~~~~~---l~~~~~~A~~~g~~v~~ 143 (263)
T cd01305 81 ELLRRALGKLPVPF---EVILG-RPT-EPDD---PEILL--EVADG----LGLSSANDVD---LEDILELLRRRGKLFAI 143 (263)
T ss_pred HHHHHHHHhcCCCc---eEEec-cCC-cchH---HHHHH--hhccc----ccCCCCCccC---HHHHHHHHHHCCCeeEE
Confidence 34444455544442 11111 111 1111 22222 12222 3444444444 99999999999999999
Q ss_pred ec-CChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEE
Q 014320 234 HA-ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIG 312 (427)
Q Consensus 234 H~-e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~ 312 (427)
|+ |...+. |. ..++...+ .+... +.|+...+. +.++++++.|+.++.
T Consensus 144 H~~e~~~~~----------g~----------------~~i~~~~~----~~~~~-i~H~~~l~~-~~~~~la~~g~~v~~ 191 (263)
T cd01305 144 HASETRESV----------GM----------------TDIERALD----LEPDL-LVHGTHLTD-EDLELVRENGVPVVL 191 (263)
T ss_pred ecCCCCCCC----------Cc----------------hhHHHHHh----CCCCE-EEEcCCCCH-HHHHHHHHcCCcEEE
Confidence 97 443211 00 01122222 13333 678877664 678999999988876
Q ss_pred ecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCch
Q 014320 313 EPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNG 392 (427)
Q Consensus 313 ~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~ 392 (427)
||...+. .+.. .+| ++++++.|+.+++|||..+++. .+. -
T Consensus 192 --~P~sn~~-----------l~~g---~~p---------~~~l~~~Gv~v~lGtD~~~~~~-~~~--------------~ 231 (263)
T cd01305 192 --CPRSNLY-----------FGVG---IPP---------VAELLKLGIKVLLGTDNVMVNE-PDM--------------W 231 (263)
T ss_pred --ChhhHHH-----------hCCC---CCC---------HHHHHHCCCcEEEECCCCccCC-CCH--------------H
Confidence 6642111 0011 244 4569999999999999754321 111 0
Q ss_pred hhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 393 IEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 393 ~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
.+.++....... ...+++.++++++|.|+||+
T Consensus 232 ~~~~~~~~~~~~--~~~~~~~~~l~~aT~~gA~~ 263 (263)
T cd01305 232 AEMEFLAKYSRL--QGYLSPLEILRMATVNAAEF 263 (263)
T ss_pred HHHHHHHHHhcc--cccCCHHHHHHHHhhccccC
Confidence 123332222111 12579999999999999986
|
These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases. |
| >cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-15 Score=148.32 Aligned_cols=228 Identities=25% Similarity=0.251 Sum_probs=132.9
Q ss_pred EECcEEEcCCC-c--eeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCc---CCCCChhhHHH-
Q 014320 57 IKGGTVVNAHH-Q--QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEF---MGSETIDDFFS- 129 (427)
Q Consensus 57 i~~~~i~~~~~-~--~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~---~g~~~~e~~~~- 129 (427)
|+|++|+++.. . .+.+|+|+||||++|++.. .+.++||++|++|+|||||+|+|+.... .....+|+-+.
T Consensus 1 Ikng~V~d~~~~~~~~~~dI~IedGkIv~Vg~~~---~~~~vID~~G~~VmPGfID~HtH~~gg~~~~~r~~~pe~~~~~ 77 (541)
T cd01304 1 IKNGTVYDPLNGINGEKMDIFIRDGKIVESSSGA---KPAKVIDASGKVVMAGGVDMHSHIAGGKVNVGRILRPEDHRRD 77 (541)
T ss_pred CEEEEEEcCCCcccccccEEEEECCEEEEEccCC---CCCeEEECCCCEEECCeeeeeeCccccccccccccChhhhhcc
Confidence 57899999765 2 5789999999999998743 2358999999999999999999987641 01122222221
Q ss_pred ---------------------HHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceeccccCC-------C
Q 014320 130 ---------------------GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKW-------D 181 (427)
Q Consensus 130 ---------------------~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 181 (427)
....+++.|.||+++...++.. .+.. -.+...-..++.+...-+... .
T Consensus 78 ~~~~~~~~~~~~g~~~pst~~tgy~ya~mGytt~~e~a~~p~~-a~h~---h~e~~~~p~~d~~~~~~~gnn~~~~~~~~ 153 (541)
T cd01304 78 PVPKGALRRAGVGFSVPSTLATGYRYAEMGYTTAFEAAMPPLN-ARHT---HEEMADTPILDKGAYPLLGNNWFVLEYLR 153 (541)
T ss_pred ccccccccccCCCccCCCchHhhhHHHhcCcceeecccCCccc-chhh---hHHhccCccccccceEEecchHHHHHHHh
Confidence 1134577899999987655432 1111 122222233443322111000 0
Q ss_pred hhhHHHHHHHH----HHcCCCeEEEEEecCC------------------CccCC-HHHHHHHHHHHHHcCCcEEEe--cC
Q 014320 182 EVVSDEMEVMV----KEKGINSFKFFMAYKG------------------SFMIN-DELLIEGFKRCKSLGALAMVH--AE 236 (427)
Q Consensus 182 ~~~~~~~~~l~----~~~g~~~ik~~~~~~~------------------~~~~~-~~~l~~~~~~a~~~g~~v~~H--~e 236 (427)
+...+.+..++ +..+.-++|+. .+.| .+.++ .+.++.+.+..+++|+|..+| |.
T Consensus 154 ~~~~~~~~~~vaw~l~~tk~~giK~v-npgG~~a~~~~~~~~~~d~~~~~~~vtp~~ii~~l~~~~~~lg~ph~iH~h~n 232 (541)
T cd01304 154 DGDMEKLAAYVAWTLKASKGYGIKVV-NPGGTEAWGWGQNVLSLDDPVPYFDITPREILKGLAEANEELGLPHSIHVHCN 232 (541)
T ss_pred cCCHHHHHHHHHHHHHhccceEEEEE-CCCchhhhccCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCceEEEEccc
Confidence 11122233322 22344567764 2211 13344 456777888888999877666 43
Q ss_pred ChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCC-----CEEEEcCCC-----------HHHHHHH
Q 014320 237 NGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNT-----PLYVVHVMS-----------MDAMEEI 300 (427)
Q Consensus 237 ~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~-----~~~i~H~~~-----------~~~~~~i 300 (427)
+- | .|.- .+...+.+++++.... .+|+.|++. ....+.+
T Consensus 233 nl-------------g----------~pgn--~~~t~~t~~~~~~~~~~~~~~~~h~tH~qfhsyg~~~~~~~~s~a~~i 287 (541)
T cd01304 233 NL-------------G----------VPGN--YETTLETMKAAEGVKPDPRRQVLHLTHVQFHSYGGTSWRDFESGAERI 287 (541)
T ss_pred cC-------------C----------CCCc--HHHHHHHHHHhhcCCCccccceeEeeeeeEEeeccCCcccHhHHHHHH
Confidence 32 1 1111 2333555666655543 489999951 3456778
Q ss_pred HHHhhcCCCEEEecCcc
Q 014320 301 AKARKAGQRVIGEPVVS 317 (427)
Q Consensus 301 ~~~~~~G~~v~~~~~p~ 317 (427)
..+..++-+|++++.+.
T Consensus 288 ~~~~n~~~~it~D~G~v 304 (541)
T cd01304 288 ADYVNANDHVTIDVGQV 304 (541)
T ss_pred HHHHHcCCCEEEEeCce
Confidence 88888888899887665
|
FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen. |
| >cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.5e-16 Score=148.87 Aligned_cols=273 Identities=20% Similarity=0.114 Sum_probs=143.6
Q ss_pred CCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCC-------------Chh--------hHHHHHHHHH
Q 014320 77 DGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSE-------------TID--------DFFSGQAAAL 135 (427)
Q Consensus 77 ~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~-------------~~e--------~~~~~~~~~l 135 (427)
||||++|++....+.+.++||++|++|+|||||+|+|++....+.. +++ ........++
T Consensus 1 ~gkI~~i~~~~~~~~~~~vid~~g~~v~Pg~id~h~h~~~~~~~~~~~~~d~~e~~~~~~p~~~~~d~~~~~~~~~~~a~ 80 (359)
T cd01309 1 DGKIVAVGAEITTPADAEVIDAKGKHVTPGLIDAHSHLGLDEEGGVRETSDANEETDPVTPHVRAIDGINPDDEAFKRAR 80 (359)
T ss_pred CCEEEEEcCCCCCCCCCeEEeCCCCEEcCcEEecccccCccccCCCcCcCCccccCCCCCceeEeecccCCCCHhHHHHH
Confidence 7999999987665667899999999999999999999976522110 000 0012356788
Q ss_pred cCCceEEecCcCCCCC-cHHH-HHH----HHHHHhccc--cceecee--ccccC-------CCh-hhHHHHHHHHH---H
Q 014320 136 AGGTTMHIDFVIPING-SLTA-GFE----AYEKKAKNS--CMDYGFH--MAITK-------WDE-VVSDEMEVMVK---E 194 (427)
Q Consensus 136 ~~GvTtv~d~~~~~~~-~~~~-~~~----~~~~~~~~~--~~~~~~~--~~~~~-------~~~-~~~~~~~~l~~---~ 194 (427)
++|||++.-.....+. .... .++ ...+...+. .+.+.+. ..... ... .....+++... +
T Consensus 81 ~~GvT~~~v~p~~~~~~gg~~~~i~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~~~~~~p~trmg~~~~lr~~~~~a~~ 160 (359)
T cd01309 81 AGGVTTVQVLPGSANLIGGQGVVIKTDGGTIEDMFIKAPAGLKMALGENPKRVYGGKGKEPATRMGVAALLRDAFIKAQE 160 (359)
T ss_pred hcCceEEEecCCCCCcccceEEEEECCCCCHHHhcccCCceeEEecCCCCcccccccCCCccchHHHHHHHHHHHHHHHH
Confidence 9999999755322111 0000 000 000111111 1111111 00000 000 01111222110 1
Q ss_pred cCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHH
Q 014320 195 KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTR 274 (427)
Q Consensus 195 ~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~ 274 (427)
......+ +..........+..+..++..++.. +++.+|+..... +.+
T Consensus 161 y~~~~~~-~~~~~~~~~~~d~~l~~l~~~~~~~-~~v~vHa~~~~~-------------------------------i~~ 207 (359)
T cd01309 161 YGRKYDL-GKNAKKDPPERDLKLEALLPVLKGE-IPVRIHAHRADD-------------------------------ILT 207 (359)
T ss_pred HHHHhhh-hhhcccCCCCCCccHHHHHHHHcCC-eeEEEEeCCHHH-------------------------------HHH
Confidence 1000000 0000000111233455566555433 899999876543 344
Q ss_pred HHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHH
Q 014320 275 AIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQA 354 (427)
Q Consensus 275 ~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~ 354 (427)
+++++++.+.++.+.|+... .+.++++++.|+.+.. +|.+....... +. ......+.+
T Consensus 208 ~l~~~~e~g~~~~i~H~~~~--~~~~~~la~~gv~v~~--~P~~~~~~~~~----------------~~--~~~~~~~~~ 265 (359)
T cd01309 208 AIRIAKEFGIKITIEHGAEG--YKLADELAKHGIPVIY--GPTLTLPKKVE----------------EV--NDAIDTNAY 265 (359)
T ss_pred HHHHHHHcCCCEEEECchhH--HHHHHHHHHcCCCEEE--CccccccccHH----------------Hh--hcchhhHHH
Confidence 55666667788889999765 4677888889988775 56432211100 00 001123556
Q ss_pred HHhcC-CceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 355 ALATG-ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 355 ~l~~G-~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
+++.| +.++++||+ |+..... +.... ......+++.+++++++|.|||++
T Consensus 266 l~~aGGv~valgsD~-~~~~~~~--------------------l~~~~-~~a~~~gl~~~~al~~~T~n~A~~ 316 (359)
T cd01309 266 LLKKGGVAFAISSDH-PVLNIRN--------------------LNLEA-AKAVKYGLSYEEALKAITINPAKI 316 (359)
T ss_pred HHHcCCceEEEECCC-CCccchh--------------------HHHHH-HHHHHcCCCHHHHHHHHHHHHHHH
Confidence 78887 999999998 4321111 11111 111235699999999999999985
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-15 Score=143.78 Aligned_cols=280 Identities=22% Similarity=0.228 Sum_probs=147.0
Q ss_pred eCCCCEEeccccccccc--cccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceecee
Q 014320 97 DATGKFVMPGGIDPHTH--LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFH 174 (427)
Q Consensus 97 D~~g~~v~PG~ID~H~H--~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (427)
|++|++|+|||||+|+| ......+....+......+.++.+|+|++++.... ........... .......
T Consensus 1 D~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~G~tt~~~~~~~---~~~~~~~~~~~-----~~~~~~~ 72 (304)
T PF13147_consen 1 DASGKYVLPGLIDLHVHGPLGRSEDGAPWAEQAAAASAAALAGGVTTVVDMPGT---NPEELNRARRR-----GAGYPGS 72 (304)
T ss_dssp E-TTSEEEE-EEEEEEECCSSCETTTEEHSSHHHHHHHHHHHTTEEEEEESSSS---SHHHHHHHHHH-----ESEEEEE
T ss_pred CCCCCEEccceeeeeeCCCcCCCCCCccchhhHHHHHHHHHhCCEeEEecCCCC---CchhhHHHHhh-----ccccccc
Confidence 89999999999999999 33332222333445566788899999999985322 12222222221 1111111
Q ss_pred ccccCCChhhHHHHHHHHHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcC-CcEEEecCChhhHHHHHHHHHHcCC
Q 014320 175 MAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG-ALAMVHAENGDAVFEGQKRMIELGI 253 (427)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g-~~v~~H~e~~~~~~~~~~~l~~~G~ 253 (427)
.............++.+.......++...+. ....+.+....+.+.+.+ +.+..|+... ........-.+...
T Consensus 73 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 146 (304)
T PF13147_consen 73 --GAGPRGTTIEELEALVDLIAAEGVGFVAAYN---GIEGPGLQAAIRAAHRAGVIKVVGHSPAD-GIEGAIAEGLDAME 146 (304)
T ss_dssp --CESCCHHHHHHHHHHHHHHHHTEEEEESSST---HHHHHHHHHHHHHHHHHTHEEEEEECHHH-HHHHHHHHHHHTTH
T ss_pred --cccccccchHHHHHHHHHHhhcCcceeeccc---cCCHHHHHHHHHHHHhcCCeeeecccchh-hHHHHHHhcccchh
Confidence 1111222233333333222233444433221 345677888888888999 4444454333 22111111000000
Q ss_pred CCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCccc
Q 014320 254 TGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVT 333 (427)
Q Consensus 254 ~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~ 333 (427)
. ....................+..+++.........+.+...+..++...+.. ........ .
T Consensus 147 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~----~-- 208 (304)
T PF13147_consen 147 H--------ILPHEVAEALHLAEALAQGAGPGLHCHVASDDATAEGVAIAHGFGLPPTPLH----LLARDAAA----A-- 208 (304)
T ss_dssp H--------STHHHHHHHHHHHHHHHHHHTHCEEEEETSSHHHHHHHHHHHHTTHEEEEEE----HHHHHHHH----H--
T ss_pred h--------hhhhhHHHHHHHHHHhhhccccchhhhhhhhhhhhHHHHHHHhhccccchHH----hhHHHHHh----c--
Confidence 0 0111112222222333333455555555555544333555555565544422 11111000 0
Q ss_pred CceeEEcCCCC--CcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCC
Q 014320 334 AAKYVMSPPIR--ASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQIS 411 (427)
Q Consensus 334 ~~~~~~~pplr--~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~ 411 (427)
+..++.+||++ ....+..+++++++|+.++++|||.++... +....+..+. ......+++
T Consensus 209 ~~~~~~~p~~~~~~~~~~~~~~~l~~~Gv~~~l~sD~~~~~~~-----------------~~~~~~~~~~-~~~~~~gl~ 270 (304)
T PF13147_consen 209 GIRFKVLPPLRLDLREDRAALRELLEAGVPVALGSDHAPSSTE-----------------GSGDLLHEAM-RLAVRAGLS 270 (304)
T ss_dssp GGGGEESSCHHHHTHHHHHHHHHHHHTTSSEEEEE-BBTTTTT-----------------CTTTHHHHHH-HHHHHTSST
T ss_pred CceeeeCCCccccchhhhHHHHHHHhCCCeEEEEcCCcccccc-----------------cccccchhhh-hHHhhcCCC
Confidence 24677889988 788899999999999999999999876532 0112333333 233347899
Q ss_pred HHHHHHHHchhhhcC
Q 014320 412 VTDYVRLTSTEWGRL 426 (427)
Q Consensus 412 l~~~v~~~t~npA~~ 426 (427)
++++++++|.|||++
T Consensus 271 ~~~al~~~T~~pA~~ 285 (304)
T PF13147_consen 271 PEEALRAATSNPARI 285 (304)
T ss_dssp HHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999985
|
... |
| >TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.4e-14 Score=139.92 Aligned_cols=94 Identities=33% Similarity=0.470 Sum_probs=69.2
Q ss_pred EEEECcEEEcCCC-c--eeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCc--CC-CCChhhHH
Q 014320 55 ILIKGGTVVNAHH-Q--QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEF--MG-SETIDDFF 128 (427)
Q Consensus 55 ~~i~~~~i~~~~~-~--~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~--~g-~~~~e~~~ 128 (427)
++|+|++|+++.. . ..++|+|+||+|++|++..+ .+.++||++|++|+|||||+|+|+..+. .+ ...++++.
T Consensus 2 ~iIkng~I~dp~~~~~~~~~dI~IedGkIveIg~~~~--~~~eVIDa~G~vVmPGfID~HvHg~gG~~~~~R~~~pE~~~ 79 (556)
T TIGR03121 2 ILIKNGTVYDPANGIDGEVMDIFIRDGKIVEPVSGGT--KPAKVIDASGKLVMAGGVDSHTHIAGPKVNVGRLLRPEDHR 79 (556)
T ss_pred EEEEeEEEEcCCCCccccccEEEEECCEEEEecCCCC--CCCeEEECCCCEEEeCEEeeeECCCccccccccccCHHHHh
Confidence 5899999999854 2 35799999999999986433 2357999999999999999999998741 11 12233332
Q ss_pred H----------------------HHHHHHcCCceEEecCcCCCC
Q 014320 129 S----------------------GQAAALAGGTTMHIDFVIPIN 150 (427)
Q Consensus 129 ~----------------------~~~~~l~~GvTtv~d~~~~~~ 150 (427)
. ....+++.|+||++|...++.
T Consensus 80 ~~~~~~~~~~r~Gtt~~lPTt~tt~y~ya~mGyTt~~eaa~~p~ 123 (556)
T TIGR03121 80 RDPEPRTGLTRAGSGFSVPSTYATGYRYARMGYTTVFEAAVPPL 123 (556)
T ss_pred hcchhhhhhcCCCcceEehhHhHHHHHHHhCCccEEecCCCCcc
Confidence 1 224568899999999876543
|
Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably. |
| >cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-14 Score=134.59 Aligned_cols=247 Identities=21% Similarity=0.212 Sum_probs=138.1
Q ss_pred ccccccccccCcCCC------------CC----hhhHHHHHHHHHcCCceEEecCcCCCCC-----cHHHHHHHHHHH-h
Q 014320 107 GIDPHTHLAMEFMGS------------ET----IDDFFSGQAAALAGGTTMHIDFVIPING-----SLTAGFEAYEKK-A 164 (427)
Q Consensus 107 ~ID~H~H~~~~~~g~------------~~----~e~~~~~~~~~l~~GvTtv~d~~~~~~~-----~~~~~~~~~~~~-~ 164 (427)
|||+|+|+.++.... .+ .+........++++||||++++...... .....++...+. +
T Consensus 1 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvttv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (275)
T cd01292 1 FIDTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDMGSTPPPTTTKAAIEAVAEAARASAG 80 (275)
T ss_pred CcccchhhHHHHHccCCCccccccccccCHHHHHHHHHHHHHHHHhcCceEEEeeEeecCccccchHHHHHHHHHHHhcC
Confidence 799999988752111 11 2234455677899999999998654332 122222333222 1
Q ss_pred ccccceeceeccccCCCh----hhHHHHHHHHHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhh
Q 014320 165 KNSCMDYGFHMAITKWDE----VVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA 240 (427)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~ 240 (427)
.+..+..+.+.......+ ...+.+.+.. ..|+.++++...... ...+.+.++++++.|+++|+++.+|+.+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~gi~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~i~~H~~~~~~ 158 (275)
T cd01292 81 IRVVLGLGIPGVPAAVDEDAEALLLELLRRGL-ELGAVGLKLAGPYTA-TGLSDESLRRVLEEARKLGLPVVIHAGELPD 158 (275)
T ss_pred eeeEEeccCCCCccccchhHHHHHHHHHHHHH-hcCCeeEeeCCCCCC-CCCCcHHHHHHHHHHHHcCCeEEEeeCCccc
Confidence 121111111111000011 1223333322 246778876554332 1247899999999999999999999854321
Q ss_pred HHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCcccee
Q 014320 241 VFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLV 320 (427)
Q Consensus 241 ~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~ 320 (427)
. ...+.+.++.... +.++.+.|+...+. +.++.+++.|+ ..++||.+..
T Consensus 159 ~---------------------------~~~~~~~~~~~~~-~~~~~~~H~~~~~~-~~~~~~~~~g~--~~~~~~~~~~ 207 (275)
T cd01292 159 P---------------------------TRALEDLVALLRL-GGRVVIGHVSHLDP-ELLELLKEAGV--SLEVCPLSNY 207 (275)
T ss_pred C---------------------------ccCHHHHHHHHhc-CCCEEEECCccCCH-HHHHHHHHcCC--eEEECCcccc
Confidence 0 0011222233222 57889999987532 55777777775 4456887554
Q ss_pred eCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHH
Q 014320 321 LDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLV 400 (427)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~ 400 (427)
+.. +.......++++++.|..+++|||+.+...... ++..
T Consensus 208 ~~~--------------------~~~~~~~~~~~~~~~g~~~~lgTD~~~~~~~~~--------------------~~~~ 247 (275)
T cd01292 208 LLG--------------------RDGEGAEALRRLLELGIRVTLGTDGPPHPLGTD--------------------LLAL 247 (275)
T ss_pred ccc--------------------CCcCCcccHHHHHHCCCcEEEecCCCCCCCCCC--------------------HHHH
Confidence 321 001112346778999999999999855421111 1111
Q ss_pred HHHHHh--cCCCCHHHHHHHHchhhhcC
Q 014320 401 WDTMVE--SGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 401 ~~~~~~--~~~l~l~~~v~~~t~npA~~ 426 (427)
+..++. ..++++.++++++|.||||.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~t~n~a~~ 275 (275)
T cd01292 248 LRLLLKVLRLGLSLEEALRLATINPARA 275 (275)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhccccCC
Confidence 111111 22389999999999999984
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others. |
| >PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-15 Score=110.56 Aligned_cols=67 Identities=51% Similarity=0.671 Sum_probs=47.7
Q ss_pred EEEeCCeEEEeeCCCCCC-CCceEEeCCCCEEeccccccccccccCcCCCCChhhHHHHHHHHHcCCceEE
Q 014320 73 VYVEDGIVVAVQPNINVG-DDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMH 142 (427)
Q Consensus 73 i~i~~g~I~~vg~~~~~~-~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv 142 (427)
|+|+||||++|++....+ ++.++||++|++|+|||||+|+|+..+ .. ...........++++||||+
T Consensus 1 V~I~~g~I~~v~~~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~--~~-~~~~~~~~~~~~l~~GvTTV 68 (68)
T PF13594_consen 1 VLIEDGKIVAVGPDSELPADAAEVIDAKGKYVMPGFIDMHTHLGEP--GW-QSLDPETEAAAALAGGVTTV 68 (68)
T ss_dssp EEEETTEEEEEESSCCTTSTCCEEEEETTCEEEE-EEEEEE-TTTT--CE-GGCTCHHHHHHHHHTTEEEE
T ss_pred CEEECCEEEEeCCCCCCCCCCCEEEECCCCEEeCCeEeeeeccccc--cc-cccchhhHHHHHHCcceeeC
Confidence 789999999997654433 456789999999999999999997643 11 11111334566789999997
|
... |
| >COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=7e-13 Score=118.50 Aligned_cols=284 Identities=17% Similarity=0.151 Sum_probs=173.7
Q ss_pred EEeccccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCC-cHHHHHHHHHHHhcc-ccc--eeceeccc
Q 014320 102 FVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN-SCM--DYGFHMAI 177 (427)
Q Consensus 102 ~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~-~~~--~~~~~~~~ 177 (427)
+-+..-.|.|+|+.+. . +.....-..+-++.-.+-|.+-.+. ...+...++++.-.. ..- .+-..+..
T Consensus 5 l~i~rPdDwHlHLRdg--~------mL~~V~p~ts~~f~rAiIMPNL~pPvtt~~~a~aYr~rIl~a~p~~~~F~PLMtl 76 (344)
T COG0418 5 LTIRRPDDWHLHLRDG--A------MLKAVVPYTSRGFGRAIIMPNLVPPVTTVADALAYRERILKAVPAGHRFTPLMTL 76 (344)
T ss_pred eeccCccceeEEecCc--c------HHHHhhhhhhhhcceEEEcCCCCCCcccHHHHHHHHHHHHHhCcCCCCCceeEEE
Confidence 4467788999999875 1 1111112223355556666543332 223333344443321 111 11111111
Q ss_pred cCCChhhHHHHHHHHHHcC-CCeEEEEEec----CCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcC
Q 014320 178 TKWDEVVSDEMEVMVKEKG-INSFKFFMAY----KGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELG 252 (427)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~g-~~~ik~~~~~----~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G 252 (427)
.-.+....+++++.. ..| +.++|.|-.. +.....+-+.+..+++.+++.|+++.+|.|-........+
T Consensus 77 YLtd~~~peel~~a~-~~g~i~a~KlYPaGaTTNS~~GV~~~~~~~pvle~Mq~~gmpLlvHGEvt~~~vDifd------ 149 (344)
T COG0418 77 YLTDSTTPEELEEAK-AKGVIRAVKLYPAGATTNSDSGVTDIEKIYPVLEAMQKIGMPLLVHGEVTDAEVDIFD------ 149 (344)
T ss_pred EecCCCCHHHHHHHH-hcCcEEEEEeccCCccccCcCCcCcHHHHHHHHHHHHHcCCeEEEecccCCccccchh------
Confidence 111222345566655 555 6788988653 1112235678889999999999999999875432211100
Q ss_pred CCCcccccccCCHHHHHHHHHHHHHHHHh--cCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCC
Q 014320 253 ITGPEGHALSRPPLLEGEATTRAIRLAEF--VNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSD 330 (427)
Q Consensus 253 ~~~~~~~~~~~p~~~e~~a~~~~~~~~~~--~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~ 330 (427)
.|..-+...++-.++ -..++.++|+++.++++.++. .+.++.+..+||||+++.++..-.+
T Consensus 150 --------------rE~~Fi~~vl~pl~~~fP~LKIV~EHiTT~dav~~v~~---~~~nlaATIT~hHL~~nrnd~l~Gg 212 (344)
T COG0418 150 --------------REAAFIESVLEPLRQRFPKLKIVLEHITTKDAVEYVKD---ANNNLAATITPHHLLLNRNDMLVGG 212 (344)
T ss_pred --------------hHHHHHHHHHHHHHhhCCcceEEEEEeccHHHHHHHHh---cCcceeeEeehhheeeehhhhhcCC
Confidence 112223333332222 246799999999988766654 4556999999999999988765323
Q ss_pred cccCceeEEcCCCCCcccHHHHHHHHhcCC-ceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCC
Q 014320 331 FVTAAKYVMSPPIRASGHNKALQAALATGI-LQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQ 409 (427)
Q Consensus 331 ~~~~~~~~~~pplr~~~~~~~l~~~l~~G~-~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~ 409 (427)
.+ ..+.|.|-++.+.||++|.++.-+|- ...+|||.+||....|.. .+...|+-+.-..++.+- + +-+..
T Consensus 213 i~--Ph~fClPilKr~~hr~AL~~aa~sg~~kfFlGtDSAPH~~~~Ke~-----~cgcAG~fsap~al~~~A-e-vFE~~ 283 (344)
T COG0418 213 IR--PHLFCLPILKRETHREALREAATSGHPKFFLGTDSAPHARSRKES-----ACGCAGIFSAPFALPLYA-E-VFEEE 283 (344)
T ss_pred CC--cceeeeccccchhhHHHHHHHHhcCCCcEEecCCCCCCccccccc-----ccccccccccHhHHHHHH-H-HHHHh
Confidence 22 46779999999999999999888777 499999999999888753 233455555555566543 2 23444
Q ss_pred CCHHHHHHHHchhhhcC
Q 014320 410 ISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 410 l~l~~~v~~~t~npA~~ 426 (427)
=.++.+-..+|.|+.++
T Consensus 284 naL~~LeaF~S~nGp~f 300 (344)
T COG0418 284 NALDNLEAFASDNGPKF 300 (344)
T ss_pred cHHHHHHHHHhhcCcce
Confidence 67777888899998765
|
|
| >COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.8e-13 Score=126.10 Aligned_cols=85 Identities=27% Similarity=0.394 Sum_probs=67.1
Q ss_pred CccEEEECcEEEcCCC--ceeeeEEEeCCeEEEeeCCCCCC-CCceEEeCCCCEEeccccccccccccCcCCCCChhhHH
Q 014320 52 SSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVG-DDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFF 128 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~--~~~~~i~i~~g~I~~vg~~~~~~-~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~ 128 (427)
.+|++|+++.|+|+.+ ....+|.|+||+|++|+...... ...++||+.|++|.|||||+|+|..... ..++.
T Consensus 5 ~YD~ViR~g~ifDGtGnp~f~tdvgIrDGvIaav~kg~~dg~~~~eevDaagriVaPGFIDvHtHyD~~~--~~d~~--- 79 (579)
T COG3653 5 TYDVVIRDGLIFDGTGNPPFTTDVGIRDGVIAAVAKGALDGTGCPEEVDAAGRIVAPGFIDVHTHYDAEV--LLDPG--- 79 (579)
T ss_pred eeeEEEeeceEEeCCCCCccccccccccceEEEEecccccccCCCeeecccCcEecccEEEeeeccccee--eecCC---
Confidence 5799999999999876 45679999999999999865432 2448999999999999999999976431 11111
Q ss_pred HHHHHHHcCCceEEe
Q 014320 129 SGQAAALAGGTTMHI 143 (427)
Q Consensus 129 ~~~~~~l~~GvTtv~ 143 (427)
.+..+.+|||||+
T Consensus 80 --l~psv~hGVTTVv 92 (579)
T COG3653 80 --LRPSVRHGVTTVV 92 (579)
T ss_pred --ccchhhcCeeEEE
Confidence 4556889999997
|
|
| >cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex | Back alignment and domain information |
|---|
Probab=99.55 E-value=4e-13 Score=126.76 Aligned_cols=236 Identities=18% Similarity=0.164 Sum_probs=136.9
Q ss_pred eccccccccccccC----cCCCC--ChhhHHHHHHHHHcCCceEEecCcCCC----C--C--cHHHHHHHHHHHh--ccc
Q 014320 104 MPGGIDPHTHLAME----FMGSE--TIDDFFSGQAAALAGGTTMHIDFVIPI----N--G--SLTAGFEAYEKKA--KNS 167 (427)
Q Consensus 104 ~PG~ID~H~H~~~~----~~g~~--~~e~~~~~~~~~l~~GvTtv~d~~~~~----~--~--~~~~~~~~~~~~~--~~~ 167 (427)
+||+||.|+--.+. -.|.. ....+....+..+.+||||+.|.-... . . .....++...... ...
T Consensus 1 lPG~vdlH~D~~E~~~~PRp~v~~~~~~a~~~~d~~~~a~GiTT~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (325)
T cd01306 1 LPGLIDLHTDNLEKHVMPRPGVDWPMDIALAAHDRQLAAAGITTVFDALSFGDEEGGRRRLRNLRKLIDAIRELHARGVL 80 (325)
T ss_pred CCCeEEecCcchhcccCCCCCCCCCHHHHHHHHHHHHHhcCcccceeeeEeccccCCcccHHHHHHHHHHHHHhhhCCcc
Confidence 69999999964332 11211 122334455677999999999853221 1 1 2223333333332 234
Q ss_pred cceeceeccccCCChhhHHHHHHHHHHcCCCeEEEEEecC-C-----------------------------------Ccc
Q 014320 168 CMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYK-G-----------------------------------SFM 211 (427)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~~~-~-----------------------------------~~~ 211 (427)
..+..+|........+..+.+.++++...+..+ .+++.. + ...
T Consensus 81 ~~d~~~hlR~E~~~~~~~~~~~~~~~~~~v~lv-s~~dH~pg~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (325)
T cd01306 81 RADHRLHLRCELADPAVLPELESLMADPRVHLV-SLMDHTPGQRQFRDLEKYREYYAKKYGLSDEEVEEAILERKARAAA 159 (325)
T ss_pred hhhcceEEEEeecCccHHHHHHHHhcCCCcCEE-EEeCCCCccccccCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhh
Confidence 556666665555556667777777733334433 344410 0 012
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEecCC-hhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEc
Q 014320 212 INDELLIEGFKRCKSLGALAMVHAEN-GDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH 290 (427)
Q Consensus 212 ~~~~~l~~~~~~a~~~g~~v~~H~e~-~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H 290 (427)
.+.+.++++++.|+++|+++.+|... .+.+ +... +.|+.. +.|
T Consensus 160 ~~~~~~~~iv~~A~~~gl~vasH~d~~~~~v----~~a~-------------------------------~~Gv~~-~E~ 203 (325)
T cd01306 160 YAPANRSELAALARARGIPLASHDDDTPEHV----AEAH-------------------------------ELGVVI-SEF 203 (325)
T ss_pred cCHHHHHHHHHHHHHCCCcEEEecCCChHHH----HHHH-------------------------------HCCCee-ccC
Confidence 34677888888999999999999743 3222 1122 233332 345
Q ss_pred CCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCC
Q 014320 291 VMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCA 370 (427)
Q Consensus 291 ~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p 370 (427)
..+ .+.++.+++.|+.|.+. .|. +.. .++ ...+..++++++.|+.++++||+.|
T Consensus 204 p~t---~e~a~~a~~~G~~vv~g-apn-~lr-----------g~s----------~~g~~~~~~ll~~Gv~~al~SD~~p 257 (325)
T cd01306 204 PTT---LEAAKAARELGLQTLMG-APN-VVR-----------GGS----------HSGNVSARELAAHGLLDILSSDYVP 257 (325)
T ss_pred CCC---HHHHHHHHHCCCEEEec-Ccc-ccc-----------Ccc----------ccccHhHHHHHHCCCeEEEEcCCCc
Confidence 433 35577788889887752 221 100 000 0112347889999999999999976
Q ss_pred CChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 371 FNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
... +...+ .+....+++++++++++|.|||++
T Consensus 258 ~sl-----------------------l~~~~-~la~~~gl~l~eAl~~aT~nPA~~ 289 (325)
T cd01306 258 ASL-----------------------LHAAF-RLADLGGWSLPEAVALVSANPARA 289 (325)
T ss_pred HhH-----------------------HHHHH-HHHHHcCCCHHHHHHHHhHHHHHH
Confidence 421 11223 344456799999999999999985
|
C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria. |
| >PRK06886 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.7e-12 Score=121.48 Aligned_cols=253 Identities=15% Similarity=0.154 Sum_probs=135.0
Q ss_pred ccccccccccccCcC-----------CC--------------CChhhHH----HHHHHHHcCCceEEecCcCCCCC---c
Q 014320 105 PGGIDPHTHLAMEFM-----------GS--------------ETIDDFF----SGQAAALAGGTTMHIDFVIPING---S 152 (427)
Q Consensus 105 PG~ID~H~H~~~~~~-----------g~--------------~~~e~~~----~~~~~~l~~GvTtv~d~~~~~~~---~ 152 (427)
-||||.|+|+...+. |. .+.++++ ...+.++..|||.++.+....+. .
T Consensus 20 ~gfv~~H~HlDk~~~~~~~~~~~~~~g~l~e~i~~~~~~k~~~t~~dv~~Ra~~~l~~~~~~Gtt~iRtHvdvd~~~~l~ 99 (329)
T PRK06886 20 GGWVNAHAHADRAFTMTPEKIAIYHYANLQQKWDLVDEVKRNSTVEDYYARFSQAIELMISQGVTAFGTFVDIDPICEDR 99 (329)
T ss_pred cCCccccccccccccCCCccccccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcCcccEeeeeccCCCcccc
Confidence 389999999987531 10 0222332 23455789999999876533221 2
Q ss_pred HHHHHHHHHHHh-cccccee-cee-ccccCCChhhHHHHHHHHHHcCCCeEEEEEecCC---CccCCHHHHHHHHHHHHH
Q 014320 153 LTAGFEAYEKKA-KNSCMDY-GFH-MAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKG---SFMINDELLIEGFKRCKS 226 (427)
Q Consensus 153 ~~~~~~~~~~~~-~~~~~~~-~~~-~~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~~~~---~~~~~~~~l~~~~~~a~~ 226 (427)
..+.+.+.++.- .+.-+.+ .|. .+.. .....+.+.+.. +. ++.+.-. |+. ....+.+.++.+++.|++
T Consensus 100 ~~~a~~~~r~~~~~~idlq~vafPq~g~~--~~~~~~l~~~al-~~-advvGGi--P~~~~~~~~~~~e~l~~~~~lA~~ 173 (329)
T PRK06886 100 AIIAAHKAREVYKHDIILKFANQTLKGVI--EPTAKKWFDIGS-EM-VDMIGGL--PYRDELDYGRGLEAMDILLDTAKS 173 (329)
T ss_pred HHHHHHHHHHHhcCcceEEEEecChhhcc--CccHHHHHHHHH-Hh-CCEEeCc--cCCcCCCCCCCHHHHHHHHHHHHH
Confidence 333333333322 2222222 111 1111 122223344443 23 4443322 221 123568899999999999
Q ss_pred cCCcEEEec-CChhhHHHHHHH----HHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHH-----
Q 014320 227 LGALAMVHA-ENGDAVFEGQKR----MIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDA----- 296 (427)
Q Consensus 227 ~g~~v~~H~-e~~~~~~~~~~~----l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~----- 296 (427)
+|+++++|+ |..+.....++. ..+.|+ ..++.+.|+.....
T Consensus 174 ~g~~Id~Hlde~~~~~~~~le~l~~~~~~~Gl-----------------------------~grV~~sH~~~L~~~~~~~ 224 (329)
T PRK06886 174 LGKMVHVHVDQFNTPKEKETEQLCDKTIEHGM-----------------------------QGRVVAIHGISIGAHSKEY 224 (329)
T ss_pred cCCCeEEeECCCCchhHHHHHHHHHHHHHcCC-----------------------------CCCEEEEEeccccCcChhh
Confidence 999999997 544332222211 112222 23788999876432
Q ss_pred -HHHHHHHhhcCCCEEEecCccc-eeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCC--CCC
Q 014320 297 -MEEIAKARKAGQRVIGEPVVSG-LVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHC--AFN 372 (427)
Q Consensus 297 -~~~i~~~~~~G~~v~~~~~p~~-l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~--p~~ 372 (427)
.+.++.+++.|+.|++ ||.. ++++..... . ....-.+| +.++++.|+++++|||+. ||.
T Consensus 225 ~~~~i~~La~agi~Vv~--~P~snl~l~~~~~~---~---p~~rGv~p---------v~eL~~aGV~V~lGtDnv~D~~~ 287 (329)
T PRK06886 225 RYRLYQKMREADMMVIA--CPMAWIDSNRKEDL---M---PFHNALTP---------ADEMIPEGITVALGTDNICDYMV 287 (329)
T ss_pred HHHHHHHHHHcCCeEEE--Cchhhhhhcccccc---C---cCCCCCCC---------HHHHHHCCCeEEEecCCCcccCC
Confidence 3468889999998887 6643 222211100 0 00011233 567999999999999975 332
Q ss_pred hhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 373 STQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 373 ~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
+ .|...+-..+-++. .. .+..++.++++++|.|+||.
T Consensus 288 p--------------~g~~Dmle~~~l~~-~~--~~~~~~~~~l~maT~~gAra 324 (329)
T PRK06886 288 P--------------LCEGDMWQELSLLA-AG--CRFYDLDEMVNIASINGRKV 324 (329)
T ss_pred C--------------CCCCCHHHHHHHHH-HH--cCCCCHHHHHHHHhhhHHHH
Confidence 2 12211111111111 11 23357999999999999984
|
|
| >COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=9e-13 Score=121.75 Aligned_cols=169 Identities=18% Similarity=0.229 Sum_probs=129.4
Q ss_pred CccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCC----------CCCceEEeCCCCEEeccccccccccccCcCCC
Q 014320 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV----------GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS 121 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~----------~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~ 121 (427)
-.|++|.|+.|+|..++..++|-|+||||++||..... .+.+++|-+.|+++.-|-||+|+|+-.+
T Consensus 66 ~~D~VITNa~IiD~~Gi~KADiGikdGrI~~IGKaGNPd~~dgV~iiiG~sTe~iagEg~I~TAGGiDtHiHfI~P---- 141 (568)
T COG0804 66 ALDLVITNALIIDYWGIVKADIGIKDGRIAGIGKAGNPDIMDGVTIIIGPSTEIIAGEGKIVTAGGIDTHIHFICP---- 141 (568)
T ss_pred cccEEEeeeEEEeccceEEeecccccceEEEeecCCCCCccCCceEEeccccceecCCceEEeeccccceeEEecH----
Confidence 46899999999999999999999999999999975432 2357889999999999999999998776
Q ss_pred CChhhHHHHHHHHHcCCceEEecCcCCCC-C-------cHHHHHHHHHHHhccccceeceeccccCCChhhHHHHHHHHH
Q 014320 122 ETIDDFFSGQAAALAGGTTMHIDFVIPIN-G-------SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVK 193 (427)
Q Consensus 122 ~~~e~~~~~~~~~l~~GvTtv~d~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (427)
+ ....++.+||||++--+..+. . ...-.++.+.++....++++++.+--.. .....+.+.+
T Consensus 142 ---q----qi~~Al~sGiTtmiGGGtGpa~Gt~aTT~TpG~w~i~rMl~a~d~~p~N~g~lgKGn~---s~~~~L~Eqi- 210 (568)
T COG0804 142 ---Q----QIEEALASGITTMIGGGTGPADGTNATTCTPGPWHIARMLQAADGLPMNIGFLGKGNA---SNPAPLAEQI- 210 (568)
T ss_pred ---H----HHHHHHhcCcEEEecCccCCCCCcccccccCCHHHHHHHHHhhhcCceeeEEeecCCC---CCchhHHHHH-
Confidence 1 256789999999985321111 0 2233455666666677888888653222 2234466667
Q ss_pred HcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChh
Q 014320 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGD 239 (427)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~ 239 (427)
..|+.++|+.-+|. .++..+..++..|.+++++|.+|..+-.
T Consensus 211 ~aGa~GlKlHEDWG----~TpaaI~~~L~VAD~~DvqVaiHtDTLN 252 (568)
T COG0804 211 EAGAIGLKLHEDWG----ATPAAIDTCLSVADEYDVQVAIHTDTLN 252 (568)
T ss_pred hhccceeEeecccC----CCHHHHHHHHhhhhhhceEEEEeecccc
Confidence 78999999988775 5788999999999999999999975543
|
|
| >KOG2902 consensus Dihydroorotase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.8e-11 Score=102.26 Aligned_cols=242 Identities=16% Similarity=0.111 Sum_probs=151.4
Q ss_pred EEeccccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCC--cHHHHHHHHHHHhccccceeceeccccC
Q 014320 102 FVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING--SLTAGFEAYEKKAKNSCMDYGFHMAITK 179 (427)
Q Consensus 102 ~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (427)
+-+|+.-|+|+|+.+. .... .- .--...+||.-..-|.+-.+. ...+.+. +++...+..-.-.+.+.+.-
T Consensus 5 l~i~~~~DmHvHlR~g--~ml~-aV----vP~~a~ggvs~AyvMPNL~PPiTt~da~i~-YkK~i~kL~skttfLMslYL 76 (344)
T KOG2902|consen 5 LTITQPDDMHVHLRDG--DMLH-AV----VPHSASGGVSRAYVMPNLKPPITTTDAAII-YKKFIMKLPSKTTFLMSLYL 76 (344)
T ss_pred EecCCccceeEEeccC--Ceee-ee----ccccccCceeEEEEcCCCCCCcchHHHHHH-HHHHHHhcCccceeEEEEee
Confidence 3478999999999885 2111 00 112356789988888654333 3333333 33332221111112222222
Q ss_pred CChhhHHHHHHHHHHcCCCeEEEEEecCCC---ccC--CHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCC
Q 014320 180 WDEVVSDEMEVMVKEKGINSFKFFMAYKGS---FMI--NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGIT 254 (427)
Q Consensus 180 ~~~~~~~~~~~l~~~~g~~~ik~~~~~~~~---~~~--~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~ 254 (427)
..+...+.+.+..+..++.++|.|-..... ..+ .-+.+..++++..+.|+++.+|-|-+.....
T Consensus 77 s~~ttPe~I~eAa~~~~irgVK~YPaGaTTNS~~GV~~~f~~fyPvf~aMqe~nm~LnvHGEvpps~D~----------- 145 (344)
T KOG2902|consen 77 SDKTTPEEIREAAESGVIRGVKLYPAGATTNSQDGVTDLFGKFYPVFEAMQEQNMPLNVHGEVPPSIDG----------- 145 (344)
T ss_pred cCCCCHHHHHHHHHhCceeeEEeccCcccccccccccccchhhhHHHHHHHHcCceEEecCCCCCccCC-----------
Confidence 222234456666645567789987653111 111 2356778899999999999999876543311
Q ss_pred CcccccccCCHHHHHHHHHHHHHHHHhc-CCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCccc
Q 014320 255 GPEGHALSRPPLLEGEATTRAIRLAEFV-NTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVT 333 (427)
Q Consensus 255 ~~~~~~~~~p~~~e~~a~~~~~~~~~~~-g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~ 333 (427)
|.. .+|..-+...+++-... ..++.+.|+++.++++.++.++ +..|.+.+++|||+++.+++..
T Consensus 146 ----~Vf----~aE~~Flptll~LhqrfP~LKivlEHcTt~dAv~~ve~a~--~~sVaaTvTahHL~Lt~~dwqg----- 210 (344)
T KOG2902|consen 146 ----HVF----DAEKIFLPTLLQLHQRFPQLKIVLEHCTTMDAVNFVESAK--EGSVAATVTAHHLLLTRNDWQG----- 210 (344)
T ss_pred ----cee----cchhhhHHHHHHHHHhCccceeHHHhcccHHHHHHHHhhc--CCceeeEeehheeEEehhhhcC-----
Confidence 100 01222233334443332 4568899999999988888765 4678888899999999877532
Q ss_pred CceeEEcCCCCCcccHHHHHHHHhcCCc-eEEecCCCCCChhhhh
Q 014320 334 AAKYVMSPPIRASGHNKALQAALATGIL-QLVGTDHCAFNSTQKA 377 (427)
Q Consensus 334 ~~~~~~~pplr~~~~~~~l~~~l~~G~~-~~lgSD~~p~~~~~~~ 377 (427)
.....|.|..+.+.||++|.++.-+|-. ..+|||.+||....|.
T Consensus 211 ~P~nfCkPVaK~e~dr~AlvkAatSg~pkFFfGsDSAPHprs~K~ 255 (344)
T KOG2902|consen 211 QPHNFCKPVAKREIDREALVKAATSGSPKFFFGSDSAPHPRSRKE 255 (344)
T ss_pred CCcccccccccCcccHHHHHHHHhcCCCceeecCCCCCCcccccc
Confidence 1344578889999999999999888875 8899999999988875
|
|
| >PF01979 Amidohydro_1: Amidohydrolase family; InterPro: IPR006680 This group of enzymes represents a large metal dependent hydrolase superfamily [] | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.3e-12 Score=120.05 Aligned_cols=135 Identities=22% Similarity=0.258 Sum_probs=74.2
Q ss_pred EEeccccccccccccCcCCCC-------ChhhHHHHHHHHHcCCceEEecCcCCCCCcH---HHHHHHHHHHhcc-----
Q 014320 102 FVMPGGIDPHTHLAMEFMGSE-------TIDDFFSGQAAALAGGTTMHIDFVIPINGSL---TAGFEAYEKKAKN----- 166 (427)
Q Consensus 102 ~v~PG~ID~H~H~~~~~~g~~-------~~e~~~~~~~~~l~~GvTtv~d~~~~~~~~~---~~~~~~~~~~~~~----- 166 (427)
+|+|||||+|+|+.++ ... ..+.+....+.++++||||++|+........ ............+
T Consensus 1 ~v~PGlID~H~H~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (333)
T PF01979_consen 1 YVMPGLIDAHVHGGQG--GLRGLLDPEDHYESIRTGAKAALKGGVTTVLDTPHTSPNPDIELRNEIMEGLAAAPKIEPAM 78 (333)
T ss_dssp EEEE-EEEEEEEGGGT--THTTSSSHHHHHHHHHHHHHHHHHTTEEEEEEEEESSHCHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred CEEcChhHHhhCcCCc--CccccCCHHHHHHHHHHHHHHHHhcCeEEEEcCcccCCccccccccccccccccchhhhccc
Confidence 6999999999999987 333 3455667788899999999999853322211 1111111111111
Q ss_pred ccc---eeceeccccCCChhh---------HHHHHHHHHHcCCC-----eEEEEEecCCCccCCHHHHHHHHHHHHH---
Q 014320 167 SCM---DYGFHMAITKWDEVV---------SDEMEVMVKEKGIN-----SFKFFMAYKGSFMINDELLIEGFKRCKS--- 226 (427)
Q Consensus 167 ~~~---~~~~~~~~~~~~~~~---------~~~~~~l~~~~g~~-----~ik~~~~~~~~~~~~~~~l~~~~~~a~~--- 226 (427)
..+ ..+.+........+. ..++.+.....+.. .+...........++.+.++..++.+++
T Consensus 79 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 158 (333)
T PF01979_consen 79 TLLGTGSVGGHGEGPNEPPDKNGPHDEAFEGEDFIKFIEEAGSEIKRIDGVIPAISPHNPYTVSDEELREAVELAKEFLA 158 (333)
T ss_dssp EEEEECECSEEEECHHHHHHHHSEHHHHHHHHHHHHHHHHHTTTCEEEECEEEEEEHHTTTTSCHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccCCchhhhHHHHHHHhhhhhhhhcccccccccccccccccchhhhhhhHHhhhhhHHH
Confidence 011 111111110000000 11222222222211 3444555666778899999999999988
Q ss_pred --c-CCcEEEecCCh
Q 014320 227 --L-GALAMVHAENG 238 (427)
Q Consensus 227 --~-g~~v~~H~e~~ 238 (427)
. ++++++|+.+.
T Consensus 159 ~~~~~~~~~~h~~~~ 173 (333)
T PF01979_consen 159 AEKLGIPVHIHVAEG 173 (333)
T ss_dssp HHHHTHEEEEEESSS
T ss_pred HHhhcccceeeeccC
Confidence 3 99999997443
|
The family includes adenine deaminase (3.5.4.2 from EC) that hydrolyses adenine to form hypoxanthine and ammonia. The adenine deaminase reaction is important for adenine utilization as a purine and also as a nitrogen source []. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases (3.5.1.25 from EC). These enzymes catalyse the reaction: |
| >PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ] | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.1e-12 Score=123.63 Aligned_cols=234 Identities=16% Similarity=0.105 Sum_probs=120.1
Q ss_pred HHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccc--cceeceec------cccCCChhhHHHHHH---HHHHcCCCeE
Q 014320 132 AAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNS--CMDYGFHM------AITKWDEVVSDEMEV---MVKEKGINSF 200 (427)
Q Consensus 132 ~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------~~~~~~~~~~~~~~~---l~~~~g~~~i 200 (427)
..+.+.|+||+.|+.. ......+.++.+++..... .+.+..+. ...+........+.+ +.+..|..
T Consensus 137 ~~~~a~GiTt~~d~~~-~~~~~~~~~~~~~~l~~~~~l~~rv~~~~~~~~vk~~~dg~~~~~~a~~~~~~~~~~~g~~-- 213 (404)
T PF07969_consen 137 MAAGAYGITTVLDYGG-GFASDPEDLEALRELAAEGGLPLRVHLYPRIGGVKIFADGSPGGRTALLEEPYYADEPGAP-- 213 (404)
T ss_dssp HHHCHTCEEEETTCEC-CCGEHHHHHHHHHHHHHCTC--SEEEEEEEEEEEEEESSSSTTHHHHHHHHHHHHHHHTSE--
T ss_pred HHhcCCCeEEecCCcc-ccCCCHHHHHHHHHHhhhcCCCeeeeeecccCceeeccccccccchhhhccccccCccccc--
Confidence 4457899999999861 1123445555555554332 22322211 111222212222222 22223321
Q ss_pred EEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHH
Q 014320 201 KFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAE 280 (427)
Q Consensus 201 k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~ 280 (427)
...++....+++.+.++++.|++.|+++.+|+.++..+....+.+++.+
T Consensus 214 ---~~~~g~~~~~~~~l~~~v~~a~~~g~~v~vHa~gd~a~~~~l~a~~~~~---------------------------- 262 (404)
T PF07969_consen 214 ---VHISGLPSFDPEELEELVRAAREAGLQVAVHAIGDRAIDEALDAIEAAR---------------------------- 262 (404)
T ss_dssp ---EEETC--SSSHHHHHHHHHHHHHCT-EEEEEEESHHHHHHHHHHHHHHT----------------------------
T ss_pred ---ccccccccccchhHHHHHHHHHhcCCeeEEEEcCCchHHhHHHHHHhhc----------------------------
Confidence 1334556678888999999999999999999988776655443332221
Q ss_pred hcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCC
Q 014320 281 FVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGI 360 (427)
Q Consensus 281 ~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~ 360 (427)
....+.|+..... +.++++++.|+. +.+.|+++...........++. .+.... ..++.+++.|+
T Consensus 263 ---~~~~i~h~~~~~~-~~~~~~~~l~~~--~~~~p~~~~~~~~~~~~~~~~~-~~~~~~---------~~~~~~~~~Gv 326 (404)
T PF07969_consen 263 ---ARGRIEHAELIDP-DDIERMAELGVT--ASVQPHFLFSWGGEWYEERLGP-ERARRI---------YPIRSLLDAGV 326 (404)
T ss_dssp ---CCHEEEEHCBCCH-HHHHHHHHHTTE--EEECCTHHHHETEETHHHHHHH-HCGGGB---------THHHHHHHCTT
T ss_pred ---ccceeeccccCCH-HHHHHHHHhCCc--cccChhHhhhccchhhhhhhhh-HHHHHH---------hHHHHHHhccC
Confidence 1115788876553 667778887754 4457765543331110000000 011111 34677999999
Q ss_pred ceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHH-H--HHhcCCCCHHHHHHHHchhhhcC
Q 014320 361 LQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWD-T--MVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 361 ~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~-~--~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
.+++|||+ |...... +. ++....++...... . ....+.+|++|+++++|.|||+.
T Consensus 327 ~v~~gsD~-p~~~~~P------~~----~~~~~~~~~~~~~~~~~~~~~~~~ls~~eAl~~~T~~~A~~ 384 (404)
T PF07969_consen 327 RVALGSDA-PVSPPNP------FR----GIWAAVTRQMAGERSGPVLGPEQRLSLEEALRAYTSNPARA 384 (404)
T ss_dssp EEEE--TT-TTSSCCH------HH----HHHHHHHHHHCHHTHHHCCGGTGSSHHHHHHHHTTHHHHHH
T ss_pred ceecCcCC-cccccCc------ch----hhhhhhccccccccccccccccccCCHHHHHHHHhHHHHHH
Confidence 99999996 3321111 00 01111111110000 0 00126899999999999999974
|
Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A .... |
| >cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.1e-08 Score=94.80 Aligned_cols=263 Identities=15% Similarity=0.082 Sum_probs=135.3
Q ss_pred cccccccccccCcCCC---------C---ChhhHHHHHHHHHcCCceEEecCcCCCC-CcHHHHHHHHHHHhccccceec
Q 014320 106 GGIDPHTHLAMEFMGS---------E---TIDDFFSGQAAALAGGTTMHIDFVIPIN-GSLTAGFEAYEKKAKNSCMDYG 172 (427)
Q Consensus 106 G~ID~H~H~~~~~~g~---------~---~~e~~~~~~~~~l~~GvTtv~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 172 (427)
|++.+|=|+...+.+. . ..+........+.++|||+++|.+.... .......+..++.+.+.+...+
T Consensus 1 g~~~~heh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvttiv~~~~~~~~~~~~~~~~~~~~~g~~v~~~~G 80 (293)
T cd00530 1 GVTLTHEHLIIDSSGFVRDPPEVDDFDLADVEAAKEELKRFRAHGGRTIVDATPPGIGRDVEKLAEVARATGVNIVAATG 80 (293)
T ss_pred CcccccCCeeecChhhccCcccccccchhhHHHHHHHHHHHHHcCCCeEEEcCCcccCcCHHHHHHHHHHhCCcEEEecc
Confidence 6778888876543211 1 1122233456678999999999875321 2333333333333334444455
Q ss_pred eeccccC---CChhhHHHHHH----HHH----HcCC--CeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCCh-
Q 014320 173 FHMAITK---WDEVVSDEMEV----MVK----EKGI--NSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG- 238 (427)
Q Consensus 173 ~~~~~~~---~~~~~~~~~~~----l~~----~~g~--~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~- 238 (427)
++..... ..+...+++.+ .+. ..++ ..++.............+.+++.++.|+++|+||++|+.+.
T Consensus 81 ~hp~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~i~~~~IGEigld~~~~~~q~~~f~~~~~lA~~~~~Pv~iH~~~~~ 160 (293)
T cd00530 81 FYKDAFYPEWVRLRSVEELTDMLIREIEEGIEGTGIKAGIIKEAGGSPAITPLEEKVLRAAARAQKETGVPISTHTQAGL 160 (293)
T ss_pred cCCCccChHHHhhCCHHHHHHHHHHHHHhccccCCcCceEEEEeecCCCCCHHHHHHHHHHHHHHHHHCCeEEEcCCCCc
Confidence 5432210 00111122221 121 1122 23433322222222345578899999999999999998542
Q ss_pred hhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccc
Q 014320 239 DAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSG 318 (427)
Q Consensus 239 ~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~ 318 (427)
.......+.+.+.|+. ..++.+.|+......+.++++.+.|..+..+.....
T Consensus 161 ~~~~~~l~~l~~~g~~----------------------------~~~~vi~H~~~~~~~~~~~~~~~~G~~i~~~~~~~~ 212 (293)
T cd00530 161 TMGLEQLRILEEEGVD----------------------------PSKVVIGHLDRNDDPDYLLKIAALGAYLEFDGIGKD 212 (293)
T ss_pred cccHHHHHHHHHcCCC----------------------------hhheEEeCCCCCCCHHHHHHHHhCCCEEEeCCCCcc
Confidence 2222222233322221 123568899632235778888888866554322110
Q ss_pred eeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCc--eEEecCCCCCChhhhhcCCCCCccCCCCCchhhHh
Q 014320 319 LVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGIL--QLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEER 396 (427)
Q Consensus 319 l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~--~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~ 396 (427)
- ....++. ....+.++++++.|.. +.++||. |+....... .+-.+....
T Consensus 213 ~-----------------~~~~~~~--~~~~~~l~~~~~~~~~d~ill~TD~-p~~~~~~~~---------~~~~~~~~~ 263 (293)
T cd00530 213 K-----------------IFGYPSD--ETRADAVKALIDEGYGDRLLLSHDV-FRKSYLEKR---------YGGHGYDYI 263 (293)
T ss_pred c-----------------ccCCCCH--HHHHHHHHHHHHCCCcCCEEEeCCc-Cchhhhhhc---------cCCCChHHH
Confidence 0 0001111 2234668889999875 5999995 553322110 111122222
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 397 MHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 397 l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
+..+. ......+++.+++.++++.||+|+
T Consensus 264 ~~~~~-~~~~~~g~~~e~i~~~~~~N~~~l 292 (293)
T cd00530 264 LTRFI-PRLRERGVTEEQLDTILVENPARF 292 (293)
T ss_pred HHHHH-HHHHHcCCCHHHHHHHHHHCHHHh
Confidence 22222 334567899999999999999986
|
PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active. |
| >cd01310 TatD_DNAse TatD like proteins; E | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-08 Score=93.27 Aligned_cols=241 Identities=17% Similarity=0.110 Sum_probs=126.6
Q ss_pred ccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceecccc-CCChhhH
Q 014320 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAIT-KWDEVVS 185 (427)
Q Consensus 107 ~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 185 (427)
+||+|+|+... .. ..+.....+.+...||++++.+.... ...+.+....+...+....++++.... ...++..
T Consensus 1 ~~D~H~H~~~~--~~--~~~~~~~l~~~~~~gv~~~v~~~~~~--~~~~~~~~la~~~~~i~~~~G~hP~~~~~~~~~~~ 74 (251)
T cd01310 1 LIDTHCHLDFP--QF--DADRDDVLARAREAGVIKIIVVGTDL--KSSKRALELAKKYDNVYAAVGLHPHDADEHVDEDL 74 (251)
T ss_pred CEEeeeCCCch--hh--ccCHHHHHHHHHHcCCCEEEEeCCCH--HHHHHHHHHHHhCCCeEEEEeeCcchhhcCCHHHH
Confidence 68999998754 11 12223335566788999998775321 111222222222122222334432211 1122345
Q ss_pred HHHHHHHHHcCCCeE-EEEEecCCCcc---CCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccc
Q 014320 186 DEMEVMVKEKGINSF-KFFMAYKGSFM---INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHAL 261 (427)
Q Consensus 186 ~~~~~l~~~~g~~~i-k~~~~~~~~~~---~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~ 261 (427)
+++++.++..++.++ ++.++...... ...+.++.+++.|++.+++|.+|+.... .
T Consensus 75 ~~l~~~~~~~~~~~IGeiGld~~~~~~~~~~q~~~~~~~~~~a~e~~~pv~iH~~~~~--~------------------- 133 (251)
T cd01310 75 DLLELLAANPKVVAIGEIGLDYYRDKSPREVQKEVFRAQLELAKELNLPVVIHSRDAH--E------------------- 133 (251)
T ss_pred HHHHHHhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCch--H-------------------
Confidence 666666533455566 34444322211 3457789999999999999999975321 1
Q ss_pred cCCHHHHHHHHHHHHHHHHhcC-CCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEc
Q 014320 262 SRPPLLEGEATTRAIRLAEFVN-TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMS 340 (427)
Q Consensus 262 ~~p~~~e~~a~~~~~~~~~~~g-~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~ 340 (427)
..++++++.+ .+..+.|..... .+.++++.+.|+.+.. ++....
T Consensus 134 ------------~~~~l~~~~~~~~~~i~H~~~~~-~~~~~~~~~~g~~~~~--~~~~~~-------------------- 178 (251)
T cd01310 134 ------------DVLEILKEYGPPKRGVFHCFSGS-AEEAKELLDLGFYISI--SGIVTF-------------------- 178 (251)
T ss_pred ------------HHHHHHHhcCCCCCEEEEccCCC-HHHHHHHHHcCCEEEe--eeeecc--------------------
Confidence 1123334443 334456765432 2456666667755543 321100
Q ss_pred CCCCCcccHHHHHHHHhcC--CceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHH
Q 014320 341 PPIRASGHNKALQAALATG--ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRL 418 (427)
Q Consensus 341 pplr~~~~~~~l~~~l~~G--~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~ 418 (427)
+ ....+.+.++.+ ..+.++||+ |+...... ..| .+....++.++..+....+++.+++.++
T Consensus 179 ---~---~~~~~~~~~~~~~~dril~~TD~-p~~~~~~~---------~~~-~~~~~~~~~~~~~la~~~gl~~e~~~~~ 241 (251)
T cd01310 179 ---K---NANELREVVKEIPLERLLLETDS-PYLAPVPF---------RGK-RNEPAYVKHVAEKIAELKGISVEEVAEV 241 (251)
T ss_pred ---C---CCHHHHHHHHhCChHHEEEcccC-CCCCCCCC---------CCC-CCCChhHHHHHHHHHHHHCcCHHHHHHH
Confidence 0 011234444444 367999997 65432211 011 2222334444434444578999999999
Q ss_pred HchhhhcC
Q 014320 419 TSTEWGRL 426 (427)
Q Consensus 419 ~t~npA~~ 426 (427)
++.||+|+
T Consensus 242 ~~~N~~~l 249 (251)
T cd01310 242 TTENAKRL 249 (251)
T ss_pred HHHHHHHH
Confidence 99999986
|
coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity. |
| >COG1229 FwdA Formylmethanofuran dehydrogenase subunit A [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.5e-09 Score=97.77 Aligned_cols=64 Identities=41% Similarity=0.661 Sum_probs=52.4
Q ss_pred CccEEEECcEEEcCCC---ceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccC
Q 014320 52 SSKILIKGGTVVNAHH---QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAME 117 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~---~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~ 117 (427)
+..++|+|+.|+|+-. -+.-+|.|+||||++-.+-. ....+|||+.|+++|||-+|+|+|+..+
T Consensus 2 ~~e~~IKNg~V~dPlngingE~MDI~vkdGKIVe~sev~--~~~aKVIDA~gklvm~GGvD~HsHvAG~ 68 (575)
T COG1229 2 AMEILIKNGIVYDPLNGINGEKMDICVKDGKIVEESEVS--ESKAKVIDASGKLVMPGGVDSHSHVAGA 68 (575)
T ss_pred CceEEeecCEEecCccCCCCceeeEEeecCeEeeecccc--cccceEEeccCcEEecCccccccccccc
Confidence 4568999999999875 35789999999998753321 1237899999999999999999999874
|
|
| >TIGR00010 hydrolase, TatD family | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.4e-08 Score=90.36 Aligned_cols=241 Identities=17% Similarity=0.151 Sum_probs=120.2
Q ss_pred ccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceeccccCC-ChhhH
Q 014320 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKW-DEVVS 185 (427)
Q Consensus 107 ~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 185 (427)
|||+|+|+... ... ++.....+.+...|+++++++.... .......+..+ ..++.....+++...... .++..
T Consensus 1 ~iD~H~Hl~~~--~~~--~~~~~~~~~~~~~Gv~~~v~~~~~~-~~~~~~~~~~~-~~~~i~~~~GihP~~~~~~~~~~~ 74 (252)
T TIGR00010 1 LIDAHCHLDFL--DFE--EDVEEVIERAKAAGVTAVVAVGTDL-EDFLRALELAE-KYPNVYAAVGVHPLDVDDDTKEDI 74 (252)
T ss_pred CEEeccCCCCh--hhc--cCHHHHHHHHHHcCCCEEEEecCCH-HHHHHHHHHHH-HCCCEEEEEEeCcchhhcCCHHHH
Confidence 68999998643 111 1233336667788999999764321 11111122122 222333333444211111 13344
Q ss_pred HHHHHHHHHcCCCeEEEE-EecCCCccC---CHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccc
Q 014320 186 DEMEVMVKEKGINSFKFF-MAYKGSFMI---NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHAL 261 (427)
Q Consensus 186 ~~~~~l~~~~g~~~ik~~-~~~~~~~~~---~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~ 261 (427)
+++++.++..++.+++.. +++...... ..+.++..++.|+++|++|.+|+.... ...
T Consensus 75 ~~l~~~l~~~~~~~iGEiGld~~~~~~~~~~q~~~~~~~~~~a~~~~~pv~iH~~~~~--~~~----------------- 135 (252)
T TIGR00010 75 KELERLAAHPKVVAIGETGLDYYKADEYKRRQEEVFRAQLQLAEELNLPVIIHARDAE--EDV----------------- 135 (252)
T ss_pred HHHHHHccCCCEEEEEecccCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEecCcc--HHH-----------------
Confidence 566665533445555432 433211111 237888889999999999999985321 011
Q ss_pred cCCHHHHHHHHHHHHHHHHhcC-CCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEc
Q 014320 262 SRPPLLEGEATTRAIRLAEFVN-TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMS 340 (427)
Q Consensus 262 ~~p~~~e~~a~~~~~~~~~~~g-~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~ 340 (427)
+++.++.+ ....+.|..... .+.++++.+.|+.+.. +.... +
T Consensus 136 --------------~~~l~~~~~~~~~i~H~~~~~-~~~~~~~~~~g~~~~~--~~~~~-~------------------- 178 (252)
T TIGR00010 136 --------------LDILREEKPKVGGVLHCFTGD-AELAKKLLDLGFYISI--SGIVT-F------------------- 178 (252)
T ss_pred --------------HHHHHhcCCCCCEEEEccCCC-HHHHHHHHHCCCeEee--ceeEe-c-------------------
Confidence 11121221 123356765433 3667777777765543 32100 0
Q ss_pred CCCCCcccHHHHHHHHhcC--CceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHH
Q 014320 341 PPIRASGHNKALQAALATG--ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRL 418 (427)
Q Consensus 341 pplr~~~~~~~l~~~l~~G--~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~ 418 (427)
+ +.+.+.+.++.. ..+.++||. |+....+ + .|...-...++..........+++.+++.++
T Consensus 179 ---~---~~~~~~~~i~~~~~dril~~TD~-p~~~~~~------~----~~~~~~p~~i~~~~~~~a~~~g~~~~~~~~~ 241 (252)
T TIGR00010 179 ---K---NAKSLREVVRKIPLERLLVETDS-PYLAPVP------Y----RGKRNEPAFVRYTVEAIAEIKGMDVEELAQI 241 (252)
T ss_pred ---C---CcHHHHHHHHhCCHHHeEecccC-CCCCCCC------C----CCCCCCChhHHHHHHHHHHHhCcCHHHHHHH
Confidence 0 012234445443 478999996 5421110 0 0111111123322222222358999999999
Q ss_pred HchhhhcC
Q 014320 419 TSTEWGRL 426 (427)
Q Consensus 419 ~t~npA~~ 426 (427)
++.||+|+
T Consensus 242 ~~~N~~~~ 249 (252)
T TIGR00010 242 TTKNAKRL 249 (252)
T ss_pred HHHHHHHH
Confidence 99999985
|
Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity. |
| >PRK10812 putative DNAse; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.3e-07 Score=84.69 Aligned_cols=245 Identities=17% Similarity=0.144 Sum_probs=130.8
Q ss_pred ccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceeccccCCChhhHH
Q 014320 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSD 186 (427)
Q Consensus 107 ~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (427)
+||+|+|+...... ...++.......+...||..++..+.... .....+ .+.+..+..+..+|+|..... .+..++
T Consensus 3 ~iDtH~Hl~~~~~~-~~~~d~~~vl~~a~~~gv~~~~~~~~~~~-~~~~~~-~l~~~~~~v~~~~GiHP~~~~-~~~~~~ 78 (265)
T PRK10812 3 LVDSHCHLDGLDYQ-SLHKDVDDVLAKAAARDVKFCLAVATTLP-GYRHMR-DLVGERDNVVFSCGVHPLNQD-EPYDVE 78 (265)
T ss_pred eEEeccCCCCccch-hhhcCHHHHHHHHHHcCCCEEEEeCCCHH-HHHHHH-HHHhhCCCeEEEEEeCCCCCC-ChhHHH
Confidence 79999999742000 01223334466777889988876432111 111111 122222334445666653322 233456
Q ss_pred HHHHHHHHcCCCeE-EEEEecCCC---ccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCccccccc
Q 014320 187 EMEVMVKEKGINSF-KFFMAYKGS---FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALS 262 (427)
Q Consensus 187 ~~~~l~~~~g~~~i-k~~~~~~~~---~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~ 262 (427)
.+.+++....+..| .+.+++... .....+.+++.++.|+++++|+.+|+.+.. ....+.+.+.+.
T Consensus 79 ~l~~~~~~~~vvaIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~e~~~Pv~iH~r~a~--~~~l~iL~~~~~--------- 147 (265)
T PRK10812 79 ELRRLAAEEGVVAMGETGLDYYYTPETKVRQQESFRHHIQIGRELNKPVIVHTRDAR--ADTLAILREEKV--------- 147 (265)
T ss_pred HHHHHhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCch--HHHHHHHHhhcC---------
Confidence 66666633345556 455665311 112345788999999999999999974421 122222221111
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCC
Q 014320 263 RPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPP 342 (427)
Q Consensus 263 ~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pp 342 (427)
...+. +.|+.+.+ .+.++.+.+.|..+...... .
T Consensus 148 -------------------~~~~~-v~H~fsG~-~~~a~~~~~~G~~is~~g~~---t---------------------- 181 (265)
T PRK10812 148 -------------------TDCGG-VLHCFTED-RETAGKLLDLGFYISFSGIV---T---------------------- 181 (265)
T ss_pred -------------------CCCCE-EEEeecCC-HHHHHHHHHCCCEEEECeee---e----------------------
Confidence 01122 57886544 57788888888655542111 0
Q ss_pred CCCcccHHHHHHHHhcC--CceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHc
Q 014320 343 IRASGHNKALQAALATG--ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTS 420 (427)
Q Consensus 343 lr~~~~~~~l~~~l~~G--~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t 420 (427)
. ...+.+++.++.+ ..+.+.||. |+...... .|-.+.-..++.......+-.+++.+++.+.++
T Consensus 182 ~---~~~~~~~~~~~~ipldrlLlETD~-P~~~p~~~----------~g~~n~P~~i~~v~~~ia~l~g~~~eei~~~~~ 247 (265)
T PRK10812 182 F---RNAEQLRDAARYVPLDRLLVETDS-PYLAPVPH----------RGKENQPAMVRDVAEYMAVLKGVSVEELAQVTT 247 (265)
T ss_pred c---CccHHHHHHHHhCChhhEEEecCC-CCCCCcCC----------CCCCCCcHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 0 1123456666655 468899995 76432111 121122223444333333446799999999999
Q ss_pred hhhhcC
Q 014320 421 TEWGRL 426 (427)
Q Consensus 421 ~npA~~ 426 (427)
.|+.++
T Consensus 248 ~N~~~l 253 (265)
T PRK10812 248 DNFARL 253 (265)
T ss_pred HHHHHH
Confidence 999874
|
|
| >PRK09875 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.1e-06 Score=81.91 Aligned_cols=258 Identities=15% Similarity=0.111 Sum_probs=135.6
Q ss_pred cccccccccccCcCCCC--------ChhhHHHHHHHHHcCCceEEecCcCCCCCcHHHHHHHHH-HHhccccceeceecc
Q 014320 106 GGIDPHTHLAMEFMGSE--------TIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYE-KKAKNSCMDYGFHMA 176 (427)
Q Consensus 106 G~ID~H~H~~~~~~g~~--------~~e~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 176 (427)
|+..+|=|+...+.+.. ..+......+...+.|+.|++|+...........+++.. +.+-+....-+++..
T Consensus 7 G~tl~HEHl~~~~~~~~~~~~~~l~~~~~~~~el~~~~~~Gg~tiVd~T~~g~GRd~~~l~~is~~tgv~Iv~~TG~y~~ 86 (292)
T PRK09875 7 GYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYYQD 86 (292)
T ss_pred CcceecCCeEecChhhcCCcccccccHHHHHHHHHHHHHhCCCeEEecCCCccCcCHHHHHHHHHHhCCcEEEcCcCCCC
Confidence 88889999865422211 122233344556778999999986443332223333332 222222223333321
Q ss_pred c------cCCC-hhhHHHHHHHHHHcCC-------CeE-EEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhH
Q 014320 177 I------TKWD-EVVSDEMEVMVKEKGI-------NSF-KFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAV 241 (427)
Q Consensus 177 ~------~~~~-~~~~~~~~~l~~~~g~-------~~i-k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~ 241 (427)
. .... ++..+.+.+.+ ..|. ..| |+..++........+.+++..+.+++.|.++.+|.......
T Consensus 87 ~~~p~~~~~~~~e~la~~~i~ei-~~Gi~gt~ikaGvIGeiG~~~~~it~~E~kvl~Aaa~a~~~TG~pi~~Ht~~~~~g 165 (292)
T PRK09875 87 AFFPEHVATRSVQELAQEMVDEI-EQGIDGTELKAGIIAEIGSSEGKITPLEEKVFIAAALAHNQTGRPISTHTSFSTMG 165 (292)
T ss_pred ccCCHHHhcCCHHHHHHHHHHHH-HHhhccCCCcccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCcEEEcCCCccch
Confidence 1 0111 11112222222 1222 335 44333321122234567788888899999999996433222
Q ss_pred HHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceee
Q 014320 242 FEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVL 321 (427)
Q Consensus 242 ~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~ 321 (427)
.+.++.+.+.|+. -.++.+.|+......+.++++.+.|+.+-.++.-
T Consensus 166 ~e~l~il~e~Gvd----------------------------~~rvvi~H~d~~~d~~~~~~l~~~G~~l~fD~~g----- 212 (292)
T PRK09875 166 LEQLALLQAHGVD----------------------------LSRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIG----- 212 (292)
T ss_pred HHHHHHHHHcCcC----------------------------cceEEEeCCCCCCCHHHHHHHHHcCCEEEeccCC-----
Confidence 2222333333321 1268899997655567788888899766654220
Q ss_pred CcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcC--CceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHH
Q 014320 322 DDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATG--ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHL 399 (427)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G--~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~ 399 (427)
. ..+ .|. ....+.+..+++.| ..+.+++|-..... +.. .|-.|....+..
T Consensus 213 -~-----------~~~---~pd--~~r~~~i~~L~~~Gy~drilLS~D~~~~~~----------~~~-~gg~G~~~i~~~ 264 (292)
T PRK09875 213 -K-----------NSY---YPD--EKRIAMLHALRDRGLLNRVMLSMDITRRSH----------LKA-NGGYGYDYLLTT 264 (292)
T ss_pred -C-----------ccc---CCH--HHHHHHHHHHHhcCCCCeEEEeCCCCCccc----------ccc-cCCCChhHHHHH
Confidence 0 000 121 12245667777887 46888999643221 111 232455555554
Q ss_pred HHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 400 VWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 400 ~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
+...+. +.+++-+++=+++..||+|+
T Consensus 265 ~ip~L~-~~Gvse~~I~~m~~~NP~r~ 290 (292)
T PRK09875 265 FIPQLR-QSGFSQADVDVMLRENPSQF 290 (292)
T ss_pred HHHHHH-HcCCCHHHHHHHHHHCHHHH
Confidence 443333 45799999999999999985
|
|
| >PF12890 DHOase: Dihydro-orotase-like; InterPro: IPR024403 This entry represents a small family of dihydro-orotase-like proteins from bacteria | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-08 Score=80.66 Aligned_cols=136 Identities=22% Similarity=0.281 Sum_probs=88.2
Q ss_pred CCEEeccccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceeccccC
Q 014320 100 GKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITK 179 (427)
Q Consensus 100 g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (427)
|++++|||||.|+|+..+ |...++.... |+..|++..+.+ .++..+
T Consensus 1 ~kli~~g~vd~hVhlrep--g~~~keti~t-----------T~~ampnt~paP------------------a~itv~--- 46 (142)
T PF12890_consen 1 GKLILPGLVDVHVHLREP--GFEAKETIET-----------TWCAMPNTFPAP------------------AGITVE--- 46 (142)
T ss_pred Cceeehhhhhhhhhhhcc--cchhhhhhhc-----------eeeecCccCCCC------------------cceeee---
Confidence 689999999999999998 7666655432 666665443322 001000
Q ss_pred CChhhHHHHHHHHHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHH----HHHHHcCCCC
Q 014320 180 WDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQ----KRMIELGITG 255 (427)
Q Consensus 180 ~~~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~----~~l~~~G~~~ 255 (427)
..|-..+ .++..+........+.+.++. .+.+..+..|||+++.+.... +.-..+|+
T Consensus 47 --------------~~~~e~~--afsddg~giq~~~lm~eamk~-a~l~~~i~ahceDd~l~~~g~v~~ge~~q~~g~-- 107 (142)
T PF12890_consen 47 --------------DDGEEAF--AFSDDGYGIQIQLLMYEAMKK-AELDQEIVAHCEDDELTNGGVVHDGELPQFLGV-- 107 (142)
T ss_pred --------------ecCcceE--EEecCCceeeeHHHHHHHHHH-HHcccHHHHhhcccccccccccccchhhHHhCC--
Confidence 0111111 223333444567778888888 789999999999886543322 23334442
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCH
Q 014320 256 PEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM 294 (427)
Q Consensus 256 ~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~ 294 (427)
-.+..+|...+.+.+-+++..|+..|+||+++.
T Consensus 108 ------~L~G~cEs~~~~rd~lLak~~g~~yhVchvstk 140 (142)
T PF12890_consen 108 ------YLKGNCESVQCARDVLLAKATGCHYHVCHVSTK 140 (142)
T ss_pred ------cCCCcchHHHHHHHHHhhhccCCcEEEEEEecc
Confidence 123356888999999999999999999999764
|
|
| >cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.7e-07 Score=85.39 Aligned_cols=138 Identities=14% Similarity=0.135 Sum_probs=81.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEec-CChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEc
Q 014320 212 INDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH 290 (427)
Q Consensus 212 ~~~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H 290 (427)
.+.+.+..+++.|+++|+++++|+ |+. ......+.++.. |. ..+.|
T Consensus 170 ~~~~~~~~~~~~A~~~g~~v~~H~~E~~-~~~~~~~a~~~~-------------------------------g~-~~i~H 216 (325)
T cd01320 170 FPPEKFVRAFQRAREAGLRLTAHAGEAG-GPESVRDALDLL-------------------------------GA-ERIGH 216 (325)
T ss_pred CCHHHHHHHHHHHHHCCCceEEeCCCCC-CHHHHHHHHHHc-------------------------------CC-cccch
Confidence 478999999999999999999997 442 111111111112 21 13667
Q ss_pred CCCHH-HHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCC
Q 014320 291 VMSMD-AMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHC 369 (427)
Q Consensus 291 ~~~~~-~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~ 369 (427)
+.... .-+.++.+++.|+.+.. ||......... .....+| ++++++.|+.+++|||..
T Consensus 217 ~~~l~~~~~~~~~l~~~gi~v~~--~P~sn~~l~~~----------~~~~~~p---------~~~l~~~Gv~v~lgTD~~ 275 (325)
T cd01320 217 GIRAIEDPELVKRLAERNIPLEV--CPTSNVQTGAV----------KSLAEHP---------LRELLDAGVKVTINTDDP 275 (325)
T ss_pred hhccCccHHHHHHHHHcCCeEEE--CCCcccccccc----------CCcccCh---------HHHHHHCCCEEEECCCCC
Confidence 66542 12578889999976665 77532211100 0001244 566999999999999974
Q ss_pred CCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhc
Q 014320 370 AFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGR 425 (427)
Q Consensus 370 p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~ 425 (427)
++.. .. +...+...+...++++.++.+ ++.|+++
T Consensus 276 ~~~~-~~--------------------~~~e~~~~~~~~~l~~~el~~-~~~na~~ 309 (325)
T cd01320 276 TVFG-TY--------------------LTDEYELLAEAFGLTEEELKK-LARNAVE 309 (325)
T ss_pred cccC-CC--------------------HHHHHHHHHHHcCCCHHHHHH-HHHHHHH
Confidence 3221 11 111121233445799999555 7788875
|
ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases. |
| >TIGR01430 aden_deam adenosine deaminase | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.7e-07 Score=84.93 Aligned_cols=139 Identities=12% Similarity=0.104 Sum_probs=83.3
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEec-CChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEE
Q 014320 211 MINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV 289 (427)
Q Consensus 211 ~~~~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~ 289 (427)
..+.+.+..+++.|+++|+++++|+ |... .......+++ .|+. .+.
T Consensus 168 ~~~~~~~~~~~~~A~~~g~~i~~Ha~E~~~-~~~~~~~~~~-------------------------------~g~~-ri~ 214 (324)
T TIGR01430 168 GGPPPDFVRAFAIARELGLHLTVHAGELGG-PESVREALDD-------------------------------LGAT-RIG 214 (324)
T ss_pred CCCHHHHHHHHHHHHHCCCCeEEecCCCCC-hHHHHHHHHH-------------------------------cCch-hcc
Confidence 4568899999999999999999998 5421 1111111111 2222 366
Q ss_pred cCCCHH-HHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCC
Q 014320 290 HVMSMD-AMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDH 368 (427)
Q Consensus 290 H~~~~~-~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~ 368 (427)
|..... .-+.++.++++|+.+.+ ||......... .. ...+| +.++++.|+.++||||.
T Consensus 215 Hg~~l~~~~~~i~~l~~~gi~v~~--cP~Sn~~l~~~---------~~-~~~~p---------i~~l~~~Gv~v~igTD~ 273 (324)
T TIGR01430 215 HGVRALEDPELLKRLAQENITLEV--CPTSNVALGVV---------KS-LAEHP---------LRRFLEAGVKVTLNSDD 273 (324)
T ss_pred hhhhhccCHHHHHHHHHcCceEEE--CCccccccccc---------CC-cccCh---------HHHHHHCCCEEEECCCC
Confidence 766541 13678889999976665 77633221100 00 01234 56699999999999997
Q ss_pred CCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhc
Q 014320 369 CAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGR 425 (427)
Q Consensus 369 ~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~ 425 (427)
...... . +.--+...++..++++.+ ++.+|.|+++
T Consensus 274 ~~~~~~-~--------------------l~~e~~~a~~~~~l~~~e-l~~~~~na~~ 308 (324)
T TIGR01430 274 PAYFGS-Y--------------------LTEEYEIAAKHAGLTEEE-LKQLARNALE 308 (324)
T ss_pred CcccCC-C--------------------HHHHHHHHHHHcCCCHHH-HHHHHHHHHH
Confidence 432211 1 111122234456899999 7788999875
|
This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase. |
| >COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.9e-06 Score=75.27 Aligned_cols=242 Identities=18% Similarity=0.118 Sum_probs=134.0
Q ss_pred cccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceecccc-CCChhh
Q 014320 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAIT-KWDEVV 184 (427)
Q Consensus 106 G~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 184 (427)
-|||+|+|+... ...++...-...+...||+-+...+.... .....-.+.+..++.+..+|+|.... ...++.
T Consensus 2 ~liDtH~HL~~~----~~~~d~~~vi~~a~~~gv~~~~~~g~~~~--~~~~~~~la~~y~~v~~~~G~HP~~~~~~~~~~ 75 (256)
T COG0084 2 MLIDTHCHLDFE----EFDEDRDEVIARAREAGVKKMVVVGTDLE--DFKRALELAEKYPNVYAAVGVHPLDADEHSEED 75 (256)
T ss_pred ccEEeeeCCCch----hhcCCHHHHHHHHHHcCCcEEEEeecCHH--HHHHHHHHHHhCCCeEEEEeeCCCccccccHHH
Confidence 379999999853 12233333456678889998886543211 11222222233345566667665441 123566
Q ss_pred HHHHHHHHHH-cCCCeEEE-EEecCCCccC----CHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCccc
Q 014320 185 SDEMEVMVKE-KGINSFKF-FMAYKGSFMI----NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEG 258 (427)
Q Consensus 185 ~~~~~~l~~~-~g~~~ik~-~~~~~~~~~~----~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~ 258 (427)
++.+.+++.. ..+..|.. .+++.-.... -.+.+++.++.|+++++|+.+|+-+.. +
T Consensus 76 ~~~l~~~~~~~~~vvaIGEiGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPviIH~R~A~--~---------------- 137 (256)
T COG0084 76 LEELEQLAEHHPKVVAIGEIGLDYYWDKEPDKERQEEVFEAQLELAKELNLPVIIHTRDAH--E---------------- 137 (256)
T ss_pred HHHHHHHHhcCCCeEEEEecccCccccccccHHHHHHHHHHHHHHHHHcCCCEEEEccccH--H----------------
Confidence 7778887742 45555543 3444322211 346788999999999999999985421 1
Q ss_pred ccccCCHHHHHHHHHHHHHHHHhcC-CCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCcee
Q 014320 259 HALSRPPLLEGEATTRAIRLAEFVN-TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKY 337 (427)
Q Consensus 259 ~~~~~p~~~e~~a~~~~~~~~~~~g-~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~ 337 (427)
..++..++.+ ..--+.|+.+.+ .+..+++-+.|..+....+. .+
T Consensus 138 ---------------d~~~iL~~~~~~~~gi~HcFsGs-~e~a~~~~d~G~yisisG~i---tf---------------- 182 (256)
T COG0084 138 ---------------DTLEILKEEGAPVGGVLHCFSGS-AEEARKLLDLGFYISISGIV---TF---------------- 182 (256)
T ss_pred ---------------HHHHHHHhcCCCCCEEEEccCCC-HHHHHHHHHcCeEEEECcee---ec----------------
Confidence 1122222222 123488987765 58888888888555431111 00
Q ss_pred EEcCCCCCcccHHHHHHHHhc--CCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHH
Q 014320 338 VMSPPIRASGHNKALQAALAT--GILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDY 415 (427)
Q Consensus 338 ~~~pplr~~~~~~~l~~~l~~--G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~ 415 (427)
+. .+.+++.++. =....+=||. |+..... ..|-.+.....+.......+-.+++++++
T Consensus 183 ------k~---a~~~~ev~~~iPldrLL~ETDs-Pyl~P~p----------~rGkrNeP~~v~~v~~~iAelk~~~~eev 242 (256)
T COG0084 183 ------KN---AEKLREVARELPLDRLLLETDA-PYLAPVP----------YRGKRNEPAYVRHVAEKLAELKGISAEEV 242 (256)
T ss_pred ------CC---cHHHHHHHHhCCHhHeEeccCC-CCCCCcC----------CCCCCCCchHHHHHHHHHHHHhCCCHHHH
Confidence 00 0112222221 1236777995 7764321 12222233344444444445568999999
Q ss_pred HHHHchhhhcC
Q 014320 416 VRLTSTEWGRL 426 (427)
Q Consensus 416 v~~~t~npA~~ 426 (427)
.+.+|.|.-++
T Consensus 243 a~~t~~N~~~l 253 (256)
T COG0084 243 AEITTENAKRL 253 (256)
T ss_pred HHHHHHHHHHH
Confidence 99999997654
|
|
| >PRK11449 putative deoxyribonuclease YjjV; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.6e-05 Score=73.23 Aligned_cols=244 Identities=16% Similarity=0.112 Sum_probs=127.6
Q ss_pred eccccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceecccc-CCCh
Q 014320 104 MPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAIT-KWDE 182 (427)
Q Consensus 104 ~PG~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 182 (427)
.+.+||+|+|+... . ..++.......+...||+.++.++.... .....+ .+.+..+.....+|+|.... ...+
T Consensus 2 ~~~~iD~HcHl~~~--~--~~~~~~~~l~~a~~~gv~~~~~~~~~~~-~~~~~~-~l~~~~~~v~~~~GiHP~~~~~~~~ 75 (258)
T PRK11449 2 ICRFIDTHCHFDFP--P--FSGDEEASLQRAAQAGVGKIIVPATEAE-NFARVL-ALAERYQPLYAALGLHPGMLEKHSD 75 (258)
T ss_pred CceEEEeccCCCCh--h--hccCHHHHHHHHHHCCCCEEEEeeCCHH-HHHHHH-HHHHhCCCEEEEEeeCcCccccCCH
Confidence 35589999998653 1 1122333355667889999886543111 122222 22222233444566665332 2234
Q ss_pred hhHHHHHHHHHHc--CCCeEE-EEEecCCCc---cCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCc
Q 014320 183 VVSDEMEVMVKEK--GINSFK-FFMAYKGSF---MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGP 256 (427)
Q Consensus 183 ~~~~~~~~l~~~~--g~~~ik-~~~~~~~~~---~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~ 256 (427)
+..+.+.+++... .+..|. +.+++.... ....+.+.+.++.|+++++||.+|+.+.. ....+
T Consensus 76 ~~~~~l~~~l~~~~~~~~aIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~~~~~Pv~iH~r~a~--~~~~~---------- 143 (258)
T PRK11449 76 VSLDQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTH--DKLAM---------- 143 (258)
T ss_pred HHHHHHHHHHHhCCCCEEEEEecccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEecCcc--HHHHH----------
Confidence 4556666655322 233442 334432111 11346788999999999999999985421 11111
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHhcCCC-EEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCc
Q 014320 257 EGHALSRPPLLEGEATTRAIRLAEFVNTP-LYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAA 335 (427)
Q Consensus 257 ~~~~~~~p~~~e~~a~~~~~~~~~~~g~~-~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~ 335 (427)
+.+..+.+ -.+.|..+.. .+..+.+.+.|..+.. .+. +.+
T Consensus 144 ---------------------il~~~~~~~~~i~H~fsG~-~~~a~~~l~~G~~iS~--~g~-it~-------------- 184 (258)
T PRK11449 144 ---------------------HLKRHDLPRTGVVHGFSGS-LQQAERFVQLGYKIGV--GGT-ITY-------------- 184 (258)
T ss_pred ---------------------HHHhcCCCCCeEEEcCCCC-HHHHHHHHHCCCEEEe--Ccc-ccc--------------
Confidence 11122211 1377886655 5778888888854432 110 000
Q ss_pred eeEEcCCCCCcccHHHHHHHHhc--CCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHH
Q 014320 336 KYVMSPPIRASGHNKALQAALAT--GILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVT 413 (427)
Q Consensus 336 ~~~~~pplr~~~~~~~l~~~l~~--G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~ 413 (427)
+ + .+.+++.++. -..+.+.||. |+-+... ..|-.+.-..++..+....+-.+++.+
T Consensus 185 -----~--~----~~~~~~~~~~ipldriL~ETD~-P~l~p~~----------~~~~~n~p~~~~~~~~~ia~l~~~~~~ 242 (258)
T PRK11449 185 -----P--R----ASKTRDVIAKLPLASLLLETDA-PDMPLNG----------FQGQPNRPEQAARVFDVLCELRPEPAD 242 (258)
T ss_pred -----c--C----cHHHHHHHHhCChhhEEEecCC-CCCCCCC----------CCCCCCCChHHHHHHHHHHHHHCcCHH
Confidence 0 0 1123333321 1247899995 7642111 112223334555555444455679999
Q ss_pred HHHHHHchhhhcC
Q 014320 414 DYVRLTSTEWGRL 426 (427)
Q Consensus 414 ~~v~~~t~npA~~ 426 (427)
++.+.++.|..++
T Consensus 243 el~~~~~~N~~~l 255 (258)
T PRK11449 243 EIAEVLLNNTYTL 255 (258)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
|
|
| >PRK10425 DNase TatD; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.3e-05 Score=73.73 Aligned_cols=248 Identities=11% Similarity=0.062 Sum_probs=127.8
Q ss_pred ccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceecccc-CCChhhH
Q 014320 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAIT-KWDEVVS 185 (427)
Q Consensus 107 ~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 185 (427)
|||+|+|+... . . .++...-...+...||..++..+.... ...+ .....+..+.....+|+|.... ...++.+
T Consensus 1 ~iDtH~HL~~~--~-~-~~d~~~vl~~a~~~gv~~~i~~~~~~~-~~~~-~~~l~~~~~~v~~~~GiHP~~~~~~~~~~~ 74 (258)
T PRK10425 1 MFDIGVNLTSS--Q-F-AKDRDDVVARAFAAGVNGMLITGTNLR-ESQQ-AQKLARQYPSCWSTAGVHPHDSSQWQAATE 74 (258)
T ss_pred CEEeeeCcCCh--h-h-hccHHHHHHHHHHCCCCEEEEeCCCHH-HHHH-HHHHHHhCCCEEEEEEeCcCccccCCHHHH
Confidence 68999998643 1 1 133434466677889988876543211 1122 2222222233444566665332 2234455
Q ss_pred HHHHHHHHHcCCCeEE-EEEecCCCc---cCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccc
Q 014320 186 DEMEVMVKEKGINSFK-FFMAYKGSF---MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHAL 261 (427)
Q Consensus 186 ~~~~~l~~~~g~~~ik-~~~~~~~~~---~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~ 261 (427)
+.+.++.+...+..|. +.+++.... ..-.+.+++.++.|+++++|+.+|+-+.. +...+.+.+.
T Consensus 75 ~~l~~~~~~~~~vaIGEiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~r~a~--~~~l~iL~~~---------- 142 (258)
T PRK10425 75 EAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLAIAAELNMPVFMHCRDAH--ERFMALLEPW---------- 142 (258)
T ss_pred HHHHHhccCCCEEEEeeeeeccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCch--HHHHHHHHHh----------
Confidence 6666655323333443 445543111 11135688899999999999999975321 1111111110
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcC
Q 014320 262 SRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSP 341 (427)
Q Consensus 262 ~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~p 341 (427)
. ...+-.+.|+.+.. .+.++++.+.|..+...... .+ .
T Consensus 143 -----------------~--~~~~~~i~H~fsG~-~~~~~~~l~~G~~~si~g~i--~~--------------------~ 180 (258)
T PRK10425 143 -----------------L--DKLPGAVLHCFTGT-REEMQACLARGLYIGITGWV--CD--------------------E 180 (258)
T ss_pred -----------------c--cCCCCeEEEecCCC-HHHHHHHHHCCCEEEECcee--ec--------------------c
Confidence 0 01111367987665 47788888888655541111 00 0
Q ss_pred CCCCcccHHHHHHHHhc--CCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHH
Q 014320 342 PIRASGHNKALQAALAT--GILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLT 419 (427)
Q Consensus 342 plr~~~~~~~l~~~l~~--G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~ 419 (427)
.....++++++. =..+.+-||. |+..... +...+.|-.+....++.....+.+-.+++.+++.+.+
T Consensus 181 -----~~~~~~~~~~~~ipldrlLlETDa-P~l~P~~------~~~~~~~~~n~P~~i~~v~~~iA~l~~~~~~~v~~~~ 248 (258)
T PRK10425 181 -----RRGLELRELLPLIPAERLLLETDA-PYLLPRD------LTPKPASRRNEPAFLPHILQRIAHWRGEDAAWLAATT 248 (258)
T ss_pred -----cccHHHHHHHHhCChHHEEEeccC-CCCCCCC------cCCCCCCCCCCcHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 001123333321 1247788994 7643211 1111123333344555555455556779999999999
Q ss_pred chhhhcC
Q 014320 420 STEWGRL 426 (427)
Q Consensus 420 t~npA~~ 426 (427)
+.|.-++
T Consensus 249 ~~N~~~l 255 (258)
T PRK10425 249 DANARTL 255 (258)
T ss_pred HHHHHHH
Confidence 9997653
|
|
| >PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.5e-06 Score=77.08 Aligned_cols=242 Identities=16% Similarity=0.110 Sum_probs=125.2
Q ss_pred cccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhc-cccceeceeccccCC-ChhhH
Q 014320 108 IDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK-NSCMDYGFHMAITKW-DEVVS 185 (427)
Q Consensus 108 ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~ 185 (427)
||+|+|+... . ..++.......+...|++.++...... .............+ .....+|+|...... .++..
T Consensus 1 iD~H~Hl~~~--~--~~~~~~~~~~~~~~~g~~~~i~~~~~~--~~~~~~~~~~~~~~~~v~~~~GiHP~~~~~~~~~~~ 74 (255)
T PF01026_consen 1 IDAHCHLDSP--R--FEEDRPEVLERAREAGVSAIIIVSTDP--EDWERVLELASQYPDRVYPALGIHPWEAHEVNEEDL 74 (255)
T ss_dssp EEEEE-TTSG--G--GTTTHHHHHHHHHHTTEEEEEEEESSH--HHHHHHHHHHHHTTTEEEEEE---GGGGGGHSHHHH
T ss_pred CcCccCCCCh--h--hCcCHHHHHHHHHHcCCCEEEEcCCCH--HHhHHHHHHHhcCCCeEEEEecCCcchhhhhhHHHH
Confidence 7999998763 1 122344446778889999997654322 11122222222222 255566776543322 34455
Q ss_pred HHHHHH--HHHcCCCeE-EEEEecCCCc----cCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCccc
Q 014320 186 DEMEVM--VKEKGINSF-KFFMAYKGSF----MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEG 258 (427)
Q Consensus 186 ~~~~~l--~~~~g~~~i-k~~~~~~~~~----~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~ 258 (427)
+.+.++ .....+.+| .+.+++.... ....+.+++.++.|+++++|+.+|+.+. ...
T Consensus 75 ~~l~~l~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vF~~ql~lA~~~~~pv~iH~r~a--~~~--------------- 137 (255)
T PF01026_consen 75 EELEELINLNRPKVVAIGEIGLDYYWRNEEDKEVQEEVFERQLELAKELNLPVSIHCRKA--HEE--------------- 137 (255)
T ss_dssp HHHHHHHHHTSTTEEEEEEEEEETTTTSSSGHHHHHHHHHHHHHHHHHHTCEEEEEEESH--HHH---------------
T ss_pred HHHHHHHHhccccceeeeeeccCcccccCCcHHHHHHHHHHHHHHHHHhCCcEEEecCCc--HHH---------------
Confidence 667776 323445555 3456652111 1124678899999999999999998652 112
Q ss_pred ccccCCHHHHHHHHHHHHHHHHhcCCC--EEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCce
Q 014320 259 HALSRPPLLEGEATTRAIRLAEFVNTP--LYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAK 336 (427)
Q Consensus 259 ~~~~~p~~~e~~a~~~~~~~~~~~g~~--~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~ 336 (427)
.++..++.+.+ ..+.|..+.. .+.++++.+.|..+....... +
T Consensus 138 ----------------~l~il~~~~~~~~~~i~H~f~g~-~~~~~~~~~~g~~~S~~~~~~--~---------------- 182 (255)
T PF01026_consen 138 ----------------LLEILKEYGPPNLRVIFHCFSGS-PEEAKKFLDLGCYFSFSGAIT--F---------------- 182 (255)
T ss_dssp ----------------HHHHHHHTTGGTSEEEETT--S--HHHHHHHHHTTEEEEEEGGGG--S----------------
T ss_pred ----------------HHHHHHhccccceeEEEecCCCC-HHHHHHHHhcCceEEeccccc--c----------------
Confidence 22333333311 4588986655 466777777775443311110 0
Q ss_pred eEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHH
Q 014320 337 YVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYV 416 (427)
Q Consensus 337 ~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v 416 (427)
.+.+..++.+ +.+ ....+.+-||. |+....+. .|-......++..+..+.+-.+++++++.
T Consensus 183 ------~~~~~~~~~~-~~i-p~drillETD~-P~~~~~~~----------~~~~~~p~~i~~~~~~la~~~~~~~e~~~ 243 (255)
T PF01026_consen 183 ------KNSKKVRELI-KAI-PLDRILLETDA-PYLAPDPY----------RGKPNEPSNIPKVAQALAEIKGISLEELA 243 (255)
T ss_dssp ------TTSHHHHHHH-HHS--GGGEEEE-BT-TSSECTTS----------TTSE--GGGHHHHHHHHHHHHTSTHHHHH
T ss_pred ------cccHHHHHHH-hcC-ChhhEEEcCCC-CcCCcccc----------CCCCCChHHHHHHHHHHHHHcCCCHHHHH
Confidence 0011112222 222 13468899994 66432111 12233333455555455555679999999
Q ss_pred HHHchhhhcC
Q 014320 417 RLTSTEWGRL 426 (427)
Q Consensus 417 ~~~t~npA~~ 426 (427)
+.+..|..|+
T Consensus 244 ~~~~~N~~r~ 253 (255)
T PF01026_consen 244 QIIYENAKRL 253 (255)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
|
; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A .... |
| >PRK09358 adenosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.2e-05 Score=75.80 Aligned_cols=107 Identities=17% Similarity=0.134 Sum_probs=64.8
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEec-CChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEE
Q 014320 211 MINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV 289 (427)
Q Consensus 211 ~~~~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~ 289 (427)
..+.+.+.++++.|+++|+++++|+ |.... ....+.+... |.. .+.
T Consensus 178 ~~~~~~~~~~~~~A~~~g~~~~~H~~E~~~~-~~~~~al~~l-------------------------------g~~-ri~ 224 (340)
T PRK09358 178 GFPPSKFARAFDRARDAGLRLTAHAGEAGGP-ESIWEALDEL-------------------------------GAE-RIG 224 (340)
T ss_pred CCCHHHHHHHHHHHHHCCCCeEEcCCCCCch-hHHHHHHHHc-------------------------------CCc-ccc
Confidence 3578899999999999999999998 43211 1111111111 221 256
Q ss_pred cCCCHH-HHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCC
Q 014320 290 HVMSMD-AMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDH 368 (427)
Q Consensus 290 H~~~~~-~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~ 368 (427)
|+.... .-+.++.++++|+.+.+ ||......... ..+ ..+| ++++++.|+.++||||.
T Consensus 225 Hg~~l~~~~~~~~~l~~~gi~v~~--cP~Sn~~l~~~---------~~~-~~~p---------i~~l~~~Gv~v~lgTD~ 283 (340)
T PRK09358 225 HGVRAIEDPALMARLADRRIPLEV--CPTSNVQTGAV---------PSL-AEHP---------LKTLLDAGVRVTINTDD 283 (340)
T ss_pred hhhhhccCHHHHHHHHHcCCeEEE--CCCcccccccc---------CCc-ccCh---------HHHHHHCCCEEEECCCC
Confidence 665542 12568888999976665 77632221100 000 1233 56799999999999997
Q ss_pred CCC
Q 014320 369 CAF 371 (427)
Q Consensus 369 ~p~ 371 (427)
.++
T Consensus 284 ~~~ 286 (340)
T PRK09358 284 PLV 286 (340)
T ss_pred Ccc
Confidence 443
|
|
| >PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3 | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.1e-06 Score=78.71 Aligned_cols=261 Identities=15% Similarity=0.114 Sum_probs=132.1
Q ss_pred cccccccccccCcCCC--------C----ChhhHHHHHHHHHcCCceEEecCcCCCCCcHHHHHHHH-HHHhccccceec
Q 014320 106 GGIDPHTHLAMEFMGS--------E----TIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAY-EKKAKNSCMDYG 172 (427)
Q Consensus 106 G~ID~H~H~~~~~~g~--------~----~~e~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 172 (427)
|++.+|=|+...+.+. . ..+......+...+.|+.|++|+...........+++. ++.+.+....-+
T Consensus 7 G~tl~HEHl~~d~~~~~~~~~~~~~~~~~~~~~~~~El~~~k~~Gg~tiVd~T~~g~GRd~~~l~~is~~tGv~II~~TG 86 (308)
T PF02126_consen 7 GFTLMHEHLLIDLSGFYKDPDEALDDRDEDVEAAVAELKEFKAAGGRTIVDATPIGLGRDVEALREISRRTGVNIIASTG 86 (308)
T ss_dssp SSEEEEEESEEETTTHHHHTGGGGCGHHHHHHHHHHHHHHHHHTTEEEEEE--SGGGTB-HHHHHHHHHHHT-EEEEEEE
T ss_pred CCeecccCeeecChhhccCCCcchhhhhhhHHHHHHHHHHHHHcCCCEEEecCCcccCcCHHHHHHHHHHhCCeEEEeCC
Confidence 7888888886542211 1 11222233455677899999998644333222333333 223333333444
Q ss_pred eeccccC------CC-hhhHHHHHHHHHHcCCC-------eEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCCh
Q 014320 173 FHMAITK------WD-EVVSDEMEVMVKEKGIN-------SFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG 238 (427)
Q Consensus 173 ~~~~~~~------~~-~~~~~~~~~l~~~~g~~-------~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~ 238 (427)
++..... .+ ++..+.+.+-+ ..|++ .||...+...........++++..++++.|+++++|.+..
T Consensus 87 ~y~~~~~p~~~~~~s~e~la~~~i~Ei-~~GidgT~ikaG~Ik~~~~~~~it~~E~k~lrAaa~A~~~TG~pI~~H~~~g 165 (308)
T PF02126_consen 87 FYKEPFYPEWVREASVEELADLFIREI-EEGIDGTGIKAGIIKEIGSSNPITPLEEKVLRAAARAHKETGAPISTHTGRG 165 (308)
T ss_dssp E-SGGCSCHHHHTSHHHHHHHHHHHHH-HT-STTSSB-ESEEEEEEBTTBCEHHHHHHHHHHHHHHHHHT-EEEEEESTT
T ss_pred CCccccCChhhhcCCHHHHHHHHHHHH-HhcCCCCccchhheeEeeccCCCCHHHHHHHHHHHHHHHHhCCeEEEcCCCC
Confidence 4432111 11 11122222222 34543 5777655422222234567788888888999999998654
Q ss_pred h-hHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCcc
Q 014320 239 D-AVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVS 317 (427)
Q Consensus 239 ~-~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~ 317 (427)
. .-.+..+.+.+.|+. --++.++|+.....++.++.+.+.|+.+-.+..-+
T Consensus 166 ~~~~~e~~~il~e~Gv~----------------------------~~rvvigH~D~~~D~~y~~~la~~G~~l~~D~~g~ 217 (308)
T PF02126_consen 166 TRMGLEQLDILEEEGVD----------------------------PSRVVIGHMDRNPDLDYHRELADRGVYLEFDTIGR 217 (308)
T ss_dssp GTCHHHHHHHHHHTT------------------------------GGGEEETSGGGST-HHHHHHHHHTT-EEEETTTT-
T ss_pred CcCHHHHHHHHHHcCCC----------------------------hhHeEEeCCCCCCCHHHHHHHHhcCCEEEecCCcc
Confidence 3 333444555555542 13688999986666777888888998776655532
Q ss_pred ceeeCcccccCCCcccCceeEEcCCCCCccc---HHHHHHHHhcCC--ceEEecCCCCCChhhhhcCCCCCccCCCCCch
Q 014320 318 GLVLDDSWLWHSDFVTAAKYVMSPPIRASGH---NKALQAALATGI--LQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNG 392 (427)
Q Consensus 318 ~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~---~~~l~~~l~~G~--~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~ 392 (427)
.++ ++. .+|.+.-..| .+.+.+++++|- .+.+|.|-.-..... +.|-.|
T Consensus 218 ~~~---------g~~------~~~~~~~~~d~~ri~~l~~L~~~Gy~~qIlLS~D~~~k~~~~-----------~~gg~g 271 (308)
T PF02126_consen 218 EFS---------GKD------KNPRVGYPPDEERIELLKELIEEGYADQILLSHDIGRKSRLY-----------RYGGGG 271 (308)
T ss_dssp B-T---------TTT------TCHSCTTS-HHHHHHHHHHHHHTTTGGGEEE-HHHESEEGSS-----------SCCHHH
T ss_pred ccc---------Ccc------cCccCCCCCHHHHHHHHHHHHHcCCcCcEEEecccccccccc-----------ccCCCC
Confidence 111 000 0111111222 366778888887 588999943211100 111111
Q ss_pred --h----hHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 393 --I----EERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 393 --~----e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
. +..+|.+. +.+++-+++=++...||+|+
T Consensus 272 ~~~~~i~~~fiP~L~-----~~Gv~~~~i~~ilv~NP~r~ 306 (308)
T PF02126_consen 272 YGYIYILTRFIPRLK-----ERGVSEEDIDKILVENPARI 306 (308)
T ss_dssp HTTTHHHHTHHHHHH-----HTTS-HHHHHHHHTHHHHHH
T ss_pred ccHHHHHHHHHHHHH-----HcCCCHHHHHHHHHHCHHHH
Confidence 1 22334332 35799999999999999985
|
1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A .... |
| >KOG3892 consensus N-acetyl-glucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.7e-06 Score=74.62 Aligned_cols=93 Identities=15% Similarity=0.148 Sum_probs=66.2
Q ss_pred cEEEECcEEEcCCCceeeeEEEeCCeEEEeeCC--CCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhh----H
Q 014320 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPN--INVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDD----F 127 (427)
Q Consensus 54 ~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~--~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~----~ 127 (427)
-+-+.|.+|+-+......+++|+||||..-.+- .+...+...||++|.++.|||||.....+....=..+.++ +
T Consensus 13 llQFtNCrilR~g~l~~edlWVR~GRIldpe~vFFeErt~Ad~riDCgG~IlaPGfIDlQiNGGfGvDFS~dte~~~eGv 92 (407)
T KOG3892|consen 13 LLQFTNCRILRGGKLLREDLWVRGGRILDPEKVFFEERTVADERIDCGGRILAPGFIDLQINGGFGVDFSQDTEDVGEGV 92 (407)
T ss_pred eeeeeeeEEeeCCceeehheeEeCCeecCcccccceeccchhheeccCCeeecCceEEEEecCccccccccchhhhhhhH
Confidence 356889999988888889999999999753321 1212346789999999999999999886654211122233 3
Q ss_pred HHHHHHHHcCCceEEecCc
Q 014320 128 FSGQAAALAGGTTMHIDFV 146 (427)
Q Consensus 128 ~~~~~~~l~~GvTtv~d~~ 146 (427)
..-++..+++|||++....
T Consensus 93 AlVAr~ll~hGvtsf~Pt~ 111 (407)
T KOG3892|consen 93 ALVARQLLSHGVTSFCPTL 111 (407)
T ss_pred HHHHHHHHhcCCCcCCCcc
Confidence 3446778999999998643
|
|
| >COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00066 Score=62.09 Aligned_cols=156 Identities=17% Similarity=0.081 Sum_probs=86.8
Q ss_pred HHHHHcCCceEEecCcCCCCC-cHHHHHHHHHHHhccccceeceecccc------CCC-hhhHHHHHHHHHHcC------
Q 014320 131 QAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAIT------KWD-EVVSDEMEVMVKEKG------ 196 (427)
Q Consensus 131 ~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~l~~~~g------ 196 (427)
.....+.|+-|++|+....-. +.....+-.++.+.+....-+++.... ... ++..+.+.+-+ ++|
T Consensus 54 ~~~~~a~Gg~TIVD~T~~~~GRdv~~m~~vs~atglnIV~~TGfy~~~~~p~~~~~~~i~~~ae~~v~ei-~~Gi~gT~i 132 (316)
T COG1735 54 LKRLMARGGQTIVDATNIGIGRDVLKMRRVAEATGLNIVAATGFYKAAFHPEYFALRPIEELAEFVVKEI-EEGIAGTGI 132 (316)
T ss_pred HHHHHHcCCCeEeeCCccccCcCHHHHHHHHHHhCCcEEEeccccccccchhHHhhCCHHHHHHHHHHHH-HhcccCCcc
Confidence 344577899999998654333 334444444444444333333332111 111 22223333333 344
Q ss_pred -CCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHH
Q 014320 197 -INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRA 275 (427)
Q Consensus 197 -~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~ 275 (427)
+..||...++.+........|+.+.+..++.|.|+++|.+....-.+.++.+.+.|+.-
T Consensus 133 kAGiIk~~~~~~~iTp~Eek~lrAaA~A~~~Tg~Pi~tHt~~gt~g~eq~~il~~egvdl-------------------- 192 (316)
T COG1735 133 KAGIIKEAGGSPAITPLEEKSLRAAARAHKETGAPISTHTPAGTMGLEQLRILAEEGVDL-------------------- 192 (316)
T ss_pred ccceeeeccCcccCCHHHHHHHHHHHHHhhhcCCCeEEeccchhhhHHHHHHHHHcCCCh--------------------
Confidence 33455544433322223446777777778899999999755443333445555555420
Q ss_pred HHHHHhcCCCEEEEcCC-CHHHHHHHHHHhhcCCCEEEecC
Q 014320 276 IRLAEFVNTPLYVVHVM-SMDAMEEIAKARKAGQRVIGEPV 315 (427)
Q Consensus 276 ~~~~~~~g~~~~i~H~~-~~~~~~~i~~~~~~G~~v~~~~~ 315 (427)
.++.++|+. +.+.+.-.+.++.+|+.+..+..
T Consensus 193 --------~~v~igH~d~n~dd~~y~~~l~~~Ga~l~fD~i 225 (316)
T COG1735 193 --------RKVSIGHMDPNTDDVYYQKKLADRGAFLEFDRI 225 (316)
T ss_pred --------hHeeEeccCCCCChHHHHHHHHhcCceEEeccc
Confidence 257899998 67777888889988976655443
|
|
| >cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM) | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0064 Score=56.37 Aligned_cols=50 Identities=26% Similarity=0.321 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCC
Q 014320 185 SDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN 237 (427)
Q Consensus 185 ~~~~~~l~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~ 237 (427)
.++++++. ..|+.++|+.....+.. +++.+..+++.+.++|+++.+|+..
T Consensus 83 ~~~l~~~~-~~g~rGvRl~~~~~~~~--~~~~~~~~~~~~~~~gl~v~~~~~~ 132 (263)
T cd01311 83 DAELKEMH-DAGVRGVRFNFLFGGVD--NKDELDEIAKRAAELGWHVQVYFDA 132 (263)
T ss_pred HHHHHHHH-HCCCeEEEEecccCCCC--CHHHHHHHHHHHHHcCCEEEEEeCH
Confidence 35666665 68999999865443332 7788899999999999999999743
|
This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature. |
| >COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00033 Score=60.85 Aligned_cols=168 Identities=17% Similarity=0.117 Sum_probs=85.9
Q ss_pred ccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCC-cHHHHHHHHH--------HHhccccceeceeccc
Q 014320 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYE--------KKAKNSCMDYGFHMAI 177 (427)
Q Consensus 107 ~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 177 (427)
+||+|+|+..- .-+++...+...+..=+|...|.....+. ...+.++... +.|.+..+.+|.|...
T Consensus 2 ~iD~HiH~d~r-----~~eDlekMa~sGI~~Vit~AhdP~~~~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGvHPr~ 76 (254)
T COG1099 2 YIDSHIHLDVR-----GFEDLEKMALSGIREVITLAHDPYPMKTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGVHPRA 76 (254)
T ss_pred ccccccccccc-----cHHHHHHHHHhChhhhhhcccCCCCcccHHHHHHHHHHHHccchhhHHhhCceeeEEeccCCCC
Confidence 69999998653 34454333333333334444454211111 2223333222 1222344455555432
Q ss_pred c-CCChhhHHHHHHHHHHcCCCeEEEEEecCCCccCC---HHHHHHHHHHHHHcCCcEEEec-CChhhHHHHHHHHHHcC
Q 014320 178 T-KWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMIN---DELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELG 252 (427)
Q Consensus 178 ~-~~~~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~~---~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~~l~~~G 252 (427)
. ..-++.+.++.++....++..|... |.-..+ .+.+++.++.|+++++|+.+|. ....
T Consensus 77 iP~e~~~~l~~L~~~l~~e~VvAiGEi----GLe~~t~~E~evf~~QL~LA~e~dvPviVHTPr~nK------------- 139 (254)
T COG1099 77 IPPELEEVLEELEELLSNEDVVAIGEI----GLEEATDEEKEVFREQLELARELDVPVIVHTPRRNK------------- 139 (254)
T ss_pred CCchHHHHHHHHHhhcccCCeeEeeec----ccccCCHHHHHHHHHHHHHHHHcCCcEEEeCCCCcc-------------
Confidence 2 2234556666666644455555432 122223 4568899999999999999995 3221
Q ss_pred CCCcccccccCCHHHHHHHHHHHHHHHHhcCC---CEEEEcCCCHHHHHHHHHHhhcCCCEEEecCc
Q 014320 253 ITGPEGHALSRPPLLEGEATTRAIRLAEFVNT---PLYVVHVMSMDAMEEIAKARKAGQRVIGEPVV 316 (427)
Q Consensus 253 ~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~---~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p 316 (427)
..+..+.++.....+. .+.|.|++.. .++..-..+..+...++|
T Consensus 140 ----------------~e~t~~ildi~~~~~l~~~lvvIDH~N~e----tv~~vld~e~~vGlTvqP 186 (254)
T COG1099 140 ----------------KEATSKILDILIESGLKPSLVVIDHVNEE----TVDEVLDEEFYVGLTVQP 186 (254)
T ss_pred ----------------hhHHHHHHHHHHHcCCChhheehhcccHH----HHHHHHhccceEEEEecC
Confidence 1233444444444443 3678898543 344444556655555555
|
|
| >cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.054 Score=52.22 Aligned_cols=109 Identities=16% Similarity=0.075 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHHcC--CcEEEec-CChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEE
Q 014320 212 INDELLIEGFKRCKSLG--ALAMVHA-ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV 288 (427)
Q Consensus 212 ~~~~~l~~~~~~a~~~g--~~v~~H~-e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i 288 (427)
.+...+..+++.|++.| +++.+|+ |....- . .+ ...+.+++.+ |. -.|
T Consensus 176 ~~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~~-----------~---------~~----~~~v~~al~l----g~-~RI 226 (345)
T cd01321 176 RPLLDFLPQLLWFPKQCAEIPFFFHAGETNGDG-----------T---------ET----DENLVDALLL----NT-KRI 226 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCCceEeecCCCcCCC-----------C---------CC----hhHHHHHHHh----CC-CcC
Confidence 35778889999999999 9999998 543100 0 00 0112222211 11 235
Q ss_pred EcCCCH-HHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecC
Q 014320 289 VHVMSM-DAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTD 367 (427)
Q Consensus 289 ~H~~~~-~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD 367 (427)
.|.... +.-++++.++++++.+ ++||........ .+.+ ..-.+..+++.|+.++|+||
T Consensus 227 GHG~~~~~dp~ll~~l~~~~I~l--EvCPtSN~~~~~---------------v~~~----~~HPl~~ll~~Gv~vtinTD 285 (345)
T cd01321 227 GHGFALPKHPLLMDLVKKKNIAI--EVCPISNQVLGL---------------VSDL----RNHPAAALLARGVPVVISSD 285 (345)
T ss_pred ccccccCcCHHHHHHHHHcCCeE--EECcchhhhhcc---------------ccch----hhChHHHHHHCCCeEEEeCC
Confidence 565543 2237788888888655 558864332211 0111 11125679999999999999
Q ss_pred CCC
Q 014320 368 HCA 370 (427)
Q Consensus 368 ~~p 370 (427)
...
T Consensus 286 Dp~ 288 (345)
T cd01321 286 DPG 288 (345)
T ss_pred Ccc
Confidence 743
|
|
| >PTZ00124 adenosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.025 Score=54.74 Aligned_cols=131 Identities=13% Similarity=0.165 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHcCCcEEEec-CC--hhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcC
Q 014320 215 ELLIEGFKRCKSLGALAMVHA-EN--GDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (427)
Q Consensus 215 ~~l~~~~~~a~~~g~~v~~H~-e~--~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~ 291 (427)
..+..+++.|++.|+++.+|+ |. ....... .+++.. .+. -.|.|.
T Consensus 206 ~~f~~~f~~Ar~~Gl~~t~HaGE~~~~~~~~~v----------------------------~~ai~~---l~~-~RIGHG 253 (362)
T PTZ00124 206 KPFKDIFDYVREAGVNLTVHAGEDVTLPNLNTL----------------------------YSAIQV---LKV-KRIGHG 253 (362)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCCCCcchhH----------------------------HHHHHH---hCC-Cccccc
Confidence 568899999999999999998 53 2111111 111111 121 236666
Q ss_pred CCH-HHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCC
Q 014320 292 MSM-DAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCA 370 (427)
Q Consensus 292 ~~~-~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p 370 (427)
... +.-++++.++++++.+. +||......... +.+ ..-.+..+++.|+.++|+||...
T Consensus 254 ~~~~~d~~l~~~l~~~~I~lE--vCPtSN~~~~~v---------------~~~----~~HPi~~l~~~Gv~v~InTDDp~ 312 (362)
T PTZ00124 254 IRVAESQELIDMVKEKDILLE--VCPISNVLLNNA---------------KSM----DTHPIRKLYDAGVKVSVNSDDPG 312 (362)
T ss_pred cccCCCHHHHHHHHHcCCeEE--ECCcchhhhhcC---------------Cch----hhHHHHHHHHCCCcEEEeCCCcc
Confidence 543 12377888999886555 588643322110 101 11236679999999999999743
Q ss_pred CChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHH
Q 014320 371 FNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLT 419 (427)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~ 419 (427)
... +.+.--|....+..+++.+++.+++
T Consensus 313 ~~~---------------------t~l~~Ey~~~~~~~gls~~~l~~l~ 340 (362)
T PTZ00124 313 MFL---------------------TNINDDYEELYTHLNFTLADFMKMN 340 (362)
T ss_pred ccC---------------------CChhHHHHHHHHHcCCCHHHHHHHH
Confidence 321 1121222223345679988888763
|
|
| >cd00443 ADA_AMPD Adenosine/AMP deaminase | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.085 Score=50.04 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHHcC-CcEEEec-CChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEc
Q 014320 213 NDELLIEGFKRCKSLG-ALAMVHA-ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH 290 (427)
Q Consensus 213 ~~~~l~~~~~~a~~~g-~~v~~H~-e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H 290 (427)
+...+...++.|++.| +++.+|+ |.... ..+.+++... .-.|.|
T Consensus 151 ~~~~f~~~~~~ar~~g~l~~t~HaGE~~~~-----------------------------~~v~~~~~~~-----~~RIgH 196 (305)
T cd00443 151 PLRDFYSYYEYARRLGLLGLTLHCGETGNR-----------------------------EELLQALLLL-----PDRIGH 196 (305)
T ss_pred CHHHHHHHHHHHHHcCCcceEEeecCCCCh-----------------------------HHHHHHHHhc-----cceeec
Confidence 5778899999999999 9999997 54211 1112222221 234666
Q ss_pred CCCHH-HHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCC
Q 014320 291 VMSMD-AMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHC 369 (427)
Q Consensus 291 ~~~~~-~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~ 369 (427)
..... .-++++.++++|+.+.+ ||......... ..+ ...| +.++++.|+.++|+||..
T Consensus 197 g~~~~~~p~~~~~l~~~~i~ie~--CP~SN~~~~~~---------~~~-~~hP---------~~~~~~~G~~v~i~TDd~ 255 (305)
T cd00443 197 GIFLLKHPELIYLVKLRNIPIEV--CPTSNVVLGTV---------QSY-EKHP---------FMRFFKAGLPVSLSTDDP 255 (305)
T ss_pred eEecCCCHHHHHHHHHcCCEEEE--CcchhhhhcCC---------CCh-hhCh---------HHHHHHCCCeEEEeCCCC
Confidence 65431 12668888888876654 87643222110 000 1133 566899999999999974
Q ss_pred C
Q 014320 370 A 370 (427)
Q Consensus 370 p 370 (427)
.
T Consensus 256 ~ 256 (305)
T cd00443 256 G 256 (305)
T ss_pred c
Confidence 3
|
Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway. |
| >PF00449 Urease_alpha: Urease alpha-subunit, N-terminal domain; InterPro: IPR011612 Urease (urea amidohydrolase, 3 | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0031 Score=48.73 Aligned_cols=37 Identities=19% Similarity=0.305 Sum_probs=31.5
Q ss_pred CccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCC
Q 014320 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNIN 88 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~ 88 (427)
..|++|.|+.|+|..++..++|-|+||||+.||....
T Consensus 65 ~lD~VItNa~IiD~~GI~KADIGIkdG~I~gIGkAGN 101 (121)
T PF00449_consen 65 ALDLVITNALIIDYTGIVKADIGIKDGRIVGIGKAGN 101 (121)
T ss_dssp C-SEEEEEEEEEETTEEEEEEEEEETTEEEEEE-EB-
T ss_pred cccEEEeCcEEEecCCcEEeeEEeeCCEEEEEeccCC
Confidence 4689999999999988999999999999999997543
|
5.1.5 from EC) catalyses the hydrolysis of urea to form ammonia and carbamate. The subunit composition of urease from different sources varies [], but each holoenzyme consists of four structural domains []: three structural domains and a nickel-binding catalytic domain common to amidohydrolases []. Urease is unique among nickel metalloenzymes in that it catalyses a hydrolysis rather than a redox reaction. In Helicobacter pylori, the gamma and beta domains are fused and called the alpha subunit (IPR008223 from INTERPRO). The catalytic subunit (called beta or B) has the same organisation as the Klebsiella alpha subunit. Jack bean (Canavalia ensiformis) urease has a fused gamma-beta-alpha organisation (IPR008221 from INTERPRO). The N-terminal domain is a composite domain and plays a major trimer stabilising role by contacting the catalytic domain of the symmetry related alpha-subunit []. ; GO: 0009039 urease activity, 0016151 nickel ion binding, 0019627 urea metabolic process; PDB: 3LA4_A 2UBP_C 3UBP_C 1UBP_C 1S3T_C 1IE7_C 4UBP_C 1E9Y_B 1E9Z_B 3QGA_O .... |
| >PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily [] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.089 Score=48.58 Aligned_cols=182 Identities=17% Similarity=0.113 Sum_probs=98.7
Q ss_pred ChhhHHHHHHHHHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecC-ChhhHHHHHHHHHHcCCCCcccc
Q 014320 181 DEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE-NGDAVFEGQKRMIELGITGPEGH 259 (427)
Q Consensus 181 ~~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e-~~~~~~~~~~~l~~~G~~~~~~~ 259 (427)
.++..+++++.+...|..++|++....+....++.....+++.|.++|++|.+|+. .......
T Consensus 83 ~~~~~~~l~~~~~~~g~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~H~g~~~~~~~~---------------- 146 (273)
T PF04909_consen 83 PEDAVEELERALQELGFRGVKLHPDLGGFDPDDPRLDDPIFEAAEELGLPVLIHTGMTGFPDAP---------------- 146 (273)
T ss_dssp HHHHHHHHHHHHHTTTESEEEEESSETTCCTTSGHCHHHHHHHHHHHT-EEEEEESHTHHHHHH----------------
T ss_pred chhHHHHHHHhccccceeeeEecCCCCccccccHHHHHHHHHHHHhhccceeeeccccchhhhh----------------
Confidence 45667778777767889999987755544444444445999999999999999964 1100000
Q ss_pred cccCCHHHHHHHHHHHHHHHHhc-CCCEEEEcCCCH--HHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCce
Q 014320 260 ALSRPPLLEGEATTRAIRLAEFV-NTPLYVVHVMSM--DAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAK 336 (427)
Q Consensus 260 ~~~~p~~~e~~a~~~~~~~~~~~-g~~~~i~H~~~~--~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~ 336 (427)
...........++.+. ++++.+.|+... .-.+.++.+++. -+++++++-.... .
T Consensus 147 -------~~~~~~~~~~~~~~~~P~l~ii~~H~G~~~~~~~~~~~l~~~~-~nvy~d~s~~~~~---------------~ 203 (273)
T PF04909_consen 147 -------SDPADPEELEELLERFPDLRIILAHLGGPFPWWEEALRLLDRF-PNVYVDLSGIPPF---------------W 203 (273)
T ss_dssp -------HHHHHHHHHTTHHHHSTTSEEEESGGGTTHHHHHHHHHHHHHH-TTEEEECHSHHSS---------------E
T ss_pred -------HHHHHHHHHHHHHHHhcCCeEEEecCcccchhHHHHHHHHHhC-Ccccccccccccc---------------c
Confidence 0011222233344444 688999999877 322334444432 3677766531100 0
Q ss_pred eEEcCCCCCcccHHHHHHHHhc-C-CceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHH
Q 014320 337 YVMSPPIRASGHNKALQAALAT-G-ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTD 414 (427)
Q Consensus 337 ~~~~pplr~~~~~~~l~~~l~~-G-~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~ 414 (427)
. ..+ .......++++++. | ..+.+|||+ |+...... .+...-... . ..++.++
T Consensus 204 ~-~~~---~~~~~~~l~~~~~~~g~drilfGSD~-P~~~~~~~---------------~~~~~~~~~--~---~~l~~~~ 258 (273)
T PF04909_consen 204 Y-FWP---PSFDRPFLRRAVDEFGPDRILFGSDY-PHPDGASP---------------YEYIWEAYF--L---DDLSEEE 258 (273)
T ss_dssp E-EET---THHCHHHHHHHHHHHTGGGEEEE--T-TSSTHHHH---------------HHHHHHHHH--H---HHSSHHH
T ss_pred c-cCc---ccccHHHHHHHHHHhCCceEEecCCC-CCCCcccc---------------HHHHHHhhh--c---cCCCHHH
Confidence 0 001 11223445555543 2 368999996 76654321 011111100 1 1189999
Q ss_pred HHHHHchhhhcC
Q 014320 415 YVRLTSTEWGRL 426 (427)
Q Consensus 415 ~v~~~t~npA~~ 426 (427)
.-+++..|++|+
T Consensus 259 ~~~i~~~NA~rl 270 (273)
T PF04909_consen 259 REKILYDNARRL 270 (273)
T ss_dssp HHHHHTHHHHHH
T ss_pred HHHHHhHhHHHH
Confidence 999999999874
|
The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. |
| >PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3 | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.059 Score=51.76 Aligned_cols=131 Identities=18% Similarity=0.157 Sum_probs=66.8
Q ss_pred ChhhHHHHHHHHHHc---CCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-CChhhHHHHHHHHHHcCCCCc
Q 014320 181 DEVVSDEMEVMVKEK---GINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITGP 256 (427)
Q Consensus 181 ~~~~~~~~~~l~~~~---g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~~l~~~G~~~~ 256 (427)
.++..+++.++.... ++.++.+.-... ......+..+++.+++.|+++.+|+ |... ...
T Consensus 146 ~~~~~~~~~~~~~~~~~~~vvG~dl~g~E~---~~~~~~~~~~~~~a~~~gl~~t~HaGE~~~-~~~------------- 208 (331)
T PF00962_consen 146 PDEWAEEIVELASKYPDKGVVGFDLAGDED---GGPPLKFAPAFRKAREAGLKLTVHAGETGG-PEH------------- 208 (331)
T ss_dssp THHHHHHHHHHHHHTTTTTEEEEEEESSTT---STTGGGHHHHHHHHHHTT-EEEEEESSSST-HHH-------------
T ss_pred hHHHHHHHHHHHhhcccceEEEEEecCCcc---cCchHHHHHHHhhhcccceeecceecccCC-ccc-------------
Confidence 445555555554332 333443332222 1233448889999999999999998 5432 211
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHH-HHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCc
Q 014320 257 EGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMD-AMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAA 335 (427)
Q Consensus 257 ~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~-~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~ 335 (427)
+..++.. .+. -.|.|..... .-++++.+++++ |..++||.......... ++.
T Consensus 209 ---------------~~~ai~~---l~~-~RIgHG~~~~~~p~l~~~~~~~~--I~iEvcptSN~~~~~~~---~~~--- 261 (331)
T PF00962_consen 209 ---------------IRDAILL---LGA-DRIGHGVRLIKDPELLELLAERQ--IPIEVCPTSNVQLGAVP---SYE--- 261 (331)
T ss_dssp ---------------HHHHHHT---ST--SEEEE-GGGGGSHHHHHHHHHTT---EEEE-HHHHHHTTSSS---TGG---
T ss_pred ---------------ccchhhh---ccc-eeecchhhhhhhhHHHHHHHHhC--CCeeeCCCcCcccceee---ecc---
Confidence 1111221 222 2477776431 236678888877 45566887543332110 110
Q ss_pred eeEEcCCCCCcccHHHHHHHHhcCCceEEecCC
Q 014320 336 KYVMSPPIRASGHNKALQAALATGILQLVGTDH 368 (427)
Q Consensus 336 ~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~ 368 (427)
..| +++.++.|+.++|+||.
T Consensus 262 ----~hP---------~~~~~~~gv~v~i~TDd 281 (331)
T PF00962_consen 262 ----EHP---------LRKLLDAGVPVSINTDD 281 (331)
T ss_dssp ----G-C---------HHHHHHTT-EEEE--BS
T ss_pred ----hhH---------HHHHHHcCCceeccCCC
Confidence 233 56689999999999996
|
5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A .... |
| >COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.81 E-value=2.4 Score=39.86 Aligned_cols=55 Identities=24% Similarity=0.361 Sum_probs=41.1
Q ss_pred hhhHHHHHHHHHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCC
Q 014320 182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN 237 (427)
Q Consensus 182 ~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~ 237 (427)
+...+++++.+.+.|..++|+.-...+. ..++..+..+.+.|.++|+++.+|.-.
T Consensus 112 ~~a~~E~er~v~~~gf~g~~l~p~~~~~-~~~~~~~~pi~~~a~~~gvpv~ihtG~ 166 (293)
T COG2159 112 EAAAEELERRVRELGFVGVKLHPVAQGF-YPDDPRLYPIYEAAEELGVPVVIHTGA 166 (293)
T ss_pred HHHHHHHHHHHHhcCceEEEecccccCC-CCCChHHHHHHHHHHHcCCCEEEEeCC
Confidence 4467788888866788888875433322 235566899999999999999999743
|
|
| >COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.94 Score=43.32 Aligned_cols=108 Identities=14% Similarity=0.106 Sum_probs=64.7
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEc
Q 014320 211 MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH 290 (427)
Q Consensus 211 ~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H 290 (427)
....+.+..+++.+++.|+.+.+||........+. .++..... -.|.|
T Consensus 181 ~~p~~~f~~~f~~~r~~gl~lt~HaGE~~~~~~i~----------------------------~al~~~~~----~rI~H 228 (345)
T COG1816 181 GYPPELFVSLFKLARDNGLKLTIHAGEAGGPESIR----------------------------DALDLLGA----ERIGH 228 (345)
T ss_pred cCCHHHHHHHHHHHHHcCceEEEeccccCCcHHHH----------------------------HHHHHhch----hhhcc
Confidence 34688999999999999999999984222111111 11111100 02455
Q ss_pred CCCH-HHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCC
Q 014320 291 VMSM-DAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHC 369 (427)
Q Consensus 291 ~~~~-~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~ 369 (427)
.-.. +.-++++++.+.++++.+ ||....-. +..+.++. -.+.++++.|+.++|.||..
T Consensus 229 Gi~~~~d~~L~~~l~~~qI~lev--CP~SNi~~---------------~~v~~~~~----hPf~~~~d~Gv~VsLnTDdp 287 (345)
T COG1816 229 GIRAIEDPELLYRLAERQIPLEV--CPLSNIQL---------------GVVPSLAK----HPFKKLFDAGVKVSLNTDDP 287 (345)
T ss_pred ccccccCHHHHHHHHHhCCeeEE--CCcchhhc---------------ccccchhh----CcHHHHHHcCCceEEcCCCh
Confidence 5332 223778888888877765 88633211 01111211 12677999999999999975
Q ss_pred CC
Q 014320 370 AF 371 (427)
Q Consensus 370 p~ 371 (427)
++
T Consensus 288 ~~ 289 (345)
T COG1816 288 LY 289 (345)
T ss_pred hh
Confidence 54
|
|
| >COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.72 Score=40.34 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=29.2
Q ss_pred ccccccccccCc-CCCCChhhHHHHHHHHHcCCceEEecCc
Q 014320 107 GIDPHTHLAMEF-MGSETIDDFFSGQAAALAGGTTMHIDFV 146 (427)
Q Consensus 107 ~ID~H~H~~~~~-~g~~~~e~~~~~~~~~l~~GvTtv~d~~ 146 (427)
+||.|+|+-... .|..+.++-...++.|.+.|||+++...
T Consensus 1 MIDIH~HIlp~iDDGp~s~eesl~ml~~A~~qGvt~iVaTs 41 (254)
T COG4464 1 MIDIHSHILPDIDDGPKSLEESLAMLREAVRQGVTKIVATS 41 (254)
T ss_pred CccccccccCCCCCCCCcHHHHHHHHHHHHHcCceEEeecc
Confidence 699999985431 2445556666678889999999999653
|
|
| >COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.93 Score=43.59 Aligned_cols=113 Identities=17% Similarity=0.170 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHcCCCeEEEEEe---cC-CCccCCHHHHHHHHHHHHHcCCcEEE------ecCChhhHHHHHHHHHHcC
Q 014320 183 VVSDEMEVMVKEKGINSFKFFMA---YK-GSFMINDELLIEGFKRCKSLGALAMV------HAENGDAVFEGQKRMIELG 252 (427)
Q Consensus 183 ~~~~~~~~l~~~~g~~~ik~~~~---~~-~~~~~~~~~l~~~~~~a~~~g~~v~~------H~e~~~~~~~~~~~l~~~G 252 (427)
..++.++.++ ..|++.+-+... .+ ....++.+++++.++.||++|+.+.+ |....+.+....+.+.+.|
T Consensus 14 g~l~~l~~ai-~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~G 92 (347)
T COG0826 14 GNLEDLKAAI-AAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELG 92 (347)
T ss_pred CCHHHHHHHH-HcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcC
Confidence 3456677777 678876643321 11 12357889999999999999986644 4444444566667888888
Q ss_pred CCCcccccccCCHHHHHHHHHHHHHHHHhcC--CCEEEEcCCCHHHHHHHHHHhhcCC
Q 014320 253 ITGPEGHALSRPPLLEGEATTRAIRLAEFVN--TPLYVVHVMSMDAMEEIAKARKAGQ 308 (427)
Q Consensus 253 ~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g--~~~~i~H~~~~~~~~~i~~~~~~G~ 308 (427)
.+..... ---++.++++.+ .++|+++..+....+.++.+++.|.
T Consensus 93 vDaviv~------------Dpg~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~ 138 (347)
T COG0826 93 VDAVIVA------------DPGLIMLARERGPDLPIHVSTQANVTNAETAKFWKELGA 138 (347)
T ss_pred CCEEEEc------------CHHHHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCC
Confidence 7654321 122445566555 7788877766544455555555554
|
|
| >COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.55 E-value=8.6 Score=35.50 Aligned_cols=22 Identities=14% Similarity=0.120 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHcCCcEEEecC
Q 014320 215 ELLIEGFKRCKSLGALAMVHAE 236 (427)
Q Consensus 215 ~~l~~~~~~a~~~g~~v~~H~e 236 (427)
+.+++.++..+++|+.+..+..
T Consensus 124 ~~~r~~~~rL~~~gl~fdl~~~ 145 (279)
T COG3618 124 PAWRANVERLAKLGLHFDLQVD 145 (279)
T ss_pred HHHHHHHHHHHhcCCeEEEEeC
Confidence 6788888888888888777753
|
|
| >cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid | Back alignment and domain information |
|---|
Probab=92.14 E-value=3 Score=40.91 Aligned_cols=72 Identities=13% Similarity=0.115 Sum_probs=46.0
Q ss_pred CCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCE--EEEcCC-CHHHHHHHHHHh-hcCCCEEEecCccceeeCcc
Q 014320 252 GITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL--YVVHVM-SMDAMEEIAKAR-KAGQRVIGEPVVSGLVLDDS 324 (427)
Q Consensus 252 G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~--~i~H~~-~~~~~~~i~~~~-~~G~~v~~~~~p~~l~~~~~ 324 (427)
|...+..+..++|...+...+.+.+..+...+++. ...|.. ....++.+..++ +.|++++ ++|++|+.++.+
T Consensus 154 g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~vh~~~~~~~~~~i~~~~~~~G~~~~-~~~~~~~~~~~~ 229 (387)
T cd01308 154 GEIAISDHRSSQPTVEELARIAAEARVGGLLGGKAGIVHIHLGDGKRALSPIFELIEETEIPIT-QFLPTHINRTAP 229 (387)
T ss_pred ceEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCchHHHHHHHHHHHhcCCCcc-eeECCcccCCHH
Confidence 44444455556788877777777777766555553 344444 345667775544 4598888 899998875544
|
Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides. |
| >TIGR01431 adm_rel adenosine deaminase-related growth factor | Back alignment and domain information |
|---|
Probab=91.62 E-value=7 Score=39.47 Aligned_cols=62 Identities=10% Similarity=-0.040 Sum_probs=36.8
Q ss_pred EEEcCCCHH-HHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEe
Q 014320 287 YVVHVMSMD-AMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVG 365 (427)
Q Consensus 287 ~i~H~~~~~-~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lg 365 (427)
.|.|..... .-++++.++++++ ..|+||......... ..+ .+-| +..++++|++++|+
T Consensus 351 RIGHG~~l~~~P~l~~~vke~~I--~lEvCP~SN~~l~~v---------~~~-~~HP---------l~~lla~Gvpv~In 409 (479)
T TIGR01431 351 RIGHGFALVKHPLVLQMLKERNI--AVEVNPISNQVLQLV---------ADL-RNHP---------CAYLFADNYPMVIS 409 (479)
T ss_pred cccCcccccCCHHHHHHHHHhCC--eEEECccchhhhccc---------CCc-ccCh---------HHHHHHCCCcEEEe
Confidence 366665431 1267888888875 555688633221110 000 1123 56699999999999
Q ss_pred cCCC
Q 014320 366 TDHC 369 (427)
Q Consensus 366 SD~~ 369 (427)
||..
T Consensus 410 SDDP 413 (479)
T TIGR01431 410 SDDP 413 (479)
T ss_pred CCCc
Confidence 9973
|
Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates. |
| >COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.44 E-value=10 Score=34.59 Aligned_cols=66 Identities=17% Similarity=0.183 Sum_probs=43.3
Q ss_pred cHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 348 HNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 348 ~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
.++.+.++++.|....+=||+.- .... ..+.-|. -..|--...+.+++.++.+.+.+..-.||+++
T Consensus 214 sr~~v~~a~~~g~~FmmETDyID--Dp~R-------pgavL~P----ktVPrr~~~i~~~g~~~ee~vy~i~~E~pe~V 279 (285)
T COG1831 214 SRKNVEDAAELGPRFMMETDYID--DPRR-------PGAVLGP----KTVPRRTREILEKGDLTEEDVYRIHVENPERV 279 (285)
T ss_pred cHHHHHHHHhcCCceEeeccccc--Cccc-------CCCcCCc----cchhHHHHHHHHhcCCcHHHHHHHHHhCHHHH
Confidence 45578889999999999999731 1000 0111111 13343233566788899999999999999875
|
|
| >KOG1097 consensus Adenine deaminase/adenosine deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.15 E-value=7.7 Score=37.61 Aligned_cols=102 Identities=18% Similarity=0.165 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEec-CChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcC
Q 014320 213 NDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (427)
Q Consensus 213 ~~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~ 291 (427)
+...+..+...+.+.|+.+.+|| |...... -++..+++. + .-.|.|.
T Consensus 225 p~~~f~~vl~~~~~~gi~~t~HaGE~~~~~~----------------------------~v~~~LD~l---~-~~RIGHG 272 (399)
T KOG1097|consen 225 PLSLFLEVLAKAPAKGIHLTFHAGETNGGAS----------------------------VVKNALDLL---G-TERIGHG 272 (399)
T ss_pred ChhhhHHHHHhhhhcCCcEEEEccccCCChH----------------------------HHHHHHHhh---C-CccccCc
Confidence 45567777777777899999998 5431111 112222211 1 1235565
Q ss_pred CCH--HHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCC
Q 014320 292 MSM--DAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDH 368 (427)
Q Consensus 292 ~~~--~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~ 368 (427)
... ++ ++++++++.++.+. +||.......... + ..+.| +...+++|++.+|+||-
T Consensus 273 ~~l~~dp-~L~~~~k~~nI~lE--iCP~SN~vl~~v~---d-------~rnhp---------~~~~~~~~vP~vI~sDD 329 (399)
T KOG1097|consen 273 YFLTKDP-ELINLLKSRNIALE--ICPISNQVLGLVS---D-------LRNHP---------VARLLAAGVPVVINSDD 329 (399)
T ss_pred eeccCCH-HHHHHHHhcCceEE--Eccchhhheeccc---c-------ccccH---------HHHHHhCCCCEEEeCCC
Confidence 432 22 67888888775555 5886332221110 0 01333 55688999999999995
|
|
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=88.91 E-value=12 Score=36.39 Aligned_cols=127 Identities=15% Similarity=0.101 Sum_probs=68.3
Q ss_pred HHHHHHHHHcCCceEEecCcCCCCC-cHHHHHHHHHHHhccccceeceeccccCCChhhHHHHHHHHHHcCCCeEEEEEe
Q 014320 127 FFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMA 205 (427)
Q Consensus 127 ~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~ 205 (427)
+..-...+..+|++.++-+-.-++. ++...+++.++.|........+..+..-..+-..+-.+++. ..|+++|-+= +
T Consensus 100 Ve~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~-~~g~DSIciK-D 177 (472)
T COG5016 100 VEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELL-EMGVDSICIK-D 177 (472)
T ss_pred HHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHH-HcCCCEEEee-c
Confidence 3455778899999999865332222 55566666666554222222222222112233344455555 6888875321 1
Q ss_pred cCCCccCCHHHHHHHHHHHHH-cCCcEEEecCChhhH-HHHHHHHHHcCCCCcc
Q 014320 206 YKGSFMINDELLIEGFKRCKS-LGALAMVHAENGDAV-FEGQKRMIELGITGPE 257 (427)
Q Consensus 206 ~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~e~~~~~-~~~~~~l~~~G~~~~~ 257 (427)
-.| ..++....++++..++ .++++.+|+.....+ ..+.-...+.|.+...
T Consensus 178 maG--lltP~~ayelVk~iK~~~~~pv~lHtH~TsG~a~m~ylkAvEAGvD~iD 229 (472)
T COG5016 178 MAG--LLTPYEAYELVKAIKKELPVPVELHTHATSGMAEMTYLKAVEAGVDGID 229 (472)
T ss_pred ccc--cCChHHHHHHHHHHHHhcCCeeEEecccccchHHHHHHHHHHhCcchhh
Confidence 122 2567777777777755 688988887443332 2222334566665443
|
|
| >PRK08392 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.52 E-value=17 Score=32.30 Aligned_cols=177 Identities=18% Similarity=0.118 Sum_probs=84.0
Q ss_pred cccccccccCcCCCCChhhHHHHHHHHHcCCceEEe--cCcCCCC-CcHHHHHHHHHHHhccccce--eceeccccCCCh
Q 014320 108 IDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHI--DFVIPIN-GSLTAGFEAYEKKAKNSCMD--YGFHMAITKWDE 182 (427)
Q Consensus 108 ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~--d~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 182 (427)
||.|+|...+ .|..+.++ ..+.|.+.|++.+. |+..... .....-++...+...+..+. .|.-.....
T Consensus 1 ~D~H~HT~~s-d~~~~~~e---~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~~~~~i~il~GiE~~~~~--- 73 (215)
T PRK08392 1 MDLHTHTVYS-DGIGSVRD---NIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWGEESEIVVLAGIEANITP--- 73 (215)
T ss_pred CccccCCCCc-CCcCCHHH---HHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHhhccCceEEEeEEeeecC---
Confidence 7999998765 24444444 47788899999775 4421111 12222222232222211122 222221111
Q ss_pred hhHHHHHHHHHHcCCCeEEEEEecCCCccC--CHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCccccc
Q 014320 183 VVSDEMEVMVKEKGINSFKFFMAYKGSFMI--NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHA 260 (427)
Q Consensus 183 ~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~--~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~ 260 (427)
...+...++.+ ..+.+- .+.|..... -.+.+..+.+.++.....+..|....-.. .+
T Consensus 74 ~~~~~~~~~~~--~~D~vI--~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~---------~~-------- 132 (215)
T PRK08392 74 NGVDITDDFAK--KLDYVI--ASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPY---------IG-------- 132 (215)
T ss_pred CcchhHHHHHh--hCCEEE--EEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccC---------CC--------
Confidence 11223333332 223221 111111111 12445556666666677888885321000 00
Q ss_pred ccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCcc
Q 014320 261 LSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVS 317 (427)
Q Consensus 261 ~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~ 317 (427)
.+. ...+.+.++.+.+.|..+-+.-.......+.++.+++.|++++...-.|
T Consensus 133 --~~~---~~~~~~i~~~~~~~g~~lEiNt~~~~p~~~~l~~~~~~G~~~~igSDAH 184 (215)
T PRK08392 133 --YPS---EEELKEILDLAEAYGKAFEISSRYRVPDLEFIRECIKRGIKLTFASDAH 184 (215)
T ss_pred --Cch---HHHHHHHHHHHHHhCCEEEEeCCCCCCCHHHHHHHHHcCCEEEEeCCCC
Confidence 111 2445677788888887665552111122467888999998887754444
|
|
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=88.47 E-value=12 Score=37.94 Aligned_cols=126 Identities=13% Similarity=0.047 Sum_probs=69.4
Q ss_pred HHHHHHHHHcCCceEEecCcCCCCC-cHHHHHHHHHHHhccccceeceeccccCCChhhHHH-HHHHHHHcCCCeEEEEE
Q 014320 127 FFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDE-MEVMVKEKGINSFKFFM 204 (427)
Q Consensus 127 ~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~g~~~ik~~~ 204 (427)
+....+.+..+|+..++-+-...+. .....++..++.+......+.+..... .+.+...+ .+++. +.|++.|-+-
T Consensus 99 v~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~-~t~e~~~~~a~~l~-~~Gad~I~Ik- 175 (499)
T PRK12330 99 VDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPI-HTVEGFVEQAKRLL-DMGADSICIK- 175 (499)
T ss_pred HHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCC-CCHHHHHHHHHHHH-HcCCCEEEeC-
Confidence 3445677899999998754322221 344455555555543322333322222 23343334 34444 7898876431
Q ss_pred ecCCCccCCHHHHHHHHHHHHHc---CCcEEEecCChhhHHHH-HHHHHHcCCCCcc
Q 014320 205 AYKGSFMINDELLIEGFKRCKSL---GALAMVHAENGDAVFEG-QKRMIELGITGPE 257 (427)
Q Consensus 205 ~~~~~~~~~~~~l~~~~~~a~~~---g~~v~~H~e~~~~~~~~-~~~l~~~G~~~~~ 257 (427)
+.. ...+++...++++..++. ++++.+|+.+....... .-...+.|..-..
T Consensus 176 Dta--Gll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~vD 230 (499)
T PRK12330 176 DMA--ALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVD 230 (499)
T ss_pred CCc--cCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEE
Confidence 222 235788888888888765 68999998766443222 1234566765443
|
|
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=86.86 E-value=17 Score=37.82 Aligned_cols=124 Identities=12% Similarity=0.057 Sum_probs=69.9
Q ss_pred HHHHHHHHHcCCceEEecCcCCCCC-cHHHHHHHHHHHhccccceeceeccccCCChhhHHHHHHHHHHcCCCeEEEEEe
Q 014320 127 FFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMA 205 (427)
Q Consensus 127 ~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~ 205 (427)
+....+.+..+|+..++-+-..++. +....++..++.+......+.+.... ..+.+...++.+.+.+.|++.|-+. +
T Consensus 98 v~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp-~~t~e~~~~~ak~l~~~Gad~I~Ik-D 175 (596)
T PRK14042 98 VRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTSP-VHTLDNFLELGKKLAEMGCDSIAIK-D 175 (596)
T ss_pred HHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecCCC-CCCHHHHHHHHHHHHHcCCCEEEeC-C
Confidence 4445778899999999865432222 45556666666664333333333222 2333444444433337888866431 2
Q ss_pred cCCCccCCHHHHHHHHHHHHH-cCCcEEEecCChhhHHHHH-HHHHHcCCC
Q 014320 206 YKGSFMINDELLIEGFKRCKS-LGALAMVHAENGDAVFEGQ-KRMIELGIT 254 (427)
Q Consensus 206 ~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~e~~~~~~~~~-~~l~~~G~~ 254 (427)
.. ...++....++++..++ .++++++|+.+........ -...+.|..
T Consensus 176 ta--G~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~an~laAieaGad 224 (596)
T PRK14042 176 MA--GLLTPTVTVELYAGLKQATGLPVHLHSHSTSGLASICHYEAVLAGCN 224 (596)
T ss_pred cc--cCCCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcHHHHHHHHHHhCCC
Confidence 22 23578888888877765 5899999987665433221 233456654
|
|
| >PRK10657 isoaspartyl dipeptidase; Provisional | Back alignment and domain information |
|---|
Probab=85.94 E-value=3.3 Score=40.59 Aligned_cols=89 Identities=10% Similarity=0.073 Sum_probs=60.2
Q ss_pred CCcccccccCCHHHHHHHHHHHHHHHHhcCCC--EEEEcCC-CHHHHHHHHHH-hhcCCCEEEecCccceeeCcccccCC
Q 014320 254 TGPEGHALSRPPLLEGEATTRAIRLAEFVNTP--LYVVHVM-SMDAMEEIAKA-RKAGQRVIGEPVVSGLVLDDSWLWHS 329 (427)
Q Consensus 254 ~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~--~~i~H~~-~~~~~~~i~~~-~~~G~~v~~~~~p~~l~~~~~~~~~~ 329 (427)
..+..|...++...+...+.+..+.++..+.+ .++.|++ +...++.++++ ++.|+.+.. +|++|+.++.+.
T Consensus 158 ~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~g~~~~i~vH~~~~~~~l~~v~~~l~~~Gv~~~~-~~~~H~~~~~~~---- 232 (388)
T PRK10657 158 IAISDHRSSQPTVEELARLAAEARVGGLLSGKAGIVHVHMGDGKKGLQPLFELLENTDIPISQ-FLPTHVNRNEPL---- 232 (388)
T ss_pred eeeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCchHHHHHHHHHHHhcCCCcce-eeCcccCCCHHH----
Confidence 34455666677777777777777776665543 7899988 46778888544 688988885 899887653321
Q ss_pred CcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEec
Q 014320 330 DFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGT 366 (427)
Q Consensus 330 ~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgS 366 (427)
.+..++.++.|....+..
T Consensus 233 -------------------~~~~~~~~~~G~~~~v~~ 250 (388)
T PRK10657 233 -------------------FEQALEFAKKGGVIDLTT 250 (388)
T ss_pred -------------------HHHHHHHHHcCCeEEEec
Confidence 123566777788766554
|
|
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=85.80 E-value=24 Score=35.45 Aligned_cols=125 Identities=12% Similarity=0.047 Sum_probs=68.9
Q ss_pred HHHHHHHHHcCCceEEecCcCCCCC-cHHHHHHHHHHHhccccceeceeccccCCChhhHHH-HHHHHHHcCCCeEEEEE
Q 014320 127 FFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDE-MEVMVKEKGINSFKFFM 204 (427)
Q Consensus 127 ~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~g~~~ik~~~ 204 (427)
+....+.+..+|+..++-+...... .....++..++.+.......++.... ..+.+...+ .+++. +.|++.|-+.
T Consensus 107 v~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp-~~t~~y~~~~a~~l~-~~Gad~I~Ik- 183 (468)
T PRK12581 107 VDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTTSP-VHTLNYYLSLVKELV-EMGADSICIK- 183 (468)
T ss_pred HHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCC-cCcHHHHHHHHHHHH-HcCCCEEEEC-
Confidence 3344677899999999865432222 45556666666554332333332221 223333333 34444 7888876431
Q ss_pred ecCCCccCCHHHHHHHHHHHHHc-CCcEEEecCChhhHHHH-HHHHHHcCCCCc
Q 014320 205 AYKGSFMINDELLIEGFKRCKSL-GALAMVHAENGDAVFEG-QKRMIELGITGP 256 (427)
Q Consensus 205 ~~~~~~~~~~~~l~~~~~~a~~~-g~~v~~H~e~~~~~~~~-~~~l~~~G~~~~ 256 (427)
+.. ...+++...++++..++. ++++.+|+.+....... .-...+.|....
T Consensus 184 Dta--G~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~An~laAieAGad~v 235 (468)
T PRK12581 184 DMA--GILTPKAAKELVSGIKAMTNLPLIVHTHATSGISQMTYLAAVEAGADRI 235 (468)
T ss_pred CCC--CCcCHHHHHHHHHHHHhccCCeEEEEeCCCCccHHHHHHHHHHcCCCEE
Confidence 222 235788888888877664 68899998665443222 123446666433
|
|
| >PRK01060 endonuclease IV; Provisional | Back alignment and domain information |
|---|
Probab=85.71 E-value=30 Score=32.05 Aligned_cols=113 Identities=17% Similarity=0.161 Sum_probs=67.4
Q ss_pred HHHHHHHHcCCCeEEEEEecCC---CccCCHHHHHHHHHHHHHcCCc---EEEecCChhhHHHHHHHHHHcCCCCccccc
Q 014320 187 EMEVMVKEKGINSFKFFMAYKG---SFMINDELLIEGFKRCKSLGAL---AMVHAENGDAVFEGQKRMIELGITGPEGHA 260 (427)
Q Consensus 187 ~~~~l~~~~g~~~ik~~~~~~~---~~~~~~~~l~~~~~~a~~~g~~---v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~ 260 (427)
+.-+.+++.|.+++.+++.... ....+++.++++.+.++++|+. +.+|+--.-.. ..
T Consensus 16 ~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl------------~~----- 78 (281)
T PRK01060 16 GAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISPEDILVHAPYLINL------------GN----- 78 (281)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCCCceEEecceEecC------------CC-----
Confidence 3333344789999999876332 1245788899999999999998 88886321000 00
Q ss_pred ccCCH--HHHHHHHHHHHHHHHhcCCCEEEEcCCCH------H-H----HHHHHHH--hhcCCCEEEecCcc
Q 014320 261 LSRPP--LLEGEATTRAIRLAEFVNTPLYVVHVMSM------D-A----MEEIAKA--RKAGQRVIGEPVVS 317 (427)
Q Consensus 261 ~~~p~--~~e~~a~~~~~~~~~~~g~~~~i~H~~~~------~-~----~~~i~~~--~~~G~~v~~~~~p~ 317 (427)
..|. ....+.+.+.++.+.+.|++..+.|.... + . .+.++.+ ...|+.+..|..|.
T Consensus 79 -~d~~~r~~s~~~~~~~i~~A~~lga~~vv~h~G~~~~~~~~~~~~~~~~e~l~~l~~~~~gv~l~iEn~~~ 149 (281)
T PRK01060 79 -PNKEILEKSRDFLIQEIERCAALGAKLLVFHPGSHLGDIDEEDCLARIAESLNEALDKTQGVTIVLENTAG 149 (281)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcHHHHHHHHHHHHHHHHhcCCCCEEEEecCCC
Confidence 0000 01235567788888888888777776421 1 1 1233332 34577788877653
|
|
| >smart00518 AP2Ec AP endonuclease family 2 | Back alignment and domain information |
|---|
Probab=84.70 E-value=33 Score=31.63 Aligned_cols=112 Identities=19% Similarity=0.144 Sum_probs=66.3
Q ss_pred HHHHHHHHHcCCCeEEEEEecCCCc---cCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCccccccc
Q 014320 186 DEMEVMVKEKGINSFKFFMAYKGSF---MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALS 262 (427)
Q Consensus 186 ~~~~~l~~~~g~~~ik~~~~~~~~~---~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~ 262 (427)
+.+.+.. +.|.+.+.+++...... ..+++.+.++.+.++++|+.+.+|+...... .+ .
T Consensus 14 ~~~~~~~-~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~ls~h~p~~~nl------------~s------~ 74 (273)
T smart00518 14 KAFIEAV-DIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDVSVHAPYLINL------------AS------P 74 (273)
T ss_pred HHHHHHH-HcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCceecC------------CC------C
Confidence 3455555 78888888887654222 3677888888888999999999996211000 00 0
Q ss_pred CCHH--HHHHHHHHHHHHHHhcCCCEEEEcCCC------HHH----HHHHHHHh--hcCCCEEEecCc
Q 014320 263 RPPL--LEGEATTRAIRLAEFVNTPLYVVHVMS------MDA----MEEIAKAR--KAGQRVIGEPVV 316 (427)
Q Consensus 263 ~p~~--~e~~a~~~~~~~~~~~g~~~~i~H~~~------~~~----~~~i~~~~--~~G~~v~~~~~p 316 (427)
.|.. ...+.+.+.++.+...|++..+.|... .+. .+.++++. +.|+.+..|..|
T Consensus 75 d~~~r~~~~~~l~~~i~~A~~lGa~~vv~h~g~~~~~~~e~~~~~~~~~l~~l~~~~~gv~l~lEn~~ 142 (273)
T smart00518 75 DKEKVEKSIERLIDEIKRCEELGIKALVFHPGSYLKQSKEEALNRIIESLNEVIDETKGVVILLETTA 142 (273)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHHHHhccCCcEEEEeccC
Confidence 0111 123456778888888888877777632 111 11222222 357777777665
|
These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites |
| >PRK08508 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=84.26 E-value=10 Score=35.42 Aligned_cols=126 Identities=16% Similarity=0.016 Sum_probs=63.2
Q ss_pred hhhHHHHHHHHHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccc
Q 014320 182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHAL 261 (427)
Q Consensus 182 ~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~ 261 (427)
++.++.+++.. ..|+..+-+..+..+......+.+.++++..++.+..+.+|+.......+..+++.+.|+....+...
T Consensus 43 eeI~~~a~~a~-~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~lE 121 (279)
T PRK08508 43 EQIVQEAKMAK-ANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNHNLE 121 (279)
T ss_pred HHHHHHHHHHH-HCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEccccc
Confidence 33444444433 45666554432222222224456667777777665556666433333445556677777644332211
Q ss_pred c--------CCHHHHHHHHHHHHHHHHhcCCC----EEEEcCCCHH-HHHHHHHHhhcCCC
Q 014320 262 S--------RPPLLEGEATTRAIRLAEFVNTP----LYVVHVMSMD-AMEEIAKARKAGQR 309 (427)
Q Consensus 262 ~--------~p~~~e~~a~~~~~~~~~~~g~~----~~i~H~~~~~-~~~~i~~~~~~G~~ 309 (427)
+ .+. ...+...+.++.+++.|.+ +.+.|..+.+ -++.+..+++.+..
T Consensus 122 t~~~~~~~i~~~-~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGEt~ed~~~~l~~lr~L~~~ 181 (279)
T PRK08508 122 TSKEFFPKICTT-HTWEERFQTCENAKEAGLGLCSGGIFGLGESWEDRISFLKSLASLSPH 181 (279)
T ss_pred chHHHhcCCCCC-CCHHHHHHHHHHHHHcCCeecceeEEecCCCHHHHHHHHHHHHcCCCC
Confidence 1 111 1233444555666666654 3455554433 35667777776654
|
|
| >TIGR01496 DHPS dihydropteroate synthase | Back alignment and domain information |
|---|
Probab=82.45 E-value=17 Score=33.41 Aligned_cols=63 Identities=13% Similarity=0.086 Sum_probs=42.4
Q ss_pred hhhHHHHHHHHHHcCCCeEEEEEec--CCCccCCH-HH---HHHHHHHHHHc-CCcEEEecCChhhHHHHH
Q 014320 182 EVVSDEMEVMVKEKGINSFKFFMAY--KGSFMIND-EL---LIEGFKRCKSL-GALAMVHAENGDAVFEGQ 245 (427)
Q Consensus 182 ~~~~~~~~~l~~~~g~~~ik~~~~~--~~~~~~~~-~~---l~~~~~~a~~~-g~~v~~H~e~~~~~~~~~ 245 (427)
++..+..+++. +.|++.|++.... .+....++ ++ +..+++.+++. ++++.+|..+.+.++.+.
T Consensus 23 ~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~~~~vi~~al 92 (257)
T TIGR01496 23 DKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDTYRAEVARAAL 92 (257)
T ss_pred HHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCCHHHHHHHH
Confidence 45566667776 7999999985322 12222333 34 77778888876 999999998887665443
|
This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284. |
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=81.75 E-value=33 Score=34.42 Aligned_cols=123 Identities=16% Similarity=0.068 Sum_probs=64.6
Q ss_pred HHHHHHHHcCCceEEecCcCCCCC-cHHHHHHHHHHHhccccceeceeccccCCChhhHHH-HHHHHHHcCCCeEEEEEe
Q 014320 128 FSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDE-MEVMVKEKGINSFKFFMA 205 (427)
Q Consensus 128 ~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~g~~~ik~~~~ 205 (427)
....+.++.+|+..++-+...... +....++..++.+......+.+... ...+.+...+ .+++. +.|++.|-+. +
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~-p~~~~~~~~~~a~~l~-~~Gad~I~i~-D 175 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTS-PVHTIDYFVKLAKEMQ-EMGADSICIK-D 175 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecC-CCCCHHHHHHHHHHHH-HcCCCEEEEc-C
Confidence 334577889999987754322211 3444444444444322222222222 1223333333 44444 7888876432 2
Q ss_pred cCCCccCCHHHHHHHHHHHHH-cCCcEEEecCChhhHHHHH-HHHHHcCCCC
Q 014320 206 YKGSFMINDELLIEGFKRCKS-LGALAMVHAENGDAVFEGQ-KRMIELGITG 255 (427)
Q Consensus 206 ~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~e~~~~~~~~~-~~l~~~G~~~ 255 (427)
.. ...++....++++..++ .++++.+|+.+........ -...+.|...
T Consensus 176 t~--G~l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN~laAieaGad~ 225 (448)
T PRK12331 176 MA--GILTPYVAYELVKRIKEAVTVPLEVHTHATSGIAEMTYLKAIEAGADI 225 (448)
T ss_pred CC--CCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHHHHHcCCCE
Confidence 22 23578888888887765 5789999987665432221 2344666643
|
|
| >PRK08609 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=81.42 E-value=67 Score=33.39 Aligned_cols=47 Identities=23% Similarity=0.167 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCC--HHHHHHHHHHhhcCCCEEEecCcc
Q 014320 271 ATTRAIRLAEFVNTPLYVVHVMS--MDAMEEIAKARKAGQRVIGEPVVS 317 (427)
Q Consensus 271 a~~~~~~~~~~~g~~~~i~H~~~--~~~~~~i~~~~~~G~~v~~~~~p~ 317 (427)
.+.+.++.+.+.|+.+-+.-.+. ....+.++.+++.|+.++...-.|
T Consensus 480 d~~~i~~~a~~~G~~lEINa~~~r~~~~~~~~~~~~e~Gv~i~igSDAH 528 (570)
T PRK08609 480 NIDQLIELAKETNTALELNANPNRLDLSAEHLKKAQEAGVKLAINTDAH 528 (570)
T ss_pred HHHHHHHHHHHhCCEEEEcCCccccCccHHHHHHHHHcCCEEEEECCCC
Confidence 35666777777887655543221 112467888999998877755544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 427 | ||||
| 2ftw_A | 521 | Crystal Structure Of Dihydropyrimidinase From Dicty | 1e-105 | ||
| 2vr2_A | 541 | Human Dihydropyrimidinase Length = 541 | 9e-99 | ||
| 3dc8_A | 490 | Crystal Structure Of Dihydropyrimidinase From Sinor | 2e-97 | ||
| 1kcx_A | 518 | X-Ray Structure Of Nysgrc Target T-45 Length = 518 | 9e-89 | ||
| 2gse_A | 501 | Crystal Structure Of Human Dihydropyrimidinease-Lik | 2e-86 | ||
| 4b91_A | 484 | Crystal Structure Of Truncated Human Crmp-5 Length | 1e-78 | ||
| 4b90_A | 586 | Crystal Structure Of Wt Human Crmp-5 Length = 586 | 2e-78 | ||
| 3sfw_A | 461 | Crystal Structure Of Dihydropyrimidinase From Brevi | 1e-76 | ||
| 1yny_A | 461 | Molecular Structure Of D-Hydantoinase From A Bacill | 4e-76 | ||
| 1k1d_A | 460 | Crystal Structure Of D-Hydantoinase Length = 460 | 3e-71 | ||
| 1gkp_A | 458 | D-Hydantoinase (Dihydropyrimidinase) From Thermus S | 9e-61 | ||
| 1nfg_A | 457 | Structure Of D-Hydantoinase Length = 457 | 3e-60 | ||
| 2fty_A | 559 | Crystal Structure Of Dihydropyrimidinase From Sacch | 9e-40 | ||
| 1gkr_A | 458 | L-Hydantoinase (Dihydropyrimidinase) From Arthrobac | 6e-24 | ||
| 3e74_A | 473 | Crystal Structure Of E. Coli Allantoinase With Iron | 7e-23 | ||
| 3hm7_A | 448 | Crystal Structure Of Allantoinase From Bacillus Hal | 7e-21 | ||
| 3mpg_A | 428 | Dihydroorotase From Bacillus Anthracis Length = 428 | 2e-20 | ||
| 3gri_A | 424 | The Crystal Structure Of A Dihydroorotase From Stap | 2e-18 | ||
| 1xrf_A | 467 | The Crystal Structure Of A Novel, Latent Dihydrooro | 4e-10 | ||
| 3d6n_A | 422 | Crystal Structure Of Aquifex Dihydroorotase Activat | 4e-10 | ||
| 2z00_A | 426 | Crystal Structure Of Dihydroorotase From Thermus Th | 7e-06 | ||
| 2z00_A | 426 | Crystal Structure Of Dihydroorotase From Thermus Th | 2e-04 | ||
| 3ooq_A | 396 | Crystal Structure Of Amidohydrolase From Thermotoga | 5e-04 |
| >pdb|2FTW|A Chain A, Crystal Structure Of Dihydropyrimidinase From Dictyostelium Discoideum Length = 521 | Back alignment and structure |
|
| >pdb|2VR2|A Chain A, Human Dihydropyrimidinase Length = 541 | Back alignment and structure |
|
| >pdb|3DC8|A Chain A, Crystal Structure Of Dihydropyrimidinase From Sinorhizobium Meliloti Length = 490 | Back alignment and structure |
|
| >pdb|1KCX|A Chain A, X-Ray Structure Of Nysgrc Target T-45 Length = 518 | Back alignment and structure |
|
| >pdb|2GSE|A Chain A, Crystal Structure Of Human Dihydropyrimidinease-Like 2 Length = 501 | Back alignment and structure |
|
| >pdb|4B91|A Chain A, Crystal Structure Of Truncated Human Crmp-5 Length = 484 | Back alignment and structure |
|
| >pdb|4B90|A Chain A, Crystal Structure Of Wt Human Crmp-5 Length = 586 | Back alignment and structure |
|
| >pdb|3SFW|A Chain A, Crystal Structure Of Dihydropyrimidinase From Brevibacillus Agri Nchu1002 Length = 461 | Back alignment and structure |
|
| >pdb|1YNY|A Chain A, Molecular Structure Of D-Hydantoinase From A Bacillus Sp. Ar9: Evidence For Mercury Inhibition Length = 461 | Back alignment and structure |
|
| >pdb|1K1D|A Chain A, Crystal Structure Of D-Hydantoinase Length = 460 | Back alignment and structure |
|
| >pdb|1GKP|A Chain A, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In Space Group C2221 Length = 458 | Back alignment and structure |
|
| >pdb|1NFG|A Chain A, Structure Of D-Hydantoinase Length = 457 | Back alignment and structure |
|
| >pdb|2FTY|A Chain A, Crystal Structure Of Dihydropyrimidinase From Saccharomyces Kluyveri Length = 559 | Back alignment and structure |
|
| >pdb|1GKR|A Chain A, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter Aurescens Length = 458 | Back alignment and structure |
|
| >pdb|3E74|A Chain A, Crystal Structure Of E. Coli Allantoinase With Iron Ions At The Metal Center Length = 473 | Back alignment and structure |
|
| >pdb|3HM7|A Chain A, Crystal Structure Of Allantoinase From Bacillus Halodurans C-125 Length = 448 | Back alignment and structure |
|
| >pdb|3MPG|A Chain A, Dihydroorotase From Bacillus Anthracis Length = 428 | Back alignment and structure |
|
| >pdb|3GRI|A Chain A, The Crystal Structure Of A Dihydroorotase From Staphylococcus Aureus Length = 424 | Back alignment and structure |
|
| >pdb|1XRF|A Chain A, The Crystal Structure Of A Novel, Latent Dihydroorotase From Aquifex Aeolicus At 1.7 A Resolution Length = 467 | Back alignment and structure |
|
| >pdb|3D6N|A Chain A, Crystal Structure Of Aquifex Dihydroorotase Activated By Aspartate Transcarbamoylase Length = 422 | Back alignment and structure |
|
| >pdb|2Z00|A Chain A, Crystal Structure Of Dihydroorotase From Thermus Thermophilus Length = 426 | Back alignment and structure |
|
| >pdb|2Z00|A Chain A, Crystal Structure Of Dihydroorotase From Thermus Thermophilus Length = 426 | Back alignment and structure |
|
| >pdb|3OOQ|A Chain A, Crystal Structure Of Amidohydrolase From Thermotoga Maritima Msb8 Length = 396 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3dc8_A Dihydropyrimidinase; TIM-barrel, hydrolase; HET: KCX; 1.85A {Sinorhizobium meliloti} Length = 490 | Back alignment and structure |
|---|
Score = 515 bits (1329), Expect = 0.0
Identities = 185/369 (50%), Positives = 247/369 (66%), Gaps = 4/369 (1%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
+IKGGT+V A ADV VE G +V + PN+ + LDATG +VMPGGIDPHTH
Sbjct: 2 STVIKGGTIVTADLTYKADVKVEGGRIVEIGPNL---SGAETLDATGCYVMPGGIDPHTH 58
Query: 114 LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYG 172
L M FMG+ + DDF SG AALAGGTTM +DF +P G SL ++ K+ + DY
Sbjct: 59 LEMPFMGTYSSDDFESGTRAALAGGTTMVVDFALPSPGQSLLEALTMWDNKSTRANCDYS 118
Query: 173 FHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAM 232
FHMAIT W E V +EME +VK+KGIN+FK FMAYKG+ M++D+ + F+RC +LGAL +
Sbjct: 119 FHMAITWWGEQVFNEMETIVKDKGINTFKHFMAYKGALMVDDDEMFSSFQRCAALGALPL 178
Query: 233 VHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292
VHAENGD V + Q +++ G +GPE HA SRP +EGEA RAI +A+ P+Y+VH
Sbjct: 179 VHAENGDVVAQLQAKLLAEGNSGPEAHAYSRPAEVEGEAANRAIMIADMAGCPVYIVHTS 238
Query: 293 SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKAL 352
A E I +AR G RV GEP++ L LD++ + D+ AA+ VMSPP R H +L
Sbjct: 239 CEQAHEAIRRARAKGMRVFGEPLIQHLTLDETEYFDKDWDHAARRVMSPPFRNKLHQDSL 298
Query: 353 QAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISV 412
A LA+G LQ+V TDHCAF + QK FG+ DF +IPNG G+E+RM ++W V +G+I++
Sbjct: 299 WAGLASGSLQVVATDHCAFTTEQKRFGVGDFTRIPNGTGGLEDRMPMLWTYGVATGRITM 358
Query: 413 TDYVRLTST 421
++V +TST
Sbjct: 359 NEFVAVTST 367
|
| >1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB: 1gkq_A* Length = 458 | Back alignment and structure |
|---|
Score = 506 bits (1305), Expect = e-179
Identities = 134/369 (36%), Positives = 204/369 (55%), Gaps = 4/369 (1%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
+LIK G ++ A + AD+Y E + + N+ +V+DATGK+V PG IDPH H+
Sbjct: 2 LLIKNGEIITADSRYKADIYAEGETITRIGQNLEAPPGTEVIDATGKYVFPGFIDPHVHI 61
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYG 172
+ FM + D +G AAL GGTT +I+ P G++ ++ KA+ NS DY
Sbjct: 62 YLPFMATFAKDTHETGSKAALMGGTTTYIEMCCPSRNDDALEGYQLWKSKAEGNSYCDYT 121
Query: 173 FHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAM 232
FHMA++K+DE ++ +V + GI+SFK F++YK F ++D + + + K LG +
Sbjct: 122 FHMAVSKFDEKTEGQLREIVAD-GISSFKIFLSYKNFFGVDDGEMYQTLRLAKELGVIVT 180
Query: 233 VHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292
H EN + V Q++++ G TGPE H SRP +E E T R E YVVH+
Sbjct: 181 AHCENAELVGRLQQKLLSEGKTGPEWHEPSRPEAVEAEGTARFATFLETTGATGYVVHLS 240
Query: 293 SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKAL 352
A++ A+ G + E V+ +LD ++ V A KY+MSPP+R + K L
Sbjct: 241 CKPALDAAMAAKARGVPIYIESVIPHFLLDKTY-AERGGVEAMKYIMSPPLRDKRNQKVL 299
Query: 353 QAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISV 412
ALA G + VGTDHC F++ QK G + F IPNG+ IE+R++L++ V G++ +
Sbjct: 300 WDALAQGFIDTVGTDHCPFDTEQKLLGKEAFTAIPNGIPAIEDRVNLLYTYGVSRGRLDI 359
Query: 413 TDYVRLTST 421
+V ST
Sbjct: 360 HRFVDAAST 368
|
| >3sfw_A Dihydropyrimidinase; hydrolase, zinc binding; HET: KCX; 1.73A {Brevibacillus agri} PDB: 1yny_A 1k1d_A* Length = 461 | Back alignment and structure |
|---|
Score = 506 bits (1305), Expect = e-179
Identities = 171/371 (46%), Positives = 225/371 (60%), Gaps = 5/371 (1%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
K I+ GTVV A ADV ++ VVA+ ++ D +V+DATG +++PGGIDPHTH
Sbjct: 2 KKWIRNGTVVTASDTYQADVLIDGEKVVAIGSDLQATDA-EVIDATGYYLLPGGIDPHTH 60
Query: 114 LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDY 171
L M F G+ T D+FF+G AA GGTT +DF + G SL + + +KA+ + +DY
Sbjct: 61 LDMPFGGTVTSDNFFTGTKAAAFGGTTSIVDFCLTSKGESLHSAIATWHEKARGKAVIDY 120
Query: 172 GFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALA 231
GFH+ ++ ++ V +E+E +V +GI S K FMAYK M +DE L + R K LGAL
Sbjct: 121 GFHLMVSDANDHVLEELESVVNNEGITSLKVFMAYKNVLMADDETLFKTLIRAKELGALV 180
Query: 232 MVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291
VHAENGD + K+ + G T P HA +RPP EGEAT RAI L + LYVVHV
Sbjct: 181 QVHAENGDVLDYLTKQALAEGNTDPIYHAYTRPPEAEGEATGRAIALTALADAQLYVVHV 240
Query: 292 MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKA 351
DA+ IA+AR+ G V GE LVLD + L DF AKYV SPP+R +
Sbjct: 241 SCADAVRRIAEAREKGWNVYGETCPQYLVLDITALEKPDFE-GAKYVWSPPLREKWNQDV 299
Query: 352 LQAALATGILQLVGTDHCAFN-STQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQI 410
L +AL GILQ VG+DHC FN S QK G DF KIPNG IE+RM +++ V G+I
Sbjct: 300 LWSALKNGILQTVGSDHCPFNFSGQKELGRRDFTKIPNGGPIIEDRMTILFSEGVRKGKI 359
Query: 411 SVTDYVRLTST 421
S+ +V +TST
Sbjct: 360 SLNQFVDITST 370
|
| >2vm8_A Dihydropyrimidinase-related protein 2; neurogenesis, phosphoprotein, differentiation, CRMP, cytoplasm, TIM barrel, polymorphism, axonal pathfinding; 1.9A {Homo sapiens} PDB: 2gse_A 1kcx_A Length = 501 | Back alignment and structure |
|---|
Score = 504 bits (1300), Expect = e-177
Identities = 169/374 (45%), Positives = 233/374 (62%), Gaps = 3/374 (0%)
Query: 51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
+S ++LIKGG +VN AD+Y+EDG++ + N+ V VK ++A + V+PGGID
Sbjct: 24 TSDRLLIKGGKIVNDDQSFYADIYMEDGLIKQIGENLIVPGGVKTIEAHSRMVIPGGIDV 83
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSC 168
HT M G + DDFF G AALAGGTTM ID V+P G SL A F+ + + A SC
Sbjct: 84 HTRFQMPDQGMTSADDFFQGTKAALAGGTTMIIDHVVPEPGTSLLAAFDQWREWADSKSC 143
Query: 169 MDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG 228
DY H+ I++W + + +EME +VK+ G+NSF +MA+K F + D + E + +G
Sbjct: 144 CDYSLHVDISEWHKGIQEEMEALVKDHGVNSFLVYMAFKDRFQLTDCQIYEVLSVIRDIG 203
Query: 229 ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV 288
A+A VHAENGD + E Q+R+++LGITGPEGH LSRP +E EA RAI +A N PLY+
Sbjct: 204 AIAQVHAENGDIIAEEQQRILDLGITGPEGHVLSRPEEVEAEAVNRAITIANQTNCPLYI 263
Query: 289 VHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGH 348
VMS + E IA+ARK G V GEP+ + L D S W ++ AA +V SPP+
Sbjct: 264 TKVMSKSSAEVIAQARKKGTVVYGEPITASLGTDGSHYWSKNWAKAAAFVTSPPLSPDPT 323
Query: 349 N-KALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVES 407
L + L+ G LQ+ G+ HC FN+ QKA G D+F IP G NG EERM ++WD V +
Sbjct: 324 TPDFLNSLLSCGDLQVTGSAHCTFNTAQKAVGKDNFTLIPEGTNGTEERMSVIWDKAVVT 383
Query: 408 GQISVTDYVRLTST 421
G++ +V +TST
Sbjct: 384 GKMDENQFVAVTST 397
|
| >2vr2_A Dihydropyrimidinase; hydantoinase, metal-binding, disease mutation, dihydropyrimi amidohydrolase, nucleotide metabolism, DPYS, dhpase, hydrolase; 2.80A {Homo sapiens} Length = 541 | Back alignment and structure |
|---|
Score = 502 bits (1295), Expect = e-176
Identities = 193/400 (48%), Positives = 255/400 (63%), Gaps = 10/400 (2%)
Query: 32 NNLFCDAGSEYGGPQCGIQSSSK---ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNIN 88
++ +G + G QS + +LI+GG VVN ++ADV VEDG+V A+ ++
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMAAPSRLLIRGGRVVNDDFSEVADVLVEDGVVRALGHDLL 62
Query: 89 ----VGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHID 144
++VLDA GK V+PGGID HTH+ FMGS +IDDF G AAL+GGTTM ID
Sbjct: 63 PPGGAPAGLRVLDAAGKLVLPGGIDTHTHMQFPFMGSRSIDDFHQGTKAALSGGTTMIID 122
Query: 145 FVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKF 202
F IP G SL FE + A C DY H+A+T W + V +EM+++V++KG+NSFK
Sbjct: 123 FAIPQKGGSLIEAFETWRSWADPKVCCDYSLHVAVTWWSDQVKEEMKILVQDKGVNSFKM 182
Query: 203 FMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALS 262
FMAYK +M+ D L E F RCK +GA+A VHAENGD + EG K+M+ LGITGPEGH L
Sbjct: 183 FMAYKDLYMVTDLELYEAFSRCKEIGAIAQVHAENGDLIAEGAKKMLALGITGPEGHELC 242
Query: 263 RPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLD 322
RP +E EAT RAI +A VN PLY+VHVMS A + IA AR+ G+ V GEP+ + L D
Sbjct: 243 RPEAVEAEATLRAITIASAVNCPLYIVHVMSKSAAKVIADARRDGKVVYGEPIAASLGTD 302
Query: 323 DSWLWHSDFVTAAKYVMSPPIRAS-GHNKALQAALATGILQLVGTDHCAFNSTQKAFGID 381
+ W+ ++ AA +VM PP+R L LA L GTD+C FN+ QKA G D
Sbjct: 303 GTHYWNKEWHHAAHHVMGPPLRPDPSTPDFLMNLLANDDLTTTGTDNCTFNTCQKALGKD 362
Query: 382 DFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTST 421
DF KIPNGVNG+E+RM ++W+ V SG++ +V +TST
Sbjct: 363 DFTKIPNGVNGVEDRMSVIWEKGVHSGKMDENRFVAVTST 402
|
| >2ftw_A Dihydropyrimidine amidohydrolase; (beta-alpha)8-barrel, beta-sandwich; HET: KCX; 2.05A {Dictyostelium discoideum} SCOP: b.92.1.3 c.1.9.6 Length = 521 | Back alignment and structure |
|---|
Score = 501 bits (1291), Expect = e-176
Identities = 202/374 (54%), Positives = 258/374 (68%), Gaps = 3/374 (0%)
Query: 51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
+ ILIK GTVVN +DV VE+GI+ + NI + +KV+DAT K ++PGGID
Sbjct: 6 QTGTILIKNGTVVNDDRYFKSDVLVENGIIKEISKNIEPKEGIKVVDATDKLLLPGGIDT 65
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSC 168
HTH + FMG+ ++DDF G AA+AGGTT IDFVIP G SL ++ ++K A
Sbjct: 66 HTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFVIPTRGQSLLEAYDQWKKWADEKVN 125
Query: 169 MDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG 228
DY H+AIT W E VS EME++VKE+G+NSFK FMAYK SFM+ D+ + FKRCK LG
Sbjct: 126 CDYSLHVAITWWSEQVSREMEILVKERGVNSFKCFMAYKNSFMVTDQEMYHIFKRCKELG 185
Query: 229 ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV 288
A+A VHAENGD VFEGQK+M+E+GITGPEGH LSRP LE EAT RAI +A+ V TP+Y+
Sbjct: 186 AIAQVHAENGDMVFEGQKKMLEMGITGPEGHELSRPEALEAEATNRAIVIADSVCTPVYI 245
Query: 289 VHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGH 348
VHV S+ A + I K RK G RV GEP+ +GL +D S +W+ D+ AA +VM PPIR
Sbjct: 246 VHVQSIGAADVICKHRKEGVRVYGEPIAAGLGVDGSHMWNHDWRHAAAFVMGPPIRPDPR 305
Query: 349 NK-ALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVES 407
K L LA G L VGTD+C F + QKA G DDF KIPNGVNG+E+RM +VW+ V +
Sbjct: 306 TKGVLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFTKIPNGVNGVEDRMSIVWENGVNT 365
Query: 408 GQISVTDYVRLTST 421
G+++ +VR TS+
Sbjct: 366 GKLTWCQFVRATSS 379
|
| >1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia pickettii} SCOP: b.92.1.3 c.1.9.6 Length = 457 | Back alignment and structure |
|---|
Score = 492 bits (1270), Expect = e-173
Identities = 146/371 (39%), Positives = 212/371 (57%), Gaps = 8/371 (2%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
I+IK GT+V A AD+ ++DG + + + + + +DA G++V PGGID HTH
Sbjct: 2 DIIIKNGTIVTADGISRADLGIKDGKITQIGGALGPAE--RTIDAAGRYVFPGGIDVHTH 59
Query: 114 LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDY 171
+ +++ D F + AA GGTT +DF G SL ++ A S +DY
Sbjct: 60 VETVSFNTQSADTFATATVAAACGGTTTIVDFCQQDRGHSLAEAVAKWDGMAGGKSAIDY 119
Query: 172 GFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALA 231
G+H+ + + V +E+EV+ + GI SFK FMAY+G MI+D L++ + G+L
Sbjct: 120 GYHIIVLDPTDSVIEELEVLP-DLGITSFKVFMAYRGMNMIDDVTLLKTLDKAVKTGSLV 178
Query: 232 MVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291
MVHAENGDA + + + G T P HALSRPP +E EAT RA+ LAE VN P+Y+VHV
Sbjct: 179 MVHAENGDAADYLRDKFVAEGKTAPIYHALSRPPRVEAEATARALALAEIVNAPIYIVHV 238
Query: 292 MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKA 351
+++EE+ +A+ G R + E L L L DF AKYV +PP RA +
Sbjct: 239 TCEESLEEVMRAKSRGVRALAETCTHYLYLTKEDLERPDF-EGAKYVFTPPARAKKDHDV 297
Query: 352 LQAALATGILQLVGTDHCAFN-STQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQI 410
L AL G+ + V +DHC++ K G +DFR IPNG G+EER+ +V+ V G+I
Sbjct: 298 LWNALRNGVFETVSSDHCSWLFKGHKDRGRNDFRAIPNGAPGVEERLMMVY-QGVNEGRI 356
Query: 411 SVTDYVRLTST 421
S+T +V L +T
Sbjct: 357 SLTQFVELVAT 367
|
| >1gkr_A Hydantoinase, non-ATP dependent L-selective hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX; 2.60A {Arthrobacter aurescens} SCOP: b.92.1.3 c.1.9.6 Length = 458 | Back alignment and structure |
|---|
Score = 469 bits (1210), Expect = e-164
Identities = 96/374 (25%), Positives = 162/374 (43%), Gaps = 14/374 (3%)
Query: 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
+++K +V++ AD+ V+DG V A+ + + + + +DA GKFVMPG +D H
Sbjct: 2 FDVIVKNCRLVSSDGITEADILVKDGKVAAISADTSDVEASRTIDAGGKFVMPGVVDEHV 61
Query: 113 HLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMD 170
H+ ++ F +A GG T I+ I + F +K+A +D
Sbjct: 62 HI-IDMDLKNRYGRFELDSESAAVGGITTIIEMPITFPPTTTLDAFLEKKKQAGQRLKVD 120
Query: 171 YGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM---INDELLIEGFKRCKSL 227
+ + + E+ M + G FK MA M ++D L E F+ +
Sbjct: 121 FALYGGGVPGNL---PEIRKMH-DAGAVGFKSMMAASVPGMFDAVSDGELFEIFQEIAAC 176
Query: 228 GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287
G++ +VHAEN + QK++ G + S+P E EA RA+ L + L
Sbjct: 177 GSVIVVHAENETIIQALQKQIKAAGGKDMAAYEASQPVFQENEAIQRALLLQKEAGCRLI 236
Query: 288 VVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASG 347
V+HV + D +E I +A+ GQ V E L + ++PP+R++
Sbjct: 237 VLHVSNPDGVELIHQAQSEGQDVHCESGPQYLNITTDDAERI----GPYMKVAPPVRSAE 292
Query: 348 HNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVES 407
N L L G++ +G+DH K G D K NG G+E + ++ V
Sbjct: 293 MNIRLWEQLENGLIDTLGSDHGGHPVEDKEPGWKDVWKAGNGALGLETSLPMMLTNGVNK 352
Query: 408 GQISVTDYVRLTST 421
G++S+ V +
Sbjct: 353 GRLSLERLVEVMCE 366
|
| >2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich, hydrolase; HET: KCX; 2.40A {Lachancea kluyveri} SCOP: b.92.1.3 c.1.9.6 PDB: 2fvk_A* 2fvm_A* Length = 559 | Back alignment and structure |
|---|
Score = 439 bits (1132), Expect = e-151
Identities = 117/422 (27%), Positives = 188/422 (44%), Gaps = 56/422 (13%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
++IK G + A A++ V +G V + +I+ +V+DA G F+ PGGID H H+
Sbjct: 5 LIIKNGIICTASDIYAAEIAVNNGKVQLIAASIDPSLGSEVIDAEGAFITPGGIDAHVHV 64
Query: 115 AMEF-MGSETIDDFFSGQAAALAGGTTMHIDFVIP-INGSLTAGFEA------YEKKAKN 166
+ + +D +A+AGGTT + F ++ + E +
Sbjct: 65 DEPLKLLGDVVDTMEHATRSAVAGGTTTVVAFSTQDVSKKGPSALAESVKLDVDEYSEQT 124
Query: 167 SCMDYGFHMAITKWDEVVSDEMEVM-------VKEKGINSFKFFMAYKGSFMINDELLIE 219
DYG H+ + + ++ + E++ + G++S K FM Y G I+D ++
Sbjct: 125 LYCDYGLHLILFQIEKPSVEARELLDVQLQAAYNDYGVSSVKMFMTYPG-LQISDYDIMS 183
Query: 220 GFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLA 279
+ G M+HAENGD V + + E G+T H +SRP ++EGEAT RAI LA
Sbjct: 184 AMYATRKNGFTTMLHAENGDMVKWMIEALEEQGLTDAYYHGVSRPSIVEGEATNRAITLA 243
Query: 280 EFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVT------ 333
++TP+ VHV S A E I +A+ G +V E +L D+
Sbjct: 244 TTMDTPILFVHVSSPQAAEVIKQAQTKGLKVYAETCPQYALLSDAITRCHHHGEVESYGV 303
Query: 334 --------------------AAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNS 373
+KY+ SPPIR G K++ + G +VG+DHC++N
Sbjct: 304 GIDLSSISESPFTNPDDRFIGSKYICSPPIRPEGTQKSIWKGMNNGTFTIVGSDHCSYNY 363
Query: 374 TQKAFGI-------------DDFRKIPNGVNGIEERMHLVWDTMVESGQI-SVTDYVRLT 419
+K +FR IPNG+ G+ RM L++D G + S+ V +
Sbjct: 364 YEKTSTASKHRAFDPENNKNGEFRYIPNGLPGVCTRMPLLYDYGYLRGNLTSMMKLVEIQ 423
Query: 420 ST 421
T
Sbjct: 424 CT 425
|
| >3e74_A Allantoinase; (beta/alpha)8-barrel domain, small beta-sheet domain, hydrolase, metal-binding, purine metabolism, zinc; HET: KCX; 2.10A {Escherichia coli} Length = 473 | Back alignment and structure |
|---|
Score = 364 bits (936), Expect = e-123
Identities = 96/377 (25%), Positives = 162/377 (42%), Gaps = 25/377 (6%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
++IK GTV+ + ++ D+ V+ G + A+ ++ +V+DA+G V PG +D HTH+
Sbjct: 25 LIIKNGTVILENEARVVDIAVKGGKIAAIGQDLGDAK--EVMDASGLVVSPGMVDAHTHI 82
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLT--AGFEAYEKKAKNSCM-DY 171
+ G + + +G AA GG T I+ + + A E AK D
Sbjct: 83 SE--PGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDA 140
Query: 172 GFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM-------INDELLIEGFKRC 224
+ ++ D + + + G+ FK F+A G +ND +G ++
Sbjct: 141 AQLGGLVSYNI---DRLHELDEV-GVVGFKCFVATCGDRGIDNDFRDVNDWQFFKGAQKL 196
Query: 225 KSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNT 284
LG +VH EN E + G + SRP E EA R + LA+
Sbjct: 197 GELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGC 256
Query: 285 PLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIR 344
L+V HV S + +EE+ +AR+ GQ + E VLD SPPIR
Sbjct: 257 RLHVCHVSSPEGVEEVTRARQEGQDITCESCPHYFVLDTDQFEEIG----TLAKCSPPIR 312
Query: 345 ASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTM 404
+ K + L G + + +DH KA + K G+ G++ M +++D
Sbjct: 313 DLENQKGMWEKLFNGEIDCLVSDHSPCPPEMKA---GNIMKAWGGIAGLQSCMDVMFDEA 369
Query: 405 VESGQISVTDYVRLTST 421
V+ +S+ + +L +T
Sbjct: 370 VQKRGMSLPMFGKLMAT 386
|
| >3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure initiative, PSI-2, NEW YORK structural genomix research CON nysgxrc; 2.60A {Bacillus halodurans} Length = 448 | Back alignment and structure |
|---|
Score = 358 bits (922), Expect = e-121
Identities = 92/375 (24%), Positives = 160/375 (42%), Gaps = 21/375 (5%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV-GDDVKVLDATGKFVMPGGIDPHTH 113
++I+ TVV ADV + +GIV A+ ++ DD +D TG + PG +D H H
Sbjct: 8 LIIRSSTVVTETTTYRADVAIRNGIVSAITEPGSISSDDGPAIDGTGLHLFPGMVDVHVH 67
Query: 114 LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLT--AGFEAYEKKAKNSCM-D 170
G + F SG + AGG T + D + N + + A + D
Sbjct: 68 FNE--PGRTEWEGFASGSKSLAAGGVTTYFDMPLNSNPPTITREELDKKRQLANEKSLVD 125
Query: 171 YGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGS---FMINDELLIEGFKRCKSL 227
Y F + + D ++ + G+ FK FM+ G+ +DE L++G K+ +L
Sbjct: 126 YRFWGGLVPGNI---DHLQDLHDG-GVIGFKAFMSECGTDDFQFSHDETLLKGMKKIAAL 181
Query: 228 GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287
G++ VHAE+ + V IE + ++ +RP + E EA R +R A+ P++
Sbjct: 182 GSILAVHAESNEMVNALTTIAIEEQRLTVKDYSEARPIVSELEAVERILRFAQLTCCPIH 241
Query: 288 VVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVT-AAKYVMSPPIRAS 346
+ HV S ++ I +A+ G V E L+ +F +PP+R
Sbjct: 242 ICHVSSRKVLKRIKQAKGEGVNVSVETCPHYLLFSL-----DEFAEIGYLAKCAPPLRER 296
Query: 347 GHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVE 406
+ L L G + L+ +DH K ++ G+ G + + ++
Sbjct: 297 QEVEDLWDGLMAGEIDLISSDHSPSLPQMKTGK--TIFEVWGGIAGCQNTLAVMLTEGYH 354
Query: 407 SGQISVTDYVRLTST 421
++ +T V+L ST
Sbjct: 355 KRKMPLTQIVQLLST 369
|
| >2gwn_A Dihydroorotase; zinc-binding prote structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; HET: KCX GOL; 1.85A {Porphyromonas gingivalis} Length = 452 | Back alignment and structure |
|---|
Score = 202 bits (515), Expect = 2e-60
Identities = 73/379 (19%), Positives = 141/379 (37%), Gaps = 28/379 (7%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDV----KVLDATGKFVMPGGID 109
KIL++ + N V ++ + + DD +V++ +G + PG ID
Sbjct: 5 KILLRNALITNEGKTFPGSVMIDGAFISRIIEGELPADDNLSADEVIECSGLRLFPGCID 64
Query: 110 PHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDF--VIPINGSLTAGFEAYEKKAKN- 166
H E G S AA+AGG T +D P + +
Sbjct: 65 DQVHF-REP-GLTHKATIASESRAAVAGGVTSFMDMPNTNPPTTMWER-LLEKRQIGADT 121
Query: 167 SCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY-KGSFMINDELLIEGFKRCK 225
+ +YGF T D + DE++ + + + K F+ G+ +++++ +E K
Sbjct: 122 AWANYGFFFGGTN-DNI--DEIKRV-DKHLVPGLKLFLGSSTGNMLVDNKETLE--KIFG 175
Query: 226 SLGALAMVHAENGDAVFEGQKRMIELGIT--GPEGHALSRPPLLEGEATTRAIRLAEFVN 283
L H E + + ++ H L R ++ A+ LAE +N
Sbjct: 176 ECDLLIATHCEKEEIIRANKEHYKAKYGNDLDIHFHPLIRSEEACYRSSAEAVELAERMN 235
Query: 284 TPLYVVHVMSMDAMEEIAKARK-AGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPP 342
L+++H+ + + A +R+ E V L D+ K +P
Sbjct: 236 ARLHILHLSTEKELSLFRNDIPTAQKRITSEVCVHHLWFSDTDY--GRLGNRIK--WNPA 291
Query: 343 IRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWD 402
I+ +AL+AA+ G + ++ TDH +K + +G ++ + +
Sbjct: 292 IKKESDREALRAAVRNGRIDIIATDHAPHLLREKE---GSCLQAASGGPLVQHSLLALL- 347
Query: 403 TMVESGQISVTDYVRLTST 421
+ G S+ + V T+
Sbjct: 348 ELCNQGIFSIEEIVSKTAH 366
|
| >3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding, pyrimidine biosynthesis, structural genomics; 2.00A {Staphylococcus aureus subsp} Length = 424 | Back alignment and structure |
|---|
Score = 150 bits (382), Expect = 2e-41
Identities = 98/414 (23%), Positives = 158/414 (38%), Gaps = 88/414 (21%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
LIK G V+ Q AD+ ++ ++ + P I + V ++DA G FV PG +D H HL
Sbjct: 2 KLIKNGKVLQNGELQQADILIDGKVIKQIAPAIEPSNGVDIIDAKGHFVSPGFVDVHVHL 61
Query: 115 AMEFMGSETIDDFFSGQAAALAGG-TTMH--------------IDFVI-------PIN-- 150
E G E + +G AA GG TT+ + + +
Sbjct: 62 R-E-PGGEYKETIETGTKAAARGGFTTVCPMPNTRPVPDSVEHFEALQKLIDDNAQVRVL 119
Query: 151 --GSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKG 208
S+T G + + + ++G +F G
Sbjct: 120 PYASITTRQL-------------GKELV----------DFPAL-VKEGAFAF----TDDG 151
Query: 209 SFMINDELLIEGFKRCKSLGALAMVHAE-----NGDAVFEGQKRMIELGITGPEGHALSR 263
+ ++ EG + + H E G A+ EG KR ELGI G
Sbjct: 152 VGVQTASMMYEGMIEAAKVNKAIVAHCEDNSLIYGGAMHEG-KRSKELGIPG-------I 203
Query: 264 PPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSG--LVL 321
P + E R + LAE +V HV + +++ I A++AG V E V+ L+L
Sbjct: 204 PNICESVQIARDVLLAEAAGCHYHVCHVSTKESVRVIRDAKRAGIHVTAE--VTPHHLLL 261
Query: 322 DDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGID 381
+ + K M+PP+R++ +AL L G + + TDH +KA
Sbjct: 262 TEDDI--PGNNAIYK--MNPPLRSTEDREALLEGLLDGTIDCIATDHAPHARDEKA---Q 314
Query: 382 DFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTST--------EWGRLK 427
K P G+ G E L++ V++G ++ V + E+G LK
Sbjct: 315 PMEKAPFGIVGSETAFPLLYTHFVKNGDWTLQQLVDYLTIKPCETFNLEYGTLK 368
|
| >3mpg_A Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus anthracis} Length = 428 | Back alignment and structure |
|---|
Score = 144 bits (367), Expect = 3e-39
Identities = 102/416 (24%), Positives = 163/416 (39%), Gaps = 90/416 (21%)
Query: 54 KILIKGGTVVN-AHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
L K G +N D+ V+DG + V NI D+ +V+D GK + PG +D H
Sbjct: 2 NYLFKNGRYMNEEGKIVATDLLVQDGKIAKVAENIT-ADNAEVIDVNGKLIAPGLVDVHV 60
Query: 113 HLAMEFMGSETIDDFFSGQAAALAGG-TTMH--------------IDFVI-------PIN 150
HL E G E + +G AA GG TT+ ++ + +N
Sbjct: 61 HLR-E-PGGEHKETIETGTLAAAKGGFTTICAMPNTRPVPDCREHMEDLQNRIKEKAHVN 118
Query: 151 ----GSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY 206
G++T G M + E + KE G +F
Sbjct: 119 VLPYGAITVRQA-------------GSEMT----------DFETL-KELGAFAF----TD 150
Query: 207 KGSFMINDELLIEGFKRCKSLGALAMVHAE-----NGDAVFEGQKRMIELGITGPEGHAL 261
G + + +++ KR L + H E N V EG K + G+ G
Sbjct: 151 DGVGVQDASMMLAAMKRAAKLNMAVVAHCEENTLINKGCVHEG-KFSEKHGLNG------ 203
Query: 262 SRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSG--L 319
P + E R I LAE + +V HV + ++ I A++AG +V E V+ L
Sbjct: 204 -IPSVCESVHIARDILLAEAADCHYHVCHVSTKGSVRVIRDAKRAGIKVTAE--VTPHHL 260
Query: 320 VLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFG 379
VL + + K M+PP+R ++AL L G + ++ TDH + +KA
Sbjct: 261 VLCEDDI--PSADPNFK--MNPPLRGKEDHEALIEGLLDGTIDMIATDHAPHTAEEKA-- 314
Query: 380 IDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTST--------EWGRLK 427
+ P G+ G E L++ +V+ G I++ ++ + E GRLK
Sbjct: 315 -QGIERAPFGITGFETAFPLLYTNLVKKGIITLEQLIQFLTEKPADTFGLEAGRLK 369
|
| >1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine; 1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB: 1xrf_A 3d6n_A* Length = 467 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 2e-36
Identities = 86/418 (20%), Positives = 161/418 (38%), Gaps = 94/418 (22%)
Query: 53 SKILIKGGTVVNAHHQ--QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
K+++K G V++ D+ VE+G + + NI + +++DA G V PG ID
Sbjct: 47 LKLIVKNGYVIDPSQNLEGEFDILVENGKIKKIDKNIL-VPEAEIIDAKGLIVCPGFIDI 105
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGG-TTMH--------------IDFVI-------- 147
H HL + G +D SG A+AGG TT+ +++++
Sbjct: 106 HVHLR-D-PGQTYKEDIESGSRCAVAGGFTTIVCMPNTNPPIDNTTVVNYILQKSKSVGL 163
Query: 148 ----PINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFF 203
P G++T G + G +A + + KE G +F
Sbjct: 164 CRVLPT-GTITKGRK-------------GKEIA----------DFYSL-KEAGCVAF--- 195
Query: 204 MAYKGSFMINDELLIEGFKRCKSLGALAMVHAE----NGDAVFEGQKRMIELGITGPEGH 259
GS +++ ++ + + LG M H E + EG + LG++
Sbjct: 196 -TDDGSPVMDSSVMRKALELASQLGVPIMDHCEDDKLAYGVINEG-EVSALLGLSS---- 249
Query: 260 ALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSG- 318
R P E R LA+ +++ HV + ++E I ++ G ++ E V+
Sbjct: 250 ---RAPEAEEIQIARDGILAQRTGGHVHIQHVSTKLSLEIIEFFKEKGVKITCE--VNPN 304
Query: 319 -LVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKA 377
L+ + + + A+ ++PP+R AL + GI+ TDH + +K
Sbjct: 305 HLLFTEREV--LNSGANAR--VNPPLRKKEDRLALIEGVKRGIIDCFATDHAPHQTFEK- 359
Query: 378 FGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTST--------EWGRLK 427
+ G+ G++ + + G IS+ + + + + G LK
Sbjct: 360 ---ELVEFAMPGIIGLQTALPSAL-ELYRKGIISLKKLIEMFTINPARIIGVDLGTLK 413
|
| >1e9y_B Urease subunit beta; hydrolase, dodecamer; HET: KCX; 3.00A {Helicobacter pylori} SCOP: b.92.1.1 c.1.9.2 PDB: 1e9z_B* 3qga_C* 3qgk_C* Length = 569 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 9e-35
Identities = 49/392 (12%), Positives = 103/392 (26%), Gaps = 49/392 (12%)
Query: 43 GGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVA------------VQPNINVG 90
+ ++I +V+ AD+ ++DG + V+ N++VG
Sbjct: 56 SQSNNPSKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVG 115
Query: 91 DDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPIN 150
+ L G V GGID H H + F SG + GGT
Sbjct: 116 PATEALAGEGLIVTAGGIDTHIHFISP---QQIPTAFASGVTTMIGGGTGPADGTNATTI 172
Query: 151 GSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSF 210
+ + A+ M+ GF ++ + E G FK + +
Sbjct: 173 TPGRRNLKWMLRAAEEYSMNLGFLAKGNASNDASLADQI----EAGAIGFKIHEDWGTTP 228
Query: 211 MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGE 270
+ L +H + + + M + EG
Sbjct: 229 SAINHAL----DVADKYDVQVAIHTDTLNEAGCVEDTMAAI------AGRTMHTFHTEGA 278
Query: 271 ATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSD 330
A + + + + V E +++ S
Sbjct: 279 GGGHAPDIIKVAGEHNILPA----------STNPTIPFTVNTEAEHMDMLMVCHHKDKSI 328
Query: 331 FVTAAKYVMSPPIRASGHNKALQAALA-TGILQLVGTDHCAFNSTQKAFGIDDFRKIPNG 389
++ S A + L G + +D A + +
Sbjct: 329 KE-DVQFADSRIRP---QTIAAEDTLHDMGAFSITSSDSQAMGRVG-----EVITRTWQT 379
Query: 390 VNGIEERMHLVWDTMVESGQISVTDYVRLTST 421
+ ++ + + ++ + Y+ +
Sbjct: 380 ADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTI 411
|
| >2z00_A Dihydroorotase; zinc binding protein, hydrolase, metal-binding, pyrimidine biosynthesis, structural genomics, NPPSFA; 2.42A {Thermus thermophilus} Length = 426 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 2e-34
Identities = 90/408 (22%), Positives = 148/408 (36%), Gaps = 93/408 (22%)
Query: 55 ILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
ILI+ +V+A + ADV + +G +++++ G+ +V+D TG F+ PG +D H H
Sbjct: 2 ILIRNVRLVDARGERGPADVLIGEGRILSLEG----GEAKQVVDGTGCFLAPGFLDLHAH 57
Query: 114 LAMEFMGSETIDDFFSGQAAALAGG-TTMH--------------IDFVI----------- 147
L E G E +D FSG AA+ GG T + + +
Sbjct: 58 LR-E-PGEEVKEDLFSGLLAAVRGGYTDLVSMPNTKPPVDTPEAVRALKEKAKALGLARL 115
Query: 148 -PINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY 206
P +LT E G + ++ +E G
Sbjct: 116 HPA-AALTEKQE-------------GKTLT----------PAGLL-REAGAVLL----TD 146
Query: 207 KGSFMINDELLIEGFKRCKSLGALAMVHAE-----NGDAVFEGQKRMIELGITGPEGHAL 261
G + +L G LG VHAE + +G LG+ G
Sbjct: 147 DGRTNEDAGVLAAGLLMAAPLGLPVAVHAEDAGLRRNGVMNDG-PLADLLGLPG------ 199
Query: 262 SRPPLLEGEATTRAIRLAEFVNTP------LYVVHVMSMDAMEEIAKARKAGQRVIGEPV 315
PP E R + + + L+V H+ + +E + +A++AG V E
Sbjct: 200 -NPPEAEAARIARDLEVLRYALRRSPATPRLHVQHLSTKRGLELVREAKRAGLPVTAE-- 256
Query: 316 VSG--LVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNS 373
+ L L + L F K ++PP+R +AL L G L + TDH
Sbjct: 257 ATPHHLTLTEEAL--RTFDPLFK--VAPPLRGEEDREALLEGLLDGTLDAIATDHAPHTL 312
Query: 374 TQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTST 421
+K D + P G+ +E L++ + + V L +
Sbjct: 313 AEKE---KDLLRAPFGIPSLEVAFPLLYTELHLKRGFPLQRLVELFTD 357
|
| >4ubp_C Protein (urease (chain C)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.92.1.1 c.1.9.2 PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 1ie7_C* Length = 570 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 2e-29
Identities = 60/387 (15%), Positives = 103/387 (26%), Gaps = 63/387 (16%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVA------------VQPNINVGDDVKVLDATGKF 102
+L+ +++ AD+ V+DG +V V PN+ VG +V+ A GK
Sbjct: 69 LLLTNALILDYTGIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKI 128
Query: 103 VMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGG-TTMHIDFVIPINGSLTAG----- 156
V GGID H H ALA G TT+ P GS
Sbjct: 129 VTAGGIDTHVHFINP-----------DQVDVALANGITTLFGGGTGPAEGSKATTVTPGP 177
Query: 157 --FEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMIND 214
E K + ++ G E + G K +
Sbjct: 178 WNIEKMLKSTEGLPINVGILGKGHGSSIAPIMEQ----IDAGAAGLKIHEDWG----ATP 229
Query: 215 ELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTR 274
+ +H++ + + + + +EG
Sbjct: 230 ASIDRSLTVADEADVQVAIHSDTLNEAGFLEDTL------RAINGRVIHSFHVEGAGGGH 283
Query: 275 AIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTA 334
A + P + R I E + +V +
Sbjct: 284 APDIMAMAGHPNVLPSS--------TNPTRPFTVNTIDEHLDMLMVCHHL---KQNIPED 332
Query: 335 AKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIE 394
+ S + + + GI+ ++ TD A G R +
Sbjct: 333 VAFADSRIRPETIAAEDI--LHDLGIISMMSTDALAMG----RAGEMVLRTWQTADKMKK 386
Query: 395 ERMHLVWDTMVESGQISVTDYVRLTST 421
+R L + S + YV +
Sbjct: 387 QRGPL-AEEKNGSDNFRLKRYVSKYTI 412
|
| >2ics_A Adenine deaminase; TIM barrel, binuclear zinc, adenine complex, amidohydrolase, structural genomics, PSI, protein structure initiative; HET: KCX ADE; 2.30A {Enterococcus faecalis} SCOP: b.92.1.8 c.1.9.14 Length = 379 | Back alignment and structure |
|---|
Score = 92.5 bits (229), Expect = 9e-21
Identities = 37/265 (13%), Positives = 80/265 (30%), Gaps = 20/265 (7%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
+LIK G VN ++ +++ + AV I+ + G +V G ID H H
Sbjct: 7 LLIKNGQTVNG---MPVEIAIKEKKIAAVAATISGSAKETIHLEPGTYVSAGWIDDHVHC 63
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKN--SCMDYG 172
F D+ + G T ID ++ ++ ++ N ++
Sbjct: 64 ---FEKMALYYDYPD--EIGVKKGVTTVIDAGTTGAENIHEFYDLAQQAKTNVFGLVNIS 118
Query: 173 FHMAITKWDEVVSDEMEVMVKEK-------GINSFKFFMAYKGSFMINDELLIEGFKRCK 225
+ + + +++ + +K + K M+ L + +
Sbjct: 119 KWGIVAQDELADLSKVQASLVKKAIQELPDFVVGIKARMSRTVIGDNGITPLELAKQIQQ 178
Query: 226 SLGALA-MVHAENGDAVFEGQKRMIELG-ITGPEGHALSRPPLLEGEATTR-AIRLAEFV 282
+ MVH + + ++E G + + L + + A
Sbjct: 179 ENQEIPLMVHIGSAPPHLDEILALMEKGDVLTHCFNGKENGILDQATDKIKDFAWQAYNK 238
Query: 283 NTPLYVVHVMSMDAMEEIAKARKAG 307
+ H A + G
Sbjct: 239 GVVFDIGHGTDSFNFHVAETALREG 263
|
| >1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase, metalloprotease; HET: KCX; 1.65A {Escherichia coli} SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A* 1pok_B* 2aqo_A* 1ybq_A* 2aqv_A* Length = 390 | Back alignment and structure |
|---|
Score = 82.5 bits (204), Expect = 2e-17
Identities = 58/382 (15%), Positives = 124/382 (32%), Gaps = 62/382 (16%)
Query: 50 QSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNIN--VGDDVKVLDATGKFVMPGG 107
++ L++G + + I DV V +G ++AV NI + + V+D +G+ + PG
Sbjct: 5 TAAGFTLLQGAHLYAPEDRGICDVLVANGKIIAVASNIPSDIVPNCTVVDLSGQILCPGF 64
Query: 108 IDPHTHLAM-EFMGSETIDDFFSGQAAALAGGTTMHI-----DFVIPINGSLTAGFEAYE 161
ID H HL T + G T + D + SL A A
Sbjct: 65 IDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVGLLGTDSISRHPESLLAKTRALN 124
Query: 162 KKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGF 221
++ ++ M G + ++ ++ ++ S + L
Sbjct: 125 EEGISAWMLTGAYHVPSRTITGSVEKDVAIIDRVIGVKCAISD--HRSAAPDVYHLANMA 182
Query: 222 KRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEF 281
+ G L G+ + + G + + + +
Sbjct: 183 AESRVGGLLG------------GKPGVTVFHM----GDSKK-----ALQPIYDLLENCDV 221
Query: 282 VNTPLYVVHV-MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMS 340
+ L HV ++ E+ + + G + +T++ +
Sbjct: 222 PISKLLPTHVNRNVPLFEQALEFARKGGTI--------------------DITSS---ID 258
Query: 341 PPIRAS-GHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHL 399
P+ + G +A+QA + + L + + + GV G E +
Sbjct: 259 EPVAPAEGIARAVQAGIPLARVTLSSDGNGSQPFFDD-----EGNLTHIGVAGFETLLET 313
Query: 400 VWDTMVESGQISVTDYVRLTST 421
V +V+ S++D +R ++
Sbjct: 314 VQV-LVKDYDFSISDALRPLTS 334
|
| >3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens} PDB: 3t81_A 3t8l_A Length = 608 | Back alignment and structure |
|---|
Score = 80.8 bits (199), Expect = 1e-16
Identities = 37/191 (19%), Positives = 66/191 (34%), Gaps = 17/191 (8%)
Query: 55 ILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
+LI GGT+V+ ++ AD+ + ++ +V + D +V+DA G +V PG ID H
Sbjct: 37 VLITGGTLVDVVTGELRPADIGIVGALIASVHEPASRRDAAQVIDAGGAYVSPGLIDTHM 96
Query: 113 HLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYG 172
H+ S ++ A G TT+ D N G K +N +
Sbjct: 97 HI----ESSMITPAAYA-AAVVARGVTTIVWDPHEFGNVHGVDGVRWAAKAIENLPLRAI 151
Query: 173 F---------HMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKR 223
+ + + ++ I M +G D + +
Sbjct: 152 LLAPSCVPSAPGLERGGADFDAAILADLLSWPEIGGIAEIMNMRGVIE-RDPRMSGIVQA 210
Query: 224 CKSLGALAMVH 234
+ L H
Sbjct: 211 GLAAEKLVCGH 221
|
| >2vun_A Enamidase; nicotinate degradation, binuclear metal center, amidohydrolases, stereospecificity, hydrolase; 1.89A {Eubacterium barkeri} Length = 386 | Back alignment and structure |
|---|
Score = 79.6 bits (196), Expect = 2e-16
Identities = 57/323 (17%), Positives = 102/323 (31%), Gaps = 34/323 (10%)
Query: 53 SKILIK-GGTVVNAHHQ----QIADVYVEDGIVVAVQP--NINVGDDVKVLDATGKFVMP 105
SK +IK G +V+ + Q + VEDG++ A+ + D ++DA G V P
Sbjct: 2 SKTIIKNIGKIVSGDIKSPVLQADTIVVEDGLIAAIGGEELMKDAGDATIIDAAGSTVTP 61
Query: 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYE---- 161
G +D H H+ ++AL GG T I P +
Sbjct: 62 GLLDTHVHV--SGGDYAPRQKTMDFISSALHGGVTTMISAGSPHFPGRPKDAAGTKALAI 119
Query: 162 --KKAKNSCMDYGFHM---AITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDEL 216
K+ + G + A+ + ++ M KE G+ G+ N E
Sbjct: 120 TLSKSYYNARPAGVKVHGGAVILEKGLTEEDFIEMKKE-GVWIVGEVG--LGTIK-NPED 175
Query: 217 LIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAI 276
+ G +H G ++ + I +
Sbjct: 176 AAPMVEWAHKHGFKVQMHTG-GTSIPGSSTVTADDVIKTKPDVVSHINGGPTAISVQEVD 234
Query: 277 RLAEFVNTPLYVVHVMSMDAMEEI---AKARKAGQRVI-GEPVVSGLVLDDSWLWHSDFV 332
R+ + + + +V + + + A + RVI G SG L + +
Sbjct: 235 RIMDETDFAMEIVQCGNPKIADYVARRAAEKGQLGRVIFGNDAPSGTGLIPLGILRNMCQ 294
Query: 333 TAAKYVMSPPIRASGHNKALQAA 355
A+ + P A+ A
Sbjct: 295 IASMSDIDPE-------VAVCMA 310
|
| >3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, H PSI-2; 2.06A {Thermotoga maritima} Length = 396 | Back alignment and structure |
|---|
Score = 78.9 bits (194), Expect = 3e-16
Identities = 56/278 (20%), Positives = 96/278 (34%), Gaps = 42/278 (15%)
Query: 52 SSKILIKGGTVVNAHHQQI-ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
S KIL K TV + DV V +G V V NI D +++D TGKF+ PG +D
Sbjct: 4 SVKILFKNATVFPITSRPFKGDVLVSNGKVEKVGENIED-PDAEIVDLTGKFLFPGFVDA 62
Query: 111 HTHLAM--EFMGSETIDDFFSGQAA-------------------ALAGGTTMHIDFVIPI 149
H+H+ + E +G D + ALAGG T ++P
Sbjct: 63 HSHIGLFEEGVGYYYSDGNEATDPVTPHVKALDGFNPQDPAIERALAGGVTSV--MIVPG 120
Query: 150 NGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGS 209
+ + G + +E + + + G N + + K +
Sbjct: 121 SANPVGGQGSV------------IKFRSIIVEECIVKDPAGLKMAFGENPKRVYGERKQT 168
Query: 210 F---MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPL 266
M ++ + F + K+ + + G E +M +R
Sbjct: 169 PSTRMGTAGVIRDYFTKVKNYMKKKELAQKEGKEFTETDLKMEVG-EMVLRKKIPARMHA 227
Query: 267 LEGEATTRAIRLAEFVNTPLYVVHVM-SMDAMEEIAKA 303
+ AIR+AE L + H + + +A+
Sbjct: 228 HRADDILTAIRIAEEFGFNLVIEHGTEAYKISKVLAEK 265
|
| >2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex, amido hydrola 9244B, structural genomics, PSI-2; HET: KCX; 2.62A {Agrobacterium tumefaciens} Length = 417 | Back alignment and structure |
|---|
Score = 75.9 bits (186), Expect = 3e-15
Identities = 55/348 (15%), Positives = 103/348 (29%), Gaps = 58/348 (16%)
Query: 44 GPQCGIQSSSKILIKGGTVV---NAHHQQIADVYVE-DGIVVAVQPNINVGDDVKVLDAT 99
G Q + IL+ V Q D+ + DG + AV + D + +DA
Sbjct: 6 GEQAKTPLQAPILLTNVKPVGFGKGASQSSTDILIGGDGKIAAVGSALQAPADTQRIDAK 65
Query: 100 GKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEA 159
G F+ PG +D H H+ +I G T +D
Sbjct: 66 GAFISPGWVDLHVHI-WHGGTDISIR----PSECGAERGVTTLVDAGSA----------- 109
Query: 160 YEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIE 219
++ + + + G+ + + I+ + ++E
Sbjct: 110 -------GEANFHGFREYIIEPSRERIKAFLNLGSIGLVACNRVPELRDIKDIDLDRILE 162
Query: 220 GFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLA 279
+ G K ITG G ++A
Sbjct: 163 CYAE--------------NSEHIVGLKVRASHVITGSWGV----------TPVKLGKKIA 198
Query: 280 EFVNTPLYVVHVMSMDA-MEEIAKARKAGQRV--IGEPVVSGLVLDDSWLWHS--DFVTA 334
+ + P+ +VHV A +E+ + G V +++D L++
Sbjct: 199 KILKVPM-MVHVGEPPALYDEVLEILGPGDVVTHCFNGKSGSSIMEDEDLFNLAERCAGE 257
Query: 335 AKYVMSPPIRASGHNKALQAALATGILQL-VGTDHCAFNSTQKAFGID 381
+ AS K +AA+A G+L + TD + + +
Sbjct: 258 GIRLDIGHGGASFSFKVAEAAIARGLLPFSISTDLHGHSMNFPVWDLA 305
|
| >2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.31A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3mkv_A* Length = 426 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 4e-13
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 51 SSSKILIKGGTVVNAHHQQI---ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGG 107
S + L + G +++ H + ++ +EDG + V + V+D GK +MPG
Sbjct: 2 SLTTFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKSSNAHVIDVKGKTIMPGL 61
Query: 108 IDPHTHLAMEFMGSETIDDFFSGQAAALA 136
ID H H+ + + A
Sbjct: 62 IDLHVHVVAIEFNLPRVATLPNVLVTLRA 90
|
| >2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18 Length = 418 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 1e-12
Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 12/110 (10%)
Query: 52 SSKILIKGGTVVNAHHQQI---ADVYVEDGIVVAVQPN-INVGDDVKVLDATGKFVMPGG 107
SK LI G +++ Q+ + ++ I+ ++ I+ D +D V+PG
Sbjct: 6 DSKTLIHAGKLIDGKSDQVQSRISIVIDGNIISDIKKGFISSNDFEDYIDLRDHTVLPGL 65
Query: 108 IDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGF 157
+D H H E+ + A+ ++ + +GF
Sbjct: 66 MDMHVHFGQEYQSKAQAPIKVEREMQAILATQHAYV--------TFKSGF 107
|
| >3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.63A {Unidentified} PDB: 3lwy_A* 3n2c_A* Length = 423 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 3e-12
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 51 SSSKILIKGGTVVNAHHQQI---ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGG 107
S + +++GG V++ + V ++ +V V + + +D GK VMPG
Sbjct: 2 SLTITVLQGGNVLDLERGVLLEHHHVVIDGERIVEVTDRPVDLPNAQAIDVRGKTVMPGF 61
Query: 108 IDPHTHLAME 117
ID H H+
Sbjct: 62 IDCHVHVLAS 71
|
| >2qt3_A N-isopropylammelide isopropyl amidohydrolase; N-isopropylammelide isopropylaminohydrolase ATZC, structural genomics, NYSGXRC, target 9364B; 2.24A {Pseudomonas SP} Length = 403 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 5e-12
Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
++I+ + + + D+ + ++ ++ I G +DA G V PG +D HTH+
Sbjct: 7 LIIRNAYL--SEKDSVYDIGIVGDRIIKIEAKIE-GTVKDEIDAKGNLVSPGFVDAHTHM 63
Query: 115 AMEFMGSETIDDFFSGQAAALAGG 138
F + F +
Sbjct: 64 DKSFTSTGERLPKFWSRPYTRDAA 87
|
| >3ls9_A Triazine hydrolase; atrazine chlorohydrolase TRZN; 1.40A {Arthrobacter aurescens} PDB: 3lsc_A* 3lsb_A* Length = 456 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 2e-11
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 55 ILIKGGTVV---NAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGID 109
ILI+G T V + +++ AD+ ++ +VAV +++ + +D G +PG I+
Sbjct: 2 ILIRGLTRVITFDDQERELEDADILIDGPKIVAVGKDLSDRSVSRTIDGRGMIALPGLIN 61
Query: 110 PHTHLAMEFM-GSETIDD 126
H HL M ++
Sbjct: 62 SHQHLYEGAMRAIPQLER 79
|
| >1ejx_C Urease alpha subunit; alpha-beta barrel, nickel metalloenzyme, temperature depende structural changes, hydrolase; HET: KCX; 1.60A {Klebsiella aerogenes} SCOP: b.92.1.1 c.1.9.2 PDB: 1ejw_C* 1fwj_C* 1kra_C 2kau_C* 1ef2_A* 1ejv_C* 1ejt_C* 1eju_C* 1ejs_C* 1ejr_C* 1krc_C 1krb_C* 1fwi_C* 1fwa_C* 1fwb_C* 1fwc_C* 1fwd_C* 1fwe_C* 1fwg_C* 1a5k_C ... Length = 567 | Back alignment and structure |
|---|
Score = 63.9 bits (155), Expect = 3e-11
Identities = 40/288 (13%), Positives = 78/288 (27%), Gaps = 27/288 (9%)
Query: 46 QCGIQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNIN----------VGDDVKV 95
Q +++ +V+ AD+ V+DG + A+ N +G +V
Sbjct: 59 QMLAADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEV 118
Query: 96 LDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTA 155
+ A GK V GGID H H E SG + GGT
Sbjct: 119 IAAEGKIVTAGGIDTHIHWICPQQAEE---ALVSGVTTMVGGGTGPAAGTHATTCTPGPW 175
Query: 156 GFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDE 215
+ A + ++ G E G+ K + + D
Sbjct: 176 YISRMLQAADSLPVNIGLLGKGNVSQPDALREQV----AAGVIGLKIHEDWGATPAAID- 230
Query: 216 LLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRA 275
+ +H++ + + + + G EG A
Sbjct: 231 ---CALTVADEMDIQVALHSDTLNESGFVEDTLAAI------GGRTIHTFHTEGAGGGHA 281
Query: 276 IRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDD 323
+ P + + + + ++ + + +D
Sbjct: 282 PDIITACAHPNILPSSTNPTLPYTLNTIDEHLDMLMVCHHLDPDIAED 329
|
| >3be7_A Zn-dependent arginine carboxypeptidase; unknown source, amidohydrolase, sargasso SEA, structural GEN protein structure initiative, PSI; HET: ARG; 2.30A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A* Length = 408 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 5e-11
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 51 SSSKILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGI 108
+S LIK ++ +I AD+ + +G + + D V+ ++PG +
Sbjct: 4 TSEDFLIKSKGYLDIQTGEIIKADLLIRNGKIAEIGKI--NTKDATVISIPDLILIPGLM 61
Query: 109 DPHTHLAME 117
D H H+
Sbjct: 62 DSHVHIVGN 70
|
| >1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer, conformation change, D314G mutant, hydrolase; 1.12A {Escherichia coli} SCOP: b.92.1.2 c.1.9.5 PDB: 1r9x_A 1ra5_A 1r9y_A 1r9z_A 1rak_A 3r0d_A* 3o7u_A* 3rn6_A* 1k6w_A 1k70_A 3g77_A Length = 430 | Back alignment and structure |
|---|
Score = 63.1 bits (153), Expect = 6e-11
Identities = 46/311 (14%), Positives = 90/311 (28%), Gaps = 51/311 (16%)
Query: 49 IQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV-GDDVKVLDATGKFVMPGG 107
+ +++ I + + + ++++DG + A+ V LDA V+P
Sbjct: 4 MANNALQTIINARL--PGEEGLWQIHLQDGKISAIDAQSGVMPITENSLDAEQGLVIPPF 61
Query: 108 IDPHTHLAMEFMGSE-----------------------TIDDFFSGQAAAL----AGGTT 140
++PH HL + T DD L A G
Sbjct: 62 VEPHIHLDTTQTAGQPNWNQSGTLFEGIERWAERKALLTHDDVKQRAWQTLKWQIANGIQ 121
Query: 141 M---HIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGI 197
H+D +L A E ++ A + + + G
Sbjct: 122 HVRTHVDVSDATLTALKAMLEVKQEVAPWIDLQIVAFPQEGILSYPNGEALLEEALRLGA 181
Query: 198 NSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIEL----- 251
+ ++ + E L + F + L VH E D + + L
Sbjct: 182 DVVGAIPHFEFTREYGVESLHKTFALAQKYDRLIDVHCDEIDDEQSRFVETVAALAHHEG 241
Query: 252 ---GITGPEGHALSRPPLLEGEATTRAIRLAE--FVNTPLYVVHVMSMDAMEE------- 299
+T A+ R ++++ FV PL +H+
Sbjct: 242 MGARVTASHTTAMHSYNGAYTSRLFRLLKMSGINFVANPLVNIHLQGRFDTYPKRRGITR 301
Query: 300 IAKARKAGQRV 310
+ + ++G V
Sbjct: 302 VKEMLESGINV 312
|
| >1p1m_A Hypothetical protein TM0936; putative metal dependent hydrolase, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: b.92.1.4 c.1.9.9 PDB: 2plm_A* 1j6p_A Length = 406 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 2e-10
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 55 ILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
++I ++ + V +E+G + V G+ LD +GK VMP + HT
Sbjct: 1 MIIGNCLILKDFSSEPFWGAVEIENGTIKRVLQ----GEVKVDLDLSGKLVMPALFNTHT 56
Query: 113 HLAMEFM 119
H M +
Sbjct: 57 HAPMTLL 63
|
| >2paj_A Putative cytosine/guanine deaminase; NYSGXRC, PSI-II, amidohydrolase, sargasso SEA, enviro sample, structural genomics; 2.70A {Unidentified} SCOP: b.92.1.4 c.1.9.9 Length = 492 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 3e-10
Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 11/86 (12%)
Query: 51 SSSKILIKGGTVVNAHHQQI---------ADVYVEDGIVVAVQPNINVGDDVKVLDATGK 101
+ LI+ + + D+ + + A+ + ++DAT
Sbjct: 8 TQPSTLIRNAAAIMTGGRGTADDPSRVPGPDIRIVGDTIDAIGALAPRPGE-TIVDATDC 66
Query: 102 FVMPGGIDPHTHLAMEFM-GSETIDD 126
+ P ++ H HL + G D
Sbjct: 67 VIYPAWVNTHHHLFQSLLKGEPAGLD 92
|
| >4f0r_A 5-methylthioadenosine/S-adenosylhomocysteine DEAM; structural genomics, PSI-biology; HET: MSE MTA; 1.80A {Chromobacterium violaceum} PDB: 4f0s_A* Length = 447 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 4e-10
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 50 QSSSKILIKGGTVV--NAHHQQIAD--VYVEDGIVVAVQPNINVG--DDVKVLDATGKFV 103
QS + +I ++ + + + + + DG + A+ P + + + L+ +
Sbjct: 3 QSRYEKIISARWIITVETDGEVLENHAIAIRDGKIAAIIPAADAAGLEADERLELPDHVL 62
Query: 104 MPGGIDPHTHLAMEFM 119
MPG I+ H H AM +
Sbjct: 63 MPGLINLHGHSAMSLL 78
|
| >4dyk_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO PSI-biology, NEW YORK structural genomics research consorti hydrolase; 2.00A {Pseudomonas aeruginosa} Length = 451 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 4e-10
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 6/68 (8%)
Query: 55 ILIKGGTVV--NAHHQQI--ADVYVEDGIVVAVQPNINVG--DDVKVLDATGKFVMPGGI 108
+L+ +V + + + DG + V P ++ + G + PG +
Sbjct: 10 LLLLPTWIVPVEPAGVVLRDHALGIRDGQIALVAPREQAMRHGATEIRELPGMLLAPGLV 69
Query: 109 DPHTHLAM 116
+ H H AM
Sbjct: 70 NAHGHSAM 77
|
| >4dzh_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO YORK structural genomics research consortium; 1.55A {Xanthomonas campestris PV} Length = 472 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 5e-10
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 55 ILIKGGTVV--NAHHQQIAD--VYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGG 107
+LI+ G VV H + D V V +G++VAV P + + + +MPG
Sbjct: 16 LLIEAGYVVPIEPHAVVLEDHAVAVSNGVIVAVLPTADARVRFAPARTVSRPDAALMPGL 75
Query: 108 IDPHTHLAMEFM 119
++ HTH M +
Sbjct: 76 VNAHTHNPMTLL 87
|
| >3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase; 1.50A {Bordetella bronchiseptica} PDB: 3giq_A* Length = 480 | Back alignment and structure |
|---|
Score = 58.8 bits (142), Expect = 1e-09
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 55 ILIKGGTVVN--AHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
I GG +++ ++ AD+ V DG + A+ DA+GK V PG ID H
Sbjct: 9 FKITGGWIIDGTGAPRRRADLGVRDGRIAAIGELGAHPAR-HAWDASGKIVAPGFIDVHG 67
Query: 113 H 113
H
Sbjct: 68 H 68
|
| >3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel, beta-fold, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Oleispira antarctica} Length = 468 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 2e-09
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 31 SNNLFCDAGSEYGGPQCGIQSSSKILIKGGTVV--------NAHHQQIAD--VYVEDGIV 80
SN + D+ S Q ++ + + I ++ N + D + ++DGI+
Sbjct: 1 SNAMSKDSESNLAQRQSQPKAHADLRINSHWIIPIENTTDHNLVSNILIDHCLLIKDGII 60
Query: 81 VAVQPNINV-GDDVKVLDATGKFVMPGGIDPHTHLAM 116
+A++P + + LD + +MPG ++ H H AM
Sbjct: 61 LAIEPQSSCQIPATETLDLGQQVLMPGWVNAHGHAAM 97
|
| >1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase; 1.43A {Alcaligenes faecalis} SCOP: b.92.1.6 b.92.1.6 c.1.9.11 PDB: 1rjp_A 1v51_A 1rjq_A 1rjr_A 1rk5_A 1v4y_A 1m7j_A Length = 496 | Back alignment and structure |
|---|
Score = 57.7 bits (139), Expect = 3e-09
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 55 ILIKGGTVVN--AHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
++ GGTV++ ++ADV V + AV ++ D GK V PG ID HT
Sbjct: 23 YILSGGTVIDGTNAPGRLADVGVRGDRIAAVGDLSASSARRRI-DVAGKVVSPGFIDSHT 81
Query: 113 H 113
H
Sbjct: 82 H 82
|
| >2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate, product-bound, structural genomics, protein STRU initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens str} SCOP: b.92.1.10 c.1.9.17 PDB: 2gok_A Length = 419 | Back alignment and structure |
|---|
Score = 56.5 bits (136), Expect = 6e-09
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 11/77 (14%)
Query: 51 SSSKILIKGGTVV--NAHHQQI-----ADVYVEDGIVVAVQPNINV----GDDVKVLDAT 99
++ L + + N I A + V +G + P ++ + D
Sbjct: 13 GNATALWRNAQLATLNPAMDGIGAVENAVIAVRNGRIAFAGPESDLPDDLSTADETTDCG 72
Query: 100 GKFVMPGGIDPHTHLAM 116
G+++ P ID HTHL
Sbjct: 73 GRWITPALIDCHTHLVF 89
|
| >3iv8_A N-acetylglucosamine-6-phosphate deacetylase; IDP01334, fruct phosphate, carbohydrate metabolism, hydrolase; HET: F6P; 2.53A {Vibrio cholerae} PDB: 3egj_A* Length = 381 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 6e-09
Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Query: 51 SSSKILIKGGTVVNAHHQQI-ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGID 109
S++ + + + + V + + AV P ++ ++ V+D G + PG ID
Sbjct: 1 SNAMYALTNCKIYTGNDVLVKHAVIINGDKIEAVCPIESLPSEMNVVDLNGANLSPGFID 60
Query: 110 PHTHLAM--EFMGSETIDDFFSGQAAALAGGTT 140
+ F T + + A L G T
Sbjct: 61 LQLNGCGGVMFNDEITAETIDTMHKANLKSGCT 93
|
| >2p9b_A Possible prolidase; protein structure initiative II, PSI-2, amidohydrolase, structural genomics; 1.70A {Bifidobacterium longum NCC2705} SCOP: b.92.1.10 c.1.9.17 Length = 458 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 8e-09
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 52 SSKILIKGGTVVNAH-----HQQIADVYVEDGIVVAVQPN--INVGDDVKVLDATGKFVM 104
+ T+V + + V DG + V P+ ++ + LD TGK VM
Sbjct: 11 VEPFALAHATIVTGDKAGTILRNMTIVVGADGRIEQVAPSIETSIPAEYHYLDGTGKIVM 70
Query: 105 PGGIDPHTHLAME 117
PG I+ HTHL +
Sbjct: 71 PGLINAHTHLFSQ 83
|
| >2bb0_A Imidazolonepropionase; TIM barrel, hydrolase; 2.00A {Bacillus subtilis} SCOP: b.92.1.10 c.1.9.17 PDB: 2g3f_A Length = 421 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 1e-08
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 71 ADVYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPHTHLAM 116
A V + + +V + +++D +G+ V PG +DPHTHL
Sbjct: 38 AVVGIHEQKIVFAGQKGAEAGYEADEIIDCSGRLVTPGLVDPHTHLVF 85
|
| >2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo 4YL)-propionic acid, PSI-2 community, structural genomics, structure initiative; HET: DI6; 1.97A {Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A* Length = 416 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 2e-08
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 9/74 (12%)
Query: 52 SSKILIKGGTVV-----NAHHQQI--ADVYVEDGIVVAVQP--NINVGDDVKVLDATGKF 102
+ + + T A + + + V +G + A+ P ++ D GK
Sbjct: 4 NCERVWLNVTPATLRSDLADYGLLEPHALGVHEGRIHALVPMQDLKGPYPAHWQDMKGKL 63
Query: 103 VMPGGIDPHTHLAM 116
V PG ID HTHL
Sbjct: 64 VTPGLIDCHTHLIF 77
|
| >1yrr_A N-acetylglucosamine-6-phosphate deacetylase; (beta/alpha)8 barrel, beta sandwich, hydrolase; 2.00A {Escherichia coli} SCOP: b.92.1.5 c.1.9.10 PDB: 1ymy_A 2p50_A 2p53_A* Length = 382 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 3e-08
Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 6/90 (6%)
Query: 57 IKGGTVVNAHH-QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH-- 113
+ G + H V + DG++ +V P + +++ G + PG ID +
Sbjct: 4 LTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELPPEIEQRSLNGAILSPGFIDVQLNGC 63
Query: 114 ---LAMEFMGSETIDDFFSGQAAALAGGTT 140
+ + +++ Q A G T
Sbjct: 64 GGVQFNDTAEAVSVETLEIMQKANEKSGCT 93
|
| >2i9u_A Cytosine/guanine deaminase related protein; protein structure initiative II (PSI-II), amidohydrol guanine deaminase; HET: GUN; 2.05A {Clostridium acetobutylicum} SCOP: b.92.1.4 c.1.9.9 Length = 439 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 1e-07
Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 49 IQSSSKILIKGGTVVNAHHQQI-----ADVYVEDGIVVAVQPNINVG-DDVKVLDATGKF 102
+ + + KG + + + + V DG + +V N+ ++D
Sbjct: 5 EKDINLKIFKGNLIFTKTSDKFTIMKDSYIVVIDGKIASVSSNLPDKYKGNPIIDFRNNI 64
Query: 103 VMPGGIDPHTHLAM 116
++PG D H H +
Sbjct: 65 IIPGMNDLHAHASQ 78
|
| >2vhl_A N-acetylglucosamine-6-phosphate deacetylase; N- acetyleglucosamine-6-phosphate, carbohydrate metabolism, hydrolase; HET: GLP PGE; 2.05A {Bacillus subtilis} Length = 396 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-07
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%)
Query: 52 SSKILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQP-NINVGDDVKVLDATGKFVMPGGID 109
+ +LIK +V + + V + DG + V ++ ++PG ID
Sbjct: 2 AESLLIKDIAIVTENEVIKNGYVGINDGKISTVSTERPKEPYSKEIQAPADSVLLPGMID 61
Query: 110 PHTHLAMEFMGSETIDDFFSGQAAALAG-GTT 140
H H + ++ L GTT
Sbjct: 62 IHIHGGYGADTMDASFSTLDIMSSRLPEEGTT 93
|
| >2imr_A Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, structural genomics, protein structure initiative; 1.78A {Deinococcus radiodurans} SCOP: b.92.1.11 c.1.9.16 Length = 420 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 3e-07
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 4/65 (6%)
Query: 56 LIKGGTVVNAHHQQIAD--VYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPH 111
L+ + + V V V A + + G + P ++ H
Sbjct: 40 LLTCDVLYTGMGGAQSPGGVVVVGETVAAAGHPDELRRQYPHAAEERAGAVIAPPPVNAH 99
Query: 112 THLAM 116
THL M
Sbjct: 100 THLDM 104
|
| >3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group., structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus thuringiensis serovarkonkukian} Length = 81 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 3e-07
Identities = 13/65 (20%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 55 ILIKGGTV--VNAHHQQIADVYVEDGIVVAV---QPNINVGDDVKVLDATGKFVMPGGID 109
+++ G + ++ +++ + + DG++ AV + + + K +D K +PG D
Sbjct: 6 MILYNGKITTLDPSQPEVSAIAITDGLITAVGGDELLNSATEKTKKIDLKRKRAIPGLND 65
Query: 110 PHTHL 114
H H+
Sbjct: 66 SHIHV 70
|
| >3icj_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structur initiative; HET: KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X* Length = 534 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-07
Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 14/111 (12%)
Query: 13 LTSVALLLLLLYFPPISESNNLFCDAGSEYGGPQCGIQSSSKILIKGGTV--VNAHHQQI 70
L S+ + + + + G + GT+ + +++
Sbjct: 3 LASLPISNFFTFNHQSTLFTKVKNFMG-------VKHIGDCMKALINGTIYTSFSPVKKV 55
Query: 71 ADVYVEDGIVVAV-----QPNINVGDDVKVLDATGKFVMPGGIDPHTHLAM 116
+ + + + V+ I +++D GKFVMP D H HL
Sbjct: 56 SGLVISNERVLYAGDSSTALRIAELAGGEIIDLKGKFVMPAFFDSHLHLDE 106
|
| >3v7p_A Amidohydrolase family protein; iron binding site, enzyme functio initiative, EFI; HET: TLA; 1.35A {Nitratiruptor SP} Length = 427 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 5e-07
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 55 ILIKGGTVVNAHHQQIADVYV-EDGIVVAVQPNINVGD---DVKVLDATGKFVMPGGIDP 110
+IK ++ I D V D + A+ N+ + V ++PG +P
Sbjct: 2 RIIKPFAILTPQ-TIIQDKAVAFDKKIEAIDTVENLIKKYPNAAVEHDENSLLLPGFANP 60
Query: 111 HTHLAM 116
H HL
Sbjct: 61 HLHLEF 66
|
| >2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine, structural genomics, protein structure initiative; HET: GUN; 2.62A {Bradyrhizobium japonicum} SCOP: b.92.1.4 c.1.9.9 Length = 475 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 71 ADVYVEDGIVVAVQPNINVGD---DVKVLDATGKFVMPGGIDPHTHLAM 116
+ V DG++ A P + V++ + ++PG ID H HL
Sbjct: 36 GLMVVTDGVIKAFGPYEKIAAAHPGVEITHIKDRIIVPGFIDGHIHLPQ 84
|
| >4f0l_A Amidohydrolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Brucella melitensis biovar abortus} Length = 458 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 7e-06
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 71 ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119
+ + G++ +++ + G D D V+ G + H+H M
Sbjct: 29 VRIGIAGGVICSIETGVLAGPD----DERQSVVVAGMANLHSHAFQYGM 73
|
| >1o12_A N-acetylglucosamine-6-phosphate deacetylase; structural genomics, TM0814, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} SCOP: b.92.1.5 c.1.9.10 Length = 376 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 5e-05
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 14/93 (15%)
Query: 50 QSSSKILIKGGTVVNAHHQQI-ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGI 108
++++ +V+ + DV +E+G +V V+ +MPG +
Sbjct: 8 HHHHHMIVEKVLIVDPIDGEFTGDVEIEEGKIVKVEKRE---------CIPRGVLMPGFV 58
Query: 109 DPHTHLAMEFMGSETIDDFFSGQAAALAG-GTT 140
DPH H +G++T++ FS L G T
Sbjct: 59 DPHIHGV---VGADTMNCDFSEMEEFLYSQGVT 88
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 7e-05
Identities = 51/352 (14%), Positives = 101/352 (28%), Gaps = 109/352 (30%)
Query: 83 VQPNINVGDDVKVLDATGKFVMPG-GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTM 141
++P NV ++D G + G G T +A++ S + + L
Sbjct: 147 LRPAKNV-----LID--G---VLGSG---KTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 142 HIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFK 201
+ V+ + L + N I + E+ ++K K
Sbjct: 194 SPETVLEMLQKL------LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP----- 242
Query: 202 FFMAYKGSFMINDEL----LIEGFK-RCKSLGALAMVHAENGDAVFEGQKRMIELGITGP 256
Y+ ++ + F CK L L + D + I L
Sbjct: 243 ----YENCLLVLLNVQNAKAWNAFNLSCKIL--LTTRFKQVTDFLSAATTTHISLD---- 292
Query: 257 EGHALSRPPLLEGEATTRAIRLAEFVNT-------------PLYVVHVMSMDAMEEIAKA 303
L E +++ L ++++ P +S+
Sbjct: 293 ----HHSMTLTPDE--VKSL-LLKYLDCRPQDLPREVLTTNPR----RLSI--------- 332
Query: 304 RKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQL 363
I E + GL D+W K+V L + + + L
Sbjct: 333 -------IAESIRDGLATWDNW----------KHVN---------CDKLTTIIESSLNVL 366
Query: 364 VGTDHCAFNSTQKAFGIDDFRKIPNGVNGI-EERMHLVWDTMVESGQISVTD 414
++ +K F D P + I + L+W +++S + V +
Sbjct: 367 EPAEY------RKMF--DRLSVFPPSAH-IPTILLSLIWFDVIKSDVMVVVN 409
|
| >3mdu_A N-formimino-L-glutamate iminohydrolase; amonohydralase family, N-formimino-L-glutamate iminohydrolas guanidino-L-glutamate; HET: NGQ; 1.40A {Pseudomonas aeruginosa} PDB: 3mdw_A* Length = 453 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 9/64 (14%)
Query: 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLA 115
L+ G N DG++ ++P + + G V+PG + H+H
Sbjct: 10 LLPEGWARNV-----RFEISADGVLAEIRP----DANADGAERLGGAVLPGMPNLHSHAF 60
Query: 116 MEFM 119
M
Sbjct: 61 QRAM 64
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 427 | |||
| 3dc8_A | 490 | Dihydropyrimidinase; TIM-barrel, hydrolase; HET: K | 100.0 | |
| 3sfw_A | 461 | Dihydropyrimidinase; hydrolase, zinc binding; HET: | 100.0 | |
| 3e74_A | 473 | Allantoinase; (beta/alpha)8-barrel domain, small b | 100.0 | |
| 2fty_A | 559 | Dihydropyrimidinase; alpha/beta barrel, beta-sandw | 100.0 | |
| 2ftw_A | 521 | Dihydropyrimidine amidohydrolase; (beta-alpha)8-ba | 100.0 | |
| 3hm7_A | 448 | Allantoinase; metallo-dependent hydrolase, protein | 100.0 | |
| 2vr2_A | 541 | Dihydropyrimidinase; hydantoinase, metal-binding, | 100.0 | |
| 1gkp_A | 458 | Hydantoinase; hydrolase, dihydropyrimidinase, cycl | 100.0 | |
| 3gri_A | 424 | Dihydroorotase, dhoase; hydrolase, IDP00795, metal | 100.0 | |
| 2vm8_A | 501 | Dihydropyrimidinase-related protein 2; neurogenesi | 100.0 | |
| 3mpg_A | 428 | Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus | 100.0 | |
| 1nfg_A | 457 | D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2 | 100.0 | |
| 1gkr_A | 458 | Hydantoinase, non-ATP dependent L-selective hydant | 100.0 | |
| 2z00_A | 426 | Dihydroorotase; zinc binding protein, hydrolase, m | 100.0 | |
| 2gwn_A | 452 | Dihydroorotase; zinc-binding prote structural geno | 100.0 | |
| 3pnu_A | 359 | Dihydroorotase; TIM barrel, zinc binding, hydrolas | 100.0 | |
| 1xrt_A | 467 | Dihydroorotase, dhoase; amidohydrolase, metalloenz | 100.0 | |
| 2z26_A | 347 | Dihydroorotase, dhoase; TIM barrel, hydrolase; HET | 100.0 | |
| 3gip_A | 480 | N-acyl-D-glutamate deacylase; amidohydrolase famil | 100.0 | |
| 4f0r_A | 447 | 5-methylthioadenosine/S-adenosylhomocysteine DEAM; | 99.97 | |
| 1rk6_A | 496 | D-aminoacylase; TIM barrel, beta barrel, insertion | 99.97 | |
| 3lnp_A | 468 | Amidohydrolase family protein OLEI01672_1_465; TIM | 99.97 | |
| 3h4u_A | 479 | Amidohydrolase; signature of Zn ligands, structura | 99.97 | |
| 4dyk_A | 451 | Amidohydrolase; adenosine deaminase, nysgrc, struc | 99.97 | |
| 2paj_A | 492 | Putative cytosine/guanine deaminase; NYSGXRC, PSI- | 99.97 | |
| 3gnh_A | 403 | L-lysine, L-arginine carboxypeptidase CC2672; N-me | 99.96 | |
| 4dzh_A | 472 | Amidohydrolase; adenosine deaminase, nysgrc, struc | 99.96 | |
| 3ls9_A | 456 | Triazine hydrolase; atrazine chlorohydrolase TRZN; | 99.96 | |
| 2i9u_A | 439 | Cytosine/guanine deaminase related protein; protei | 99.96 | |
| 2r8c_A | 426 | Putative amidohydrolase; unknown source, sargasso | 99.96 | |
| 3feq_A | 423 | Putative amidohydrolase; unknown source, sargasso | 99.96 | |
| 1e9y_B | 569 | Urease subunit beta; hydrolase, dodecamer; HET: KC | 99.96 | |
| 2ood_A | 475 | BLR3880 protein; PSI-II, PSI-2, guanine deaminase, | 99.96 | |
| 3be7_A | 408 | Zn-dependent arginine carboxypeptidase; unknown so | 99.96 | |
| 1ra0_A | 430 | Cytosine deaminase; alpha-beta barrel, hexamer, co | 99.95 | |
| 2p9b_A | 458 | Possible prolidase; protein structure initiative I | 99.95 | |
| 2imr_A | 420 | Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, | 99.95 | |
| 2qt3_A | 403 | N-isopropylammelide isopropyl amidohydrolase; N-is | 99.95 | |
| 4aql_A | 476 | Guanine deaminase; hydrolase, purine metabolism; H | 99.95 | |
| 1p1m_A | 406 | Hypothetical protein TM0936; putative metal depend | 99.95 | |
| 2qs8_A | 418 | XAA-Pro dipeptidase; amidohydrolase, TIM barrel, p | 99.95 | |
| 2ics_A | 379 | Adenine deaminase; TIM barrel, binuclear zinc, ade | 99.95 | |
| 2vun_A | 386 | Enamidase; nicotinate degradation, binuclear metal | 99.94 | |
| 2ogj_A | 417 | Dihydroorotase; TIM barrel, binuclear zinc, imidaz | 99.94 | |
| 3v7p_A | 427 | Amidohydrolase family protein; iron binding site, | 99.94 | |
| 1onw_A | 390 | Isoaspartyl dipeptidase; amidohydrolase, hydrolase | 99.94 | |
| 2q09_A | 416 | Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dio | 99.93 | |
| 2puz_A | 419 | Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino | 99.93 | |
| 2vhl_A | 396 | N-acetylglucosamine-6-phosphate deacetylase; N- ac | 99.93 | |
| 4f0l_A | 458 | Amidohydrolase; ssgcid, structural genomics, seatt | 99.92 | |
| 2bb0_A | 421 | Imidazolonepropionase; TIM barrel, hydrolase; 2.00 | 99.92 | |
| 3nqb_A | 608 | Adenine deaminase 2; PSI-II, structural genomics, | 99.92 | |
| 3mdu_A | 453 | N-formimino-L-glutamate iminohydrolase; amonohydra | 99.92 | |
| 4gy7_A | 840 | Urease; JACK bean, hydrolase, ME binding, nickel; | 99.92 | |
| 3icj_A | 534 | Uncharacterized metal-dependent hydrolase; structu | 99.92 | |
| 4ac7_C | 570 | Urease subunit alpha; hydrolase, bacillus pasteuri | 99.91 | |
| 4ubp_C | 570 | Protein (urease (chain C)); bacillus pasteurii, ni | 99.91 | |
| 3hpa_A | 479 | Amidohydrolase; signature of Zn ligands, structura | 99.91 | |
| 4ep8_C | 566 | Urease subunit alpha; alpha-beta barrel, nickel me | 99.89 | |
| 3ooq_A | 396 | Amidohydrolase; structural genomics, protein struc | 99.89 | |
| 1yrr_A | 382 | N-acetylglucosamine-6-phosphate deacetylase; (beta | 99.86 | |
| 3iv8_A | 381 | N-acetylglucosamine-6-phosphate deacetylase; IDP01 | 99.83 | |
| 3mtw_A | 403 | L-arginine carboxypeptidase CC2672; hydrolase; HET | 99.78 | |
| 1o12_A | 376 | N-acetylglucosamine-6-phosphate deacetylase; struc | 99.77 | |
| 3mkv_A | 426 | Putative amidohydrolase; sargasso SEA, structural | 99.74 | |
| 3ggm_A | 81 | Uncharacterized protein BT9727_2919; bacillus cere | 99.6 | |
| 1bf6_A | 291 | Phosphotriesterase homology protein; hypothetical | 99.45 | |
| 2vc7_A | 314 | Aryldialkylphosphatase; phosphotriesterase, promis | 99.17 | |
| 2ob3_A | 330 | Parathion hydrolase; metalloenzyme, TIM barrel, ne | 99.13 | |
| 1zzm_A | 259 | Putative deoxyribonuclease YJJV; hydrolaze, zinc, | 99.0 | |
| 3rcm_A | 287 | TATD family hydrolase; HET: CIT; 2.05A {Pseudomona | 98.83 | |
| 3k2g_A | 364 | Resiniferatoxin-binding, phosphotriesterase- relat | 98.77 | |
| 2y1h_A | 272 | Putative deoxyribonuclease tatdn3; hydrolase; 2.50 | 98.76 | |
| 3pnz_A | 330 | Phosphotriesterase family protein; amidohydrolase | 98.76 | |
| 1xwy_A | 264 | DNAse TATD, deoxyribonuclease TATD; TIM barrael, z | 98.69 | |
| 3rhg_A | 365 | Putative phophotriesterase; hydrolase, amidohydrol | 98.67 | |
| 3gtx_A | 339 | Organophosphorus hydrolase; mutant, amidohydrolase | 98.62 | |
| 3ovg_A | 363 | Amidohydrolase; structural genomics, PSI-2, protei | 98.61 | |
| 3tn4_A | 360 | Phosphotriesterase; lactonase, hydrolase; HET: KCX | 98.6 | |
| 3gg7_A | 254 | Uncharacterized metalloprotein; structural genomic | 98.51 | |
| 1yix_A | 265 | Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW | 98.51 | |
| 4i6k_A | 294 | Amidohydrolase family protein; enzyme function ini | 98.45 | |
| 2gzx_A | 265 | Putative TATD related DNAse; deoxyribonuclease, NE | 98.39 | |
| 3ipw_A | 325 | Hydrolase TATD family protein; niaid, ssgcid, seat | 98.38 | |
| 3cjp_A | 272 | Predicted amidohydrolase, dihydroorotase family; s | 98.28 | |
| 1j6o_A | 268 | TATD-related deoxyribonuclease; structural genomic | 98.26 | |
| 2ffi_A | 288 | 2-pyrone-4,6-dicarboxylic acid hydrolase, putativ; | 98.26 | |
| 3rys_A | 343 | Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2 | 98.26 | |
| 2xio_A | 301 | Putative deoxyribonuclease tatdn1; hydrolase; 1.19 | 98.13 | |
| 3pao_A | 326 | Adenosine deaminase; structural genomics, PSI-2, p | 98.12 | |
| 2pgf_A | 371 | Adenosine deaminase; metallo-dependent hydrolase, | 98.04 | |
| 4d9a_A | 303 | 2-pyrone-4,6-dicarbaxylate hydrolase; structural g | 97.84 | |
| 3iar_A | 367 | Adenosine deaminase; purine metabolism structural | 97.72 | |
| 4do7_A | 303 | Amidohydrolase 2; enzyme function initiative, EFI, | 97.65 | |
| 3guw_A | 261 | Uncharacterized protein AF_1765; alpha-beta protei | 97.5 | |
| 2dvt_A | 327 | Thermophilic reversible gamma-resorcylate decarbo; | 97.14 | |
| 3irs_A | 291 | Uncharacterized protein BB4693; structural genomic | 96.89 | |
| 2f6k_A | 307 | Metal-dependent hydrolase; metal dependent hydroly | 96.87 | |
| 4gxw_A | 380 | Adenosine deaminase; amidohydrolase, COG1816, EFI, | 96.49 | |
| 3e2v_A | 401 | 3'-5'-exonuclease; structural genomics, hydrolase, | 95.9 | |
| 2wm1_A | 336 | 2-amino-3-carboxymuconate-6-semialdehyde decarboxy | 94.73 | |
| 2hbv_A | 334 | 2-amino-3-carboxymuconate 6-semialdehyde decarbox; | 94.64 | |
| 2wje_A | 247 | CPS4B, tyrosine-protein phosphatase CPSB; capsule | 94.51 | |
| 3lgd_A | 508 | Adenosine deaminase CECR1; TIM barrel, dimerizatio | 94.22 | |
| 3qy7_A | 262 | Tyrosine-protein phosphatase YWQE; TIM barrel, pol | 93.22 | |
| 2a3l_A | 701 | AMP deaminase, AMPD; atampd, AT2G38280, adenosine | 93.2 | |
| 3ij6_A | 312 | Uncharacterized metal-dependent hydrolase; structu | 92.3 | |
| 3nur_A | 357 | Amidohydrolase; TIM barrel; 1.75A {Staphylococcus | 90.7 | |
| 3lmz_A | 257 | Putative sugar isomerase; structural genomics, joi | 85.59 | |
| 3aam_A | 270 | Endonuclease IV, endoiv; DNA repair, base excision | 85.54 | |
| 3p6l_A | 262 | Sugar phosphate isomerase/epimerase; TIM barrel, s | 84.96 | |
| 2yxo_A | 267 | Histidinol phosphatase; metal-dependent, hydrolase | 84.5 | |
| 2gwg_A | 350 | 4-oxalomesaconate hydratase; TIM-barrel like prote | 83.38 | |
| 1aj0_A | 282 | DHPS, dihydropteroate synthase; antibiotic, resist | 80.22 |
| >3dc8_A Dihydropyrimidinase; TIM-barrel, hydrolase; HET: KCX; 1.85A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-58 Score=460.85 Aligned_cols=370 Identities=50% Similarity=0.857 Sum_probs=331.1
Q ss_pred cEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHHHHHH
Q 014320 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAA 133 (427)
Q Consensus 54 ~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~~ 133 (427)
+++|+|++|+++++..+++|+|+||||++|++..+ +.++||++|++|+|||||+|+|+.++..+..+++++..++++
T Consensus 2 ~~~i~~~~v~~~~~~~~~~v~I~~G~I~~i~~~~~---~~~viD~~g~~v~PG~ID~H~H~~~~~~~~~~~e~~~~~~~a 78 (490)
T 3dc8_A 2 STVIKGGTIVTADLTYKADVKVEGGRIVEIGPNLS---GAETLDATGCYVMPGGIDPHTHLEMPFMGTYSSDDFESGTRA 78 (490)
T ss_dssp CEEEESCEEECSSCEEECEEEEETTEEEEEESSCC---CSEEEECTTCEEEECEEEEEECTTCEETTEECSCCHHHHHHH
T ss_pred cEEEEccEEECCCCceeeeEEEECCEEEEeccCCC---CCeEEECCCCEEecCEEeeccccCCCCCCCCCHHHHHHHHHH
Confidence 57999999999888778999999999999998643 568999999999999999999998874333688999999999
Q ss_pred HHcCCceEEecCcCCCCC-cHHHHHHHHHHHhccccceeceeccccCCChhhHHHHHHHHHHcCCCeEEEEEecCCCccC
Q 014320 134 ALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI 212 (427)
Q Consensus 134 ~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~ 212 (427)
++++||||++|+....+. ...+.++.+.+.+.+..+++.++.......++.++++.++.++.|+.++|+|+++.+.+.+
T Consensus 79 a~~~GvTtv~~~~~~~p~~~~~~~~~~~~~~a~~~~~d~~~~~~~~~~~~~~l~el~~l~~~~G~~~~k~~~~~~~~~~~ 158 (490)
T 3dc8_A 79 ALAGGTTMVVDFALPSPGQSLLEALTMWDNKSTRANCDYSFHMAITWWGEQVFNEMETIVKDKGINTFKHFMAYKGALMV 158 (490)
T ss_dssp HHHTTEEEEEEEECCC-CCCHHHHHHHHHHHTTTCSSEEEEEEECCSCSHHHHHHHHHHHHHSCCCEEEEESCSTTTTBC
T ss_pred HHHcCEEeecccCCCCCCcCHHHHHHHHHHHhhcccceeeeEEEEecCcHHHHHHHHHHHHhCCCCEEEEEecCCCCccC
Confidence 999999999998754433 5677777777776677888888877766666667888888756899999999999888888
Q ss_pred CHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCC
Q 014320 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292 (427)
Q Consensus 213 ~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~ 292 (427)
++++++++++.++++|+++++|+|+.+.+....+.+...|..+++.|+..+|..+|..++.+.+.+++..++++|++|++
T Consensus 159 ~~~~l~~~~~~a~~~g~~v~~HaE~~~~i~~~~~~~~~~g~~~~~~~~~~rP~~~E~~av~r~i~la~~~g~~lhi~HvS 238 (490)
T 3dc8_A 159 DDDEMFSSFQRCAALGALPLVHAENGDVVAQLQAKLLAEGNSGPEAHAYSRPAEVEGEAANRAIMIADMAGCPVYIVHTS 238 (490)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCSHHHHHHTSCHHHHHHHHHHHHHHHHHHTCCEEESSCC
T ss_pred CHHHHHHHHHHHHhcCCEEEEecCChHHHHHHHHHHHhcCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCcEEEEeCC
Confidence 99999999999999999999999999888777778888999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCC
Q 014320 293 SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFN 372 (427)
Q Consensus 293 ~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~ 372 (427)
+.++++.++.+|++|++|++++||||++++++.+...+|..+..++++||+|++.++++||+++++|.+++++|||+|++
T Consensus 239 t~~~~~li~~ak~~G~~Vt~e~~ph~l~l~~~~~~~~~~~~~~~~~~~Pplr~~~d~~aL~~~l~~G~id~i~sDh~p~~ 318 (490)
T 3dc8_A 239 CEQAHEAIRRARAKGMRVFGEPLIQHLTLDETEYFDKDWDHAARRVMSPPFRNKLHQDSLWAGLASGSLQVVATDHCAFT 318 (490)
T ss_dssp SHHHHHHHHHHHHTTCCEEECCBHHHHHCCGGGGGCSCHHHHHHTCCSSCCCCGGGHHHHHHHHHHTSSCCCBCCBCCCC
T ss_pred CHHHHHHHHHHHHCCCeEEEEEchHHheeCHHHhcCcCcccCCceEECCCCCChHHHHHHHHHHhcCCceEEECCCCCCC
Confidence 99999999999999999999999999999999886543332468899999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 373 STQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 373 ~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
...|..+.++|+.+++|++|+|+++|++|+.++..+++|++++++++|.|||++
T Consensus 319 ~~~K~~g~~~f~~~~~G~~gle~~l~~~~~~~v~~~~l~~~~~~~~~t~~~A~~ 372 (490)
T 3dc8_A 319 TEQKRFGVGDFTRIPNGTGGLEDRMPMLWTYGVATGRITMNEFVAVTSTNIAKI 372 (490)
T ss_dssp HHHHGGGTTCGGGSCCCBCCTTTHHHHHHHHHTTTTSSCHHHHHHHHTHHHHHH
T ss_pred HHHhhccCCChhhCCCChHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 998877677999999999999999999998778899999999999999999985
|
| >3sfw_A Dihydropyrimidinase; hydrolase, zinc binding; HET: KCX; 1.73A {Brevibacillus agri} PDB: 1yny_A 1k1d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-54 Score=431.36 Aligned_cols=371 Identities=46% Similarity=0.711 Sum_probs=324.5
Q ss_pred cEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHHHHHH
Q 014320 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAA 133 (427)
Q Consensus 54 ~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~~ 133 (427)
+++|+|++|++++...+++|+|+||||++|++... +.+.++||++|++|+|||||+|+|+..++.+..+++++..+++.
T Consensus 2 ~~~i~n~~v~~~~~~~~~~v~i~~g~I~~i~~~~~-~~~~~viD~~g~~v~PG~ID~H~H~~~~~~~~~~~e~~~~~~~~ 80 (461)
T 3sfw_A 2 KKWIRNGTVVTASDTYQADVLIDGEKVVAIGSDLQ-ATDAEVIDATGYYLLPGGIDPHTHLDMPFGGTVTSDNFFTGTKA 80 (461)
T ss_dssp EEEEESCEEECSSCEEECEEEEETTEEEEEESCCC-CSSCEEEECTTCEEEECEEEEEECTTCEETTEECSCCHHHHHHH
T ss_pred cEEEECeEEECCCCcEEEEEEEECCEEEEEeCCCC-CCCCeEEECCCCEEEeeeEEeEeccCcCCCCcccHhHHHHHHHH
Confidence 47999999999887778999999999999998653 34678999999999999999999998765456678889999999
Q ss_pred HHcCCceEEecCcCCCCC-cHHHHHHHHHHHh-ccccceeceeccccCCChhhHHHHHHHHHHcCCCeEEEEEecCCCcc
Q 014320 134 ALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM 211 (427)
Q Consensus 134 ~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~ 211 (427)
++++||||++|+....+. ...+.++.+.... .+..++++++.......++.+++++++.++.|+.++|+++++.+.+.
T Consensus 81 ~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~ik~~~~~~~~~~ 160 (461)
T 3sfw_A 81 AAFGGTTSIVDFCLTSKGESLHSAIATWHEKARGKAVIDYGFHLMVSDANDHVLEELESVVNNEGITSLKVFMAYKNVLM 160 (461)
T ss_dssp HHHTTEEEEEEEECCCTTSCHHHHHHHHHHHHTTTCSSEEEEEEECSCCCHHHHHHHHHHHHTSCCCEEEEESSSTTTTB
T ss_pred HHhCCEEEEEccCCCCCcchHHHHHHHHHHHhhcCcEEEEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEEEecCCCcc
Confidence 999999999998654333 5666666665554 35777887776666566777888999883389999999999877778
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcC
Q 014320 212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (427)
Q Consensus 212 ~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~ 291 (427)
+++++++++++.|+++|+++.+|+++...+....+.+...|...+..|...+|..+|..++.+.+.+++..++++|++|+
T Consensus 161 ~~~~~l~~~~~~a~~~g~~v~~Hae~~~~~~~~~~~~~~~G~~~~~~~~~~~p~~~e~~av~~~~~la~~~g~~~hi~H~ 240 (461)
T 3sfw_A 161 ADDETLFKTLIRAKELGALVQVHAENGDVLDYLTKQALAEGNTDPIYHAYTRPPEAEGEATGRAIALTALADAQLYVVHV 240 (461)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCSTHHHHHTSCHHHHHHHHHHHHHHHHHTTCEEEECSC
T ss_pred cCHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHhcCCCChhHhcccCCHHHHHHHHHHHHHHHHHhCCCEEEEec
Confidence 89999999999999999999999999988888777888899999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCC
Q 014320 292 MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAF 371 (427)
Q Consensus 292 ~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~ 371 (427)
++.++++.++.+|++|++|++++||||++++++.+...++. +..++++||+|++.++++||+++++|++++++|||+|+
T Consensus 241 s~~~~l~~i~~ak~~G~~vt~e~~ph~l~l~~~~~~~~~~~-~~~~~~~Pplr~~~~~~aL~~~l~~G~~~~i~sD~~p~ 319 (461)
T 3sfw_A 241 SCADAVRRIAEAREKGWNVYGETCPQYLVLDITALEKPDFE-GAKYVWSPPLREKWNQDVLWSALKNGILQTVGSDHCPF 319 (461)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEECHHHHHCCGGGGGCTTTG-GGGGCCSSCCCCTHHHHHHHHHHHTTSSCEECCCBCCC
T ss_pred CcHHHHHHHHHHHhcCCcEEEeeccceEEEcHHHhcCcccc-CCcEEEcCCCCChHHHHHHHHHHhcCCceEEECCCCCC
Confidence 99999999999999999999999999999999987543222 36889999999999999999999999999999999999
Q ss_pred Ch-hhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 372 NS-TQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 372 ~~-~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
+. ..|..+.++|+.+++|++|++++++.+++.++..++++++++++++|.|||++
T Consensus 320 ~~~~~k~~~~~~~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~t~~~a~~ 375 (461)
T 3sfw_A 320 NFSGQKELGRRDFTKIPNGGPIIEDRMTILFSEGVRKGKISLNQFVDITSTKVAKL 375 (461)
T ss_dssp CTTTTGGGGTTCGGGSCCCBCCTTTHHHHHHHHTTTTTSSCHHHHHHHHTHHHHHH
T ss_pred CchhhhhcccCCHhhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHH
Confidence 84 44434456899999999999999999998788888999999999999999974
|
| >3e74_A Allantoinase; (beta/alpha)8-barrel domain, small beta-sheet domain, hydrolase, metal-binding, purine metabolism, zinc; HET: KCX; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-52 Score=416.50 Aligned_cols=362 Identities=27% Similarity=0.359 Sum_probs=300.9
Q ss_pred CCCccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHH
Q 014320 50 QSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS 129 (427)
Q Consensus 50 ~~~~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~ 129 (427)
.|+.+++|+|++|++++...+++|+|+||||++|++.... ..++||++|++|+|||||+|+|+..+ +...++++.+
T Consensus 20 ~m~~~~~i~~~~v~~~~~~~~~~v~i~~g~I~~i~~~~~~--~~~~id~~g~~v~PG~iD~H~H~~~~--g~~~~~~~~~ 95 (473)
T 3e74_A 20 HMSFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDLGD--AKEVMDASGLVVSPGMVDAHTHISEP--GRSHWEGYET 95 (473)
T ss_dssp --CEEEEEESCEEECSSCEEECEEEEETTEEEEEESCCCC--EEEEEECTTCEEEECEEEEEECC-----------CHHH
T ss_pred cCcCCEEEEeeEEECCCCceeeeEEEECCEEEEEcCCCCC--CCcEEECCCCEEecCEEEEecccCCC--CCCcHHHHHH
Confidence 3467899999999999887789999999999999986442 26899999999999999999999887 7778889999
Q ss_pred HHHHHHcCCceEEecCc-CCCCC-cHHHHHHHHHHHh-ccccceeceeccccCCChhhHHHHHHHHHHcCCCeEEEEEec
Q 014320 130 GQAAALAGGTTMHIDFV-IPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY 206 (427)
Q Consensus 130 ~~~~~l~~GvTtv~d~~-~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~~ 206 (427)
.++.++++||||++|+. ...+. ...+.++...+.. ....+++.++...... .++++.++. ..|+.++|+|+++
T Consensus 96 ~~~~~~~~G~Tt~~~~~~~t~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~---~~~~l~~l~-~~G~~~~K~~~~~ 171 (473)
T 3e74_A 96 GTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSY---NIDRLHELD-EVGVVGFKCFVAT 171 (473)
T ss_dssp HHHHHHHTTEEEEEECCSSSSSCSCSHHHHHHHHHHHTTTCSSEEEECEECCTT---CTTTHHHHH-HHTCSCEEEEC--
T ss_pred HHHHHHhCCEEEEEcCcccCCCCcccHHHHHHHHHHhccCCeEEEEEEeecccc---hHHHHHHHH-HcCCCEEEEeccc
Confidence 99999999999999997 44332 3445555544443 3467787776654432 245567776 6799999999874
Q ss_pred -------CCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHH
Q 014320 207 -------KGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLA 279 (427)
Q Consensus 207 -------~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~ 279 (427)
++.+.++++.++++++.++++|+++.+|+++...+..........|...++.|...+|..+|..++.+.+.++
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~av~~~l~la 251 (473)
T 3e74_A 172 CGDRGIDNDFRDVNDWQFFKGAQKLGELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLA 251 (473)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHTCCEEEECSCHHHHHHHHHHHHHHTCCSHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred cCCcccccccCCCCHHHHHHHHHHHHhcCCeEEEEecCHHHHHHHhhHHHhcCCcChhhcccCCCHHHHHHHHHHHHHHH
Confidence 2445678999999999999999999999998876665556677789999999999999999999999999999
Q ss_pred HhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcC
Q 014320 280 EFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATG 359 (427)
Q Consensus 280 ~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G 359 (427)
++.++++|++|+++.++++.++++|++|++|++++||||++++++.+.. .+..++++||+|++.++++||+++++|
T Consensus 252 ~~~g~~lhi~Hvst~~~l~li~~ak~~G~~vt~e~~ph~l~l~~~~~~~----~~~~~~~~Pplr~~~~~~~L~~~l~~G 327 (473)
T 3e74_A 252 KVAGCRLHVCHVSSPEGVEEVTRARQEGQDITCESCPHYFVLDTDQFEE----IGTLAKCSPPIRDLENQKGMWEKLFNG 327 (473)
T ss_dssp HHHTCCEEECSCCSHHHHHHHHHHHHTTCCEEEEECTHHHHCCHHHHHH----HCGGGCCSSCCCCHHHHHHHHHHHHTT
T ss_pred HHhCCcEEEEeCCCHHHHHHHHHHHHcCCCeEEEEchHhhhcCHHHHhC----CCCcEEEeCCCCCHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999887743 136788999999999999999999999
Q ss_pred CceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 360 ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 360 ~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
++++|+|||+|++...|. .+|+.++.|++|++++++++++.++.+++++++++++++|.|||++
T Consensus 328 ~~~~i~tDh~p~~~~~k~---~~f~~~~~G~~g~e~~l~~~~~~~~~~~~~~~~~~~~~~t~~~a~~ 391 (473)
T 3e74_A 328 EIDCLVSDHSPCPPEMKA---GNIMKAWGGIAGLQSCMDVMFDEAVQKRGMSLPMFGKLMATNAADI 391 (473)
T ss_dssp CCCEECCCBCCCCTTTTC---SCTTTSCCCBCCGGGHHHHHHHHHTTTTCCCHHHHHHHHTHHHHHH
T ss_pred CCcEEEeCCCCCCHHHcc---cChhhcCCCcccHHhHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHH
Confidence 999999999999998884 4899999999999999999997788889999999999999999985
|
| >2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich, hydrolase; HET: KCX; 2.40A {Lachancea kluyveri} SCOP: b.92.1.3 c.1.9.6 PDB: 2fvk_A* 2fvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-51 Score=418.72 Aligned_cols=372 Identities=32% Similarity=0.524 Sum_probs=305.6
Q ss_pred ccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcC-CCCChhhHHHHH
Q 014320 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GSETIDDFFSGQ 131 (427)
Q Consensus 53 ~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~-g~~~~e~~~~~~ 131 (427)
++++|+|++|++++...+++|+|+||||++|++....+.+.++||++|++|+|||||+|+|+.++.. +..++++++.++
T Consensus 3 m~~li~n~~vv~~~~~~~~~v~I~~g~I~~Ig~~~~~~~~~~viD~~g~~v~PGlID~H~H~~~~~~~~~~~~e~~~~~~ 82 (559)
T 2fty_A 3 YDLIIKNGIICTASDIYAAEIAVNNGKVQLIAASIDPSLGSEVIDAEGAFITPGGIDAHVHVDEPLKLLGDVVDTMEHAT 82 (559)
T ss_dssp EEEEEESCEEECSSCEEECEEEEETTEEEEEESCCCGGGEEEEEECTTCEEEECEEECCBCCCCTTCTTSCCSCCHHHHH
T ss_pred ceEEEECcEEEcCCCceeeeEEEECCEEEEecCCCCCCCCCeEEeCCCCEEEcCEEeeccCcCccccccCCCHHHHHHHH
Confidence 4689999999998877789999999999999975432234579999999999999999999987631 233678888889
Q ss_pred HHHHcCCceEEecCcCCC---CC-c-HHHHHH-HHHHHhc-cccceeceeccccCC---Chh---hH-HHHHHHHHHcCC
Q 014320 132 AAALAGGTTMHIDFVIPI---NG-S-LTAGFE-AYEKKAK-NSCMDYGFHMAITKW---DEV---VS-DEMEVMVKEKGI 197 (427)
Q Consensus 132 ~~~l~~GvTtv~d~~~~~---~~-~-~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~---~~~---~~-~~~~~l~~~~g~ 197 (427)
+.++++||||++|+.... .. . ..+.+. ...+... +..++++++...... .++ .+ +++++++++.|+
T Consensus 83 ~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~g~~l~~~~~~l~~~~G~ 162 (559)
T 2fty_A 83 RSAVAGGTTTVVAFSTQDVSKKGPSALAESVKLDVDEYSEQTLYCDYGLHLILFQIEKPSVEARELLDVQLQAAYNDYGV 162 (559)
T ss_dssp HHHHHTTEEEEEEEEECCTTCCSTTHHHHHHHHHHHHHTTSCCSSEEEEEEECCCCCSSHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCcEEEEEECcCcccCCcchHHHHHHHHHHHHHHHhhcceeEEEeeeeeccCcCCCchhhhhHHHHHHHHHHHCCC
Confidence 999999999999987543 22 2 334330 0022233 356677665443333 233 55 677777755699
Q ss_pred CeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHH
Q 014320 198 NSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIR 277 (427)
Q Consensus 198 ~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~ 277 (427)
..+|+++++++ ..+++++++++++.|+++|+++++|+++...+....+.+.+.|...++.|...+|...|..++.+.+.
T Consensus 163 ~~iki~~~~~~-~~~s~e~l~~~~~~A~~~g~~v~~H~e~~~~i~~~~~~~~~~G~~~~~~~~~~~p~~~E~~av~~~i~ 241 (559)
T 2fty_A 163 SSVKMFMTYPG-LQISDYDIMSAMYATRKNGFTTMLHAENGDMVKWMIEALEEQGLTDAYYHGVSRPSIVEGEATNRAIT 241 (559)
T ss_dssp CEEEEESSSTT-TBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHHTTCCSTTHHHHTSCHHHHHHHHHHHHH
T ss_pred CEEEEEecCCC-CcCCHHHHHHHHHHHHhCCCEEEEECCChHHHHHHHHHHHhcCCCChhhcccCCCHHHHHHHHHHHHH
Confidence 99999998876 67899999999999999999999999988877776667788999999999999999999999999999
Q ss_pred HHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCccccc-------------------------C--CC
Q 014320 278 LAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLW-------------------------H--SD 330 (427)
Q Consensus 278 ~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~-------------------------~--~~ 330 (427)
+++..++++|++|+++.++++.++++++.|++|++++||+|++++++.+. . ++
T Consensus 242 la~~~g~~vhi~H~s~~~~~~~i~~ak~~G~~Vt~e~~p~~l~l~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~ 321 (559)
T 2fty_A 242 LATTMDTPILFVHVSSPQAAEVIKQAQTKGLKVYAETCPQYALLSDAITRCHHHGEVESYGVGIDLSSISESPFTNPDDR 321 (559)
T ss_dssp HHHHTTCCEEECSCCCHHHHHHHHHHHHTTCCEEEEECHHHHHCCGGGGSCC--------CCSCCGGGCSSSTTTCTTCT
T ss_pred HHHHhCCCEEEEcCCCHHHHHHHHHHHHcCCceEEeecCcccccCHHHhhccccccccccccccCccccccccccccCcc
Confidence 99999999999999999889999999999999999999999999876651 0 11
Q ss_pred cccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhh-------------hcCCCCCccCCCCCchhhHhH
Q 014320 331 FVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQK-------------AFGIDDFRKIPNGVNGIEERM 397 (427)
Q Consensus 331 ~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~-------------~~~~~~~~~~~~G~~~~e~~l 397 (427)
+ .+..++++||+|++.++++||+++++|++++|||||+|++...| ..+.++|+.++.|++|+|+++
T Consensus 322 ~-~~~~~~~~PplR~~~~~~~l~~~l~~G~~~~igTD~~p~~~~~k~~~~~k~~~~~~~~~~~~~f~~~~~G~~g~e~~l 400 (559)
T 2fty_A 322 F-IGSKYICSPPIRPEGTQKSIWKGMNNGTFTIVGSDHCSYNYYEKTSTASKHRAFDPENNKNGEFRYIPNGLPGVCTRM 400 (559)
T ss_dssp T-GGGGGCCSSCCCCTTSHHHHHHHHHTTSCSEECCCBCCCBSSCCSSTTBGGGGEEGGGTEESCGGGSCCCBCCTTTHH
T ss_pred c-cccCcEECCCCCCHHHHHHHHHHHhcCceEEEEeCCCCCChhhccccccccccccccccccCCHhhCCCCCccHHHHH
Confidence 1 23677899999999999999999999999999999999987643 111248999999999999999
Q ss_pred HHHHHHHHhcCCC-CHHHHHHHHchhhhcC
Q 014320 398 HLVWDTMVESGQI-SVTDYVRLTSTEWGRL 426 (427)
Q Consensus 398 ~~~~~~~~~~~~l-~l~~~v~~~t~npA~~ 426 (427)
+++|..++..+.| +++++++++|.|||++
T Consensus 401 ~~ll~~~v~~~~l~~~~~~~~~~t~~~A~~ 430 (559)
T 2fty_A 401 PLLYDYGYLRGNLTSMMKLVEIQCTNPAKV 430 (559)
T ss_dssp HHHHHHTTTTTSSSCHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHhHHHHHH
Confidence 9999777888889 9999999999999985
|
| >2ftw_A Dihydropyrimidine amidohydrolase; (beta-alpha)8-barrel, beta-sandwich; HET: KCX; 2.05A {Dictyostelium discoideum} SCOP: b.92.1.3 c.1.9.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-50 Score=405.14 Aligned_cols=375 Identities=54% Similarity=0.889 Sum_probs=316.7
Q ss_pred CccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHHHH
Q 014320 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~ 131 (427)
+.+++|+|++|++++...+++|+|+||||++|++....+.+.++||++|++|+|||||+|+|+..+..+..++++++.++
T Consensus 7 ~~~~lI~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~v~PGlID~H~H~~~~~~~~~~~e~~~~~~ 86 (521)
T 2ftw_A 7 TGTILIKNGTVVNDDRYFKSDVLVENGIIKEISKNIEPKEGIKVVDATDKLLLPGGIDTHTHFQLPFMGTVSVDDFDIGT 86 (521)
T ss_dssp CCCEEEESCEEECSSCEEECEEEEETTEEEEEESCCCCCSSCCEEECTTCEEEECEEEEEECTTCEETTEECSSCHHHHH
T ss_pred cCCEEEECcEEECCCCceeeeEEEECCEEEEecCCCCCCCCCeEEECCCCEEecCEEeeecccCcCCCCccCHHHHHHHH
Confidence 45789999999998777789999999999999986443345689999999999999999999987644445678888889
Q ss_pred HHHHcCCceEEecCcCCCC-CcHHHHHHHHHHHh-ccccceeceeccccCCChhhHHHHHHHHHHcCCCeEEEEEecCCC
Q 014320 132 AAALAGGTTMHIDFVIPIN-GSLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGS 209 (427)
Q Consensus 132 ~~~l~~GvTtv~d~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~~~~~ 209 (427)
+.++++||||++|+..+.. ....+.++...... ....++++++.....+.++..+++.++.++.|+..+|+++++++.
T Consensus 87 ~~a~~~G~Ttv~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~g~h~~~~~~~~~~~~~l~~l~~~~G~~~~k~~~~~~~~ 166 (521)
T 2ftw_A 87 QAAVAGGTTFIIDFVIPTRGQSLLEAYDQWKKWADEKVNCDYSLHVAITWWSEQVSREMEILVKERGVNSFKCFMAYKNS 166 (521)
T ss_dssp HHHHHTTEEEEEEEECCCTTCCHHHHHHHHHHHHHTTCSSEEEEEEECCSCCHHHHHHHHHHHHHSCCCEEEEESSCTTT
T ss_pred HHHHhCCcceecCcCCCCCCcCHHHHHHHHHHHhhcCceeeEeeEEeecCCChhHHHHHHHHHHhCCCCEEEEEeccCCC
Confidence 9999999999999764332 24556666555443 235566777665555555666778887756799999999988777
Q ss_pred ccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEE
Q 014320 210 FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV 289 (427)
Q Consensus 210 ~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~ 289 (427)
..+++++++++++.|+++|+++++|+++...+....+.+.+.|++++.+|...+|...+..++.+.+.++...++++|++
T Consensus 167 ~~~~~e~l~~~~~~A~~~g~~v~vH~e~~~~~~~~~~~l~~~G~~~~~~h~~~~~~~~e~~a~~~~~~la~~~~~p~hi~ 246 (521)
T 2ftw_A 167 FMVTDQEMYHIFKRCKELGAIAQVHAENGDMVFEGQKKMLEMGITGPEGHELSRPEALEAEATNRAIVIADSVCTPVYIV 246 (521)
T ss_dssp TBCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCSTHHHHHHSCTHHHHHHHHHHHHHHHHHTCCEEEC
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHHcCCCChhhccccCcHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 78899999999999999999999999987766677788999999999999888999999989999999999999999999
Q ss_pred cCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCC-cccHHHHHHHHhcCCceEEecCC
Q 014320 290 HVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRA-SGHNKALQAALATGILQLVGTDH 368 (427)
Q Consensus 290 H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~-~~~~~~l~~~l~~G~~~~lgSD~ 368 (427)
|+++...++.++++++.|+.+++++||+++.++...+...+|..+..++++||+|+ +.++++||+++.+|.++++||||
T Consensus 247 h~ss~~~~~~i~~~r~~G~~v~~e~~~~~L~~d~~~~~~~~~~~~~~~~~~Pplr~~~~~~~~l~~~l~~g~~~~~gsD~ 326 (521)
T 2ftw_A 247 HVQSIGAADVICKHRKEGVRVYGEPIAAGLGVDGSHMWNHDWRHAAAFVMGPPIRPDPRTKGVLMDYLARGDLDCVGTDN 326 (521)
T ss_dssp SCCCHHHHHHHHHHHHTTCCEEECCBHHHHHCCGGGGGCSSHHHHHTTCCSSCCCCCTTHHHHHHHHHHHTSSCCCBCCB
T ss_pred ecCcHHHHHHHHHHHHcCCeEEEEEcchhhccCHHHhcCCCcccCcceEEcCCCCCChhhHHHHHHHhcCCCEEEEEeCC
Confidence 99998888999999999999999999999999887664433322345678999998 78899999999999999999999
Q ss_pred CCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 369 CAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 369 ~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
+|++...|....++|..++.|++|++++++.+|..+++.++++++++++++|.|||++
T Consensus 327 ~~~~~~~k~~~~~~~~~~p~G~~G~e~~l~~~~~~~v~~~~l~~~~~~~~~t~~~A~~ 384 (521)
T 2ftw_A 327 CTFCADQKAMGKDDFTKIPNGVNGVEDRMSIVWENGVNTGKLTWCQFVRATSSERARI 384 (521)
T ss_dssp CCCCHHHHGGGTTCGGGSCCCBCCTTTHHHHHHHHHTTTTSSCHHHHHHHHTHHHHHH
T ss_pred CCCCHHHhhcccCChhhCCCCCccHHHHHHHHHHHHHhcCCCCHHHHHHHhChhHHHH
Confidence 9999877765556899999999999999999998788888999999999999999984
|
| >3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure initiative, PSI-2, NEW YORK structural genomix research CON nysgxrc; 2.60A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-50 Score=399.98 Aligned_cols=362 Identities=26% Similarity=0.353 Sum_probs=308.1
Q ss_pred CccEEEECcEEEcCCCceeeeEEEeCCeEEEeeC--CCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHH
Q 014320 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQP--NINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS 129 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~--~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~ 129 (427)
+++++|+|++|+++++..+++|+|+||||++|++ ..+ +.+.++||++|++|+|||||+|+|+..+ +..+.+++..
T Consensus 5 ~~~~~i~~~~v~~~~~~~~~~v~i~~g~I~~i~~~~~~~-~~~~~~id~~g~~v~PG~ID~H~H~~~~--~~~~~~~~~~ 81 (448)
T 3hm7_A 5 RFDLIIRSSTVVTETTTYRADVAIRNGIVSAITEPGSIS-SDDGPAIDGTGLHLFPGMVDVHVHFNEP--GRTEWEGFAS 81 (448)
T ss_dssp CCSEEEEEEEEECSSCEEEEEEEEETTEEEEEESTTCSC-TTSSCEEECTTCEEEECEEEEEECCCTT--TSGGGCCSHH
T ss_pred cccEEEEeeEEECCCCceEeEEEEECCEEEEeeCccCCC-CCCCeEEECCCCEEecCEEEeeeccCCC--CCCcHhHHHH
Confidence 4679999999999887778999999999999998 433 3457899999999999999999999877 5556677888
Q ss_pred HHHHHHcCCceEEecCc-CCCCC-cHHHHHHHHHHHh-ccccceeceeccccCCChhhHHHHHHHHHHcCCCeEEEEEec
Q 014320 130 GQAAALAGGTTMHIDFV-IPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY 206 (427)
Q Consensus 130 ~~~~~l~~GvTtv~d~~-~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~~ 206 (427)
..+.++++|||+++++. ...+. ...+.++...+.. ....+++.++.+..... .+++.++. +.|+.++|+++++
T Consensus 82 ~~~~~~~~Gvtt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~l~-~~g~~~~~~~l~~ 157 (448)
T 3hm7_A 82 GSKSLAAGGVTTYFDMPLNSNPPTITREELDKKRQLANEKSLVDYRFWGGLVPGN---IDHLQDLH-DGGVIGFKAFMSE 157 (448)
T ss_dssp HHHHHHTTTEEEEEECSSSSSSCSCSHHHHHHHHTHHHHHCSSEEEEEEECCTTC---GGGHHHHH-HTTCSEEEEESSS
T ss_pred HHHHHHhCCEEEEEeCCCCCCCCCChHHHHHHHHHHhccCCeeEEEEEEEecccC---HHHHHHHH-HcCCCEEEEeecc
Confidence 88999999999999986 43322 3344444444333 23566776665544322 45567776 5899999999987
Q ss_pred CCC---ccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcC
Q 014320 207 KGS---FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN 283 (427)
Q Consensus 207 ~~~---~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g 283 (427)
... ...+++.++++++.|+++|+++.+|+++...+....+.+...|......|+.++|..+|..++.+.+.++++.+
T Consensus 158 ~~~~~~~~~~~~~l~~~l~~a~~~g~~v~vH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~av~~~~~la~~~g 237 (448)
T 3hm7_A 158 CGTDDFQFSHDETLLKGMKKIAALGSILAVHAESNEMVNALTTIAIEEQRLTVKDYSEARPIVSELEAVERILRFAQLTC 237 (448)
T ss_dssp CSSSSSCCCCHHHHHHHHHHHHHHTCCEEEECCCHHHHHHHHHHHHHTTCCSHHHHHHHSCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCccCcCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCcChhhccccCCHHHHHHHHHHHHHHHHHhC
Confidence 543 44589999999999999999999999998877776777888999999999999999999999999999999999
Q ss_pred CCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceE
Q 014320 284 TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQL 363 (427)
Q Consensus 284 ~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~ 363 (427)
++++++|+++.+.++.+++++++|++|++++||||++++++.+.. .+..++++||+|.+.+++.||+++++|++++
T Consensus 238 ~~~~i~H~s~~~~~~~i~~ak~~G~~v~~e~~ph~l~l~~~~~~~----~~~~~~~~Pplr~~~~~~~l~~~l~~g~~~~ 313 (448)
T 3hm7_A 238 CPIHICHVSSRKVLKRIKQAKGEGVNVSVETCPHYLLFSLDEFAE----IGYLAKCAPPLRERQEVEDLWDGLMAGEIDL 313 (448)
T ss_dssp CCEEECCCCCHHHHHHHHHHHHTTCCEEEEECHHHHHCCHHHHHH----HCSTTCCSSCCCCHHHHHHHHHHHHHTCCCE
T ss_pred CCEEEEeCCCHHHHHHHHHHHhcCCCEEEEechHHHccCHHHhcC----CCCeEEEcCCCCCHHHHHHHHHHHhcCCccE
Confidence 999999999999999999999999999999999999999887642 1367889999999999999999999999999
Q ss_pred EecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 364 VGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 364 lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
++|||+|++...|.. .+|+.++.|++|++++++.+++.++..++++++++++++|.|||++
T Consensus 314 i~tD~~p~~~~~k~~--~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~~~~~~~t~~~A~~ 374 (448)
T 3hm7_A 314 ISSDHSPSLPQMKTG--KTIFEVWGGIAGCQNTLAVMLTEGYHKRKMPLTQIVQLLSTEPAKR 374 (448)
T ss_dssp ECCCBCCCCGGGGCC--SSTTTSCCCBCCTTTHHHHHHHHTTTTTCCCHHHHHHHHTHHHHHH
T ss_pred EEeCCCCCCHHHccc--CCHhhCCCCCccHHHHHHHHHHHHHhcCCcCHHHHHHHHhHHHHHH
Confidence 999999999888854 2699999999999999999997778788999999999999999974
|
| >2vr2_A Dihydropyrimidinase; hydantoinase, metal-binding, disease mutation, dihydropyrimi amidohydrolase, nucleotide metabolism, DPYS, dhpase, hydrolase; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-49 Score=401.72 Aligned_cols=375 Identities=51% Similarity=0.871 Sum_probs=312.9
Q ss_pred CccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCc----eEEeCCCCEEeccccccccccccCcCCCCChhhH
Q 014320 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDV----KVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDF 127 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~----~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~ 127 (427)
+.+++|+|++|++++...+++|+|+||||++||+....+.+. ++||++|++|+|||||+|+|+..+..+..+++++
T Consensus 26 ~~~~lI~ng~Vv~~~~~~~~dV~I~dGrI~~Ig~~~~~~~~~~~~~~vIDa~G~~V~PG~ID~H~Hl~~~~~~~~~~e~~ 105 (541)
T 2vr2_A 26 PSRLLIRGGRVVNDDFSEVADVLVEDGVVRALGHDLLPPGGAPAGLRVLDAAGKLVLPGGIDTHTHMQFPFMGSRSIDDF 105 (541)
T ss_dssp -CEEEEESCEEECSSCEEECEEEEETTEEEEEEC-----------CEEEECTTSEEEECEEEEEECTTCBCSSSBCSCCT
T ss_pred cCCEEEECcEEEcCCCceEeeEEEECCEEEEeccCCCCCcccccCceEEECCCCEEccCEEEecccCCCCCCCCcCHHHH
Confidence 367999999999987767799999999999999864322222 7999999999999999999998875444567788
Q ss_pred HHHHHHHHcCCceEEecCcCCCC-CcHHHHHHHHHHHhc-cccceeceeccccCCChhhHHHHHHHHHHcCCCeEEEEEe
Q 014320 128 FSGQAAALAGGTTMHIDFVIPIN-GSLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMA 205 (427)
Q Consensus 128 ~~~~~~~l~~GvTtv~d~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~ 205 (427)
+.+++.++++||||++|+..+.. ....+.++....... ...++++++.....+.++..+++++++++.|+..+|++++
T Consensus 106 ~~~~~~al~~GvTtv~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~g~h~~~~~~~~~~~~el~~l~~~~G~~~~k~~~~ 185 (541)
T 2vr2_A 106 HQGTKAALSGGTTMIIDFAIPQKGGSLIEAFETWRSWADPKVCCDYSLHVAVTWWSDQVKEEMKILVQDKGVNSFKMFMA 185 (541)
T ss_dssp THHHHHHHTTTEEEEEEEECCCTTCCHHHHHHHHHHHHTTTCSSEEEEEEEECSCSHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred HHHHHHHHhCCeeeeccccCCCCCCCHHHHHHHHHHHhccCceEEEeeeecccCCCHHHHHHHHHHHHhCCCCEEEEEec
Confidence 88899999999999999864432 245566666555442 3556677665555555666777888775579999999999
Q ss_pred cCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCC
Q 014320 206 YKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP 285 (427)
Q Consensus 206 ~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~ 285 (427)
+++.+.+++++++++++.|+++|+++++|+|+...+....+.+.+.|++++++|...+|...+..++.+++.++...+++
T Consensus 186 ~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~h~~~~~~~~e~~a~~~~~~la~~~~~p 265 (541)
T 2vr2_A 186 YKDLYMVTDLELYEAFSRCKEIGAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAVNCP 265 (541)
T ss_dssp STTTTBCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCSTHHHHHTSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred cCCccCCCHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHHcCCCChhhccccchhHHHHHHHHHHHHHHHHhCCC
Confidence 88888889999999999999999999999998877667778899999999999988899999999999999999999999
Q ss_pred EEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCC-cccHHHHHHHHhcCCceEE
Q 014320 286 LYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRA-SGHNKALQAALATGILQLV 364 (427)
Q Consensus 286 ~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~-~~~~~~l~~~l~~G~~~~l 364 (427)
+++.|+++...++.++.+++.|+.|+++++|+++.++...+....|..+..++++||+|+ +.+++.||+++.+|+++++
T Consensus 266 ~~~~h~ss~~~~~~i~~ar~~G~~v~~e~~~~~L~~d~~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~g~~~~~ 345 (541)
T 2vr2_A 266 LYIVHVMSKSAAKVIADARRDGKVVYGEPIAASLGTDGTHYWNKEWHHAAHHVMGPPLRPDPSTPDFLMNLLANDDLTTT 345 (541)
T ss_dssp EEEEEECCHHHHHHHHHHHHTTCCEEEEEBHHHHHCCSGGGGCSSHHHHHTTCCSSCCCSCTTHHHHHHHHHHTTSSCCC
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCeEEEEeehhhhcCCHHHhcCccccccCceEECCCCCCCcchHHHHHHHHhcCCeEEE
Confidence 999999998888999999999999999999999988877654333333345678999998 6789999999999999999
Q ss_pred ecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 365 GTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 365 gSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
||||.|++...|....++|..++.|++|++++++.+|..+++.++++++++++++|.||||+
T Consensus 346 gtD~~~~~~~~k~~~~~~~~~~p~G~~G~e~~l~~~~~~~v~~~~l~~~~~~~~~T~~pA~~ 407 (541)
T 2vr2_A 346 GTDNCTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVHSGKMDENRFVAVTSTNAAKI 407 (541)
T ss_dssp BCCBCCCCHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTTTSSCHHHHHHHHTHHHHHH
T ss_pred EeCCCCCChHHhcccCCChhhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHH
Confidence 99999999888876667899999999999999999998788888899999999999999985
|
| >1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB: 1gkq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-48 Score=391.11 Aligned_cols=370 Identities=36% Similarity=0.622 Sum_probs=308.8
Q ss_pred EEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHHHHHHH
Q 014320 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAA 134 (427)
Q Consensus 55 ~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~~~ 134 (427)
++|+|++|++++...+++|+|+||||++|++....+.+.++||++|++|+|||||+|+|+.+++.+..++++++.+++.+
T Consensus 2 ~li~n~~vv~~~~~~~~~v~I~~g~I~~ig~~~~~~~~~~viD~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~ 81 (458)
T 1gkp_A 2 LLIKNGEIITADSRYKADIYAEGETITRIGQNLEAPPGTEVIDATGKYVFPGFIDPHVHIYLPFMATFAKDTHETGSKAA 81 (458)
T ss_dssp EEEESCEEEETTEEEECEEEESSSBCCEEESCCCCCTTCEEEECTTSEEEECEEEEEECSSCEETTEECSCCHHHHHHHH
T ss_pred EEEEeeEEECCCCceEeeEEEECCEEEEecCCCCCCCCCeEEECCCCEEecCEEecccCCCcCCCCCcCHhHHHHHHHHH
Confidence 68999999998766788999999999999986433345689999999999999999999987643444677888888899
Q ss_pred HcCCceEEecCcCCCC-CcHHHHHHHHHHHh-ccccceeceeccccCCChhhHHHHHHHHHHcCCCeEEEEEecCCCccC
Q 014320 135 LAGGTTMHIDFVIPIN-GSLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI 212 (427)
Q Consensus 135 l~~GvTtv~d~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~ 212 (427)
+++||||++|+....+ ....+.++...+.. .+..++++++.......++.+++++++. +.|+..+|+++++++...+
T Consensus 82 ~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~ 160 (458)
T 1gkp_A 82 LMGGTTTYIEMCCPSRNDDALEGYQLWKSKAEGNSYCDYTFHMAVSKFDEKTEGQLREIV-ADGISSFKIFLSYKNFFGV 160 (458)
T ss_dssp HHTTEEEEEEEECCCTTSCHHHHHHHHHHHHTTTCSSEEEEEEECCCCCTTHHHHHHHHH-HTTCCEEEEEECSTTTTBC
T ss_pred HhCCccEEEeCCCCCCCCCHHHHHHHHHHHhccCceeeEEEEEeecCCchhhHHHHHHHH-HhCCCEEEEEeccCCCcCC
Confidence 9999999999864322 24556666555443 3456677666544444555677888887 6799999999998877788
Q ss_pred CHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCC
Q 014320 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292 (427)
Q Consensus 213 ~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~ 292 (427)
++++++++++.|+++++++++|+|+...+....+.+.+.|...+.+|...+|...+..++.+.+.+++..+.+++++|++
T Consensus 161 ~~~~l~~~~~~a~~~~~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~H~~ 240 (458)
T 1gkp_A 161 DDGEMYQTLRLAKELGVIVTAHCENAELVGRLQQKLLSEGKTGPEWHEPSRPEAVEAEGTARFATFLETTGATGYVVHLS 240 (458)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHTTCCSGGGTTTTSCHHHHHHHHHHHHHHHHHHTCEEEECSCC
T ss_pred CHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHhcCCCChhhccCcCCHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 99999999999999999999999988887777777888999999999989999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCC
Q 014320 293 SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFN 372 (427)
Q Consensus 293 ~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~ 372 (427)
+.+.++.++.+++.|+.|++++||+|++++.+.+...+| .+..++++||+|.+.+++++|+++++|+++++||||.|++
T Consensus 241 ~~~~~~~i~~~~~~G~~v~~~~~p~~~~~~~~~~~~~~~-~g~~~~~~~p~r~~~~~~~l~~~~~~G~~~~~gtD~~~~~ 319 (458)
T 1gkp_A 241 CKPALDAAMAAKARGVPIYIESVIPHFLLDKTYAERGGV-EAMKYIMSPPLRDKRNQKVLWDALAQGFIDTVGTDHCPFD 319 (458)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEEEHHHHHCCGGGGGSCHH-HHHTTCCSSCCCCTHHHHHHHHHHHTTSSCEEECCBCCCC
T ss_pred CHHHHHHHHHHHHcCCeEEEEecccceeeCHHHhccccc-CCcceEEeCCCCCHHHHHHHHHHHhcCCeeEEECCCCCCC
Confidence 988889999999999999999999999988765532111 1234567899999999999999999999999999999998
Q ss_pred hhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 373 STQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 373 ~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
...|..+.++|+..+.|++|++++++.++..+++.+.+|++++++++|.||||+
T Consensus 320 ~~~k~~~~~~~~~~~~g~~g~~~~l~~~~~~~~~~~~ls~~~al~~~T~~pA~~ 373 (458)
T 1gkp_A 320 TEQKLLGKEAFTAIPNGIPAIEDRVNLLYTYGVSRGRLDIHRFVDAASTKAAKL 373 (458)
T ss_dssp HHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTSSSCCHHHHHHHHTHHHHHH
T ss_pred HHHhhcccCChhhCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHhhCHHHH
Confidence 876654446889999999999999999987777777799999999999999984
|
| >3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding, pyrimidine biosynthesis, structural genomics; 2.00A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-49 Score=394.88 Aligned_cols=355 Identities=25% Similarity=0.353 Sum_probs=287.0
Q ss_pred EEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHHHHHHH
Q 014320 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAA 134 (427)
Q Consensus 55 ~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~~~ 134 (427)
++|+|++|++.....+++|+|+||||++|++..+.+.+.++||++|++|+|||||+|+|+..+ +..+.+++...++.+
T Consensus 2 ~~i~~~~v~~~~~~~~~~v~i~~g~I~~i~~~~~~~~~~~~id~~g~~v~PG~iD~H~H~~~~--g~~~~~~~~~~~~~~ 79 (424)
T 3gri_A 2 KLIKNGKVLQNGELQQADILIDGKVIKQIAPAIEPSNGVDIIDAKGHFVSPGFVDVHVHLREP--GGEYKETIETGTKAA 79 (424)
T ss_dssp EEEESCEEEETTEEEECEEEEETTEEEEEESCCCCCSSCEEEECTTCEEEECEEEEEECCCTT--TCTTTCCHHHHHHHH
T ss_pred EEEEeeEEEcCCCceeeeEEEECCEEEEecCCCCCCCCCeEEECCCCEEEeCeEEeeecCCCC--CCCCHHHHHHHHHHH
Confidence 689999999944456899999999999999875544567899999999999999999999877 777888899999999
Q ss_pred HcCCceEEecCcCCCCC-cHHHHHHHHHHHhcc-ccceeceeccccC-CChhhHHHHHHHHHHcCCCeEEEEEecCCCcc
Q 014320 135 LAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN-SCMDYGFHMAITK-WDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM 211 (427)
Q Consensus 135 l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~ 211 (427)
+++|||+++++....+. ...+.++...+.... ...++..++.... ...+.+.++.++. +.|+..+ .+++.+.
T Consensus 80 ~~~G~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~-~~G~~~~----~~~~~~~ 154 (424)
T 3gri_A 80 ARGGFTTVCPMPNTRPVPDSVEHFEALQKLIDDNAQVRVLPYASITTRQLGKELVDFPALV-KEGAFAF----TDDGVGV 154 (424)
T ss_dssp HHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEECCCEESBGGGCSSSBCCHHHHH-TTTCCCE----EECSSCC
T ss_pred HhCCEEEEeECcCCCCCCChHHHHHHHHHHhccCCCceEEEEEEEecCCCcchHHHHHHHH-hcCcEEE----ecCCcCc
Confidence 99999999998754332 334444444443322 3344444433221 1222344566666 5676665 3456677
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcC
Q 014320 212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (427)
Q Consensus 212 ~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~ 291 (427)
.+++.++++++.|+++|+++++|+++...+... ....|....+.+...+|...|..++.+.+.+++..|++++++|+
T Consensus 155 ~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~---~~~~g~~~~~~~~~~~p~~~E~~~v~r~~~la~~~g~~~~i~H~ 231 (424)
T 3gri_A 155 QTASMMYEGMIEAAKVNKAIVAHCEDNSLIYGG---AMHEGKRSKELGIPGIPNICESVQIARDVLLAEAAGCHYHVCHV 231 (424)
T ss_dssp CSHHHHHHHHHHHHHHTCCEEECCCCGGGCTTC---CEESSHHHHHHTCCEECTHHHHHHHHHHHHHHHHHTCCEEECSC
T ss_pred CCHHHHHHHHHHHHhcCCEEEEeCCCHHHHhhh---hhhcCccchhhCCCCCCHHHHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 899999999999999999999999987643210 00011112234555699999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCC
Q 014320 292 MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAF 371 (427)
Q Consensus 292 ~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~ 371 (427)
++.+.++.++++|+.|++|++++||||++++++.+.. .+..++++||+|++.++++||+++++|++++++|||+|+
T Consensus 232 s~~~~~~~i~~ak~~G~~v~~e~~ph~l~l~~~~~~~----~~~~~~~~Pplr~~~~~~~L~~~l~~G~i~~igtDhap~ 307 (424)
T 3gri_A 232 STKESVRVIRDAKRAGIHVTAEVTPHHLLLTEDDIPG----NNAIYKMNPPLRSTEDREALLEGLLDGTIDCIATDHAPH 307 (424)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEEECHHHHHCCGGGCCS----SCGGGCCSSCCCCHHHHHHHHHHHHTTSSCEECCCBCCC
T ss_pred CCHHHHHHHHHHHHcCCCEEEEecHHHHhcCHHHHhC----cCceEEEeCCCCCHHHHHHHHHHHhcCCceEEEcCCCCC
Confidence 9999999999999999999999999999999888753 236888999999999999999999999999999999999
Q ss_pred ChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 372 NSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 372 ~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
+...|. .+|+.++.|++|+++++|.+++.++.+++++++++++++|.|||++
T Consensus 308 ~~~~k~---~~~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~t~~~a~~ 359 (424)
T 3gri_A 308 ARDEKA---QPMEKAPFGIVGSETAFPLLYTHFVKNGDWTLQQLVDYLTIKPCET 359 (424)
T ss_dssp CHHHHT---SCTTTSCCCCCCTTTHHHHHHHHHTTTSSCCHHHHHHHHTHHHHHH
T ss_pred CHHHcc---CCHhHCCCCCccccccHHHHHHHHHHcCCCCHHHHHHHHhHHHHHH
Confidence 998885 4899999999999999999998888889999999999999999985
|
| >2vm8_A Dihydropyrimidinase-related protein 2; neurogenesis, phosphoprotein, differentiation, CRMP, cytoplasm, TIM barrel, polymorphism, axonal pathfinding; 1.9A {Homo sapiens} PDB: 2gse_A 1kcx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-46 Score=381.62 Aligned_cols=375 Identities=45% Similarity=0.779 Sum_probs=306.9
Q ss_pred CccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHHHH
Q 014320 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~ 131 (427)
+.+++|+|++|++++...+++|+|+||||++||+..+.+.+.++||++|++|+|||||+|+|+..+..+..++++++..+
T Consensus 25 ~~~~li~n~~v~~~~~~~~~~V~I~~grI~~Ig~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~e~~~~~~ 104 (501)
T 2vm8_A 25 SDRLLIKGGKIVNDDQSFYADIYMEDGLIKQIGENLIVPGGVKTIEAHSRMVIPGGIDVHTRFQMPDQGMTSADDFFQGT 104 (501)
T ss_dssp CCCEEEEEEEEECSSCEEEEEEEEETTEEEEEESSCCCCSSSCEEECTTCEEEECEEEEEECTTCEETTEECSSCHHHHH
T ss_pred cCCEEEEeeEEECCCCceEeeEEEECCEEEEeccCCCCCCCCeEEECCCCEEeeCEEEeeecccccccCCCcHHHHHHHH
Confidence 35789999999998776679999999999999986443345689999999999999999999987643334577888889
Q ss_pred HHHHcCCceEEecCcCCCC-CcHHHHHHHHHHHhcc-ccceeceeccccCCChhhHHHHHHHHHHcCCCeEEEEEecCCC
Q 014320 132 AAALAGGTTMHIDFVIPIN-GSLTAGFEAYEKKAKN-SCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGS 209 (427)
Q Consensus 132 ~~~l~~GvTtv~d~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~~~~~ 209 (427)
+.++++||||++|+..+.+ ....+.++...+.+.+ ...+++++........+..++++++.++.|+..+|+++.+...
T Consensus 105 ~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~l~~~~G~~~i~~~~~~~~~ 184 (501)
T 2vm8_A 105 KAALAGGTTMIIDHVVPEPGTSLLAAFDQWREWADSKSCCDYSLHVDISEWHKGIQEEMEALVKDHGVNSFLVYMAFKDR 184 (501)
T ss_dssp HHHHHTTEEEEEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEEEECCSCSHHHHHHHHHHHHHSCCCEEEEESSSTTT
T ss_pred HHHHhCCcEEEEeCCCCCCCCChHHHHHHHHHHHhcCCeeEEEEEEEecCCCcccHHHHHHHHHhCCceEEEEeeccCCC
Confidence 9999999999999864432 2445556655554433 4556666544333344456677777755799999999887665
Q ss_pred ccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEE
Q 014320 210 FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV 289 (427)
Q Consensus 210 ~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~ 289 (427)
...+.++++++++.|+++|+++.+|+++...+....+.+.+.|+....+|...+|...+..++.+.+.++...++++|++
T Consensus 185 ~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~g~~~hi~ 264 (501)
T 2vm8_A 185 FQLTDCQIYEVLSVIRDIGAIAQVHAENGDIIAEEQQRILDLGITGPEGHVLSRPEEVEAEAVNRAITIANQTNCPLYIT 264 (501)
T ss_dssp TBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHTTTCCSTHHHHHHSCHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCCHHHHHHHHHHHHHhCCEEEEEccChHHHHHHHHHHHhcCCCChhhccccCCHHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 67899999999999999999999999987766667777889999988899889999999899999999999999999999
Q ss_pred cCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCc-ccHHHHHHHHhcCCceEEecCC
Q 014320 290 HVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRAS-GHNKALQAALATGILQLVGTDH 368 (427)
Q Consensus 290 H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~-~~~~~l~~~l~~G~~~~lgSD~ 368 (427)
|++....++.++.+++.|+.++++++|++++++...+....+..+..++++||+|.. .+++.+|+++++|+++++||||
T Consensus 265 h~~~~~~~~~i~~~~~~G~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~pp~r~~~~~~~~l~~~l~~G~~~~~gtD~ 344 (501)
T 2vm8_A 265 KVMSKSSAEVIAQARKKGTVVYGEPITASLGTDGSHYWSKNWAKAAAFVTSPPLSPDPTTPDFLNSLLSCGDLQVTGSAH 344 (501)
T ss_dssp EECCHHHHHHHHHHHHTTCCEEEEEBHHHHHCCGGGGGCSSHHHHHHTCCSSCCCSCTTHHHHHHHHHHHTSSCCCBCCB
T ss_pred eCCcHHHHHHHHHHHhCCCcEEEEEChhHhhcChhhhcccccccCceEEECCCCCCCcchHHHHHHHHhcCceEEEEecC
Confidence 999998889999999999999999999999988766532222112346678999986 5789999999999999999999
Q ss_pred CCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 369 CAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 369 ~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
.|++...+..+.++|...+.|++|.+++++.++..++..++++++++++++|.|||++
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~~~l~~~T~~~A~~ 402 (501)
T 2vm8_A 345 CTFNTAQKAVGKDNFTLIPEGTNGTEERMSVIWDKAVVTGKMDENQFVAVTSTNAAKV 402 (501)
T ss_dssp CCCCHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTTTSSCHHHHHHHHTHHHHHH
T ss_pred CCCChhhhhcccCChhhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHhHhHHHH
Confidence 9998877765556788889999999999999886666677899999999999999984
|
| >3mpg_A Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-48 Score=382.77 Aligned_cols=355 Identities=25% Similarity=0.366 Sum_probs=283.2
Q ss_pred cEEEECcEEEcCCC-ceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHHHHH
Q 014320 54 KILIKGGTVVNAHH-QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA 132 (427)
Q Consensus 54 ~~~i~~~~i~~~~~-~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~ 132 (427)
+++|+|++|++..+ ..+++|+|+||||++|++..+ +++.++||++|++|+|||||+|+|+..+ +..+.+++...++
T Consensus 2 ~~~i~~~~v~~~~~~~~~~~v~i~~g~I~~i~~~~~-~~~~~~id~~g~~v~PG~iD~H~H~~~~--~~~~~~~~~~~~~ 78 (428)
T 3mpg_A 2 NYLFKNGRYMNEEGKIVATDLLVQDGKIAKVAENIT-ADNAEVIDVNGKLIAPGLVDVHVHLREP--GGEHKETIETGTL 78 (428)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEESSBEEECCSSCC-CTTSEEEECTTCEEEECEEEEEECCCTT--TCTTTCCHHHHHH
T ss_pred cEEEEeeEEEeCCCCeeeeeEEEECCEEEEecCCCC-CCCCeEEECCCCEEeeCEEEEeeccCCC--CCCchhHHHHHHH
Confidence 57999999997544 568899999999999998654 3467899999999999999999999877 6677888989999
Q ss_pred HHHcCCceEEecCcCCCCC-cHHHHHHHHHHHhc-cccceeceeccccC-CChhhHHHHHHHHHHcCCCeEEEEEecCCC
Q 014320 133 AALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITK-WDEVVSDEMEVMVKEKGINSFKFFMAYKGS 209 (427)
Q Consensus 133 ~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~g~~~ik~~~~~~~~ 209 (427)
.++++|||+++++....+. ...+.++...+... ....++..++.... ...+.+.++.++. ..|+..+ .+++.
T Consensus 79 ~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~-~~G~~~~----~~~~~ 153 (428)
T 3mpg_A 79 AAAKGGFTTICAMPNTRPVPDCREHMEDLQNRIKEKAHVNVLPYGAITVRQAGSEMTDFETLK-ELGAFAF----TDDGV 153 (428)
T ss_dssp HHHHHTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEEEECEESBGGGCSSSBCCHHHHH-HTTCCCE----ECTTS
T ss_pred HHHhCCeEEEEeCCCCCCCCCcHHHHHHHHHHhcccCCcEEEEEeeEecCCCcchHHHHHHHH-HhCCEEE----ECCCc
Confidence 9999999999998654332 33344444333332 23334433322221 1122334466666 5677665 45566
Q ss_pred ccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEE
Q 014320 210 FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV 289 (427)
Q Consensus 210 ~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~ 289 (427)
+..+++.++++++.|+++|+++.+|+++...+... ....|....+.+...+|...|..++.+.+.+++..+++++++
T Consensus 154 ~~~~~~~l~~~~~~a~~~g~~v~vH~~~~~~~~~~---~~~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~g~~~~i~ 230 (428)
T 3mpg_A 154 GVQDASMMLAAMKRAAKLNMAVVAHCEENTLINKG---CVHEGKFSEKHGLNGIPSVCESVHIARDILLAEAADCHYHVC 230 (428)
T ss_dssp CCCCHHHHHHHHHHHHHTTCCEEECCCCGGGCTTC---SEETTHHHHHTTCCEECTHHHHHHHHHHHHHHHHHTCCEEEC
T ss_pred CCCCHHHHHHHHHHHHhcCCeEEEECCChhHhhhH---HhhcCccchhhCcCCCCHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 67899999999999999999999999886543210 001111122344566999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCC
Q 014320 290 HVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHC 369 (427)
Q Consensus 290 H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~ 369 (427)
|+++.++++.+++++++|+++++++||||++++++.+.. .+..++++||+|.+.++++||+++++|.+++++|||+
T Consensus 231 H~s~~~~~~~i~~a~~~G~~v~~e~~p~~l~l~~~~~~~----~~~~~~~~Pplr~~~~~~~l~~~l~~G~i~~i~tDh~ 306 (428)
T 3mpg_A 231 HVSTKGSVRVIRDAKRAGIKVTAEVTPHHLVLCEDDIPS----ADPNFKMNPPLRGKEDHEALIEGLLDGTIDMIATDHA 306 (428)
T ss_dssp SCCCHHHHHHHHHHHHTTCCEEECBCHHHHHCCGGGCCS----SCGGGCCSSCCCCHHHHHHHHHHHHHTSSCCBCCCBC
T ss_pred eCCCHHHHHHHHHHHhcCCCEEEEEchHHhEECHHHHhC----CCCeEEEeCCCCCHHHHHHHHHHHhCCCCcEEEcCCC
Confidence 999999999999999999999999999999999888752 2368899999999999999999999999999999999
Q ss_pred CCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 370 AFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 370 p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
|++...|.. +|+.++.|++|+++++|.++..++..++++++++++++|.|||++
T Consensus 307 p~~~~~k~~---~~~~~p~g~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~t~~~a~~ 360 (428)
T 3mpg_A 307 PHTAEEKAQ---GIERAPFGITGFETAFPLLYTNLVKKGIITLEQLIQFLTEKPADT 360 (428)
T ss_dssp CCCTTGGGS---CTTTSCSCCCCTTTHHHHHHHHTTTTTSSCHHHHHHTTTHHHHHH
T ss_pred CCCHHHccc---CHhhCCCCceehhhHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHH
Confidence 999888854 799999999999999999998778888999999999999999984
|
| >1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia pickettii} SCOP: b.92.1.3 c.1.9.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-45 Score=364.67 Aligned_cols=368 Identities=39% Similarity=0.654 Sum_probs=299.3
Q ss_pred cEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHHHHHH
Q 014320 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAA 133 (427)
Q Consensus 54 ~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~~ 133 (427)
+++|+|++|++++...+++|+|+||||++|++..+ ++.++||++|++|+|||||+|+|+.+......++++++..++.
T Consensus 2 ~~li~n~~v~~~~~~~~~~v~I~~g~I~~ig~~~~--~~~~viD~~G~~v~PGlID~H~H~~~~~~~~~~~e~~~~~~~~ 79 (457)
T 1nfg_A 2 DIIIKNGTIVTADGISRADLGIKDGKITQIGGALG--PAERTIDAAGRYVFPGGIDVHTHVETVSFNTQSADTFATATVA 79 (457)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEETTEEEEESSCCC--CCSEEEECTTCEEEECEEEEEECCSCEETTEECSCCHHHHHHH
T ss_pred cEEEEeeEEEeCCCceeeeEEEECCEEEEecCCCC--CCCeEEeCCCCEEccceEeeccccccCcCCCCChhhHHHHHHH
Confidence 57999999999877678899999999999987532 3468999999999999999999997432111256788888899
Q ss_pred HHcCCceEEecCcCCCC-CcHHHHHHHHHHHhc-cccceeceeccccCCChhhHHHHHHHHHHcCCCeEEEEEecCCCcc
Q 014320 134 ALAGGTTMHIDFVIPIN-GSLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM 211 (427)
Q Consensus 134 ~l~~GvTtv~d~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~ 211 (427)
++++||||++|+....+ ....+.++...+... +..++++++......+.+..++++++. +.|+..+|+++++.....
T Consensus 80 ~~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~~~k~~~~~~~~~~ 158 (457)
T 1nfg_A 80 AACGGTTTIVDFCQQDRGHSLAEAVAKWDGMAGGKSAIDYGYHIIVLDPTDSVIEELEVLP-DLGITSFKVFMAYRGMNM 158 (457)
T ss_dssp HHHTTEEEEEEEEECCTTSCHHHHHHHHHHHHTTTCSSEEEEEEECSSCCHHHHHHTTTGG-GGTCCEEEEESSSTTTTB
T ss_pred HHhCCcEEEEeCCCCCCCCChHHHHHHHHHHhcccCccCEEEEEeecCCchhHHHHHHHHH-HcCCCEEEEeeccCCCCC
Confidence 99999999999864322 245666666555543 355667776655444554455566655 689999999988654345
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcC
Q 014320 212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (427)
Q Consensus 212 ~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~ 291 (427)
.+.+++.++++.+++.++++.+|+++...+....+.+.+.|......|...+|...+.+.+.+.++++++.|++++++|+
T Consensus 159 ~~~~~~~~~~~~a~~~~~~v~~H~e~~~~~~~~~~~~~~~g~~~~~~h~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~H~ 238 (457)
T 1nfg_A 159 IDDVTLLKTLDKAVKTGSLVMVHAENGDAADYLRDKFVAEGKTAPIYHALSRPPRVEAEATARALALAEIVNAPIYIVHV 238 (457)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHHTTCCSTHHHHHTSCHHHHHHHHHHHHHHHHHHTCCEEECCC
T ss_pred CCHHHHHHHHHHHHhcCCEEEEeCCCHHHHHHHHHHHHhcCCcchhhccccCCHHHHHHHHHHHHHHHHHHCCCEEEEeC
Confidence 67889999999999999999999999887777777778889877777888899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCC
Q 014320 292 MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAF 371 (427)
Q Consensus 292 ~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~ 371 (427)
++...++.++.+++.|++++++++||+++++++.+....+ .+..++++||+|...++..+|+++++|+++++||||.|+
T Consensus 239 ~~~~~~~~~~~~~~~G~~v~~~~~~h~~~~~~~~~~~~~~-~~~~~~~~p~~r~~~~~~~~~~~~~~G~~~~~gtD~~~~ 317 (457)
T 1nfg_A 239 TCEESLEEVMRAKSRGVRALAETCTHYLYLTKEDLERPDF-EGAKYVFTPPARAKKDHDVLWNALRNGVFETVSSDHCSW 317 (457)
T ss_dssp CSHHHHHHHHHHHHHTCCEEECEEGGGGTCCGGGGGCTTT-GGGGGCCSSCCCCHHHHHHHHHHHHTTCCSCEECCBCCC
T ss_pred CcHHHHHHHHHHHHcCCeEEEEEchHHhEeCHHHhccccc-cCceeEEcCCCCCHHHHHHHHHHHhCCCeEEEecCCCCC
Confidence 9888788999988999999999999999998877643221 235677899999988999999999999999999999998
Q ss_pred Chh-hhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 372 NST-QKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 372 ~~~-~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
+.. .|..+.++|+.++.|++|.+++++.++ .++..+++|++++++++|.||||+
T Consensus 318 ~~~~~k~~~~~~~~~~~~g~~g~e~~~~~~~-~~~~~~~l~~~~~l~~~T~~~A~~ 372 (457)
T 1nfg_A 318 LFKGHKDRGRNDFRAIPNGAPGVEERLMMVY-QGVNEGRISLTQFVELVATRPAKV 372 (457)
T ss_dssp CTTTTTTTTTTCGGGSCCCBCCTTTHHHHHH-HHHHTTSSCHHHHHHHHTHHHHHH
T ss_pred ChHHhhhcccCCHhHCCCCcccHHHHHHHHH-HHHHcCCCCHHHHHHHHhhhHHHH
Confidence 765 443333588999999999999999888 677777899999999999999984
|
| >1gkr_A Hydantoinase, non-ATP dependent L-selective hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX; 2.60A {Arthrobacter aurescens} SCOP: b.92.1.3 c.1.9.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-45 Score=365.22 Aligned_cols=363 Identities=26% Similarity=0.326 Sum_probs=293.7
Q ss_pred ccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCC-CCChhhHHHHH
Q 014320 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG-SETIDDFFSGQ 131 (427)
Q Consensus 53 ~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g-~~~~e~~~~~~ 131 (427)
.+++|+|++|++++...+++|+|+||||++|++....+.+.++||++|++|+|||||+|+|+..+ + ..+++++...+
T Consensus 2 ~~~li~~~~v~~~~~~~~~~v~I~~g~I~~ig~~~~~~~~~~viD~~g~~v~PGlID~H~H~~~~--~~~~~~~~~~~~~ 79 (458)
T 1gkr_A 2 FDVIVKNCRLVSSDGITEADILVKDGKVAAISADTSDVEASRTIDAGGKFVMPGVVDEHVHIIDM--DLKNRYGRFELDS 79 (458)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEETTEEEEEESCCTTCCEEEEEECTTCEEEECEEEEEEECCCG--GGTTTSCCHHHHH
T ss_pred ceEEEECcEEECCCCceeeeEEEECCEEEEecCCCCCCCCCeEEeCCCCEEecCEEEeeecccCC--CCCCchhHHHHHH
Confidence 46899999999987667889999999999999764323346799999999999999999999875 3 34567777888
Q ss_pred HHHHcCCceEEecCc-CCCC-CcHHHHHHHHHHHhc-cccceeceeccccCCChhhHHHHHHHHHHcCCCeEEEEEecCC
Q 014320 132 AAALAGGTTMHIDFV-IPIN-GSLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKG 208 (427)
Q Consensus 132 ~~~l~~GvTtv~d~~-~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~~~~ 208 (427)
+.++++||||++|+. ...+ ....+.++...+... .. ++++++.+... +..++++++. +.|+..+|++++++.
T Consensus 80 ~~~~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~-~~g~~~i~~~~~~~~ 154 (458)
T 1gkr_A 80 ESAAVGGITTIIEMPITFPPTTTLDAFLEKKKQAGQRLK-VDFALYGGGVP---GNLPEIRKMH-DAGAVGFKSMMAASV 154 (458)
T ss_dssp HHHHHHTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCS-SEEEEEEECCT---TCHHHHHHHH-HTTCCEEEEESSCSB
T ss_pred HHHHcCCEEEEEeCCCCCCCCCCcHHHHHHHHHHhhhCc-eeEEEEeccCC---CCHHHHHHHH-HcCCcEEEEeecccC
Confidence 899999999999986 3322 233444544433332 23 55555443221 2355677777 579999999988763
Q ss_pred ---CccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCC
Q 014320 209 ---SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP 285 (427)
Q Consensus 209 ---~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~ 285 (427)
.+..+.+.++++++.|+++|+++++|+++...+....+.+.+.|...+..|...+|...+..++.+.+.++.+.+++
T Consensus 155 ~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~G~~~~~~h~~~~~~~~~~~~~~~~~~la~~~g~~ 234 (458)
T 1gkr_A 155 PGMFDAVSDGELFEIFQEIAACGSVIVVHAENETIIQALQKQIKAAGGKDMAAYEASQPVFQENEAIQRALLLQKEAGCR 234 (458)
T ss_dssp TTTBCBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHHTTCCSHHHHHHHSCHHHHHHHHHHHHHHHHHHCCE
T ss_pred CCCcccCCHHHHHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHhhcCccchhhccccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 35679999999999999999999999998777766666777889877777887889888899999999999999999
Q ss_pred EEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEe
Q 014320 286 LYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVG 365 (427)
Q Consensus 286 ~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lg 365 (427)
+|++|+++...++.++.+++.|+++++++||++++++++.+.. .+..++++||+|...+++.+|+++++|+++++|
T Consensus 235 ~h~~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~~~~~~~~~~~----~~~~~~~~pp~r~~~~~~~l~~~~~~G~~~~lg 310 (458)
T 1gkr_A 235 LIVLHVSNPDGVELIHQAQSEGQDVHCESGPQYLNITTDDAER----IGPYMKVAPPVRSAEMNIRLWEQLENGLIDTLG 310 (458)
T ss_dssp EEECCCCSHHHHHHHHHHHHTTCCEEEEECHHHHSCCGGGHHH----HGGGGCCSSCCCCHHHHHHHHHHHHHTCCCEEC
T ss_pred EEEEeCCCHHHHHHHHHHHHCCCcEEEEEchHHheeCHHHhhc----cCceEEEcCCCCCHHHHHHHHHHHhCCCceEEE
Confidence 9999999877788898888899999999999999888766531 124667899999999999999999999999999
Q ss_pred cCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 366 TDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 366 SD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
|||.|++...|..+..+++..+.|++|.+++++.++..+++.+++|++++++++|.|||++
T Consensus 311 tD~~~~~~~~k~~g~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~l~~~~al~~~T~~~A~~ 371 (458)
T 1gkr_A 311 SDHGGHPVEDKEPGWKDVWKAGNGALGLETSLPMMLTNGVNKGRLSLERLVEVMCEKPAKL 371 (458)
T ss_dssp CCEECCCGGGTGGGGTCGGGSCCCBCCTTTHHHHHHHHTGGGTSSCHHHHHHHHTHHHHHH
T ss_pred eCCCCCChHHhccccCCHhHCCCCcccHHHHHHHHHHHHHHhCCCCHHHHHHHHhhhHHHH
Confidence 9999998776643334888899999999999999886677777899999999999999974
|
| >2z00_A Dihydroorotase; zinc binding protein, hydrolase, metal-binding, pyrimidine biosynthesis, structural genomics, NPPSFA; 2.42A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-42 Score=339.02 Aligned_cols=351 Identities=25% Similarity=0.347 Sum_probs=264.7
Q ss_pred EEEECcEEEcCCC-ceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHHHHHH
Q 014320 55 ILIKGGTVVNAHH-QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAA 133 (427)
Q Consensus 55 ~~i~~~~i~~~~~-~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~~ 133 (427)
++|+|++|+++.+ ..+++|+|+||||++|++. ++.++||++|++|+|||||+|+|+..+ +..+.+++...++.
T Consensus 2 ~~i~~~~v~~~~~~~~~~~v~i~~g~I~~i~~~----~~~~~id~~g~~v~PG~iD~H~H~~~~--~~~~~~~~~~~~~~ 75 (426)
T 2z00_A 2 ILIRNVRLVDARGERGPADVLIGEGRILSLEGG----EAKQVVDGTGCFLAPGFLDLHAHLREP--GEEVKEDLFSGLLA 75 (426)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEETTEEEESBCC----CCSEEEECTTCEEEECEEEEEECCCTT--TCTTTCCHHHHHHH
T ss_pred EEEEeeEEECCCCceecceEEEECCEEEEEecC----CCceEEeCCCCEEecCEEEeccccCCC--CCCchHHHHHHHHH
Confidence 6899999999775 4678999999999999874 245799999999999999999999876 54456778888899
Q ss_pred HHcCCceEEecCcCCCCC-cHHHHHHHHHHHhcc-ccceeceecccc-CCChhhHHHHHHHHHHcCCCeEEEEEecCCCc
Q 014320 134 ALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN-SCMDYGFHMAIT-KWDEVVSDEMEVMVKEKGINSFKFFMAYKGSF 210 (427)
Q Consensus 134 ~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~g~~~ik~~~~~~~~~ 210 (427)
++++||||++|+...... ...+.++...+.... ..+++...+... ...++.+++++++. +.|+..++ .++.+
T Consensus 76 ~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~i~----~~~~~ 150 (426)
T 2z00_A 76 AVRGGYTDLVSMPNTKPPVDTPEAVRALKEKAKALGLARLHPAAALTEKQEGKTLTPAGLLR-EAGAVLLT----DDGRT 150 (426)
T ss_dssp HHHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHTSSEECCEECSBGGGCSSSBCCHHHHH-HHTCCEEE----CTTSC
T ss_pred HHhCCccEEEecCCCCCCcChHHHHHHHHHHhcccCcccEEEEEEeecCCChhhHHHHHHHH-HcCCEEEE----CCCcC
Confidence 999999999998643221 222333333333222 113332222111 11112234556666 45776664 34456
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHh------cCC
Q 014320 211 MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEF------VNT 284 (427)
Q Consensus 211 ~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~------~g~ 284 (427)
..+++.++++++.|+++|+++.+|+++........ .+.|......+...+|...|..++.+.+++++. .+.
T Consensus 151 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~---~~~g~~~~~~g~~~~~~~~e~~~~~~~~~~a~~~~~~~~~g~ 227 (426)
T 2z00_A 151 NEDAGVLAAGLLMAAPLGLPVAVHAEDAGLRRNGV---MNDGPLADLLGLPGNPPEAEAARIARDLEVLRYALRRSPATP 227 (426)
T ss_dssp CCCHHHHHHHHHHHGGGTCCEEECCCCHHHHTTCS---EECSHHHHHHTCCEECHHHHHHHHHHHHHHHHHHHHHCSSCC
T ss_pred CCCHHHHHHHHHHHHhhCCEEEEeCCCHHHHhhhh---hccCccchhcccccCChHHHHHHHHHHHHHHhhccccccCCC
Confidence 67999999999999999999999998765432100 000100111223347888888888888888888 899
Q ss_pred CEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEE
Q 014320 285 PLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLV 364 (427)
Q Consensus 285 ~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~l 364 (427)
+++++|+++.+.++.++++++.|+.|++++||++++++.+.+.. .+..++++||+|++.+++.||+++++|+++++
T Consensus 228 ~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~~~~~~~~~~~----~~~~~~~~~plr~~~~~~~l~~~l~~G~~~~l 303 (426)
T 2z00_A 228 RLHVQHLSTKRGLELVREAKRAGLPVTAEATPHHLTLTEEALRT----FDPLFKVAPPLRGEEDREALLEGLLDGTLDAI 303 (426)
T ss_dssp CEEETTCCCHHHHHHHHHHHHTTCCEEEEECHHHHHCCGGGGGG----CCGGGCCSSCCCCHHHHHHHHHHHHHTSSCEE
T ss_pred cEEEEeCCCHHHHHHHHHHHHcCCCEEEEEchHHhEeCHhHhhc----cCceEEEeCCCCCHHHHHHHHHHHhCCCcEEE
Confidence 99999999988889999999999999999999999888765531 13466789999999999999999999999999
Q ss_pred ecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 365 GTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 365 gSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
||||+|++...|. ++|+.++.|+++.+++++.++..++..+++|++++++++|.|||++
T Consensus 304 gsD~~p~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ls~~~~l~~~T~n~A~~ 362 (426)
T 2z00_A 304 ATDHAPHTLAEKE---KDLLRAPFGIPSLEVAFPLLYTELHLKRGFPLQRLVELFTDGPRRV 362 (426)
T ss_dssp CCCBCCCCTTGGG---SCTTTSCCCBCCTTTHHHHHHHHTHHHHCCCHHHHHHHHTHHHHHH
T ss_pred ecCCCCCCHHHcc---CChhhCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhHHHH
Confidence 9999999877664 4889999999999999999886667777899999999999999974
|
| >2gwn_A Dihydroorotase; zinc-binding prote structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; HET: KCX GOL; 1.85A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=339.98 Aligned_cols=355 Identities=19% Similarity=0.271 Sum_probs=275.5
Q ss_pred ccEEEECcEEEcCCCceeeeEEEeCCeEEEeeC-CCCC---CCCceEEeCCCCEEeccccccccccccCcCCCCChhhHH
Q 014320 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQP-NINV---GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFF 128 (427)
Q Consensus 53 ~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~-~~~~---~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~ 128 (427)
++++|+|++|++++...+++|+|+||||++|++ .... +.+.++||++|++|+|||||+|+|+..+ +..++++++
T Consensus 4 m~~li~~~~v~~~~~~~~~~v~i~~g~I~~i~~~~~~~~~~~~~~~viD~~g~~v~PGlID~H~H~~~~--~~~~~e~~~ 81 (452)
T 2gwn_A 4 MKILLRNALITNEGKTFPGSVMIDGAFISRIIEGELPADDNLSADEVIECSGLRLFPGCIDDQVHFREP--GLTHKATIA 81 (452)
T ss_dssp SEEEEEEEEEEETTEEEEEEEEEETTEEEEEEESCCCTTCCTTCSEEEECTTCEEEECEEEEEECCCTT--TCTTTCCHH
T ss_pred ccEEEECeEEECCCceeeeeEEEECCEEEEEecCCCccccCCCCCeEEeCCCCEEecCEEeeccccCCC--CCCcHHHHH
Confidence 468999999999876678899999999999987 4332 2346899999999999999999999876 556778888
Q ss_pred HHHHHHHcCCceEEecCcCCCCC-cHHHHHHHHHHHh-ccccceeceeccccCCChhhHHHHHHHHHHcCCCeEEEEEec
Q 014320 129 SGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY 206 (427)
Q Consensus 129 ~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~~ 206 (427)
..++.++++||||++|+....+. ...+.++...+.. .+..++++++....... .+++.++. ..|..++|.++++
T Consensus 82 ~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~-~~g~~g~k~~~~~ 157 (452)
T 2gwn_A 82 SESRAAVAGGVTSFMDMPNTNPPTTMWERLLEKRQIGADTAWANYGFFFGGTNDN---IDEIKRVD-KHLVPGLKLFLGS 157 (452)
T ss_dssp HHHHHHHHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEEEECEECCSSC---HHHHHTCC-TTSCSCEEEESSS
T ss_pred HHHHHHHhCCeEEEEcCCCCCCCCChHHHHHHHHHHhhccCcccEEEEEeecCCC---HHHHHHHH-HcCCCEEEEEecc
Confidence 88999999999999998754322 3344444443333 33667777665544332 33455444 4578899999875
Q ss_pred CC--CccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHH-HHcCC-CCcccccccCCHHHHHHHHHHHHHHHHhc
Q 014320 207 KG--SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRM-IELGI-TGPEGHALSRPPLLEGEATTRAIRLAEFV 282 (427)
Q Consensus 207 ~~--~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l-~~~G~-~~~~~~~~~~p~~~e~~a~~~~~~~~~~~ 282 (427)
.. .+..+.+.+++.++. .+.++.+|+++...+......+ ...|. ..+..|...+|..++.+.+.+.++++++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~---~~~~~~~h~~~~~~~~~~~~~~~~~~G~~~~~~~h~~~~~~~~~~~~l~~~~~la~~~ 234 (452)
T 2gwn_A 158 STGNMLVDNKETLEKIFGE---CDLLIATHCEKEEIIRANKEHYKAKYGNDLDIHFHPLIRSEEACYRSSAEAVELAERM 234 (452)
T ss_dssp CCGGGBCCCHHHHHHHHHH---CCSCEEEECCCHHHHHHHHHHHHHHHCSCCCGGGHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccCCHHHHHHHHHH---cCCEEEEcCCCHHHHHhHHhhhhhhcCcccchhhccccCChHHHHHHHHHHHHHHHHh
Confidence 32 122356777766554 4888999999876665544443 45564 56777878899999999999999999999
Q ss_pred CCCEEEEcCCCHHHHHHHHH---HhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcC
Q 014320 283 NTPLYVVHVMSMDAMEEIAK---ARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATG 359 (427)
Q Consensus 283 g~~~~i~H~~~~~~~~~i~~---~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G 359 (427)
|++++++|+++.+.++.+++ +++. +|+++++||+++++++++.. .+..++++||+|...++..+|+++++|
T Consensus 235 g~~v~i~H~~~~~~~~~~~~~~a~~~~--~v~~~~~~h~~~l~~~~~~~----~g~~~~~~P~lr~~~~~~~l~~~l~~G 308 (452)
T 2gwn_A 235 NARLHILHLSTEKELSLFRNDIPTAQK--RITSEVCVHHLWFSDTDYGR----LGNRIKWNPAIKKESDREALRAAVRNG 308 (452)
T ss_dssp TCCEEECCCCCTGGGGGSCCSSCGGGC--SEEEEEEHHHHHCCGGGHHH----HGGGGCCSSCCCCHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCHHHHHHHHHhhcccCC--CeEEEEchHHhhcCHHHHhc----cCceEEECCCCCCHHHHHHHHHHHHCC
Confidence 99999999997666666655 2433 68999999999999877632 235777899999998999999999999
Q ss_pred CceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 360 ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 360 ~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
+++++||||.|++...|. .+|+.+++|+++++++++.++. .+..++++++++++++|.|||++
T Consensus 309 v~~~lgTD~~~~~~~~k~---~~~~~~~~g~~~~e~~~~~~~~-~~~~~~ls~~~~l~~~T~~~A~~ 371 (452)
T 2gwn_A 309 RIDIIATDHAPHLLREKE---GSCLQAASGGPLVQHSLLALLE-LCNQGIFSIEEIVSKTAHIPATL 371 (452)
T ss_dssp SSCEEECCBCCCCHHHHC---SCTTTSCCCCCCTTTHHHHHHH-HHHTTSSCHHHHHHHHTHHHHHH
T ss_pred CceEEEeCCCCCChHHhc---CChhhCCCCCccHHHHHHHHHH-HHHcCCCCHHHHHHHHhHhHHHH
Confidence 999999999999877663 3899999999999999998885 56677899999999999999984
|
| >3pnu_A Dihydroorotase; TIM barrel, zinc binding, hydrolase, structu genomics, center for structural genomics of infectious DISE csgid; HET: KCX; 2.40A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-42 Score=330.01 Aligned_cols=279 Identities=14% Similarity=0.130 Sum_probs=218.6
Q ss_pred CCCEEeccccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCC-cHHHHHHHHHHHhc-ccc-ceeceec
Q 014320 99 TGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSC-MDYGFHM 175 (427)
Q Consensus 99 ~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~-~~~~~~~ 175 (427)
.|++|+||+||+|+|+.+ |. ..+...+++++|+|+++||.+..+. ...+.++.+++... ... +++.+++
T Consensus 22 ~~~~vlPG~ID~HvHlre---G~-----~~~e~~aA~aGG~Ttvi~mPnt~P~~~~~~~~~~~~~~a~~~~~~vd~~~~~ 93 (359)
T 3pnu_A 22 SNAMKLKNPLDMHLHLRD---NQ-----MLELIAPLSARDFCAAVIMPNLIPPLCNLEDLKAYKMRILKACKDENFTPLM 93 (359)
T ss_dssp SCCEEEESCEEEEECCCS---HH-----HHHHHHHHHHTTCSEEEECCCCSSCCCSHHHHHHHHHHHHHHHTTSCCEEEE
T ss_pred CCcEEccCcEEccccCCC---CC-----cchhHHHHHhCCCcEEEECCCCCCCCCcHHHHHHHHHHHhccCCCceEEEee
Confidence 579999999999999976 22 2334558899999999999865443 55666666665543 355 7888877
Q ss_pred c--ccCCChhhHHHHHHHHHHcCCCeEEEEEecC------CCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHH
Q 014320 176 A--ITKWDEVVSDEMEVMVKEKGINSFKFFMAYK------GSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKR 247 (427)
Q Consensus 176 ~--~~~~~~~~~~~~~~l~~~~g~~~ik~~~~~~------~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~ 247 (427)
. .+.. ..+++.++. .. +.++|+|+.+. +....+.+.++++++.+++.|+++.+|+|+.+.+.
T Consensus 94 ~l~lt~~---~~~el~~l~-~~-v~~~Kl~~aga~~~s~~~~~~~~~~~l~~~l~~~~~~g~~v~vHaEd~~~i~----- 163 (359)
T 3pnu_A 94 TLFFKNY---DEKFLYSAK-DE-IFGIKLYPAGITTNSNGGVSSFDIEYLKPTLEAMSDLNIPLLVHGETNDFVM----- 163 (359)
T ss_dssp EEECSCC---CHHHHHHHT-TT-CSEEEECBTTSSSSCTTSBCCCCHHHHHHHHHHHHHTTCCEEECCCCSSCGG-----
T ss_pred eeEecCC---CHHHHHHHH-Hh-hhehhheeCCCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEecCCchHhH-----
Confidence 6 5532 245666665 45 77999998641 22234889999999999999999999999876431
Q ss_pred HHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhc-CCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccc
Q 014320 248 MIELGITGPEGHALSRPPLLEGEATTRAIRLAEFV-NTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWL 326 (427)
Q Consensus 248 l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~-g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~ 326 (427)
..|..++.+++.++++. |+|+|++|+++.++++.|+++ ++|++|+|||||+++++++
T Consensus 164 ------------------~~E~~ai~r~~~la~~~~g~~lhi~HvSt~~~v~~I~~A----~~VtaEv~phhL~lt~~~~ 221 (359)
T 3pnu_A 164 ------------------DRESNFAKIYEKLAKHFPRLKIVMEHITTKTLCELLKDY----ENLYATITLHHLIITLDDV 221 (359)
T ss_dssp ------------------GTTGGGHHHHHHHHHHCTTSCEEECSCCSHHHHHHHHHC----TTEEEEECSGGGTCCHHHH
T ss_pred ------------------HHHHHHHHHHHHHHHHcCCCcEEEEecCcHHHHHHHHhc----CCceEEEechhhEEcHHHh
Confidence 12456778888898864 999999999999999999887 7899999999999999887
Q ss_pred cCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCce-EEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHH
Q 014320 327 WHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQ-LVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV 405 (427)
Q Consensus 327 ~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~-~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~ 405 (427)
...++ +..++++||||++.||++||+++++|.++ +|+|||+||+.++|.. + ..++|+.++++.||++++ .+
T Consensus 222 ~~~~~--~~~~k~~PPLR~~~dr~aL~~al~dG~id~~iaTDHaPh~~~eK~~---~--~g~~Gi~~~~~~L~l~~~-~~ 293 (359)
T 3pnu_A 222 IGGKM--NPHLFCKPIAKRYEDKEALCELAFSGYEKVMFGSDSAPHPKDTKEC---C--GCAAGVFSAPVILPVLAE-LF 293 (359)
T ss_dssp HTSSC--CGGGCCSSCCCCHHHHHHHHHHHHTTCTTEEECCCBCCCBC-----------CCCSCBCCGGGHHHHHHH-HH
T ss_pred cCcCC--CCceEEcCCCCCHHHHHHHHHHHhcCCCCEEEecCCCCCCHHHhCC---C--CCCCChhhHHHHHHHHHH-HH
Confidence 53222 36899999999999999999999999999 7999999999988842 3 357899999999999985 55
Q ss_pred hcCCCCHHHHHHHHchhhhcC
Q 014320 406 ESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 406 ~~~~l~l~~~v~~~t~npA~~ 426 (427)
. ++++++++++++|.||||+
T Consensus 294 ~-~~~~l~~lv~~~s~nPAki 313 (359)
T 3pnu_A 294 K-QNSSEENLQKFLSDNTCKI 313 (359)
T ss_dssp H-HHSCHHHHHHHHTHHHHHH
T ss_pred h-hcCCHHHHHHHHHHhHHHH
Confidence 3 4579999999999999986
|
| >1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine; 1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB: 1xrf_A 3d6n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-41 Score=337.14 Aligned_cols=354 Identities=22% Similarity=0.276 Sum_probs=234.0
Q ss_pred CccEEEECcEEEcCCC--ceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHH
Q 014320 52 SSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS 129 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~--~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~ 129 (427)
|++++|+|++|++++. ..+++|+|+||||++|++... +.+.++||++|++|+|||||+|+|+..+ +..+.+++..
T Consensus 46 mm~~~i~~~~v~~~~~~~~~~~~v~i~~g~I~~i~~~~~-~~~~~~iD~~g~~v~PGlID~H~H~~~~--~~~~~~~~~~ 122 (467)
T 1xrt_A 46 MLKLIVKNGYVIDPSQNLEGEFDILVENGKIKKIDKNIL-VPEAEIIDAKGLIVCPGFIDIHVHLRDP--GQTYKEDIES 122 (467)
T ss_dssp CCEEEEESCEEEEGGGTEEEECEEEEETTEEEEEESSCC-CSSEEEEECTTSEEEECEEEEEECCCTT--TCTTTCCHHH
T ss_pred eeeEEEEeeEEECCCCCceecceEEEECCEEEEecCCCC-CCCCcEEeCCCCEEccCEEEEeecccCC--CCCchhhHHH
Confidence 3478999999998764 467899999999999997543 2346899999999999999999999875 4455677888
Q ss_pred HHHHHHcCCceEEecCcCCCCC-cHHHHHHHHHHHhcc-ccceeceeccccC-CChhhHHHHHHHHHHcCCCeEEEEEec
Q 014320 130 GQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN-SCMDYGFHMAITK-WDEVVSDEMEVMVKEKGINSFKFFMAY 206 (427)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~g~~~ik~~~~~ 206 (427)
.++.++++||||++|+...... ...+.++...+.... ..+++...+.... ...+.+++++++. ..|+..+ ..
T Consensus 123 ~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~l~-~~g~~~i----~~ 197 (467)
T 1xrt_A 123 GSRCAVAGGFTTIVCMPNTNPPIDNTTVVNYILQKSKSVGLCRVLPTGTITKGRKGKEIADFYSLK-EAGCVAF----TD 197 (467)
T ss_dssp HHHHHHHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEEEECBCSBGGGCSSSBCCHHHHH-HHTCCCB----CC
T ss_pred HHHHHHhCCeEEEEecCCCCCCCChHHHHHHHHHHhcccCcceEEEEeeecCCCCcccHHHHHHHH-HcCCEEE----Ec
Confidence 8899999999999998753221 223333333333222 2233322221111 1112233455555 3566554 23
Q ss_pred CCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCE
Q 014320 207 KGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286 (427)
Q Consensus 207 ~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~ 286 (427)
++....+.+.++++++.|+++|+++.+|+++...+.... +.|....+.+...++...|..++.+.+.++...+.++
T Consensus 198 ~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~~~~~l----~~g~~~~~~g~~~~~~~~e~~~~~~~~~~~~~~g~~~ 273 (467)
T 1xrt_A 198 DGSPVMDSSVMRKALELASQLGVPIMDHCEDDKLAYGVI----NEGEVSALLGLSSRAPEAEEIQIARDGILAQRTGGHV 273 (467)
T ss_dssp TTSCCCCHHHHHHHHHHHHHHTCEEEECCCGGGGTC------------------------CHHHHHHHHHHHHHHHCCEE
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCEEEEECCCHHHHHHHH----hcCccchhcccccCChHHHHHHHHHHHHHHHHhCCCE
Confidence 445567899999999999999999999997655432111 1222222222334555667777778888888899999
Q ss_pred EEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEec
Q 014320 287 YVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGT 366 (427)
Q Consensus 287 ~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgS 366 (427)
|++|++..+.++.++++++.|+.+++++||++++++.+.+.. .+...++.||+|.+.++..+|+++++|+++++||
T Consensus 274 hi~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~~~~~~~~~~~----~~~~~~~~pplr~~~~~~~l~~~l~~Gv~~~lgT 349 (467)
T 1xrt_A 274 HIQHVSTKLSLEIIEFFKEKGVKITCEVNPNHLLFTEREVLN----SGANARVNPPLRKKEDRLALIEGVKRGIIDCFAT 349 (467)
T ss_dssp EESCCCSHHHHHHHHHHHHTTCCEEEEECGGGGC--------------------------CCHHHHHHHHHHTCSCEECC
T ss_pred EEEeCCCHHHHHHHHHHHhcCCcEEEeccHHHHhcCHhHhhc----cCceEEEcCCCCCHHHHHHHHHHHhCCceEEEee
Confidence 999999988889999999999999999999999887665421 1246678899999999999999999999999999
Q ss_pred CCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 367 DHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 367 D~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
||.|++...|. .|+..+.|++|.+++++.++. ++..+.++++++++++|.|||++
T Consensus 350 D~~~~~~~~~~----~~~~~~~g~~g~e~~l~~~l~-~~~~g~ls~~~al~~aT~n~A~~ 404 (467)
T 1xrt_A 350 DHAPHQTFEKE----LVEFAMPGIIGLQTALPSALE-LYRKGIISLKKLIEMFTINPARI 404 (467)
T ss_dssp CBCCCCC---------------CCCCGGGHHHHHHH-HHHTTSSCHHHHHHHHTHHHHHH
T ss_pred CCCCCChhHhc----ccccCCCCCccHHHHHHHHHH-HHHcCCCCHHHHHHHhccCHHHH
Confidence 99998876542 377789999999999998886 66666799999999999999984
|
| >2z26_A Dihydroorotase, dhoase; TIM barrel, hydrolase; HET: KCX DOR NCD; 1.29A {Escherichia coli} PDB: 2z24_A* 2z25_A* 2eg6_A* 1xge_A* 2eg7_A* 2eg8_A* 2z27_A* 2e25_A* 2z28_A* 2z29_A* 3mjm_A* 2z2a_A* 1j79_A* 2z2b_A* 3ihn_A* 3jze_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-39 Score=310.52 Aligned_cols=287 Identities=14% Similarity=0.125 Sum_probs=217.8
Q ss_pred CCCEEeccccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCC-cHHHHHHHHHHHhc-cccceecee--
Q 014320 99 TGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFH-- 174 (427)
Q Consensus 99 ~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~-- 174 (427)
.+++|+||+||+|+|+.+. . ...+.++++++||||++||.+..+. ...+.++.+.+... ...+++.++
T Consensus 4 ~~~~v~PG~ID~HvH~~~g---~-----~~~e~~aa~~gGvTtvv~mpnt~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (347)
T 2z26_A 4 SQVLKIRRPDDWHLHLRDG---D-----MLKTVVPYTSEIYGRAIVMPNLAPPVTTVEAAVAYRQRILDAVPAGHDFTPL 75 (347)
T ss_dssp CCEEEEECCCEEEECCCSH---H-----HHHHHHHHHHTTCSEEEECCCCSSCCCSHHHHHHHHHHHHHTSCTTCCCEEE
T ss_pred CCeEECCCcceeeecCCCC---C-----chhhHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHhcccCCcccEEEE
Confidence 4579999999999999762 1 1234588999999999999754333 34455555544433 334333332
Q ss_pred ccccCCChhhHHHHHHHHHHcCC-CeEEEEEecC----CCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHH
Q 014320 175 MAITKWDEVVSDEMEVMVKEKGI-NSFKFFMAYK----GSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMI 249 (427)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~~g~-~~ik~~~~~~----~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~ 249 (427)
+......+...+++.++. +.|+ .++|+|+.+. +....+.+.++++++.+++.|+++.+|+|+....
T Consensus 76 ~~~~~~~~~~~~ei~~l~-~~G~~~g~K~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~vH~ed~~~~-------- 146 (347)
T 2z26_A 76 MTCYLTDSLDPNELERGF-NEGVFTAAKLYPANATANSSHGVTSVDAIMPVLERMEKIGMPLLVHGEVTHAD-------- 146 (347)
T ss_dssp EEEECCTTCCHHHHHHHH-HTTSEEEEEECCCCTTCCTTTCCSCGGGGHHHHHHHHHHTCCEEECCCCCCTT--------
T ss_pred EEEEeCCCCCHHHHHHHH-HCCCeEEEEEeecCCcCCCCCccCCHHHHHHHHHHHHHhCCEEEEEecCCccc--------
Confidence 332112222366788777 6897 7999999864 2334578899999999999999999999976411
Q ss_pred HcCCCCcccccccCCHHHHHHHHHHHH--HHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCccccc
Q 014320 250 ELGITGPEGHALSRPPLLEGEATTRAI--RLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLW 327 (427)
Q Consensus 250 ~~G~~~~~~~~~~~p~~~e~~a~~~~~--~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~ 327 (427)
. .+...|..++.+.+ .+++..++++|++|+++.++++.+++++ .+|++++||||++++++++.
T Consensus 147 ----~--------~~~~~E~~~~~~~i~~~la~~~~~~~hi~Hvst~~~~~~i~~ak---~~Vt~e~~ph~L~l~~~~~~ 211 (347)
T 2z26_A 147 ----I--------DIFDREARFIESVMEPLRQRLTALKVVFEHITTKDAADYVRDGN---ERLAATITPQHLMFNRNHML 211 (347)
T ss_dssp ----S--------CGGGHHHHHHHHTHHHHHHHSTTCCEEECSCCSHHHHHHHHTSC---TTEEEEECHHHHHCCHHHHH
T ss_pred ----c--------CHHHHHHHHHHHHHHHHHHhhcCCcEEEEECCcHHHHHHHHHhC---CCceEeecchHheecHHHhc
Confidence 0 11223566677777 5788899999999999999988888775 58999999999999988774
Q ss_pred CCCcccCceeEEcCCCCCcccHHHHHHHHhcCCce-EEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHh
Q 014320 328 HSDFVTAAKYVMSPPIRASGHNKALQAALATGILQ-LVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVE 406 (427)
Q Consensus 328 ~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~-~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~ 406 (427)
..+ .+..++++||||++.|+++||+++.+|.++ +|+|||+||..++|.. ++. .+|+.|+++.+|++++ .+
T Consensus 212 ~~~--~~~~~k~~PPLR~~~d~~aL~~~l~~G~id~~i~SDhaP~~~~~K~~---~~g--~~Gi~~~e~~l~l~~~-~~- 282 (347)
T 2z26_A 212 VGG--VRPHLYCLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKES---SCG--CAGCFNAPTALGSYAT-VF- 282 (347)
T ss_dssp TTS--BCGGGCCSSCCCCHHHHHHHHHHHHTTCTTEEECCCBCCCCHHHHSS---SSB--CCCCCCTTTHHHHHHH-HH-
T ss_pred CcC--CCccEEEeCCCCCHHHHHHHHHHHhcCCCCeEEecCCCCCCHHHhcC---CCC--CCCcCcHHHHHHHHHH-Hh-
Confidence 222 246899999999999999999999999999 8999999999887742 332 5889999999999985 44
Q ss_pred cCCCCHHHHHHHHchhhhcC
Q 014320 407 SGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 407 ~~~l~l~~~v~~~t~npA~~ 426 (427)
+++++++++++++|.||||+
T Consensus 283 ~~~~sl~~~v~~~s~nPAki 302 (347)
T 2z26_A 283 EEMNALQHFEAFCSVNGPQF 302 (347)
T ss_dssp HHTTCGGGHHHHHHTHHHHH
T ss_pred hcCCCHHHHHHHHhHhHHHH
Confidence 46799999999999999985
|
| >3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase; 1.50A {Bordetella bronchiseptica} PDB: 3giq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-34 Score=287.48 Aligned_cols=324 Identities=18% Similarity=0.128 Sum_probs=236.2
Q ss_pred CCccEEEECcEEEcCCC--ceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHH
Q 014320 51 SSSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFF 128 (427)
Q Consensus 51 ~~~~~~i~~~~i~~~~~--~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~ 128 (427)
|+.+++|+|++|+++++ ...++|+|+||||++|++... +.+.++||++|++|+|||||+|+|+...... .+
T Consensus 5 ~~~~~~i~~~~v~~~~~~~~~~~~v~i~~g~I~~i~~~~~-~~~~~~id~~g~~v~PG~iD~H~H~~~~~~~--~~---- 77 (480)
T 3gip_A 5 EKLDFKITGGWIIDGTGAPRRRADLGVRDGRIAAIGELGA-HPARHAWDASGKIVAPGFIDVHGHDDLMFVE--KP---- 77 (480)
T ss_dssp CCEEEEEESSEECCSSSCCCEECEEEEETTEEEEEECCTT-SCEEEEEECTTSEEEECEEESSCCCTTHHHH--ST----
T ss_pred ccCCEEEECcEEECCCCCeeeeeEEEEECCEEEEecCCCC-CCCCeEEECCCCEEccCEEeccccccccccC--Ch----
Confidence 46789999999999876 468999999999999998643 3457899999999999999999998654111 11
Q ss_pred HHHHHHHcCCceEEecC---------cCCCCC-cH---------HHHHHHHHHHh--ccccceeceecccc---------
Q 014320 129 SGQAAALAGGTTMHIDF---------VIPING-SL---------TAGFEAYEKKA--KNSCMDYGFHMAIT--------- 178 (427)
Q Consensus 129 ~~~~~~l~~GvTtv~d~---------~~~~~~-~~---------~~~~~~~~~~~--~~~~~~~~~~~~~~--------- 178 (427)
+...++.+||||+++. ...... .. ++.+..+.+.. ....++++++.+..
T Consensus 78 -~~~~~~~~G~Tt~~~g~cG~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~r~~~~g~ 156 (480)
T 3gip_A 78 -DLRWKTSQGITTVVVGNCGVSAAPAPLPGNTAAALALLGETPLFADVPAYFAALDAQRPMINVAALVGHANLRLAAMRD 156 (480)
T ss_dssp -TCHHHHTTTEEEEEECCTTCCSCSCCCTTCCCGGGGGTCSSCCCSSHHHHHHHHHHSCCSSEEEEEEEHHHHHHHHCSS
T ss_pred -hHHHHhcCCeeEEEecCCCcCCCCCCcccchhhhhhhhccCccccCHHHHHHHHHhCCCCceEEEccccHHHHHHhcCC
Confidence 1235699999999983 111100 00 11233333332 23566776654321
Q ss_pred ---CCChhhHHHHHHHHH---HcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcC
Q 014320 179 ---KWDEVVSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELG 252 (427)
Q Consensus 179 ---~~~~~~~~~~~~l~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G 252 (427)
..+.+.++++.++++ ..|+.+++.++.+......+.+++.++++.++++|.++.+|+++....
T Consensus 157 ~~~~~~~~~l~~m~~l~~~~~~~Ga~g~~~~~~y~p~~~~~~~el~~~~~~a~~~g~~v~~H~~~~~~~----------- 225 (480)
T 3gip_A 157 PQAAPTAAEQQAMQDMLQAALEAGAVGFSTGLAYQPGAVAQAAELEGLARVAAERRRLHTSHIRNEADG----------- 225 (480)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHHTCCEEEEETTSTTGGGCCHHHHHHHHHHHHHTTCEEEEECSCSSTT-----------
T ss_pred cCCCCCHHHHHHHHHHHHHHHHCCCcEEeecCccCCcccCCHHHHHHHHHHHHHcCCEEEEEecCcccc-----------
Confidence 124455667776664 579999999987765555688999999999999999999999765321
Q ss_pred CCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCC---------CHHHHHHHHHHhhcCCCEEEecCccceeeCc
Q 014320 253 ITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM---------SMDAMEEIAKARKAGQRVIGEPVVSGLVLDD 323 (427)
Q Consensus 253 ~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~---------~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~ 323 (427)
+..++.+.+.++++.|++++++|++ +.+.++.++.++++|++|++++|||++.++.
T Consensus 226 ---------------~~~a~~e~i~la~~~g~~v~i~H~s~~~~~~~~~~~~~l~~i~~a~~~G~~Vt~e~~p~~~~~t~ 290 (480)
T 3gip_A 226 ---------------VEAAVEEVLAIGRGTGCATVVSHHKCMMPQNWGRSRATLANIDRAREQGVEVALDIYPYPGSSTI 290 (480)
T ss_dssp ---------------HHHHHHHHHHHHHHHCCEEEETTCCCCSGGGTTTHHHHHHHHHHHHHTTCCEEEEECSCSCEEEE
T ss_pred ---------------HHHHHHHHHHHHHHhCCCEEEEEEeccCccchhhHHHHHHHHHHHHHcCCceEEEeeccccCcch
Confidence 2467788889999999999999998 4788999999999999999999999999887
Q ss_pred ccccCCCcccCceeEEc-------CCCCC-----------cccHHHHHHHHhc-----------------CCceEEecCC
Q 014320 324 SWLWHSDFVTAAKYVMS-------PPIRA-----------SGHNKALQAALAT-----------------GILQLVGTDH 368 (427)
Q Consensus 324 ~~~~~~~~~~~~~~~~~-------pplr~-----------~~~~~~l~~~l~~-----------------G~~~~lgSD~ 368 (427)
..+.+.+ .+.+++ ||++. ..+.+++++++.. +...++|||+
T Consensus 291 ~~l~~~~----~~~~~~~~~~~~~p~~~g~~~~~ia~~~~~~~~~a~~~~l~~g~i~~~~~~~~~~~~~~~~~~~~gsD~ 366 (480)
T 3gip_A 291 LIPERAE----TIDDIRITWSTPHPECSGEYLADIAARWGCDKTTAARRLAPAGAIYFAMDEDEVKRIFQHPCCMVGSDG 366 (480)
T ss_dssp CCGGGTT----TSSCCEEEEESSCGGGTTCBHHHHHHHHTSCHHHHHHHHCSEEEEECCCCHHHHHHHHHSTTEEECCCC
T ss_pred hhhcCHH----HHHHHhhccccCCCccCCCcHHHHHHHcCCCHHHHHHHhccCCeEEEeCCHHHHHHHHcCCCeEEecCC
Confidence 6654322 355556 88854 4456667655543 4456677776
Q ss_pred CCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHh-cCCCCHHHHHHHHchhhhcC
Q 014320 369 CAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVE-SGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 369 ~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~-~~~l~l~~~v~~~t~npA~~ 426 (427)
.++. ....+..+..++.++..++. ++.+|++++++++|.|||++
T Consensus 367 ~~~~--------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~t~~~a~~ 411 (480)
T 3gip_A 367 LPND--------------ARPHPRLWGSFTRVLGRYVREARLMTLEQAVARMTALPARV 411 (480)
T ss_dssp CTTC--------------SSCCTHHHHHHHHHHHCCCCCTCSSCHHHHHHHHTHHHHHH
T ss_pred cccC--------------CCCChhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Confidence 6543 12456677888888866665 47799999999999999974
|
| >4f0r_A 5-methylthioadenosine/S-adenosylhomocysteine DEAM; structural genomics, PSI-biology; HET: MSE MTA; 1.80A {Chromobacterium violaceum} PDB: 4f0s_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-30 Score=254.15 Aligned_cols=313 Identities=17% Similarity=0.203 Sum_probs=204.5
Q ss_pred CCCccEEEECcEEEcCCC----ceeeeEEEeCCeEEEeeCCCCC--CCCceEEeCCCCEEeccccccccccccCcC-CC-
Q 014320 50 QSSSKILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS- 121 (427)
Q Consensus 50 ~~~~~~~i~~~~i~~~~~----~~~~~i~i~~g~I~~vg~~~~~--~~~~~viD~~g~~v~PG~ID~H~H~~~~~~-g~- 121 (427)
.|+.+++|+|++|+++++ ..+++|+|+||||++||+..+. .++.++||++|++|+|||||+|+|+.+... |.
T Consensus 3 ~~~~~~li~~~~v~~~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~~~~~~viD~~g~~v~PGlID~H~Hl~~~~~~g~~ 82 (447)
T 4f0r_A 3 QSRYEKIISARWIITVETDGEVLENHAIAIRDGKIAAIIPAADAAGLEADERLELPDHVLMPGLINLHGHSAMSLLRGLA 82 (447)
T ss_dssp --CEEEEEEEEEEECCSSTTCEEEEEEEEEETTEEEEEEEHHHHTTSCEEEEEEEEEEEEEECEEEEEECGGGGGGTTSS
T ss_pred CCcccEEEECCEEEeeCCCCcEeeceEEEEECCEEEEEecccccccCCCCeEEeCCCcEEeeCccchhhChhhHhhccCC
Confidence 356789999999998653 4689999999999999985432 245789999999999999999999965421 11
Q ss_pred --------------------CChhhHHH----HHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceeccc
Q 014320 122 --------------------ETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAI 177 (427)
Q Consensus 122 --------------------~~~e~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (427)
.++++++. ....++++||||+.|+.. ......+...+.+.+..+........
T Consensus 83 ~~~~~~~wl~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~----~~~~~~~~~~~~g~r~~~~~~~~~~~ 158 (447)
T 4f0r_A 83 DDKALMDWLTNYIWPTEGKHVHDDFVFDGSLLAMGEMIRGGTTTINDMYF----YNAAVARAGLASGMRTFVGCSILEFP 158 (447)
T ss_dssp CSSCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHHHHHTTEEEEEECBS----CHHHHHHHHHHHTCEEEEEEEECSSC
T ss_pred CCCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHhCCcEEEEEccc----CHHHHHHHHHHcCCeEEEEchhcCCC
Confidence 23343433 344578899999999843 23344555566665544444332111
Q ss_pred ---cCCChhhHHHHHHHHHH-cCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-CChhhHHHHHHHHHHcC
Q 014320 178 ---TKWDEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELG 252 (427)
Q Consensus 178 ---~~~~~~~~~~~~~l~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~~l~~~G 252 (427)
....++.++.+.++.+. .+...+++.+.+++.+.++++.++++++.|+++|+++++|+ ++.+.+....+ ..|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~iH~~~~~~~~~~~~~---~~g 235 (447)
T 4f0r_A 159 TNYASNADDYIAKGMAERSQFLGEDLLTFTLAPHAPYTVSDDTFRKVVTLAEQEDMLIHCHIHETADEVNNSVK---EHG 235 (447)
T ss_dssp CSSCSSHHHHHHHHHHHHHTTTTCTTEEEEEEECCGGGSCHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHHHH---HHS
T ss_pred cccccCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHH---HcC
Confidence 11223455556665532 36678899888888888999999999999999999999998 55455543322 222
Q ss_pred CCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcc
Q 014320 253 ITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFV 332 (427)
Q Consensus 253 ~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~ 332 (427)
.. .+ +.+......+.+..+.|+..... +.++++++.|+.+.. ||...+...
T Consensus 236 ~~----------------~i-~~~~~~g~~~~~~~~~H~~~~~~-~~~~~~~~~g~~~~~--~p~~~~~~~--------- 286 (447)
T 4f0r_A 236 QR----------------PL-ARLQRLGLLSPRLVAAHMVHLND-AEVELAARHGLSTAH--NPASNMKLA--------- 286 (447)
T ss_dssp SC----------------HH-HHHHHHTCCSTTEEEEECCSCCH-HHHHHHHHHTCEEEE--CHHHHHHTT---------
T ss_pred CC----------------HH-HHHHHcCCCCCCcEEEeccCCCH-HHHHHHHHcCCEEEE--CchhhhhcC---------
Confidence 21 00 11111222345678889887654 668888888876664 765322111
Q ss_pred cCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHH--hcCCC
Q 014320 333 TAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV--ESGQI 410 (427)
Q Consensus 333 ~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~--~~~~l 410 (427)
.. .+| ++++++.|+.+++|||+.+.+...+ ...+.++..++.... ...++
T Consensus 287 --~~---~~~---------~~~~~~~Gv~v~lgTD~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~l 338 (447)
T 4f0r_A 287 --SG---ISP---------VSKLMDAGVAVGIGTDGAASNNKLD--------------MLAETRLAALLAKVGTLDPTSV 338 (447)
T ss_dssp --CC---CCC---------HHHHHHTTCEEEECCCCGGGTCCCC--------------HHHHHHHHHHHHHHHHTCTTSS
T ss_pred --CC---CCc---------HHHHHHCCCcEEEeCCCCcCCCCCC--------------HHHHHHHHHHHhhhhccCCCCC
Confidence 01 133 5678999999999999865422111 112334444343332 24689
Q ss_pred CHHHHHHHHchhhhcC
Q 014320 411 SVTDYVRLTSTEWGRL 426 (427)
Q Consensus 411 ~l~~~v~~~t~npA~~ 426 (427)
|++++++++|.|||++
T Consensus 339 ~~~~al~~~T~n~A~~ 354 (447)
T 4f0r_A 339 PAAAAIRMATLNGARA 354 (447)
T ss_dssp CHHHHHHHHTHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999999974
|
| >1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase; 1.43A {Alcaligenes faecalis} SCOP: b.92.1.6 b.92.1.6 c.1.9.11 PDB: 1rjp_A 1v51_A 1rjq_A 1rjr_A 1rk5_A 1v4y_A 1m7j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-30 Score=258.15 Aligned_cols=323 Identities=15% Similarity=0.150 Sum_probs=214.5
Q ss_pred ccEEEECcEEEcCCC--ceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHHH
Q 014320 53 SKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSG 130 (427)
Q Consensus 53 ~~~~i~~~~i~~~~~--~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~ 130 (427)
++++|+|++|+++.. ..+++|+|+||||++|++... +.+.++||++|++|+|||||+|+|+..+.. .. ..
T Consensus 21 ~~~~i~~~~v~~~~~~~~~~~~v~i~~g~I~~i~~~~~-~~~~~~iD~~g~~v~PG~iD~H~H~~~~~~--~~-----~~ 92 (496)
T 1rk6_A 21 FDYILSGGTVIDGTNAPGRLADVGVRGDRIAAVGDLSA-SSARRRIDVAGKVVSPGFIDSHTHDDNYLL--KH-----RD 92 (496)
T ss_dssp BSEEEESSEECCSSSCCCEECEEEEETTEEEEEECCTT-SCBSCEEECTTCEEEECEEESSCCCTTHHH--HC-----TT
T ss_pred ccEEEECCEEEeCCCCceeccEEEEECCEEEEecCCCC-CCCCeEEeCCCCEEecCEeeeeecCCcccc--cc-----HH
Confidence 468999999999865 467899999999999997542 234679999999999999999999876511 00 12
Q ss_pred HHHHHcCCceEEecCcC-----CCC-------------------CcHHHHHHHHHHHhccccceeceeccc---------
Q 014320 131 QAAALAGGTTMHIDFVI-----PIN-------------------GSLTAGFEAYEKKAKNSCMDYGFHMAI--------- 177 (427)
Q Consensus 131 ~~~~l~~GvTtv~d~~~-----~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 177 (427)
.+.++++||||++++.. +.. ......++..+. ....+++.+..+.
T Consensus 93 ~~~~~~~G~Tt~~~~~~g~~~~p~~~~~l~~~i~~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~g~~~~~~~~~~ 170 (496)
T 1rk6_A 93 MTPKISQGVTTVVTGNCGISLAPLAHANPPAPLDLLDEGGSFRFARFSDYLEALRA--APPAVNAACMVGHSTLRAAVMP 170 (496)
T ss_dssp CHHHHTTTEEEEEESCTTCCSCSEECSSCCTTGGGGCSSSCCEESSHHHHHHHHHH--SCCSSEEEEEEEHHHHHHHHCS
T ss_pred HHHHHcCCeEEEEeCCCCCCCCCCChHHHHHhhcccCcccccCccCHHHHHHHHhc--cCCccceEEecccccceeeecc
Confidence 56789999999998742 100 011111222211 1223333322110
Q ss_pred ---cCCChhhHHHHHHHHH---HcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHc
Q 014320 178 ---TKWDEVVSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIEL 251 (427)
Q Consensus 178 ---~~~~~~~~~~~~~l~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~ 251 (427)
.....+.+++++++++ +.|+..++....+......+.+++.++++.++++|.++.+|+++....
T Consensus 171 ~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~el~~~~~~a~~~g~~v~~H~~~~~~~---------- 240 (496)
T 1rk6_A 171 DLRREATADEIQAMQALADDALASGAIGISTGAFYPPAAHASTEEIIEVCRPLITHGGVYATHMRDEGEH---------- 240 (496)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHHHTCCEEEEETTSGGGTTCCHHHHHHHHTHHHHHTCEEEEECSCSSTT----------
T ss_pred ccccCCCHHHHHHHHHHHHHHHHcCCcEEeeccccCCCCCCCHHHHHHHHHHHHHcCCEEEEEeCCCccc----------
Confidence 0012233445555442 468888776543322234578889999999999999999999754211
Q ss_pred CCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcC---------CCHHHHHHHHHHhhcCCCEEEecCccceeeC
Q 014320 252 GITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV---------MSMDAMEEIAKARKAGQRVIGEPVVSGLVLD 322 (427)
Q Consensus 252 G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~---------~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~ 322 (427)
+..++.+.++++++.|++++++|+ ...+.++.++.+++.| .++++++|+++.++
T Consensus 241 ----------------~~~~l~~~~~~a~~~g~~v~i~H~~~~~~~~~g~~~~~~~~l~~a~~~g-~v~~~~~~~~~~~~ 303 (496)
T 1rk6_A 241 ----------------IVQALEETFRIGRELDVPVVISHHKVMGKLNFGRSKETLALIEAAMASQ-DVSLDAYPYVAGST 303 (496)
T ss_dssp ----------------HHHHHHHHHHHHHHHTSCEEECSCCCCSGGGTTTHHHHHHHHHHHHHHS-CEEEEECSCSCEEE
T ss_pred ----------------HHHHHHHHHHHHHHcCCeEEEEEEeccCCcchhhHHHHHHHHHHHHHcC-CeEEEEeccCCCCC
Confidence 235567777888889999999999 3445578888888899 99999999877655
Q ss_pred cccccCCCcccCceeEEcCC---C-----------CCcccHHHHHHHHhcCC-----------------ceEEecCCCCC
Q 014320 323 DSWLWHSDFVTAAKYVMSPP---I-----------RASGHNKALQAALATGI-----------------LQLVGTDHCAF 371 (427)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~pp---l-----------r~~~~~~~l~~~l~~G~-----------------~~~lgSD~~p~ 371 (427)
...+....-..+..+.++|+ + ++..+++++|+++++|+ .+++|||+.|+
T Consensus 304 ~~~~~~l~~~~~~~v~~~p~~~~l~~~~l~~~~~~~g~~~~~~l~~~l~~G~i~~~~~~~~v~~~~~~~~~~iGTD~~~~ 383 (496)
T 1rk6_A 304 MLKQDRVLLAGRTLITWCKPYPELSGRDLEEIAAERGKSKYDVVPELQPAGAIYFMMDEPDVQRILAFGPTMIGSDGLPH 383 (496)
T ss_dssp ECCCCTTTTSSCEEEEEESSCGGGTTCBHHHHHHHTTSCHHHHHHHHCSEEEEECCCCHHHHHHHHHSTTEEECCCCCTT
T ss_pred cccHHHhcCccceEEeccCCCcccccCcHHHHHHHcCCCHHHHHHHHHhcCceeecCCHHHHHHHHcCCCEEEecCCCCC
Confidence 43332110000123334343 2 56667899999999999 47999999876
Q ss_pred ChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHh-cCCCCHHHHHHHHchhhhcC
Q 014320 372 NSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVE-SGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 372 ~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~-~~~l~l~~~v~~~t~npA~~ 426 (427)
+. + .....+..++.++..++. .+.++++++++++|.||||+
T Consensus 384 ~~--~------------~~~~~~~~~~~~l~~~v~~~~~l~~~~~l~~~T~~~A~~ 425 (496)
T 1rk6_A 384 DE--R------------PHPRLWGTFPRVLGHYSRDLGLFPLETAVWKMTGLTAAK 425 (496)
T ss_dssp CS--S------------CCTHHHHHHHHHHCCCCCCTCSSCHHHHHHTTTHHHHHH
T ss_pred CC--C------------CCchhhccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Confidence 41 1 022344466766644443 46699999999999999974
|
| >3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel, beta-fold, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Oleispira antarctica} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-29 Score=249.39 Aligned_cols=312 Identities=17% Similarity=0.153 Sum_probs=202.8
Q ss_pred CCccEEEECcEEEcCCC----------ceeeeEEEeCCeEEEeeCCCC-CCCCceEEeCCCCEEeccccccccccccCcC
Q 014320 51 SSSKILIKGGTVVNAHH----------QQIADVYVEDGIVVAVQPNIN-VGDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119 (427)
Q Consensus 51 ~~~~~~i~~~~i~~~~~----------~~~~~i~i~~g~I~~vg~~~~-~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~ 119 (427)
++++++|+|++|+++++ .++++|+|+||||++||+... .+++.++||++|++|+|||||+|+|+.+...
T Consensus 21 ~~~~~li~~~~v~~~~~~~~~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~~~~~viD~~g~~v~PGlID~H~H~~~~~~ 100 (468)
T 3lnp_A 21 AHADLRINSHWIIPIENTTDHNLVSNILIDHCLLIKDGIILAIEPQSSCQIPATETLDLGQQVLMPGWVNAHGHAAMSLF 100 (468)
T ss_dssp CCEEEEEEEEEECCSSCC-----CCSCEEEEEEEEETTEEEEEEETTTCCCCEEEEEECCSEEEEECEEECSCCGGGGGG
T ss_pred ccccEEEECCEEEeecCCcccccCccEecceEEEEECCEEEEEeCCccccCCCCeEEeCCCcEEEeCeechhhChhhhhh
Confidence 35789999999998653 348899999999999998654 2346789999999999999999999965421
Q ss_pred -C---------------------CCChhhHHH----HHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceece
Q 014320 120 -G---------------------SETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGF 173 (427)
Q Consensus 120 -g---------------------~~~~e~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (427)
| ..++++++. ....++++||||+.|+... .....+...+.+.+..+....
T Consensus 101 ~g~~~~~~l~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~----~~~~~~~~~~~g~r~~~~~~~ 176 (468)
T 3lnp_A 101 RGLADDLPLMTWLQEHVWPAEAQHVDEHFVKQGTELAIAEMIQSGTTTFADMYFY----PQQSGEAALAAGIRAVCFAPV 176 (468)
T ss_dssp TTSSCSCCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHHHHHTTEEEEEECCSC----HHHHHHHHHHHTCEEEEEEEE
T ss_pred ccCcCCCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHhCCcEEEEEcccC----HHHHHHHHHHcCCeEEEeccc
Confidence 1 123333332 3455799999999997432 234455556666555444433
Q ss_pred eccc---cCCChhhHHHHHHHHHH-cCCC-----eEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-CChhhHHH
Q 014320 174 HMAI---TKWDEVVSDEMEVMVKE-KGIN-----SFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFE 243 (427)
Q Consensus 174 ~~~~---~~~~~~~~~~~~~l~~~-~g~~-----~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~ 243 (427)
.... ....++.++...++.+. .+.. .+++.+.+++.+.++++.++++++.|+++|+++++|+ ++...+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~ 256 (468)
T 3lnp_A 177 LDFPTNYAQNADEYIRKAIECNDRFNNHPMNEQGLVQIGFGPHAPYTVSDEPLKEITMLSDQLDMPVQIHLHETDFEVSE 256 (468)
T ss_dssp CSSCCSSCSSHHHHHHHHHHHHHHHHSCGGGTTCCEEEEEEECCTTTSCHHHHHHHHHHHHHHTCCEEEEESCSHHHHHH
T ss_pred cCCCcccccCHHHHHHHHHHHHHHhhcCCcccCceEEEEEEcCCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHH
Confidence 2111 11223444555555432 3443 7888888888889999999999999999999999998 55455543
Q ss_pred HHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCc
Q 014320 244 GQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDD 323 (427)
Q Consensus 244 ~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~ 323 (427)
..+ ..|.. .+ +.+......+.+..+.|+..... +.++.+++.|+.+.. ||...+...
T Consensus 257 ~~~---~~g~~----------------~i-~~~~~~g~l~~~~~~~H~~~~~~-~~~~~l~~~g~~v~~--~p~s~~~~~ 313 (468)
T 3lnp_A 257 SLE---TFNKR----------------PT-QRLADIGFLNERVSCVHMTQVDD-GDIKILQKTGASIIH--CPESNLKLA 313 (468)
T ss_dssp HHH---HHSSC----------------HH-HHHHHTTCCSTTEEEEECCSCCH-HHHHHHHHHCCEEEE--CHHHHHHTT
T ss_pred HHH---HhCCC----------------HH-HHHHHcCCCCCCeEEEeccCCCH-HHHHHHHhcCCEEEE--ChhhhhhcC
Confidence 332 22211 00 01111122345678889877654 668888888876664 775322111
Q ss_pred ccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHH
Q 014320 324 SWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDT 403 (427)
Q Consensus 324 ~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~ 403 (427)
. ..+| ++++++.|+.+++|||+.+.+...+. -.+.++...+.+
T Consensus 314 -----------~---~~~~---------~~~~~~~Gv~v~lgtD~~~~~~~~~~--------------~~~~~~~~~~~~ 356 (468)
T 3lnp_A 314 -----------S---GFCP---------IAKLSAANIPLAIGTDGAASNNDLDM--------------FSETKTAALLAK 356 (468)
T ss_dssp -----------C---CCCC---------HHHHHHTTCCEEECCCCTTSSCCCCH--------------HHHHHHHHHHHH
T ss_pred -----------C---CCCC---------HHHHHHCCCeEEEECCCCcCCCCCCH--------------HHHHHHHHHHhh
Confidence 0 1133 56688999999999998654322111 123344443333
Q ss_pred HH--hcCCCCHHHHHHHHchhhhcC
Q 014320 404 MV--ESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 404 ~~--~~~~l~l~~~v~~~t~npA~~ 426 (427)
.. ...+++++++++++|.|||++
T Consensus 357 ~~~~~~~~l~~~~al~~~T~~~A~~ 381 (468)
T 3lnp_A 357 GVSQDASAIPAIEALTMATLGGARA 381 (468)
T ss_dssp HHHTCTTSSCHHHHHHHHTHHHHHH
T ss_pred hccCCCCcCCHHHHHHHHHHHHHHH
Confidence 22 256799999999999999974
|
| >4dyk_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO PSI-biology, NEW YORK structural genomics research consorti hydrolase; 2.00A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-29 Score=250.43 Aligned_cols=313 Identities=16% Similarity=0.163 Sum_probs=204.0
Q ss_pred CCCccEEEECcEEEcCCC----ceeeeEEEeCCeEEEeeCCCC--CCCCceEEeCCCCEEeccccccccccccCcCC---
Q 014320 50 QSSSKILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNIN--VGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG--- 120 (427)
Q Consensus 50 ~~~~~~~i~~~~i~~~~~----~~~~~i~i~~g~I~~vg~~~~--~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g--- 120 (427)
.++.+++|+|++|+++++ ..+++|+|+||||++||+..+ .+++.++||++|++|+|||||+|+|+.+....
T Consensus 5 ~~~~~~li~~~~v~~~~~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~~g~~ 84 (451)
T 4dyk_A 5 RNPFDLLLLPTWIVPVEPAGVVLRDHALGIRDGQIALVAPREQAMRHGATEIRELPGMLLAPGLVNAHGHSAMSLFRGLA 84 (451)
T ss_dssp -CCEEEEEEEEEECCSSSTTCCEESEEEEEETTEEEEEEEHHHHTTTCEEEEEEEEEEEEEECEEECCCCGGGGGGTTSS
T ss_pred cchhcEEEECCEEEeeCCCCcEEeccEEEEECCEEEEEeCccccccCCCCeEEeCCCCEEeecccchhhChhhHHhccCC
Confidence 346789999999999653 367999999999999997542 23457899999999999999999999654221
Q ss_pred -------------------CCChhhHHHHH----HHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceeccc
Q 014320 121 -------------------SETIDDFFSGQ----AAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAI 177 (427)
Q Consensus 121 -------------------~~~~e~~~~~~----~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (427)
..++++++..+ ..++++|||++.|+... .....+...+.+.+..+........
T Consensus 85 ~~~~l~~wl~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~----~~~~~~a~~~~g~r~~~~~~~~~~~ 160 (451)
T 4dyk_A 85 DDLPLMTWLQDHIWPAEGQWVSEDFIRDGTELAIAEQVKGGITCFSDMYFY----PQAICGVVHDSGVRAQVAIPVLDFP 160 (451)
T ss_dssp CSSCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHHHHHTTEEEEEEECSC----HHHHHHHHHHHTCEEEEEEEECSSC
T ss_pred CCCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHhCCcEEEEEcccC----HHHHHHHHHHcCCeEEEEchhhCCC
Confidence 12344444433 44579999999998422 2344555566665554443332111
Q ss_pred ---cCCChhhHHHHHHHHHH-cCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-CChhhHHHHHHHHHHcC
Q 014320 178 ---TKWDEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELG 252 (427)
Q Consensus 178 ---~~~~~~~~~~~~~l~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~~l~~~G 252 (427)
....++.+++..++.+. .+...+++.+.++..+.++++.++++++.|+++|+++++|+ ++.+.+....+. .|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~---~g 237 (451)
T 4dyk_A 161 IPGARDSAEAIRQGMALFDDLKHHPRIRIAFGPHAPYTVSDDKLEQILVLTEELDASIQMHVHETAFEVEQAMER---NG 237 (451)
T ss_dssp BTTBSSHHHHHHHHHHHHHHTTTCSSEEEEEEECCGGGSCHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHHHHH---HS
T ss_pred CccccCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCccCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHH---hC
Confidence 11223445555555543 46677888889998889999999999999999999999997 555555443321 22
Q ss_pred CCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcc
Q 014320 253 ITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFV 332 (427)
Q Consensus 253 ~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~ 332 (427)
.. .+ +.+......+.+..+.|+..... +.++.+++.|+.+.+ ||...+...
T Consensus 238 ~~----------------~i-~~~~~~g~~~~~~~~~H~~~~~~-~~~~~l~~~g~~v~~--~p~s~~~~~--------- 288 (451)
T 4dyk_A 238 ER----------------PL-ARLHRLGLLGPRFQAVHMTQVDN-DDLAMLVETNSSVIH--CPESNLKLA--------- 288 (451)
T ss_dssp SC----------------HH-HHHHHTTCCSTTEEEEECCCCCH-HHHHHHHHHTCEEEE--CHHHHHHTT---------
T ss_pred CC----------------HH-HHHHHCCCCCCCeEEEECCCCCH-HHHHHHHHcCCEEEE--Chhhhhhcc---------
Confidence 10 00 01111122345678889887654 668888888876665 775322111
Q ss_pred cCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHH--hcCCC
Q 014320 333 TAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV--ESGQI 410 (427)
Q Consensus 333 ~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~--~~~~l 410 (427)
. ..+| ++++++.|+.+++|||+.+.+...+. -.+.++..++.+.. ...++
T Consensus 289 --~---~~~~---------~~~~~~~Gv~v~lgtD~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 340 (451)
T 4dyk_A 289 --S---GFCP---------VEKLWQAGVNVAIGTDGAASNNDLDL--------------LGETRTAALLAKAVYGQATAL 340 (451)
T ss_dssp --C---CCCC---------HHHHHHHTCCEEECCCCGGGSSCCCH--------------HHHHHHHHHHHHHHHTCTTSS
T ss_pred --C---Cccc---------HHHHHhCCCeEEEECCCCccCCCCCH--------------HHHHHHHHHHhhhhcCCCCCC
Confidence 0 1233 56688899999999998654221111 12334444332222 24679
Q ss_pred CHHHHHHHHchhhhcC
Q 014320 411 SVTDYVRLTSTEWGRL 426 (427)
Q Consensus 411 ~l~~~v~~~t~npA~~ 426 (427)
+++++++++|.|||++
T Consensus 341 ~~~~al~~~T~~~A~~ 356 (451)
T 4dyk_A 341 DAHRALRMATLNGARA 356 (451)
T ss_dssp CHHHHHHHHTHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999999974
|
| >2paj_A Putative cytosine/guanine deaminase; NYSGXRC, PSI-II, amidohydrolase, sargasso SEA, enviro sample, structural genomics; 2.70A {Unidentified} SCOP: b.92.1.4 c.1.9.9 | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-28 Score=249.10 Aligned_cols=314 Identities=16% Similarity=0.158 Sum_probs=184.0
Q ss_pred CccEEEECcE-EEcCC--------CceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcC-CC
Q 014320 52 SSKILIKGGT-VVNAH--------HQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS 121 (427)
Q Consensus 52 ~~~~~i~~~~-i~~~~--------~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~-g~ 121 (427)
+++++|+|++ |++++ ...+++|+|+||||++||+..+ +++.++||++|++|+|||||+|+|+..+.. +.
T Consensus 9 ~~~~li~n~~~i~~~~~~~~~~~~~~~~~~v~I~~g~I~~vg~~~~-~~~~~viD~~G~~v~PG~ID~H~H~~~~~~~g~ 87 (492)
T 2paj_A 9 QPSTLIRNAAAIMTGGRGTADDPSRVPGPDIRIVGDTIDAIGALAP-RPGETIVDATDCVIYPAWVNTHHHLFQSLLKGE 87 (492)
T ss_dssp -CEEEEECBSEEBCCCCSSSSSCSBCCCCCEEEETTEEEEESSCCC-CTTCEEEECBTCEEEECEECCCCCGGGGGCCSC
T ss_pred CCCeEEECCEEEEecCCccccccceecccEEEEECCEEEEEcCCCC-CCCCeEEECCCcEEeeCccccccChhhHhhcCc
Confidence 3578999999 99976 2357899999999999998643 345689999999999999999999876521 10
Q ss_pred ----------------------CChhhHHHHHHH----HHcCCceEEecCcCCCCC-----cHHHHHHHHHHHhccccce
Q 014320 122 ----------------------ETIDDFFSGQAA----ALAGGTTMHIDFVIPING-----SLTAGFEAYEKKAKNSCMD 170 (427)
Q Consensus 122 ----------------------~~~e~~~~~~~~----~l~~GvTtv~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 170 (427)
.++++++..++. ++++||||++|+....+. ......+...+.+.+....
T Consensus 88 ~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~ 167 (492)
T 2paj_A 88 PAGLDATLTPWLAATPYRFRALFDERRFRLAARIGLIELARSGCATVADHNYVYYPGMPFDSSAILFEEAEKLGLRFVLL 167 (492)
T ss_dssp C-----------------CGGGCCHHHHHHHHHHHHHHHHTTTEEEEEECCCCCCTTCSSCHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCCHHHHHHhcccchhhcCCHHHHHHHHHHHHHHHHhcCcEEEEechhhcccccccchHHHHHHHHHHcCCEEEEE
Confidence 234666655555 899999999998632211 1222333333333332221
Q ss_pred ecee-------cccc-----CCChhhHHHHHHHHHHc-CC---CeEEEEEecCCC-ccCCHHHHHHHHHHHHHcCCcEEE
Q 014320 171 YGFH-------MAIT-----KWDEVVSDEMEVMVKEK-GI---NSFKFFMAYKGS-FMINDELLIEGFKRCKSLGALAMV 233 (427)
Q Consensus 171 ~~~~-------~~~~-----~~~~~~~~~~~~l~~~~-g~---~~ik~~~~~~~~-~~~~~~~l~~~~~~a~~~g~~v~~ 233 (427)
.+.. +... ...++.+++++++.+.. +. ..+++++++++. +.++++.++++++.|++.|+++++
T Consensus 168 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~ 247 (492)
T 2paj_A 168 RGGATQTRQLEADLPTALRPETLDAYVADIERLAARYHDASPRAMRRVVMAPTTVLYSISPREMRETAAVARRLGLRMHS 247 (492)
T ss_dssp ECCCSCCCSCSTTSCGGGCCCCHHHHHHHHHHHHHHTCCCSTTCSEEEEECCTTTTTSSCHHHHHHHHHHHHHTTCEEEE
T ss_pred chhhcccccccccCCccccccCHHHHHHHHHHHHHHhccCCCCCceEEEEecccCCCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 1111 0000 01123455566666432 21 347888888777 788999999999999999999999
Q ss_pred ecCC-hhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEE
Q 014320 234 HAEN-GDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIG 312 (427)
Q Consensus 234 H~e~-~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~ 312 (427)
|+.+ ..+++...+ ..|.. .+... ......+.+..+.|+..... +.++++++.|+.+
T Consensus 248 H~~~~~~~~~~~~~---~~g~~----------------~~~~~-~~~g~~~~~~~i~H~~~~~~-~~i~~l~~~gv~v-- 304 (492)
T 2paj_A 248 HLSETVGYQDSAYS---MYGKS----------------PVAFC-GEHDWLGSDVWYAHLVKVDA-DEIALLAQTGTGV-- 304 (492)
T ss_dssp ECC----------------CCC----------------HHHHH-HHTTCCSTTEEEESCCSCCH-HHHHHHHHHTCEE--
T ss_pred EeCCChHHHHHHHH---HcCCC----------------HHHHH-HHCCCCCCCcEEEEEecCCH-HHHHHHHHcCCEE--
Confidence 9865 333433221 11210 00000 11111233566788876543 5578888888654
Q ss_pred ecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCch
Q 014320 313 EPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNG 392 (427)
Q Consensus 313 ~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~ 392 (427)
.+||...+. .+ ...||+|. +++.|+++++|||+.+++...+ ++.
T Consensus 305 ~~~p~~~~~-----------l~---~~~~p~~~---------~~~~Gv~v~lgTD~~~~~~~~~------~~~------- 348 (492)
T 2paj_A 305 AHCPQSNGR-----------LG---SGICPVRE---------MADAGVPVSIGVDGAASNEAAD------MIS------- 348 (492)
T ss_dssp EECHHHHHC-----------C--------CCTT---------HHHHTCCEEECCCHHHHCSCCS------HHH-------
T ss_pred EECchhhcc-----------cC---CCCCCHHH---------HHHCCCcEEEeCCCCCCCCCCC------HHH-------
Confidence 457742210 01 12478877 8888999999999855321111 111
Q ss_pred hhHhHHHHHHHH----------------HhcCCCCHHHHHHHHchhhhcC
Q 014320 393 IEERMHLVWDTM----------------VESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 393 ~e~~l~~~~~~~----------------~~~~~l~l~~~v~~~t~npA~~ 426 (427)
+.+....+... +..+++|++++++++|.|||++
T Consensus 349 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~aT~~~A~~ 397 (492)
T 2paj_A 349 -EVHMTWLAQRARLGMLAQPAYRGGSFEGGAGAASIAEVIHWGTAGGARV 397 (492)
T ss_dssp -HHHHHHHHHHHTC-------------------CCHHHHHHHHTHHHHHH
T ss_pred -HHHHHHHHhhhhcccccccccccccccCCcCcCCHHHHHHHHHHHHHHH
Confidence 11111111111 1235699999999999999974
|
| >4dzh_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO YORK structural genomics research consortium; 1.55A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-29 Score=249.43 Aligned_cols=311 Identities=19% Similarity=0.198 Sum_probs=203.8
Q ss_pred CccEEEECcEEEcCCC----ceeeeEEEeCCeEEEeeCCCCCC---CCceEEeCCCCEEeccccccccccccCcC-C---
Q 014320 52 SSKILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNINVG---DDVKVLDATGKFVMPGGIDPHTHLAMEFM-G--- 120 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~----~~~~~i~i~~g~I~~vg~~~~~~---~~~~viD~~g~~v~PG~ID~H~H~~~~~~-g--- 120 (427)
+.+++|+|++|+++++ .++++|+|+||||++||+..+.+ ++.++||++|++|+|||||+|+|+.++.. +
T Consensus 13 ~~d~li~~~~v~~~~~~~~~~~~~~v~I~~g~I~~vg~~~~~~~~~~~~~viD~~g~~v~PGlID~H~Hl~~~~~~g~~~ 92 (472)
T 4dzh_A 13 PCDLLIEAGYVVPIEPHAVVLEDHAVAVSNGVIVAVLPTADARVRFAPARTVSRPDAALMPGLVNAHTHNPMTLLRGVAD 92 (472)
T ss_dssp EEEEEEEEEEECCSSSTTCCEEEEEEEEETTEEEEEEEHHHHHHHEEEEEEEEEEEEEEEECEEEEEECGGGGGGTTSSC
T ss_pred cCcEEEECCEEEecCCCCcEecceEEEEECCEEEEEeCchhhhhcCCCCeEEeCCCcEEEECccccccChhhHHhccccC
Confidence 4678999999998653 46899999999999999754322 35689999999999999999999977421 1
Q ss_pred ------------------CCChhhHHH----HHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceeccc-
Q 014320 121 ------------------SETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAI- 177 (427)
Q Consensus 121 ------------------~~~~e~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 177 (427)
..++++++. +...++++||||+.|++. .....++...+.+.+..+.+......
T Consensus 93 ~~~l~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~----~~~~~~~a~~~~g~r~~~~~~~~~~~~ 168 (472)
T 4dzh_A 93 DLPLMVWLQQHIWPVEAAVIGPEFVADGTTLAIAEMLRGGTTCVNENYF----FADVQAAVYKQHGFRALVGAVIIDFPT 168 (472)
T ss_dssp SCCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHHHHHTTEEEEEEECS----CHHHHHHHHHHTTCEEEEEEEECSSCC
T ss_pred CCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHhCCcEEEEEccc----CHHHHHHHHHHhCCeEEEEecccCCCc
Confidence 122333333 234479999999999862 23344555566665544444332211
Q ss_pred --cCCChhhHHHHHHHHHH-cCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-CChhhHHHHHHHHHHcCC
Q 014320 178 --TKWDEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGI 253 (427)
Q Consensus 178 --~~~~~~~~~~~~~l~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~~l~~~G~ 253 (427)
....++.++++.++.+. .+...+++.++++..+.++++.++++++.|+++|+++++|+ ++..++....+. .|.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~iH~~e~~~~~~~~~~~---~g~ 245 (472)
T 4dzh_A 169 AWASSDDEYFARAGELHDQWRDDPLISTAFAPHAPYTVNDANFERVRMLADQLDMPVHLHTHETAQEVADSVAQ---YGQ 245 (472)
T ss_dssp SSCSSHHHHHHHHHHHHHHHTTCSSEEEEEEECCTTTSCHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHHHHH---HSS
T ss_pred ccccCHHHHHHHHHHHHHHhCCCCceEEEEecCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHH---hCC
Confidence 11224455555555542 35667888889988888999999999999999999999997 665555443322 221
Q ss_pred CCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCccc
Q 014320 254 TGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVT 333 (427)
Q Consensus 254 ~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~ 333 (427)
. .+ +.+......+.+..+.|+..... +.++.+++.|+.+.+ ||...+...
T Consensus 246 ~----------------~i-~~~~~~g~~~~~~~~~H~~~l~~-~~i~~l~~~g~~v~~--~p~s~~~~~---------- 295 (472)
T 4dzh_A 246 R----------------PL-ARLDRLGLVNDRLIAVHMTQLTE-AEIHLCAERGVSVVH--CPESNLKLA---------- 295 (472)
T ss_dssp C----------------HH-HHHHHHTCCSTTEEEEECCSCCH-HHHHHHHHHTCEEEE--CHHHHHHTT----------
T ss_pred C----------------HH-HHHHHcCCCCCCeEEEeccCCCH-HHHHHHHHcCCEEEE--ChHHHHhcC----------
Confidence 0 01 11112223345778899887664 668888888977665 775332111
Q ss_pred CceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHH--hcCCCC
Q 014320 334 AAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV--ESGQIS 411 (427)
Q Consensus 334 ~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~--~~~~l~ 411 (427)
.. .+| ++++++.|+.+++|||+.+.+...+. -.+.++...+.... ...+++
T Consensus 296 -~~---~~~---------~~~~~~~Gv~v~lgtD~~~~~~~~~~--------------~~~~~~a~~~~~~~~~~~~~l~ 348 (472)
T 4dzh_A 296 -SG---FCP---------ACALQRASVNLAIGTDGCASNNDLDM--------------FSENRTAAILAKAVANDATALD 348 (472)
T ss_dssp -CC---CCC---------HHHHHHTTCEEEECCCCTTSSCCCCH--------------HHHHHHHHHHHHHHHTCTTSSC
T ss_pred -CC---Ccc---------HHHHHHCCCCEEEECCCCcCCCCCCH--------------HHHHHHHHHHhhhhcCCCCcCC
Confidence 11 133 56688999999999998643222111 12334433332222 235799
Q ss_pred HHHHHHHHchhhhcC
Q 014320 412 VTDYVRLTSTEWGRL 426 (427)
Q Consensus 412 l~~~v~~~t~npA~~ 426 (427)
++++++++|.|||+.
T Consensus 349 ~~~al~~~T~~~A~~ 363 (472)
T 4dzh_A 349 AATTLRAATLGGARA 363 (472)
T ss_dssp HHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999974
|
| >3ls9_A Triazine hydrolase; atrazine chlorohydrolase TRZN; 1.40A {Arthrobacter aurescens} PDB: 3lsc_A* 3lsb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-28 Score=242.75 Aligned_cols=311 Identities=18% Similarity=0.161 Sum_probs=196.9
Q ss_pred EEEECc-EEEcCCC----ceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCC---------
Q 014320 55 ILIKGG-TVVNAHH----QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG--------- 120 (427)
Q Consensus 55 ~~i~~~-~i~~~~~----~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g--------- 120 (427)
++|+|+ .|++.++ ..+++|+|+||||++||+..+.+++.++||++|++|+|||||+|+|+.++...
T Consensus 2 ~li~n~~~v~t~d~~~~~~~~~~v~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~~g~~~~~~~~ 81 (456)
T 3ls9_A 2 ILIRGLTRVITFDDQERELEDADILIDGPKIVAVGKDLSDRSVSRTIDGRGMIALPGLINSHQHLYEGAMRAIPQLERVT 81 (456)
T ss_dssp EEEEEEEEEECCCTTCCEEEEEEEEEETTEEEEEESSCCCTTCSEEEECTTEEEEECEEEEEECGGGGGGBTCGGGSSCC
T ss_pred EEEEcCcEEEEcCCCCceeccceEEEECCEEEEeCCCCCCCCCCeEEeCCCCEEecCeeecccccchhhhcccccCCCCC
Confidence 689999 6777664 36899999999999999875544567899999999999999999999754221
Q ss_pred -------------------CCChhhHHH----HHHHHHcCCceEEecCcCCCCC-----cHHHHHHHHHHHhccccceec
Q 014320 121 -------------------SETIDDFFS----GQAAALAGGTTMHIDFVIPING-----SLTAGFEAYEKKAKNSCMDYG 172 (427)
Q Consensus 121 -------------------~~~~e~~~~----~~~~~l~~GvTtv~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 172 (427)
..++++++. ....++++||||+.|+...... .....++...+.+.+..+..+
T Consensus 82 l~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~a~~~~g~r~~~~~~ 161 (456)
T 3ls9_A 82 MASWLEGVLTRSAGWWRDGKFGPDVIREVARAVLLESLLGGITTVADQHLFFPGATADSYIDATIEAATDLGIRFHAARS 161 (456)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHTTEEEEEEEECCCCSSSCCTHHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHhccccccccccccCCHHHHHHHHHHHHHHHHhCCeeEEEeccccccCcccchhHHHHHHHHHHcCCEEEEEcc
Confidence 122233322 3345799999999998432211 233445666666655443332
Q ss_pred eecc-----------ccCCChhhHHHHHHHHHH-cC---CCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-C
Q 014320 173 FHMA-----------ITKWDEVVSDEMEVMVKE-KG---INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-E 236 (427)
Q Consensus 173 ~~~~-----------~~~~~~~~~~~~~~l~~~-~g---~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e 236 (427)
.... .....++.+++..++++. .+ ...+++.+.+++.+.++++.++++++.|+++|+++++|+ +
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~e 241 (456)
T 3ls9_A 162 SMTLGKSEGGFCDDLFVEPVDRVVQHCLGLIDQYHEPEPFGMVRIALGPCGVPYDKPELFEAFAQMAADYDVRLHTHFYE 241 (456)
T ss_dssp CCCCCGGGTCSSCGGGCCCHHHHHHHHHHHHHHHCCCSTTCSEEEEECCCCTTTSCHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred ccccccccccCCccccccCHHHHHHHHHHHHHHhhCcCCCCceEEEEecCCCCCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 2110 001123445555665543 33 456788888888889999999999999999999999998 4
Q ss_pred ChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCc
Q 014320 237 NGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVV 316 (427)
Q Consensus 237 ~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p 316 (427)
+... ....+. .|.. . .+.+......+.+..+.|+..... +.++.+++.|+.+.. ||
T Consensus 242 ~~~~-~~~~~~---~~~~----------------~-~~~~~~~g~~~~~~~i~H~~~~~~-~~~~~l~~~g~~~~~--~p 297 (456)
T 3ls9_A 242 PLDA-GMSDHL---YGMT----------------P-WRFLEKHGWASDRVWLAHAVVPPR-EEIPEFADAGVAIAH--LI 297 (456)
T ss_dssp TTHH-HHHHHH---HSSC----------------H-HHHHHHTTCSSTTEEEEECCSCCG-GGHHHHHHHTCEEEE--CH
T ss_pred CchH-HHHHHH---hCCC----------------H-HHHHHHcCCCCCCcEEEeccCCCH-HHHHHHHHcCCEEEE--Ch
Confidence 4433 333221 1210 0 011111222345677888876654 567888888876664 77
Q ss_pred cceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHh
Q 014320 317 SGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEER 396 (427)
Q Consensus 317 ~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~ 396 (427)
.+..... .. .+| ++++++.|+++++|||+.+.+...+. -.+.+
T Consensus 298 ~s~~~l~-----------~~---~~~---------~~~~~~~Gv~v~lgtD~~~~~~~~~~--------------~~~~~ 340 (456)
T 3ls9_A 298 APDLRMG-----------WG---LAP---------IREYLDAGITVGFGTTGSASNDGGNL--------------LGDLR 340 (456)
T ss_dssp HHHHHTT-----------CC---CCC---------HHHHHHTTCEEEECCCCTTSSCCCCH--------------HHHHH
T ss_pred hHHhhcC-----------CC---cch---------HHHHHHCCCcEEEECCCCccCCCCCH--------------HHHHH
Confidence 5432211 11 233 46688999999999998654322111 11333
Q ss_pred HHHHHHHHHhcC----CCCHHHHHHHHchhhhcC
Q 014320 397 MHLVWDTMVESG----QISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 397 l~~~~~~~~~~~----~l~l~~~v~~~t~npA~~ 426 (427)
+...+....... +++++++++++|.|||++
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~al~~~T~~~A~~ 374 (456)
T 3ls9_A 341 LAALAHRPADPNEPEKWLSARELLRMATRGSAEC 374 (456)
T ss_dssp HHHHHTGGGSTTCGGGSCCHHHHHHHTTHHHHHH
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHHH
Confidence 333221111111 799999999999999974
|
| >2i9u_A Cytosine/guanine deaminase related protein; protein structure initiative II (PSI-II), amidohydrol guanine deaminase; HET: GUN; 2.05A {Clostridium acetobutylicum} SCOP: b.92.1.4 c.1.9.9 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-28 Score=242.27 Aligned_cols=316 Identities=16% Similarity=0.083 Sum_probs=193.1
Q ss_pred CccEEEECcEEEcCCC-----ceeeeEEEeCCeEEEeeCCCCCC-CCceEEeCCCCEEeccccccccccccCcC-CC---
Q 014320 52 SSKILIKGGTVVNAHH-----QQIADVYVEDGIVVAVQPNINVG-DDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS--- 121 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~-----~~~~~i~i~~g~I~~vg~~~~~~-~~~~viD~~g~~v~PG~ID~H~H~~~~~~-g~--- 121 (427)
|.+++|+|++|++++. ..+++|+|+||||++||+....+ ++.++||++|++|+|||||+|+|+.++.. |.
T Consensus 8 m~~~li~~~~v~~~~~~~~~~~~~~~v~I~~g~I~~ig~~~~~~~~~~~viD~~G~~v~PGlID~H~H~~~~~~~g~~~~ 87 (439)
T 2i9u_A 8 INLKIFKGNLIFTKTSDKFTIMKDSYIVVIDGKIASVSSNLPDKYKGNPIIDFRNNIIIPGMNDLHAHASQYKNLGIGMD 87 (439)
T ss_dssp -CEEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEESSCCGGGTTSCEEEEEEEEEEECEEEEEEEGGGGGGTTCCCS
T ss_pred cccEEEEeeEEEecCCccceEEeccEEEEECCEEEEecccccccCCCceEEcCCCeEEEecceecccccchHhhhCCcCC
Confidence 5678999999999762 35789999999999999643221 34579999999999999999999986421 10
Q ss_pred -C-----------------ChhhHHHH----HHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceec---c
Q 014320 122 -E-----------------TIDDFFSG----QAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM---A 176 (427)
Q Consensus 122 -~-----------------~~e~~~~~----~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 176 (427)
. ++++++.. .+.++++||||++|+...........++...+.+.+..+...... +
T Consensus 88 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~~~~~~~p 167 (439)
T 2i9u_A 88 KELLPWLNNYTFPEEAKFLNVDYAKKTYGRLIKDLIKNGTTRVALFATLHKDSTIELFNMLIKSGIGAYVGKVNMDYNCP 167 (439)
T ss_dssp SCHHHHHHHTHHHHHHGGGSHHHHHHHHHHHHHHHHHTTEEEEEEECCSCHHHHHHHHHHHHHHTCEEEEECEECCSSCC
T ss_pred CCHHHHHHhcccchhhccCCHHHHHHHHHHHHHHHHhcCceEEEEccccccchHHHHHHHHHHcCCEEEEEeeeccccCC
Confidence 0 12233322 357899999999997532111233445555555544322211111 1
Q ss_pred --ccCCChhhHHHHHHHHHH--cCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecC-ChhhHHHHHHHHHHc
Q 014320 177 --ITKWDEVVSDEMEVMVKE--KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE-NGDAVFEGQKRMIEL 251 (427)
Q Consensus 177 --~~~~~~~~~~~~~~l~~~--~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e-~~~~~~~~~~~l~~~ 251 (427)
.....++..++..++++. .+...++++++++....++++.++++++.|+++|+++++|+. +..++....+ ..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~---~~ 244 (439)
T 2i9u_A 168 DYLTENYITSLNDTEEIILKYKDKSNIVKPIITPRFVPSCSNELMDGLGKLSYKYRLPVQSHLSENLDEIAVVKS---LH 244 (439)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHTTTCSSEEECBEECCGGGCCHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHHHH---HC
T ss_pred cccchhHHHHHHHHHHHHHHHhCCCCceEEEEecCCcCcCCHHHHHHHHHHHHhcCCcEEEeecCChHHHHHHHH---Hh
Confidence 001111234445555532 244567887777766678999999999999999999999984 4444433322 11
Q ss_pred CCCCcccccccCCHHHHHHHHHHHHHHHHhcC-CCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCC
Q 014320 252 GITGPEGHALSRPPLLEGEATTRAIRLAEFVN-TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSD 330 (427)
Q Consensus 252 G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g-~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~ 330 (427)
|. +|... . .+......+ .+..+.|+..... +.++.+++.|+.+ .+||++.+..
T Consensus 245 ~~---------~~~~~-----~-~~~~~g~~~~~~~~i~H~~~~~~-~~~~~l~~~g~~~--~~~p~~~~~l-------- 298 (439)
T 2i9u_A 245 KK---------SNFYG-----E-VYDKFGLFGNTPTLMAHCIHSSK-EEINLIKRNNVTI--VHCPTSNFNL-------- 298 (439)
T ss_dssp TT---------CSSHH-----H-HHHHTTCSSSSCEEEEECCSCCH-HHHHHHHHTTCEE--EECHHHHHHT--------
T ss_pred CC---------CCCHH-----H-HHHHcCCCCCCCeEEEEEecCCH-HHHHHHHHcCCEE--EECccchhhc--------
Confidence 21 11111 1 111112223 4566888776543 5677788888654 4588643210
Q ss_pred cccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHH-----
Q 014320 331 FVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV----- 405 (427)
Q Consensus 331 ~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~----- 405 (427)
+. ..|| +++++++|+++++|||+.+.. ..+ ++ .+.++...+.+..
T Consensus 299 ---~~---~~~~---------~~~~~~~Gv~~~lgtD~~~~~-~~~------~~--------~~~~~~~~~~~~~~~~~~ 348 (439)
T 2i9u_A 299 ---GS---GMMP---------VRKYLNLGINVVLGSDISAGH-TCS------LF--------KVIAYAIQNSKIKWQESG 348 (439)
T ss_dssp ---TC---CCCC---------HHHHHHTTCEEEECCCBTTBC-CSC------HH--------HHHHHHHHHHHHHHHHTT
T ss_pred ---cc---ccCC---------HHHHHHCCCcEEEecCCCCCC-CcC------HH--------HHHHHHHHHhcccccccc
Confidence 01 1344 456889999999999996522 111 11 1334444333322
Q ss_pred -hcCCCCHHHHHHHHchhhhcC
Q 014320 406 -ESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 406 -~~~~l~l~~~v~~~t~npA~~ 426 (427)
...++|++++++++|.|||++
T Consensus 349 ~~~~~ls~~~al~~~T~~~A~~ 370 (439)
T 2i9u_A 349 KKDMFLSTSEAFYMATKKGGSF 370 (439)
T ss_dssp SCSCCCCHHHHHHHHTHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHH
Confidence 246899999999999999985
|
| >2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.31A {Unidentified} PDB: 3mkv_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-29 Score=247.34 Aligned_cols=307 Identities=15% Similarity=0.147 Sum_probs=192.0
Q ss_pred CccEEEECcEEEcCCC---ceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCC-----CCC
Q 014320 52 SSKILIKGGTVVNAHH---QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG-----SET 123 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~---~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g-----~~~ 123 (427)
|.+++|+|++|+++.+ .++++|+|+||||++|++....+++.++||++|++|+|||||+|+|+...... ..+
T Consensus 3 m~~~~i~n~~i~~~~~~~~~~~~~i~i~~g~I~~i~~~~~~~~~~~~iD~~g~~v~PGliD~H~H~~~~~~~~~~~~~~~ 82 (426)
T 2r8c_A 3 LTTFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKSSNAHVIDVKGKTIMPGLIDLHVHVVAIEFNLPRVATLP 82 (426)
T ss_dssp -CEEEEEEEEECCTTSSSCEEEEEEEEESSBEEEEESSCCCCSSCEEEECTTCEEEECEEEEEECTTCCSSCHHHHHHSC
T ss_pred cccEEEEeeEEEeCCCCcccCCceEEEECCEEEEEcCCCCCCCCCeEEECCCCEEcCCeEeeeeccccccCCchhhccCC
Confidence 4578999999999864 35789999999999999864445678999999999999999999999876211 011
Q ss_pred hhhHH----HHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceece--------------------------
Q 014320 124 IDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGF-------------------------- 173 (427)
Q Consensus 124 ~e~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 173 (427)
.+... ...+.++++||||++|++.... ...+.++.....+++.......
T Consensus 83 ~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~-~l~~~i~~~~~~gpri~~~g~~i~~~~g~~~~~~~~~~~~~~~~~~~~ 161 (426)
T 2r8c_A 83 NVLVTLRAVPIMRAMLRRGFTTVRDAGGAGY-PFKQAVESGLVEGPRLFVSGRALSQTGGHADPRARSDYMPPDSPCGCC 161 (426)
T ss_dssp HHHHHHHHHHHHHHHHHTTEEEEEECSSCCH-HHHHHHHTTSSCCCEEEECCSEEECTTSTTCCCCCSSBCCCSCSSSSB
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeCCCchH-HHHHHHHcCCCCCCeEEecCCcccCCCCCccccccccccccccccccc
Confidence 22221 2345679999999999864321 2222222211112221110000
Q ss_pred -----eccccCCChhhHHHHHHHHHHcCCCeEEEEEe--------cCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhh
Q 014320 174 -----HMAITKWDEVVSDEMEVMVKEKGINSFKFFMA--------YKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA 240 (427)
Q Consensus 174 -----~~~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~--------~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~ 240 (427)
+.......++..+.++++. +.|++.+|++.+ +++.+.+++++++++++.|+++|+++++|+.+.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~v~~~~-~~g~~~ik~~~~G~~~~~~~p~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~ 240 (426)
T 2r8c_A 162 VRVGALGRVADGVDEVRRAVREEL-QMGADQIKIMASGGVASPTDPVGVFGYSEDEIRAIVAEAQGRGTYVLAHAYTPAA 240 (426)
T ss_dssp CCTTCCEEECCSHHHHHHHHHHHH-HHTCSSEEEECBCCSSSSSCCSSCBCSCHHHHHHHHHHHHHTTCCEEEEECSHHH
T ss_pred ccccccccccCCHHHHHHHHHHHH-HcCCCEEEEEecCCCCCCCCCcccccCCHHHHHHHHHHHHHcCCEEEEEeCChHH
Confidence 0011122344556667666 689999999986 33455789999999999999999999999986654
Q ss_pred HHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCcccee
Q 014320 241 VFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLV 320 (427)
Q Consensus 241 ~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~ 320 (427)
+... + +.|.. .+.|+...+. +.++++++.|+.+++...+...+
T Consensus 241 i~~a-------------------------------l----~~G~~-~i~H~~~~~~-~~~~~~~~~gv~~~pt~~~~~~~ 283 (426)
T 2r8c_A 241 IARA-------------------------------V----RCGVR-TIEHGNLIDD-ETARLVAEHGAYVVPTLVTYDAL 283 (426)
T ss_dssp HHHH-------------------------------H----HTTCS-EEEECTTCCH-HHHHHHHHTTCEEECCTHHHHHH
T ss_pred HHHH-------------------------------H----HcCCC-EEecCCcCCH-HHHHHHHHcCCeEeechHHHHHH
Confidence 4221 1 12333 4888877654 77888999998776543333222
Q ss_pred eCcccccCCCcccCceeEEcCCCCC--cccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHH
Q 014320 321 LDDSWLWHSDFVTAAKYVMSPPIRA--SGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMH 398 (427)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~pplr~--~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~ 398 (427)
+...... .+. .. .+..++. ......++++++.|+.+++|||+.+... .. ...+
T Consensus 284 ~~~~~~~--~~~--p~--~~~~~~~~~~~~~~~~~~~~~~Gv~v~lgTD~~~~~~-~~--------------~~~e---- 338 (426)
T 2r8c_A 284 ASEGEKY--GLP--PE--SIAKIADVHGAGLHSIEIMKRAGVKMGFGTDLLGEAQ-RL--------------QSDE---- 338 (426)
T ss_dssp HHHTTTT--TCC--HH--HHTTSTTTGGGHHHHHHHHHHTTCEECCCCCCCGGGG-GG--------------TTHH----
T ss_pred hhhcccc--CCC--HH--HHHHHHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCC-cc--------------hHHH----
Confidence 1111000 000 00 0001111 1235668889999999999999742211 10 0011
Q ss_pred HHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 399 LVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 399 ~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
+ ....+. +|+.++++++|.|||++
T Consensus 339 --~-~~~~~~-l~~~eal~~aT~~~A~~ 362 (426)
T 2r8c_A 339 --F-RILAEV-LSPAEVIASATIVSAEV 362 (426)
T ss_dssp --H-HHHTTT-SCHHHHHHHTTHHHHHH
T ss_pred --H-HHHHhc-CCHHHHHHHHHHHHHHH
Confidence 1 112333 99999999999999974
|
| >3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural GEN protein structure initiative, PSI; 2.63A {Unidentified} PDB: 3lwy_A* 3n2c_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-29 Score=249.04 Aligned_cols=303 Identities=17% Similarity=0.123 Sum_probs=189.0
Q ss_pred CccEEEECcEEEcCCC---ceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCC-----CCC
Q 014320 52 SSKILIKGGTVVNAHH---QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG-----SET 123 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~---~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g-----~~~ 123 (427)
|.+++|+|++|+++++ ..+++|+|+||||++|++....+.+.++||++|++|+|||||+|+|+...... ..+
T Consensus 3 ~~~~~i~n~~v~~~~~~~~~~~~~v~I~~g~I~~vg~~~~~~~~~~viD~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~ 82 (423)
T 3feq_A 3 LTITVLQGGNVLDLERGVLLEHHHVVIDGERIVEVTDRPVDLPNAQAIDVRGKTVMPGFIDCHVHVLASNANLGVNATQP 82 (423)
T ss_dssp -CEEEEEEEEEEETTTTEEEEEEEEEEETTEEEEEECSCCCCSSCEEEECTTCEEEECEEEEEECTTCCSSCHHHHHHSC
T ss_pred ceEEEEEccEEEeCCCCcccCCceEEEECCEEEEecCCCCCCCCCeEEeCCCCEECCCeeeeEeeecccCCChhhhhcCC
Confidence 5678999999999875 34789999999999999865555678999999999999999999999876210 011
Q ss_pred hhhH----HHHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceece--------------------------
Q 014320 124 IDDF----FSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGF-------------------------- 173 (427)
Q Consensus 124 ~e~~----~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 173 (427)
.+.. ....+.++++||||++|++.... ...+.++.....+++.......
T Consensus 83 ~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~-~l~~~~~~~~~~g~r~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 161 (423)
T 3feq_A 83 NILAAIRSLPILDAMLSRGFTSVRDAGGADW-SLMQAVETGLVSGPRIFPSGKALSQTGGHGDFRPRGDLLEPCSCCFRT 161 (423)
T ss_dssp HHHHHHTHHHHHHHHHHTTEEEEEECSSCCH-HHHHHHHTTSSCSCEEECCCSEEECTTSTTCCCCC---CCCCCSSCCT
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeCCCchH-HHHHHHHcCCCCCCeEEecCcccccCCCCccccccccccccccccccc
Confidence 1111 13345679999999999864321 2222222211112221111000
Q ss_pred --eccccCCChhhHHHHHHHHHHcCCCeEEEEEe--------cCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHH
Q 014320 174 --HMAITKWDEVVSDEMEVMVKEKGINSFKFFMA--------YKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFE 243 (427)
Q Consensus 174 --~~~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~--------~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~ 243 (427)
+.......++..+.++++. +.|++.+|++.+ +++...+++++++++++.|+++|+++++|+.+...+..
T Consensus 162 ~~~~~~~~~~~~~~~~v~~~~-~~g~~~ik~~~~g~~~~~~~p~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~i~~ 240 (423)
T 3feq_A 162 GAIARVVDGVEGVRLAVREEI-QKGATQIKIMASGGVASPTDPIANTQYSEDEIRAIVDEAEAANTYVMAHAYTGRAIAR 240 (423)
T ss_dssp TCSEEECCSHHHHHHHHHHHH-HTTCSSEEEECBCCSSSSSCCTTSBCSCHHHHHHHHHHHHHTTCCEEEEEEEHHHHHH
T ss_pred cccceecCCHHHHHHHHHHHH-HcCCCEEEEeccCCcCCCCCCcccccCCHHHHHHHHHHHHHCCCeEEEEeCChHHHHH
Confidence 0011122244455666666 689999999986 34556789999999999999999999999976544322
Q ss_pred HHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCc
Q 014320 244 GQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDD 323 (427)
Q Consensus 244 ~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~ 323 (427)
. ++ .|.. .+.|+...+. +.++++++.|+.+++...+...++..
T Consensus 241 ~-------------------------------l~----~g~~-~i~H~~~~~~-~~~~~l~~~gv~~~pt~~~~~~~~~~ 283 (423)
T 3feq_A 241 A-------------------------------VR----CGVR-TIEHGNLVDE-AAAKLMHEHGAFVVPTLVTYDALAKH 283 (423)
T ss_dssp H-------------------------------HH----HTCC-EEEEEEECCH-HHHHHHHHHTCEEECCTHHHHHHHHH
T ss_pred H-------------------------------HH----cCCC-EEeccCcCCH-HHHHHHHHCCCccccchHHHHHHHhc
Confidence 2 11 2332 4677665443 66788888898775533232221111
Q ss_pred ccccCCCcccCceeEEcCCCCCc------ccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhH
Q 014320 324 SWLWHSDFVTAAKYVMSPPIRAS------GHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERM 397 (427)
Q Consensus 324 ~~~~~~~~~~~~~~~~~pplr~~------~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l 397 (427)
.. .....|..+.+ .....++.+++.|+.+++|||+.+. .... ...+..
T Consensus 284 ~~----------~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~gTD~~~~-~~~~--------------~~~e~~- 337 (423)
T 3feq_A 284 GA----------EFGMPPESVAKVASVQQKGRESLEIYANAGVKMGFGSDLLGE-MHAF--------------QSGEFR- 337 (423)
T ss_dssp TG----------GGTCCTTTSSTHHHHHHHHHHHHHHHHHHTCCBCCCCCCCGG-GGGG--------------TTHHHH-
T ss_pred cc----------ccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCC-CCcc--------------hHHHHH-
Confidence 10 00011211111 1345578889999999999997421 1100 001211
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 398 HLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 398 ~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
...+. +|+.++++++|.|||++
T Consensus 338 ------~~~~~-ls~~eal~~aT~~~A~~ 359 (423)
T 3feq_A 338 ------IRAEV-LGNLEALRSATTVAAEI 359 (423)
T ss_dssp ------HHHTT-SCHHHHHHTTTHHHHHH
T ss_pred ------HHHhh-CCHHHHHHHHHHHHHHH
Confidence 12334 99999999999999974
|
| >1e9y_B Urease subunit beta; hydrolase, dodecamer; HET: KCX; 3.00A {Helicobacter pylori} SCOP: b.92.1.1 c.1.9.2 PDB: 1e9z_B* 3qga_C* 3qgk_C* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.6e-29 Score=250.96 Aligned_cols=311 Identities=15% Similarity=0.147 Sum_probs=198.4
Q ss_pred CccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCC------------CCCceEEeCCCCEEeccccccccccccCcC
Q 014320 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~------------~~~~~viD~~g~~v~PG~ID~H~H~~~~~~ 119 (427)
..+++|+|++|+++.+..+++|+|+||||++||+.... .++.++||++|++|+|||||+|+|+..+
T Consensus 65 ~~dllI~n~~Vid~~gi~~~dI~I~dGrI~~IG~~~~~~~~~~~~~~~~~~~~~evIDa~G~iV~PGlID~HvHl~~p-- 142 (569)
T 1e9y_B 65 ELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGGIDTHIHFISP-- 142 (569)
T ss_dssp CCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECCBCTTTSSSCCGGGBCCTTCEEEECTTCEEEECEEEEEEETTCT--
T ss_pred cCCEEEEeeEEECCCCcEeeeEEEECCEEEEeecCCCccccccccccccCCCCCeEEECCCCEEecCEEEEeecCCCc--
Confidence 45799999999997666678999999999999975321 2356899999999999999999998765
Q ss_pred CCCChhhHHHHHHHHHcCCceEEecCcCCCC------C--cHHHHHHHHHHHhccccceeceeccccCCChhhHHHHHHH
Q 014320 120 GSETIDDFFSGQAAALAGGTTMHIDFVIPIN------G--SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM 191 (427)
Q Consensus 120 g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 191 (427)
+ ..++++++||||++|++..+. . .....++...+......+++++.+... ....++++++
T Consensus 143 ~---------~~~~al~~GvTTv~d~g~~p~~~t~~~~~~~g~~~l~~~~~a~~~~~~~~~~~g~g~---~~~~~~l~e~ 210 (569)
T 1e9y_B 143 Q---------QIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEYSMNLGFLAKGN---ASNDASLADQ 210 (569)
T ss_dssp T---------HHHHHHHTTEEEEEEECCSSCHHHHHCCCCCHHHHHHHHHHHHTTSSSEEEEEEECC---CSCHHHHHHH
T ss_pred H---------HHHHHHhCCeeEEEcCCcCCCCCCcCcccCCcHHHHHHHHHHhcccCceEEEECCCC---cCCHHHHHHH
Confidence 2 157899999999999853211 0 123445555555555556665543211 1234567777
Q ss_pred HHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHH
Q 014320 192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEA 271 (427)
Q Consensus 192 ~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a 271 (427)
+ +.|+.++|++..+ ..+++.++++++.|+++|+++++|+++..+. |.
T Consensus 211 ~-~~Ga~gik~~~~~----~~t~e~l~~~l~~A~~~g~~V~iHa~~~~e~----------g~------------------ 257 (569)
T 1e9y_B 211 I-EAGAIGFKIHEDW----GTTPSAINHALDVADKYDVQVAIHTDTLNEA----------GC------------------ 257 (569)
T ss_dssp H-HTTCSEEEECGGG----CCCHHHHHHHHHHHHHTTCEEEECCCTTCSS----------CC------------------
T ss_pred H-HcCCCEEEecCCC----CCCHHHHHHHHHHHHHhCCEEEEEcCCcccc----------hH------------------
Confidence 7 6888899887643 3689999999999999999999999753211 00
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCHHH---HHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccC-ceeEEcCCC----
Q 014320 272 TTRAIRLAEFVNTPLYVVHVMSMDA---MEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTA-AKYVMSPPI---- 343 (427)
Q Consensus 272 ~~~~~~~~~~~g~~~~i~H~~~~~~---~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~-~~~~~~ppl---- 343 (427)
+.+. ++...|.++|++|++.... .+.++.+++.|+ .+..+++++.++.+...+ .++.- ......+++
T Consensus 258 ~~~~--la~~~g~~~hi~H~~~~~~~~~~d~I~~~~~~gv--~~~~~~ptl~~t~~~~~~-~~d~~~v~h~l~~~~~ed~ 332 (569)
T 1e9y_B 258 VEDT--MAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNI--LPASTNPTIPFTVNTEAE-HMDMLMVCHHKDKSIKEDV 332 (569)
T ss_dssp HHHH--HHHHTTCCEEETTTTSTTSCSTTTGGGGGGSTTE--EEEECGGGCSCBTTHHHH-HHHHHHHTTTCCSSCHHHH
T ss_pred HHHH--HHHHcCCCEEEEEcccCcccccHHHHHHHHHcCC--eeEeeCCccccccchhhh-hhchhhhhhhcCcccHHHH
Confidence 0111 1234678999999987642 478888888885 333344444333221100 00000 000112222
Q ss_pred -----CCcccHHHHHHHHh-cCCceEEecCCCCCChhh-hhcCCCCCcc------CCCCCchhhHhHHHHHHHHHhcCCC
Q 014320 344 -----RASGHNKALQAALA-TGILQLVGTDHCAFNSTQ-KAFGIDDFRK------IPNGVNGIEERMHLVWDTMVESGQI 410 (427)
Q Consensus 344 -----r~~~~~~~l~~~l~-~G~~~~lgSD~~p~~~~~-~~~~~~~~~~------~~~G~~~~e~~l~~~~~~~~~~~~l 410 (427)
|.+.++.++|+.+. .|+++++||||.|++... ... +.|. ...|..+.+ ...+.++
T Consensus 333 ~~~~~rlr~~~~a~~~~L~d~Gv~v~iGSD~~~~~~~g~~~~---~~~~~~~~~~~~~G~l~~~---------~~~~~~l 400 (569)
T 1e9y_B 333 QFADSRIRPQTIAAEDTLHDMGAFSITSSDSQAMGRVGEVIT---RTWQTADKNKKEFGRLKEE---------KGDNDNF 400 (569)
T ss_dssp HHHHHHCCHHHHHHHHHHHHTTSCCEECCCTTSSCCTTSHHH---HHHHHHHHHHHHHCSCSSC---------CSSSCHH
T ss_pred HHhhcchhhhHHHHHHHHHhCCCEEEEeCCCCccCccccccc---chhhHHHHhHhhccCcchh---------hccccCC
Confidence 12245778888887 699999999998865310 000 0000 000000000 0124568
Q ss_pred CHHHHHHHHchhhhcC
Q 014320 411 SVTDYVRLTSTEWGRL 426 (427)
Q Consensus 411 ~l~~~v~~~t~npA~~ 426 (427)
++.++++++|.|||++
T Consensus 401 s~~~al~~~T~npA~~ 416 (569)
T 1e9y_B 401 RIKRYLSKYTINPAIA 416 (569)
T ss_dssp HHHHHHGGGTHHHHHH
T ss_pred CHHHHHHHHhHHHHHH
Confidence 9999999999999974
|
| >2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine, structural genomics, protein structure initiative; HET: GUN; 2.62A {Bradyrhizobium japonicum} SCOP: b.92.1.4 c.1.9.9 | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-28 Score=244.47 Aligned_cols=323 Identities=15% Similarity=0.073 Sum_probs=193.3
Q ss_pred ccEEEECcEEEcCCC---------------ceeeeEEEeCCeEEEeeCCCCCC---CCceEEeCCCCEEecccccccccc
Q 014320 53 SKILIKGGTVVNAHH---------------QQIADVYVEDGIVVAVQPNINVG---DDVKVLDATGKFVMPGGIDPHTHL 114 (427)
Q Consensus 53 ~~~~i~~~~i~~~~~---------------~~~~~i~i~~g~I~~vg~~~~~~---~~~~viD~~g~~v~PG~ID~H~H~ 114 (427)
..++|.+++|+++.+ ..+++|+|+||||++||+..+.+ ++.++||++|++|+|||||+|+|+
T Consensus 3 ~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~V~I~~G~I~~Vg~~~~~~~~~~~~~viD~~G~~v~PG~ID~H~Hl 82 (475)
T 2ood_A 3 LTTVGIRGTFFDFVDDPWKHIGNEQAAARFHQDGLMVVTDGVIKAFGPYEKIAAAHPGVEITHIKDRIIVPGFIDGHIHL 82 (475)
T ss_dssp CCEEEEEEEEEEESSCGGGSTTCGGGGEEEEEEEEEEEESSBEEEEEEHHHHHHHSTTCEEEEEEEEEEEECEEEEEEEG
T ss_pred ccceEEEEEEEecCCccccccccCCCcceEEECCEEEEECCEEEEEeChhhhccccCCCeEEeCCCcEEecceecCcccH
Confidence 446788999998644 25789999999999999753211 346899999999999999999998
Q ss_pred ccCcC----CCC-----------------ChhhH----HHHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccc
Q 014320 115 AMEFM----GSE-----------------TIDDF----FSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCM 169 (427)
Q Consensus 115 ~~~~~----g~~-----------------~~e~~----~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (427)
.+... +.. +++++ ....+.++++||||++|+...........++..++.+.+..+
T Consensus 83 ~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~g~r~~~ 162 (475)
T 2ood_A 83 PQTRVLGAYGEQLLPWLQKSIYPEEIKYKDRNYAREGVKRFLDALLAAGTTTCQAFTSSSPVATEELFEEASRRNMRVIA 162 (475)
T ss_dssp GGTTCTTCCSCCHHHHHHHHTHHHHGGGGSHHHHHHHHHHHHHHHHHTTEEEEEEECCSSHHHHHHHHHHHHHHTCCEEE
T ss_pred HhHhhcCCCCCCHHHHHHHhccchhhccCCHHHHHHHHHHHHHHHHhcCceEEEEecccCchhHHHHHHHHHHcCCeEEE
Confidence 65421 110 23333 334677899999999997532111122333444444444321
Q ss_pred eeceec---c--ccCCChhhHHHHHHHHHH-cCCCeEEEEEecCCCccCCHHHHHHHHHHHHHc-CCcEEEecC-ChhhH
Q 014320 170 DYGFHM---A--ITKWDEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSL-GALAMVHAE-NGDAV 241 (427)
Q Consensus 170 ~~~~~~---~--~~~~~~~~~~~~~~l~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~-g~~v~~H~e-~~~~~ 241 (427)
...... + .....++.++++.++.+. .+...+++++++++.+.++++.++++++.|+++ |+++++|+. +..++
T Consensus 163 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~a~~~~g~~v~~H~~e~~~~~ 242 (475)
T 2ood_A 163 GLTGIDRNAPAEFIDTPENFYRDSKRLIAQYHDKGRNLYAITPRFAFGASPELLKACQRLKHEHPDCWVNTHISENPAEC 242 (475)
T ss_dssp CCEECCSSSCTTTCCCHHHHHHHHHHHHHHHTTBTTEEEEEEECBGGGCCHHHHHHHHHHHHHCTTSEEEEECSCCHHHH
T ss_pred EeeecccCCCcccccCHHHHHHHHHHHHHHhccCCceEEEEeccccCcCCHHHHHHHHHHHHhCCCCcEEEeeCCChHHH
Confidence 111111 0 011122344555555542 345568888888888889999999999999999 999999984 55444
Q ss_pred HHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceee
Q 014320 242 FEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVL 321 (427)
Q Consensus 242 ~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~ 321 (427)
....+ ..|.. +. ....++.....+.+..+.|+..... +.++++++.|+.+. .||++...
T Consensus 243 ~~~~~---~~g~~--------~~-------~~~~~~~~g~~~~~~~i~H~~~~~~-~~i~~~~~~g~~~~--~~P~~~~~ 301 (475)
T 2ood_A 243 SGVLV---EHPDC--------QD-------YLGVYEKFDLVGPKFSGGHGVYLSN-NEFRRMSKKGAAVV--FCPCSNLF 301 (475)
T ss_dssp HHHHH---HCTTC--------SS-------HHHHHHTTTCCSTTEEEECCTTCCH-HHHHHHHHHTCEEE--ECHHHHHH
T ss_pred HHHHH---HcCCC--------cc-------HHHHHHHcCCCCCCcEEEEeecCCH-HHHHHHHHcCCEEE--EChhhhhh
Confidence 43322 11210 00 0011111122456777889877654 66888888886544 58864321
Q ss_pred CcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCc--eEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHH
Q 014320 322 DDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGIL--QLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHL 399 (427)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~--~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~ 399 (427)
+ +. ..+| ++++++.|++ +++||||.++....- +.....++ ..+..++.
T Consensus 302 ----l-------~~---~~~~---------~~~~~~~Gv~~~~~lgTD~~~~~~~~~------~~~~~~~~-~~~~~~~~ 351 (475)
T 2ood_A 302 ----L-------GS---GLFR---------LGRATDPEHRVKMSFGTDVGGGNRFSM------ISVLDDAY-KVGMCNNT 351 (475)
T ss_dssp ----T-------TC---CCCC---------HHHHTCTTSCCEEEECCCBTTBSCCCH------HHHHHHHH-HHHHHHHH
T ss_pred ----c-------cc---CcCC---------HHHHHhCCCCCcEEEEccCCCCCCcCH------HHHHHHHH-HHhcccch
Confidence 1 01 1344 4679999999 999999976332110 00000000 00100111
Q ss_pred HHH----------HHHhcCCCCHHHHHHHHchhhhcC
Q 014320 400 VWD----------TMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 400 ~~~----------~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
++. ....+.+++++++++++|.|||++
T Consensus 352 ~~~~~~~p~~~~~~~~~~~~ls~~~al~~~T~~~A~~ 388 (475)
T 2ood_A 352 LLDGSIDPSRKDLAEAERNKLSPYRGFWSVTLGGAEG 388 (475)
T ss_dssp HSSSSSCGGGCCHHHHHHTCCCHHHHHHHTTHHHHHH
T ss_pred hccCCcccccccccccccCCCCHHHHHHHHHHHHHHH
Confidence 110 001126899999999999999974
|
| >3be7_A Zn-dependent arginine carboxypeptidase; unknown source, amidohydrolase, sargasso SEA, structural GEN protein structure initiative, PSI; HET: ARG; 2.30A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=234.35 Aligned_cols=303 Identities=17% Similarity=0.130 Sum_probs=184.6
Q ss_pred CCCccEEEECcEEEcCCC--ceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCC------
Q 014320 50 QSSSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS------ 121 (427)
Q Consensus 50 ~~~~~~~i~~~~i~~~~~--~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~------ 121 (427)
.|+.+++|+|++|+++++ ...++|+|+||||++|++. .+.+.++||++|++|+|||||+|+|+. .....
T Consensus 3 ~~~~~~~i~n~~v~~~~~~~~~~~~v~I~~g~I~~ig~~--~~~~~~viD~~g~~v~PGlID~H~H~~-~~~~~~~~~~~ 79 (408)
T 3be7_A 3 LTSEDFLIKSKGYLDIQTGEIIKADLLIRNGKIAEIGKI--NTKDATVISIPDLILIPGLMDSHVHIV-GNDSKGEESIA 79 (408)
T ss_dssp --CCCEEEEEEEEECTTTCCEECCEEEEETTEEEEEECC--CCSSSEEEEEEEEEEEECEEEEEECCS-SCCCCSGGGTT
T ss_pred cccceEEEEeeEEEeCCCCceeeeEEEEECCEEEEEeCC--CCCCCeEEECCCCEECcCceeeeEccc-CCCCcchhhhc
Confidence 345689999999999775 3348999999999999986 234568999999999999999999997 31100
Q ss_pred CChhhHH----HHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhc----ccc-----c-eeceeccccCC-------
Q 014320 122 ETIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK----NSC-----M-DYGFHMAITKW------- 180 (427)
Q Consensus 122 ~~~e~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~----~~~-----~-~~~~~~~~~~~------- 180 (427)
.+++... ..++.++++||||++|+..... ....++...+.+. +.. + ..+.+......
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~--~~~~~~~~~~~~~~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~ 157 (408)
T 3be7_A 80 DSSHMGTVWGVVNAEKTLMAGFTTVRNVGAANY--ADVSVRDAIERGVINGPTMLVSGPALGITGGHCDHNLLPPEFNYS 157 (408)
T ss_dssp CCTHHHHHHHHHHHHHHHTTTEEEEEECCCSTT--HHHHHHHHHHTTSSCCCEEEECCSCBBCTTSTTSCCCSCTTTCCC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEeCCCccc--cCHHHHHHHHCCCCCCCEEEEccceeeccCCCCcccccccccccc
Confidence 1222221 2467789999999999864321 2223444333332 110 0 01111100000
Q ss_pred ---ChhhHHHHHHHHH---HcCCCeEEEEEecC--------CCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHH
Q 014320 181 ---DEVVSDEMEVMVK---EKGINSFKFFMAYK--------GSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQK 246 (427)
Q Consensus 181 ---~~~~~~~~~~l~~---~~g~~~ik~~~~~~--------~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~ 246 (427)
.....++++++++ ..|.+.+|++.+.. +.+.+++++++++++.|+++|+++.+|+.+...+...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~g~~~~~~~~~g~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~i~~~-- 235 (408)
T 3be7_A 158 SEGVVDSPWEARKMVRKNRKYGADLIKFCATGGVMSRNTDVNAKQFTLEEMKAIVDEAHNHGMKVAAHAHGLIGIKAA-- 235 (408)
T ss_dssp CTTBCCSHHHHHHHHHHHHHTTCSEEEEECBCCSSSSSCCTTSBCSCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHH--
T ss_pred CCcccCCHHHHHHHHHHHHhcCCCEEEEEecCCcCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH--
Confidence 0112233333321 46888999986431 2456789999999999999999999999775443211
Q ss_pred HHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccc
Q 014320 247 RMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWL 326 (427)
Q Consensus 247 ~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~ 326 (427)
+ +.|+. .+.|+..... +.++++++.|+.++++..+.. .+
T Consensus 236 -----------------------------~----~~g~~-~i~H~~~~~~-~~i~~~~~~g~~v~~~~~~~~------~~ 274 (408)
T 3be7_A 236 -----------------------------I----KAGVD-SVEHASFIDD-ETIDMAIKNNTVLSMDIFVSD------YI 274 (408)
T ss_dssp -----------------------------H----HHTCS-EEEECTTCCH-HHHHHHHHTTCEEECCCSTHH------HH
T ss_pred -----------------------------H----HcCCC-EEEECCCCCH-HHHHHHHHCCCEEeeeecHHH------Hh
Confidence 1 12333 4888877653 778889999976643221110 00
Q ss_pred cCCCcccCceeEEcCCCCCc------ccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHH
Q 014320 327 WHSDFVTAAKYVMSPPIRAS------GHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLV 400 (427)
Q Consensus 327 ~~~~~~~~~~~~~~pplr~~------~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~ 400 (427)
.... ....+.|+++.+ .++..+++++++|+.+++|||+.+ .+ .|....+..+
T Consensus 275 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~gTD~~~-~p--------------~~~~~~~~~~--- 332 (408)
T 3be7_A 275 LGEG----AKAGIREESLNKERLVGKKQRENFMNAHRRGAIITFGTDAGI-FD--------------HGDNAKQFAY--- 332 (408)
T ss_dssp HTTT----TTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTCCEECCCCBTT-BC--------------TTCGGGHHHH---
T ss_pred hhhc----cccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC-CC--------------CchHHHHHHH---
Confidence 0000 000112222211 124678899999999999999843 11 1222223221
Q ss_pred HHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 401 WDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 401 ~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
+++. ++|++++++++|.|||++
T Consensus 333 ---~~~~-gls~~~al~~~T~n~A~~ 354 (408)
T 3be7_A 333 ---MVEW-GMTPLEAIQASTIKTATL 354 (408)
T ss_dssp ---HHHT-TCCHHHHHHTTTHHHHHH
T ss_pred ---HHHc-CCCHHHHHHHHHHHHHHH
Confidence 2333 799999999999999974
|
| >1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer, conformation change, D314G mutant, hydrolase; 1.12A {Escherichia coli} SCOP: b.92.1.2 c.1.9.5 PDB: 1r9x_A 1ra5_A 1r9y_A 1r9z_A 1rak_A 3r0d_A* 3o7u_A* 3rn6_A* 1k6w_A 1k70_A 3g77_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-28 Score=242.33 Aligned_cols=315 Identities=16% Similarity=0.095 Sum_probs=184.7
Q ss_pred CccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCC-CCceEEeCCCCEEeccccccccccccCcC-CC--------
Q 014320 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVG-DDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS-------- 121 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~-~~~~viD~~g~~v~PG~ID~H~H~~~~~~-g~-------- 121 (427)
+.+++|+|++|++++ ..++|+|+||||++||+..+.+ ++.++||++|++|+|||||+|+|+..... +.
T Consensus 7 ~~~~li~n~~v~~~~--~~~~v~I~~g~I~~vg~~~~~~~~~~~viD~~G~~v~PGlID~H~Hl~~~~~~~~~~~~~~~~ 84 (430)
T 1ra0_A 7 NALQTIINARLPGEE--GLWQIHLQDGKISAIDAQSGVMPITENSLDAEQGLVIPPFVEPHIHLDTTQTAGQPNWNQSGT 84 (430)
T ss_dssp -CCCEEEEEBCTTCC--SEEEEEEETTEEEEEEEESSCCCCCTTEEECTTCEEESCEEEEEECTTTTTCTTSSSCCSSCC
T ss_pred CCcEEEEeeEecCCC--ceeEEEEECCEEEEeecCCCCCCCCcceEccCCCEecccccccccchhhhhhcCCCcCCCCCC
Confidence 457899999999976 6789999999999999765432 45689999999999999999999976421 10
Q ss_pred --------------CChhhHHHHH----HHHHcCCceEEecCcCCCCCcHHHHHHHHHHHh--ccccceeceec-cc--c
Q 014320 122 --------------ETIDDFFSGQ----AAALAGGTTMHIDFVIPINGSLTAGFEAYEKKA--KNSCMDYGFHM-AI--T 178 (427)
Q Consensus 122 --------------~~~e~~~~~~----~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~--~ 178 (427)
.++++++..+ +.++++||||++|+....... ...++...+.. .+..+++.+.. .. .
T Consensus 85 ~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (430)
T 1ra0_A 85 LFEGIERWAERKALLTHDDVKQRAWQTLKWQIANGIQHVRTHVDVSDAT-LTALKAMLEVKQEVAPWIDLQIVAFPQEGI 163 (430)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTEEEEEEEEECCSTT-CHHHHHHHHHHHHHTTTCEEEEEEECTTCS
T ss_pred HHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHhcCccEEeeccccCChH-HHHHHHHHHHHHhhhhhEEEEEEecCCccc
Confidence 1335554443 445799999999986431111 11222222211 13334433221 10 0
Q ss_pred CCChhhHHHHHHHHHHcCCCeEEEEEecCCCcc--CCHHHHHHHHHHHHHcCCcEEEecC-ChhhHHHHHHHHHHcCCCC
Q 014320 179 KWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM--INDELLIEGFKRCKSLGALAMVHAE-NGDAVFEGQKRMIELGITG 255 (427)
Q Consensus 179 ~~~~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~--~~~~~l~~~~~~a~~~g~~v~~H~e-~~~~~~~~~~~l~~~G~~~ 255 (427)
...++..+.++++. +.|...+.. . ++.++. ++++.++++++.|+++|+++++|+. .........+
T Consensus 164 ~~~~~~~~~~~~~~-~~g~~~~~~-~-~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~--------- 231 (430)
T 1ra0_A 164 LSYPNGEALLEEAL-RLGADVVGA-I-PHFEFTREYGVESLHKTFALAQKYDRLIDVHCDEIDDEQSRFVE--------- 231 (430)
T ss_dssp SSSTTHHHHHHHHH-HTTCSEECC-C-GGGSSSHHHHHHHHHHHHHHHHHHTCEEEEEECCSSCTTCCHHH---------
T ss_pred ccCchHHHHHHHHH-HhCCCeEee-e-ecccccccccHHHHHHHHHHHHHcCCCEEEEECCCCchhHHHHH---------
Confidence 01223344466665 455544422 1 333333 6889999999999999999999984 4433211111
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHH------HHHHHHhhcCCCEEEecCccce-eeCcccccC
Q 014320 256 PEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAM------EEIAKARKAGQRVIGEPVVSGL-VLDDSWLWH 328 (427)
Q Consensus 256 ~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~------~~i~~~~~~G~~v~~~~~p~~l-~~~~~~~~~ 328 (427)
.+.+.+..... +.+.++.|+...... +.++++++.|+.+. +||+.. .+... .
T Consensus 232 ---------------~~~~~~~~~g~-~~~~~i~H~~~~~~~~~~~~~~~i~~~~~~gv~v~--~~p~~~~~~~~~-~-- 290 (430)
T 1ra0_A 232 ---------------TVAALAHHEGM-GARVTASHTTAMHSYNGAYTSRLFRLLKMSGINFV--ANPLVNIHLQGR-F-- 290 (430)
T ss_dssp ---------------HHHHHHHHHTC-GGGEEEEECGGGGGSCHHHHHHHHHHHHHHTCEEE--ECHHHHHHHTTT-T--
T ss_pred ---------------HHHHHHHHhCC-CCCEEEEeccccccCChHhHHHHHHHHHHcCCEEE--ECchhhhhhccc-c--
Confidence 01111111111 456888898765432 47888999997655 577532 22110 0
Q ss_pred CCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcC
Q 014320 329 SDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESG 408 (427)
Q Consensus 329 ~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~ 408 (427)
...|+.+.... ++++++.|+++++||||.+...... ...-.-.+..++..+... ..
T Consensus 291 ---------~~~p~~~~~~~---~~~~~~~Gv~~~lgTD~~~~~~~~~----------~~~~~~~~~~~~~~~~~~--~~ 346 (430)
T 1ra0_A 291 ---------DTYPKRRGITR---VKEMLESGINVCFGHDGVFDPWYPL----------GTANMLQVLHMGLHVCQL--MG 346 (430)
T ss_dssp ---------CCSSCCCCCCC---HHHHHHTTCCEEECCBCSSBTTBSC----------CCCCHHHHHHHHHHHTTC--CS
T ss_pred ---------CCCCCcCCCCC---HHHHHHCCCEEEEeCCCCcccCCCC----------CCCCHHHHHHHHHHHHcc--CC
Confidence 01355544332 6778899999999999963111000 000011233333332111 12
Q ss_pred CCCHHHHHHHHchhhhcC
Q 014320 409 QISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 409 ~l~l~~~v~~~t~npA~~ 426 (427)
+++++++++++|.|||++
T Consensus 347 ~~~~~~al~~~T~~~A~~ 364 (430)
T 1ra0_A 347 YGQINDGLNLITHHSART 364 (430)
T ss_dssp HHHHHGGGGGGTHHHHHH
T ss_pred cccHHHHHHHHHHHHHHH
Confidence 369999999999999974
|
| >2p9b_A Possible prolidase; protein structure initiative II, PSI-2, amidohydrolase, structural genomics; 1.70A {Bifidobacterium longum NCC2705} SCOP: b.92.1.10 c.1.9.17 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=238.16 Aligned_cols=311 Identities=17% Similarity=0.136 Sum_probs=186.4
Q ss_pred CccEEEECcEEEcCCC---ceeeeEEE-eCCeEEEeeC--CCCCCCCceEEeCCCCEEeccccccccccccCcCCCC---
Q 014320 52 SSKILIKGGTVVNAHH---QQIADVYV-EDGIVVAVQP--NINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSE--- 122 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~---~~~~~i~i-~~g~I~~vg~--~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~--- 122 (427)
..+++|+|++|++++. ..+++|+| +||||++||+ ....+.+.++||++|++|+|||||+|+|+..+.....
T Consensus 12 ~~~~li~n~~i~~~~~~~~~~~~~v~I~~~g~I~~Vg~~~~~~~~~~~~viD~~G~~v~PG~ID~H~H~~~~~~~~~~~~ 91 (458)
T 2p9b_A 12 EPFALAHATIVTGDKAGTILRNMTIVVGADGRIEQVAPSIETSIPAEYHYLDGTGKIVMPGLINAHTHLFSQGKPLNPKL 91 (458)
T ss_dssp CCEEEEEEEEECCCTTCCEEEEEEEEECTTSBEEEEEEGGGCCCCTTCEEEECTTCEEEECEEEEEECSCC---------
T ss_pred CCcEEEEeeEEEeCCCCccccCcEEEEecCCEEEEEeccccCCCCCCCeEEECCCCEEccceeeeeeccccccccccccc
Confidence 3568999999999764 24689999 9999999997 4333345689999999999999999999987621100
Q ss_pred ------------Ch---------hhHHHHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceec-------ee
Q 014320 123 ------------TI---------DDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYG-------FH 174 (427)
Q Consensus 123 ------------~~---------e~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 174 (427)
.. ..+...++.++++||||++|+..... ....++...+.+......+. ..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~--~~~~~~~~~~~g~~~g~r~~~~g~~~~~~ 169 (458)
T 2p9b_A 92 ATPKGQRMVATFAHSPLGKPYMAATVKHNATTLLESGVTTIRTLGDVGY--EVVTLRDQIDAGQILGPRILASGPLMAIP 169 (458)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTEEEEEESCCSSS--HHHHHHHHHHTTSSCCCEEECCCSCEECC
T ss_pred cchhhhhhhhhhhhhcccccHHHHHHHHHHHHHHHcCCcEEEeCCCCcc--ccHHHHHHHHcCCCCCCeEEecccccccC
Confidence 01 12344678889999999999854321 22334433333321001110 00
Q ss_pred cccc--------CCChhhHHHHHHHHHHcCCCeEEEEEec-----C-----CCccCCHHHHHHHHHHHHHcCCcEEEecC
Q 014320 175 MAIT--------KWDEVVSDEMEVMVKEKGINSFKFFMAY-----K-----GSFMINDELLIEGFKRCKSLGALAMVHAE 236 (427)
Q Consensus 175 ~~~~--------~~~~~~~~~~~~l~~~~g~~~ik~~~~~-----~-----~~~~~~~~~l~~~~~~a~~~g~~v~~H~e 236 (427)
+... ...++..+.++++. +.|.+.+|++.+. . +.+.++++.++++++.|+++|+++++|++
T Consensus 170 g~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~ik~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~ 248 (458)
T 2p9b_A 170 EGHGAPLIALTSGTPEEARTAVAQNL-KAGVNAIKIAATGGVTDAQEIGEAGSPQMSVEQMRAICDEAHQYGVIVGAHAQ 248 (458)
T ss_dssp CSSCCCCEECCSCCHHHHHHHHHHHH-HTTCSCEEEECSCCTTSCCCC------CCCHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCccccCccCCCHHHHHHHHHHHH-HcCCCEEEEEecCCcCCCCccCCCCCCcCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 1000 11122233344444 5788899998752 1 23467899999999999999999999998
Q ss_pred ChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHh------hcCCCE
Q 014320 237 NGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKAR------KAGQRV 310 (427)
Q Consensus 237 ~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~------~~G~~v 310 (427)
+...+... + ..|.. .+.|+..... +.+++++ +.|+.+
T Consensus 249 ~~~~i~~~-------------------------------~----~~G~~-~i~H~~~~~~-~~~~~~~~~~~~~~~g~~v 291 (458)
T 2p9b_A 249 SPEGVRRS-------------------------------L----LAGVD-TIEHGSVLDD-ELIGMFRHNPNALRGYSAL 291 (458)
T ss_dssp SHHHHHHH-------------------------------H----HHTCS-EEEECCCCCH-HHHHHHHCCTTSTTSCCEE
T ss_pred CHHHHHHH-------------------------------H----HcCCC-EEEECCCCCH-HHHHHHhcccccccCCeEE
Confidence 76443221 1 12332 4778766543 5678888 889765
Q ss_pred EEecCccc--eeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCC
Q 014320 311 IGEPVVSG--LVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPN 388 (427)
Q Consensus 311 ~~~~~p~~--l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~ 388 (427)
.+...|.. +++..... ++. ......+|.+...+...+++++++|+++++|||+.+ .. .+.
T Consensus 292 ~p~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~gtD~~~-~~------------~~~ 353 (458)
T 2p9b_A 292 IPTLSAGLPLTLLGQDVT---GIT--DIQLENSKNVVGGMVSGARQAHEAGLMIGVGTDTGM-TF------------VPQ 353 (458)
T ss_dssp ECCHHHHHHHHHSCHHHH---CCC--HHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCCCTTS-TT------------SCT
T ss_pred EeecchhhHHHhhhcccc---cCC--HHHHHHHHHHHHHHHHHHHHHHHCCCeEEEecCCCC-CC------------Ccc
Confidence 43322211 11111000 000 000011233334456788999999999999999732 11 122
Q ss_pred CCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 389 GVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 389 G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
|....+.+ .+++..++|++++++++|.|||++
T Consensus 354 ~~~~~e~~------~~~~~~~ls~~~al~~~T~~~A~~ 385 (458)
T 2p9b_A 354 YATWRELE------LLVAYAGFSPAEALHAATAVNASI 385 (458)
T ss_dssp TCHHHHHH------HHHHHHCCCHHHHHHHHTHHHHHH
T ss_pred ccHHHHHH------HHHHhcCCCHHHHHHHHHHHHHHH
Confidence 22222322 233334799999999999999984
|
| >2imr_A Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, structural genomics, protein structure initiative; 1.78A {Deinococcus radiodurans} SCOP: b.92.1.11 c.1.9.16 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=236.45 Aligned_cols=316 Identities=16% Similarity=0.096 Sum_probs=180.9
Q ss_pred CccEEEECcEEEcCCC--ceeeeEEEeCCeEEEeeCCCCC---CCCceEEeCCCCEEeccccccccccccCcC-C-----
Q 014320 52 SSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G----- 120 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~--~~~~~i~i~~g~I~~vg~~~~~---~~~~~viD~~g~~v~PG~ID~H~H~~~~~~-g----- 120 (427)
|.+++|+|++|++++. ..+++|+|+||||++||+..+. .++.++||++ ++|+|||||+|+|+..+.. +
T Consensus 36 ~~~~li~n~~v~~~~~~~~~~~~V~I~~g~I~~vg~~~~~~~~~~~~~viD~~-~~v~PGlID~H~H~~~~~~~g~~~~~ 114 (420)
T 2imr_A 36 HTPRLLTCDVLYTGMGGAQSPGGVVVVGETVAAAGHPDELRRQYPHAAEERAG-AVIAPPPVNAHTHLDMSAYEFQALPY 114 (420)
T ss_dssp CCEEEEEESEEECC---EESSEEEEEETTEEEEEECHHHHHHHCTTCEEEECC-SEESSCCCEEEEESSCCHHHHHHCHH
T ss_pred cccEEEECCEEEeCCCCeeeccEEEEECCEEEEecCcccccccCCCCeeecCC-eEECCCCEecCcCcchhhhhhccCCH
Confidence 4678999999999874 3578999999999999975321 1346899999 9999999999999876310 0
Q ss_pred --C-----------CChhhHHHHHHHHHcCCceEEecCcCCCCCcHHHHHHH-HHHHhccccceeceeccccCCChhhHH
Q 014320 121 --S-----------ETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEA-YEKKAKNSCMDYGFHMAITKWDEVVSD 186 (427)
Q Consensus 121 --~-----------~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (427)
. .++.......+.++++||||++|+... .+.++. ..+.+.+..+.+.+.........+..+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~-----~~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~ 189 (420)
T 2imr_A 115 FQWIPEVVIRGRHLRGVAAAQAGADTLTRLGAGGVGDIVWA-----PEVMDALLAREDLSGTLYFEVLNPFPDKADEVFA 189 (420)
T ss_dssp HHTSHHHHHHHTTCCHHHHHHHHHHHHHHTTCCCEEEEECS-----HHHHHHHHTCTTCCEEEEEEECBCCGGGHHHHHH
T ss_pred HHHHHHhhhhhhhccCHHHHHHHHHHHHhcCcEEEEEccCC-----HHHHHHHHHhcCcEEEEEeeecCCCchhhHHHHH
Confidence 0 001222445677899999999998632 223332 222222322222221100000111223
Q ss_pred HHHHHHHH---cCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-CChhhHHHHHHHHHHcCCC--------
Q 014320 187 EMEVMVKE---KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGIT-------- 254 (427)
Q Consensus 187 ~~~~l~~~---~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~~l~~~G~~-------- 254 (427)
+..++++. .+...+|+++++++.+.++++.++++++.|+++|+++++|+ ++.+.+....+ ..|..
T Consensus 190 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~~---~~g~~~~~~~~~~ 266 (420)
T 2imr_A 190 AARTHLERWRRLERPGLRLGLSPHTPFTVSHRLMRLLSDYAAGEGLPLQIHVAEHPTELEMFRT---GGGPLWDNRMPAL 266 (420)
T ss_dssp HHHHHHHHHHTTCBTTEEEEEEECCSSSBCHHHHHHHHHHHHHHTCCBEEEESCSHHHHHHHHH---SCSTTGGGSCGGG
T ss_pred HHHHHHHHHhcccCCceEEEecCCcCCCcCHHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHH---hhccccccccccc
Confidence 33333322 23456788888887778899999999999999999999998 55544543322 11211
Q ss_pred Cccccc-----ccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCC
Q 014320 255 GPEGHA-----LSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHS 329 (427)
Q Consensus 255 ~~~~~~-----~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~ 329 (427)
.+.++. ...+.. ..+... ......+.+..+.|+..... +.++.+++.|+.+ ++||++.....
T Consensus 267 ~~~~~~~~~~~~~~~~~---~~~~~~-~~~g~l~~~~~i~H~~~l~~-~~i~~l~~~g~~~--~~~p~~~~~~~------ 333 (420)
T 2imr_A 267 YPHTLAEVIGREPGPDL---TPVRYL-DELGVLAARPTLVHMVNVTP-DDIARVARAGCAV--VTCPRSNHHLE------ 333 (420)
T ss_dssp SCSSHHHHHTSCCCTTC---CHHHHH-HHHTCGGGCCEEEECCSCCH-HHHHHHHHHTCCE--EECHHHHHHTT------
T ss_pred hhhhhhhhccccccCCC---CHHHHH-HHcCCCCCCeEEEecCcCCH-HHHHHHHHcCCeE--EECHHHHHHhc------
Confidence 000000 000000 001111 11111122334556544332 4566677778654 45886432110
Q ss_pred CcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHh-cC
Q 014320 330 DFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVE-SG 408 (427)
Q Consensus 330 ~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~-~~ 408 (427)
. ..||+ ++++++|+++++||||.++....+. + .+ +.. .++ ..
T Consensus 334 -----~---~~~~l---------~~~~~~Gv~~~lgtD~~~~~~~~~~------~--------~~--~~~----~~~~~~ 376 (420)
T 2imr_A 334 -----C---GTFDW---------PAFAAAGVEVALGTDSVASGETLNV------R--------EE--VTF----ARQLYP 376 (420)
T ss_dssp -----C---CCCCH---------HHHHHTTCCEEECCCCHHHHSCSCT------H--------HH--HHH----HHHHCT
T ss_pred -----c---CCCCH---------HHHHHCCCeEEEECCCCccCCCCCH------H--------HH--HHH----HHhcCC
Confidence 1 13554 4689999999999998543111110 0 11 111 122 35
Q ss_pred CCCHHHHHHHHchhhhcC
Q 014320 409 QISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 409 ~l~l~~~v~~~t~npA~~ 426 (427)
+++++++++++|.||||+
T Consensus 377 ~ls~~~al~~aT~n~A~~ 394 (420)
T 2imr_A 377 GLDPRVLVRAAVKGGQRV 394 (420)
T ss_dssp TSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 799999999999999984
|
| >2qt3_A N-isopropylammelide isopropyl amidohydrolase; N-isopropylammelide isopropylaminohydrolase ATZC, structural genomics, NYSGXRC, target 9364B; 2.24A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-26 Score=225.41 Aligned_cols=298 Identities=15% Similarity=0.109 Sum_probs=180.0
Q ss_pred CccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcC----------CC
Q 014320 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM----------GS 121 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~----------g~ 121 (427)
+.+++|+|++|+++... ++|+|+||||++||+..+. ++.++||++|++|+|||||+|+|+.++.. +.
T Consensus 4 ~~~~li~n~~v~~~~~~--~~v~I~~g~I~~vg~~~~~-~~~~viD~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~g~ 80 (403)
T 2qt3_A 4 DFDLIIRNAYLSEKDSV--YDIGIVGDRIIKIEAKIEG-TVKDEIDAKGNLVSPGFVDAHTHMDKSFTSTGERLPKFWSR 80 (403)
T ss_dssp CEEEEEEEEEETTTTEE--EEEEEETTEEEEEESSCCS-CEEEEEECTTCBEEECEEEEEECGGGTTTTCSSSSCTTCSS
T ss_pred ccceEEEeeEecCCCee--EEEEEECCEEEEeecCCCC-CccceEcCCCCEecccceeeeeccchhhcccccccccccCC
Confidence 46789999999987643 8999999999999986543 24579999999999999999999987531 21
Q ss_pred C-----------------ChhhHHH----HHHHHHcCCceEEecCcCCCCC---cHHHH-HHHHHHHhccccceeceec-
Q 014320 122 E-----------------TIDDFFS----GQAAALAGGTTMHIDFVIPING---SLTAG-FEAYEKKAKNSCMDYGFHM- 175 (427)
Q Consensus 122 ~-----------------~~e~~~~----~~~~~l~~GvTtv~d~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~- 175 (427)
. ++++++. ..+.++++||||+.++...... ...+. .+...+. +..+......
T Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 158 (403)
T 2qt3_A 81 PYTRDAAIEDGLKYYKNATHEEIKRHVIEHAHMQVLHGTLYTRTHVDVDSVAKTKAVEAVLEAKEEL--KDLIDIQVVAF 158 (403)
T ss_dssp CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTTEEEEEEEEECSTTTTTHHHHHHHHHHHHH--TTTCEEEEEEE
T ss_pred CcccCcCHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCcEEEEEEcccCccccchHHHHHHHHHHh--hcceeEEEEEc
Confidence 0 2223332 3566789999999765432211 11122 2222222 1222221110
Q ss_pred --cccCCChhhHHHHHHHHHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecC-ChhhHHHHHHHHHHcC
Q 014320 176 --AITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE-NGDAVFEGQKRMIELG 252 (427)
Q Consensus 176 --~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e-~~~~~~~~~~~l~~~G 252 (427)
......++..+.++++. +.|...++. ++++.....+++.++++++.|+++|+++++|+. ......
T Consensus 159 ~~~~~~~~~~~~~~~~~~~-~~g~~~~~~-~~p~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~---------- 226 (403)
T 2qt3_A 159 AQSGFFVDLESESLIRKSL-DMGCDLVGG-VDPATRENNVEGSLDLCFKLAKEYDVDIDYHIHDIGTVGV---------- 226 (403)
T ss_dssp CTTCTTTSTTHHHHHHHHH-HTTCSEEEC-BCTTTTTSCHHHHHHHHHHHHHHTTCEEEEEECCCHHHHH----------
T ss_pred CCcccccCcchHHHHHHHH-hcCCCeEEE-ecCCCCCCChHHHHHHHHHHHHHcCCCeEEEeCCcccchh----------
Confidence 00011223344455555 566665543 345545556679999999999999999999984 432221
Q ss_pred CCCcccccccCCHHHHHHHHHHHHHHHHhcC--CCEEEEcCCCHHH------HHHHHHHhhcCCCEEEecCccceeeCcc
Q 014320 253 ITGPEGHALSRPPLLEGEATTRAIRLAEFVN--TPLYVVHVMSMDA------MEEIAKARKAGQRVIGEPVVSGLVLDDS 324 (427)
Q Consensus 253 ~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g--~~~~i~H~~~~~~------~~~i~~~~~~G~~v~~~~~p~~l~~~~~ 324 (427)
.+++..++.+.+.| .++.+.|+...+. .+.++++++.|+.+.+ ||..
T Consensus 227 -----------------~~~~~~~~~~~~~g~~~~~~i~H~~~~~~~~~~~~~~~~~~l~~~g~~v~~--~p~~------ 281 (403)
T 2qt3_A 227 -----------------YSINRLAQKTIENGYKGRVTTSHAWCFADAPSEWLDEAIPLYKDSGMKFVT--CFSS------ 281 (403)
T ss_dssp -----------------HHHHHHHHHHHHTTCTTSEEEEECTHHHHSCHHHHHHHHHHHHHHTCEEEE--ETTT------
T ss_pred -----------------HHHHHHHHHHHHcCCCCCeEEEehhhhccCChhhHHHHHHHHHHcCCEEEE--CCCC------
Confidence 11222233333444 3788999976553 2678888889987766 5520
Q ss_pred cccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchh--hHhHHHHHH
Q 014320 325 WLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGI--EERMHLVWD 402 (427)
Q Consensus 325 ~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~--e~~l~~~~~ 402 (427)
. .. .+| ++++++.|+.+++|||+.... + .+.|.... +..+.....
T Consensus 282 ---~------~~---~~~---------~~~~~~~Gv~v~lgtD~~~~~----------~--~~~g~~~~~~~~~~~~~~~ 328 (403)
T 2qt3_A 282 ---T------PP---TMP---------VIKLLEAGINLGCASDNIRDF----------W--VPFGNGDMVQGALIETQRL 328 (403)
T ss_dssp ---C------CT---TCC---------HHHHHHTTCEEEEECCSCSSS----------S--CSCCCCCHHHHHHHHHHHT
T ss_pred ---C------CC---CCC---------HHHHHHcCCcEEEeCCCCCCC----------C--CCCCCCCHHHHHHHHHHHh
Confidence 0 00 122 567889999999999984211 0 01222111 112221110
Q ss_pred HHHhcCCCCHHHHHHHHchhhhcC
Q 014320 403 TMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 403 ~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
. ....++++++++++|.|||++
T Consensus 329 -~-~~~~~~~~~al~~~T~~~A~~ 350 (403)
T 2qt3_A 329 -E-LKTNRDLGLIWKMITSEGARV 350 (403)
T ss_dssp -T-CCSHHHHHHHHHHTTHHHHHH
T ss_pred -C-cCCccCHHHHHHHHHHHHHHh
Confidence 0 012378999999999999974
|
| >4aql_A Guanine deaminase; hydrolase, purine metabolism; HET: TXC; 1.99A {Homo sapiens} PDB: 2uz9_A* 3e0l_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-26 Score=229.83 Aligned_cols=316 Identities=17% Similarity=0.106 Sum_probs=197.7
Q ss_pred CccEEEECcEEEcCCC-----ceeeeEEEeC-CeEEEeeCCCCC--------CCCceEEeC-CCCEEecccccccccccc
Q 014320 52 SSKILIKGGTVVNAHH-----QQIADVYVED-GIVVAVQPNINV--------GDDVKVLDA-TGKFVMPGGIDPHTHLAM 116 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~-----~~~~~i~i~~-g~I~~vg~~~~~--------~~~~~viD~-~g~~v~PG~ID~H~H~~~ 116 (427)
+.+++|+|..|.+... .++++|+|+| |||++||+..+. .++.++||+ +|++|+|||||+|+|+.+
T Consensus 30 ~~~~~~~g~~i~~~~~~~~~~~~~~~v~I~~~g~I~~vg~~~~~~~~~~~~~~~~~~viD~~~g~~v~PG~ID~H~H~~~ 109 (476)
T 4aql_A 30 PLAHIFRGTFVHSTWTCPMEVLRDHLLGVSDSGKIVFLEEASQQEKLAKEWCFKPCEIRELSHHEFFMPGLVDTHIHASQ 109 (476)
T ss_dssp -CCEEEEEEEEECCSSCSCEEEEEEEEEECTTSBEEEEEEGGGHHHHHHHTTCCGGGCEECCTTCEEEECEEEEEEEGGG
T ss_pred CccEEEEccEEecCCCCceeEecCcEEEEecCCeEEEecCcchhhhhhhhccCCCceEEEcCCCCEEeCCeeccccchHH
Confidence 4568999999987542 3689999998 999999986321 134689995 589999999999999866
Q ss_pred CcC-CCC--------------------Chhh----HHH-HHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccce
Q 014320 117 EFM-GSE--------------------TIDD----FFS-GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMD 170 (427)
Q Consensus 117 ~~~-g~~--------------------~~e~----~~~-~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (427)
... |.. ..++ .+. ....++++||||+.++...........++...+.+.+..+.
T Consensus 110 ~~~rg~~~d~~l~~wL~~~~~p~e~~~~~~~~~~~~~~~~~~e~l~~G~Tt~~~~~~~~~~~~~~~~~a~~~~G~r~~~~ 189 (476)
T 4aql_A 110 YSFAGSSIDLPLLEWLTKYTFPAEHRFQNIDFAEEVYTRVVRRTLKNGTTTACYFATIHTDSSLLLADITDKFGQRAFVG 189 (476)
T ss_dssp GGGTTSCCCSCHHHHHHHTHHHHHHGGGSHHHHHHHHHHHHHHHHHTTEEEEEEECCSCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHhcCCCHHHHHHHhhhhHHHhcCCHHHHHHHHHHHHHHHHHCCeeEEEEecccCchHHHHHHHHHHHhCCEEEEe
Confidence 421 110 1111 112 23568999999999875332222334566667777664443
Q ss_pred eceecc------ccCCChhhHHHHHHHHHH---cCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-CChhh
Q 014320 171 YGFHMA------ITKWDEVVSDEMEVMVKE---KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDA 240 (427)
Q Consensus 171 ~~~~~~------~~~~~~~~~~~~~~l~~~---~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e~~~~ 240 (427)
...... .....++.+++.++++++ .+...++..++++..+.++++.++++++.|+++|+++++|+ |+..+
T Consensus 190 ~~~~d~~~~~p~~~~~~~~~l~~~~~~i~~~~~~~~~~v~~~l~p~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~e 269 (476)
T 4aql_A 190 KVCMDLNDTFPEYKETTEESIKETERFVSEMLQKNYSRVKPIVTPRFSLSCSETLMGELGNIAKTRDLHIQSHISENRDE 269 (476)
T ss_dssp CEECSCCSSCTTSCCCHHHHHHHHHHHHHHHHHHTCSSEEECBEECCTTTSCHHHHHHHHHHHHHTTCCEEEEESCSHHH
T ss_pred eccccCCCCCcccccCHHHHHHHHHHHHHHHhcCCCCceEEEEeCCcCCcCCHHHHHHHHHHHHHcCCceEEEecCCHHH
Confidence 322111 111123445555555432 23557888889999999999999999999999999999996 66666
Q ss_pred HHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCcccee
Q 014320 241 VFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLV 320 (427)
Q Consensus 241 ~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~ 320 (427)
+..+.+. .|... + ..+.++.....+.+..+.|+..... +.++.+++.|+.+.. ||....
T Consensus 270 ~~~~~~~---~~~~~-------~--------~~~~~~~~g~l~~~~~~~H~~~l~~-~~~~~l~~~g~~v~~--~P~sn~ 328 (476)
T 4aql_A 270 VEAVKNL---YPSYK-------N--------YTSVYDKNNLLTNKTVMAHGCYLSA-EELNVFHERGASIAH--CPNSNL 328 (476)
T ss_dssp HHHHHHH---CTTSS-------S--------HHHHHHTTTCCSTTEEEEECTTCCH-HHHHHHHHHTCEEEE--CHHHHH
T ss_pred HHHHHHH---hCCCC-------C--------HHHHHHHcCCCCCCEEEEeCCCCCH-HHHHHHHHcCCEEEE--Cchhhh
Confidence 6544321 11100 0 0011111122345678889877654 567888888877665 775322
Q ss_pred eCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHH
Q 014320 321 LDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLV 400 (427)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~ 400 (427)
... .. .+| ++++++.|+.+++|||+.+... .+.. .+.+....
T Consensus 329 ~l~-----------~g---~~p---------~~~~~~~Gv~v~lGtD~~~~~~-~~~~--------------~~~~~a~~ 370 (476)
T 4aql_A 329 SLS-----------SG---FLN---------VLEVLKHEVKIGLGTDVAGGYS-YSML--------------DAIRRAVM 370 (476)
T ss_dssp HTT-----------CC---CCC---------HHHHHHTTCEEEECCCTTTSSC-CCHH--------------HHHHHHHH
T ss_pred hhC-----------cc---hHH---------HHHHHHCCCcEEEeCCCCCCCC-CCHH--------------HHHHHHHH
Confidence 111 11 233 4568899999999999754321 1110 12333333
Q ss_pred HHHHH-----hcCCCCHHHHHHHHchhhhcC
Q 014320 401 WDTMV-----ESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 401 ~~~~~-----~~~~l~l~~~v~~~t~npA~~ 426 (427)
+.+.. ...+++++++++++|.|||+.
T Consensus 371 ~~~~~~~~~~~~~~l~~~~al~~aT~~~A~~ 401 (476)
T 4aql_A 371 VSNILLINKVNEKSLTLKEVFRLATLGGSQA 401 (476)
T ss_dssp HHHHHHHTTSSSSCCCHHHHHHHHTHHHHHH
T ss_pred HHhhhhcccCCCCcCCHHHHHHHHHHHHHHH
Confidence 32222 236899999999999999974
|
| >1p1m_A Hypothetical protein TM0936; putative metal dependent hydrolase, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: b.92.1.4 c.1.9.9 PDB: 2plm_A* 1j6p_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-27 Score=231.57 Aligned_cols=290 Identities=18% Similarity=0.203 Sum_probs=174.9
Q ss_pred EEEECcEEEcCCC--ceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcC-C-----------
Q 014320 55 ILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G----------- 120 (427)
Q Consensus 55 ~~i~~~~i~~~~~--~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~-g----------- 120 (427)
++|+|++|++++. ..+++|+|+||||++||+.. ++.+ ||++|++|+|||||+|+|+..... +
T Consensus 1 ~li~n~~v~~~~~~~~~~~~v~I~~g~I~~vg~~~---~~~~-iD~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~ 76 (406)
T 1p1m_A 1 MIIGNCLILKDFSSEPFWGAVEIENGTIKRVLQGE---VKVD-LDLSGKLVMPALFNTHTHAPMTLLRGVAEDLSFEEWL 76 (406)
T ss_dssp CEEEEEEECCSTTSCCEEEEEEEETTEEEEEEESS---CCCS-EECTTEEEEECEEEEEECGGGGGGTTSSCSCCHHHHH
T ss_pred CEEEccEEEecCccccccceEEEECCEEEEeeCCC---Ccce-ecCCCcEEeecccchhhccchhhhccccCCCCHHHHH
Confidence 3799999998764 56789999999999999753 2356 999999999999999999976421 1
Q ss_pred ---------CCChhhHHHHH----HHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceeccccCCChhhHHH
Q 014320 121 ---------SETIDDFFSGQ----AAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDE 187 (427)
Q Consensus 121 ---------~~~~e~~~~~~----~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (427)
..++++++..+ +.++++||||++|+.. .....++..++.+.+..+..++. .......+.+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~----~~~~~~~~~~~~g~r~~~~~~~~-~~~~~~~~~~~~ 151 (406)
T 1p1m_A 77 FSKVLPIEDRLTEKMAYYGTILAQMEMARHGIAGFVDMYF----HEEWIAKAVRDFGMRALLTRGLV-DSNGDDGGRLEE 151 (406)
T ss_dssp HTTHHHHHTTCCHHHHHHHHHHHHHHHHTTTEEEEEEEES----SHHHHHHHHHHHCCEEEEEEEEC-CBTTBCTTHHHH
T ss_pred HhhhccchhcCCHHHHHHHHHHHHHHHHhcCcEEEEechh----CHHHHHHHHHHcCCEEEEEcccc-cCCCCHHHHHHH
Confidence 02345554433 4568999999999753 13334444444444432222111 111112333444
Q ss_pred HHHHHHH-cCC-CeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-CChhhHHHHHHHHHHcCCCCcccccccCC
Q 014320 188 MEVMVKE-KGI-NSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITGPEGHALSRP 264 (427)
Q Consensus 188 ~~~l~~~-~g~-~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~~l~~~G~~~~~~~~~~~p 264 (427)
..++++. .+. ..+|+.+.++.++.++++.++++++.|+++|+++++|+ ++.+.+....+.+ ..|
T Consensus 152 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~-~~g------------ 218 (406)
T 1p1m_A 152 NLKLYNEWNGFEGRIFVGFGPHSPYLCSEEYLKRVFDTAKSLNAPVTIHLYETSKEEYDLEDIL-NIG------------ 218 (406)
T ss_dssp HHHHHHHHTTGGGTEEEEEEECCTTTSCHHHHHHHHHHHHHTTCCEEEEESCSTTCCCCTHHHH-TTT------------
T ss_pred HHHHHHHhhCCCCcEEEEEecCccCcCCHHHHHHHHHHHHHCCCcEEEEcCCCchHHHHHHHhh-hCC------------
Confidence 4444432 222 45787777877777899999999999999999999998 4543332111100 000
Q ss_pred HHHHHHHHHHHHHHHHhcCCC-EEEEcCC---CHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEc
Q 014320 265 PLLEGEATTRAIRLAEFVNTP-LYVVHVM---SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMS 340 (427)
Q Consensus 265 ~~~e~~a~~~~~~~~~~~g~~-~~i~H~~---~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~ 340 (427)
.++.|.. ..+.|+. .... +.++.+ ...||...+ . ..
T Consensus 219 --------------~~~~g~~~~~~~H~~~~~~~~~-~~~~~~--------~~~~p~~~~-----------~------~~ 258 (406)
T 1p1m_A 219 --------------LKEVKTIAAHCVHLPERYFGVL-KDIPFF--------VSHNPASNL-----------K------LG 258 (406)
T ss_dssp --------------TTTSCEEEEECTTCCGGGTTTT-TTSSEE--------EEECHHHHH-----------H------TT
T ss_pred --------------HhHcCcceeEeeeccCcccCCH-HHHHHH--------HHhCcHHHh-----------h------cC
Confidence 0001110 2344443 2221 111111 123432110 0 00
Q ss_pred CCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHc
Q 014320 341 PPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTS 420 (427)
Q Consensus 341 pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t 420 (427)
+ ....+++++++|+++++||||.+++...+. -.+.+++.++..++..+++|++++++++|
T Consensus 259 ~------~~~~~~~~~~~Gv~~~lgtD~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~ls~~~al~~~T 318 (406)
T 1p1m_A 259 N------GIAPVQRMIEHGMKVTLGTDGAASNNSLNL--------------FFEMRLASLLQKAQNPRNLDVNTCLKMVT 318 (406)
T ss_dssp C------CCCCHHHHHHTTCEEEECCCCTTTTSCCCH--------------HHHHHHHHHHHHTTCTTSSCHHHHHHHHT
T ss_pred C------CcCcHHHHHhCCCeEEEECCCCcCCCCCCH--------------HHHHHHHHHHhcccCCCCCCHHHHHHHHH
Confidence 1 112378899999999999999776432221 12556666665444356899999999999
Q ss_pred hhhhcC
Q 014320 421 TEWGRL 426 (427)
Q Consensus 421 ~npA~~ 426 (427)
.|||++
T Consensus 319 ~~~A~~ 324 (406)
T 1p1m_A 319 YDGAQA 324 (406)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999984
|
| >2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-26 Score=225.26 Aligned_cols=301 Identities=16% Similarity=0.147 Sum_probs=184.6
Q ss_pred CccEEEECcEEEcCCC--c-eeeeEEEeCCeEEEeeCCCCCCCCc--eEEeCCCCEEeccccccccccccCcCCC-----
Q 014320 52 SSKILIKGGTVVNAHH--Q-QIADVYVEDGIVVAVQPNINVGDDV--KVLDATGKFVMPGGIDPHTHLAMEFMGS----- 121 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~--~-~~~~i~i~~g~I~~vg~~~~~~~~~--~viD~~g~~v~PG~ID~H~H~~~~~~g~----- 121 (427)
.++++|+|++|++++. . .+++|+|+||||++|++.. .+++. ++||++|++|+|||||+|+|+.......
T Consensus 6 ~~~~li~n~~v~~~~~~~~~~~~~v~I~~g~I~~vg~~~-~~~~~~~~viD~~g~~v~PGlID~H~H~~~~~~~~~~~~~ 84 (418)
T 2qs8_A 6 DSKTLIHAGKLIDGKSDQVQSRISIVIDGNIISDIKKGF-ISSNDFEDYIDLRDHTVLPGLMDMHVHFGQEYQSKAQAPI 84 (418)
T ss_dssp -CCEEEEEEEECCSSCSSCEEEEEEEEETTEEEEEEESC-CCCTTSSEEEEEEEEEEEECEEEEEECTTCCCCCTTTSCS
T ss_pred CccEEEEeeEEEeCCCCccccCcEEEEECCEEEEEeCCC-CCCCCcceEEECCCCEECCCeeeeeeccccCCCCCchhhh
Confidence 3568999999999876 2 5689999999999999754 23456 8999999999999999999998752110
Q ss_pred -CChhhHH----HHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhc----ccccee------ceecc----------
Q 014320 122 -ETIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK----NSCMDY------GFHMA---------- 176 (427)
Q Consensus 122 -~~~e~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~------~~~~~---------- 176 (427)
.+++... ..++.++++||||++|+.... .....++...+.+. +..... +.+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~--~~~~~~~~~~~~g~~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~ 162 (418)
T 2qs8_A 85 KVEREMQAILATQHAYVTFKSGFTTVRQVGDSG--LVAISLRDAINSGKLAGPRIFAAGKTIATTGGHADPTNGKAVDDY 162 (418)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTEEEEEECCCSS--SHHHHHHHHHHTTSSCCCEEEECCSCBEETTCTTCTTTTCCGGGC
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCCEEEeCCCCc--cccHHHHHHHHCCCCCCCeEEecCccccccCCCcccccccccccc
Confidence 2333322 256778999999999985322 12223444444332 111100 00100
Q ss_pred --------ccCCChhhHHHHHHHHHHcCCCeEEEEEecC--------CCccCCHHHHHHHHHHHHHcCCcEEEecCChhh
Q 014320 177 --------ITKWDEVVSDEMEVMVKEKGINSFKFFMAYK--------GSFMINDELLIEGFKRCKSLGALAMVHAENGDA 240 (427)
Q Consensus 177 --------~~~~~~~~~~~~~~l~~~~g~~~ik~~~~~~--------~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~ 240 (427)
.....++..+.+++.. ..|.+.+|++.+.. +.+.+++++++++++.|+++|+++.+|+++...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~ik~~~~g~~~~~~~~~g~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~ 241 (418)
T 2qs8_A 163 DYPVPEQGVVNGPYEVYAAVRQRY-KDGADGIKITVTGGVLSVAKSGQNPQFTQEEVDAVVSAAKDYGMWVAVHAHGAEG 241 (418)
T ss_dssp CCCCGGGTEECSHHHHHHHHHHHH-HHTCSEEEEECBCCSSSSSSCSSCBCSCHHHHHHHHHHHHHTTCEEEEEECSHHH
T ss_pred ccccccccccCCHHHHHHHHHHHH-HcCCCEEEEEecCCCCCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence 0000112222233333 46888999997531 335679999999999999999999999987654
Q ss_pred HHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCcccee
Q 014320 241 VFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLV 320 (427)
Q Consensus 241 ~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~ 320 (427)
+... ++ .|.. .+.|+..... +.++++++.|+.+ ||.+..
T Consensus 242 i~~~-------------------------------~~----~g~~-~i~H~~~~~~-~~i~~l~~~gv~v----~p~~~~ 280 (418)
T 2qs8_A 242 MKRA-------------------------------IK----AGVD-SIEHGTFMDL-EAMDLMIENGTYY----VPTISA 280 (418)
T ss_dssp HHHH-------------------------------HH----HTCS-EEEECTTCCH-HHHHHHHHHTCEE----ECCHHH
T ss_pred HHHH-------------------------------HH----cCCC-EEEECCCCCH-HHHHHHHHCCCEE----eeeech
Confidence 4221 11 2332 4788776543 6678888888643 454322
Q ss_pred eCcccccCCCcccCceeEEcCCCCC-c-------ccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCch
Q 014320 321 LDDSWLWHSDFVTAAKYVMSPPIRA-S-------GHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNG 392 (427)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~pplr~-~-------~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~ 392 (427)
++. +.. + ......||.+. + .....++++++.|+.+++|||+ |..+.. ++ .
T Consensus 281 ~~~--~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~v~~gTD~-~~~~~~------~~--------~ 338 (418)
T 2qs8_A 281 GEF--VAE-K----SKIDNFFPEIVRPKAASVGPQISDTFRKAYEKGVKIAFGTDA-GVQKHG------TN--------W 338 (418)
T ss_dssp HHH--HHH-H----TTSTTSSCTTTHHHHHHHHHHHHHHHHHHHHHTCCBCCCCCB-TTBCTT------CT--------T
T ss_pred HHH--hhh-h----ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeCCC-CcCCcc------hH--------H
Confidence 110 000 0 00011244432 1 1235688999999999999997 432110 11 1
Q ss_pred hhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 393 IEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 393 ~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
.+.+ .+++ .++|++++++++|.|||++
T Consensus 339 ~e~~------~~~~-~gls~~eal~~~T~n~A~~ 365 (418)
T 2qs8_A 339 KEFV------YMVE-NGMPAMKAIQSATMETAKL 365 (418)
T ss_dssp HHHH------HHHH-TTCCHHHHHHHTTHHHHHH
T ss_pred HHHH------HHHH-cCCCHHHHHHHHHHHHHHH
Confidence 1211 1223 3799999999999999974
|
| >2ics_A Adenine deaminase; TIM barrel, binuclear zinc, adenine complex, amidohydrolase, structural genomics, PSI, protein structure initiative; HET: KCX ADE; 2.30A {Enterococcus faecalis} SCOP: b.92.1.8 c.1.9.14 | Back alignment and structure |
|---|
Probab=99.95 E-value=9e-28 Score=233.82 Aligned_cols=298 Identities=14% Similarity=0.053 Sum_probs=181.9
Q ss_pred CccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCC-CEEeccccccccccccCcCCCCChhhHHHH
Q 014320 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATG-KFVMPGGIDPHTHLAMEFMGSETIDDFFSG 130 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g-~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~ 130 (427)
+++++|+|++|+++. +++|+|+||||++|++... +++.++||++| ++|+|||||+|+|+..+ +...++ ..
T Consensus 4 ~~~~~i~~~~v~~~~---~~~v~i~~g~I~~ig~~~~-~~~~~~iD~~g~~~v~PG~ID~H~H~~~~--~~~~~~---~~ 74 (379)
T 2ics_A 4 DYDLLIKNGQTVNGM---PVEIAIKEKKIAAVAATIS-GSAKETIHLEPGTYVSAGWIDDHVHCFEK--MALYYD---YP 74 (379)
T ss_dssp CEEEEEEEEECTTSC---EEEEEEETTEEEEEESCCC-CCEEEEEECCTTCEEEECEEEEEECCCTT--SSSSCC---CH
T ss_pred cccEEEECCEEEcCC---cceEEEECCEEEEecCCCC-CCCCcEEeCCCCEEEccCEEEeccccCcc--CccccC---ch
Confidence 357899999999864 7899999999999997542 23457999999 99999999999999875 322222 23
Q ss_pred HHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhc--cccceeceeccccC--C---ChhhHHHHHHHHHH--cCCCeEE
Q 014320 131 QAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK--NSCMDYGFHMAITK--W---DEVVSDEMEVMVKE--KGINSFK 201 (427)
Q Consensus 131 ~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~---~~~~~~~~~~l~~~--~g~~~ik 201 (427)
.+.++++||||++|++...........+..++... +..+++...+.... . .+...++++++++. .++.++|
T Consensus 75 ~~~~~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 154 (379)
T 2ics_A 75 DEIGVKKGVTTVIDAGTTGAENIHEFYDLAQQAKTNVFGLVNISKWGIVAQDELADLSKVQASLVKKAIQELPDFVVGIK 154 (379)
T ss_dssp HHHTGGGTEEEEEEESSSCTTTHHHHHHHHHTSSSEEEEEEESSTTTTSSSCTTSSGGGCCHHHHHHHHHHCTTTEEEEE
T ss_pred hhhHhhCceeEEEcCCCCCccCHHHHHHHHHhhcccEEEEccccccCCCCHHHHHHHHHHHHHHHHHHHHhhhCcceEEE
Confidence 56789999999999764322233233332222221 12222211111111 1 11224566666643 3677888
Q ss_pred EEEecCCCccCCHHHHHHHHHHHHH-cCCcEEEecCC-hhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHH
Q 014320 202 FFMAYKGSFMINDELLIEGFKRCKS-LGALAMVHAEN-GDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLA 279 (427)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~e~-~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~ 279 (427)
++++++....++.+.++++++.|++ +|+++.+|+.+ .....+..+.+ +.| ....|+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~v~~H~~~~~~~~~~~~~~~-~~g--~~~~H~~------------------ 213 (379)
T 2ics_A 155 ARMSRTVIGDNGITPLELAKQIQQENQEIPLMVHIGSAPPHLDEILALM-EKG--DVLTHCF------------------ 213 (379)
T ss_dssp EEESHHHHTTCTTHHHHHHHHHHHTTTTCCEEEEECSSSSCHHHHHHHC-CTT--CEEESTT------------------
T ss_pred EeccccccccchHHHHHHHHHHHHHhcCCeEEEeCCCCcchHHHHHHHh-hcC--Ceeeecc------------------
Confidence 8886543334678899999999999 99999999854 32222222211 112 1111110
Q ss_pred HhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcC
Q 014320 280 EFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATG 359 (427)
Q Consensus 280 ~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G 359 (427)
.+.+.++.|.+.....+.++++++.|+ +++++|.+.. .+.+.++++++.|
T Consensus 214 --~~~~~~~~~~s~~~~~~~~~~~~~~g~--~~~~~p~~~~--------------------------~~~~~~~~~~~~G 263 (379)
T 2ics_A 214 --NGKENGILDQATDKIKDFAWQAYNKGV--VFDIGHGTDS--------------------------FNFHVAETALREG 263 (379)
T ss_dssp --CCSTTSSEETTTTEECHHHHHHHHTTC--EEECCCTTTS--------------------------CCHHHHHHHHHTT
T ss_pred --CCCccchhhccCHHHHHHHHHHHHcCC--EEEecCCCCC--------------------------cCHHHHHHHHHcC
Confidence 111223444433322366777778885 4445664211 0235588899999
Q ss_pred -CceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 360 -ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 360 -~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
.+++++||+.+. .+.. .+ +..++..+..+++ .++|++++++++|.||||+
T Consensus 264 ~~~~~l~TD~~~~---~~~~-------~~------~~~~~~~l~~~~~-~~ls~~~~~~~~T~n~A~~ 314 (379)
T 2ics_A 264 MKAASISTDIYIR---NREN-------GP------VYDLATTMEKLRV-VGYDWPEIIEKVTKAPAEN 314 (379)
T ss_dssp CCCSBCCCCBCHH---HHHS-------SS------CCCHHHHHHHHHH-HTCCHHHHHHTTTHHHHHH
T ss_pred CCcceEeccCccc---CCCC-------Cc------HhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHH
Confidence 999999998422 1110 01 1244444444433 4699999999999999985
|
| >2vun_A Enamidase; nicotinate degradation, binuclear metal center, amidohydrolases, stereospecificity, hydrolase; 1.89A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.8e-26 Score=220.06 Aligned_cols=291 Identities=17% Similarity=0.126 Sum_probs=179.6
Q ss_pred ccEEEECcEE-EcCCC----ceeeeEEEeCCeEEEeeCCCCC-CCC-ceEEeCCCCEEeccccccccccccCcCCCCChh
Q 014320 53 SKILIKGGTV-VNAHH----QQIADVYVEDGIVVAVQPNINV-GDD-VKVLDATGKFVMPGGIDPHTHLAMEFMGSETID 125 (427)
Q Consensus 53 ~~~~i~~~~i-~~~~~----~~~~~i~i~~g~I~~vg~~~~~-~~~-~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e 125 (427)
.+++|+|++| ++++. ..+++|+|+||||++|++.... +++ .++||++|++|+|||||+|+|+..+ +.....
T Consensus 2 ~~~li~n~~v~~~~~~~~~~~~~~~v~I~~g~I~~Ig~~~~~~~~~~~~viD~~g~~v~PGlID~H~H~~~~--~~~~~~ 79 (386)
T 2vun_A 2 SKTIIKNIGKIVSGDIKSPVLQADTIVVEDGLIAAIGGEELMKDAGDATIIDAAGSTVTPGLLDTHVHVSGG--DYAPRQ 79 (386)
T ss_dssp CEEEEESCSEEECSCTTSCEECCSEEEEETTEEEEEESGGGGTTCTTCEEEECTTCEEEECEEEEEECCCST--TEEGGG
T ss_pred ccEEEeccEEEEcCCCCccccccceEEEECCEEEEecCccccCCCCCceEEcCCCCEEccceeeccccccCC--CcChhH
Confidence 4689999999 98764 3568999999999999973221 234 5899999999999999999999753 211000
Q ss_pred hHHHHHHHHHcCCceEEecCcCC---CCCcHHHHHH---HHHH---Hhccccceeceecc---ccCCChhhHHHHHHHHH
Q 014320 126 DFFSGQAAALAGGTTMHIDFVIP---INGSLTAGFE---AYEK---KAKNSCMDYGFHMA---ITKWDEVVSDEMEVMVK 193 (427)
Q Consensus 126 ~~~~~~~~~l~~GvTtv~d~~~~---~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~ 193 (427)
.....++.++++||||++|+... ......+.++ .... .+.+. ....+..+ ..... ..++++++.
T Consensus 80 ~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~--~~~~~~~~~- 155 (386)
T 2vun_A 80 KTMDFISSALHGGVTTMISAGSPHFPGRPKDAAGTKALAITLSKSYYNARP-AGVKVHGGAVILEKGL--TEEDFIEMK- 155 (386)
T ss_dssp TEESHHHHHHTTTEEEEEECCCTTSTTCCCSHHHHHHHHHHHHHHHHHCCG-GGCEEECCEECCCTTC--CHHHHHHHH-
T ss_pred HHHHHHHHHHhCCceEEEeccccccCCChhhHHHHHHHHHHhhcccccccc-cceeeccCcccccCCc--CHHHHHHHH-
Confidence 11125788999999999997621 1111111222 1111 11110 00111111 11111 135677776
Q ss_pred HcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHH
Q 014320 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATT 273 (427)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~ 273 (427)
+.|...+|++... ..++++.++++++.|+++|+++++|+++..... .+. +.+
T Consensus 156 ~~g~~~ik~~~~~---~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~--------~~~----------------~~i- 207 (386)
T 2vun_A 156 KEGVWIVGEVGLG---TIKNPEDAAPMVEWAHKHGFKVQMHTGGTSIPG--------SST----------------VTA- 207 (386)
T ss_dssp HTTCCEEEEETSS---SCCSHHHHHHHHHHHHHTTCEEEEECSCCSCST--------TCS----------------CCH-
T ss_pred HhCCCeEEEeecC---CCCCHHHHHHHHHHHHHCCCeEEEecCCccccc--------cCH----------------HHH-
Confidence 6788899987532 236899999999999999999999995321100 000 001
Q ss_pred HHHHHHHhcCCCEEEEcCCC----HHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccH
Q 014320 274 RAIRLAEFVNTPLYVVHVMS----MDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHN 349 (427)
Q Consensus 274 ~~~~~~~~~g~~~~i~H~~~----~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~ 349 (427)
..+.+.|.+ .+.|+.. .. .+.++.+++.|+.+.. +++ + +. ...+.
T Consensus 208 ---~~~~~~G~~-~i~H~~~~~~~~~-~~~~~~~~~~g~~vl~--~~~----~------------------g~--~~~~~ 256 (386)
T 2vun_A 208 ---DDVIKTKPD-VVSHINGGPTAIS-VQEVDRIMDETDFAME--IVQ----C------------------GN--PKIAD 256 (386)
T ss_dssp ---HHHHHHCCS-EEETTTCSSSCCC-HHHHHHHHHHCCCEEE--EES----S------------------SC--HHHHH
T ss_pred ---HHHHHcCCC-EEEEccCCCCCCC-HHHHHHHHHcCCeEEE--ecc----C------------------Cc--ccccH
Confidence 111234555 4899876 33 3678888888987611 111 0 00 12345
Q ss_pred HHHHHHHhcCC--ceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 350 KALQAALATGI--LQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 350 ~~l~~~l~~G~--~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
..++++++.|+ .++++||+ |+.. ...+.|....+.+ .+ .+.+++++++++++|.||||+
T Consensus 257 ~~~~~~~~~g~~d~v~lgTD~-p~~~----------~~~~~g~~~~~~~------~~-~~~~ls~~~~~~~~T~n~A~~ 317 (386)
T 2vun_A 257 YVARRAAEKGQLGRVIFGNDA-PSGT----------GLIPLGILRNMCQ------IA-SMSDIDPEVAVCMATGNSTAV 317 (386)
T ss_dssp HHHHHHHHHTCGGGEEEECCB-SBTT----------BBCTTHHHHHHHH------HH-HHSCCCHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHcCCCceeEEecCC-CCCC----------CCCcchhHHHHHH------HH-hhcCCCHHHHHHHHhHHHHHH
Confidence 67899999999 88999998 4211 1112333333322 12 236799999999999999984
|
| >2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex, amido hydrola 9244B, structural genomics, PSI-2; HET: KCX; 2.62A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.8e-27 Score=229.98 Aligned_cols=293 Identities=18% Similarity=0.145 Sum_probs=175.5
Q ss_pred CCCCccEEEECcEEEcCCC---ceeeeEEEe-CCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCCh
Q 014320 49 IQSSSKILIKGGTVVNAHH---QQIADVYVE-DGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETI 124 (427)
Q Consensus 49 ~~~~~~~~i~~~~i~~~~~---~~~~~i~i~-~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~ 124 (427)
..|+.+++|+|++|++++. ..+++|+|+ ||||++|++..+.+.+.++||++|++|+|||||+|+|+..+ +....
T Consensus 11 ~~~~~~~li~n~~vv~~~~~~~~~~~~v~I~~~g~I~~Ig~~~~~~~~~~viD~~g~~v~PGlID~H~H~~~~--~~~~~ 88 (417)
T 2ogj_A 11 TPLQAPILLTNVKPVGFGKGASQSSTDILIGGDGKIAAVGSALQAPADTQRIDAKGAFISPGWVDLHVHIWHG--GTDIS 88 (417)
T ss_dssp ---CCCEEEEEEEECSSCTTCCCSCEEEEECTTSBEEEEETTCCCSSCEEECCC--CEEEECEEEEEECCCBT--TBSSC
T ss_pred ccCCCcEEEECCEEEcCCCCccCccceEEEecCCEEEEeccCCCCCCCCeEEECCCCEEccCeeecccccccc--ccccC
Confidence 3445689999999999765 367899999 99999999754333346899999999999999999999876 22221
Q ss_pred hhHHHHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhc---cccceeceecccc-----CCC---hhhHHHHHHHHH
Q 014320 125 DDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK---NSCMDYGFHMAIT-----KWD---EVVSDEMEVMVK 193 (427)
Q Consensus 125 e~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-----~~~---~~~~~~~~~l~~ 193 (427)
+. ..+.++++||||++|++...........+...+... +..+++...+... ... ....++++++.+
T Consensus 89 ~~---~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~~~~~~~~e~~~~~~~~~~~~~~~~~ 165 (417)
T 2ogj_A 89 IR---PSECGAERGVTTLVDAGSAGEANFHGFREYIIEPSRERIKAFLNLGSIGLVACNRVPELRDIKDIDLDRILECYA 165 (417)
T ss_dssp CC---GGGTSGGGTEEEEEEESSCCSTTHHHHHHHTTTTCSSEEEEEEESSTTTTTTTTTSCSCSSGGGCCHHHHHHHHH
T ss_pred CC---HHHHHHhCCcCeEEeCCcCCCcCHHHHHHHHhhccccCeEEEeccccCcCCCCCCcccccchhhcCHHHHHHHHH
Confidence 11 134579999999999864333222221121111111 1222221111100 000 112345566553
Q ss_pred H--cCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChh-hHHHHHHHHHHcCCCCcccccccCCHHHHHH
Q 014320 194 E--KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGD-AVFEGQKRMIELGITGPEGHALSRPPLLEGE 270 (427)
Q Consensus 194 ~--~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~-~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~ 270 (427)
. .++..+|+++++.....++.+.++++++.|++.|+++++|+++.. ........+
T Consensus 166 ~~~~~~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~l---------------------- 223 (417)
T 2ogj_A 166 ENSEHIVGLKVRASHVITGSWGVTPVKLGKKIAKILKVPMMVHVGEPPALYDEVLEIL---------------------- 223 (417)
T ss_dssp TCTTTEEEEEEEESHHHHTTCTTHHHHHHHHHHHHHTCCEEEEECSSSSCHHHHHHHC----------------------
T ss_pred hCCCceEEEEEEecCCccccccHHHHHHHHHHHHHcCCcEEEEcCCCcccHHHHHHHh----------------------
Confidence 2 234578888875433446788899999999999999999996432 122111110
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCC----------HHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEc
Q 014320 271 ATTRAIRLAEFVNTPLYVVHVMS----------MDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMS 340 (427)
Q Consensus 271 a~~~~~~~~~~~g~~~~i~H~~~----------~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~ 340 (427)
+....+.|+.. ....+.++++++.|+.+ +.+|...
T Consensus 224 ------------~~g~~~~H~~~~~~~~~~~~~~~~~~~i~~~~~~g~~v--~~~~~~~--------------------- 268 (417)
T 2ogj_A 224 ------------GPGDVVTHCFNGKSGSSIMEDEDLFNLAERCAGEGIRL--DIGHGGA--------------------- 268 (417)
T ss_dssp ------------CTTCEEETTTCCCTTTCTTSCHHHHHHHHHC--CCCEE--ECCBCSS---------------------
T ss_pred ------------cCCCEEEeccCCCccchhccCHHHHHHHHHHHhcCcEE--EecCCCc---------------------
Confidence 01133555432 33446777777888544 3444210
Q ss_pred CCCCCcccHHHHHHHHhcC-CceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHH
Q 014320 341 PPIRASGHNKALQAALATG-ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLT 419 (427)
Q Consensus 341 pplr~~~~~~~l~~~l~~G-~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~ 419 (427)
......++++++.| ++++++|||. ++. .. | -...++.++...++ .+++++++++++
T Consensus 269 -----~~~~~~~~~~~~~G~~~~~lgtD~~-~~~-~~------------g---~~~~l~~~~~~~~~-~~l~~~~al~~~ 325 (417)
T 2ogj_A 269 -----SFSFKVAEAAIARGLLPFSISTDLH-GHS-MN------------F---PVWDLATTMSKLLS-VDMPFENVVEAV 325 (417)
T ss_dssp -----SCCHHHHHHHHHTTCCCSBCCBCBS-TTT-TT------------T---TCCCHHHHHHHHHH-TTCCHHHHHHTT
T ss_pred -----cccchHHHHHHHcCCCceEEEcCCC-CCc-cC------------C---ChhHHHHHHHHHHH-cCCCHHHHHHHH
Confidence 01245688999999 9999999986 431 00 1 01245555544444 569999999999
Q ss_pred chhhhcC
Q 014320 420 STEWGRL 426 (427)
Q Consensus 420 t~npA~~ 426 (427)
|.||||+
T Consensus 326 T~n~A~~ 332 (417)
T 2ogj_A 326 TRNPASV 332 (417)
T ss_dssp THHHHHH
T ss_pred HHHHHHH
Confidence 9999984
|
| >3v7p_A Amidohydrolase family protein; iron binding site, enzyme functio initiative, EFI; HET: TLA; 1.35A {Nitratiruptor SP} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-26 Score=226.22 Aligned_cols=309 Identities=16% Similarity=0.064 Sum_probs=190.0
Q ss_pred EEEECcEEEcCCC-ceeeeEEEeCCeEEEeeCCCCCC---CCceEEeCCCCEEeccccccccccccCcCCC----C----
Q 014320 55 ILIKGGTVVNAHH-QQIADVYVEDGIVVAVQPNINVG---DDVKVLDATGKFVMPGGIDPHTHLAMEFMGS----E---- 122 (427)
Q Consensus 55 ~~i~~~~i~~~~~-~~~~~i~i~~g~I~~vg~~~~~~---~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~----~---- 122 (427)
++|+|++|++++. .++++|+| ||||++||+..+.+ ++.++||++|++|+|||||+|+|+.++.... .
T Consensus 2 ~~i~~~~v~~~~~~~~~~~v~i-~g~I~~Vg~~~~~~~~~~~~~vid~~g~~v~PGlId~H~H~~~~~~rg~~~~~~l~~ 80 (427)
T 3v7p_A 2 RIIKPFAILTPQTIIQDKAVAF-DKKIEAIDTVENLIKKYPNAAVEHDENSLLLPGFANPHLHLEFSANKATLQYGDFIP 80 (427)
T ss_dssp EEEEEEEEECSSSEEESCEEEE-SSBEEEEECHHHHHHHCTTSEEEEEEEEEEEECEEEEEECGGGTTCSSCSCCSSHHH
T ss_pred EEEECCEEEcCCCEEeCcEEEE-CCEEEEecChhhhccccCCceEEeCCCCEEecCEeecccCcchhhcccccccCCHHH
Confidence 5899999999877 45789999 99999999854322 3568999999999999999999998653211 0
Q ss_pred ------------ChhhH----HHHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceeccccCCChhhHH
Q 014320 123 ------------TIDDF----FSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSD 186 (427)
Q Consensus 123 ------------~~e~~----~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (427)
++++. ..+...++++||||+.|+..... .++...+.+.+..+............++..+
T Consensus 81 wl~~~~~~~~~~~~~~~~~~~~~~~~e~l~~GvTtv~d~~~~~~-----~~~a~~~~Gir~~~~~~~~~~~~~~~~~~~~ 155 (427)
T 3v7p_A 81 WLYSVIRHREDLLPLCDGACLEQTLSSIIQTGTTAIGAISSYGE-----DLQACIDSALKVVYFNEVIGSNAATADVMYA 155 (427)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTEEEEEEEESSST-----THHHHHHBSSEEEEEEEECBCCGGGHHHHHH
T ss_pred HHHHHHHhHHhcCHHHHHHHHHHHHHHHHHhCCEEEEEecCcHH-----HHHHHHhcCCeEEEeccccCCChhhhhHHHH
Confidence 01111 22334579999999999864422 1345555555543332221111111112222
Q ss_pred HHHHHHH---HcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-CChhhHHHHHH-------HHHHcCCCC
Q 014320 187 EMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQK-------RMIELGITG 255 (427)
Q Consensus 187 ~~~~l~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~-------~l~~~G~~~ 255 (427)
+..+..+ ..+...++..+++++++.++++.++.+++.|+++|+++++|+ |+..++..+.+ .+.+.|...
T Consensus 156 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~E~~~e~~~~~~~~g~~~~~~~~~~~~~ 235 (427)
T 3v7p_A 156 SFLERFHQSKKHENERFKAAVAIHSPYSVHYILAKRALDIAKKYGSLVSVHFMESRAEREWLDKGSGEFAKFFKEFLNQT 235 (427)
T ss_dssp HHHHHHHHHHTTCBTTEEEEEEECCTTTBCHHHHHHHHHHHHHHTCCEEEEESCSHHHHHHHHHSCSHHHHHHHHHTCCC
T ss_pred HHHHHHHHhhhccCCceEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHhcCcchhhhhhhccCC
Confidence 2222221 122456788888999999999999999999999999999996 77766654432 122333210
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHh-cCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccC
Q 014320 256 PEGHALSRPPLLEGEATTRAIRLAEF-VNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTA 334 (427)
Q Consensus 256 ~~~~~~~~p~~~e~~a~~~~~~~~~~-~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~ 334 (427)
+|.. ...+.... .+.++.+.|+...+. +.++.+++.|+.+. .||.......
T Consensus 236 -------~~~~-------~~~~~l~~~~~~~~~~~H~~~~~~-~~~~~l~~~g~~~~--~~p~s~~~~~----------- 287 (427)
T 3v7p_A 236 -------RPVN-------DTKSFLELFKELHTLFVHMVWANE-EEIQTIASYNAHII--HCPISNRLLG----------- 287 (427)
T ss_dssp -------SCSS-------CHHHHHHTTTTSEEEEEECTTCCH-HHHHHHHHSEEEEE--ECHHHHHHTT-----------
T ss_pred -------Cccc-------CHHHHHhhhcCCCEEEEECCCCCH-HHHHHHHHcCCEEE--ECHHHHHHhc-----------
Confidence 1111 01111112 466788999987664 66788888885554 5876432111
Q ss_pred ceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHH
Q 014320 335 AKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTD 414 (427)
Q Consensus 335 ~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~ 414 (427)
. ..+|++. + .|+.+++|||+.+.+...+.. .+.+....+.. .....+++++
T Consensus 288 ~---~~~~~~~---------~--~Gv~v~lgtD~~~~~~~~~~~--------------~~~~~a~~~~~-~~~~~~~~~~ 338 (427)
T 3v7p_A 288 N---GVLDLEK---------I--KSIPYAIATDGLSSNYSLNMY--------------EELKAALFVHP-NKEATTFAKE 338 (427)
T ss_dssp C---CCCCTTT---------T--TTSCEEECCCCTTSCSCCCHH--------------HHHHHHHHHST-TSCHHHHHHH
T ss_pred C---CCCCHHH---------H--CCCeEEEeCCCCCCCCCCCHH--------------HHHHHHHHhcc-CCCcccCHHH
Confidence 1 1366665 3 899999999974433221110 13333333211 1112366799
Q ss_pred HHHHHchhhhcC
Q 014320 415 YVRLTSTEWGRL 426 (427)
Q Consensus 415 ~v~~~t~npA~~ 426 (427)
+++++|.|||++
T Consensus 339 ~~~~~t~~~a~~ 350 (427)
T 3v7p_A 339 LIIRATKAGYDA 350 (427)
T ss_dssp HHHHHTHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999974
|
| >1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase, metalloprotease; HET: KCX; 1.65A {Escherichia coli} SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A* 1pok_B* 2aqo_A* 1ybq_A* 2aqv_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=219.68 Aligned_cols=306 Identities=20% Similarity=0.220 Sum_probs=177.6
Q ss_pred ccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCC--CCCceEEeCCCCEEeccccccccccccCcCCCC-C--hhhH
Q 014320 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSE-T--IDDF 127 (427)
Q Consensus 53 ~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~--~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~-~--~e~~ 127 (427)
..++|+|++|++++....++|+|+||||++||+.... +++.++||++|++|+|||||+|+|+... +.. . ..+.
T Consensus 8 ~~~~i~n~~v~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~--~~~~~~~~~~~ 85 (390)
T 1onw_A 8 GFTLLQGAHLYAPEDRGICDVLVANGKIIAVASNIPSDIVPNCTVVDLSGQILCPGFIDQHVHLIGG--GGEAGPTTRTP 85 (390)
T ss_dssp CCEEEESCEEESSSEEEECEEEEETTEEEEEETTCCTTSSSSCEEEECTTCEEEECEEEEEECTTCC--BCTTSGGGBCC
T ss_pred ceEEEECcEEECCCCCccceEEEECCEEEEEecCcccCCCCCCeEEeCCCCEECcCeeEeeECcccc--CccccccccCH
Confidence 4689999999998766678999999999999975432 2346899999999999999999998643 111 0 0111
Q ss_pred HHHHHHHHcCCceEEecCcCCCCC--cH---HHHHHHHHHHhccccceeceec-cccCCChhhHHHHHHHHHHcCCCeEE
Q 014320 128 FSGQAAALAGGTTMHIDFVIPING--SL---TAGFEAYEKKAKNSCMDYGFHM-AITKWDEVVSDEMEVMVKEKGINSFK 201 (427)
Q Consensus 128 ~~~~~~~l~~GvTtv~d~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~g~~~ik 201 (427)
....+.++++||||++|+...... .. ....+...+.+.+.....+.+. ............+. +. ....+++
T Consensus 86 ~~~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~g~~~~~~~~~~~~~~~~~~-~~--~~~~g~~ 162 (390)
T 1onw_A 86 EVALSRLTEAGVTSVVGLLGTDSISRHPESLLAKTRALNEEGISAWMLTGAYHVPSRTITGSVEKDVA-II--DRVIGVK 162 (390)
T ss_dssp CCCHHHHHHTTEEEEEECCCSCCSSCCHHHHHHHHHHHHHHTSEEEEEEECSCSSCCCSSSCHHHHHH-HC--TTEEEEE
T ss_pred HHHHHHHHHCCeeEEecCCCcccccCcHHHHHHHHHHHHhcCCceEEeccccCCCchhhhhhhcchhh-hH--HHhhcce
Confidence 123577899999999998644221 11 2223333333322211111110 00011111111111 11 1122347
Q ss_pred EEEecCCCccCCHHHHHHHHHHHHHcCC------cEEEec-CChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHH
Q 014320 202 FFMAYKGSFMINDELLIEGFKRCKSLGA------LAMVHA-ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTR 274 (427)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~a~~~g~------~v~~H~-e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~ 274 (427)
+.+.++..+..+.++++++++.+++.+. .+++|. ++...++...+
T Consensus 163 ~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~g~~~~h~~~~~~~~~~~~~---------------------------- 214 (390)
T 1onw_A 163 CAISDHRSAAPDVYHLANMAAESRVGGLLGGKPGVTVFHMGDSKKALQPIYD---------------------------- 214 (390)
T ss_dssp EEESSTTSCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEEECSCTTTTHHHHH----------------------------
T ss_pred eeecCCCCCCCCHHHHHHHHHHHhhhhhhhccCceEEEEeCCCHHHHHHHHH----------------------------
Confidence 7777766667889999999888876543 367886 44443332221
Q ss_pred HHHHHHhcCCCE---EEEcCCCHHHH--HHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccH
Q 014320 275 AIRLAEFVNTPL---YVVHVMSMDAM--EEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHN 349 (427)
Q Consensus 275 ~~~~~~~~g~~~---~i~H~~~~~~~--~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~ 349 (427)
+.+..+.++ ...|+.....+ +.++.+++.|. +.. .++ .+|+ ..++
T Consensus 215 ---~~~~g~~~v~~l~~~h~~~~~~~~~~~~~~~~~~~~-~~~-~~~----------------------~~~~---~~~~ 264 (390)
T 1onw_A 215 ---LLENCDVPISKLLPTHVNRNVPLFEQALEFARKGGT-IDI-TSS----------------------IDEP---VAPA 264 (390)
T ss_dssp ---HHHTCCCCGGGEEEECGGGSHHHHHHHHHHHHTTCC-EEE-ETT----------------------CCSS---SCHH
T ss_pred ---HHhccCCceEEeeccccccCHHHHHHHHHHHhcCCc-ccc-ccc----------------------cCCC---CcCH
Confidence 112222222 22455332221 44555555442 111 121 1244 2467
Q ss_pred HHHHHHHhcCC-c--eEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 350 KALQAALATGI-L--QLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 350 ~~l~~~l~~G~-~--~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
+.+|++++.|+ + ++++|||.|..+.... +....+.|+++.++.++.++ .+++..+++++++++++|.||||+
T Consensus 265 ~~l~~~~~~g~~~d~i~l~TD~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~t~npA~~ 339 (390)
T 1onw_A 265 EGIARAVQAGIPLARVTLSSDGNGSQPFFDD----EGNLTHIGVAGFETLLETVQ-VLVKDYDFSISDALRPLTSSVAGF 339 (390)
T ss_dssp HHHHHHHHTTCCGGGEEEECCBTCC-----------------CCCCSHHHHHHHH-HHHHHHCCCHHHHHGGGTHHHHHH
T ss_pred HHHHHHHHcCCCccceEEEccCCCCCcccCC----ccccccccCCCHHHHHHHHH-HHHHHcCCCHHHHHHHHhHHHHHH
Confidence 88999999998 4 5999999765331110 11124568888888888876 566667899999999999999985
|
| >2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo 4YL)-propionic acid, PSI-2 community, structural genomics, structure initiative; HET: DI6; 1.97A {Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.5e-25 Score=216.51 Aligned_cols=294 Identities=15% Similarity=0.082 Sum_probs=174.0
Q ss_pred ccEEEECcEEEcCCC-------ceeeeEEEeCCeEEEeeCCCCCCC--CceEEeCCCCEEeccccccccccccCcCC---
Q 014320 53 SKILIKGGTVVNAHH-------QQIADVYVEDGIVVAVQPNINVGD--DVKVLDATGKFVMPGGIDPHTHLAMEFMG--- 120 (427)
Q Consensus 53 ~~~~i~~~~i~~~~~-------~~~~~i~i~~g~I~~vg~~~~~~~--~~~viD~~g~~v~PG~ID~H~H~~~~~~g--- 120 (427)
++++|+|++|++++. ..+++|+|+||||++||+..+.+. +.++||++|++|+|||||+|+|+......
T Consensus 5 ~~~li~n~~i~t~~~~~~~~~~~~~~~v~I~~g~I~~vg~~~~~~~~~~~~viD~~G~~v~PG~ID~H~H~~~~~~~~~~ 84 (416)
T 2q09_A 5 CERVWLNVTPATLRSDLADYGLLEPHALGVHEGRIHALVPMQDLKGPYPAHWQDMKGKLVTPGLIDCHTHLIFAGSRAEE 84 (416)
T ss_dssp CSEEEEEEEEBCCCTTSSTTCBCSSEEEEEETTEEEEEEEGGGCC--CCTTSEECTTCEEEECEEEEEECCCCCSCCHHH
T ss_pred ccEEEEcCeEeccCcccccccccccceEEEECCEEEEEcChhhccccCCCeEEeCCCCEECCcccccccCcchhhhhHHH
Confidence 468999999998664 247899999999999998644333 45799999999999999999998764110
Q ss_pred ----------------------------CCChhhHHHH----HHHHHcCCceEEecCcCCCCC--cHHHHHHHHHHHhcc
Q 014320 121 ----------------------------SETIDDFFSG----QAAALAGGTTMHIDFVIPING--SLTAGFEAYEKKAKN 166 (427)
Q Consensus 121 ----------------------------~~~~e~~~~~----~~~~l~~GvTtv~d~~~~~~~--~~~~~~~~~~~~~~~ 166 (427)
..+++++... .+.++++||||+.|+...... .....++.+.+...+
T Consensus 85 ~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (416)
T 2q09_A 85 FELRQKGVPYAEIARKGGGIISTVRATRAASEDQLFELALPRVKSLIREGVTTVEIKSGYGLTLEDELKMLRVARRLGEA 164 (416)
T ss_dssp HHHHHTTCCHHHHHHTTCTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTEEEEEEECCSCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHhhhcCCcEeehhhhccCCCHHHHHHHHHHHHHHHHHcCCcEEEeccCcccChHhHHHHHHHHHHHHhh
Confidence 0123333332 366799999999996432211 122334444443322
Q ss_pred ccceec--eec--ccc-C---CChhhHHHHH-HHHH---HcC-CCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEE
Q 014320 167 SCMDYG--FHM--AIT-K---WDEVVSDEME-VMVK---EKG-INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMV 233 (427)
Q Consensus 167 ~~~~~~--~~~--~~~-~---~~~~~~~~~~-~l~~---~~g-~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~ 233 (427)
..+.+. +.+ ... . ..++.++... ++.+ ..+ ++.++.+. +...++++.++++++.|++.|+++++
T Consensus 165 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~g~~v~~ 241 (416)
T 2q09_A 165 LPIRVKTTLLAAHAVPPEYRDDPDSWVETICQEIIPAAAEAGLADAVDVFC---EHIGFSLAQTEQVYLAADQYGLAVKG 241 (416)
T ss_dssp SSSEEEEEEEEETSCCGGGTTCHHHHHHHHHHTHHHHHHHTTCCSEEEEBB---STTSBCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCceEEEeeeccccCCccccCCHHHHHHHHHhhhhHHHHhccccccccccc---CCCcCCHHHHHHHHHHHHHCCCcEEE
Confidence 111111 110 000 0 0112222211 1111 233 44555432 23456899999999999999999999
Q ss_pred ecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEe
Q 014320 234 HAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGE 313 (427)
Q Consensus 234 H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~ 313 (427)
|+....... .+ +.+.+.|. ..+.|+..... +.++++++.|+.++
T Consensus 242 H~~~~~~~~----------------------------~~----~~~~~~g~-~~~~H~~~~~~-~~~~~~~~~g~~~~-- 285 (416)
T 2q09_A 242 HMDQLSNLG----------------------------GS----TLAANFGA-LSVDHLEYLDP-EGIQALAHRGVVAT-- 285 (416)
T ss_dssp EESSSCCCS----------------------------HH----HHHHHTTC-SEEEECTTCCH-HHHHHHHHHTCEEE--
T ss_pred EECCCCchH----------------------------HH----HHHHHcCC-CEEeecccCCH-HHHHHHHHcCCeEE--
Confidence 985432110 00 11112333 23677765543 66788888886554
Q ss_pred cCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchh
Q 014320 314 PVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGI 393 (427)
Q Consensus 314 ~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~ 393 (427)
.||.+.+.... ...+| ++++++.|+++++|||+.|+.... ..
T Consensus 286 ~~p~~~~~~~~-------------~~~~~---------~~~~~~~Gv~~~~gtD~~~~~~~~---------------~~- 327 (416)
T 2q09_A 286 LLPTAFYFLKE-------------TKLPP---------VVALRKAGVPMAVSSDINPGTAPI---------------VS- 327 (416)
T ss_dssp ECHHHHHHTTC-------------CCCCC---------HHHHHHTTCCEEECCCCBTTTBCC---------------CC-
T ss_pred EcCccHHhhcc-------------ccccC---------HHHHHHCCCeEEEecCCCCccCCC---------------CC-
Confidence 57765432100 01234 466899999999999986532100 00
Q ss_pred hHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 394 EERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 394 e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
.+..+. ..+...++|++++++++|.|||++
T Consensus 328 --~~~~~~-~~~~~~~l~~~~al~~~T~~~A~~ 357 (416)
T 2q09_A 328 --LRMAMN-MACTLFGLTPVEAMAGVTRHAARA 357 (416)
T ss_dssp --HHHHHH-HHHHHHCCCHHHHHHHTTHHHHHH
T ss_pred --HHHHHH-HHHHHcCCCHHHHHHHHHHHHHHH
Confidence 111111 233445799999999999999974
|
| >2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate, product-bound, structural genomics, protein STRU initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens str} SCOP: b.92.1.10 c.1.9.17 PDB: 2gok_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.5e-24 Score=209.98 Aligned_cols=294 Identities=16% Similarity=0.130 Sum_probs=170.8
Q ss_pred CccEEEECcEEEcCCC-------ceeeeEEEeCCeEEEeeCCCCCCC----CceEEeCCCCEEeccccccccccccCcC-
Q 014320 52 SSKILIKGGTVVNAHH-------QQIADVYVEDGIVVAVQPNINVGD----DVKVLDATGKFVMPGGIDPHTHLAMEFM- 119 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~-------~~~~~i~i~~g~I~~vg~~~~~~~----~~~viD~~g~~v~PG~ID~H~H~~~~~~- 119 (427)
+.+++|+|+++++++. ..+++|+|+||||++||+..+.+. +.++||++|++|+|||||+|+|+.....
T Consensus 14 ~~~~li~n~~i~t~~~~~~~~~~~~~~~v~I~~g~I~~vg~~~~~~~~~~~~~~viD~~G~~v~PG~ID~H~H~~~~~~~ 93 (419)
T 2puz_A 14 NATALWRNAQLATLNPAMDGIGAVENAVIAVRNGRIAFAGPESDLPDDLSTADETTDCGGRWITPALIDCHTHLVFGGNR 93 (419)
T ss_dssp -CEEEEEEEEEECCCTTSSTTCEEEEEEEEEETTEEEEEEETTSCCGGGSCCSEEEECTTCEEEECEEECCCCCCCSSCC
T ss_pred CCcEEEECCeEeccCcccccCCcccceEEEEECCEEEEEcChhhhhhhccCCCeEEeCCCCEeCcCceecccCccchhhh
Confidence 4679999999998654 257899999999999998654332 2589999999999999999999865310
Q ss_pred ---------CC---------------------CChhhHHH----HHHHHHcCCceEEecCcCCCCC--cHHHHHHHHHHH
Q 014320 120 ---------GS---------------------ETIDDFFS----GQAAALAGGTTMHIDFVIPING--SLTAGFEAYEKK 163 (427)
Q Consensus 120 ---------g~---------------------~~~e~~~~----~~~~~l~~GvTtv~d~~~~~~~--~~~~~~~~~~~~ 163 (427)
+. .+++.+.. ..+.+++.|||++.|+...... .....++.+++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~ 173 (419)
T 2puz_A 94 AMEFEMRLNGATYEEIAKAGGGIVSSVRDTRALSDEVLVAQALPRLDTLLSEGVSTIEIKSGYGLDIETELKMLRVARRL 173 (419)
T ss_dssp HHHHHHHHTTCCHHHHHHTTCSHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTTEEEEEEECCSCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHhcCCCeecchhhhccCCHHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCchhHHHHHHHHHHH
Confidence 00 12222222 2366789999999985322211 122344444444
Q ss_pred hccccceec--e---eccccCC---ChhhHHH-----HHHHHHHc-CCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCC
Q 014320 164 AKNSCMDYG--F---HMAITKW---DEVVSDE-----MEVMVKEK-GINSFKFFMAYKGSFMINDELLIEGFKRCKSLGA 229 (427)
Q Consensus 164 ~~~~~~~~~--~---~~~~~~~---~~~~~~~-----~~~l~~~~-g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~ 229 (427)
.....+.+. + +...... .++..+. +..+. .. ....++.+.. ...++.+.++++++.|+++|+
T Consensus 174 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~g~ 249 (419)
T 2puz_A 174 ETLRPVRIVTSYLAAHATPADYKGRNADYITDVVLPGLEKAH-AEGLADAVDGFCE---GIAFSVKEIDRVFAAAQQRGL 249 (419)
T ss_dssp TTTSSCEEEEEECCTTCCCGGGTTCHHHHHHHTHHHHHHHHH-HTTCCSEECCEES---TTSBCHHHHHHHHHHHHHTTC
T ss_pred hhhcCceEEEEecccccCchhhcccHHHHHHHHHhhhhhhhh-hcccccccccccC---CCCcCHHHHHHHHHHHHHCCC
Confidence 332222111 1 1100000 1111221 11111 22 2344443322 234688999999999999999
Q ss_pred cEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCC
Q 014320 230 LAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQR 309 (427)
Q Consensus 230 ~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~ 309 (427)
++++|+....... .+ +.+.+.+. ..+.|+...+. +.++++++.|+.
T Consensus 250 ~v~~H~~~~~~~~----------------------------~~----~~~~~~g~-~~~~H~~~~~~-~~~~~~~~~g~~ 295 (419)
T 2puz_A 250 PVKLHAEQLSNLG----------------------------GA----ELAASYNA-LSADHLEYLDE-TGAKALAKAGTV 295 (419)
T ss_dssp CBEEEESSSSCCS----------------------------HH----HHHHHTTC-SEEEECTTCCH-HHHHHHHHHTCE
T ss_pred cEEEEecccccCC----------------------------HH----HHHHhcCC-ceehHhccCCH-HHHHHHHHcCCc
Confidence 9999974321100 00 11112333 34778877654 667888888875
Q ss_pred EEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCC
Q 014320 310 VIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNG 389 (427)
Q Consensus 310 v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G 389 (427)
+. .||.+.+.. .. . ..+| ++.+++.|+++++|||+.|.....
T Consensus 296 ~~--~~p~~~~~l----~~------~---~~~~---------~~~~~~~Gv~~~lgsD~~~~~~~~-------------- 337 (419)
T 2puz_A 296 AV--LLPGAFYAL----RE------K---QLPP---------VQALRDAGAEIALATDCNPGTSPL-------------- 337 (419)
T ss_dssp EE--ECHHHHHHH----TC------C---CCCC---------HHHHHHHTCCEEECCCCCSSSCCB--------------
T ss_pred EE--ECCchhhhh----cc------c---cccc---------HHHHHHCCCeEEEECCCCCCCCcc--------------
Confidence 54 466432210 00 0 1233 455788899999999986542100
Q ss_pred CchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 390 VNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 390 ~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
. .+...+...+...++|++++++++|.|||+.
T Consensus 338 -~----~l~~~~~~~~~~~~ls~~~al~~~T~~~A~~ 369 (419)
T 2puz_A 338 -T----SLLLTMNMGATLFRMTVEECLTATTRNAAKA 369 (419)
T ss_dssp -C----CHHHHHHHHHHHHCCCHHHHHHHTTHHHHHH
T ss_pred -c----cHHHHHHHhccccCCCHHHHHHHHHHHHHHH
Confidence 0 1111111223345799999999999999974
|
| >2vhl_A N-acetylglucosamine-6-phosphate deacetylase; N- acetyleglucosamine-6-phosphate, carbohydrate metabolism, hydrolase; HET: GLP PGE; 2.05A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-26 Score=224.79 Aligned_cols=183 Identities=15% Similarity=0.160 Sum_probs=116.8
Q ss_pred CccEEEECcEEEcCCCc-eeeeEEEeCCeEEEeeCCCCCCCCceEEeCC-CCEEeccccccccccccCc-CCCCChhhHH
Q 014320 52 SSKILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDAT-GKFVMPGGIDPHTHLAMEF-MGSETIDDFF 128 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~~-~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~-g~~v~PG~ID~H~H~~~~~-~g~~~~e~~~ 128 (427)
..+++|+|++|++++.. .+++|+|+||||++|++..+..++.++||++ |++|+|||||+|+|+.++. .+..++++++
T Consensus 2 ~~~~li~~~~v~~~~~~~~~~~v~I~~g~I~~ig~~~~~~~~~~viD~~~g~~v~PGlID~H~H~~~~~~~~~~~~e~~~ 81 (396)
T 2vhl_A 2 AESLLIKDIAIVTENEVIKNGYVGINDGKISTVSTERPKEPYSKEIQAPADSVLLPGMIDIHIHGGYGADTMDASFSTLD 81 (396)
T ss_dssp -CCEEEEEEEEECSSCEEEEEEEEEETTEEEEEESSCCSSCCSEEEECCTTCEEEECEEEEEECEETTEEGGGCSHHHHH
T ss_pred CccEEEEeeEEEcCCccccCceEEEECCEEEEEECCCCCCCCCceEcCCCCCEEcCCEEEEeecCCcCccccCCCHHHHH
Confidence 45789999999998763 5789999999999999321111345899999 9999999999999997641 1234678888
Q ss_pred HHHHHHHcCCceEEecCcCCCCC-cHHHHHHHHHHHhcc------ccceeceec--ccc-------C----CChhhHHHH
Q 014320 129 SGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN------SCMDYGFHM--AIT-------K----WDEVVSDEM 188 (427)
Q Consensus 129 ~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~--~~~-------~----~~~~~~~~~ 188 (427)
..+++++++||||++|+....+. .....++...+...+ ....++++. +.. . ......+.+
T Consensus 82 ~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 161 (396)
T 2vhl_A 82 IMSSRLPEEGTTSFLATTITQEHGNISQALVNAREWKAAEESSLLGAELLGIHLEGPFVSPKRAGAQPKEWIRPSDVELF 161 (396)
T ss_dssp HHHHHGGGGTEEEEEEECCSCCHHHHHHHHHHHHHHHHHCSGGGSSSEEEEEEEECSSSCGGGCTTSCGGGCCCCCHHHH
T ss_pred HHHHHHHcCCeeEEEecccCCCHHHHHHHHHHHHHHHhcccccccccceEEEeeecCccCccccCCCCHHHccCCCHHHH
Confidence 88999999999999998643222 122234444443321 111222221 110 0 001124456
Q ss_pred HHHHHHcCCCeEEEE-EecCCCccCCHHHHHHHHHHHHHcCCcEEE-ecC-ChhhH
Q 014320 189 EVMVKEKGINSFKFF-MAYKGSFMINDELLIEGFKRCKSLGALAMV-HAE-NGDAV 241 (427)
Q Consensus 189 ~~l~~~~g~~~ik~~-~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~-H~e-~~~~~ 241 (427)
+++. +.+.+.+|++ +.+... .+.++++.|+++|+++++ |+. +...+
T Consensus 162 ~~~~-~~~~~~ik~~~~~p~~~------~~~~~~~~a~~~g~~v~~gH~~~~~~~~ 210 (396)
T 2vhl_A 162 KKWQ-QEAGGLIKIVTLAPEED------QHFELIRHLKDESIIASMGHTDADSALL 210 (396)
T ss_dssp HHHH-HHTTTCEEEEEECGGGS------GGGHHHHHHHHTTCEEEECSBCCCHHHH
T ss_pred HHHH-HhcCCcceEEEECCCCC------CHHHHHHHHHHCCCEEeecccCCCHHHH
Confidence 6665 4566677754 333221 123677889999999998 974 55433
|
| >4f0l_A Amidohydrolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-24 Score=217.18 Aligned_cols=305 Identities=14% Similarity=-0.000 Sum_probs=184.7
Q ss_pred CccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcC-CC---------
Q 014320 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS--------- 121 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~-g~--------- 121 (427)
|.+++++|+.+.+ ...++++|+|+||||++||+..+ .++||++|++|+|||||+|+|+.++.. |.
T Consensus 11 m~~l~~~~~~~~~-~~~~~~~v~I~~g~I~~Ig~~~~----~~~iD~~g~~v~PGlID~H~H~~~~~~rg~~~~~~~~~~ 85 (458)
T 4f0l_A 11 QHFIHARQALLPD-GWAENVRIGIAGGVICSIETGVL----AGPDDERQSVVVAGMANLHSHAFQYGMAGLAERRGPSAD 85 (458)
T ss_dssp CEEEEEEEEEETT-EEEEEEEEEEETTEEEEEECSCC----CCTTCEEEEEEEECEEEEEECGGGGGGTTSSCBCCSCSS
T ss_pred hhHhhhcceeccC-ccccCceEEEECCEEEEEeCCCc----cccccCCCCEEccCceecccchhhhhhcccccccccCCC
Confidence 4567777776632 22568999999999999998643 346899999999999999999964421 10
Q ss_pred ---------------CChhhHHHH----HHHHHcCCceEEecCcCCCC-------Cc----HHHHHHHHHHHhcccccee
Q 014320 122 ---------------ETIDDFFSG----QAAALAGGTTMHIDFVIPIN-------GS----LTAGFEAYEKKAKNSCMDY 171 (427)
Q Consensus 122 ---------------~~~e~~~~~----~~~~l~~GvTtv~d~~~~~~-------~~----~~~~~~~~~~~~~~~~~~~ 171 (427)
.++++++.. ...++++||||+.|+..... .. ....++...+.+.+..+..
T Consensus 86 ~~~~w~~~~~~~~~~~~~e~~~~~~~~~~~e~l~~GvTtv~d~~~~~~~~~g~~~~~~~~~~~~~~~a~~~~g~r~~~~~ 165 (458)
T 4f0l_A 86 SFWSWREIMYKFALTMTPEQAEAVALRLYVDMLEAGFTRVGEFHYLHHDCDGTPYANLSEMADRIAAAATTAGMGLTLLP 165 (458)
T ss_dssp TTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTTEEEEEEEECCCSCTTSCCCSSTTHHHHHHHHHHHHHTCEEEEEE
T ss_pred cHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHhcCCcEEEeeeeeccccccccccchhhhHHHHHHHHHHcCCeEEEec
Confidence 123344333 33468899999999632110 01 2344555566665543322
Q ss_pred ceec-----cc---------cCCChhhHHHHHHHHHH-cCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-
Q 014320 172 GFHM-----AI---------TKWDEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA- 235 (427)
Q Consensus 172 ~~~~-----~~---------~~~~~~~~~~~~~l~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~- 235 (427)
.+.. .. ....++..+.++++.+. .+...+++.+.+++.+.++++.++.+++.|+ |+++++|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~--g~~v~~H~~ 243 (458)
T 4f0l_A 166 VFYAHSGFGGAAANEGQRRFINDPERFARLIEGCRKTLEGFEGAVLGVAPHSLRAVTPDELDSVTQLLP--DAPVHIHVA 243 (458)
T ss_dssp EECCEEETTTEECCGGGTTTCCCHHHHHHHHHHHHHHHTTCTTCEECBEECBTTTSCHHHHHHHTTSST--TSCEEEEES
T ss_pred chhccccccccCCchhhhhhhcCHHHHHHHHHHHHHHhccCCceEEEEecCCcCcCCHHHHHHHHHHhc--CCCEEEEeC
Confidence 1110 00 01112233333433321 2334566667788888899999999999998 99999996
Q ss_pred CChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecC
Q 014320 236 ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPV 315 (427)
Q Consensus 236 e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~ 315 (427)
|+..++..+.+.+ |.. .+. .+......+.+..+.|+...+. +.++.+++.|+.+.. |
T Consensus 244 e~~~~~~~~~~~~---g~~----------------~~~-~l~~~g~l~~~~~~~H~~~~~~-~~~~~l~~~g~~~~~--~ 300 (458)
T 4f0l_A 244 EQVKEVEDCIAWS---GKR----------------PVE-WLLDHQDVTARWCLIHATHMSD-EETKHMAKAGAIAGL--C 300 (458)
T ss_dssp CSHHHHHHHHHHH---SSC----------------HHH-HHHHHSCCCTTEEEEECCSCCH-HHHHHHHHHTCEEEE--C
T ss_pred CCHHHHHHHHHHh---CCC----------------HHH-HHHHcCCCCCCeEEEEeccCCH-HHHHHHHHcCCeEEE--C
Confidence 6777665554322 210 011 1111222456778889876654 567788888876665 7
Q ss_pred ccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhH
Q 014320 316 VSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEE 395 (427)
Q Consensus 316 p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~ 395 (427)
|...... +.. .+| ++++++.|+.+++|||..+.... -.+.
T Consensus 301 p~s~~~l-----------~~~---~~~---------~~~~~~~Gv~v~lgtD~~~~~~~-----------------~~~~ 340 (458)
T 4f0l_A 301 PVTEANL-----------GDG---TFN---------ATEFAAAGGKFGIGSDSNVLIGI-----------------GDEL 340 (458)
T ss_dssp HHHHHHT-----------TCC---CCC---------HHHHHHTTCEEEECCBTTSSCCH-----------------HHHH
T ss_pred ccccccc-----------cCC---Ccc---------HHHHHHCCCeEEEECCCCCCCCH-----------------HHHH
Confidence 7532111 111 133 56688999999999994221110 1133
Q ss_pred hHHHHHHHHHh--------cCCCCHHHHHHHHchhhhcC
Q 014320 396 RMHLVWDTMVE--------SGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 396 ~l~~~~~~~~~--------~~~l~l~~~v~~~t~npA~~ 426 (427)
+....+..... ...++++++++++|.|||+.
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~T~~~A~~ 379 (458)
T 4f0l_A 341 RQLEYSQRLYHRARNVLAANEGSTGRALFDGAVLGGNIA 379 (458)
T ss_dssp HHHHHHHHHHHTCSSCSCSTTSBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccCccccCCcccCCHHHHHHHHHHHHHHH
Confidence 44443333322 13599999999999999974
|
| >2bb0_A Imidazolonepropionase; TIM barrel, hydrolase; 2.00A {Bacillus subtilis} SCOP: b.92.1.10 c.1.9.17 PDB: 2g3f_A | Back alignment and structure |
|---|
Probab=99.92 E-value=8.7e-24 Score=208.71 Aligned_cols=292 Identities=16% Similarity=0.159 Sum_probs=170.4
Q ss_pred ccEEEEC-cEEEcCCC--------------ceeeeEEEeCCeEEEeeCCC-C--CCCCceEEeCCCCEEecccccccccc
Q 014320 53 SKILIKG-GTVVNAHH--------------QQIADVYVEDGIVVAVQPNI-N--VGDDVKVLDATGKFVMPGGIDPHTHL 114 (427)
Q Consensus 53 ~~~~i~~-~~i~~~~~--------------~~~~~i~i~~g~I~~vg~~~-~--~~~~~~viD~~g~~v~PG~ID~H~H~ 114 (427)
.+++|+| ++|++++. ..+++|+|+||||++||+.. . .+ ..++||++|++|+|||||+|+|+
T Consensus 5 ~d~li~n~g~I~t~~~~~~~~~~~~~~~~~~~~~~v~I~~g~I~~vg~~~~~~~~~-~~~viD~~G~~v~PGfID~H~H~ 83 (421)
T 2bb0_A 5 IDTILINIGQLLTMESSGPRAGKSMQDLHVIEDAVVGIHEQKIVFAGQKGAEAGYE-ADEIIDCSGRLVTPGLVDPHTHL 83 (421)
T ss_dssp EEEEEEEEEEECCCCCSSCCCGGGGTCCCCEEEEEEEEETTEEEEEEETTTTTTCE-EEEEEECTTCEEEECEEECCBCC
T ss_pred ccEEEECCcEEEecCCCccccccccccccccccceEEEECCEEEEEecccccccCC-CCeEEeCCCCEeccCeeccCcCc
Confidence 4789999 99998653 24789999999999999754 2 22 35799999999999999999998
Q ss_pred ccCcC----------C---------------------CCChhhHHHH----HHHHHcCCceEEecCcCCCCC--cHHHHH
Q 014320 115 AMEFM----------G---------------------SETIDDFFSG----QAAALAGGTTMHIDFVIPING--SLTAGF 157 (427)
Q Consensus 115 ~~~~~----------g---------------------~~~~e~~~~~----~~~~l~~GvTtv~d~~~~~~~--~~~~~~ 157 (427)
..... + ..+++.+... .+.+++.||||+.|+...... .....+
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~gggi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~ 163 (421)
T 2bb0_A 84 VFGGSREKEMNLKLQGISYLDILAQGGGILSTVKDTRAASEEELLQKAHFHLQRMLSYGTTTAEVKSGYGLEKETELKQL 163 (421)
T ss_dssp CCCSCCGGGHHHHHTTCCHHHHHHTTCTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTEEEEEEECCSCCSHHHHHHHH
T ss_pred cccccchHHHHHHHhCCCHHHHhhcCCCcccchhhhhcCCHHHHHHHHHHHHHHHHhcCceEEEeccccCcCccchHHHH
Confidence 65410 0 0122222222 366789999999985322211 112334
Q ss_pred HHHHHHhccccceec--e---eccccCC---ChhhHHHHHHHHH---Hc-CCCeEEEEEecCCCccCCHHHHHHHHHHHH
Q 014320 158 EAYEKKAKNSCMDYG--F---HMAITKW---DEVVSDEMEVMVK---EK-GINSFKFFMAYKGSFMINDELLIEGFKRCK 225 (427)
Q Consensus 158 ~~~~~~~~~~~~~~~--~---~~~~~~~---~~~~~~~~~~l~~---~~-g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~ 225 (427)
+.+++......+.+. + +...... .++..+.+.++.+ .. ....++.+. +...++.++++++++.|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~l~~~~~~a~ 240 (421)
T 2bb0_A 164 RVAKKLHESQPVDLVSTFMGAHAIPPEYQNDPDDFLDQMLSLLPEIKEQELASFADIFT---ETGVFTVSQSRRYLQKAA 240 (421)
T ss_dssp HHHHHHHHHSSSEEEEEEEEESSCCGGGTTCHHHHHHHHHTTHHHHHHTTCCSEEEEBB---CTTSBCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCceEEEEeeccccCChhhcccHHHHHHHHHHhhHHhhccCccccccccC---CcCCCCHHHHHHHHHHHH
Confidence 444443322111111 1 1100000 1112222211111 12 244454432 223468999999999999
Q ss_pred HcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhh
Q 014320 226 SLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARK 305 (427)
Q Consensus 226 ~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~ 305 (427)
++|+++++|+....... .+ +.+...+. ..+.|+...+. +.++++++
T Consensus 241 ~~g~~v~~H~~~~~~~~----------------------------~~----~~~~~~g~-~~~~H~~~~~~-~~i~~~~~ 286 (421)
T 2bb0_A 241 EAGFGLKIHADEIDPLG----------------------------GA----ELAGKLKA-VSADHLVGTSD-EGIKKLAE 286 (421)
T ss_dssp HTTCEEEEEECSSSCCS----------------------------HH----HHHHHTTC-SEEEECTTCCH-HHHHHHHH
T ss_pred HCCCCEEEEeccccccC----------------------------HH----HHHHHcCC-cEEhhhhcCCH-HHHHHHHH
Confidence 99999999974321100 00 11112332 34778876654 67888888
Q ss_pred cCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCC-ChhhhhcCCCCCc
Q 014320 306 AGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAF-NSTQKAFGIDDFR 384 (427)
Q Consensus 306 ~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~-~~~~~~~~~~~~~ 384 (427)
.|+.++ .||.+.+... +.. .+| ++.+++.|+.+++|||+.|. ++..
T Consensus 287 ~g~~~~--~~p~~~~~l~----------~~~---~~~---------~~~~~~~Gv~v~lgtD~~~~~~~~~--------- 333 (421)
T 2bb0_A 287 AGTIAV--LLPGTTFYLG----------KST---YAR---------ARAMIDEGVCVSLATDFNPGSSPTE--------- 333 (421)
T ss_dssp HTCEEE--ECHHHHHHTT----------CCC---CCC---------HHHHHHTTCCEEECCCBBTTTBCCC---------
T ss_pred cCCeEE--ECCchhhhhc----------ccc---cch---------HHHHHHCCCeEEEeCCCCCCCCccc---------
Confidence 887554 4775432110 001 123 56689999999999997552 1110
Q ss_pred cCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 385 KIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 385 ~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
.+...+...+...++|++++++++|.|||+.
T Consensus 334 -----------~~~~~~~~~~~~~~ls~~eal~~~T~~~A~~ 364 (421)
T 2bb0_A 334 -----------NIQLIMSIAALHLKMTAEEIWHAVTVNAAYA 364 (421)
T ss_dssp -----------CHHHHHHHHHHHSCCCHHHHHHHTTHHHHHH
T ss_pred -----------CHHHHHHHHhcccCCCHHHHHHHHHHHHHHH
Confidence 1111111233456899999999999999974
|
| >3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens} PDB: 3t81_A 3t8l_A | Back alignment and structure |
|---|
Probab=99.92 E-value=7.7e-24 Score=216.99 Aligned_cols=284 Identities=18% Similarity=0.129 Sum_probs=180.8
Q ss_pred CccEEEECcEEEcCCC--ceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHH
Q 014320 52 SSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS 129 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~--~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~ 129 (427)
+.+++|+|++|+++.. ...++|+|+||||++|++.....++.++||++|++|+|||||+|+|+..+ ..+++.+
T Consensus 34 ~~dlli~n~~ivd~~~~~~~~~dI~I~~G~I~~Vg~~~~~~~~~~vID~~G~~v~PG~ID~H~Hl~~~---~~~~~~~-- 108 (608)
T 3nqb_A 34 RFDVLITGGTLVDVVTGELRPADIGIVGALIASVHEPASRRDAAQVIDAGGAYVSPGLIDTHMHIESS---MITPAAY-- 108 (608)
T ss_dssp CEEEEEESCEEECTTTCCEEECEEEEETTEEEEEECTTSCCCEEEEEECTTSEEEECEEEEEECGGGG---TSCHHHH--
T ss_pred CCCEEEECeEEEECCCCeEEeeEEEEECCEEEEecCCCCCCCCCeEEeCCCCEEecCeEecccCcccc---cCCHHHH--
Confidence 5789999999999764 56789999999999999865334567899999999999999999999765 2344444
Q ss_pred HHHHHHcCCceEEecCcCCCCC-cHHHHHHHHHHHhccccceeceec-ccc--------CCChhhHHHHHHHHHHcCCCe
Q 014320 130 GQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHM-AIT--------KWDEVVSDEMEVMVKEKGINS 199 (427)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~l~~~~g~~~ 199 (427)
.+.++.+||||++++...... ...+.++...+.+.+...++.+.. +.. .......++++++.++.++.+
T Consensus 109 -~~~al~~GvTtvv~~p~~~~~v~g~~~~~~~l~~a~~~~~~v~~~~p~~~P~~~~~~~~g~~~~~~el~~l~~~~~v~g 187 (608)
T 3nqb_A 109 -AAAVVARGVTTIVWDPHEFGNVHGVDGVRWAAKAIENLPLRAILLAPSCVPSAPGLERGGADFDAAILADLLSWPEIGG 187 (608)
T ss_dssp -HHHHHTTTEEEEEECCHHHHHHHTHHHHHHHHHHHTTCSSEEEEEECCCSSSSTTSCCCSCCCCHHHHHHHHTSTTEEE
T ss_pred -HHHHHhCCeEEEEcCCccccccCCHHHHHHHHHHhhhcCcEEEEeccccCCCCCccccCcccCCHHHHHHHHhccCcce
Confidence 678999999999976422111 123445555555544444433222 110 011123566777774567888
Q ss_pred EEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHH
Q 014320 200 FKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLA 279 (427)
Q Consensus 200 ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~ 279 (427)
++.++++.+. ..+++.+.+.++.|++.|+++.+|+.+.... . +...
T Consensus 188 lgE~~~~~~v-~~~d~~l~~~l~~A~~~g~pV~~Ha~~~~~~--~-------------------------------L~~~ 233 (608)
T 3nqb_A 188 IAEIMNMRGV-IERDPRMSGIVQAGLAAEKLVCGHARGLKNA--D-------------------------------LNAF 233 (608)
T ss_dssp EEEECCHHHH-HTTCHHHHHHHHHHHHHTCEEEECCTTCCHH--H-------------------------------HHHH
T ss_pred eeEeeccCCc-CCCcHHHHHHHHHHHHcCCEEEEcCCCCCHH--H-------------------------------HHHH
Confidence 8888865432 2456788999999999999999998653221 0 1111
Q ss_pred HhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHh--
Q 014320 280 EFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALA-- 357 (427)
Q Consensus 280 ~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~-- 357 (427)
...|.. .+|.+.... +.++.+ +.|..+... .. . ..+.+.+.+.++
T Consensus 234 ~~aGv~--~~H~~~~~e-ea~e~l-~~G~~i~i~-gs-------------~---------------~~~~~~l~~~i~~~ 280 (608)
T 3nqb_A 234 MAAGVS--SDHELVSGE-DLMAKL-RAGLTIELR-GS-------------H---------------DHLLPEFVAALNTL 280 (608)
T ss_dssp HHTTCC--EECCCCSHH-HHHHHH-HTTCEEEEE-SS-------------S---------------GGGHHHHHHHHHHH
T ss_pred HHcCCC--eeeccCCHH-HHHHHH-HCCCEEEEe-cc-------------c---------------cccHHHHHHHHHhH
Confidence 223444 378766542 444544 467665532 10 0 011233444444
Q ss_pred --cCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 358 --TGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 358 --~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
.|+.++++||+.+...... +..++..+...++. +++++++++++|.|||++
T Consensus 281 ~~~g~~v~lgTD~~~p~~~~~-----------------~g~l~~~v~~~~~~-Gls~~eal~~aT~n~A~~ 333 (608)
T 3nqb_A 281 GHLPQTVTLCTDDVFPDDLLQ-----------------GGGLDDVVRRLVRY-GLKPEWALRAATLNAAQR 333 (608)
T ss_dssp TSCCTTEEEECBSCCHHHHHH-----------------TCSHHHHHHHHHHT-TCCHHHHHHHHTHHHHHH
T ss_pred hhcCceEEEecCCCCCcchhh-----------------hcchHHHHHHHHHc-CCCHHHHHHHHHHHHHHH
Confidence 7999999999642111110 01234444334443 799999999999999974
|
| >3mdu_A N-formimino-L-glutamate iminohydrolase; amonohydralase family, N-formimino-L-glutamate iminohydrolas guanidino-L-glutamate; HET: NGQ; 1.40A {Pseudomonas aeruginosa} PDB: 3mdw_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-24 Score=213.34 Aligned_cols=299 Identities=14% Similarity=0.049 Sum_probs=183.1
Q ss_pred EECcEEEcCCC-ceeeeEEE-eCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCC--------------
Q 014320 57 IKGGTVVNAHH-QQIADVYV-EDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG-------------- 120 (427)
Q Consensus 57 i~~~~i~~~~~-~~~~~i~i-~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g-------------- 120 (427)
+..++++.+++ .++++|+| +||||++||+..+. .+++|++| +|+|||||+|+|+.+....
T Consensus 4 ~~~~~~~~~~~~~~~~~v~i~~~g~I~~ig~~~~~---~~~~d~~g-~v~PGfId~H~H~~~~~~rg~~~~~~~~~~~l~ 79 (453)
T 3mdu_A 4 IFAERALLPEGWARNVRFEISADGVLAEIRPDANA---DGAERLGG-AVLPGMPNLHSHAFQRAMAGLAEVAGNPNDSFW 79 (453)
T ss_dssp EEEEEEEETTEEEEEEEEEECTTSBEEEEESSCCC---TTSEECSS-CEEECEEEEEECGGGGGGTTTTCCCSSTTCCHH
T ss_pred cchhheecCCceecCeEEEEecCCEEEEecCCCCc---ccccccCC-cccccceecccchHHHhhccccccccCCCCcHH
Confidence 44566676666 57899999 89999999986542 24579999 9999999999998654211
Q ss_pred -----------CCChhhHHHHH----HHHHcCCceEEecCcCCCC-------C----cHHHHHHHHHHHhccccceecee
Q 014320 121 -----------SETIDDFFSGQ----AAALAGGTTMHIDFVIPIN-------G----SLTAGFEAYEKKAKNSCMDYGFH 174 (427)
Q Consensus 121 -----------~~~~e~~~~~~----~~~l~~GvTtv~d~~~~~~-------~----~~~~~~~~~~~~~~~~~~~~~~~ 174 (427)
..++++++..+ ..++++||||+.|+..... . .....++..++.+.+..+...+.
T Consensus 80 ~wl~~~~~~~~~~~~e~~~~~a~~~~~e~l~~GvTtv~d~~~~~~~~~g~~~~~~~~~~~~~~~a~~~~Gir~~~~~~~~ 159 (453)
T 3mdu_A 80 TWRELMYRMVARLSPEQIEVIACQLYIEMLKAGYTAVAEFHYVHHDLDGRSYADPAELSLRISRAASAAGIGLTLLPVLY 159 (453)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTEEEEEEEECCCSCTTSCCCSSTTHHHHHHHHHHHHHTCEEEEEECBC
T ss_pred HHHHHHhhhhhhCCHHHHHHHHHHHHHHHHHcCCcEEEEeeEeccccccccccchhhHHHHHHHHHHHhCCeEEEecchh
Confidence 12444554433 3478999999999642110 0 12345566666666543321111
Q ss_pred c--cc------------cCCChhhHHHHHHHHH---HcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-C
Q 014320 175 M--AI------------TKWDEVVSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-E 236 (427)
Q Consensus 175 ~--~~------------~~~~~~~~~~~~~l~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e 236 (427)
. +. ....++..+.++++.+ ..+. ++.+++++.+.+++++++++++.|+ .|+++++|+ |
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~p~~~~~~~~e~l~~~~~~A~-~g~~v~~H~~e 235 (453)
T 3mdu_A 160 SHAGFGGQPASEGQRRFINGSEAYLELLQRLRAPLEAAGH---SLGLCFHSLRAVTPQQIATVLAAGH-DDLPVHIHIAE 235 (453)
T ss_dssp CBSSTTTCBCCGGGGGGCCCHHHHHHHHHHHHHHHHHHTC---EECEEEEETTTSCHHHHHHHHTSSC-TTSCEEEEESC
T ss_pred ccccccCCCCchhhhhccCCHHHHHHHHHHHHHHhhcCCC---eEEEecCCCCcCCHHHHHHHHHHHh-cCCCEEEEeCC
Confidence 0 00 0111223333333332 1232 5556777788899999999999999 999999995 7
Q ss_pred ChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCc
Q 014320 237 NGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVV 316 (427)
Q Consensus 237 ~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p 316 (427)
+..++..+.+. .|.. .+.. +......+.+..+.|+...+. +.++++++.|+.+.. ||
T Consensus 236 ~~~e~~~~~~~---~g~~----------------~v~~-l~~~g~~~~~~~~~H~~~~~~-~~i~~la~~g~~v~~--~P 292 (453)
T 3mdu_A 236 QQKEVDDCQAW---SGRR----------------PLQW-LYENVAVDQRWCLVHATHADP-AEVAAMARSGAVAGL--CL 292 (453)
T ss_dssp SHHHHHHHHHH---HSSC----------------HHHH-HHHHSCCCTTEEEEECCSCCH-HHHHHHHHHTCEEEE--CH
T ss_pred CHHHHHHHHHH---hCCC----------------HHHH-HHHcCCCCCCeEEEEcCCCCH-HHHHHHHHcCCEEEE--Cc
Confidence 87776655432 2210 1111 122223456788999887654 668888888876664 77
Q ss_pred cceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHh
Q 014320 317 SGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEER 396 (427)
Q Consensus 317 ~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~ 396 (427)
...... +.. .+| ++++++.|+.+++|||..+..... .+.+
T Consensus 293 ~sn~~l-----------g~g---~~p---------~~~~~~~Gv~v~lgtD~~~~~~~~-----------------~~~~ 332 (453)
T 3mdu_A 293 STEANL-----------GDG---IFP---------ATDFLAQGGRLGIGSDSHVSLSVV-----------------EELR 332 (453)
T ss_dssp HHHHHT-----------TCC---CCC---------HHHHHHTTCEEEECCBTCSCCCHH-----------------HHHH
T ss_pred hhHhhc-----------CCC---CCC---------HHHHHHCCCEEEEECCCCCCCCHH-----------------HHHH
Confidence 532211 111 234 456889999999999953211111 1223
Q ss_pred HHHHHHHHHh---------cCCCCHHHHHHHHchhhhcC
Q 014320 397 MHLVWDTMVE---------SGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 397 l~~~~~~~~~---------~~~l~l~~~v~~~t~npA~~ 426 (427)
......+... ..+++++++++++|.|||++
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~a~~ 371 (453)
T 3mdu_A 333 WLEYGQRLRDRKRNRLYRDDQPMIGRTLYDAALAGGAQA 371 (453)
T ss_dssp HHHHHHHHHHTCSCCSCBTTBCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCccccCcccCCCHHHHHHHHHHHHHHH
Confidence 3332222211 12799999999999999974
|
| >4gy7_A Urease; JACK bean, hydrolase, ME binding, nickel; HET: CME KCX; 1.49A {Canavalia ensiformis} PDB: 3la4_A* 4h9m_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-26 Score=243.01 Aligned_cols=171 Identities=15% Similarity=0.211 Sum_probs=125.3
Q ss_pred CccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCC------------CCCCCceEEeCCCCEEeccccccccccccCcC
Q 014320 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNI------------NVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~------------~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~ 119 (427)
..|++|+|++|+|+.++..++|.|+||||++||+.. ..+++++|||++|++|+|||||+|+|+.++
T Consensus 336 ~~DLVItNA~IVD~tGi~kADI~IkDGRIaAIGkagnpD~~dgV~pdl~ig~gtEVIDA~GkiVtPGfID~HvHl~~P-- 413 (840)
T 4gy7_A 336 SLDTVITNAVIIDYTGIIKADIGIKDGLIASIGKAGNPDIMNGVFSNMIIGANTEVIAGEGLIVTAGAIDCHVHYICP-- 413 (840)
T ss_dssp SCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECCBCTTTCSSCCTTSBCCTTCEEEECTTCEEEECEEEEEEECCCT--
T ss_pred cCCEEEeCeEEECCCCeEEeeEEEECCEEEEEeccCCcccccccccccccCCCCEEEECCCCEEccCeeeeccCCCCC--
Confidence 468999999999998888999999999999999632 234578999999999999999999998765
Q ss_pred CCCChhhHHHHHHHHHcCCceEEecCcCCCC--------CcHHHHHHHHHHHhccccceeceeccccCCChhhHHHHHHH
Q 014320 120 GSETIDDFFSGQAAALAGGTTMHIDFVIPIN--------GSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM 191 (427)
Q Consensus 120 g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 191 (427)
+ ....++.+||||+++.+.... ..................+++++........ .+.+.++
T Consensus 414 ~---------~~~eALasGVTTvv~gGtgp~~~~~~~~~~~~~~~~~~~l~a~~~~~vn~g~~~~~~~~~---~~~L~el 481 (840)
T 4gy7_A 414 Q---------LVYEAISSGITTLVGGGTGPAAGTRATTCTPSPTQMRLMLQSTDDLPLNFGFTGKGSSSK---PDELHEI 481 (840)
T ss_dssp H---------HHHHHHHHTEEEEEEECSSSCHHHHHSSCCCSHHHHHHHHHHTTTSSSEEEEEEECCCSS---SHHHHHH
T ss_pred C---------chHHHHHhhHHHHHhCCCceecCcccccccchHHHHHHHHhhhhcceeEEEEeCCCCccc---HHHHHHh
Confidence 1 134568899999997643211 0122233333344444556666554333222 2345666
Q ss_pred HHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhH
Q 014320 192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAV 241 (427)
Q Consensus 192 ~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~ 241 (427)
. ..|+.++|.+..+. .+++.+.++++.++++|.++.+|+++....
T Consensus 482 ~-~aGa~g~K~~~~~~----~t~~~i~~aL~~A~e~g~~V~ih~e~~~~~ 526 (840)
T 4gy7_A 482 I-KAGAMGLKLHEDWG----STPAAIDNCLTIAEHHDIQINIHTDTLNEA 526 (840)
T ss_dssp H-HHTCSEEEEETTTC----CCHHHHHHHHHHHHHHTCEEEEECCTTCSS
T ss_pred h-hceeeEEEeccccC----CCHHHHHHHHHHHHHhCCEEEEeccCcchh
Confidence 5 68999999887543 578999999999999999999998765443
|
| >3icj_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structur initiative; HET: KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.4e-25 Score=223.62 Aligned_cols=302 Identities=16% Similarity=0.163 Sum_probs=184.4
Q ss_pred cEEEECcEEEcCCCc--eeeeEEEeCCeEEEeeCCCCC-----CCCceEEeCCCCEEeccccccccccccC--------c
Q 014320 54 KILIKGGTVVNAHHQ--QIADVYVEDGIVVAVQPNINV-----GDDVKVLDATGKFVMPGGIDPHTHLAME--------F 118 (427)
Q Consensus 54 ~~~i~~~~i~~~~~~--~~~~i~i~~g~I~~vg~~~~~-----~~~~~viD~~g~~v~PG~ID~H~H~~~~--------~ 118 (427)
+++|+|++|++++.. ...+|+|+||||++||+..+. .++.++||++|++|+|||||+|+|+..+ +
T Consensus 37 ~~li~ng~I~t~~~~~~~~~~v~v~~g~I~~vg~~~~~~~~~~~~~~~viD~~G~~v~PGfiD~H~H~~~~g~~~~~~dl 116 (534)
T 3icj_A 37 MKALINGTIYTSFSPVKKVSGLVISNERVLYAGDSSTALRIAELAGGEIIDLKGKFVMPAFFDSHLHLDELGMSLEMVDL 116 (534)
T ss_dssp EEEEESSEEEEEETTEEEESEEEEETTEEEEEECHHHHHHHHHHHTCEEEECTTCEEEECEEEEEECHHHHHHHHHSEEC
T ss_pred CEEEECCEEECCCCCCceeeEEEEECCEEEEEcChHHHHhhccCCCCEEEECCCCEEecCEeehhhhhhhhhhhcCccCC
Confidence 479999999997764 468999999999999986432 2457899999999999999999996542 0
Q ss_pred C------------------------------------------------------------------CC-----------
Q 014320 119 M------------------------------------------------------------------GS----------- 121 (427)
Q Consensus 119 ~------------------------------------------------------------------g~----------- 121 (427)
. |.
T Consensus 117 ~~~~s~~e~~~~l~~~~~~wi~g~G~~~~~~~~~pt~~~LD~~~~Pv~l~~~~~H~~~~Ns~AL~~~gi~~t~~p~G~tG 196 (534)
T 3icj_A 117 RGVKSMEELVERVKKGRGRIIFGFGWDQDELGRWPTREDLDVIDRPVFLYRRCFHVAVMNSKMIDLLNLKPSKDFDESTG 196 (534)
T ss_dssp TTCCSHHHHHHHHHTCCSSSEEEEEECHHHHSSCCCHHHHTTSSSCEEEEETTSSEEEECHHHHHHHCCCCCTTEETTTT
T ss_pred CCCCCHHHHHHHHHHHHhhCEEEcccCHHHhcCCCCHHHHhhCCCeEEEEecCCcHhHHhHHHHHHcCCCCCCCCCCCCc
Confidence 0 00
Q ss_pred -----------------C-ChhhH----HHHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceeccccC
Q 014320 122 -----------------E-TIDDF----FSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITK 179 (427)
Q Consensus 122 -----------------~-~~e~~----~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (427)
. +.+.. ..+.+.+++.|||++.|+... ....+.++...+.+ +..+.+......
T Consensus 197 ~l~e~A~~~v~~~~p~~~l~~~~~~~~l~~a~~~~~~~GiTsv~d~~~~--~~~~~~~~~l~~~g-~l~~rv~~~~~~-- 271 (534)
T 3icj_A 197 IVRERALEESRKIINEKILTVKDYKHYIESAQEHLLSLGVHSVGFMSVG--EKALKALFELEREG-RLKMNVFAYLSP-- 271 (534)
T ss_dssp EEEHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEEC--HHHHHHHHHHHHTT-CCCSEEEEEECG--
T ss_pred eeeHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhCCCEEEEeCCCC--HHHHHHHHHHHhCC-CCcEEEEEecCH--
Confidence 0 11111 223455688999999998532 12233333333332 233333222111
Q ss_pred CChhhHHHHHHHHH------HcCCCeEEEEEec-------------------CCCccCCHHHHHHHHHHHHHcCCcEEEe
Q 014320 180 WDEVVSDEMEVMVK------EKGINSFKFFMAY-------------------KGSFMINDELLIEGFKRCKSLGALAMVH 234 (427)
Q Consensus 180 ~~~~~~~~~~~l~~------~~g~~~ik~~~~~-------------------~~~~~~~~~~l~~~~~~a~~~g~~v~~H 234 (427)
+..+++.+... +..+.++|+|.+. .+.+.+++++++++++.|+++|+++++|
T Consensus 272 ---~~~~~~~~~~~~~~~~~~~~~~gvK~~~DG~~~~~tA~l~~pY~d~~~~~g~~~~~~e~l~~~v~~A~~~G~~v~~H 348 (534)
T 3icj_A 272 ---ELLDKLEELNLGKFEGRRLRIWGVKLFVDGSLGARTALLSEPYTDNPTTSGELVMNKDEIVEVIERAKPLGLDVAVH 348 (534)
T ss_dssp ---GGHHHHHHHTCCSEECSSEEEEEEEEESCCCTTTTCSCCSSCBTTBTTCCCCCSSCHHHHHHHHHHHTTTTCEEEEE
T ss_pred ---HHHHHHHHhccccCCCCcEEEEeEEEEEeCCCCccchhhcCCccCCCCCCCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 22333333210 0124568888762 2334578999999999999999999999
Q ss_pred cCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEec
Q 014320 235 AENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEP 314 (427)
Q Consensus 235 ~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~ 314 (427)
+.++..++..++.++ +.+.|..+.|+...+. +.++++++.|+.+. +
T Consensus 349 a~gd~ai~~~l~a~~-------------------------------~~~~r~~ieH~~~~~~-e~i~~la~~gv~~~--~ 394 (534)
T 3icj_A 349 AIGDKAVDVALDAFE-------------------------------EAEFSGRIEHASLVRD-DQLERIKELKVRIS--A 394 (534)
T ss_dssp ECSHHHHHHHHHHHH-------------------------------HHTCCCEEEECCBCCH-HHHHHHHHHTCEEE--E
T ss_pred EcChHHHHHHHHHHH-------------------------------hccCCCEEEECCCCCH-HHHHHHHHcCCeEE--E
Confidence 988766654432222 1125678999987764 77889999997655 4
Q ss_pred CccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhh
Q 014320 315 VVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIE 394 (427)
Q Consensus 315 ~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e 394 (427)
||.+...+. .+. ..++. .+....+| ++++++. +.+++|||. |..+... +. .
T Consensus 395 ~P~~~~~~~-~~~-~~lg~-~r~~~~~p---------~~~l~~~-v~valGSD~-p~~~~~p------~~---------~ 445 (534)
T 3icj_A 395 QPHFIVSDW-WIV-NRVGE-ERAKWAYR---------LKTLSSI-TKLGFSTDS-PIEPADP------WV---------S 445 (534)
T ss_dssp CTTHHHHCT-THH-HHHHH-HHGGGBTC---------HHHHHHH-SCEEECCTT-TTSCCCH------HH---------H
T ss_pred ccccccchh-HHH-HhhCH-HHHhccHH---------HHHHHHh-CCEEeecCC-CCCCCCH------HH---------H
Confidence 787654322 110 00000 01112234 4558888 999999997 4432111 00 0
Q ss_pred HhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 395 ERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 395 ~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
.........+....++|++++++++|.|+|+.
T Consensus 446 ~~~av~r~~~~~~~~ls~~eaL~~~T~~~A~~ 477 (534)
T 3icj_A 446 IDAAVNRYVVDPGERVSREEALHLYTHGSAQV 477 (534)
T ss_dssp HHHHHHCCSSCGGGCCCHHHHHHHTTHHHHHH
T ss_pred HHHHHhccccCcccCCCHHHHHHHHHHHHHHH
Confidence 00000000011246799999999999999974
|
| >4ac7_C Urease subunit alpha; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 4ubp_C* 1ie7_C* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.9e-24 Score=213.50 Aligned_cols=169 Identities=18% Similarity=0.214 Sum_probs=132.2
Q ss_pred CccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCC------------CCCceEEeCCCCEEeccccccccccccCcC
Q 014320 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~------------~~~~~viD~~g~~v~PG~ID~H~H~~~~~~ 119 (427)
..|++|+|++|+++.+...++|+|+||||++|++.... .++.++||++|++|+|||||+|+|+..+
T Consensus 66 ~~dllI~n~~vvd~~g~~~~dI~I~dG~I~~Ig~~~~~~~~~~v~~~~~~~~~~~vIDa~G~~v~PG~ID~HvH~~~P-- 143 (570)
T 4ac7_C 66 VLDLLLTNALILDYTGIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKIVTAGGIDTHVHFINP-- 143 (570)
T ss_dssp BCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECCBCTTTCSSCCTTCBCCTTCEEEECTTCEEEECEEEEEEECCCT--
T ss_pred CCCEEEECeEEECCCCcEEEEEEEECCEEEEeecCCCccccccccccccCCCCceEEeCCCCEEeeCEEecccccCCc--
Confidence 56899999999998777789999999999999985321 2457899999999999999999999776
Q ss_pred CCCChhhHHHHHHHHHcCCceEEecCcC-------CCCC-cHHHHHHHHHHHhccccceeceeccccCCChhhHHHHHHH
Q 014320 120 GSETIDDFFSGQAAALAGGTTMHIDFVI-------PING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM 191 (427)
Q Consensus 120 g~~~~e~~~~~~~~~l~~GvTtv~d~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 191 (427)
+. .++++++||||+++.+. ..+. .....++.+.+......+++++++.... ..++++.++
T Consensus 144 g~---------~~aAl~gGvTTvv~gg~~p~~~~n~~p~~~~~~~l~~~l~aa~~~~v~~~~~g~~~~---~~l~el~el 211 (570)
T 4ac7_C 144 DQ---------VDVALANGITTLFGGGTGPAEGSKATTVTPGPWNIEKMLKSTEGLPINVGILGKGHG---SSIAPIMEQ 211 (570)
T ss_dssp TH---------HHHHHHTTEEEEEEECSSSCHHHHHSSCCCHHHHHHHHHHHHTTCSSEEEEEEECCC---SSHHHHHHH
T ss_pred ch---------HHHHHhcCCeEEEecCcCcccccCCcCcCCcHHHHHHHHHHhhhCCeeEEEEeccCC---cCHHHHHHH
Confidence 31 36789999999996321 1111 2344566666666667888888764332 236677887
Q ss_pred HHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChh
Q 014320 192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGD 239 (427)
Q Consensus 192 ~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~ 239 (427)
. +.|+.++|.+.++. .+++.++++++.|+++|+++.+|+++..
T Consensus 212 ~-~aGa~gfK~~~~~~----~~~~~L~~aL~~A~~~g~~V~iHae~l~ 254 (570)
T 4ac7_C 212 I-DAGAAGLKIHEDWG----ATPASIDRSLTVADEADVQVAIHSDTLN 254 (570)
T ss_dssp H-HHTCCEEEEEGGGC----CCHHHHHHHHHHHHHHTCEEEEECCTTC
T ss_pred H-HcCCCeEeeccCCC----CCHHHHHHHHHHHHHcCCEEEEEcCCcc
Confidence 7 78999999997653 5899999999999999999999998653
|
| >4ubp_C Protein (urease (chain C)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.92.1.1 c.1.9.2 PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 1ie7_C* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.9e-24 Score=213.50 Aligned_cols=169 Identities=18% Similarity=0.214 Sum_probs=132.2
Q ss_pred CccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCC------------CCCceEEeCCCCEEeccccccccccccCcC
Q 014320 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~------------~~~~~viD~~g~~v~PG~ID~H~H~~~~~~ 119 (427)
..|++|+|++|+++.+...++|+|+||||++|++.... .++.++||++|++|+|||||+|+|+..+
T Consensus 66 ~~dllI~n~~vvd~~g~~~~dI~I~dG~I~~Ig~~~~~~~~~~v~~~~~~~~~~~vIDa~G~~v~PG~ID~HvH~~~P-- 143 (570)
T 4ubp_C 66 VLDLLLTNALILDYTGIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKIVTAGGIDTHVHFINP-- 143 (570)
T ss_dssp BCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECCBCTTTCTTCCTTCBCCTTCEEEECTTCEEEECEEEEEEECCCT--
T ss_pred CCCEEEECeEEECCCCcEEEEEEEECCEEEEeecCCCccccccccccccCCCCceEEeCCCCEEeeCEEEcccCCCCc--
Confidence 56899999999998777789999999999999985321 2457899999999999999999999776
Q ss_pred CCCChhhHHHHHHHHHcCCceEEecCcC-------CCCC-cHHHHHHHHHHHhccccceeceeccccCCChhhHHHHHHH
Q 014320 120 GSETIDDFFSGQAAALAGGTTMHIDFVI-------PING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM 191 (427)
Q Consensus 120 g~~~~e~~~~~~~~~l~~GvTtv~d~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 191 (427)
+. .++++++||||+++.+. ..+. .....++.+.+......+++++++.... ..++++.++
T Consensus 144 g~---------~~aAl~gGvTTvv~gg~~p~~~~n~~p~~~~~~~l~~~l~aa~~~~v~~~~~g~~~~---~~l~el~el 211 (570)
T 4ubp_C 144 DQ---------VDVALANGITTLFGGGTGPAEGSKATTVTPGPWNIEKMLKSTEGLPINVGILGKGHG---SSIAPIMEQ 211 (570)
T ss_dssp TH---------HHHHHHTTEEEEEEECCSSCHHHHHSSCCCHHHHHHHHHHHHTTCSSEEEEEEECCC---SSHHHHHHH
T ss_pred ch---------HHHHHhcCCeEEEecCccccccCCCcCCCCcHHHHHHHHHHhhhCCeeEEEEeccCC---cCHHHHHHH
Confidence 31 36789999999996321 1111 2344566666666667888888764332 236677887
Q ss_pred HHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChh
Q 014320 192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGD 239 (427)
Q Consensus 192 ~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~ 239 (427)
. +.|+.++|.+.++. .+++.++++++.|+++|+++.+|+++..
T Consensus 212 ~-~aGa~gfK~~~~~~----~~~~~L~~aL~~A~~~g~~V~iHae~l~ 254 (570)
T 4ubp_C 212 I-DAGAAGLKIHEDWG----ATPASIDRSLTVADEADVQVAIHSDTLN 254 (570)
T ss_dssp H-HHTCCEEEEEGGGC----CCHHHHHHHHHHHHHHTCEEEEECCTTC
T ss_pred H-HcCCCeEeeccCCC----CCHHHHHHHHHHHHHcCCEEEEEcCCcc
Confidence 7 78999999997653 5899999999999999999999998653
|
| >3hpa_A Amidohydrolase; signature of Zn ligands, structural genomics, NYSGXRC, target 9236E, PSI-2, protein structure initiative; 2.20A {Unidentified} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.2e-22 Score=198.90 Aligned_cols=315 Identities=17% Similarity=0.252 Sum_probs=179.7
Q ss_pred CccEEEECcEEE-cCCC----ceeeeEEEeCCeEEEeeCCCCCC-CCceEEeCCCCEEeccccccccccccCcC-CC---
Q 014320 52 SSKILIKGGTVV-NAHH----QQIADVYVEDGIVVAVQPNINVG-DDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS--- 121 (427)
Q Consensus 52 ~~~~~i~~~~i~-~~~~----~~~~~i~i~~g~I~~vg~~~~~~-~~~~viD~~g~~v~PG~ID~H~H~~~~~~-g~--- 121 (427)
+.+++|+|++|+ +.++ +++++|+|+||||++||+..+.+ .+.++||++|++|+|||||+|+|+.++.. +.
T Consensus 28 p~~llI~na~vi~T~D~~~~vi~~gdV~I~dgrI~aVG~~~~~~~~~~~vIDa~G~~v~PG~ID~H~H~~~~~~~g~~~~ 107 (479)
T 3hpa_A 28 PKTLLVKHADVLVTMDDTRRELRDAGLYIEDNRIVAVGPSAELPETADEVLDLRGHLVIPGLVNTHHHMYQSLTRAVPAA 107 (479)
T ss_dssp -CEEEEEEEEEEECCCTTCCEEEEEEEEEETTEEEEEEEGGGSCSCCSEEEECTTEEEEECEEECCCCGGGGGSCSCTTT
T ss_pred CCCEEEECCEEEEeeCCCCCEEcCcEEEEECCEEEEEeCCccCCCCCCeEEECCCCEEeeCceeHhhCcchhcccccccC
Confidence 568999999976 4432 46899999999999999876544 45689999999999999999999865421 00
Q ss_pred ------------------CChhhH----HHHHHHHHcCCceEEecCcCCCCC--cHHHHHHHHHHHhccccceeceec--
Q 014320 122 ------------------ETIDDF----FSGQAAALAGGTTMHIDFVIPING--SLTAGFEAYEKKAKNSCMDYGFHM-- 175 (427)
Q Consensus 122 ------------------~~~e~~----~~~~~~~l~~GvTtv~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-- 175 (427)
...+.. ......++..|+|++.++...... ......+.....+.+.........
T Consensus 108 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 187 (479)
T 3hpa_A 108 QNAELFGWLTNLYKIWAHLTPEMIEVSTLTAMAELLQSGCTTSSDHLYIYPNGSRLDDSIGAAQRIGMRFHASRGAMSVG 187 (479)
T ss_dssp TTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTEEEEECCBCCCCTTCCHHHHHHHHHHHTCEEEEEEEECC--
T ss_pred CCcchHHHHhhhhhhhhhcCHHHHHHHHHHHHHHHHHhCCceecceeeeccchhhHHHHHHHHHHhcchhhhhhheeecc
Confidence 111111 123455689999999987543322 344444555554433222111100
Q ss_pred ----c-----ccCCChhhHHHHHHHHHH---cC-CCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-CChhhH
Q 014320 176 ----A-----ITKWDEVVSDEMEVMVKE---KG-INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAV 241 (427)
Q Consensus 176 ----~-----~~~~~~~~~~~~~~l~~~---~g-~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e~~~~~ 241 (427)
. .........+...++... .+ .........++.....+.+.+.++...|++.|..+++|. +...++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~h~~~~~~~~ 267 (479)
T 3hpa_A 188 QRDGGLPPDSVVEREPDILRDTQRLIETYHDEGRYAMLRVVVAPCSPFSVSRDLMRDAAVLAREYGVSLHTHLAENVNDI 267 (479)
T ss_dssp --------------CHHHHHHHHHHHHHHCCCSTTCSEEEEEEESCTTTSCHHHHHHHHHHHHHHTCEEEEEESCSHHHH
T ss_pred ccccCCCchhhhhhhhhHHHHHHHHHHHhhhhcccccceeEecccccccCCHHHHHHHHHHHHhcCCeEEeecccchHHH
Confidence 0 001111222223333221 12 123445556666777899999999999999999999996 444333
Q ss_pred HHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceee
Q 014320 242 FEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVL 321 (427)
Q Consensus 242 ~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~ 321 (427)
.... ...|.. .+ .........+.+..+.|+..... ..++..++.+..+. .+|.....
T Consensus 268 ~~~~---~~~g~~----------------~~-~~~~~~~~~~~~~~~~h~~~~~~-~~~~~~~~~~~~~~--~~p~~~~~ 324 (479)
T 3hpa_A 268 AYSR---EKFGMT----------------PA-EYAEDLGWVGHDVWHAHCVQLDD-AGIGLFARTGTGVA--HCPCSNMR 324 (479)
T ss_dssp HC----------C----------------HH-HHHHHTTCCSTTEEEEECTTCCH-HHHHHHHHHTCEEE--ECHHHHHH
T ss_pred HHHH---HHcCCc----------------hH-HHHhhhccccccceeeeeEecch-hHHHHHHhcCCcee--eccccccc
Confidence 2111 111110 00 01111122345677888766443 33445555554444 35542221
Q ss_pred CcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHH
Q 014320 322 DDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVW 401 (427)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~ 401 (427)
... . .+| ....+..|+.+.+|||..+.+... ....+.+...++
T Consensus 325 ~~~-----------~---~~~---------~~~~~~~~~~v~~gtD~~~~~~~~--------------~~~~~~~~~~~~ 367 (479)
T 3hpa_A 325 LAS-----------G---IAP---------VKKMRLAGVPVGLGVDGSASNDGA--------------QMVAEVRQALLL 367 (479)
T ss_dssp TTC-----------C---CCC---------HHHHHHHTCCEEECCCCTTSSCCC--------------CHHHHHHHHHHH
T ss_pred ccc-----------C---ccc---------hhHHHhcCCcEEeeccccccCCCc--------------cHHHHHHHHHHH
Confidence 111 0 122 344677899999999976543211 122333333332
Q ss_pred H-HHHhcCCCCHHHHHHHHchhhhcC
Q 014320 402 D-TMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 402 ~-~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
. .....+++|++++++++|.|||++
T Consensus 368 ~~~~~~~~~ls~~eal~~~T~~~A~~ 393 (479)
T 3hpa_A 368 QRVGFGPDAMTAREALEIATLGGAKV 393 (479)
T ss_dssp HHHHHCTTSCCHHHHHHHTTHHHHHH
T ss_pred HhhhccccCCCHHHHHHHHHHHHHHH
Confidence 1 233456899999999999999984
|
| >4ep8_C Urease subunit alpha; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1ef2_A* 4epb_C* 4epd_C* 4epe_C* 1ejx_C* 1ejw_C* 1fwj_C* 1kra_C 2kau_C* 1a5k_C 1ejv_C* 1ejt_C* 1eju_C* 1ejs_C* 1a5m_C 1a5n_C 1ejr_C* 1a5l_C 1a5o_C 1fwa_C* ... | Back alignment and structure |
|---|
Probab=99.89 E-value=3.7e-26 Score=234.03 Aligned_cols=332 Identities=13% Similarity=0.079 Sum_probs=181.9
Q ss_pred CccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCC----------CCCCCceEEeCCCCEEeccccccccccccCcCCC
Q 014320 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNI----------NVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS 121 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~----------~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~ 121 (427)
..|++|+|++|+|+.++.+++|+|+||||++||+.. ..++++++||++|++|+|||||+|+|+.++ +.
T Consensus 64 ~~DlvI~Na~Ivd~~Gi~kaDIlIkDGrIaaIG~ag~pd~~d~vdl~~~~g~eVIDA~GkiV~PG~ID~HvH~~~~--~~ 141 (566)
T 4ep8_C 64 CVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAGGIDTHIHWICP--QQ 141 (566)
T ss_dssp SCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECEECTTTCSSCCEECCTTCEEEECTTCEEEECEEEEEEECSCT--TH
T ss_pred CCCEEEECcEEECCCCeEEeEEEEECCEEEEeecCCCcccccccccccCCCCEEEECCCCEEEcCEEEecccccCC--Cc
Confidence 579999999999998888999999999999999732 234578999999999999999999999876 21
Q ss_pred CChhhHHHHHHHHHcCCceEEecCcC-------C-CCCcHHHHHHHHHHHhccccceeceeccccCCChhhHHHHHHHHH
Q 014320 122 ETIDDFFSGQAAALAGGTTMHIDFVI-------P-INGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVK 193 (427)
Q Consensus 122 ~~~e~~~~~~~~~l~~GvTtv~d~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (427)
. ..+...+.++...... . ....................++++++........ .....+.
T Consensus 142 ~---------~~a~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~- 208 (566)
T 4ep8_C 142 A---------EEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRMLQAADSLPVNIGLLGKGNVSQP---DALREQV- 208 (566)
T ss_dssp H---------HHHHHHTEEEEEEECSSSSHHHHHCCCCCHHHHHHHHHHHHTTSSSEEEEEEECCCSCH---HHHHHHH-
T ss_pred c---------chhhhhhHHHHhhCceEEEEecCCCCCchHHHHHHHHHHhccccceeeeeecccccccc---hhhHHHh-
Confidence 1 1112223333322110 1 1113344444555555567777777655443332 2333333
Q ss_pred HcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHH
Q 014320 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATT 273 (427)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~ 273 (427)
..++..++.+..+. .....+......+...+....+|.+.........+.....+-.....+....+...+...+.
T Consensus 209 ~a~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (566)
T 4ep8_C 209 AAGVIGLKIHEDWG----ATPAAIDCALTVADEMDIQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDII 284 (566)
T ss_dssp HHTCSEEEEEGGGC----CCHHHHHHHHHHHHHHTCEEEEECCTTCSSCCHHHHHHHHTTCCEEETTTTSTTSSSTTTGG
T ss_pred hhcccccccccccc----ccchhhhhHhHHHHHhcchhhhhhhhHHHHHHHHhhHhhccCccccccccccchhHHHHHHH
Confidence 56777888776543 45667777888888899999999865544332222222222222222222222221112222
Q ss_pred HHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHH
Q 014320 274 RAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQ 353 (427)
Q Consensus 274 ~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~ 353 (427)
+....+.....+.+..|.......+..... ..++||+.++..... ...+..++ .......+
T Consensus 285 ~~~~~a~~~~~~~~~~~~~~~~~~~e~~~~---------~~~~h~l~~~~~~~~-------~~~~~~~~---~~~~~~~~ 345 (566)
T 4ep8_C 285 TACAHPNILPSSTNPTLPYTLNTIDEHLDM---------LMVCHHLDPDIAEDV-------AFAESRIR---RETIAAED 345 (566)
T ss_dssp GGGGCTTEEEEECSTTSSCBTTHHHHHHHH---------HHHHHTCCTTCHHHH-------HHHHHHCC---HHHHHHHH
T ss_pred HHHHHHhhcCCceeehhHHHHHHhhcccce---------EEEeecccCChhhHH-------hhccCCCc---ccchHHHH
Confidence 222211111111222222222221111111 124566655433221 01111111 22334455
Q ss_pred HHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 354 AALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 354 ~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
..+..|.++.+++||.++....+.. ..+..+.......+..++...+..++++++++++++|.||||+
T Consensus 346 ~l~~~G~~~~i~sD~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~gls~~eal~~aTiNPAra 413 (566)
T 4ep8_C 346 VLHDLGAFSLTSSDSQAMGRVGEVI-----LRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALT 413 (566)
T ss_dssp HHHHHTSSCEECCCTTSSSCTTCHH-----HHHHHHHHHHHHHHCSCTTCCSSSCHHHHHHHHGGGTHHHHHH
T ss_pred HHHhCCCcceEeecccccccccccc-----cccCCCCchHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHH
Confidence 6677899999999999987654421 1111111112222222221223456799999999999999985
|
| >3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, H PSI-2; 2.06A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-22 Score=199.51 Aligned_cols=294 Identities=21% Similarity=0.146 Sum_probs=167.5
Q ss_pred CccEEEECcEEEcCCC-ceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCC---------
Q 014320 52 SSKILIKGGTVVNAHH-QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS--------- 121 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~-~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~--------- 121 (427)
+.+++|+|++|+++++ ...++|+|+||||++|++..+ +++.++||++|++|+|||||+|+|+.....+.
T Consensus 4 ~~~~~i~~~~i~~~~~~~~~~~v~i~~g~I~~i~~~~~-~~~~~~id~~g~~~~Pg~~d~h~h~~~~~~~~~~~~~~~~~ 82 (396)
T 3ooq_A 4 SVKILFKNATVFPITSRPFKGDVLVSNGKVEKVGENIE-DPDAEIVDLTGKFLFPGFVDAHSHIGLFEEGVGYYYSDGNE 82 (396)
T ss_dssp --CEEEEEEEECCSSSCCEEEEEEEETTEEEEEESCCC-CTTSEEEECTTCEEEECEEEEEECTTTSCTTSCGGGCCSCC
T ss_pred cceEEEECcEEEeCCCCeEEeEEEEECCEEEEecCCCC-CCCCeEEECCCCEEecCEEecccccCccccCcccccccccc
Confidence 3568999999999875 334899999999999998765 56789999999999999999999998642211
Q ss_pred --------CChhhHH----HHHHHHHcCCceEEecCcCCCCCc---------HHHHHHHHHHHhccccce--eceec---
Q 014320 122 --------ETIDDFF----SGQAAALAGGTTMHIDFVIPINGS---------LTAGFEAYEKKAKNSCMD--YGFHM--- 175 (427)
Q Consensus 122 --------~~~e~~~----~~~~~~l~~GvTtv~d~~~~~~~~---------~~~~~~~~~~~~~~~~~~--~~~~~--- 175 (427)
...++.+ .....++++|||++.++....+.. .....+..... ....+. ++.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~gs~~~i~G~~~~~~~~~~~~~~~~~~-~~~~i~~~~g~~~~~~ 161 (396)
T 3ooq_A 83 ATDPVTPHVKALDGFNPQDPAIERALAGGVTSVMIVPGSANPVGGQGSVIKFRSIIVEECIVK-DPAGLKMAFGENPKRV 161 (396)
T ss_dssp TTCSBCTTCBGGGGCCTTCHHHHHHHTTTEEEEEECCCSSSSEEEEEEEEESCCSSHHHHEEE-EEEEEEEECSHHHHHH
T ss_pred ccCccCccccHhhhcCcCcHHHHHHHhCCeEEEeccCCCCCcccCeeEEEeccCCCHHHceec-CCcEEEEEcCCCCccc
Confidence 1111111 356788999999999985332110 00000100000 001111 11000
Q ss_pred --cc---cCCChhhHHHHHHHHH---Hc--CCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHH
Q 014320 176 --AI---TKWDEVVSDEMEVMVK---EK--GINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQ 245 (427)
Q Consensus 176 --~~---~~~~~~~~~~~~~l~~---~~--g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~ 245 (427)
.. ........+.+++... +. +.... ....+.. ...+...+.+..+.+.++++.+|+...+.+
T Consensus 162 ~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~g~~-~~~~~~~e~l~~~~~~~~~v~iHa~~~~~i---- 233 (396)
T 3ooq_A 162 YGERKQTPSTRMGTAGVIRDYFTKVKNYMKKKELA---QKEGKEF-TETDLKMEVGEMVLRKKIPARMHAHRADDI---- 233 (396)
T ss_dssp HHHTTCSCSSHHHHHHHHHHHHHHHHHHHHHHHHH---HHTTCCC-CCCCHHHHHHHHHHTTSSCEEEEECSHHHH----
T ss_pred ccccCCCCccHHHHHHHHHHHHHHHHHHHHhhhhh---hhccCCC-CCcChhHHHHHHHHcCCCcEEEEECchhHH----
Confidence 00 0000011122222221 00 00000 0000111 111223334444457899999999765433
Q ss_pred HHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCccc
Q 014320 246 KRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSW 325 (427)
Q Consensus 246 ~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~ 325 (427)
.+.++.+++.|.++.+.|+..... .++++++.|+.+.. ||.+.+.....
T Consensus 234 ---------------------------~~~~~~~~~~g~~~~i~H~~~~~~--~~~~l~~~gv~v~~--~P~~~~~~~~~ 282 (396)
T 3ooq_A 234 ---------------------------LTAIRIAEEFGFNLVIEHGTEAYK--ISKVLAEKKIPVVV--GPLLTFRTKLE 282 (396)
T ss_dssp ---------------------------HHHHHHHHHHTCCEEEEECTTGGG--GHHHHHHHTCCEEE--CCCSSCCCSGG
T ss_pred ---------------------------HHHHHHHHHcCCCEEEecCchHHH--HHHHHHHCCCCEEE--Ccccccccchh
Confidence 234455556678889999987653 47888899988875 66543221111
Q ss_pred ccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHH
Q 014320 326 LWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV 405 (427)
Q Consensus 326 ~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~ 405 (427)
.. ......+..+++.|+.++++||+ |..+.. .+...+ ...
T Consensus 283 ~~------------------~~~~~~~~~l~~~Gv~v~lgtD~-~~~~~~--------------------~l~~~~-~~~ 322 (396)
T 3ooq_A 283 LK------------------DLTMETIAKLLKDGVLIALMCDH-PVIPLE--------------------FATVQA-ATA 322 (396)
T ss_dssp GT------------------TCCTTHHHHHHHTTCCEEECCTT-TTSCGG--------------------GHHHHH-HHG
T ss_pred HH------------------hhhhHHHHHHHHCCCEEEEEcCC-CccCcc--------------------HHHHHH-HHH
Confidence 10 00112467788999999999997 433211 111222 223
Q ss_pred hcCCCCHHHHHHHHchhhhcC
Q 014320 406 ESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 406 ~~~~l~l~~~v~~~t~npA~~ 426 (427)
.+.+++++++++++|.|||++
T Consensus 323 ~~~gl~~~~al~~~T~n~A~~ 343 (396)
T 3ooq_A 323 MRYGAKEEDLLKILTVNPAKI 343 (396)
T ss_dssp GGGTCCHHHHHHTTTHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHH
Confidence 456799999999999999974
|
| >1yrr_A N-acetylglucosamine-6-phosphate deacetylase; (beta/alpha)8 barrel, beta sandwich, hydrolase; 2.00A {Escherichia coli} SCOP: b.92.1.5 c.1.9.10 PDB: 1ymy_A 2p50_A 2p53_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-21 Score=188.40 Aligned_cols=187 Identities=14% Similarity=0.167 Sum_probs=118.6
Q ss_pred EEEECcEEEcCCC-ceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcC-C----CCChhhHH
Q 014320 55 ILIKGGTVVNAHH-QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G----SETIDDFF 128 (427)
Q Consensus 55 ~~i~~~~i~~~~~-~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~-g----~~~~e~~~ 128 (427)
++|+|++|++++. ..+++|+|+||||++|++..+.+.+.++||++|++|+|||||+|+|+..... . ..+++.++
T Consensus 2 ~li~~~~v~~~~~~~~~~~v~I~~g~I~~vg~~~~~~~~~~viD~~g~~v~PGlID~H~H~~~g~~~~~~~~~~~~~~~~ 81 (382)
T 1yrr_A 2 YALTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELPPEIEQRSLNGAILSPGFIDVQLNGCGGVQFNDTAEAVSVETLE 81 (382)
T ss_dssp EEEESSEEECSSCEESSEEEEEETTEEEEEEEGGGSCTTCCEEECTTCEEEECEEEEEESEETTEESSSSTTTSSHHHHH
T ss_pred EEEEeeEEEcCCceeeCCEEEEECCEEEEEecCCCCCccceeecCCCCEEccCEEEEeecccCCcCccccccCCCHHHHH
Confidence 5899999999876 3578999999999999976443445689999999999999999999754210 1 12566777
Q ss_pred HHHHHHHcCCceEEecCcCCCCC-cHHHHHHHHHHH----hccccceeceeccc--cC-----CC----hhhHHHHHHHH
Q 014320 129 SGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKK----AKNSCMDYGFHMAI--TK-----WD----EVVSDEMEVMV 192 (427)
Q Consensus 129 ~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~-----~~----~~~~~~~~~l~ 192 (427)
..++.++++||||++|+....+. ...+.+...++. +.+ .+.+...++. .. .. ....+.++ +.
T Consensus 82 ~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~g~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~-~~ 159 (382)
T 1yrr_A 82 IMQKANEKSGCTNYLPTLITTSDELMKQGVRVMREYLAKHPNQ-ALGLHLEGPWLNLVKKGTHNPNFVRKPDAALVD-FL 159 (382)
T ss_dssp HHHHHHHHTTEEEEEEEEECCCHHHHHHHHHHHHHHHHHCTTS-BCCEEEECSSCCCSCC-CCCSCSCCHHHHHHHH-HH
T ss_pred HHHHHHHhCCeEEEEeecCCCCHHHHHHHHHHHHHHhhccCCc-eeEEEEeCCcCCccccCCCCHHHccCCCHHHHH-HH
Confidence 77889999999999997543221 122223333322 222 1111111111 00 00 11123344 55
Q ss_pred HHcCCCeEEEEE-ecCCCccCCHHHHHHHHHHHHHcCCcEEE-ecC-ChhhHHHHHHHHHHcCCCC
Q 014320 193 KEKGINSFKFFM-AYKGSFMINDELLIEGFKRCKSLGALAMV-HAE-NGDAVFEGQKRMIELGITG 255 (427)
Q Consensus 193 ~~~g~~~ik~~~-~~~~~~~~~~~~l~~~~~~a~~~g~~v~~-H~e-~~~~~~~~~~~l~~~G~~~ 255 (427)
..+.+.+|.+. .+ .+.+.++++.|+++|+++++ |+. +.+++... .+.|...
T Consensus 160 -~~~~~~ik~~~~~~-------~~~~~~~~~~a~~~g~~v~~gH~~~~~~~~~~~----~~~G~~~ 213 (382)
T 1yrr_A 160 -CENADVITKVTLAP-------EMVPAEVISKLANAGIVVSAGHSNATLKEAKAG----FRAGITF 213 (382)
T ss_dssp -HHTTTTEEEEEECG-------GGSCHHHHHHHHHTTCEEEECSCCCCHHHHHHH----HHHTCCE
T ss_pred -HhcCCCEEEEEECC-------CCChHHHHHHHHHCCCEEEEECCCCCHHHHHHH----HHcCCCe
Confidence 46778888753 21 14455789999999999998 985 66555433 3356543
|
| >3iv8_A N-acetylglucosamine-6-phosphate deacetylase; IDP01334, fruct phosphate, carbohydrate metabolism, hydrolase; HET: F6P; 2.53A {Vibrio cholerae} PDB: 3egj_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-19 Score=173.47 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=84.8
Q ss_pred EEEECcEEEcCCCc-eeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccC--cCCCCChhhHHHHH
Q 014320 55 ILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAME--FMGSETIDDFFSGQ 131 (427)
Q Consensus 55 ~~i~~~~i~~~~~~-~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~--~~g~~~~e~~~~~~ 131 (427)
++|+|++|++++.. .+++|+|+||||++|++..+.+.+.++||++|++|+|||||+|+|.... +....+++++.+.+
T Consensus 5 ~~i~n~~i~~~~~~~~~~~i~I~dG~I~~i~~~~~~~~~~~viD~~G~~v~PGfID~HvHg~~G~~~~d~~~~e~l~~~~ 84 (381)
T 3iv8_A 5 YALTNCKIYTGNDVLVKHAVIINGDKIEAVCPIESLPSEMNVVDLNGANLSPGFIDLQLNGCGGVMFNDEITAETIDTMH 84 (381)
T ss_dssp EEEEEEEEECSSCEESSEEEEEETTEEEEEEEGGGSCTTCEEEEEEEEEEEECEEEEEECEETTEETTTSCSHHHHHHHH
T ss_pred EEEEccEEEcCCCeEeccEEEEECCEEEEEeCCCCCCCCCeEEECCCCEEccCeEeeeecccCCCCCCCCCCHHHHHHHH
Confidence 68999999998874 4679999999999999865545567899999999999999999997543 11224678899999
Q ss_pred HHHHcCCceEEecCcCCCCC-cHHHHHHHHHHH
Q 014320 132 AAALAGGTTMHIDFVIPING-SLTAGFEAYEKK 163 (427)
Q Consensus 132 ~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~ 163 (427)
+.++++|||+++++..+.+. ...+.++.+++.
T Consensus 85 ~a~~~~GvTt~l~t~~T~~~e~l~~al~~~~~~ 117 (381)
T 3iv8_A 85 KANLKSGCTSFLPTLITSSDENMRQAIAAAREY 117 (381)
T ss_dssp HHHHHTTEEEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCccccccccCCCCHHHHHHHHHHHHHH
Confidence 99999999999987654333 344555544443
|
| >3mtw_A L-arginine carboxypeptidase CC2672; hydrolase; HET: KCX M3R; 1.70A {Caulobacter vibrioides} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.7e-18 Score=164.17 Aligned_cols=184 Identities=15% Similarity=0.140 Sum_probs=108.8
Q ss_pred EEEECcEEEcCCC---ceeeeEEEeCCeEEEeeCCCC-CCCCceEEeCCCCEEeccccccccccccCcCCCC-----Chh
Q 014320 55 ILIKGGTVVNAHH---QQIADVYVEDGIVVAVQPNIN-VGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSE-----TID 125 (427)
Q Consensus 55 ~~i~~~~i~~~~~---~~~~~i~i~~g~I~~vg~~~~-~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~-----~~e 125 (427)
++|+|++|+|+.+ .++++|+|+||||++||+..+ .+++.++||++|++|+|||||+|+|+........ ..+
T Consensus 4 ~aI~narviD~~~g~~i~~~~V~I~dG~I~~Ig~~~~~~~~~~~vID~~G~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~ 83 (403)
T 3mtw_A 4 KAVSAARLLDVASGKYVDNPLVIVTDGRITSIGKKGDAVPAGATAVDLPGVTLLPGLIDMHVHLDSLAEVGGYNSLEYSD 83 (403)
T ss_dssp EEEEEEEEEETTTTEEEESEEEEEETTEEEEEEETTCCCCTTCEEEEEEEEEEEECEEEEEECTTCCTTCCGGGGGGSCH
T ss_pred EEEEceEEEECCCCcEecCcEEEEECCEEEEEeCCCCCCCCCCEEEECCCCEEEeChheeeeCCccccccCccccccccH
Confidence 6899999999764 467999999999999998754 3467899999999999999999999876521110 011
Q ss_pred hHH-----HHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhcccccee-------ceecc---------c-------
Q 014320 126 DFF-----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDY-------GFHMA---------I------- 177 (427)
Q Consensus 126 ~~~-----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~---------~------- 177 (427)
.+. ......+..|+|+..+...... ................... ..... .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (403)
T 3mtw_A 84 RFWSVVQTANAKKTLEAGFTTVRNVGAADY--DDVGLREAIDAGYVPGPRIVTAAISFGATGGHCDSTFFPPSMDQKNPF 161 (403)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEEECCCSTT--HHHHHHHHHHTTSSCCCEEEECCSCEESTTSTTSCCSSCGGGCCCCTT
T ss_pred HHHhhhhhhhhhhccccccceeeccccccc--cchhhhhhhhcccccccccccccccccccccccccccccccccccccc
Confidence 111 1223457889999988754322 1111111111111100000 00000 0
Q ss_pred cCC-ChhhHHHHHHHHHHcCCCeEEEEEec--------CCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhH
Q 014320 178 TKW-DEVVSDEMEVMVKEKGINSFKFFMAY--------KGSFMINDELLIEGFKRCKSLGALAMVHAENGDAV 241 (427)
Q Consensus 178 ~~~-~~~~~~~~~~l~~~~g~~~ik~~~~~--------~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~ 241 (427)
... ..+......... ..+....+..... ........+++.++++.+++.+.++.+|.......
T Consensus 162 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 233 (403)
T 3mtw_A 162 NSDSPDEARKAVRTLK-KYGAQVIKICATGGVFSRGNEPGQQQLTYEEMKAVVDEAHMAGIKVAAHAHGASGI 233 (403)
T ss_dssp CCCSHHHHHHHHHHHH-HTTCSEEEEECBCCSSSSSCCTTCBCSCHHHHHHHHHHHHHTTCEEEEEECSHHHH
T ss_pred ccchhHHHhhhhHhhh-hhcchhhhhhhccccccccccccccccCHHHHHHHHHHHHHcCCeEEEEeccchhH
Confidence 000 011122222222 4555555444321 22334578899999999999999999998766544
|
| >1o12_A N-acetylglucosamine-6-phosphate deacetylase; structural genomics, TM0814, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} SCOP: b.92.1.5 c.1.9.10 | Back alignment and structure |
|---|
Probab=99.77 E-value=8.3e-19 Score=170.28 Aligned_cols=69 Identities=25% Similarity=0.325 Sum_probs=56.4
Q ss_pred eeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCC
Q 014320 69 QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIP 148 (427)
Q Consensus 69 ~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~ 148 (427)
.+++|+|+||||++|++ . + || +|++|+|||||+|+|+.++.. ... .++...+++++++||||++|+...
T Consensus 28 ~~~~V~I~~g~I~~vg~-----~--~-iD-~g~~v~PGlID~H~H~~~~~~-~~~-~~l~~~~~~~l~~GvTtv~d~~~~ 96 (376)
T 1o12_A 28 FTGDVEIEEGKIVKVEK-----R--E-CI-PRGVLMPGFVDPHIHGVVGAD-TMN-CDFSEMEEFLYSQGVTTFLATTVS 96 (376)
T ss_dssp EEEEEEEETTEEEEEEE-----C--C-SC-CSSEEEECEEEEEECEETTEE-TTT-TCHHHHHHHHHTTTEEEEEEECCS
T ss_pred cCceEEEECCEEEEeCC-----C--c-cC-CCCEEccCeEEEeecCCCCCC-CCh-hhHHHHHHHHHhCCcEEEEeccCC
Confidence 68899999999999986 1 4 99 999999999999999976521 111 136677889999999999998643
|
| >3mkv_A Putative amidohydrolase; sargasso SEA, structural genomics, protein structure initiat NEW YORK structural genomix research consortium, nysgxrc; HET: KCX; 2.40A {Undefined} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.7e-17 Score=154.98 Aligned_cols=66 Identities=29% Similarity=0.514 Sum_probs=58.7
Q ss_pred CccEEEECcEEEcCCC---ceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccC
Q 014320 52 SSKILIKGGTVVNAHH---QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAME 117 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~---~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~ 117 (427)
|.+++|+|++|+|++. .++++|+|+||||++||+....+++.++||++|++|+|||||+|+|+...
T Consensus 3 M~~lli~ng~i~d~~~~~~~~~~dV~I~~G~I~~Ig~~~~~~~~~~vID~~G~~v~PGfID~H~H~~~~ 71 (426)
T 3mkv_A 3 LTTFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKSSNAHVIDVKGKTIMPGLIDLHVHVVAI 71 (426)
T ss_dssp CCEEEEEEEEECCTTSSSCEEEEEEEEETTEEEEEESSCCCCSSCEEEECTTCEEEECEEEEEECTTCC
T ss_pred cCcEEEECeEEEeCCCCcEecCcEEEEECCEEEEecCCCCCCCCCEEEECCCCEEEeChhhhhhCcccc
Confidence 5789999999999875 35789999999999999876666778999999999999999999998765
|
| >3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group., structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.1e-15 Score=112.24 Aligned_cols=66 Identities=20% Similarity=0.387 Sum_probs=56.6
Q ss_pred CccEEEECcEEEcCCC--ceeeeEEEeCCeEEEeeCCCCC---CCCceEEeCCCCEEeccccccccccccC
Q 014320 52 SSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGGIDPHTHLAME 117 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~--~~~~~i~i~~g~I~~vg~~~~~---~~~~~viD~~g~~v~PG~ID~H~H~~~~ 117 (427)
+.+++|+|++|++++. ...++|+|+||||++|++.... .++.++||++|++|+|||||+|+|+.++
T Consensus 3 ~~~~li~n~~i~~~~~~~~~~~~i~I~~g~I~~ig~~~~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~p 73 (81)
T 3ggm_A 3 VPDMILYNGKITTLDPSQPEVSAIAITDGLITAVGGDELLNSATEKTKKIDLKRKRAIPGLNDSHIHVIRG 73 (81)
T ss_dssp CCSEEEESSEEECSCTTCSEESEEEEETTEEEEEESGGGGGGCCTTCEEEECTTCEEEECCCCTTEEEECC
T ss_pred cCCEEEECCEEEeCCCCCccccEEEEECCEEEEEeCchHhcccCCCCEEEECCCCEEeeCeEeeeeCCCCc
Confidence 4678999999999765 3578999999999999986432 2456899999999999999999999988
|
| >1bf6_A Phosphotriesterase homology protein; hypothetical protein; 1.70A {Escherichia coli} SCOP: c.1.9.3 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-12 Score=120.50 Aligned_cols=255 Identities=14% Similarity=0.089 Sum_probs=136.4
Q ss_pred cccccccccccCcC--------CCCChhhHHHHHHHHHcCCceEEecCcCCCC-CcHHHHHHHHHHHhccccceece---
Q 014320 106 GGIDPHTHLAMEFM--------GSETIDDFFSGQAAALAGGTTMHIDFVIPIN-GSLTAGFEAYEKKAKNSCMDYGF--- 173 (427)
Q Consensus 106 G~ID~H~H~~~~~~--------g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--- 173 (427)
|+||+|+|+..... .....+......+.+.+.|||+++++..... .......+..++.+.+.+...++
T Consensus 6 G~iD~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~iv~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~~~~ 85 (291)
T 1bf6_A 6 GYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYYQD 85 (291)
T ss_dssp SEEEEEECSSEECHHHHTCGGGEECCHHHHHHHHHHHHHTTEEEEEECCCGGGTCCHHHHHHHHHHHCCEEEEEECCCCG
T ss_pred ceeeeccCeecCCcccccCCCcccCCHHHHHHHHHHHHHcCCCEEEecCCCcCCCCHHHHHHHHHhcCCeEEEeeccccC
Confidence 99999999974310 0112233444566778999999998864311 12332222222222222222233
Q ss_pred --eccc-cCCChhhH-HHHHHHHHHcCC-------CeEE-EEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhH
Q 014320 174 --HMAI-TKWDEVVS-DEMEVMVKEKGI-------NSFK-FFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAV 241 (427)
Q Consensus 174 --~~~~-~~~~~~~~-~~~~~l~~~~g~-------~~ik-~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~ 241 (427)
+... .....+.+ +.+.+.+ ..|+ ..++ +.+++........+.+++.++.|+++|++|.+|+++....
T Consensus 86 ~~hP~~~~~~~~~~l~~~~~~~l-~~gi~~~~~~~~~iGe~gld~~~~~~~~~~~~~~~~~~a~~~~~pv~iH~~~~~~~ 164 (291)
T 1bf6_A 86 AFFPEHVATRSVQELAQEMVDEI-EQGIDGTELKAGIIAEIGTSEGKITPLEEKVFIAAALAHNQTGRPISTHTSFSTMG 164 (291)
T ss_dssp GGCCTHHHHSCHHHHHHHHHHHH-HTCSTTSSCCEEEEEEEECBTTBCCHHHHHHHHHHHHHHHHHCCCEEEECGGGCSH
T ss_pred ccCcHhhhcCCHHHHHHHHHHHH-HhccCCcCcceeeEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCeEEEeCCCCCCh
Confidence 1100 01112222 2333333 2332 1332 2233221111123568889999999999999998642111
Q ss_pred HHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcC---CCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccc
Q 014320 242 FEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN---TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSG 318 (427)
Q Consensus 242 ~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g---~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~ 318 (427)
. +.+++.++.+ .++.+.|+......+.++++.+.|..+..+.+..
T Consensus 165 ~-------------------------------~~~~~l~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~G~~i~~~~~~~- 212 (291)
T 1bf6_A 165 L-------------------------------EQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIGK- 212 (291)
T ss_dssp H-------------------------------HHHHHHHHTTCCGGGEEECCCCSSCCHHHHHHHHHTTCEEEECCTTC-
T ss_pred H-------------------------------HHHHHHHHcCCCchhEEEECCCCCCCHHHHHHHHHCCCEEEEccCcc-
Confidence 1 1123333333 3678999954333577788888898777643310
Q ss_pred eeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcC--CceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHh
Q 014320 319 LVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATG--ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEER 396 (427)
Q Consensus 319 l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G--~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~ 396 (427)
. . .+| ...+.+.++++++.| ..+.++||. |+.... ....| .+....
T Consensus 213 -------~---------~---~~~--~~~~~~~~~~~~~~~~~dril~~TD~-p~~~~~---------~~~~~-~~~~~~ 260 (291)
T 1bf6_A 213 -------N---------S---YYP--DEKRIAMLHALRDRGLLNRVMLSMDI-TRRSHL---------KANGG-YGYDYL 260 (291)
T ss_dssp -------T---------T---TSC--HHHHHHHHHHHHHTTCGGGEEECCCC-CSGGGS---------GGGTS-CCTTHH
T ss_pred -------c---------C---CCC--HHHHHHHHHHHHHhCCCCeEEEcCCC-CCCccc---------hhcCC-CCHHHH
Confidence 0 0 022 123456788999988 456899996 552111 11123 333433
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 397 MHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 397 l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
++..+..+ ...+++.+++.++++.||+|+
T Consensus 261 ~~~~~~~l-~~~g~~~~~~~~~~~~N~~rl 289 (291)
T 1bf6_A 261 LTTFIPQL-RQSGFSQADVDVMLRENPSQF 289 (291)
T ss_dssp HHTHHHHH-HHTTCCHHHHHHHHTHHHHHH
T ss_pred HHHHHHHH-HHcCCCHHHHHHHHHHhHHHH
Confidence 44444333 345699999999999999985
|
| >2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities, enzyme evolution, hyperthermophilic, lactonase, hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus solfataricus} PDB: 2vc5_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=3.3e-10 Score=106.76 Aligned_cols=263 Identities=13% Similarity=0.058 Sum_probs=131.3
Q ss_pred cccccccccccCcCCC--CC-h-----hhHH---HHHHHHHcCCceEEecCcCCCCC-cHHHHHHHHHHHhccccceece
Q 014320 106 GGIDPHTHLAMEFMGS--ET-I-----DDFF---SGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGF 173 (427)
Q Consensus 106 G~ID~H~H~~~~~~g~--~~-~-----e~~~---~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 173 (427)
||||+|+|+....... .+ . ++.. .....+.+.|||++++....... ......+..++.+.+.+...++
T Consensus 17 G~iD~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gv~~iv~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~ 96 (314)
T 2vc7_A 17 GFTLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRFMEKVVKATGINLVAGTGI 96 (314)
T ss_dssp CSEESSCBSCBCCHHHHHHCGGGCCHHHHHHHHHHHHHHHHHTTCCEEEECCCBTTTCCHHHHHHHHHHHCCEEEECEEB
T ss_pred CCcccccccccCcchhcccCcchhhhcccHHHHHHHHHHHHHcCCCEEEecCCCCCCcCHHHHHHHHHHcCCeEEEEeec
Confidence 9999999997631010 00 1 1221 12356778999999988643222 3333333333332233334455
Q ss_pred ecccc--CC-ChhhHHHHHHHHH---HcCCC-------eEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecC-C-h
Q 014320 174 HMAIT--KW-DEVVSDEMEVMVK---EKGIN-------SFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE-N-G 238 (427)
Q Consensus 174 ~~~~~--~~-~~~~~~~~~~l~~---~~g~~-------~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e-~-~ 238 (427)
+.... .. .+...+++.+++. ..|+. .+++.+++........+.+++.++.|+++|++|.+|+. . .
T Consensus 97 hp~~~~~~~~~~~~~~~l~~~~~~~~~~gige~G~~~g~i~~~ld~~~~~~~q~~~~~~~~~lA~~~~~pv~iH~~~~~~ 176 (314)
T 2vc7_A 97 YIYIDLPFYFLNRSIDEIADLFIHDIKEGIQGTLNKAGFVKIAADEPGITKDVEKVIRAAAIANKETKVPIITHSNAHNN 176 (314)
T ss_dssp CCSSCCCGGGTTCCHHHHHHHHHHHHHTCSSSSSCCCCSEEEECCTTCSCHHHHHHHHHHHHHHHHHCCCEEEECCTTTT
T ss_pred CCCCCCchhhhccCHHHHHHHHHHHHHhhcccCCCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHHHCCEEEEeCCCccc
Confidence 43211 11 1122444544432 12322 24555565432222235678899999999999999985 2 2
Q ss_pred hhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccc
Q 014320 239 DAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSG 318 (427)
Q Consensus 239 ~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~ 318 (427)
.. .+..+.+.+.|+. ..++.+.|+......+.++++.+.|..+..+.+..
T Consensus 177 ~~-~~~~~~l~~~~~~----------------------------~~~~~i~H~~~~~~~~~~~~~~~~G~~i~~~~~~~- 226 (314)
T 2vc7_A 177 TG-LEQQRILTEEGVD----------------------------PGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYGL- 226 (314)
T ss_dssp HH-HHHHHHHHHTTCC----------------------------GGGEEETTGGGCCCHHHHHHHHHTTCEEEECCTTC-
T ss_pred Ch-HHHHHHHHHcCCC----------------------------cccEEEECCCCCCCHHHHHHHHHcCCEEEEeCCCc-
Confidence 21 1222222222211 12566889854222466778888887666532110
Q ss_pred eeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhc--CCceEEecCCCCCCh--hhhhcCCCCCccCCCCCc--h
Q 014320 319 LVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALAT--GILQLVGTDHCAFNS--TQKAFGIDDFRKIPNGVN--G 392 (427)
Q Consensus 319 l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~--G~~~~lgSD~~p~~~--~~~~~~~~~~~~~~~G~~--~ 392 (427)
. . .+ +.....+.+.+.+.. +..+.++||. |+.+ ... +++.. +.|-+ +
T Consensus 227 ~----------------~---~~--~~~~~~~~i~~~~~~g~~drilleTD~-~~~~~~~~~----~p~~~-~~g~~~~~ 279 (314)
T 2vc7_A 227 D----------------L---FL--PVDKRNETTLRLIKDGYSDKIMISHDY-CCTIDWGTA----KPEYK-PKLAPRWS 279 (314)
T ss_dssp T----------------T---TS--CHHHHHHHHHHHHHTTCTTTEEECCCC-BSSBCCGGG----CTTSH-HHHCTTCS
T ss_pred c----------------c---CC--CHHHHHHHHHHHHHcCCCCeEEEcCCc-ccccccccc----chhhh-hcCCCCcC
Confidence 0 0 00 001223456667775 4556999996 4321 000 01100 01111 2
Q ss_pred hhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 393 IEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 393 ~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
....++.....+ ...+++.+++.++++.||+|+
T Consensus 280 ~~~~~~~~~~~l-~~~g~~~e~~~~~~~~N~~rl 312 (314)
T 2vc7_A 280 ITLIFEDTIPFL-KRNGVNEEVIATIFKENPKKF 312 (314)
T ss_dssp TTHHHHTHHHHH-HHTTCCHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHH-HHcCCCHHHHHHHHHHCHHHH
Confidence 222233333222 345799999999999999985
|
| >2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET: KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A* 1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A 1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A* 1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ... | Back alignment and structure |
|---|
Probab=99.13 E-value=1.8e-09 Score=102.30 Aligned_cols=270 Identities=13% Similarity=0.033 Sum_probs=133.5
Q ss_pred cccccccccccCcCCC--CC-h-----hhHHH----HHHHHHcCCceEEecCcCCCC-CcHHHHHHHHHHHhccccceec
Q 014320 106 GGIDPHTHLAMEFMGS--ET-I-----DDFFS----GQAAALAGGTTMHIDFVIPIN-GSLTAGFEAYEKKAKNSCMDYG 172 (427)
Q Consensus 106 G~ID~H~H~~~~~~g~--~~-~-----e~~~~----~~~~~l~~GvTtv~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 172 (427)
||||+|+|+....... .. . ++... ....+.+.|||++++.+.... .......+..++.+.+.+...+
T Consensus 16 GliD~H~HL~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~aGV~~iv~~~~~~~~~~~~~~~~la~~~~~~i~~~~G 95 (330)
T 2ob3_A 16 GFTLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAEVSRAADVHIVAATG 95 (330)
T ss_dssp CSEEEEECSEECCTTHHHHCGGGGSCHHHHHHHHHHHHHHHHHTTCCEEEECCCGGGTCCHHHHHHHHHHHTCEEECEEE
T ss_pred CCceeeeCeecCCchhccCCCchhhhccCHHHHHHHHHHHHHHcCCCEEEeCCCCCcCCCHHHHHHHHHHhCCcEEEEec
Confidence 9999999997631110 00 1 22222 256678899999999864211 2233333322222223444556
Q ss_pred eec--cc-c-CCChhhH-HHHHHHHHH----c--CCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecC--Chh
Q 014320 173 FHM--AI-T-KWDEVVS-DEMEVMVKE----K--GINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE--NGD 239 (427)
Q Consensus 173 ~~~--~~-~-~~~~~~~-~~~~~l~~~----~--g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e--~~~ 239 (427)
+|. +. . ....+.+ +.+.+.+.. . .+..+++.++ ........+.+++.++.|++.|+||.+|+. +.+
T Consensus 96 ~hp~~p~~~~~~~~~~l~~~l~~~~~~gi~~~~~k~~aiEiGld-~~~~~~q~~~f~~q~~lA~~~glPv~iH~~~~~r~ 174 (330)
T 2ob3_A 96 LWFDPPLSMRLRSVEELTQFFLREIQYGIEDTGIRAGIIKVATT-GKATPFQELVLKAAARASLATGVPVTTHTAASQRD 174 (330)
T ss_dssp CCSCCCHHHHTCCHHHHHHHHHHHHHTCSTTSCCCCSEEEEECS-SSCCHHHHHHHHHHHHHHHHHCCCEEEECCGGGTH
T ss_pred CCcCCCchhccCCHHHHHHHHHHHHHhhccccccceeEEEEeCC-CCCCHHHHHHHHHHHHHHHHhCCeEEEECCCCCCC
Confidence 652 11 1 1112222 223333211 1 3455677666 211111223488889999999999999985 232
Q ss_pred hHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCC---CEEEEcCC-CHHHHHHHHHHhhcCCCEEEecC
Q 014320 240 AVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNT---PLYVVHVM-SMDAMEEIAKARKAGQRVIGEPV 315 (427)
Q Consensus 240 ~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~---~~~i~H~~-~~~~~~~i~~~~~~G~~v~~~~~ 315 (427)
.. +.. ++.++.+. ++.+.|+. +.+ .+..+++.+.|..+.....
T Consensus 175 a~-e~l-------------------------------~iL~~~g~~~~~~~i~H~f~~~~-~e~a~~~~~~G~~i~~~~~ 221 (330)
T 2ob3_A 175 GE-QQA-------------------------------AIFESEGLSPSRVCIGHSDDTDD-LSYLTALAARGYLIGLDHI 221 (330)
T ss_dssp HH-HHH-------------------------------HHHHHTTCCGGGEEECSGGGCCC-HHHHHHHHHTTCEEEECCT
T ss_pred HH-HHH-------------------------------HHHHHcCcCcccEEEeCCCCCCC-HHHHHHHHhCCCEEEeCCC
Confidence 22 222 22233332 44688986 443 4778888889977665421
Q ss_pred ccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcC--CceEEecCCCCC-Chh-----hhhcCCCCCccCC
Q 014320 316 VSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATG--ILQLVGTDHCAF-NST-----QKAFGIDDFRKIP 387 (427)
Q Consensus 316 p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G--~~~~lgSD~~p~-~~~-----~~~~~~~~~~~~~ 387 (427)
. ...+..... .+... .. ..++ .....+.+.++++.| ..+.++||. |+ ... .+..+ .+.|
T Consensus 222 G-~~tf~~~~~-~~~~~--~~--~~~~--~~~~~~~l~~~~~~~p~drilleTD~-p~~l~~~~~~~g~~~~----~n~p 288 (330)
T 2ob3_A 222 P-YSAIGLEDN-ASASA--LL--GIRS--WQTRALLIKALIDQGYMKQILVSNDW-TFGFSSYVTNIMDVMD----RVNP 288 (330)
T ss_dssp T-CCCTTCTTC-HHHHH--HH--CSSC--HHHHHHHHHHHHHTTCGGGEEECCCC-CSEECSSSTTHHHHHH----HHCT
T ss_pred c-ccccccccc-ccccc--cc--cCCC--HHHHHHHHHHHHHhCCCCeEEEeCCC-CCCcccccccCCCccc----ccCC
Confidence 1 111100000 00000 00 0011 012235688899998 667999995 54 110 00000 0001
Q ss_pred CCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 388 NGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 388 ~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
. +....+......+.+ .+++++++.+++|.||+|+
T Consensus 289 n---~~~~~~~~~ia~l~~-~G~~~eev~~~~t~N~~rl 323 (330)
T 2ob3_A 289 D---GMAFIPLRVIPFLRE-KGVPQETLAGITVTNPARF 323 (330)
T ss_dssp T---GGGHHHHTHHHHHHH-TTCCHHHHHHHHTHHHHHH
T ss_pred C---CcchHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHH
Confidence 0 111112222222333 5799999999999999985
|
| >1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.8e-08 Score=92.10 Aligned_cols=240 Identities=16% Similarity=0.088 Sum_probs=126.2
Q ss_pred ccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceecccc-CCChhhH
Q 014320 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAIT-KWDEVVS 185 (427)
Q Consensus 107 ~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 185 (427)
+||+|+|+..... ..+.......+.+.||+++++.+... ....... ...+..+.....++++.... ...++.+
T Consensus 5 ~iD~H~Hl~~~~~----~~~~~~~l~~~~~~Gv~~~v~~~~~~-~~~~~~~-~l~~~~~~~~~~~G~hP~~~~~~~~~~~ 78 (259)
T 1zzm_A 5 FIDTHCHFDFPPF----SGDEEASLQRAAQAGVGKIIVPATEA-ENFARVL-ALAENYQPLYAALGLHPGMLEKHSDVSL 78 (259)
T ss_dssp EEESCBCTTSTTT----TTCHHHHHHHHHHTTEEEEEEECCSG-GGHHHHH-HHHHHCTTEEEEECCCGGGGGGCCHHHH
T ss_pred EEEeeecCCchhh----ccCHHHHHHHHHHcCCCEEEEecCCH-HHHHHHH-HHHHhCCCeEEEEEecccccccCCHHHH
Confidence 8999999976411 12233335667889999998764321 1222222 22222233223344443221 2234456
Q ss_pred HHHHHHHHH--cCCCeE-EEEEecCCCc---cCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccc
Q 014320 186 DEMEVMVKE--KGINSF-KFFMAYKGSF---MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGH 259 (427)
Q Consensus 186 ~~~~~l~~~--~g~~~i-k~~~~~~~~~---~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~ 259 (427)
+++++++.. .++.++ .+.++++... ....+.++..++.|+++|+||.+|+.+.. ...
T Consensus 79 ~~l~~~~~~~~~~~~~iGEiGld~~~~~~~~~~q~~~f~~~~~~a~~~~~Pv~iH~~~a~--~~~--------------- 141 (259)
T 1zzm_A 79 EQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTH--DKL--------------- 141 (259)
T ss_dssp HHHHHHHHHCCSSEEEEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESCH--HHH---------------
T ss_pred HHHHHHHhcCCCCEEEEEEeccCCCCCCCCHHHHHHHHHHHHHHHHHhCCcEEEEecccH--HHH---------------
Confidence 777777644 344444 3344543211 12245788999999999999999984321 111
Q ss_pred cccCCHHHHHHHHHHHHHHHHhcC--CCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCcee
Q 014320 260 ALSRPPLLEGEATTRAIRLAEFVN--TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKY 337 (427)
Q Consensus 260 ~~~~p~~~e~~a~~~~~~~~~~~g--~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~ 337 (427)
+++.++.+ .+. +.|+.+.. .+.++++.+.|+.+.. .+... +
T Consensus 142 ----------------~~il~~~~~~~~~-i~H~~~g~-~~~~~~~~~~g~~i~~--~g~~~-~---------------- 184 (259)
T 1zzm_A 142 ----------------AMHLKRHDLPRTG-VVHGFSGS-LQQAERFVQLGYKIGV--GGTIT-Y---------------- 184 (259)
T ss_dssp ----------------HHHHHHHCCTTCE-EETTCCSC-HHHHHHHHHTTCEEEE--CGGGG-C----------------
T ss_pred ----------------HHHHHhcCCCCCE-EEEcCCCC-HHHHHHHHHCCCEEEE--Cceee-c----------------
Confidence 12222222 234 45986543 3556666677755443 22100 0
Q ss_pred EEcCCCCCcccHHHHHHHHhcC--CceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHH
Q 014320 338 VMSPPIRASGHNKALQAALATG--ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDY 415 (427)
Q Consensus 338 ~~~pplr~~~~~~~l~~~l~~G--~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~ 415 (427)
+ +.. .++++++.. ..+.++||. |+..... ..|-.+....++..+..+.+..+++.+++
T Consensus 185 ---~--~~~----~~~~~~~~~~~dril~eTD~-P~~~p~~----------~~g~~~~p~~l~~~~~~la~~~g~~~e~~ 244 (259)
T 1zzm_A 185 ---P--RAS----KTRDVIAKLPLASLLLETDA-PDMPLNG----------FQGQPNRPEQAARVFAVLCELRREPADEI 244 (259)
T ss_dssp ---T--TTC----SHHHHHHHSCGGGEEECCCB-TSSCCTT----------CTTSCCCGGGHHHHHHHHHHHCSSCHHHH
T ss_pred ---c--ccH----HHHHHHHhCCHHHEEEecCC-CCccCCC----------CCCCCCcHHHHHHHHHHHHHHHCcCHHHH
Confidence 0 000 133344332 467999996 6542211 01211112234444434444567999999
Q ss_pred HHHHchhhhcC
Q 014320 416 VRLTSTEWGRL 426 (427)
Q Consensus 416 v~~~t~npA~~ 426 (427)
.+.++.|++|+
T Consensus 245 ~~~~~~Na~rl 255 (259)
T 1zzm_A 245 AQALLNNTYTL 255 (259)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
|
| >3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.83 E-value=9.2e-08 Score=88.31 Aligned_cols=245 Identities=13% Similarity=0.083 Sum_probs=134.0
Q ss_pred ccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhcc----ccceeceecccc-CCC
Q 014320 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKN----SCMDYGFHMAIT-KWD 181 (427)
Q Consensus 107 ~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~ 181 (427)
|||+|+|+....+ .++.......+...||..++..+... ......++ +.+..+. .+..+|+|.... ...
T Consensus 3 ~iD~H~HL~~~~~----~~d~~~vl~~a~~~gV~~~v~~g~~~-~~~~~~~~-la~~~~~~~~~v~~~~GiHP~~~~~~~ 76 (287)
T 3rcm_A 3 LIDIGVNLTNSSF----HDQQAAIVERALEAGVTQMLLTGTSL-AVSEQALE-LCQQLDASGAHLFATAGVHPHDAKAWD 76 (287)
T ss_dssp EEEEEECTTCGGG----TTCHHHHHHHHHHTTEEEEEECCCSH-HHHHHHHH-HHHHHCTTSSSEEEEECCCGGGGGGCC
T ss_pred eEEEeecCCchhc----ccCHHHHHHHHHHcCCeEEEEecCCH-HHHHHHHH-HHHhCCCCCceEEEEEEECcCccccCC
Confidence 8999999976411 22344446778889999988653211 11222222 2222222 344556554322 223
Q ss_pred hhhHHHHHHHHHHcCCCeEE-EEEecCCCc---cCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcc
Q 014320 182 EVVSDEMEVMVKEKGINSFK-FFMAYKGSF---MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPE 257 (427)
Q Consensus 182 ~~~~~~~~~l~~~~g~~~ik-~~~~~~~~~---~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~ 257 (427)
++.++.++++++...+..|. +.+++.... ....+.+++.++.|+++++||.+|+.+. ....
T Consensus 77 ~~~~~~l~~l~~~~~vvaIGEiGLD~~~~~~~~~~Q~~~F~~ql~lA~e~~lPv~iH~r~a--~~~~------------- 141 (287)
T 3rcm_A 77 TDSERQLRLLLSEPRVRAVGECGLDFNRDFSPRPLQEKALEAQLTLAAQLRLPVFLHERDA--SERL------------- 141 (287)
T ss_dssp TTHHHHHHHHHTSTTEEEEEEEEEETTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESC--HHHH-------------
T ss_pred HHHHHHHHHHhcCCCeEEEEEeeeCCCcccCcHHHHHHHHHHHHHHHHHhCCCEEEEcCCc--HHHH-------------
Confidence 45677788777444455665 345654211 1135678899999999999999998532 1111
Q ss_pred cccccCCHHHHHHHHHHHHHHHHhcC---CCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccC
Q 014320 258 GHALSRPPLLEGEATTRAIRLAEFVN---TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTA 334 (427)
Q Consensus 258 ~~~~~~p~~~e~~a~~~~~~~~~~~g---~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~ 334 (427)
+++.++.+ .+. +.|+.+.. .+.++++.+.|..+.. ... +.+
T Consensus 142 ------------------l~il~~~~~~~~~~-V~H~fsG~-~e~a~~~l~~G~yis~--~g~-i~~------------- 185 (287)
T 3rcm_A 142 ------------------LAILKDYRDHLTGA-VVHCFTGE-REALFAYLDLDLHIGI--TGW-ICD------------- 185 (287)
T ss_dssp ------------------HHHHHTTGGGCSCE-EECSCCCC-HHHHHHHHHTTCEEEE--CGG-GGC-------------
T ss_pred ------------------HHHHHHcCCCCCeE-EEEeCCCC-HHHHHHHHHCCcEEEE--Cch-hcc-------------
Confidence 12222221 233 56885543 4667777777865553 211 100
Q ss_pred ceeEEcCCCCCcccHHHHHHHHhcC--CceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCH
Q 014320 335 AKYVMSPPIRASGHNKALQAALATG--ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISV 412 (427)
Q Consensus 335 ~~~~~~pplr~~~~~~~l~~~l~~G--~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l 412 (427)
.-|. +.+++.++.- ..+.+.||. |+.... ++...+.|-.+-...++..+..+.+..+++.
T Consensus 186 -------~k~~----~~l~~~v~~ip~drlLlETD~-P~l~p~------~~~~~~rg~~n~P~~l~~v~~~lA~~~g~s~ 247 (287)
T 3rcm_A 186 -------ERRG----THLHPLVGNIPEGRLMLESDA-PYLLPR------SLRPKPKSGRNEPAFLPEVLREVALHRGESA 247 (287)
T ss_dssp -------TTTC----GGGHHHHTTSCTTSEEECCCT-TSCCCT------TCSSCCTTCCCCGGGHHHHHHHHHHHHTSCH
T ss_pred -------ccCH----HHHHHHHHhcCCccEEEeccC-CccCcc------ccccccCCCcCCHHHHHHHHHHHHHHhCcCH
Confidence 0001 1133444432 468999995 664321 1101113443444456665544444567999
Q ss_pred HHHHHHHchhhhcC
Q 014320 413 TDYVRLTSTEWGRL 426 (427)
Q Consensus 413 ~~~v~~~t~npA~~ 426 (427)
+++.+.++.|+.|+
T Consensus 248 eev~~~~~~N~~rl 261 (287)
T 3rcm_A 248 EHTAAHTTATARDF 261 (287)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999875
|
| >3k2g_A Resiniferatoxin-binding, phosphotriesterase- related protein; TIM barrel, binuclear zinc, protein structure initiative II (PSI II); 1.80A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=98.77 E-value=5.2e-07 Score=86.09 Aligned_cols=244 Identities=13% Similarity=0.048 Sum_probs=123.2
Q ss_pred HHHHHHHHcCCceEEecCcCCCCC-cHHHHHHHHHHHhccccceeceecccc--C-CChhhHHHHHHHHHH---cC----
Q 014320 128 FSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAIT--K-WDEVVSDEMEVMVKE---KG---- 196 (427)
Q Consensus 128 ~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~l~~~---~g---- 196 (427)
....+.+.+.||+++++....... ......+..++.+.+.+...|++.... . ..+...+++.++... .|
T Consensus 89 ~~~l~~~~~aGv~tiV~~t~~g~gr~~~~l~~la~~~gv~i~~~tG~y~~~~~P~~~~~~~~~~L~~~~~~ei~~Gi~~~ 168 (364)
T 3k2g_A 89 IAEVKQFAAVGGRSIVDPTCRGIGRDPVKLRRISAETGVQVVMGAGYYLASSMPETAARLSADDIADEIVAEALEGTDGT 168 (364)
T ss_dssp HHHHHHHHHTTCCEEEECCCBTTTCCHHHHHHHHHHHCCEEEECCSBCCGGGCCGGGGTCCHHHHHHHHHHHHHTCBTTB
T ss_pred HHHHHHHHhcCCCeEEEeCCCcccCCHHHHHHHHHHhCCcEEEEeCccCCCCCchhhccCCHHHHHHHHHHHHHhccccC
Confidence 344566788999999998633222 333333323333224444455552111 1 011123444433211 22
Q ss_pred ---CCeE-EEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCCh-hhHHHHHHHHHHcCCCCcccccccCCHHHHHHH
Q 014320 197 ---INSF-KFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG-DAVFEGQKRMIELGITGPEGHALSRPPLLEGEA 271 (427)
Q Consensus 197 ---~~~i-k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~-~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a 271 (427)
+..| ++.+++ .......+.+++.++.|++.|+||.+|+.+. +...+..+.+.+.|..
T Consensus 169 ~vkag~IGEiGld~-~~t~~q~~~f~aq~~~A~~~glPV~iH~~gr~~a~~e~l~iL~e~g~~----------------- 230 (364)
T 3k2g_A 169 DARIGLIGEIGVSS-DFTAEEEKSLRGAARAQVRTGLPLMVHLPGWFRLAHRVLDLVEEEGAD----------------- 230 (364)
T ss_dssp SCCCSSEEEEECCT-TCCHHHHHHHHHHHHHHHHHCCCEEEECCTTSCCHHHHHHHHHHTTCC-----------------
T ss_pred CcceeEEEEEEcCC-CCCHHHHHHHHHHHHHHHHHCCeEEEecCCCCccHHHHHHHHHHcCCC-----------------
Confidence 2235 344554 1111224568888999999999999998422 2222222222222211
Q ss_pred HHHHHHHHHhcCCCEEEEcCCC-HHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHH
Q 014320 272 TTRAIRLAEFVNTPLYVVHVMS-MDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNK 350 (427)
Q Consensus 272 ~~~~~~~~~~~g~~~~i~H~~~-~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~ 350 (427)
..++.+.|+.. ....+..+++.+.|..+..+..-...++-.. .. ..|. .....+
T Consensus 231 -----------~~~vvi~H~~~s~~~~e~a~~~l~~G~~I~f~g~gt~~~f~~~-----------~~-~~~~--d~~ra~ 285 (364)
T 3k2g_A 231 -----------LRHTVLCHMNPSHMDPVYQATLAQRGAFLEFDMIGMDFFYADQ-----------GV-QCPS--DDEVAR 285 (364)
T ss_dssp -----------GGGEEECCCGGGTTCHHHHHHHHHHTCEEEECCTTCCCEETTT-----------TE-ECCC--HHHHHH
T ss_pred -----------CCceEEECCCCCCCCHHHHHHHHhCCcEEEecCCccccccccc-----------cc-cccc--HHHHHH
Confidence 02366789973 3246778888888976655322110001000 00 0010 011346
Q ss_pred HHHHHHhcCC--ceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 351 ALQAALATGI--LQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 351 ~l~~~l~~G~--~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
.+.++++.|- .+.++||. |.....+.. .| .+....+.... ..+...+++.+++.+++|.||+|+
T Consensus 286 ~l~~lv~~gp~drilleTD~-p~~~~~~~~---------gg-~~~~~l~~~~~-~~l~~~Gis~eei~~~~~~Np~rl 351 (364)
T 3k2g_A 286 AILGLADHGYLDRILLSHDV-FVKMMLTRY---------GG-NGYAFVTKHFL-PRLRRHGLDDAALETLMVTNPRRV 351 (364)
T ss_dssp HHHHHHHTTCGGGEEECCCC-CSGGGSGGG---------TS-CTTSHHHHHHH-HHHHHTTCCHHHHHHHHTHHHHHH
T ss_pred HHHHHHHhCCcccEEEeCCC-CCCCCCCCC---------CC-CCcchHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHH
Confidence 6888888884 68999995 543222111 12 22222222222 122346799999999999999985
|
| >2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-06 Score=80.11 Aligned_cols=237 Identities=15% Similarity=0.077 Sum_probs=124.2
Q ss_pred cccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhc-cccceeceeccc-cC----
Q 014320 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK-NSCMDYGFHMAI-TK---- 179 (427)
Q Consensus 106 G~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~---- 179 (427)
++||+|+|+..... ..+.......+...||+++++.+... .......+ ..+..+ +....++++... ..
T Consensus 5 ~~iD~H~Hl~~~~~----~~~~~~~l~~~~~~Gv~~~v~~~~~~-~~~~~~~~-l~~~~~~~i~~~~GihP~~~~~~~~~ 78 (272)
T 2y1h_A 5 GLVDCHCHLSAPDF----DRDLDDVLEKAKKANVVALVAVAEHS-GEFEKIMQ-LSERYNGFVLPCLGVHPVQGLPPEDQ 78 (272)
T ss_dssp CEEEEEECTTSGGG----TTTHHHHHHHHHHTTEEEEEECCSSG-GGHHHHHH-HHHHTTTTEEEEECCCSBC-------
T ss_pred cEEEEeeCCCchhh----hcCHHHHHHHHHHCCCCEEEEeCCCH-HHHHHHHH-HHHHCCCCEEEEEEECCCcccccccc
Confidence 59999999976411 12333335667889999999875321 12222222 222222 233344554322 11
Q ss_pred --CChhhHHHHHHHHHH--cCCCeEEE-EEecCCCc-------cCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHH
Q 014320 180 --WDEVVSDEMEVMVKE--KGINSFKF-FMAYKGSF-------MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKR 247 (427)
Q Consensus 180 --~~~~~~~~~~~l~~~--~g~~~ik~-~~~~~~~~-------~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~ 247 (427)
...+.++++.+++.. ..+..++. .++++... ....+.++..++.|+++|+||.+|+.+.. ...
T Consensus 79 ~~~~~~~~~~l~~~~~~~~~~~~~iGE~Gld~~~~~~~~~~~~~~q~~~f~~~~~la~~~~lPv~iH~~~a~--~~~--- 153 (272)
T 2y1h_A 79 RSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTGEQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAG--RPT--- 153 (272)
T ss_dssp CBCCHHHHHHHHHHHHHHGGGCSEEEEEECCCCTTTCCSHHHHHHHHHHHHHHHHHHHHHTCCEEEECTTCH--HHH---
T ss_pred ccCCHHHHHHHHHHHHhCCCCEEEEEeccCCCccccCCCCCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCcH--HHH---
Confidence 123445666666632 34556643 34431111 11245788999999999999999985421 111
Q ss_pred HHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcC-CCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccc
Q 014320 248 MIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN-TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWL 326 (427)
Q Consensus 248 l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g-~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~ 326 (427)
+++.++.+ .++.+ |+.... .+.++++.+.|+.+.. .+...
T Consensus 154 ----------------------------~~il~~~~~~~~v~-H~~~g~-~~~~~~~~~~g~~i~~--~g~~~------- 194 (272)
T 2y1h_A 154 ----------------------------INLLQEQGAEKVLL-HAFDGR-PSVAMEGVRAGYFFSI--PPSII------- 194 (272)
T ss_dssp ----------------------------HHHHHHTTCCSEEE-ETCCSC-HHHHHHHHHTTCEEEE--CGGGG-------
T ss_pred ----------------------------HHHHHhCCCCCEEE-EccCCC-HHHHHHHHHCCCEEEE--CCccc-------
Confidence 12222332 35545 885543 3666777777754443 32100
Q ss_pred cCCCcccCceeEEcCCCCCcccHHHHHHHHhcC--CceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHH
Q 014320 327 WHSDFVTAAKYVMSPPIRASGHNKALQAALATG--ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTM 404 (427)
Q Consensus 327 ~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G--~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~ 404 (427)
... .+++.++.. ..+.++||. |+....+ |-.+....++..+..+
T Consensus 195 -----------------~~~----~~~~~~~~~~~drll~eTD~-P~~~p~~------------g~~~~p~~l~~~~~~l 240 (272)
T 2y1h_A 195 -----------------RSG----QKQKLVKQLPLTSICLETDS-PALGPEK------------QVRNEPWNISISAEYI 240 (272)
T ss_dssp -----------------TCH----HHHHHHHHSCGGGEEECCCT-TSSCSST------------TSCCCGGGHHHHHHHH
T ss_pred -----------------CcH----HHHHHHHhCCHHHEEEecCC-CCCCCCC------------CCcCcHHHHHHHHHHH
Confidence 011 244444432 356999996 6432111 1111111233333223
Q ss_pred HhcCCCCHHHHHHHHchhhhcC
Q 014320 405 VESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 405 ~~~~~l~l~~~v~~~t~npA~~ 426 (427)
.+..+++.+++.+.++.||+|+
T Consensus 241 a~~~g~~~e~~~~~~~~N~~~l 262 (272)
T 2y1h_A 241 AQVKGISVEEVIEVTTQNALKL 262 (272)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHHHH
Confidence 2334799999999999999975
|
| >3pnz_A Phosphotriesterase family protein; amidohydrolase fold; HET: KCX; 1.60A {Listeria monocytogenes serotype 4b strorganism_taxid} SCOP: c.1.9.0 | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-07 Score=89.49 Aligned_cols=261 Identities=15% Similarity=0.106 Sum_probs=133.4
Q ss_pred cccccccccccCcC----------CCCChhhHHHHHHHHHcCCceEEecCcCCCCCcHHHHHHHH-HHHhccccceecee
Q 014320 106 GGIDPHTHLAMEFM----------GSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAY-EKKAKNSCMDYGFH 174 (427)
Q Consensus 106 G~ID~H~H~~~~~~----------g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 174 (427)
|++.+|=|+..... ...+.+......+...+.|++|++|+...........+++. ++.+.+....-+++
T Consensus 17 G~t~~HEHl~~~~~~~~~~~~~~~~l~~~~~~~~el~~~~~~G~~tiVd~t~~~~gR~~~~l~~is~~tgv~iv~~TG~y 96 (330)
T 3pnz_A 17 GFTYSHEHIVCVPAYWQERDADDLLLDDKEKSQLDVQDFADLGGKTIVDATAVDYGRRVLDVAQISKETGIQIVGTAGFN 96 (330)
T ss_dssp CSEEEEECCSBCCHHHHTTTCGGGCBCCHHHHHHHHHHHHHTTCCEEEECCCGGGCBCHHHHHHHHHHHCCEEEEEEECC
T ss_pred CCceeccCceecChhhhhcCCCcccccCHHHHHHHHHHHHHhCCCEEEECCCCccccCHHHHHHHHHHhCCEEEEeCCCC
Confidence 77888888754210 01122333445666778999999998644333222233333 33333333333443
Q ss_pred cccc--------------------CC----C-hhhHHHHHHHHHHcCC-----C--eEEEEEecCCCccCCHHHHHHHHH
Q 014320 175 MAIT--------------------KW----D-EVVSDEMEVMVKEKGI-----N--SFKFFMAYKGSFMINDELLIEGFK 222 (427)
Q Consensus 175 ~~~~--------------------~~----~-~~~~~~~~~l~~~~g~-----~--~ik~~~~~~~~~~~~~~~l~~~~~ 222 (427)
.... .+ . ++..+.+.+-+ ..|+ . .+++.++++.......+.+++.++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~ei-~~Gi~~t~vkaGvIEiGld~~~~~~~q~~~f~aq~~ 175 (330)
T 3pnz_A 97 KSFLWDGKIKPELKPIIGDFETYYEWIENTTTDKLTEFVVNEV-ENGLEGTPYKAGQVKFGTGYNMITPLEEKTIRAVAR 175 (330)
T ss_dssp CGGGGGSBCCGGGHHHHCSCSBHHHHHHTSCHHHHHHHHHHHH-HTCSTTSSCCEEEEEEECBTTBCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccCchhhccCCHHHHHHHHHHHH-HhhCCCcCcCcCeEEEEcCCCCCCHHHHHHHHHHHH
Confidence 2110 00 1 11112222222 2333 2 267777765332233567889999
Q ss_pred HHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCC-CHHHHHHHH
Q 014320 223 RCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM-SMDAMEEIA 301 (427)
Q Consensus 223 ~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~-~~~~~~~i~ 301 (427)
.|++.|+||.+|+.......+..+.+++.|.. ..++.+.|+. +. +.+..+
T Consensus 176 ~A~~~glPViiH~r~g~~a~~~l~iL~e~~~~----------------------------~~~vvi~H~~~s~-~~e~a~ 226 (330)
T 3pnz_A 176 AHHETKAPIHSHTEAGTMALEQIEILKQENIP----------------------------LEYLSIGHMDRNL-DPYYHK 226 (330)
T ss_dssp HHHHHCCCEEEECGGGCCHHHHHHHHHHTTCC----------------------------GGGEEETTGGGSC-CHHHHH
T ss_pred HHHHHCCeEEEeCCCCcChHHHHHHHHHcCCC----------------------------CCeEEEecCCCCC-CHHHHH
Confidence 99999999999985321111112222222211 1246678985 43 356777
Q ss_pred HHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCC--ceEEecCCCCCChhhhhcC
Q 014320 302 KARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGI--LQLVGTDHCAFNSTQKAFG 379 (427)
Q Consensus 302 ~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~--~~~lgSD~~p~~~~~~~~~ 379 (427)
++.+.|..+..+.... ++ .+| .....+.+.+.++.|. .+.++||. |.....+-.+
T Consensus 227 ~~l~~G~~i~~~g~~t-------------------~~-~~~--~~~~~~~l~~lv~~g~~drilleTD~-p~~~~~~~~G 283 (330)
T 3pnz_A 227 QVAKTGAFMSFDGIAK-------------------IK-YAP--ESARIAAILYLVSEGFEDQILVSGDT-ARKTYYKHYG 283 (330)
T ss_dssp HHHTTTCEEEECCTTC-------------------TT-TCC--HHHHHHHHHHHHHTTCGGGEEECCCC-CSGGGSHHHH
T ss_pred HHHHcCcEEEEccCcc-------------------cC-CCC--hHHHHHHHHHHHHcCCCCeEEEeCCC-CCCCCCCccC
Confidence 7778886655422110 00 001 0112345777887774 68999995 5422211110
Q ss_pred CCCCccCCCCCchh-hHhHHHHHHHHHhcCCCCHHH-HHHHHchhhhcC
Q 014320 380 IDDFRKIPNGVNGI-EERMHLVWDTMVESGQISVTD-YVRLTSTEWGRL 426 (427)
Q Consensus 380 ~~~~~~~~~G~~~~-e~~l~~~~~~~~~~~~l~l~~-~v~~~t~npA~~ 426 (427)
..+|..-+ ....|.+. ..++..+++.++ +.++++.||+|+
T Consensus 284 ------~~~~~~~~~~~~~~~l~-~~a~~~Gis~ee~i~~~t~~Np~rl 325 (330)
T 3pnz_A 284 ------HGPGLEYIAKKWVPRFI-DEANEKGFDGEKLVKKFFVDNPARC 325 (330)
T ss_dssp ------CCSTTTHHHHTHHHHHH-HHHHHTTSCHHHHHHHHHTHHHHHH
T ss_pred ------CCCCcchHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHhHHHH
Confidence 01233222 12223221 113457899998 999999999985
|
| >1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=98.69 E-value=9.6e-07 Score=80.67 Aligned_cols=245 Identities=12% Similarity=0.076 Sum_probs=123.0
Q ss_pred ccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceecccc-CCChhhH
Q 014320 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAIT-KWDEVVS 185 (427)
Q Consensus 107 ~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 185 (427)
+||+|+|+..... ..+.......+...||+++++..... ......++ ..+..+.....++++.... ...++.+
T Consensus 5 ~iD~H~Hl~~~~~----~~~~~~~l~~~~~~Gv~~~v~~~~~~-~~~~~~~~-l~~~~~~i~~~~G~hP~~~~~~~~~~~ 78 (264)
T 1xwy_A 5 MFDIGVNLTSSQF----AKDRDDVVACAFDAGVNGLLITGTNL-RESQQAQK-LARQYSSCWSTAGVHPHDSSQWQAATE 78 (264)
T ss_dssp CEEEEECTTSGGG----TTTHHHHHHHHHHTTCCEEEECCCSH-HHHHHHHH-HHHHSTTEEEEECCCGGGGGGCCHHHH
T ss_pred EEEEeeCCCChhh----ccCHHHHHHHHHHCCCCEEEEeCCCH-HHHHHHHH-HHHhCCCEEEEEEECCcccccCCHHHH
Confidence 8999999976411 12233335667889999988764311 11111111 1111122222333332211 2223456
Q ss_pred HHHHHHHHHcCCCeEEE-EEecCCCcc---CCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccc
Q 014320 186 DEMEVMVKEKGINSFKF-FMAYKGSFM---INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHAL 261 (427)
Q Consensus 186 ~~~~~l~~~~g~~~ik~-~~~~~~~~~---~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~ 261 (427)
++++++++..++.+++. .+++..... ...+.++..++.|+++|+||.+|+.+. ....
T Consensus 79 ~~l~~~~~~~~~~~iGE~Gld~~~~~~~~~~q~~~f~~~l~~a~~~~lpv~iH~~~a--~~~~----------------- 139 (264)
T 1xwy_A 79 EAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLRIAADLNMPVFMHCRDA--HERF----------------- 139 (264)
T ss_dssp HHHHHHHTSTTEEEEEEEEEETTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESC--HHHH-----------------
T ss_pred HHHHHHhcCCCeEEEEEeccCCCCCCCcHHHHHHHHHHHHHHHHHhCCcEEEEcCCc--hHHH-----------------
Confidence 67777663334445543 345432111 112458899999999999999998432 1111
Q ss_pred cCCHHHHHHHHHHHHHHHHhc---CCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeE
Q 014320 262 SRPPLLEGEATTRAIRLAEFV---NTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYV 338 (427)
Q Consensus 262 ~~p~~~e~~a~~~~~~~~~~~---g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~ 338 (427)
+++.++. ..++ +.|+.+.. .+.++.+.+.|+.+.. +.. +. .
T Consensus 140 --------------~~il~~~~~~~~~~-v~H~~~g~-~~~~~~~~~~g~yi~~--~g~-~~---------~-------- 183 (264)
T 1xwy_A 140 --------------MTLLEPWLDKLPGA-VLHCFTGT-REEMQACVAHGIYIGI--TGW-VC---------D-------- 183 (264)
T ss_dssp --------------HHHHGGGGGGSSCE-EECSCCCC-HHHHHHHHHTTCEEEE--CGG-GG---------C--------
T ss_pred --------------HHHHHhcCCCCCcE-EEEccCCC-HHHHHHHHHCCeEEEE--Ccc-cc---------C--------
Confidence 1222222 2455 44975433 3556666666754433 311 00 0
Q ss_pred EcCCCCCcccHHHHHHHHhcC--CceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHH
Q 014320 339 MSPPIRASGHNKALQAALATG--ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYV 416 (427)
Q Consensus 339 ~~pplr~~~~~~~l~~~l~~G--~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v 416 (427)
.+ ..+.+++.++.. ..+.++||. |+....+.. + ...|-.+....++.....+.+..+++.+++.
T Consensus 184 ----~~---~~~~l~~~~~~~~~drll~eTD~-P~~~~~~~~---~---~~~g~~n~p~~~~~~~~~~a~~~g~~~e~~~ 249 (264)
T 1xwy_A 184 ----ER---RGLELRELLPLIPAEKLLIETDA-PYLLPRDLT---P---KPSSRRNEPAHLPHILQRIAHWRGEDAAWLA 249 (264)
T ss_dssp ----TT---TSHHHHHHGGGSCGGGEEECCCT-TSCCCTTCT---T---CCCSSCCCGGGHHHHHHHHHHHHTCCHHHHH
T ss_pred ----Cc---CcHHHHHHHHhCCHHHEEEecCC-CCcCccccc---c---ccCCCCCchHHHHHHHHHHHHHHCcCHHHHH
Confidence 00 012355566543 368999996 653211000 0 0012111112333333233233479999999
Q ss_pred HHHchhhhcC
Q 014320 417 RLTSTEWGRL 426 (427)
Q Consensus 417 ~~~t~npA~~ 426 (427)
++++.|++|+
T Consensus 250 ~~~~~Na~rl 259 (264)
T 1xwy_A 250 ATTDANVKTL 259 (264)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
|
| >3rhg_A Putative phophotriesterase; hydrolase, amidohydrolase, zinc binding site, enzyme functio initiative, EFI; HET: SO4; 1.53A {Proteus mirabilis} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.2e-06 Score=83.67 Aligned_cols=241 Identities=13% Similarity=-0.007 Sum_probs=122.7
Q ss_pred HHHHHHHcCCceEEecCc-CCCC-CcHHHHHHHHHHHhccccceeceeccc--cCCChhhHHHHHHHHH---HcCC----
Q 014320 129 SGQAAALAGGTTMHIDFV-IPIN-GSLTAGFEAYEKKAKNSCMDYGFHMAI--TKWDEVVSDEMEVMVK---EKGI---- 197 (427)
Q Consensus 129 ~~~~~~l~~GvTtv~d~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~---~~g~---- 197 (427)
...+.+.+.|||++++.. .... .......+..++.+...+...|++... +.+.....+++.++.. ..|+
T Consensus 79 ~el~~~~~aGv~tiV~~~g~~g~~r~~~~l~~la~~~gi~i~~~tG~y~~~~~P~~~~~~~~~L~~~~~~ei~~gi~~t~ 158 (365)
T 3rhg_A 79 FELNNFKELGGKTIVDATGSSSIGRDIRKLKQVAELTGINVVASSGLYIEKFEGKRLADDIDAMAKMIDDELNIGIDGTD 158 (365)
T ss_dssp HHHHHHHHTTEEEEEECCCSGGGTCCHHHHHHHHHHHCCEEECEECCCCHHHHGGGGGSCHHHHHHHHHHHHHTCSTTSS
T ss_pred HHHHHHHhcCCCeEEEcCCCCCCCCCHHHHHHHHHHHCCcEEEEeCccCCCCCchhhcCCHHHHHHHHHHHHHhccccCC
Confidence 445667889999999986 2211 233333333333332445555555111 1111002234433221 1232
Q ss_pred ---CeE-EEEEecCCCccCCHHHHHHHHHHHHHc-CCcEEEec-CChhhHHHHHHHHHHc-CCCCcccccccCCHHHHHH
Q 014320 198 ---NSF-KFFMAYKGSFMINDELLIEGFKRCKSL-GALAMVHA-ENGDAVFEGQKRMIEL-GITGPEGHALSRPPLLEGE 270 (427)
Q Consensus 198 ---~~i-k~~~~~~~~~~~~~~~l~~~~~~a~~~-g~~v~~H~-e~~~~~~~~~~~l~~~-G~~~~~~~~~~~p~~~e~~ 270 (427)
..| ++.+++. ......+.+++.++.|++. |+||.+|. .+.+...+.++.+.+. |..
T Consensus 159 vkag~IGEiGld~~-~t~~q~~~f~aq~~~A~~~~glPV~iH~~r~~~a~~e~l~iL~e~~~~~---------------- 221 (365)
T 3rhg_A 159 IRAGMIGEIGVSPF-FTDGEKNSLRAAALAQNNNPYASMNIHMPGWQRRGDEVLDILLTEMGCD---------------- 221 (365)
T ss_dssp CCCCEEEEEECCTT-CCHHHHHHHHHHHHHHTTCTTCEEEEECCTTSCCHHHHHHHHTTTTCCC----------------
T ss_pred ceeEEEEEEEcCCC-CCHHHHHHHHHHHHHHHHhcCCcEEEECCCCCcCHHHHHHHHHhccCCC----------------
Confidence 235 3444431 1111235678889999999 99999997 4322222222222222 211
Q ss_pred HHHHHHHHHHhcCCCEEEEcCC-CHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCc-cc
Q 014320 271 ATTRAIRLAEFVNTPLYVVHVM-SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRAS-GH 348 (427)
Q Consensus 271 a~~~~~~~~~~~g~~~~i~H~~-~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~-~~ 348 (427)
..++.+.|+. +....+..+++.+.|..+..+..-.... +.. ... ..+. ..
T Consensus 222 ------------~~~vvi~H~~rs~~~~e~a~~~l~~G~~I~~~g~g~~~t-----f~~------~~~-----~~~d~~~ 273 (365)
T 3rhg_A 222 ------------PAKISLAHSDPSGKDIDYQCKMLDRGVWLEFDMIGLDIS-----FPK------EGA-----APSVMDT 273 (365)
T ss_dssp ------------GGGEEESCCGGGTTCHHHHHHHHHTTCEEEECCTTCCCB-----CSS------SCB-----CCCHHHH
T ss_pred ------------CCceEEecCCCCCCCHHHHHHHHhCCCEEEecCCCcccc-----ccc------ccc-----ccchHHH
Confidence 0136678997 3244677888888897665532200000 000 000 0111 12
Q ss_pred HHHHHHHHhcCC--ceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 349 NKALQAALATGI--LQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 349 ~~~l~~~l~~G~--~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
.+.+.++++.|. .+.++||. |.....+..+ | .+....+..+. ..++..+++.+++.+++|.||+|+
T Consensus 274 a~~l~~li~~g~~drilleTD~-p~l~~~~~~G---------~-~~~~~l~~~~~-~~~~~~Gis~e~i~~~~~~Np~rl 341 (365)
T 3rhg_A 274 VEAVATLIERGYGNQIVLSHDV-FLKQMWAKNG---------G-NGWGFVPNVFL-SLLAQRGIDKTIIDKLCIDNPANL 341 (365)
T ss_dssp HHHHHHHHHTTCGGGEEECCCC-CSGGGSGGGT---------S-CTTTHHHHTHH-HHHHHTTCCHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHhCCCCcEEEeCCC-CCCCCCCcCC---------C-CCchhHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHH
Confidence 356888888885 58899995 5533222111 1 22222222222 233456899999999999999985
|
| >3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB: 2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A* 3fdk_A* 3htw_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=7.1e-07 Score=84.35 Aligned_cols=267 Identities=13% Similarity=0.059 Sum_probs=134.8
Q ss_pred cccccccccccCcCCC--------CCh-hhH---HHHHHHHHcCCceEEecCcCCCC-CcHHHHHHHHHHHhccccceec
Q 014320 106 GGIDPHTHLAMEFMGS--------ETI-DDF---FSGQAAALAGGTTMHIDFVIPIN-GSLTAGFEAYEKKAKNSCMDYG 172 (427)
Q Consensus 106 G~ID~H~H~~~~~~g~--------~~~-e~~---~~~~~~~l~~GvTtv~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 172 (427)
|++.+|=|+...+.+. ... +++ ......+.+.||+++++...... .+.....+..++.+...+...|
T Consensus 32 G~t~~HEHl~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~a~~aGv~tiV~~~~~~~~r~~~~l~~la~~~g~~i~~~tG 111 (339)
T 3gtx_A 32 GATLPHEHVIFGYPGYAGDVTLGPFDHAAALASCTETARALLARGIQTVVDATPNGCGRNPAFLREVSEATGLQILCATG 111 (339)
T ss_dssp CEEEEEEEEEECCTTGGGGTTTSCCCHHHHHHHHHHHHHHHHHTTEEEEEECCCTTTTCCHHHHHHHHHHHCCEEECEEC
T ss_pred CCeeeccCeeccCcccccCCCccccchHHHHHHHHHHHHHHHHhCCCeEEecCCCccCcCHHHHHHHHHHcCCcEEEEcC
Confidence 7888888875432111 011 222 23445678899999999763211 2333333333333334455555
Q ss_pred eeccc------cCCC---hhhHHHHHHHHHH---cC-------CCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEE
Q 014320 173 FHMAI------TKWD---EVVSDEMEVMVKE---KG-------INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMV 233 (427)
Q Consensus 173 ~~~~~------~~~~---~~~~~~~~~l~~~---~g-------~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~ 233 (427)
++... ..+. ....+++.++... .| +..+++.++++.......+.+++.++.|++.|+||.+
T Consensus 112 ~hp~~~~~~~~~~~~~~~~~~~~~L~~~~~~e~~~gIg~tg~k~g~IEigld~~~~~~~q~~~f~aq~~lA~~~glPVii 191 (339)
T 3gtx_A 112 FYYEGGGATTYFKFRASLGDAESEIYEMMRTEVTEGIAGTGIRAGVIKLASSRDAITPYEQLFFRAAARVQRETGVPIIT 191 (339)
T ss_dssp CCCTTTSSCHHHHHHHHHSCHHHHHHHHHHHHHHTCSTTSSCCCSEEEEECCSSCCCHHHHHHHHHHHHHHHHHCCCEEE
T ss_pred CCccCccCCcCCcccccccCCHHHHHHHHHHHHHhcccccCcccceEEEEcCCCCCCHHHHHHHHHHHHHHHHHCCeEEE
Confidence 55411 0100 1123445443321 12 2455888887632222345688889999999999999
Q ss_pred ecCC-hhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCC-CHHHHHHHHHHhhcCCCEE
Q 014320 234 HAEN-GDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM-SMDAMEEIAKARKAGQRVI 311 (427)
Q Consensus 234 H~e~-~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~-~~~~~~~i~~~~~~G~~v~ 311 (427)
|+.. .+.. +..+.+++.|.. ..++.+.|+. +.+ .+..+++.+.|..+.
T Consensus 192 H~~~gr~a~-~~~~iL~~~~~~----------------------------~~~~vi~H~~~~~~-~e~a~~~l~~G~~i~ 241 (339)
T 3gtx_A 192 HTQEGQQGP-QQAELLTSLGAD----------------------------PARIMIGHMDGNTD-PAYHRETLRHGVSIA 241 (339)
T ss_dssp ECSTTCCHH-HHHHHHHHTTCC----------------------------GGGEEECCGGGCCC-HHHHHHHHTTTCEEE
T ss_pred eCCCCcCHH-HHHHHHHHcCCC----------------------------cccEEEEccCCCCC-HHHHHHHHHcCcEEE
Confidence 9843 2221 122222222211 1235678996 333 577778878887665
Q ss_pred EecCccceeeCcccccCCCcccCceeEEcCCCCCc-ccHHHHHHHHhcCC--ceEEecCCCCCChh-hhhcCCCCCcc-C
Q 014320 312 GEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRAS-GHNKALQAALATGI--LQLVGTDHCAFNST-QKAFGIDDFRK-I 386 (427)
Q Consensus 312 ~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~-~~~~~l~~~l~~G~--~~~lgSD~~p~~~~-~~~~~~~~~~~-~ 386 (427)
.+..-. . .+ ...... ...+.+.++++.|. .+.++||. |+.+. .... .+... .
T Consensus 242 ~~g~~t-----~------------~~---~~~p~~~~~~~~l~~li~~~~~drilleTD~-p~~~~~~P~~--~p~~~~~ 298 (339)
T 3gtx_A 242 FDRIGL-----Q------------GM---VGTPTDAERLSVLTTLLGEGYADRLLLSHDS-IWHWLGRPPA--IPEAALP 298 (339)
T ss_dssp ECCTTC-----C------------SS---TTCCCHHHHHHHHHHHHHTTCGGGEEECCCC-EEEESSSCCC--CCGGGHH
T ss_pred EccCcc-----c------------cc---cCCCchHHHHHHHHHHHHhcCCCeEEEecCC-CccccCCccc--ccccccc
Confidence 422200 0 00 000011 23356788888776 58899995 54210 0000 00000 0
Q ss_pred CCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 387 PNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 387 ~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
..|..+.. .++..+...++..+++.+++.++++.||+|+
T Consensus 299 ~~g~n~p~-~l~~~~~~~~~~~Gis~e~i~~~~~~Np~rl 337 (339)
T 3gtx_A 299 AVKDWHPL-HISDDILPDLRRRGITEEQVGQMTVGNPARL 337 (339)
T ss_dssp HHHTCSTT-HHHHTHHHHHHHTTCCHHHHHHHHTHHHHHH
T ss_pred cCCCCCch-hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 00111111 2222222344457899999999999999985
|
| >3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma synoviae} PDB: 3msr_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=7.8e-07 Score=84.60 Aligned_cols=261 Identities=16% Similarity=0.124 Sum_probs=133.7
Q ss_pred cccccccccccCcC---------CCCChhhHHHHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHH----hccccceec
Q 014320 106 GGIDPHTHLAMEFM---------GSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKK----AKNSCMDYG 172 (427)
Q Consensus 106 G~ID~H~H~~~~~~---------g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 172 (427)
|++.+|=|+...+. ...+.+......+...+.|++|++|............+.+..+. +.+..+.-+
T Consensus 21 G~tl~HEHl~~~~~~~~~~~~~~~l~d~~~~~~el~~~~~~G~~tiVd~t~~~~GRd~~~l~~is~~t~~~Gv~Iv~~TG 100 (363)
T 3ovg_A 21 GITDCHDHFIKNGGPEVEEHIDFLMLNVDASIKEFKEFIDRGGSTIVTMDPPNVGRDVLKTLEIANAVKNLGGNVIMSTG 100 (363)
T ss_dssp CEEEEEECSCBCSSHHHHHCGGGCBCCHHHHHHHHHHHHHTTEEEEEECCCTTTTCCHHHHHHHHHHHGGGTCEEEEEEE
T ss_pred CCceeccceeccCChhhccCCcccccCHHHHHHHHHHHHHhCCCeEEEeCCCccCCCHHHHHHHHHhcccCCcEEEEeCC
Confidence 78888888755321 01123334444556678999999998644333222333333333 333333344
Q ss_pred eecccc-----CC----C-hhhHHHHHHHHHHcC-----------------CCeEEEEEecCCCccCCHHHHHHHHHHHH
Q 014320 173 FHMAIT-----KW----D-EVVSDEMEVMVKEKG-----------------INSFKFFMAYKGSFMINDELLIEGFKRCK 225 (427)
Q Consensus 173 ~~~~~~-----~~----~-~~~~~~~~~l~~~~g-----------------~~~ik~~~~~~~~~~~~~~~l~~~~~~a~ 225 (427)
++.... .+ + ++..+.+.+-+ ..| +..+|+.+++........+.+++.++.|+
T Consensus 101 ~y~~~~~~~~~~~~~~~~~e~l~~~~~~ei-~~Gi~~~~~~gp~~~~t~ikaG~ikig~s~~~~t~~Q~~~f~aq~~~A~ 179 (363)
T 3ovg_A 101 FHKAKFYDKYSSWLAVVPTEEIVKMCVAEI-EEGMDEYNYNGPVVKRSKAKAGIIKAGTGYGAIDRLELKALEVAARTSI 179 (363)
T ss_dssp CCCGGGSCTTTSHHHHSCHHHHHHHHHHHH-HTCCBTTTTSSSCCCBCSCCCCEEEEEEEETBEEHHHHHHHHHHHHHHH
T ss_pred CCcCcccccCcHhhhcCCHHHHHHHHHHHH-HhcccccccccccccCCCccCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 432211 11 1 12222222222 233 23578877765333334567889999999
Q ss_pred HcCCcEEEecCC-hhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHh
Q 014320 226 SLGALAMVHAEN-GDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKAR 304 (427)
Q Consensus 226 ~~g~~v~~H~e~-~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~ 304 (427)
+.|+||.+|+.. .+.. +.++.+++.|.. ..++.++|+.....++..+++.
T Consensus 180 e~glPViiH~r~gr~a~-d~l~iL~e~g~~----------------------------~~~vvi~H~~~~~~~~~a~~~l 230 (363)
T 3ovg_A 180 LTGCPILVHTQLGTMAL-EVAKHLIGFGAN----------------------------PDKIQISHLNKNPDKYYYEKVI 230 (363)
T ss_dssp HHCCCEEEEEETTCSHH-HHHHHHHHHTCC----------------------------GGGEEEECGGGSCCHHHHHHHH
T ss_pred HhCCEEEEeCCCCCCHH-HHHHHHHhcCCC----------------------------CCcEEEEcCCCCCCHHHHHHHH
Confidence 999999999843 2222 222222222211 1246788987422234455555
Q ss_pred -hcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCC--ceEEecCCCCCChhhhhcCCC
Q 014320 305 -KAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGI--LQLVGTDHCAFNSTQKAFGID 381 (427)
Q Consensus 305 -~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~--~~~lgSD~~p~~~~~~~~~~~ 381 (427)
+.|..+..+..... .+ +| .....+.+.++++.|. .+.++||. |+.......
T Consensus 231 ~~~G~yI~f~g~~~~-----------------~~---~~--~~~ra~~l~~lv~~~p~drILleTDa-p~~~~l~~~--- 284 (363)
T 3ovg_A 231 KETGVTLCFDGPDRV-----------------KY---YP--DSLLAENIKYLVDKGLQKHITLSLDA-GRILYQRNY--- 284 (363)
T ss_dssp HHHCCEEEECCTTCT-----------------TT---CC--HHHHHHHHHHHHHTTCGGGEEECCCC-CSGGGSHHH---
T ss_pred HHCCcEEEECCeecc-----------------cc---CC--hhHHHHHHHHHHHhcCCCeEEEeCCC-CCCcCCCCC---
Confidence 67866554321100 00 01 0112356788888775 58999995 543211100
Q ss_pred CCccCCCCC--chhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 382 DFRKIPNGV--NGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 382 ~~~~~~~G~--~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
.. ..|. .+.. .++..+....+..+++.+++.++++.||+|+
T Consensus 285 --G~-~~g~~~n~p~-~l~~~~~~~a~~rGis~eei~~it~~Np~rl 327 (363)
T 3ovg_A 285 --GL-TKGKQTFGLA-YLFDRFLPLLKQVGVSKEAIFDILVNNPKRV 327 (363)
T ss_dssp --HH-HTTEECCCTH-HHHHTHHHHHHHHTCCHHHHHHHHTHHHHHH
T ss_pred --Cc-cCCCCCCCcc-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 00 0000 0111 1222222334456799999999999999985
|
| >3tn4_A Phosphotriesterase; lactonase, hydrolase; HET: KCX; 1.50A {Geobacillus kaustophilus} PDB: 3tnb_A* 3tn3_A* 3tn5_A* 3tn6_A* 3ojg_A* 3orw_A* 3f4c_A* 3f4d_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.8e-06 Score=81.89 Aligned_cols=171 Identities=14% Similarity=0.100 Sum_probs=92.2
Q ss_pred eEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHH
Q 014320 199 SFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRL 278 (427)
Q Consensus 199 ~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~ 278 (427)
.||...+...........+++.++++++.|+||.+|........+.++.+.+.|..
T Consensus 177 ~I~~~~~~~~~t~~E~k~frA~a~aa~etG~Pv~iHt~~~~~~~e~l~iL~eeG~~------------------------ 232 (360)
T 3tn4_A 177 VIKLASSKGRITEYEKMFFRAAARAQKETGAVIITHTQEGTMGPEQAAYLLEHGAD------------------------ 232 (360)
T ss_dssp EEEEECBTTBCCHHHHHHHHHHHHHHHHHCCEEEEECSTTCCHHHHHHHHHHTTCC------------------------
T ss_pred EEEEEccCCCCCHHHHHHHHHHHHHHHHhCCcEEEEcCcccCCHHHHHHHHHcCCC------------------------
Confidence 46665444322222345689999999999999999985432222223334444431
Q ss_pred HHhcCCCEEEEcC-CCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHh
Q 014320 279 AEFVNTPLYVVHV-MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALA 357 (427)
Q Consensus 279 ~~~~g~~~~i~H~-~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~ 357 (427)
.-++.+.|+ .+.+ .+..+++.+.|..+..+..- .. .+...|+ .....+.+.++++
T Consensus 233 ----~~~vvi~H~~~~~d-~~~~~~~l~~G~yl~fD~iG---------~~--------~~~~~p~--d~~r~~~l~~lv~ 288 (360)
T 3tn4_A 233 ----PKKIVIGHMCDNTD-PDYHRKTLAYGVYIAFDRFG---------IQ--------GMVGAPT--DEERVRTLLALLR 288 (360)
T ss_dssp ----GGGEEECCGGGCCC-HHHHHHHHTTTCEEEECCTT---------CC--------CSTTCCC--HHHHHHHHHHHHH
T ss_pred ----CCceEEEcCCCCCC-HHHHHHHHHcCCEEEEcccc---------cc--------cccCCCC--hHHHHHHHHHHHH
Confidence 125678895 3433 46677888888766543221 00 0000111 1122356778888
Q ss_pred cCC--ceEEecCCC------CCChhhhhcCCCCCccCCCCCchh-hHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 358 TGI--LQLVGTDHC------AFNSTQKAFGIDDFRKIPNGVNGI-EERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 358 ~G~--~~~lgSD~~------p~~~~~~~~~~~~~~~~~~G~~~~-e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
.|- .+.|++|-. |+.......+. ...+|..-+ ...+|.+ ++.++|.+++-++++.||+|+
T Consensus 289 ~g~~drILLstDa~~~~~~~py~~p~p~r~~----~~~~~y~~i~~~~ip~L-----~~~Gvs~e~I~~i~~~NP~rl 357 (360)
T 3tn4_A 289 DGYEKQIMLSHDTVNVWLGRPFTLPEPFAEM----MKNWHVEHLFVNIIPAL-----KNEGIRDEVLEQMFIGNPAAL 357 (360)
T ss_dssp TTCGGGEEECCCCEEEESSSCCCCCHHHHHH----TTTCSTTHHHHTHHHHH-----HHTTCCHHHHHHHHTHHHHHH
T ss_pred hcCcceEEEecCCCcccccCCCCCccccccc----CCCCCchhHHHHHHHHH-----HHcCCCHHHHHHHHHHhHHHH
Confidence 875 589999941 33211110000 001122111 1122322 235799999999999999985
|
| >3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} SCOP: c.1.9.0 | Back alignment and structure |
|---|
Probab=98.51 E-value=1.1e-06 Score=79.43 Aligned_cols=230 Identities=16% Similarity=0.123 Sum_probs=124.2
Q ss_pred ccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceeccccCCChhhHH
Q 014320 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSD 186 (427)
Q Consensus 107 ~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (427)
+||+|+|+... . +.......+...||..+.- + .........+ .+.+..+..+..+|+|........+.++
T Consensus 3 liDtH~HL~~~----~---d~~~vl~~a~~~gV~~i~v-~-~~~~~~~~~~-~la~~~~~v~~~~GiHP~~~~~~~~~l~ 72 (254)
T 3gg7_A 3 LIDFHVHLDLY----P---DPVAVARACEERQLTVLSV-T-TTPAAWRGTL-ALAAGRPHVWTALGFHPEVVSERAADLP 72 (254)
T ss_dssp CEEEEECGGGS----S---SHHHHHHHHHHTTCEEEEC-C-SSGGGHHHHH-GGGTTCTTEEECBCCCGGGTTTTGGGTH
T ss_pred eEEEeeCCCCC----C---CHHHHHHHHHHCCCcEEEe-c-CCHHHHHHHH-HHHHhCCCeEEEEeeCcccccccHHHHH
Confidence 89999999753 1 3333356677889987662 2 1111222222 1111112334445555433222234456
Q ss_pred HHHHHHHHcCCCeEE-EEEecCCCc----cCCHHHHHHHHHHHHHcCCcEE-EecCChhhHHHHHHHHHHcCCCCccccc
Q 014320 187 EMEVMVKEKGINSFK-FFMAYKGSF----MINDELLIEGFKRCKSLGALAM-VHAENGDAVFEGQKRMIELGITGPEGHA 260 (427)
Q Consensus 187 ~~~~l~~~~g~~~ik-~~~~~~~~~----~~~~~~l~~~~~~a~~~g~~v~-~H~e~~~~~~~~~~~l~~~G~~~~~~~~ 260 (427)
.+.+++ . .+..|. +.+++.... ....+.+++.++.|+++++||. +|+.+.. ...
T Consensus 73 ~l~~~~-~-~~vaIGEiGLD~~~~~~~~~~~Q~~~F~~ql~lA~e~~lPviSiH~r~a~--~~~---------------- 132 (254)
T 3gg7_A 73 WFDRYL-P-ETRFVGEVGLDGSPSLRGTWTQQFAVFQHILRRCEDHGGRILSIHSRRAE--SEV---------------- 132 (254)
T ss_dssp HHHHHG-G-GCSEEEEEECCCCGGGGGGHHHHHHHHHHHHHHHHHTTCEEEEEECTTCH--HHH----------------
T ss_pred HHHHHh-h-hccEEEEEecCCCcccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEcCCcH--HHH----------------
Confidence 666665 2 344553 444543211 1234568899999999999998 9985421 111
Q ss_pred ccCCHHHHHHHHHHHHHHHHhcCCC-EEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEE
Q 014320 261 LSRPPLLEGEATTRAIRLAEFVNTP-LYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVM 339 (427)
Q Consensus 261 ~~~p~~~e~~a~~~~~~~~~~~g~~-~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~ 339 (427)
+++.++.+.+ ..+.|+.+.. .+.++++.+.|..+.. .+. +
T Consensus 133 ---------------~~il~~~~~~~~~v~H~fsG~-~e~a~~~l~~G~yis~--~g~-~-------------------- 173 (254)
T 3gg7_A 133 ---------------LNCLEANPRSGTPILHWYSGS-VTELRRAISLGCWFSV--GPT-M-------------------- 173 (254)
T ss_dssp ---------------HHHHHHCGGGEEEEEETCCSC-HHHHHHHHHTTCEEEE--CHH-H--------------------
T ss_pred ---------------HHHHHHcCCCCcEEEEeCCCC-HHHHHHHHcCCcEEEE--Ccc-c--------------------
Confidence 1222222111 2266886654 4667777777865543 210 0
Q ss_pred cCCCCCcccHHHHHHHHhcC--CceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHH
Q 014320 340 SPPIRASGHNKALQAALATG--ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVR 417 (427)
Q Consensus 340 ~pplr~~~~~~~l~~~l~~G--~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~ 417 (427)
.+. +.+++.++.- ..+.+.||. |+.+.. |-.+....++..+..+.+-.+++.+++.+
T Consensus 174 ---~~~----~~~~~~v~~ip~drlLlETD~-P~~~~r-------------g~~n~P~~v~~v~~~iA~~~g~~~ee~~~ 232 (254)
T 3gg7_A 174 ---VRT----QKGAALIRSMPRDRVLTETDG-PFLELD-------------GQAALPWDVKSVVEGLSKIWQIPASEVER 232 (254)
T ss_dssp ---HTS----HHHHHHHHHSCGGGEEECCCT-TTSEET-------------TEECCGGGHHHHHHHHHHHHTSCHHHHHH
T ss_pred ---Cch----HHHHHHHHHcCCCeEEEeCCC-CccccC-------------CCCCCHHHHHHHHHHHHHHhCcCHHHHHH
Confidence 011 1234444432 358999995 765321 22222334555554444556799999999
Q ss_pred HHchhhhcC
Q 014320 418 LTSTEWGRL 426 (427)
Q Consensus 418 ~~t~npA~~ 426 (427)
.++.|+.++
T Consensus 233 ~~~~N~~~l 241 (254)
T 3gg7_A 233 IVKENVSRL 241 (254)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999764
|
| >1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center for structural genomics, nysgxrc; 1.90A {Escherichia coli} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=98.51 E-value=5.2e-06 Score=75.70 Aligned_cols=123 Identities=16% Similarity=0.155 Sum_probs=62.6
Q ss_pred ccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccc---cceeceeccccCCChh
Q 014320 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNS---CMDYGFHMAITKWDEV 183 (427)
Q Consensus 107 ~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 183 (427)
+||+|+|+....... ...+.....+.+...||+.++..... ....+...+...+. ...++++..... ...
T Consensus 3 ~iD~H~Hl~~~~~~~-~~~~~~~~l~~~~~~Gv~~~v~~~~~-----~~~~~~~~~~~~~~p~~~~~~g~hP~~~~-~~~ 75 (265)
T 1yix_A 3 LVDSHCHLDGLDYES-LHKDVDDVLAKAAARDVKFCLAVATT-----LPSYLHMRDLVGERDNVVFSCGVHPLNQN-DPY 75 (265)
T ss_dssp EEEEEECGGGSCTTT-TCSSHHHHHHHHHHTTEEEEEECCSS-----HHHHHHHHHHHCSCTTEEEEECCCTTCCS-SCC
T ss_pred EEEEeeCCCchhhcc-cccCHHHHHHHHHHCCCCEEEEeCCC-----HHHHHHHHHHHHHCCCeEEEEEeCCCccc-ccc
Confidence 799999997652110 01223333566778999998865321 12222222332221 111222211111 001
Q ss_pred hHHHHHHHHHHcCCCeEEE-EEecCC---CccCCHHHHHHHHHHHHHcCCcEEEecC
Q 014320 184 VSDEMEVMVKEKGINSFKF-FMAYKG---SFMINDELLIEGFKRCKSLGALAMVHAE 236 (427)
Q Consensus 184 ~~~~~~~l~~~~g~~~ik~-~~~~~~---~~~~~~~~l~~~~~~a~~~g~~v~~H~e 236 (427)
..++++++++...+..++. .+++.. ......+.++..++.|+++|++|.+|+.
T Consensus 76 ~~~~l~~~~~~~~~~~iGe~Gl~~~~~~~~~~~q~~~~~~~~~~a~~~~~pv~iH~~ 132 (265)
T 1yix_A 76 DVEDLRRLAAEEGVVALGETGLDYYYTPETKVRQQESFIHHIQIGRELNKPVIVHTR 132 (265)
T ss_dssp CHHHHHHHHTSTTEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred hHHHHHHHhccCCeEEEEccccCCCcCCCChHHHHHHHHHHHHHHHHhCCCEEEEec
Confidence 2566777663222223322 233321 1122356788999999999999999974
|
| >4i6k_A Amidohydrolase family protein; enzyme function initiative, isomerase, structural; HET: CIT; 2.28A {Acinetobacter baumannii} | Back alignment and structure |
|---|
Probab=98.45 E-value=4.5e-06 Score=77.53 Aligned_cols=247 Identities=10% Similarity=-0.037 Sum_probs=125.0
Q ss_pred EeccccccccccccCcCC------CCC--hhhHHHHHHHHHcCCceEEecCcCCCCC-cHHHHHHHHHHHhccccceece
Q 014320 103 VMPGGIDPHTHLAMEFMG------SET--IDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGF 173 (427)
Q Consensus 103 v~PG~ID~H~H~~~~~~g------~~~--~e~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 173 (427)
+=|++||+|+|+...... ... ..+...-...+-..||..++-....... .....++..++ .+.....+.
T Consensus 23 ~p~~~iDtH~Hl~~~~~p~~~~~~~~p~~~~~~e~~l~~~~~~GV~~~V~v~~~~~~~~n~~~~~~~~~-~p~r~~g~~- 100 (294)
T 4i6k_A 23 MKMNCIDTHAHVFSTQDHSIETARYAPDYEATVQSFISHLDEHNFTHGVLVQPSFLGTNNQAMLNAIQQ-YPDRLKGIA- 100 (294)
T ss_dssp --CCSEEEEECCBCTTSCCCTTCSCCCCSCBCHHHHHHHHHHTTCCEEEEECCGGGTTCCHHHHHHHHH-STTTEEEEE-
T ss_pred CCCCceEeeeEeecCCCCCCCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEecCcccccchHHHHHHHHH-CCCeEEEEE-
Confidence 445789999999864211 000 1233333556677899887754221111 11112222222 121111111
Q ss_pred eccccCCChhhHHHHHHHHHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCC
Q 014320 174 HMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGI 253 (427)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~ 253 (427)
++.. +...++++++. +.|+.++++.....+.....++.++..++.++++|+++.+|+....
T Consensus 101 --~v~P--~~~~~eL~~l~-~~gv~Gi~l~~~~~~~~~~~~~~~~~~~~~a~~~glpv~iH~~~~~-------------- 161 (294)
T 4i6k_A 101 --VVQH--TTTFNELVNLK-AQGIVGVRLNLFGLNLPALNTPDWQKFLRNVESLNWQVELHAPPKY-------------- 161 (294)
T ss_dssp --CCCT--TCCHHHHHHHH-TTTEEEEEEECTTSCCCCSSSHHHHHHHHHHHHTTCEEEEECCHHH--------------
T ss_pred --EeCC--cccHHHHHHHH-HCCCcEEEeccCCCCCCCcccHHHHHHHHHHHHcCCEEEEeeCcch--------------
Confidence 1111 11235566665 5688888865432222234668999999999999999999985421
Q ss_pred CCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCH--------HHHHHHHHHhhcCCCEEEecCccceeeCccc
Q 014320 254 TGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM--------DAMEEIAKARKAGQRVIGEPVVSGLVLDDSW 325 (427)
Q Consensus 254 ~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~--------~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~ 325 (427)
+....+++++..+++.+.|+... ...+.+..+.+. -++++.++-.+.+.. .
T Consensus 162 ------------------l~~~~~~l~~~p~~~Vi~H~g~p~~~~g~~~~~~~~~~~l~~~-~nv~~k~Sg~~~~~~-~- 220 (294)
T 4i6k_A 162 ------------------LVQLLPQLNEYSFDVVIDHFGRVDPVKGIEDPDYQKFLSLLNV-KQHWIKVSGFYRLGA-T- 220 (294)
T ss_dssp ------------------HHHHHHHHTTSSSCEEESGGGCCCTTTCTTCHHHHHHHHHCCT-TTEEEECCCGGGSSS-T-
T ss_pred ------------------HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhC-CCEEEEecccccccc-c-
Confidence 11223444455577888898652 123333333322 246665542111000 0
Q ss_pred ccCCCcccCceeEEcCCCCCcccHHHHHHHHhc-C-CceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHH
Q 014320 326 LWHSDFVTAAKYVMSPPIRASGHNKALQAALAT-G-ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDT 403 (427)
Q Consensus 326 ~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~-G-~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~ 403 (427)
..|. ..+...+.+.++. | ..+.+|||+ |+.... +.+... ..+ .
T Consensus 221 --------------~~~~--~~~~~~l~~~~~~~g~dRll~gSD~-P~~~~~-------------~~~~y~----~~~-~ 265 (294)
T 4i6k_A 221 --------------PSNI--NIAQQAYNIFKEKGFLHKLIWGSDW-PHTQHE-------------SLITYE----DAI-K 265 (294)
T ss_dssp --------------THHH--HHHHHHHHHHHHHTCGGGEECCCCB-TCTTCT-------------TTCCHH----HHH-H
T ss_pred --------------CCCc--hhhHHHHHHHHHHhCcccEEEeCCC-CCCCCc-------------CCCCHH----HHH-H
Confidence 0000 1123445555542 2 368999996 775421 111111 112 1
Q ss_pred HHhcCCCCHHHHHHHHchhhhcC
Q 014320 404 MVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 404 ~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
.+.+-.++.++.-++...|++|+
T Consensus 266 ~l~~~~~~~~~~~~i~~~NA~rl 288 (294)
T 4i6k_A 266 AFKQIVFDKHEQCLILNQNPTEL 288 (294)
T ss_dssp HHHHHCCCHHHHHHHHTHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHCHHHH
Confidence 12222489999999999999875
|
| >2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237, structural GENO PSI, protein structure initiative; 2.20A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.39 E-value=9.9e-06 Score=73.79 Aligned_cols=125 Identities=16% Similarity=0.092 Sum_probs=63.6
Q ss_pred ccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceeccc-cCCChhhH
Q 014320 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAI-TKWDEVVS 185 (427)
Q Consensus 107 ~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 185 (427)
+||+|+|+..... ..+.......+...||+.++...... ...+.+....+..+.....++++... ....++..
T Consensus 2 ~iD~H~Hl~~~~~----~~~~~~~l~~~~~~Gv~~~v~~~~~~--~~~~~~~~~~~~~p~~~~~~g~~P~~~~~~~~~~~ 75 (265)
T 2gzx_A 2 LIDTHVHLNDEQY----DDDLSEVITRAREAGVDRMFVVGFNK--STIERAMKLIDEYDFLYGIIGWHPVDAIDFTEEHL 75 (265)
T ss_dssp CEEEEECTTSGGG----TTTHHHHHHHHHHTTCCEEEEEECSH--HHHHHHHHHHHHCTTEEEEECCCGGGGGGCCHHHH
T ss_pred eEEEeeCCCCccc----ccCHHHHHHHHHHcCCCEEEEeCCCH--HHHHHHHHHHHhCCCEEEEEEeccCccccCCHHHH
Confidence 7999999876511 11233335567778999887654221 11111222222222211112222111 11122345
Q ss_pred HHHHHHHHHcCCCeEEEE-EecCC---CccCCHHHHHHHHHHHHHcCCcEEEecCC
Q 014320 186 DEMEVMVKEKGINSFKFF-MAYKG---SFMINDELLIEGFKRCKSLGALAMVHAEN 237 (427)
Q Consensus 186 ~~~~~l~~~~g~~~ik~~-~~~~~---~~~~~~~~l~~~~~~a~~~g~~v~~H~e~ 237 (427)
++++++++..++.+++.. +++.. ......+.++..++.|.++|+++.+|+..
T Consensus 76 ~~l~~~~~~~~~~~iGe~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~~~pv~iH~~~ 131 (265)
T 2gzx_A 76 EWIESLAQHPKVIGIGEMGLDYHWDKSPADVQKEVFRKQIALAKRLKLPIIIHNRE 131 (265)
T ss_dssp HHHHHHTTSTTEEEEEEEEEECSCCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEES
T ss_pred HHHHHHhcCCCEEEEEeccCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence 666666532233344322 22221 11234567899999999999999999743
|
| >3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.1e-05 Score=75.35 Aligned_cols=256 Identities=13% Similarity=0.012 Sum_probs=135.6
Q ss_pred cccccccccccCcC-CC-----CChhhHHHHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhc-----cccceecee
Q 014320 106 GGIDPHTHLAMEFM-GS-----ETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK-----NSCMDYGFH 174 (427)
Q Consensus 106 G~ID~H~H~~~~~~-g~-----~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 174 (427)
-|||+|+|+..+.+ |. ...++.......+...||..++..+... ......++..+ .-+ +.+..+|+|
T Consensus 27 ~~iDtH~HL~~~~f~g~y~gk~~h~~d~~~vl~rA~~aGV~~ii~~g~~~-~~~~~~~~La~-~~~~~~~~~v~~~~GiH 104 (325)
T 3ipw_A 27 QFIDIGANLTDDNYFGNYHGKHYHEEDIDVVLQRAERNGLSHIIITSGCL-NDFKKAIEIIN-KYQNLTNIKLVTTIGVH 104 (325)
T ss_dssp CEEEEEECTTSGGGGTEETTEECSCCCHHHHHHHHHHTTEEEEEECCCSH-HHHHHHHHHHH-HHGGGCSSEEEEEECCC
T ss_pred CeEEEEECCCchHhccccccccccccCHHHHHHHHHHcCCcEEEEccCCH-HHHHHHHHHHH-HCCCcccceEEEEEEEC
Confidence 59999999987632 00 0123444456778889999998754321 12222222222 223 344455665
Q ss_pred ccccC-CChh-hHHHHHHHHHHc--CCCeEE-EEEecCCCccC----CHHHHHHHHHHHHH-cCCcEEEecCChhhHHHH
Q 014320 175 MAITK-WDEV-VSDEMEVMVKEK--GINSFK-FFMAYKGSFMI----NDELLIEGFKRCKS-LGALAMVHAENGDAVFEG 244 (427)
Q Consensus 175 ~~~~~-~~~~-~~~~~~~l~~~~--g~~~ik-~~~~~~~~~~~----~~~~l~~~~~~a~~-~g~~v~~H~e~~~~~~~~ 244 (427)
..... ..++ .++++++++... .+..|. +.+++...... ..+.+++.++.|++ +++||.+|+.+. ....
T Consensus 105 P~~~~~~~~~~~l~~L~~l~~~~~~~vvAIGEiGLD~~~~~~~~~~~Q~~~F~~ql~lA~e~~~lPviiH~r~A--~~d~ 182 (325)
T 3ipw_A 105 PTRTNELKQEGYLDELLLLCEKNIDKVVAIGEIGLDYERLQFSDKETQLSGYRTLSILHQKYPYLPFFFHCRKS--WSDL 182 (325)
T ss_dssp GGGGGGGGSTTHHHHHHHHHHHTGGGEEEEEEEEEETTCCSSSCHHHHHHHHHHTHHHHHHCTTCCEEEEEESC--HHHH
T ss_pred cchhhcCCchHHHHHHHHHHhcCCCCEEEEEeeecCCCcCCCCCHHHHHHHHHHHHHHHHHhhCCeEEEEeCch--HHHH
Confidence 43222 2222 567788877432 445553 44565321111 24578889999999 999999998432 1112
Q ss_pred HHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcc
Q 014320 245 QKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDS 324 (427)
Q Consensus 245 ~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~ 324 (427)
.+.+.+.+. ...+. +.|+.+.. .+.++++.+.|..+....+ .
T Consensus 183 l~iL~~~~~----------------------------~~~~g-ViH~FsGs-~e~a~~~l~lG~yis~~G~---~----- 224 (325)
T 3ipw_A 183 CQLNKELGY----------------------------NGCKG-VVHCFDGT-EEEMNQILNEGWDIGVTGN---S----- 224 (325)
T ss_dssp HHHHHHTTC----------------------------TTSCE-EECSCCCC-HHHHHHHHHTTCEEEECSG---G-----
T ss_pred HHHHHhcCC----------------------------CCCcE-EEEECCCC-HHHHHHHHhcCcEEeeCcc---c-----
Confidence 222222111 01223 66987655 4777888888865554221 0
Q ss_pred cccCCCcccCceeEEcCCCCCcccHHHHHHHHhc--CCceEEecCCCCCChhhhh-----cCCCCCcc---------CCC
Q 014320 325 WLWHSDFVTAAKYVMSPPIRASGHNKALQAALAT--GILQLVGTDHCAFNSTQKA-----FGIDDFRK---------IPN 388 (427)
Q Consensus 325 ~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~--G~~~~lgSD~~p~~~~~~~-----~~~~~~~~---------~~~ 388 (427)
++.. +.+ +.++. -..+.+-||. |+...... .-..++.. ...
T Consensus 225 ------------------~k~~---~~~-~~v~~iPldrlLlETDa-P~l~~~~~~~~~~~~~~p~p~r~~~k~~~~~~~ 281 (325)
T 3ipw_A 225 ------------------LQSI---ELL-NVMKQIPIERLHIETDC-PYCGIKKTSAGFKYLKEKDFGVKVEKYQRNKYV 281 (325)
T ss_dssp ------------------GSSH---HHH-HHHTTSCGGGEEECCCT-TSCCCCTTSGGGGGCSSCCCCBCGGGCCTTSCB
T ss_pred ------------------cCcH---HHH-HHHHhCCcccEEEeCCC-ccccccccccchhcccccCcccccccccccccc
Confidence 1111 112 33332 2357899994 66421000 00001100 001
Q ss_pred CCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 389 GVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 389 G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
|-.+-...++..+..+.+-.+++++++.+.++.|.-++
T Consensus 282 g~rNeP~~v~~v~~~iA~l~g~~~eeva~~t~~Na~~l 319 (325)
T 3ipw_A 282 QRRNEPSNIIDIAIIMSSIKHISLFEFVNKVYSNSMNM 319 (325)
T ss_dssp TTCCCGGGHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHHHHhhCcCHHHHHHHHHHHHHHH
Confidence 33444556666665555656799999999999998663
|
| >3cjp_A Predicted amidohydrolase, dihydroorotase family; structural genomics, protein structure initiative; 1.85A {Clostridium acetobutylicum atcc 824} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.6e-05 Score=71.32 Aligned_cols=159 Identities=14% Similarity=0.063 Sum_probs=90.3
Q ss_pred hhhHHHHHHHHHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHc-CCcEEEecCChhhHHHHHHHHHHcCCCCccccc
Q 014320 182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL-GALAMVHAENGDAVFEGQKRMIELGITGPEGHA 260 (427)
Q Consensus 182 ~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~-g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~ 260 (427)
++..++++++++..|+.+++.+.-.. . ..+.+..+++.|.++ |++|.+|+......
T Consensus 101 ~~~~~el~~~~~~~g~~gi~~~g~~~---~-~~~~~~~~~~~a~~~~~lpv~iH~~~~~~~------------------- 157 (272)
T 3cjp_A 101 NDTNSYIEENIVNNKLVGIGELTPAS---G-QIKSLKPIFKYSMDSGSLPIWIHAFNPLVL------------------- 157 (272)
T ss_dssp HHHHHHHHHHTTTTTCSEEEEECCCT---T-CGGGGHHHHHHHHHTTCCCEEECCSTTCCH-------------------
T ss_pred HHHHHHHHHHHHhcCceEEEecCCCC---C-ccHHHHHHHHHHHhccCCcEEEeCCCCCcc-------------------
Confidence 34566677765456888988653221 2 567899999999999 99999998642110
Q ss_pred ccCCHHHHHHHHHHHHHHHHhc-CCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEE
Q 014320 261 LSRPPLLEGEATTRAIRLAEFV-NTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVM 339 (427)
Q Consensus 261 ~~~p~~~e~~a~~~~~~~~~~~-g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~ 339 (427)
.+.....++.++. +.++.++|.......+.++.+++. -+++.+++...
T Consensus 158 ---------~~~~~~~~~l~~~p~l~iv~~H~G~~~~~~~~~~~~~~-~~~y~~~s~~~--------------------- 206 (272)
T 3cjp_A 158 ---------QDIKEIAELCKAFPKVPVILGHMGGSNWMTAVELAKEI-QNLYLDTSAYF--------------------- 206 (272)
T ss_dssp ---------HHHHHHHHHHHHSTTSCEEEGGGGGGGHHHHHHHHHHC-TTEEEECTTCS---------------------
T ss_pred ---------ccHHHHHHHHHHCCCceEEEECCCCccHHHHHHHHHhC-CCEEEEecccc---------------------
Confidence 1112222333333 356778887654322344444432 23554443210
Q ss_pred cCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHH
Q 014320 340 SPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLT 419 (427)
Q Consensus 340 ~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~ 419 (427)
. ....+.+.+.+ +..+.+|||+ |+..... .. ..+...+++.++.-+++
T Consensus 207 ----~-~~~~~~~~~~~--~dril~gSD~-P~~~~~~-------------------~~-----~~~~~~~l~~~~~~~i~ 254 (272)
T 3cjp_A 207 ----S-TFVLKIVINEL--PLKCIFGTDM-PFGDLQL-------------------SI-----EAIKKMSNDSYVANAVL 254 (272)
T ss_dssp ----C-HHHHHHHHHHS--TTTEECCCCT-TSSCHHH-------------------HH-----HHHHHHCSSHHHHHHHH
T ss_pred ----c-HHHHHHHHHhC--CCeEEEeCCC-CCCChHH-------------------HH-----HHHHhcCCCHHHHHHHH
Confidence 0 01112233333 4789999996 7642111 01 11122469999999999
Q ss_pred chhhhcC
Q 014320 420 STEWGRL 426 (427)
Q Consensus 420 t~npA~~ 426 (427)
..|++|+
T Consensus 255 ~~Na~rl 261 (272)
T 3cjp_A 255 GDNISRL 261 (272)
T ss_dssp THHHHHH
T ss_pred HHHHHHH
Confidence 9999874
|
| >1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=98.26 E-value=5.3e-06 Score=75.93 Aligned_cols=238 Identities=15% Similarity=0.116 Sum_probs=119.5
Q ss_pred cccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhcc---ccceeceeccc-cCCC
Q 014320 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKN---SCMDYGFHMAI-TKWD 181 (427)
Q Consensus 106 G~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~ 181 (427)
-++|.|+|+....+ ..+.......+-+.||+.++..... ....+...+...+ ....++++... ....
T Consensus 12 ~~~~~~~hl~~~~~----~~~~~~~l~~~~~~GV~~~v~~~~~-----~~~~~~~~~l~~~~p~i~~~~G~hP~~~~~~~ 82 (268)
T 1j6o_A 12 HMVDTHAHLHFHQF----DDDRNAVISSFEENNIEFVVNVGVN-----LEDSKKSLDLSKTSDRIFCSVGVHPHDAKEVP 82 (268)
T ss_dssp CEEEEEECTTSGGG----TTTHHHHHHTTTTTTEEEEEEECSS-----HHHHHHHHHHHTTCTTEEEEECCCGGGGGGCC
T ss_pred cccccccCCCChhh----ccCHHHHHHHHHHcCCCEEEEeCCC-----HHHHHHHHHHHHHCCCEEEEEeeccccccccC
Confidence 36899999976521 1233333556778999988875421 1122222222222 12222333211 1112
Q ss_pred hhhHHHHHHHHHHcCCCeEEE-EEecCC---CccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcc
Q 014320 182 EVVSDEMEVMVKEKGINSFKF-FMAYKG---SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPE 257 (427)
Q Consensus 182 ~~~~~~~~~l~~~~g~~~ik~-~~~~~~---~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~ 257 (427)
++.+++++++++...+..++. .+++.. ......+.++..++.|.++|++|.+|+.+. ....
T Consensus 83 ~~~~~~l~~~~~~~~~~~iGe~Gld~~~~~~~~~~q~~~f~~~~~~a~~~~lPv~iH~~~~--~~~~------------- 147 (268)
T 1j6o_A 83 EDFIEHLEKFAKDEKVVAIGETGLDFFRNISPAEVQKRVFVEQIELAGKLNLPLVVHIRDA--YSEA------------- 147 (268)
T ss_dssp TTHHHHHHHHTTSTTEEEEEEEEEETTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESC--HHHH-------------
T ss_pred HHHHHHHHHHhccCCEEEEEccccCCcccCCChHHHHHHHHHHHHHHHHhCCCEEEEeCch--HHHH-------------
Confidence 344666666653222333332 234321 112345678999999999999999997432 1111
Q ss_pred cccccCCHHHHHHHHHHHHHHHHhc---CCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccC
Q 014320 258 GHALSRPPLLEGEATTRAIRLAEFV---NTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTA 334 (427)
Q Consensus 258 ~~~~~~p~~~e~~a~~~~~~~~~~~---g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~ 334 (427)
+++.++. ..++.+ |+.... .+.++.+.+.| ++.+++....
T Consensus 148 ------------------~~il~~~p~~~~~~I~-H~~~g~-~~~~~~~~~~g--~y~~~sg~~~--------------- 190 (268)
T 1j6o_A 148 ------------------YEILRTESLPEKRGVI-HAFSSD-YEWAKKFIDLG--FLLGIGGPVT--------------- 190 (268)
T ss_dssp ------------------HHHHHHSCCCSSCEEE-TTCCSC-HHHHHHHHHHT--EEEEECGGGG---------------
T ss_pred ------------------HHHHHhcCCCCCCEEE-EcCCCC-HHHHHHHHHCC--CeEEeccccc---------------
Confidence 1222222 245655 975533 34555555555 4443332100
Q ss_pred ceeEEcCCCCCcccHHHHHHHHhc-C-CceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCH
Q 014320 335 AKYVMSPPIRASGHNKALQAALAT-G-ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISV 412 (427)
Q Consensus 335 ~~~~~~pplr~~~~~~~l~~~l~~-G-~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l 412 (427)
.+. .+.+.++++. + ..+.++||. |+...... .|-.+....++.....+.+..+++.
T Consensus 191 --------~~~---~~~l~~~i~~~~~driL~eTD~-P~~~~~~~----------~g~~n~p~~~~~~~~~la~~~~~~~ 248 (268)
T 1j6o_A 191 --------YPK---NEALREVVKRVGLEYIVLETDC-PFLPPQPF----------RGKRNEPKYLKYVVETISQVLGVPE 248 (268)
T ss_dssp --------CTT---CHHHHHHHHHHCGGGEEECCCB-TSCCCGGG----------TTSCCCGGGHHHHHHHHHHHHTSCH
T ss_pred --------ccc---hHHHHHHHHhCChhhEEEecCC-CCCCCccc----------CCCCCchHHHHHHHHHHHHHhCcCH
Confidence 000 0223444433 2 478999996 66432211 1111111233333323323247999
Q ss_pred HHHHHHHchhhhcC
Q 014320 413 TDYVRLTSTEWGRL 426 (427)
Q Consensus 413 ~~~v~~~t~npA~~ 426 (427)
+++.+.++.|++|+
T Consensus 249 e~~~~i~~~Na~rl 262 (268)
T 1j6o_A 249 AKVDEATTENARRI 262 (268)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999874
|
| >2ffi_A 2-pyrone-4,6-dicarboxylic acid hydrolase, putativ; TIM-barrel protein., structural genomics, PSI, protein struc initiative; 2.61A {Pseudomonas putida} SCOP: c.1.9.15 | Back alignment and structure |
|---|
Probab=98.26 E-value=8.9e-06 Score=75.15 Aligned_cols=125 Identities=10% Similarity=0.038 Sum_probs=68.7
Q ss_pred cccccccccccCcC----C--C--CChhhHHHHHHHHHcCCceEEecCcCC-CCCcHHHHHHHHHHHhccccceeceecc
Q 014320 106 GGIDPHTHLAMEFM----G--S--ETIDDFFSGQAAALAGGTTMHIDFVIP-INGSLTAGFEAYEKKAKNSCMDYGFHMA 176 (427)
Q Consensus 106 G~ID~H~H~~~~~~----g--~--~~~e~~~~~~~~~l~~GvTtv~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (427)
++||+|+|+..+.. + . ....+...-.+.+-..||+..+-.... ........++..++ .+.....+ .+
T Consensus 13 ~iID~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~l~~m~~~GV~~~v~~~~~~~~~~n~~~~~~~~~-~p~r~~~~---~~ 88 (288)
T 2ffi_A 13 TAIDSHAHVFSRGLNLASQRRYAPNYDAPLGDYLGQLRAHGFSHGVLVQPSFLGTDNRYLLSALQT-VPGQLRGV---VM 88 (288)
T ss_dssp CCEEBCCCCBCHHHHHHTTCCSSCCSCBCHHHHHHHHHHTSCCEECCBCCGGGTTCCHHHHHHHHH-STTTBCCB---BC
T ss_pred CceeecccccCCCCCCCCcccCCCCCCCCHHHHHHHHHHhCCCeEEEECCccccccHHHHHHHHHH-CCCCEEEE---EE
Confidence 79999999875410 0 0 001122222455667899977644311 01111222222222 22111111 11
Q ss_pred ccCCChhhHHHHHHHHHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCC
Q 014320 177 ITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN 237 (427)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~ 237 (427)
+.. ....++++++. ..|+.++++...+.+....+++.+..+++.|.++|++|.+|+..
T Consensus 89 v~p--~~~~~el~~~~-~~g~~Gi~~~~~~~~~~~~~~~~~~~~~~~a~~~~lpv~iH~~~ 146 (288)
T 2ffi_A 89 LER--DVEQATLAEMA-RLGVRGVRLNLMGQDMPDLTGAQWRPLLERIGEQGWHVELHRQV 146 (288)
T ss_dssp CCS--SCCHHHHHHHH-TTTCCEEECCCSSSCCCCTTSTTTHHHHHHHHHHTCEEEECSCT
T ss_pred eCC--CCCHHHHHHHH-HCCCeEEEEecccCCCCCcccHHHHHHHHHHHHCCCeEEEeech
Confidence 111 11135677776 57899998776554323456678999999999999999999854
|
| >3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A {Arthrobacter aurescens} SCOP: c.1.9.0 | Back alignment and structure |
|---|
Probab=98.26 E-value=3.5e-05 Score=72.73 Aligned_cols=152 Identities=16% Similarity=0.069 Sum_probs=88.5
Q ss_pred cCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-CChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHH
Q 014320 195 KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATT 273 (427)
Q Consensus 195 ~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~ 273 (427)
.++.++.+.-+. ...+.+.+.++++.|++.|+++++|+ |... .. .+.
T Consensus 163 ~~vvG~dL~g~E---~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~-~~----------------------------~i~ 210 (343)
T 3rys_A 163 APIAGIGLDSAE---VGNPPSKFERLYQRAAEAGLRRIAHAGEEGP-AS----------------------------YIT 210 (343)
T ss_dssp CCCCEEEEESCC---TTCCGGGGHHHHHHHHHTTCEEEEEESSSSC-HH----------------------------HHH
T ss_pred CCEEEEecCCcc---cCCCHHHHHHHHHHHHHCCCeEEEeeCCCCC-HH----------------------------HHH
Confidence 456666665432 23466789999999999999999998 4431 11 111
Q ss_pred HHHHHHHhcCCCEEEEcCCCHHH-HHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHH
Q 014320 274 RAIRLAEFVNTPLYVVHVMSMDA-MEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKAL 352 (427)
Q Consensus 274 ~~~~~~~~~g~~~~i~H~~~~~~-~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l 352 (427)
.++. ..+.. .|.|...... -++++.++++|+.+.+ ||......... + .+ ...| +
T Consensus 211 ~al~---~lg~~-rIgHgv~l~~d~~l~~~l~~~~i~le~--cP~SN~~l~~~---~------~~-~~hP---------i 265 (343)
T 3rys_A 211 EALD---VLHVE-RIDHGIRCMEDTDVVQRLVAEQVPLTV--CPLSNVRLRAV---D------KL-ADHP---------L 265 (343)
T ss_dssp HHHH---TSCCS-EEEECGGGGGCHHHHHHHHHHTCCEEE--CHHHHHHTTSS---S------CG-GGCS---------H
T ss_pred HHHh---cCCcc-eeeeeeeecCChHHHHHHHhcCCCeeE--chhHHHHhCCC---C------Cc-ccch---------H
Confidence 1121 12332 4788866431 3678889999987775 77643222110 0 00 0133 5
Q ss_pred HHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhc
Q 014320 353 QAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGR 425 (427)
Q Consensus 353 ~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~ 425 (427)
.++++.|++++|+||...+... .+. -|+.+. ...-+++.+++ +.++.|+.+
T Consensus 266 ~~ll~~Gv~V~l~TDdp~~~~~-~l~--------------~E~~~a------~~~~~l~~~~l-~~l~~nsi~ 316 (343)
T 3rys_A 266 PEMLAIGLNVCVNSDDPAYFGG-YVD--------------DNFEQL------VKVLEFSVPEQ-ATLAANSIR 316 (343)
T ss_dssp HHHHHTTCCEEECCBSTTTTTC-CHH--------------HHHHHH------HHHHCCCHHHH-HHHHHHHHH
T ss_pred HHHHHCCCeEEEeCCCccccCC-CHH--------------HHHHHH------HHHcCCCHHHH-HHHHHHHHH
Confidence 6699999999999996433221 110 122222 22236999995 555677754
|
| >2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.6e-05 Score=72.60 Aligned_cols=126 Identities=10% Similarity=0.021 Sum_probs=67.1
Q ss_pred cccccccccccCcCCC------CChhhHHHHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhcc---ccceeceecc
Q 014320 106 GGIDPHTHLAMEFMGS------ETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKN---SCMDYGFHMA 176 (427)
Q Consensus 106 G~ID~H~H~~~~~~g~------~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 176 (427)
.+||+|+|+....... ....+.......+.+.||+.++..+.. .+..+...+...+ ....+++|..
T Consensus 2 ~~iD~H~Hl~~~~~~~~~~~~~~h~~d~~~vl~~~~~~GV~~~v~~~~~-----~~~~~~~~~la~~~~~v~~~~GiHP~ 76 (301)
T 2xio_A 2 KFIDIGINLTDPMFRGIYRGVQKHQDDLQDVIGRAVEIGVKKFMITGGN-----LQDSKDALHLAQTNGMFFSTVGCHPT 76 (301)
T ss_dssp CEEEEEECTTCGGGGTEETTEECSCCCHHHHHHHHHHHTEEEEEECCCS-----HHHHHHHHHHHTTCTTEEEEECCCGG
T ss_pred eEEEEcCCCCChHhcccccccccCccCHHHHHHHHHHCCCCEEEEeCCC-----HHHHHHHHHHHHHCCCEEEEEEECcC
Confidence 5899999997652210 000233344566778899999876421 1222232333322 2223333322
Q ss_pred ccC-C----ChhhHHHHHHHHHHc--CCCeEE-EEEecCCCc----cCCHHHHHHHHHHHHHcCCcEEEecC
Q 014320 177 ITK-W----DEVVSDEMEVMVKEK--GINSFK-FFMAYKGSF----MINDELLIEGFKRCKSLGALAMVHAE 236 (427)
Q Consensus 177 ~~~-~----~~~~~~~~~~l~~~~--g~~~ik-~~~~~~~~~----~~~~~~l~~~~~~a~~~g~~v~~H~e 236 (427)
... . .++.++++++++... .+..|+ +.+++.... ....+.++..++.|+++|+||.+|+.
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~aIGEiGLd~~~~~~~~~~~Q~~~f~~ql~lA~~~~lPv~iH~r 148 (301)
T 2xio_A 77 RCGEFEKNNPDLYLKELLNLAENNKGKVVAIGECGLDFDRLQFCPKDTQLKYFEKQFELSEQTKLPMFLHCR 148 (301)
T ss_dssp GTHHHHHHCHHHHHHHHHHHHHTCTTTEEEEEEEEEETTCTTTSCHHHHHHHHHHTHHHHHHHCCCEEEEEE
T ss_pred hhhhCcccccHHHHHHHHHHHhcCCCCeEEEEEeeCCCCcCCCCCHHHHHHHHHHHHHHHHHhCCcEEEEec
Confidence 110 0 013356666666322 344554 345543211 11235788999999999999999984
|
| >3pao_A Adenosine deaminase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: ADE; 2.49A {Pseudomonas aeruginosa} PDB: 3pan_A* 3ou8_A* 3pbm_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=1.6e-05 Score=74.60 Aligned_cols=152 Identities=13% Similarity=0.023 Sum_probs=87.5
Q ss_pred cCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-CChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHH
Q 014320 195 KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATT 273 (427)
Q Consensus 195 ~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~ 273 (427)
.++.++.+.-+. ...+.+.++++++.|++.|+++++|+ |... ... +.
T Consensus 160 ~~vvG~dL~g~E---~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~-~~~----------------------------i~ 207 (326)
T 3pao_A 160 DAFIAVGLDSSE---VGHPPSKFQRVFDRARSEGFLTVAHAGEEGP-PEY----------------------------IW 207 (326)
T ss_dssp GGCSEEEEESCC---TTCCGGGGHHHHHHHHHTTCEECEEESSSSC-HHH----------------------------HH
T ss_pred ccceeeCCCCCC---CCCCHHHHHHHHHHHHHcCCceeeecCCCCC-HHH----------------------------HH
Confidence 356677665432 23456789999999999999999998 4431 111 11
Q ss_pred HHHHHHHhcCCCEEEEcCCCHH-HHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHH
Q 014320 274 RAIRLAEFVNTPLYVVHVMSMD-AMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKAL 352 (427)
Q Consensus 274 ~~~~~~~~~g~~~~i~H~~~~~-~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l 352 (427)
.+++ ..+.. .+.|..... .-++++.++++|+.+.+ ||......... +++ ...| +
T Consensus 208 ~al~---~lg~~-rigHgv~l~~d~~l~~~l~~~~i~le~--cP~SN~~l~~~---~~~-------~~hP---------i 262 (326)
T 3pao_A 208 EALD---LLKVE-RIDHGVRAFEDERLMRRLIDEQIPLTV--CPLSNTKLCVF---DDM-------SQHT---------I 262 (326)
T ss_dssp HHHH---TTCCS-SEEECGGGGGCHHHHHHHHHHTCCEEE--CHHHHHHTTSS---SSG-------GGCC---------H
T ss_pred HHHh---cCCCc-eeeeeeeecccHHHHHHHHHcCCeEEE--CchhHHHhCCC---CCc-------ccCh---------H
Confidence 1111 12222 267776543 12678889999988775 77643222110 000 0234 5
Q ss_pred HHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhc
Q 014320 353 QAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGR 425 (427)
Q Consensus 353 ~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~ 425 (427)
.++++.|++++|+||...+... .+ .-|+.+ ....-+++.+++ +.++.|+++
T Consensus 263 ~~ll~~Gv~V~l~TDdp~~~~~-~l--------------~~e~~~------a~~~~~l~~~~l-~~l~~nsi~ 313 (326)
T 3pao_A 263 LDMLERGVKVTVNSDDPAYFGG-YV--------------TENFHA------LQQSLGMTEEQA-RRLAQNSLD 313 (326)
T ss_dssp HHHHHHTCCEEECCBSHHHHTC-CH--------------HHHHHH------HHHHHCCCHHHH-HHHHHHHHH
T ss_pred HHHHHCCCeEEEeCCCcccCCC-CH--------------HHHHHH------HHHHcCCCHHHH-HHHHHHHHH
Confidence 6688999999999996322111 11 012222 222337999995 666788765
|
| >2pgf_A Adenosine deaminase; metallo-dependent hydrolase, structural genomics, medical ST genomics of pathogenic protozoa consortium, MSGPP; HET: MSE ADN; 1.89A {Plasmodium vivax} PDB: 2pgr_A* 2qvn_A* 3ewc_A* 3ewd_A* 2amx_A | Back alignment and structure |
|---|
Probab=98.04 E-value=5.6e-06 Score=79.39 Aligned_cols=139 Identities=14% Similarity=0.054 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHcCCcEEEec-CChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCC
Q 014320 214 DELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292 (427)
Q Consensus 214 ~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~ 292 (427)
++.++.+++.|+++|+++++|+ |... | .| . ..+..++. ..|.. .+.|+.
T Consensus 214 ~~~~~~~~~~A~~~gl~~~~HagE~~~------------~----------~~-~---~~i~~al~---~lg~~-ri~Hgv 263 (371)
T 2pgf_A 214 LKEYKEIFDYVRESGVPLSVHAGEDVT------------L----------PN-L---NTLYSAIQ---VLKVE-RIGHGI 263 (371)
T ss_dssp GGGGHHHHHHHHHTTCCBEEEESCCTT------------S----------SS-S---HHHHHHHH---TSCCS-EEEECG
T ss_pred HHHHHHHHHHHHHcCCcEEEeeCCCCC------------C----------Cc-h---HHHHHHHh---ccCCC-EEecch
Confidence 6789999999999999999998 5420 0 00 0 01111111 22444 588887
Q ss_pred CHHH-HHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCC
Q 014320 293 SMDA-MEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAF 371 (427)
Q Consensus 293 ~~~~-~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~ 371 (427)
.... -++++.++++|+.+.+ ||......... ..+ ..+| +.++++.|+.++||||....
T Consensus 264 ~l~~~~~l~~~l~~~~i~v~~--cP~SN~~l~~~---------~~~-~~~p---------i~~ll~~Gv~V~lgTD~~~~ 322 (371)
T 2pgf_A 264 RVAESQELIDMVKEKNILLEV--CPISNVLLKNA---------KSM-DTHP---------IRQLYDAGVKVSVNSDDPGM 322 (371)
T ss_dssp GGGGCHHHHHHHHHTTCEEEE--CHHHHHHTTSS---------SCG-GGCT---------HHHHHHTTCEEEECCBCHHH
T ss_pred hccccHHHHHHHHHcCCeEEE--CcchhHHhCCC---------Ccc-ccCh---------HHHHHHCCCeEEEeCCCCcc
Confidence 6432 2458889999987765 87643221110 000 1134 56699999999999996321
Q ss_pred ChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhc
Q 014320 372 NSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGR 425 (427)
Q Consensus 372 ~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~ 425 (427)
..... .-|+.+.. ...+++.+++ +.+|.|+++
T Consensus 323 -~~~~l--------------~~e~~~a~------~~~~l~~~~l-~~lt~ns~~ 354 (371)
T 2pgf_A 323 -FLTNI--------------NDDYEELY------THLNFTLEDF-MKMNEWALE 354 (371)
T ss_dssp -HTCCH--------------HHHHHHHH------HHHCCCHHHH-HHHHHHHHH
T ss_pred -cCCCH--------------HHHHHHHH------HHhCCCHHHH-HHHHHHHHH
Confidence 11111 01222222 2237999996 778899876
|
| >3iar_A Adenosine deaminase; purine metabolism structural genomics, structural genomics consortium, SGC, D mutation, hereditary hemolytic anemia, hydrolase; HET: 3D1; 1.52A {Homo sapiens} SCOP: c.1.9.1 PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A* 1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A* 1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A* 3mvi_A 1a4l_A* ... | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00045 Score=65.65 Aligned_cols=100 Identities=16% Similarity=0.092 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHcCCcEEEec-CChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCC
Q 014320 215 ELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS 293 (427)
Q Consensus 215 ~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~ 293 (427)
+.+..+++.|++.|+++++|+ |.... .. +..++. ..+.. .|.|...
T Consensus 192 ~~f~~~f~~A~~~gl~~~~HagE~~~~-~~----------------------------i~~al~---~lg~~-RIgHgv~ 238 (367)
T 3iar_A 192 PGHVQAYQEAVKSGIHRTVHAGEVGSA-EV----------------------------VKEAVD---ILKTE-RLGHGYH 238 (367)
T ss_dssp HHHHHHHHHHHHHTCEEEEEESSSSCH-HH----------------------------HHHHHH---TSCCS-EEEECGG
T ss_pred HHHHHHHHHHHHcCCeeEEecCCcCCh-HH----------------------------HHHHHH---ccCCc-eeeeeee
Confidence 688999999999999999998 44321 11 111111 22333 4788865
Q ss_pred HH-HHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCC
Q 014320 294 MD-AMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDH 368 (427)
Q Consensus 294 ~~-~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~ 368 (427)
.. .-++++.++++|+.+.+ ||.........- .+ ... .+.++++.|+.++|+||.
T Consensus 239 l~~d~~l~~~l~~~~i~le~--cP~SN~~l~~~~---------~~-~~h---------Pi~~ll~~Gv~v~l~TDd 293 (367)
T 3iar_A 239 TLEDQALYNRLRQENMHFEI--CPWSSYLTGAWK---------PD-TEH---------AVIRLKNDQANYSLNTDD 293 (367)
T ss_dssp GGGCHHHHHHHHHTTCEEEE--CHHHHHHTSSSC---------TT-SCC---------HHHHHHHTTCCEEECCBS
T ss_pred ecCCHHHHHHHHhCCcEEEE--CHHHHHHhCCCC---------Cc-ccC---------hHHHHHHCCCEEEECCCC
Confidence 42 12678889999976665 886432221100 00 012 367789999999999995
|
| >4do7_A Amidohydrolase 2; enzyme function initiative, EFI, structural TIM-barrel fold, putative lactonase; 1.70A {Burkholderia multivorans} PDB: 4dlm_A 4dnm_A* 4dlf_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00016 Score=67.35 Aligned_cols=53 Identities=8% Similarity=0.119 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHcCCCeEEEEEecCCCc--cCCHHHHHHHHHHHHHcCCcEEEecCC
Q 014320 184 VSDEMEVMVKEKGINSFKFFMAYKGSF--MINDELLIEGFKRCKSLGALAMVHAEN 237 (427)
Q Consensus 184 ~~~~~~~l~~~~g~~~ik~~~~~~~~~--~~~~~~l~~~~~~a~~~g~~v~~H~e~ 237 (427)
..++++++. ..|+.+|+....+...+ ...++.+...++.++++|+++.+|...
T Consensus 90 ~~~~L~~l~-~~gv~Gir~~~~~~~~~~~~~~~~~~~~~~~~~~~~glpv~ih~~~ 144 (303)
T 4do7_A 90 LAERVAEWR-GTKLRGFRHQLQDEADVRAFVDDADFARGVAWLQANDYVYDVLVFE 144 (303)
T ss_dssp HHHHHTTCC-SSCEEEEECCGGGSSCHHHHHHCHHHHHHHHHHHHTTCEEEECCCG
T ss_pred HHHHHHHHh-hcCceEEEecCcCCCCccccccCHHHHHHHHHHHHCCCeEEEecCH
Confidence 455666655 56777777653322111 244567889999999999999999754
|
| >3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.20A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0018 Score=58.60 Aligned_cols=164 Identities=13% Similarity=0.061 Sum_probs=86.2
Q ss_pred ccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCC--cH---HHHHHHHHH----Hh----ccccceece
Q 014320 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING--SL---TAGFEAYEK----KA----KNSCMDYGF 173 (427)
Q Consensus 107 ~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~--~~---~~~~~~~~~----~~----~~~~~~~~~ 173 (427)
+||+|+|+... . .+ ....+...||+.++..+..... .. .+.++...+ .. .+.+..+|+
T Consensus 2 ~iDtH~Hld~~--~---~~----~l~~a~~~GV~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~v~~~~Gi 72 (261)
T 3guw_A 2 YFDSHLHSEGL--G---FS----ELVKLKENGIKEVCSLAFFPVKPKYPQTMIDVFRKLTEFEPLRCEAAGVKMHPAVGI 72 (261)
T ss_dssp CCBCCCCGGGC--C---HH----HHHHHHTTSCCEECCBCCCSSCCSSHHHHHHHHHHHHHTHHHHHHTTTCEECCBCCC
T ss_pred eEEeccCCCCC--C---hH----HHHHHHHCCCcEEEEeccCccccchhhhHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
Confidence 79999999764 1 12 2456788999999865432211 11 122222221 11 123344555
Q ss_pred eccccCCChhhHHHHHHHHHHcCCCeEE-EEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcC
Q 014320 174 HMAITKWDEVVSDEMEVMVKEKGINSFK-FFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELG 252 (427)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~g~~~ik-~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G 252 (427)
|..... + ..++..+.++...+..|. +.+++. .....+.+++.++.|+++++||.+|+.....
T Consensus 73 HP~~~~--~-~~~~~~~~l~~~~vvaIGEiGLD~~--~~~Q~~~f~~ql~lA~e~~lPv~iH~r~~~~------------ 135 (261)
T 3guw_A 73 HPRCIP--P-DYEFVLGYLEEGEWVAFGEIGLELV--TDEEIEVLKSQLELAKRMDVPCIIHTPRGNK------------ 135 (261)
T ss_dssp CGGGCC--T-TTHHHHHHHTTSCCSCEEEEECSSC--CHHHHHHHHHHHHHHHHHTCCEEEECCSSST------------
T ss_pred Cccccc--c-cHHHHHHHhCcCCeEEEEEecCCCC--hHHHHHHHHHHHHHHHHhCCeEEEEcCCCcc------------
Confidence 543221 1 112222333235566664 445543 1122456889999999999999999864310
Q ss_pred CCCcccccccCCHHHHHHHHHHHHHHHHhcC---CCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCc
Q 014320 253 ITGPEGHALSRPPLLEGEATTRAIRLAEFVN---TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVV 316 (427)
Q Consensus 253 ~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g---~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p 316 (427)
.++..+.+++.++.+ .+..+.|++ .+.++++.+.|..+...+.|
T Consensus 136 ----------------~~a~~~~~~il~~~~~~~~~~vi~H~~----~~~a~~~l~~G~yis~~~~p 182 (261)
T 3guw_A 136 ----------------LKATRKTLEILESLDFPADLAVIDHVN----FETLDMVLETEYWIGLTVQP 182 (261)
T ss_dssp ----------------THHHHHHHHHHHHTTCCTTSEEEESCC----TTTHHHHHTSSSEEEEECC-
T ss_pred ----------------cchHHHHHHHHHHcCCCCCCEEEEeCC----HHHHHHHHhCCEEEEecCCC
Confidence 011222333344433 235577983 34566677788777665444
|
| >2dvt_A Thermophilic reversible gamma-resorcylate decarbo; TIM barrel, lyase; 1.70A {Rhizobium SP} SCOP: c.1.9.15 PDB: 2dvu_A* 2dvx_A* 3s4t_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00053 Score=64.22 Aligned_cols=55 Identities=11% Similarity=0.070 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHcCCCeEEEEEecCC-----CccCCHHHHHHHHHHHHHcCCcEEEecCC
Q 014320 183 VVSDEMEVMVKEKGINSFKFFMAYKG-----SFMINDELLIEGFKRCKSLGALAMVHAEN 237 (427)
Q Consensus 183 ~~~~~~~~l~~~~g~~~ik~~~~~~~-----~~~~~~~~l~~~~~~a~~~g~~v~~H~e~ 237 (427)
+..++++++++..|+.++++...+.. ....+++.+..+++.|.++|++|.+|+.+
T Consensus 108 ~~~~el~~~~~~~g~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~lpv~iH~~~ 167 (327)
T 2dvt_A 108 AATEELQRCVNDLGFVGALVNGFSQEGDGQTPLYYDLPQYRPFWGEVEKLDVPFYLHPRN 167 (327)
T ss_dssp HHHHHHHHHHHTTCCCEEEEESSBCCTTCCSCBCTTSGGGHHHHHHHHHHTCCEEEECCC
T ss_pred HHHHHHHHHHhcCCceEEEECCCCCCCcccCCCCCCCcchHHHHHHHHHcCCeEEECCCC
Confidence 46778888875569999987766531 23456788999999999999999999753
|
| >3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein structure initiative, TI protein; HET: GOL; 1.76A {Bordetella bronchiseptica} PDB: 3k4w_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.015 Score=53.39 Aligned_cols=55 Identities=13% Similarity=0.201 Sum_probs=42.2
Q ss_pred hhhHHHHHHHHHHcCCCeEEEEEecCC-CccCCHHHHHHHHHHHHHcCCcEEEecCC
Q 014320 182 EVVSDEMEVMVKEKGINSFKFFMAYKG-SFMINDELLIEGFKRCKSLGALAMVHAEN 237 (427)
Q Consensus 182 ~~~~~~~~~l~~~~g~~~ik~~~~~~~-~~~~~~~~l~~~~~~a~~~g~~v~~H~e~ 237 (427)
++..+++++ +...|+.++++...+.+ ....+++.+..+++.|.++|++|.+|+..
T Consensus 105 ~~a~~eL~~-~~~~g~~Gi~~~~~~~~~~~~~~d~~~~~~~~~a~e~glpv~iH~~~ 160 (291)
T 3irs_A 105 KEAMAQMQE-ILDLGIRIVNLEPGVWATPMHVDDRRLYPLYAFCEDNGIPVIMMTGG 160 (291)
T ss_dssp HHHHHHHHH-HHHTTCCCEEECGGGSSSCCCTTCGGGHHHHHHHHHTTCCEEEECSS
T ss_pred HHHHHHHHH-HHhCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEeCCC
Confidence 456777888 55789999998754421 23356788999999999999999999854
|
| >2f6k_A Metal-dependent hydrolase; metal dependent hydrolyse, aminohydro_2, ACMDS, ACMS, trypto metabolism, quinolinic acid, QUIN; 2.50A {Lactobacillus plantarum} SCOP: c.1.9.15 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0025 Score=58.99 Aligned_cols=55 Identities=9% Similarity=0.168 Sum_probs=43.0
Q ss_pred hhhHHHHHHHHHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCC
Q 014320 182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN 237 (427)
Q Consensus 182 ~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~ 237 (427)
++..++++++++..|+.++++...+.+ ...+++.+..+++.|.++|++|.+|+..
T Consensus 103 ~~~~~el~~~~~~~g~~gi~~~~~~~~-~~~~~~~~~~~~~~a~~~~lpv~iH~~~ 157 (307)
T 2f6k_A 103 LDAVKTVQQALDQDGALGVTVPTNSRG-LYFGSPVLERVYQELDARQAIVALHPNE 157 (307)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEESEETT-EETTCGGGHHHHHHHHTTTCEEEEECCC
T ss_pred HHHHHHHHHHHhccCCcEEEEeccCCC-CCCCcHhHHHHHHHHHHcCCeEEECCCC
Confidence 456778888775579999988776543 2345678999999999999999999854
|
| >4gxw_A Adenosine deaminase; amidohydrolase, COG1816, EFI, structural genomics, hydrolase; 1.30A {Burkholderia ambifaria} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.012 Score=56.13 Aligned_cols=121 Identities=16% Similarity=0.122 Sum_probs=67.5
Q ss_pred cCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-CChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHH
Q 014320 195 KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATT 273 (427)
Q Consensus 195 ~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~ 273 (427)
.++.+|.+..+.. ...++.+..+++.|++.|+++.+|+ |.....+ .+.
T Consensus 180 ~~VvG~dL~g~E~---~~p~~~f~~~f~~ar~~Gl~~t~HAGE~~~p~~----------------------------~i~ 228 (380)
T 4gxw_A 180 DEVAGIGIDYREN---DRPPELFWKAYRDARAAGFRTTAHAGEFGMPWR----------------------------NVE 228 (380)
T ss_dssp TTBCEEEEESCCT---TCCGGGGHHHHHHHHHTTCEEEEEESCTTCCHH----------------------------HHH
T ss_pred CCEEEEeecCCCC---CCCHHHHHHHHHHHHHcCCCeeeeccccCCchH----------------------------HHH
Confidence 3455665543322 2345678899999999999999998 5321111 111
Q ss_pred HHHHHHHhcCCCEEEEcCCCH-HHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHH
Q 014320 274 RAIRLAEFVNTPLYVVHVMSM-DAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKAL 352 (427)
Q Consensus 274 ~~~~~~~~~g~~~~i~H~~~~-~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l 352 (427)
.++. ..|+ -.|.|.... +.-++++.++++|+.+. +||........... ....-.-|+
T Consensus 229 ~al~---~lga-~RIgHG~~~~~d~~L~~~l~~~~I~lE--vCP~SN~~l~~v~~-------~~~~~~HP~--------- 286 (380)
T 4gxw_A 229 TAVD---LLHV-DRVDHGYTIVDNPELCARYAERGIVFT--VVPTNSYYLRTLPP-------DQWAERHPM--------- 286 (380)
T ss_dssp HHHH---TSCC-SEEEECGGGGGCHHHHHHHHHHTCEEE--ECTTCHHHHHHSCT-------TTHHHHCGG---------
T ss_pred HHHH---HcCC-cccccceeeccChHHHHHHHHhCceeE--ECCcchhhhccccc-------ccccccChH---------
Confidence 2221 1222 246676442 22367888888887665 58853321111000 000001244
Q ss_pred HHHHhcCCceEEecCC
Q 014320 353 QAALATGILQLVGTDH 368 (427)
Q Consensus 353 ~~~l~~G~~~~lgSD~ 368 (427)
..+++.|+.++|+||.
T Consensus 287 ~~l~~~Gv~vtinTDD 302 (380)
T 4gxw_A 287 RKMPGLGLKIHPNTDD 302 (380)
T ss_dssp GGTGGGTCEEEECCBS
T ss_pred HHHHHCCCeEEECCCC
Confidence 4488999999999995
|
| >3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.074 Score=50.74 Aligned_cols=130 Identities=12% Similarity=0.037 Sum_probs=71.3
Q ss_pred ccccccccccccCcCC------CCChhhHHHHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhcc-----ccceece
Q 014320 105 PGGIDPHTHLAMEFMG------SETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKN-----SCMDYGF 173 (427)
Q Consensus 105 PG~ID~H~H~~~~~~g------~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 173 (427)
+-|||+|+|+..+.+. ....+++..-...|...||+.++..+.... .....++..++ -+. .+..+|+
T Consensus 12 ~~~iDih~nL~d~~f~g~y~~~~~h~~D~~~vl~rA~~~GV~~ii~~g~~l~-~s~~~~~La~~-~~~~~~~~l~~tvGv 89 (401)
T 3e2v_A 12 LKYYDIGLNLTDPMFHGIYNGKQYHPADYVKLLERAAQRHVKNALVTGSSIA-ESQSAIELVSS-VKDLSPLKLYHTIGV 89 (401)
T ss_dssp CCEEEEEECTTSGGGGTEETTEECSCCCHHHHHHHHHHTTEEEEEECCCSHH-HHHHHHHHHHH-HTTTCSSEEEEEECC
T ss_pred CCeEEEEeCcCcHHHhhhccccccCccCHHHHHHHHHHCCCCEEEEecCCHH-HHHHHHHHHHH-CCCccccceEEEEEE
Confidence 4699999999876321 112345555577788899999986542211 22222222222 122 2445566
Q ss_pred ecccc-CCCh------------------------------------hhHHHHHHHHHH------cCCCeEE-EEEecCCC
Q 014320 174 HMAIT-KWDE------------------------------------VVSDEMEVMVKE------KGINSFK-FFMAYKGS 209 (427)
Q Consensus 174 ~~~~~-~~~~------------------------------------~~~~~~~~l~~~------~g~~~ik-~~~~~~~~ 209 (427)
|.... ...+ +.++++.+++.. ..+..|. +.+++...
T Consensus 90 HP~~~~e~~~~~~~~~~~~~~~~p~~d~~~~~~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~vvAIGEiGLDy~~~ 169 (401)
T 3e2v_A 90 HPCCVNEFADASQGDKASASIDNPSMDEAYNESLYAKVISNPSFAQGKLKELYDLMNQQAKPHDTSFRSIGEIGLDYDRF 169 (401)
T ss_dssp CGGGGGGGC------------------CHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHCSTTCSEEEEEEEEEETTCT
T ss_pred CcChhhhcccccccccccccccccccccccccccccccccccccchHHHHHHHHHHHhhhhccCCcEEEEEEEeCCCCcC
Confidence 54221 1111 125556665532 2234444 45666321
Q ss_pred ccC----CHHHHHHHHHHHHHc----CCcEEEecC
Q 014320 210 FMI----NDELLIEGFKRCKSL----GALAMVHAE 236 (427)
Q Consensus 210 ~~~----~~~~l~~~~~~a~~~----g~~v~~H~e 236 (427)
... -.+.+++.++.|+++ ++||.+|+-
T Consensus 170 ~~~~~e~Q~~~F~~QL~LA~e~~~~~~lPv~IH~R 204 (401)
T 3e2v_A 170 HYSSKEMQKVFFEEQLKISCLNDKLSSYPLFLHMR 204 (401)
T ss_dssp TTSCHHHHHHHHHHHHHHTTSSHHHHTSCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhccCCCeEEEEec
Confidence 111 235678889999999 999999984
|
| >2wm1_A 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; neurological disorders, metal-dependent amidohydrolase, kynurenine pathway; HET: 13P; 2.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.11 Score=48.45 Aligned_cols=55 Identities=24% Similarity=0.278 Sum_probs=43.0
Q ss_pred hhhHHHHHHHHHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCC
Q 014320 182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN 237 (427)
Q Consensus 182 ~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~ 237 (427)
++..++++++++..|+.++++...+.+ ...+++.+..+++.+.++|++|.+|+..
T Consensus 123 ~~a~~el~~~~~~~g~~Gv~l~~~~~~-~~l~d~~~~~~~~~~~e~~lpv~iH~~~ 177 (336)
T 2wm1_A 123 ELAVKEMERCVKELGFPGVQIGTHVNE-WDLNAQELFPVYAAAERLKCSLFVHPWD 177 (336)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEESEETT-EETTCGGGHHHHHHHHHHTCEEEEECCS
T ss_pred HHHHHHHHHHHHccCCeEEEECCcCCC-CCCCCccHHHHHHHHHHcCCEEEECCCC
Confidence 356778888875579999987655443 3456778999999999999999999853
|
| >2hbv_A 2-amino-3-carboxymuconate 6-semialdehyde decarbox; ACMSD, TIM-barrel, decarboxylase, metaloenzyme, lyase; 1.65A {Pseudomonas fluorescens} SCOP: c.1.9.15 PDB: 2hbx_A | Back alignment and structure |
|---|
Probab=94.64 E-value=0.24 Score=46.18 Aligned_cols=54 Identities=15% Similarity=0.134 Sum_probs=43.2
Q ss_pred hhhHHHHHHHHHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCC
Q 014320 182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN 237 (427)
Q Consensus 182 ~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~ 237 (427)
+...++++++. ..|+.++++.....+ ...+++.+..+++.+.++|++|.+|+..
T Consensus 127 ~~a~~el~~~~-~~g~~Gv~l~~~~~~-~~l~d~~~~p~~~~~~e~~lpv~iH~~~ 180 (334)
T 2hbv_A 127 DLACKEASRAV-AAGHLGIQIGNHLGD-KDLDDATLEAFLTHCANEDIPILVHPWD 180 (334)
T ss_dssp HHHHHHHHHHH-HHTCCCEEEESCBTT-BCTTSHHHHHHHHHHHHTTCCEEEECCS
T ss_pred HHHHHHHHHHH-HcCCeEEEECCCCCC-CCCCcHHHHHHHHHHHHCCCEEEECCCC
Confidence 35677888888 789999987665443 3457789999999999999999999854
|
| >2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A | Back alignment and structure |
|---|
Probab=94.51 E-value=0.32 Score=43.18 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=29.2
Q ss_pred ccccccccccccCc-CCCCChhhHHHHHHHHHcCCceEEe
Q 014320 105 PGGIDPHTHLAMEF-MGSETIDDFFSGQAAALAGGTTMHI 143 (427)
Q Consensus 105 PG~ID~H~H~~~~~-~g~~~~e~~~~~~~~~l~~GvTtv~ 143 (427)
.|++|.|+|..... .|..+.++.....+.|...|++.+.
T Consensus 3 ~~m~D~H~Ht~~~~ddg~~~~e~~~e~i~~A~~~Gi~~i~ 42 (247)
T 2wje_A 3 MGMIDIHSHIVFDVDDGPKSREESKALLAESYRQGVRTIV 42 (247)
T ss_dssp -CEEECCBCCSTTSSSSCSSHHHHHHHHHHHHHTTEEEEE
T ss_pred CCCEEEecccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Confidence 46899999984331 3556667666678999999999887
|
| >3lgd_A Adenosine deaminase CECR1; TIM barrel, dimerization and receptor binding domains, glyco hydrolase, growth factor, secreted; HET: NAG; 2.00A {Homo sapiens} PDB: 3lgg_A* | Back alignment and structure |
|---|
Probab=94.22 E-value=0.075 Score=52.42 Aligned_cols=106 Identities=16% Similarity=0.072 Sum_probs=62.5
Q ss_pred CHHHHHHHHHH--HHHcCCcEEEec-CChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEE
Q 014320 213 NDELLIEGFKR--CKSLGALAMVHA-ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV 289 (427)
Q Consensus 213 ~~~~l~~~~~~--a~~~g~~v~~H~-e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~ 289 (427)
+.+.+..+++. |++.|+++.+|+ |.... |. .++ ..+..++. .|.. .|.
T Consensus 307 p~~~f~~~f~~~~A~~~gl~~t~HAGE~~~~-----------g~---------~~~----~~i~~Al~----Lga~-RIg 357 (508)
T 3lgd_A 307 SLHDYKEALMIPAKDGVKLPYFFHAGETDWQ-----------GT---------SID----RNILDALM----LNTT-RIG 357 (508)
T ss_dssp CTGGGHHHHTHHHHTTCCCCBCCEECCSSCC-----------SS---------TTT----THHHHHHH----TTCS-SEE
T ss_pred CHHHHHHHHHHHHHHHcCCceeeecccccCC-----------CC---------CcH----HHHHHHHh----cCCc-eee
Confidence 45567778877 888999999998 54210 00 000 11222221 2322 378
Q ss_pred cCCCHH-HHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCC
Q 014320 290 HVMSMD-AMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDH 368 (427)
Q Consensus 290 H~~~~~-~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~ 368 (427)
|..... .-++++.++++|+.+.+ ||......... ++ + ...| +.++++.|++++|+||.
T Consensus 358 HGv~l~~dp~l~~~l~~~~I~lev--CP~SN~~l~~v---~~------~-~~hP---------~~~ll~~Gv~V~l~TDd 416 (508)
T 3lgd_A 358 HGFALSKHPAVRTYSWKKDIPIEV--CPISNQVLKLV---SD------L-RNHP---------VATLMATGHPMVISSDD 416 (508)
T ss_dssp ECTTGGGCHHHHHHHHHTTCCEEE--CHHHHHHTTSC---SS------G-GGCT---------HHHHHHTTCCEEECCBS
T ss_pred eeEecCccHHHHHHHHhcCCeEEE--CcchHHHhCCC---CC------c-ccCh---------HHHHHHCCCcEEEcCCC
Confidence 887653 13678889999987775 77643322110 00 0 1133 56688999999999996
|
| >3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A | Back alignment and structure |
|---|
Probab=93.22 E-value=0.6 Score=41.84 Aligned_cols=38 Identities=26% Similarity=0.187 Sum_probs=27.9
Q ss_pred ccccccccccC-cCCCCChhhHHHHHHHHHcCCceEEec
Q 014320 107 GIDPHTHLAME-FMGSETIDDFFSGQAAALAGGTTMHID 144 (427)
Q Consensus 107 ~ID~H~H~~~~-~~g~~~~e~~~~~~~~~l~~GvTtv~d 144 (427)
+||.|+|.... -.|..+.++.....+.+.+.|++.+.-
T Consensus 1 m~D~H~H~~~~~ddG~~~~~~sl~~~~~a~~~G~~~i~~ 39 (262)
T 3qy7_A 1 MIDIHCHILPAMDDGAGDSADSIEMARAAVRQGIRTIIA 39 (262)
T ss_dssp CEESSBCCSTTSSSSCSSHHHHHHHHHHHHHTTCCEEEC
T ss_pred CEEEeecCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 68999998642 125556666555688899999999973
|
| >2a3l_A AMP deaminase, AMPD; atampd, AT2G38280, adenosine 5'-monophosphate deaminase, COF 5'-phosphate, structural genomics; HET: CF5; 3.34A {Arabidopsis thaliana} SCOP: c.1.9.1 | Back alignment and structure |
|---|
Probab=93.20 E-value=0.031 Score=57.15 Aligned_cols=94 Identities=11% Similarity=-0.069 Sum_probs=54.4
Q ss_pred EEcCCCHHH-HHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEec
Q 014320 288 VVHVMSMDA-MEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGT 366 (427)
Q Consensus 288 i~H~~~~~~-~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgS 366 (427)
|.|+..... -.+++.+++.|+.|.+ ||....... ..+ ...| +.++++.|+.++|+|
T Consensus 541 IgHGv~l~edp~Li~lla~~~I~vev--CP~SN~kl~-----------~~~-~~HP---------i~~ll~~Gv~VsLgT 597 (701)
T 2a3l_A 541 IAHGINLRKSPVLQYLYYLAQIGLAM--SPLSNNSLF-----------LDY-HRNP---------FPVFFLRGLNVSLST 597 (701)
T ss_dssp CSCCGGGGGCHHHHHHHHHHTCCEEE--CHHHHTTTT-----------CCS-TTCS---------HHHHHHTTCCEEECC
T ss_pred EEEEeecccCHHHHHHHHHcCCcEEE--Cccchhhhc-----------cCc-hHhH---------HHHHHHCCCcEEEeC
Confidence 566654322 2457888889988776 775332111 111 0123 566899999999999
Q ss_pred CCCCCChhh--hhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhc
Q 014320 367 DHCAFNSTQ--KAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGR 425 (427)
Q Consensus 367 D~~p~~~~~--~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~ 425 (427)
|........ .+. -|+.+... ..+++..++.++ |.|+++
T Consensus 598 Ddp~~~~~t~~dL~--------------~Ey~~aa~------~~~ls~~dl~~l-a~Ns~~ 637 (701)
T 2a3l_A 598 DDPLQIHLTKEPLV--------------EEYSIAAS------VWKLSACDLCEI-ARNSVY 637 (701)
T ss_dssp BCHHHHCCSSSHHH--------------HHHHHHHH------HHTCCHHHHHHH-HHHHHH
T ss_pred CCccccCCCCcCHH--------------HHHHHHHH------HcCCCHHHHHHH-HHHHHH
Confidence 974332211 111 13333322 236999997777 788876
|
| >3ij6_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structure initiative; 2.00A {Lactobacillus acidophilus} | Back alignment and structure |
|---|
Probab=92.30 E-value=0.14 Score=47.35 Aligned_cols=55 Identities=13% Similarity=0.125 Sum_probs=42.9
Q ss_pred hhhHHHHHHHHHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCC
Q 014320 182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN 237 (427)
Q Consensus 182 ~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~ 237 (427)
+...++++++++..|..++++.....+ ...+++.+..+.+.+.++|++|.+|+..
T Consensus 110 ~~a~~el~r~~~~~G~~Gv~l~~~~~~-~~l~d~~~~p~~~~~~e~g~pv~iH~g~ 164 (312)
T 3ij6_A 110 ESACKVISSIKDDENLVGAQIFTRHLG-KSIADKEFRPVLAQAAKLHVPLWMHPVF 164 (312)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEESEETT-EETTSTTTHHHHHHHHHTTCCEEEECCC
T ss_pred HHHHHHHHHHHHhCCCceEeccCCCCC-CCCCCccHHHHHHHHHHcCCeEEEcCCC
Confidence 446778888875578889988755443 4457778999999999999999999743
|
| >3nur_A Amidohydrolase; TIM barrel; 1.75A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=90.70 E-value=0.79 Score=43.12 Aligned_cols=56 Identities=14% Similarity=0.160 Sum_probs=43.7
Q ss_pred hhhHHHHHHHHHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCCh
Q 014320 182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG 238 (427)
Q Consensus 182 ~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~ 238 (427)
+...+++++.++..|+.++++...+.+ ...+++.+..+.+.+.++|++|.+|+...
T Consensus 141 ~~a~~El~r~~~~~G~~Gv~l~~~~~~-~~~~d~~~~p~~~~~~e~g~pV~iH~g~~ 196 (357)
T 3nur_A 141 EAAAREFERCINDLGFKGALIMGRAQD-GFLDQDKYDIIFKTAENLDVPIYLHPAPV 196 (357)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEESCBTT-BCTTSGGGHHHHHHHHHHTCCEEEECCCC
T ss_pred HHHHHHHHHHHhhcCceEEEeCCCCCC-CCCCCccHHHHHHHHHhcCCeEEEecCCC
Confidence 456788888775689999998754332 34577889999999999999999998543
|
| >3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=85.59 E-value=4.7 Score=35.45 Aligned_cols=42 Identities=10% Similarity=0.002 Sum_probs=25.6
Q ss_pred HHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEe
Q 014320 192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVH 234 (427)
Q Consensus 192 ~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H 234 (427)
+++.|.+++.++... -....+++.++++.+.++++|+.+..+
T Consensus 39 ~~~~G~~~vEl~~~~-~~~~~~~~~~~~~~~~l~~~gl~i~~~ 80 (257)
T 3lmz_A 39 LERLDIHYLCIKDFH-LPLNSTDEQIRAFHDKCAAHKVTGYAV 80 (257)
T ss_dssp HHHTTCCEEEECTTT-SCTTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHhCCCEEEEeccc-CCCCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 336777777665431 122346667777777777777776555
|
| >3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=85.54 E-value=18 Score=31.72 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=30.0
Q ss_pred HHHcCCCeEEEEEecC---CCccCCHHHHHHHHHHHHHcCC-cEEEec
Q 014320 192 VKEKGINSFKFFMAYK---GSFMINDELLIEGFKRCKSLGA-LAMVHA 235 (427)
Q Consensus 192 ~~~~g~~~ik~~~~~~---~~~~~~~~~l~~~~~~a~~~g~-~v~~H~ 235 (427)
+.+.|.+.+.++.... .....+++.+.++.+.++++|+ .+.+|.
T Consensus 23 ~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~h~ 70 (270)
T 3aam_A 23 ATALGLTAFQIFAKSPRSWRPRALSPAEVEAFRALREASGGLPAVIHA 70 (270)
T ss_dssp HHHHTCSCEEEESSCTTCCSCCCCCHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred HHHcCCCEEEEeCCCCCcCcCCCCCHHHHHHHHHHHHHcCCceEEEec
Confidence 3367888887755321 1123457788888888888888 888885
|
| >3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=84.96 E-value=4.5 Score=35.67 Aligned_cols=41 Identities=17% Similarity=0.164 Sum_probs=25.6
Q ss_pred HcCCCeEEEEEecC------C---CccCCHHHHHHHHHHHHHcCCcEEEe
Q 014320 194 EKGINSFKFFMAYK------G---SFMINDELLIEGFKRCKSLGALAMVH 234 (427)
Q Consensus 194 ~~g~~~ik~~~~~~------~---~~~~~~~~l~~~~~~a~~~g~~v~~H 234 (427)
+.|.+.+.++.... + ....+++.+.++.+.++++|+.+..|
T Consensus 33 ~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~ 82 (262)
T 3p6l_A 33 ELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGT 82 (262)
T ss_dssp HTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEE
Confidence 67777776654210 0 22345667777777777788777666
|
| >2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A | Back alignment and structure |
|---|
Probab=84.50 E-value=20 Score=31.39 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=25.0
Q ss_pred ccccccccccCcCCCCChhhHHHHHHHHHcCCceEEe
Q 014320 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHI 143 (427)
Q Consensus 107 ~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~ 143 (427)
++|.|+|...+..|..+.+++ .+.|.+.|++.+.
T Consensus 1 ~~DlH~Ht~~S~DG~~~~ee~---v~~A~~~Gl~~ia 34 (267)
T 2yxo_A 1 MVDSHVHTPLCGHAEGHPEAY---LEEARAKGLKGVV 34 (267)
T ss_dssp CEEEEECCGGGSSCCSCHHHH---HHHHHHTTCSEEE
T ss_pred CCccCcCcCCCCCCCCCHHHH---HHHHHHcCCCEEE
Confidence 589999986553455566654 7788899998775
|
| >2gwg_A 4-oxalomesaconate hydratase; TIM-barrel like protein, structural genomics, PSI, protein S initiative; 1.80A {Rhodopseudomonas palustris} SCOP: c.1.9.15 | Back alignment and structure |
|---|
Probab=83.38 E-value=3.1 Score=38.69 Aligned_cols=56 Identities=23% Similarity=0.278 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHHHcCCCeEEEEEecCC----CccCCHHHHHHHHHHHHHcCCcEEEecCC
Q 014320 182 EVVSDEMEVMVKEKGINSFKFFMAYKG----SFMINDELLIEGFKRCKSLGALAMVHAEN 237 (427)
Q Consensus 182 ~~~~~~~~~l~~~~g~~~ik~~~~~~~----~~~~~~~~l~~~~~~a~~~g~~v~~H~e~ 237 (427)
++..++++++++..|+.++++..++.+ ....+++.+..+++.|.++|++|.+|+..
T Consensus 122 ~~a~~eL~r~~~~~g~~Gv~l~~~~~~~~~~~~~l~d~~~~p~~~~a~e~~lpv~iH~~~ 181 (350)
T 2gwg_A 122 KTCIPELEKCVKEYGFVAINLNPDPSGGHWTSPPLTDRIWYPIYEKMVELEIPAMIHVST 181 (350)
T ss_dssp GGGHHHHHHHHHTSCCCEEEECSCTTSSCCCSCCTTSGGGHHHHHHHHHHTCCEEECCCC
T ss_pred HHHHHHHHHHHhccCCeEEEECCCCCCccCCCCCCCCHHHHHHHHHHHHcCCeEEECCCC
Confidence 566788888886679999987655332 12357788999999999999999999854
|
| >1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A | Back alignment and structure |
|---|
Probab=80.22 E-value=25 Score=31.52 Aligned_cols=119 Identities=17% Similarity=0.204 Sum_probs=69.9
Q ss_pred hhhHHHHHHHHHHcCCCeEEEEEecC--CCccC-CHHHHHHHHHHHHH----cCCcEEEecCChhhHHHHHHHHHHcCCC
Q 014320 182 EVVSDEMEVMVKEKGINSFKFFMAYK--GSFMI-NDELLIEGFKRCKS----LGALAMVHAENGDAVFEGQKRMIELGIT 254 (427)
Q Consensus 182 ~~~~~~~~~l~~~~g~~~ik~~~~~~--~~~~~-~~~~l~~~~~~a~~----~g~~v~~H~e~~~~~~~~~~~l~~~G~~ 254 (427)
+..++..++++ +.|++.|.+..... +...+ ..++++++....+. .+++++++....+.++.++ +.|..
T Consensus 38 ~~a~~~a~~~v-~~GAdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~~~~~piSIDT~~~~va~aAl----~aGa~ 112 (282)
T 1aj0_A 38 IDAVKHANLMI-NAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRFEVWISVDTSKPEVIRESA----KVGAH 112 (282)
T ss_dssp HHHHHHHHHHH-HHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHH----HTTCC
T ss_pred HHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhhcCCeEEEeCCCHHHHHHHH----HcCCC
Confidence 34555566666 78999999876432 21222 35666555444433 3999999998887665443 33543
Q ss_pred Cccccc-ccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCC---C----------------HHHHHHHHHHhhcCCC---EE
Q 014320 255 GPEGHA-LSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM---S----------------MDAMEEIAKARKAGQR---VI 311 (427)
Q Consensus 255 ~~~~~~-~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~---~----------------~~~~~~i~~~~~~G~~---v~ 311 (427)
-..... ... .+.+.+++++++++.+.|.. . ..-.+.++.+.+.|++ +.
T Consensus 113 iINdvsg~~d---------~~~~~~~a~~~~~vVlmh~~G~p~tm~~~~~y~d~~~ev~~~l~~~i~~a~~~Gi~~~~Ii 183 (282)
T 1aj0_A 113 IINDIRSLSE---------PGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAGIAKEKLL 183 (282)
T ss_dssp EEEETTTTCS---------TTHHHHHHHHTCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEE
T ss_pred EEEECCCCCC---------HHHHHHHHHhCCeEEEEccCCCCccccccCccchHHHHHHHHHHHHHHHHHHcCCChhhEE
Confidence 222111 112 23456677889999999973 0 1123456677788975 66
Q ss_pred Eec
Q 014320 312 GEP 314 (427)
Q Consensus 312 ~~~ 314 (427)
.++
T Consensus 184 lDP 186 (282)
T 1aj0_A 184 LDP 186 (282)
T ss_dssp EEC
T ss_pred EeC
Confidence 543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 427 | ||||
| d2ftwa2 | 334 | c.1.9.6 (A:60-393) Dihydropyrimidine amidohydrolas | 5e-69 | |
| d1kcxa2 | 334 | c.1.9.6 (A:67-400) Dihydropyrimidinase related pro | 6e-69 | |
| d1ynya2 | 332 | c.1.9.6 (A:53-384) D-hydantoinase {Bacillus sp. AR | 4e-63 | |
| d1nfga2 | 330 | c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pi | 1e-57 | |
| d2fvka2 | 384 | c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolas | 4e-57 | |
| d1gkpa2 | 335 | c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [Ta | 2e-52 | |
| d1gkra2 | 325 | c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter au | 4e-41 | |
| d1xrta2 | 310 | c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aqui | 1e-37 | |
| d2vhla2 | 301 | c.1.9.10 (A:58-358) N-acetylglucosamine-6-phosphat | 5e-19 | |
| d1i0da_ | 331 | c.1.9.3 (A:) Phosphotriesterase (parathion hydrola | 8e-17 | |
| d2fvka1 | 156 | b.92.1.3 (A:2-56,A:441-541) Dihydropyrimidine amid | 2e-12 | |
| d1onwa1 | 105 | b.92.1.7 (A:1-62,A:347-389) Isoaspartyl dipeptidas | 2e-12 | |
| d2ftwa1 | 150 | b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine amid | 7e-12 | |
| d2r8ca1 | 102 | b.92.1.9 (A:2-57,A:369-414) Uncharacterized protei | 2e-11 | |
| d1kcxa1 | 142 | b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase r | 4e-11 | |
| d1gkpa1 | 123 | b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermu | 6e-11 | |
| d2eg6a1 | 343 | c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli | 5e-10 | |
| d1ynya1 | 127 | b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacill | 6e-10 | |
| d1m7ja1 | 55 | b.92.1.6 (A:7-61) N-acyl-D-aminoacid amidohydrolas | 1e-09 | |
| d1gkra1 | 126 | b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthro | 3e-08 | |
| d1k1da1 | 128 | b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacill | 3e-08 | |
| d2qs8a1 | 96 | b.92.1.9 (A:7-63,A:374-412) Xaa-Pro dipeptidase {A | 2e-07 | |
| d1ejxc1 | 181 | b.92.1.1 (C:1002-1129,C:1423-1475) alpha-Subunit o | 2e-07 | |
| d1onwa2 | 284 | c.1.9.13 (A:63-346) Isoaspartyl dipeptidase, catal | 3e-06 | |
| d1nfga1 | 127 | b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkho | 7e-06 | |
| d1yrra1 | 85 | b.92.1.5 (A:1-53,A:351-382) N-acetylglucosamine-6- | 5e-05 | |
| d2vhla1 | 91 | b.92.1.5 (A:3-57,A:359-394) N-acetylglucosamine-6- | 6e-05 | |
| d2p9ba1 | 118 | b.92.1.10 (A:9-70,A:395-450) Uncharacterized prote | 1e-04 |
| >d2ftwa2 c.1.9.6 (A:60-393) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidine amidohydrolase Pyd2 species: Dictyostelium discoideum [TaxId: 44689]
Score = 219 bits (559), Expect = 5e-69
Identities = 178/320 (55%), Positives = 226/320 (70%), Gaps = 3/320 (0%)
Query: 105 PGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKK 163
PGGID HTH + FMG+ ++DDF G AA+AGGTT IDFVIP G SL ++ ++K
Sbjct: 1 PGGIDTHTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFVIPTRGQSLLEAYDQWKKW 60
Query: 164 A-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFK 222
A + DY H+AIT W E VS EME++VKE+G+NSFK FMAYK SFM+ D+ + FK
Sbjct: 61 ADEKVNCDYSLHVAITWWSEQVSREMEILVKERGVNSFKCFMAYKNSFMVTDQEMYHIFK 120
Query: 223 RCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFV 282
RCK LGA+A VHAENGD VFEGQK+M+E+GITGPEGH LSRP LE EAT RAI +A+ V
Sbjct: 121 RCKELGAIAQVHAENGDMVFEGQKKMLEMGITGPEGHELSRPEALEAEATNRAIVIADSV 180
Query: 283 NTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPP 342
TP+Y+VHV S+ A + I K RK G RV GEP+ +GL +D S +W+ D+ AA +VM PP
Sbjct: 181 CTPVYIVHVQSIGAADVICKHRKEGVRVYGEPIAAGLGVDGSHMWNHDWRHAAAFVMGPP 240
Query: 343 IRASGHNKALQAA-LATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVW 401
IR K + LA G L VGTD+C F + QKA G DDF KIPNGVNG+E+RM +VW
Sbjct: 241 IRPDPRTKGVLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFTKIPNGVNGVEDRMSIVW 300
Query: 402 DTMVESGQISVTDYVRLTST 421
+ V +G+++ +VR TS+
Sbjct: 301 ENGVNTGKLTWCQFVRATSS 320
|
| >d1kcxa2 c.1.9.6 (A:67-400) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidinase related protein-1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 219 bits (559), Expect = 6e-69
Identities = 153/320 (47%), Positives = 204/320 (63%), Gaps = 3/320 (0%)
Query: 105 PGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKK 163
PGGID +T+L G + DDFF G AALAGGTTM ID V+P G SL FE + +
Sbjct: 1 PGGIDVNTYLQKPSQGMTSADDFFQGTKAALAGGTTMIIDHVVPEPGSSLLTSFEKWHEA 60
Query: 164 AKN-SCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFK 222
A SC DY H+ IT W + V +E+EV+V++KG+NSF+ +MAYK + ++D L E F
Sbjct: 61 ADTKSCCDYSLHVDITSWYDGVREELEVLVQDKGVNSFQVYMAYKDLYQMSDSQLYEAFT 120
Query: 223 RCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFV 282
K LGA+ +VHAENGD + + QKR++E+GITGPEGHALSRP LE EA RAI +A +
Sbjct: 121 FLKGLGAVILVHAENGDLIAQEQKRILEMGITGPEGHALSRPEELEAEAVFRAIAIAGRI 180
Query: 283 NTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPP 342
N P+Y+ VMS A + IA ARK G V GEP+ + L D + W ++ AA +V SPP
Sbjct: 181 NCPVYITKVMSKSAADIIALARKKGPLVFGEPIAASLGTDGTHYWSKNWAKAAAFVTSPP 240
Query: 343 IRASGHNKALQAALAT-GILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVW 401
+ +L G LQ+ G+ HC +++ QKA G D+F IP GVNGIEERM +VW
Sbjct: 241 LSPDPTTPDYLTSLLACGDLQVTGSGHCPYSTAQKAVGKDNFTLIPEGVNGIEERMTVVW 300
Query: 402 DTMVESGQISVTDYVRLTST 421
D V +G++ +V +TST
Sbjct: 301 DKAVATGKMDENQFVAVTST 320
|
| >d1ynya2 c.1.9.6 (A:53-384) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} Length = 332 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Bacillus sp. AR9 [TaxId: 301298]
Score = 204 bits (520), Expect = 4e-63
Identities = 146/319 (45%), Positives = 193/319 (60%), Gaps = 4/319 (1%)
Query: 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA 164
GGIDPHTHL M F G+ T DDFF+G AA GGTT +DF + G SL + + +KA
Sbjct: 1 GGIDPHTHLDMPFGGTVTADDFFTGTRAAAFGGTTSIVDFCLTKKGESLKSAIATWHEKA 60
Query: 165 K-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKR 223
+ + +DYGFH+ I + ++ V +E+E ++ +GI S K FMAYK F +DE L + +
Sbjct: 61 RGKAVIDYGFHLMIAEANDQVLEELESVISSEGITSLKVFMAYKNVFQADDETLFKTLVK 120
Query: 224 CKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN 283
K LGAL VHAENGD + K+ + G T P HA +RPP EGEAT RAI L
Sbjct: 121 AKELGALVQVHAENGDVLDYLTKKALAEGNTDPIYHAYTRPPEAEGEATGRAIALTALAG 180
Query: 284 TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPI 343
+ LYVVHV A++ IA+AR+ G V GE L LD S + DF AKYV SPP+
Sbjct: 181 SQLYVVHVSCASAVQRIAEAREKGWNVYGETCPQYLALDVSIMDQPDF-EGAKYVWSPPL 239
Query: 344 RASGHNKALQAALATGILQLVGTDHCAFN-STQKAFGIDDFRKIPNGVNGIEERMHLVWD 402
R + + L +AL GILQ VG+DHC FN QK G DF KIPNG IE+R+ +++
Sbjct: 240 REKWNQEVLWSALKNGILQTVGSDHCPFNFRGQKELGRGDFTKIPNGGPLIEDRLTILYS 299
Query: 403 TMVESGQISVTDYVRLTST 421
V G+IS+ +V ++ST
Sbjct: 300 EGVRQGRISLNQFVDISST 318
|
| >d1nfga2 c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} Length = 330 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Burkholderia pickettii [TaxId: 329]
Score = 190 bits (483), Expect = 1e-57
Identities = 130/319 (40%), Positives = 183/319 (57%), Gaps = 6/319 (1%)
Query: 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA 164
GGID HTH+ +++ D F + AA GGTT +DF G SL ++ A
Sbjct: 1 GGIDVHTHVETVSFNTQSADTFATATVAAACGGTTTIVDFCQQDRGHSLAEAVAKWDGMA 60
Query: 165 K-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKR 223
S +DYG+H+ + + V +E+EV+ + GI SFK FMAY+G MI+D L++ +
Sbjct: 61 GGKSAIDYGYHIIVLDPTDSVIEELEVL-PDLGITSFKVFMAYRGMNMIDDVTLLKTLDK 119
Query: 224 CKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN 283
G+L MVHAENGDA + + + G T P HALSRPP +E EAT RA+ LAE VN
Sbjct: 120 AVKTGSLVMVHAENGDAADYLRDKFVAEGKTAPIYHALSRPPRVEAEATARALALAEIVN 179
Query: 284 TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPI 343
P+Y+VHV +++EE+ +A+ G R + E L L L DF AKYV +PP
Sbjct: 180 APIYIVHVTCEESLEEVMRAKSRGVRALAETCTHYLYLTKEDLERPDF-EGAKYVFTPPA 238
Query: 344 RASGHNKALQAALATGILQLVGTDHCAFN-STQKAFGIDDFRKIPNGVNGIEERMHLVWD 402
RA + L AL G+ + V +DHC++ K G +DFR IPNG G+EER+ +V+
Sbjct: 239 RAKKDHDVLWNALRNGVFETVSSDHCSWLFKGHKDRGRNDFRAIPNGAPGVEERLMMVY- 297
Query: 403 TMVESGQISVTDYVRLTST 421
V G+IS+T +V L +T
Sbjct: 298 QGVNEGRISLTQFVELVAT 316
|
| >d2fvka2 c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidine amidohydrolase Pyd2 species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Score = 190 bits (483), Expect = 4e-57
Identities = 102/371 (27%), Positives = 160/371 (43%), Gaps = 56/371 (15%)
Query: 106 GGIDPHTHLAME-FMGSETIDDFFSGQAAALAGGTTMHIDF-----VIPINGSLTAGFE- 158
GGID H H+ + + +D +A+AGGTT + F +L +
Sbjct: 1 GGIDAHVHVDEPLKLLGDVVDTMEHATRSAVAGGTTTVVAFSTQDVSKKGPSALAESVKL 60
Query: 159 -AYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM-------VKEKGINSFKFFMAYKGSF 210
E + DYG H+ + + ++ + E++ + G++S K FM Y
Sbjct: 61 DVDEYSEQTLYCDYGLHLILFQIEKPSVEARELLDVQLQAAYNDYGVSSVKMFMTYP-GL 119
Query: 211 MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGE 270
I+D ++ + G M+HAENGD V + + E G+T H +SRP ++EGE
Sbjct: 120 QISDYDIMSAMYATRKNGFTTMLHAENGDMVKWMIEALEEQGLTDAYYHGVSRPSIVEGE 179
Query: 271 ATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSD 330
AT RAI LA ++TP+ VHV S A E I +A+ G +V E +L D+
Sbjct: 180 ATNRAITLATTMDTPILFVHVSSPQAAEVIKQAQTKGLKVYAETCPQYALLSDAITRCHH 239
Query: 331 FVT--------------------------AAKYVMSPPIRASGHNKALQAALATGILQLV 364
+KY+ SPPIR G K++ + G +V
Sbjct: 240 HGEVESYGVGIDLSSISESPFTNPDDRFIGSKYICSPPIRPEGTQKSIWKGMNNGTFTIV 299
Query: 365 GTDHCAFNSTQKAFGID-------------DFRKIPNGVNGIEERMHLVWDTMVESGQI- 410
G+DHC++N +K +FR IPNG+ G+ RM L++D G +
Sbjct: 300 GSDHCSYNYYEKTSTASKHRAFDPENNKNGEFRYIPNGLPGVCTRMPLLYDYGYLRGNLT 359
Query: 411 SVTDYVRLTST 421
S+ V + T
Sbjct: 360 SMMKLVEIQCT 370
|
| >d1gkpa2 c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [TaxId: 275]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Thermus sp. [TaxId: 275]
Score = 176 bits (447), Expect = 2e-52
Identities = 114/316 (36%), Positives = 172/316 (54%), Gaps = 4/316 (1%)
Query: 108 IDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK- 165
IDPH H+ + FM + D +G AAL GGTT +I+ P G++ ++ KA+
Sbjct: 2 IDPHVHIYLPFMATFAKDTHETGSKAALMGGTTTYIEMCCPSRNDDALEGYQLWKSKAEG 61
Query: 166 NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCK 225
NS DY FHMA++K+DE ++ +V GI+SFK F++YK F ++D + + + K
Sbjct: 62 NSYCDYTFHMAVSKFDEKTEGQLREIV-ADGISSFKIFLSYKNFFGVDDGEMYQTLRLAK 120
Query: 226 SLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP 285
LG + H EN + V Q++++ G TGPE H SRP +E E T R E
Sbjct: 121 ELGVIVTAHCENAELVGRLQQKLLSEGKTGPEWHEPSRPEAVEAEGTARFATFLETTGAT 180
Query: 286 LYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRA 345
YVVH+ A++ A+ G + E V+ +LD ++ A KY+MSPP+R
Sbjct: 181 GYVVHLSCKPALDAAMAAKARGVPIYIESVIPHFLLDKTYAERGGV-EAMKYIMSPPLRD 239
Query: 346 SGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV 405
+ K L ALA G + VGTDHC F++ QK G + F IPNG+ IE+R++L++ V
Sbjct: 240 KRNQKVLWDALAQGFIDTVGTDHCPFDTEQKLLGKEAFTAIPNGIPAIEDRVNLLYTYGV 299
Query: 406 ESGQISVTDYVRLTST 421
G++ + +V ST
Sbjct: 300 SRGRLDIHRFVDAAST 315
|
| >d1gkra2 c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} Length = 325 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: L-hydantoinase species: Arthrobacter aurescens [TaxId: 43663]
Score = 146 bits (369), Expect = 4e-41
Identities = 74/318 (23%), Positives = 126/318 (39%), Gaps = 8/318 (2%)
Query: 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFV--IPINGSLTAGFEAYEKK 163
G +D H H+ ++ F +A GG T I+ P +L A E ++
Sbjct: 1 GVVDEHVHI-IDMDLKNRYGRFELDSESAAVGGITTIIEMPITFPPTTTLDAFLEKKKQA 59
Query: 164 AKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKR 223
+ +D+ + + +M G S ++D L E F+
Sbjct: 60 GQRLKVDFALYGGGVPGNLPEIRKMHDA-GAVGFKSMMAASVPGMFDAVSDGELFEIFQE 118
Query: 224 CKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN 283
+ G++ +VHAEN + QK++ G + S+P E EA RA+ L +
Sbjct: 119 IAACGSVIVVHAENETIIQALQKQIKAAGGKDMAAYEASQPVFQENEAIQRALLLQKEAG 178
Query: 284 TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPI 343
L V+HV + D +E I +A+ GQ V E L + ++PP+
Sbjct: 179 CRLIVLHVSNPDGVELIHQAQSEGQDVHCESGPQYLNITTDDAERIGP----YMKVAPPV 234
Query: 344 RASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDT 403
R++ N L L G++ +G+DH K G D K NG G+E + ++
Sbjct: 235 RSAEMNIRLWEQLENGLIDTLGSDHGGHPVEDKEPGWKDVWKAGNGALGLETSLPMMLTN 294
Query: 404 MVESGQISVTDYVRLTST 421
V G++S+ V +
Sbjct: 295 GVNKGRLSLERLVEVMCE 312
|
| >d1xrta2 c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Two-domain dihydroorotase species: Aquifex aeolicus [TaxId: 63363]
Score = 137 bits (344), Expect = 1e-37
Identities = 66/318 (20%), Positives = 117/318 (36%), Gaps = 21/318 (6%)
Query: 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDF--VIPINGSLTAGFEAYEKK 163
G ID H HL G +D SG A+AGG T + P + T +K
Sbjct: 1 GFIDIHVHLRD--PGQTYKEDIESGSRCAVAGGFTTIVCMPNTNPPIDNTTVVNYILQKS 58
Query: 164 AKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKR 223
ITK + +KE G +F GS +++ ++ + +
Sbjct: 59 KSVGLCRVLPTGTITKGRKGKEIADFYSLKEAGCVAFT----DDGSPVMDSSVMRKALEL 114
Query: 224 CKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN 283
LG M H E+ + +I G SR P E R LA+
Sbjct: 115 ASQLGVPIMDHCED----DKLAYGVINEGEVSALLGLSSRAPEAEEIQIARDGILAQRTG 170
Query: 284 TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPI 343
+++ HV + ++E I ++ G ++ E + L+ + + +S A ++PP+
Sbjct: 171 GHVHIQHVSTKLSLEIIEFFKEKGVKITCEVNPNHLLFTEREVLNSG----ANARVNPPL 226
Query: 344 RASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDT 403
R AL + GI+ TDH + +K + G+ G++ +
Sbjct: 227 RKKEDRLALIEGVKRGIIDCFATDHAPHQTFEK----ELVEFAMPGIIGLQTALPSAL-E 281
Query: 404 MVESGQISVTDYVRLTST 421
+ G IS+ + + +
Sbjct: 282 LYRKGIISLKKLIEMFTI 299
|
| >d1i0da_ c.1.9.3 (A:) Phosphotriesterase (parathion hydrolase, PTE) {Pseudomonas diminuta [TaxId: 293]} Length = 331 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Phosphotriesterase-like domain: Phosphotriesterase (parathion hydrolase, PTE) species: Pseudomonas diminuta [TaxId: 293]
Score = 79.0 bits (193), Expect = 8e-17
Identities = 42/329 (12%), Positives = 74/329 (22%), Gaps = 39/329 (11%)
Query: 106 GGIDPHTHLAMEFMGSETIDDFFSG-------------QAAALAGGTTMHIDFVIPINGS 152
G H H+ G F G + A AG T+ I
Sbjct: 16 GFTLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVRGLRRARAAGVRTIVDVSTFDIGRD 75
Query: 153 LTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI 212
++ E + G + S E + I + +
Sbjct: 76 VSLLAEVSRAADVHIVAATGLWFDPPLSMRLRSVEELTQFFLREIQYGIEDTGIRAGIIK 135
Query: 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEAT 272
+ L A A TG + +GE
Sbjct: 136 VATTGKATPFQELVLKAAARASLA-----------------TGVPVTTHTAASQRDGEQQ 178
Query: 273 TRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFV 332
+ + + H D + + G + + + + + S
Sbjct: 179 AAIFESEGLSPSRVCIGHSDDTDDLSYLTALAARGYLIGLDHIPHSAIGLEDNASASA-- 236
Query: 333 TAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNG 392
+ S RA + I LV D S+ +D +G
Sbjct: 237 --LLGIRSWQTRALLIKALIDQGYMKQI--LVSNDWLFGFSSYVTNIMDVMD--RVNPDG 290
Query: 393 IEERMHLVWDTMVESGQISVTDYVRLTST 421
+ V + E G + +T T
Sbjct: 291 MAFIPLRVIPFLREKG-VPQETLAGITVT 318
|
| >d2fvka1 b.92.1.3 (A:2-56,A:441-541) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} Length = 156 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Score = 62.7 bits (152), Expect = 2e-12
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFV---MPGGID 109
++IK G + A A++ V +G V + +I+ +V+DA G F+ +PG D
Sbjct: 3 YDLIIKNGIICTASDIYAAEIAVNNGKVQLIAASIDPSLGSEVIDAEGAFITPILPGVSD 62
Query: 110 PHTHLAMEF 118
+
Sbjct: 63 ADLVIWYPD 71
|
| >d1onwa1 b.92.1.7 (A:1-62,A:347-389) Isoaspartyl dipeptidase {Escherichia coli [TaxId: 562]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Isoaspartyl dipeptidase domain: Isoaspartyl dipeptidase species: Escherichia coli [TaxId: 562]
Score = 61.2 bits (148), Expect = 2e-12
Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 13/110 (11%)
Query: 51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGI 108
++ L++G + + I DV V +G ++AV NI + V+D +G+ + P +
Sbjct: 6 AAGFTLLQGAHLYAPEDRGICDVLVANGKIIAVASNIPSDIVPNCTVVDLSGQILCPEIL 65
Query: 109 DPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFE 158
+ + I+ A G M V + FE
Sbjct: 66 PGNDADLLVMTPELRIEQ-------VYARGKLM----VKDGKACVKGTFE 104
|
| >d2ftwa1 b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} Length = 150 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Dictyostelium discoideum [TaxId: 44689]
Score = 60.8 bits (147), Expect = 7e-12
Identities = 35/150 (23%), Positives = 58/150 (38%), Gaps = 16/150 (10%)
Query: 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPG-GIDP 110
+ ILIK GTVVN +DV VE+GI+ + NI + +KV+DAT K ++ G D
Sbjct: 1 TGTILIKNGTVVNDDRYFKSDVLVENGIIKEISKNIEPKEGIKVVDATDKLLLIDVGCDG 60
Query: 111 HTHLAMEFMGSETIDD---------FFSGQAAALAGGTTMHIDFVIPINGSLT--AGFEA 159
+ D F G TT+ ++ + L+ G
Sbjct: 61 DIVIWDPNQSKTISKDTHHHAVDFNIFEGIKVTGIAVTTIVAGNIVWSDNKLSCVKGSGR 120
Query: 160 YEKKAKNSCMDYGFHMAITKWDEVVSDEME 189
+ + I + D+V ++ +
Sbjct: 121 FVPRPPFG----PVFDGIEQRDKVRNELLR 146
|
| >d2r8ca1 b.92.1.9 (A:2-57,A:369-414) Uncharacterized protein EAJ56179 {Unidentified organism [TaxId: 32644]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Uncharacterized protein EAJ56179 species: Unidentified organism [TaxId: 32644]
Score = 58.1 bits (140), Expect = 2e-11
Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 53 SKILIKGGTVVNAHHQQI---ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGID 109
+ L + G +++ H + ++ +EDG + V + V+D GK +MP +
Sbjct: 1 TTFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKSSNAHVIDVKGKTIMPRIVP 60
Query: 110 PHTHLAMEFMG 120
+ G
Sbjct: 61 GAHADVLVVDG 71
|
| >d1kcxa1 b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidinase related protein-1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 58.7 bits (142), Expect = 4e-11
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPG-GIDPHT 112
++LI+GG ++N ADVY+EDG++ + N+ V VK ++A G+ V+ G D
Sbjct: 2 RLLIRGGRIINDDQSFYADVYLEDGLIKQIGENLIVPGGVKTIEANGRMVIIAVGSDADV 61
Query: 113 HL 114
+
Sbjct: 62 VI 63
|
| >d1gkpa1 b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermus sp. [TaxId: 275]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Thermus sp. [TaxId: 275]
Score = 57.3 bits (138), Expect = 6e-11
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
+LIK G ++ A + AD+Y E + + N+ +V+DATGK+V PG
Sbjct: 2 LLIKNGEIITADSRYKADIYAEGETITRIGQNLEAPPGTEVIDATGKYVFPGADLVVYD- 60
Query: 115 AMEFMGSETIDDFFS 129
++ G+ ++
Sbjct: 61 -PQYRGTISVKTQHV 74
|
| >d2eg6a1 c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli [TaxId: 562]} Length = 343 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Dihydroorotase domain: Dihydroorotase species: Escherichia coli [TaxId: 562]
Score = 58.5 bits (140), Expect = 5e-10
Identities = 30/315 (9%), Positives = 68/315 (21%), Gaps = 33/315 (10%)
Query: 109 DPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDF--VIPINGSLTAGFEAYEKKAKN 166
D H HL M + + I + P + AY ++ +
Sbjct: 11 DWHLHLRDGDMLKTVV--------PYTSEIYGRAIVMPNLAPPVTT-VEAAVAYRQRILD 61
Query: 167 SCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKS 226
+ + S + + + F Y + N +
Sbjct: 62 AVPAGHDFTPLMTCYLTDSLDPNELERGFNEGVFTAAKLYPANATTNSSHGVTSVDAIMP 121
Query: 227 LGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286
L + + G+ + +
Sbjct: 122 --VLERMEKIGMPLLVHGEV---------THADIDIFDREARFIESVMEPLRQRLTALKV 170
Query: 287 YVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRAS 346
H+ + DA + + R +R+ L+ + + V Y + R
Sbjct: 171 VFEHITTKDAADYV---RDGNERLAATITPQHLMFNRNH-MLVGGVRPHLYCLPILKRNI 226
Query: 347 GHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVE 406
+ + +GTD + + G + E
Sbjct: 227 HQQALRELVASGFNRVFLGTDSAPHARHR-----KESSCGCAGCFNAPTALGSYATVFEE 281
Query: 407 SGQISVTDYVRLTST 421
++ + S
Sbjct: 282 MN--ALQHFEAFCSV 294
|
| >d1ynya1 b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} Length = 127 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus sp. AR9 [TaxId: 301298]
Score = 54.6 bits (131), Expect = 6e-10
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
K I+GGTVV A ADV +E VVA+ ++V + +DATG +V+P +
Sbjct: 1 KKWIRGGTVVTAADTYQADVLIEGERVVAIGHQLSVNGA-EEIDATGCYVIPIAVGSDAD 59
Query: 114 LAMEFMG 120
+ +
Sbjct: 60 IVIFDPH 66
|
| >d1m7ja1 b.92.1.6 (A:7-61) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]} Length = 55 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: D-aminoacylase domain: N-acyl-D-aminoacid amidohydrolase species: Alcaligenes faecalis [TaxId: 511]
Score = 51.7 bits (124), Expect = 1e-09
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 55 ILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMP 105
++ GGTV++ + ADV V + AV + +D GK V P
Sbjct: 4 YILSGGTVIDGTNAPGRLADVGVRGDRIAAVGDLSA-SSARRRIDVAGKVVSP 55
|
| >d1gkra1 b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: L-hydantoinase species: Arthrobacter aurescens [TaxId: 43663]
Score = 49.6 bits (118), Expect = 3e-08
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPG---GIDPH 111
+++K +V++ AD+ V+DG V A+ + + + + +DA GKFVMP G D
Sbjct: 4 VIVKNCRLVSSDGITEADILVKDGKVAAISADTSDVEASRTIDAGGKFVMPTLQVGSDAD 63
Query: 112 THLA-MEFMGSETIDDFFSGQAAALAGGTTMH 142
+ ++ F S + G +
Sbjct: 64 LLILDLDIDTKVDASQFRSLHKYSPFDGMPVT 95
|
| >d1k1da1 b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 49.7 bits (118), Expect = 3e-08
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
+IK GT+V A A + ++DG + + N+ +V+DA G +V P +
Sbjct: 2 TKIIKNGTIVTATDTYEAHLLIKDGKIAMIGQNLE-EKGAEVIDAKGCYVFPIVVGSDAD 60
Query: 114 LAMEFMGSETI 124
L + E +
Sbjct: 61 LVIFDPNIERV 71
|
| >d2qs8a1 b.92.1.9 (A:7-63,A:374-412) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Xaa-Pro dipeptidase species: Alteromonas macleodii [TaxId: 28108]
Score = 46.9 bits (111), Expect = 2e-07
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 53 SKILIKGGTVVNAHHQQI---ADVYVEDGIVVAVQPN-INVGDDVKVLDATGKFVMPGGI 108
SK LI G +++ Q+ + ++ I+ ++ I+ D +D V+P
Sbjct: 1 SKTLIHAGKLIDGKSDQVQSRISIVIDGNIISDIKKGFISSNDFEDYIDLRDHTVLPSIE 60
Query: 109 DPHTHLAMEFMGSETID 125
+ G+ D
Sbjct: 61 SGKLADLIAVKGNPIED 77
|
| >d1ejxc1 b.92.1.1 (C:1002-1129,C:1423-1475) alpha-Subunit of urease {Klebsiella aerogenes [TaxId: 28451]} Length = 181 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: alpha-Subunit of urease domain: alpha-Subunit of urease species: Klebsiella aerogenes [TaxId: 28451]
Score = 48.7 bits (116), Expect = 2e-07
Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 16/106 (15%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNIN----------VGDDVKVLDATGKFVM 104
+++ +V+ AD+ V+DG + A+ N +G +V+ A GK V
Sbjct: 67 LVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVT 126
Query: 105 PGGIDPHTH-----LAMEFMGSETIDDFFSGQ-AAALAGGTTMHID 144
G I+ + F G + G A A G I
Sbjct: 127 AGSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIP 172
|
| >d1onwa2 c.1.9.13 (A:63-346) Isoaspartyl dipeptidase, catalytic domain {Escherichia coli [TaxId: 562]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Isoaspartyl dipeptidase, catalytic domain domain: Isoaspartyl dipeptidase, catalytic domain species: Escherichia coli [TaxId: 562]
Score = 46.3 bits (108), Expect = 3e-06
Identities = 37/323 (11%), Positives = 71/323 (21%), Gaps = 58/323 (17%)
Query: 106 GGIDPHTHLAME-FMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKA 164
G ID H HL T + G T +
Sbjct: 1 GFIDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVG-------------------- 40
Query: 165 KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRC 224
+ T + + + +M + + + K
Sbjct: 41 ----------LLGTDSISRHPESLLAKTRALNEEGISAWMLTGAYHVPSRTITGSVEKDV 90
Query: 225 KSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNT 284
+ + V D A L A +R L
Sbjct: 91 AIIDRVIGVKCAISDHR----------------SAAPDVYHLANMAAESRVGGLLGGKPG 134
Query: 285 PLYVVHVMSMDAMEEIAKARKAGQRVI-----GEPVVSGLVLDDSWLWHSDFVTAA-KYV 338
S A++ I + I + + + + + T
Sbjct: 135 VTVFHMGDSKKALQPIYDLLENCDVPISKLLPTHVNRNVPLFEQALEFARKGGTIDITSS 194
Query: 339 MSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMH 398
+ P+ + A + +D G GV G E +
Sbjct: 195 IDEPVAPAEGIARAVQAGIPLARVTLSSDGNGSQPFFDDEGNLT----HIGVAGFETLLE 250
Query: 399 LVWDTMVESGQISVTDYVRLTST 421
V +V+ S++D +R ++
Sbjct: 251 TVQ-VLVKDYDFSISDALRPLTS 272
|
| >d1nfga1 b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} Length = 127 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Burkholderia pickettii [TaxId: 329]
Score = 43.1 bits (101), Expect = 7e-06
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
I+IK GT+V A AD+ ++DG + + + + + +DA G++V P + +
Sbjct: 3 IIIKNGTIVTADGISRADLGIKDGKITQIGGALGPAE--RTIDAAGRYVFPIAVGSDADI 60
Query: 115 AM 116
+
Sbjct: 61 VL 62
|
| >d1yrra1 b.92.1.5 (A:1-53,A:351-382) N-acetylglucosamine-6-phosphate deacetylase, NagA {Escherichia coli [TaxId: 562]} Length = 85 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA domain: N-acetylglucosamine-6-phosphate deacetylase, NagA species: Escherichia coli [TaxId: 562]
Score = 39.3 bits (91), Expect = 5e-05
Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 2/78 (2%)
Query: 55 ILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
+ G + H V + DG++ +V P + +++ G + P
Sbjct: 2 YALTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELPPEIEQRSLNGAILSPTLAAGKVA 61
Query: 114 LAMEF-MGSETIDDFFSG 130
F + +G
Sbjct: 62 NLTAFTPDFKITKTIVNG 79
|
| >d2p9ba1 b.92.1.10 (A:9-70,A:395-450) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]} Length = 118 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Uncharacterized protein BL1453 species: Bifidobacterium longum [TaxId: 216816]
Score = 39.0 bits (90), Expect = 1e-04
Identities = 16/96 (16%), Positives = 27/96 (28%), Gaps = 7/96 (7%)
Query: 54 KILIKGGTVV----NAHHQQIADVYVE-DGIVVAV--QPNINVGDDVKVLDATGKFVMPG 106
+ T+V + + V DG + V ++ + LD TGK VM
Sbjct: 5 PFALAHATIVTGDKAGTILRNMTIVVGADGRIEQVAPSIETSIPAEYHYLDGTGKIVMLE 64
Query: 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMH 142
L + + + AG
Sbjct: 65 VGKSADLLVLNANPLDDLRALEHPALVIAAGHPVWR 100
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 427 | |||
| d2ftwa2 | 334 | Dihydropyrimidine amidohydrolase Pyd2 {Dictyosteli | 100.0 | |
| d1kcxa2 | 334 | Dihydropyrimidinase related protein-1 {Mouse (Mus | 100.0 | |
| d1ynya2 | 332 | D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | 100.0 | |
| d1nfga2 | 330 | D-hydantoinase {Burkholderia pickettii [TaxId: 329 | 100.0 | |
| d1gkpa2 | 335 | D-hydantoinase {Thermus sp. [TaxId: 275]} | 100.0 | |
| d2fvka2 | 384 | Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Sacc | 100.0 | |
| d1gkra2 | 325 | L-hydantoinase {Arthrobacter aurescens [TaxId: 436 | 100.0 | |
| d1xrta2 | 310 | Two-domain dihydroorotase {Aquifex aeolicus [TaxId | 100.0 | |
| d2eg6a1 | 343 | Dihydroorotase {Escherichia coli [TaxId: 562]} | 99.98 | |
| d1i0da_ | 331 | Phosphotriesterase (parathion hydrolase, PTE) {Pse | 99.83 | |
| d2i9ua2 | 310 | Guanine deaminase {Clostridium acetobutylicum [Tax | 99.79 | |
| d1p1ma2 | 281 | Hypothetical protein TM0936, probable catalytic do | 99.79 | |
| d2uz9a2 | 313 | Guanine deaminase {Human (Homo sapiens) [TaxId: 96 | 99.79 | |
| d2paja2 | 336 | Hypothetical protein GOS_1943094 {Environmental sa | 99.67 | |
| d1onwa1 | 105 | Isoaspartyl dipeptidase {Escherichia coli [TaxId: | 99.63 | |
| d2imra2 | 308 | Hypothetical protein DR0824 {Deinococcus radiodura | 99.62 | |
| d1yrra1 | 85 | N-acetylglucosamine-6-phosphate deacetylase, NagA | 99.62 | |
| d1ejxc1 | 181 | alpha-Subunit of urease {Klebsiella aerogenes [Tax | 99.6 | |
| d2p9ba1 | 118 | Uncharacterized protein BL1453 {Bifidobacterium lo | 99.57 | |
| d1onwa2 | 284 | Isoaspartyl dipeptidase, catalytic domain {Escheri | 99.56 | |
| d2fvka1 | 156 | Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Sacc | 99.49 | |
| d2r8ca1 | 102 | Uncharacterized protein EAJ56179 {Unidentified org | 99.48 | |
| d1m7ja3 | 358 | N-acyl-D-aminoacid amidohydrolase, catalytic domai | 99.47 | |
| d1nfga1 | 127 | D-hydantoinase {Burkholderia pickettii [TaxId: 329 | 99.46 | |
| d1ynya1 | 127 | D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | 99.42 | |
| d1gkra1 | 126 | L-hydantoinase {Arthrobacter aurescens [TaxId: 436 | 99.41 | |
| d1k1da1 | 128 | D-hydantoinase {Bacillus stearothermophilus [TaxId | 99.35 | |
| d2qs8a1 | 96 | Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: | 99.35 | |
| d2ooda2 | 325 | Guanine deaminase {Bradyrhizobium japonicum [TaxId | 99.34 | |
| d2puza2 | 301 | Imidazolonepropionase {Agrobacterium tumefaciens [ | 99.33 | |
| d1gkpa1 | 123 | D-hydantoinase {Thermus sp. [TaxId: 275]} | 99.32 | |
| d2bb0a2 | 300 | Imidazolonepropionase {Bacillus subtilis [TaxId: 1 | 99.32 | |
| d2q09a2 | 301 | Probable 4-imidazolone-5-propanoate amidohydrolase | 99.31 | |
| d2vhla2 | 301 | N-acetylglucosamine-6-phosphate deacetylase, NagA, | 99.3 | |
| d1ra0a2 | 320 | Cytosine deaminase catalytic domain {Escherichia c | 99.29 | |
| d1m7ja1 | 55 | N-acyl-D-aminoacid amidohydrolase {Alcaligenes fae | 99.23 | |
| d1bf6a_ | 291 | Phosphotriesterase homology protein {Escherichia c | 99.21 | |
| d2icsa2 | 267 | Putative adenine deaminase EF0837 {Enterococcus fa | 99.2 | |
| d1kcxa1 | 142 | Dihydropyrimidinase related protein-1 {Mouse (Mus | 99.19 | |
| d2vhla1 | 91 | N-acetylglucosamine-6-phosphate deacetylase, NagA | 99.15 | |
| d2p9ba2 | 324 | Uncharacterized protein BL1453 {Bifidobacterium lo | 99.09 | |
| d2ftwa1 | 150 | Dihydropyrimidine amidohydrolase Pyd2 {Dictyosteli | 99.07 | |
| d2qs8a2 | 310 | Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: | 98.98 | |
| d3be7a2 | 303 | Zn-dependent arginine carboxypeptidase {Unidentifi | 98.93 | |
| d2r8ca2 | 311 | Uncharacterized protein EAJ56179 {Unidentified org | 98.91 | |
| d4ubpc1 | 180 | alpha-Subunit of urease {Bacillus pasteurii [TaxId | 98.83 | |
| d1yrra2 | 297 | N-acetylglucosamine-6-phosphate deacetylase, NagA, | 98.76 | |
| d1xrta1 | 112 | Two-domain dihydroorotase {Aquifex aeolicus [TaxId | 98.53 | |
| d1e9yb1 | 180 | alpha-Subunit of urease {Helicobacter pylori [TaxI | 98.5 | |
| d1j6oa_ | 260 | Hypothetical protein TM0667 {Thermotoga maritima [ | 98.45 | |
| d1xwya1 | 260 | Deoxyribonuclease TatD (MttC) {Escherichia coli [T | 98.42 | |
| d1yixa1 | 265 | Putative deoxyribonuclease YcfH {Escherichia coli | 98.38 | |
| d1zzma1 | 259 | Putative deoxyribonuclease YjjV {Escherichia coli | 98.35 | |
| d4ubpc2 | 390 | alpha-subunit of urease, catalytic domain {Bacillu | 98.33 | |
| d1ejxc2 | 385 | alpha-subunit of urease, catalytic domain {Klebsie | 98.19 | |
| d2puza1 | 103 | Imidazolonepropionase {Agrobacterium tumefaciens [ | 98.15 | |
| d1e9yb2 | 389 | alpha-subunit of urease, catalytic domain {Helicob | 98.14 | |
| d1o12a2 | 288 | N-acetylglucosamine-6-phosphate deacetylase, NagA, | 97.61 | |
| d1o12a1 | 76 | N-acetylglucosamine-6-phosphate deacetylase, NagA | 97.21 | |
| d2q09a1 | 103 | Probable 4-imidazolone-5-propanoate amidohydrolase | 97.18 | |
| d1a4ma_ | 349 | Adenosine deaminase (ADA) {Mouse (Mus musculus) [T | 96.82 | |
| d2amxa1 | 357 | Adenosine deaminase (ADA) {Plasmodium yoelii [TaxI | 96.69 | |
| d2icsa1 | 101 | Putative adenine deaminase EF0837 {Enterococcus fa | 96.57 | |
| d2ffia1 | 271 | Putative 2-pyrone-4,6-dicarboxylic acid hydrolase | 95.95 | |
| d1ra0a1 | 103 | Cytosine deaminase {Escherichia coli [TaxId: 562]} | 95.66 | |
| d2f6ka1 | 306 | Putative amidohydrolase LP2961 {Lactobacillus plan | 94.59 | |
| d2dvta1 | 325 | Thermophilic reversible gamma-resorcylate decarbox | 93.49 | |
| d1o12a2 | 288 | N-acetylglucosamine-6-phosphate deacetylase, NagA, | 90.95 | |
| d2ooda1 | 140 | Guanine deaminase {Bradyrhizobium japonicum [TaxId | 88.61 | |
| d2gwga1 | 342 | 4-oxalomesaconate hydratase LigJ {Rhodopseudomonas | 87.11 | |
| d3be7a1 | 95 | Zn-dependent arginine carboxypeptidase {Unidentifi | 85.12 |
| >d2ftwa2 c.1.9.6 (A:60-393) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidine amidohydrolase Pyd2 species: Dictyostelium discoideum [TaxId: 44689]
Probab=100.00 E-value=7.3e-55 Score=413.81 Aligned_cols=322 Identities=56% Similarity=0.935 Sum_probs=289.9
Q ss_pred ccccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCC-cHHHHHHHHHHHh-ccccceeceeccccCCCh
Q 014320 105 PGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDE 182 (427)
Q Consensus 105 PG~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 182 (427)
|||||+|+|+..+..|..++|++.+++++|+++||||++||.++.+. ...+.++...+.+ ..+.+++.++.......+
T Consensus 1 PG~ID~HvH~reP~~G~~~kEd~~tgs~AAa~GGvTtv~~mpn~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~ 80 (334)
T d2ftwa2 1 PGGIDTHTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFVIPTRGQSLLEAYDQWKKWADEKVNCDYSLHVAITWWSE 80 (334)
T ss_dssp ECEEEEEECTTCEETTEECSSCHHHHHHHHHHTTEEEEEEEECCCTTCCHHHHHHHHHHHHHTTCSSEEEEEEECCSCCH
T ss_pred CCeEcceecCCCCCCCCcccccHHHHHHHHHhCCCeEEEECCCCCCCCCcHHHHHHHHHHHhcCCcceeeEEEeecCcch
Confidence 99999999999876677889999999999999999999999765544 5677777766655 457889999887777777
Q ss_pred hhHHHHHHHHHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCccccccc
Q 014320 183 VVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALS 262 (427)
Q Consensus 183 ~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~ 262 (427)
...+++..+.+..|+..+|+|+........+++.+.++++.+++.|.++.+|+|+........+.+.+.|..+++.|..+
T Consensus 81 ~~~~e~~~l~~~~g~~~~k~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~E~~~~~~~~~~~~~~~g~~~~~~~~~~ 160 (334)
T d2ftwa2 81 QVSREMEILVKERGVNSFKCFMAYKNSFMVTDQEMYHIFKRCKELGAIAQVHAENGDMVFEGQKKMLEMGITGPEGHELS 160 (334)
T ss_dssp HHHHHHHHHHHHSCCCEEEEESSCTTTTBCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCSTHHHHHH
T ss_pred hhhHhHHHHHHhcCccccceeeccccccccccHHHHHHHHHHhhcCCceeecchhHHHHhhcchhhhccCCCCccccccc
Confidence 77788888876789999999998766667788999999999999999999999999988888888889999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCC
Q 014320 263 RPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPP 342 (427)
Q Consensus 263 ~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pp 342 (427)
||..+|..++.+.+.+++..++++|++|+++.++++.++++|+.|++|++++|||||+++++.+.+.++..+..++++||
T Consensus 161 rp~~aE~~~v~r~~~la~~~~~~lhi~HiSt~~~~~~i~~ak~~G~~vt~e~~ph~L~l~~~~~~~~d~~~~~~~~~~PP 240 (334)
T d2ftwa2 161 RPEALEAEATNRAIVIADSVCTPVYIVHVQSIGAADVICKHRKEGVRVYGEPIAAGLGVDGSHMWNHDWRHAAAFVMGPP 240 (334)
T ss_dssp SCTHHHHHHHHHHHHHHHHHTCCEEECSCCCHHHHHHHHHHHHTTCCEEECCBHHHHHCCGGGGGCSSHHHHHTTCCSSC
T ss_pred CcHHHHHHHHHHHHHHHHhhccceeeccccchhhhhhHHHhcccCCceeeccccceeeccHHHHhccchhhccceEeecc
Confidence 99999999999999999999999999999999999999999999999999999999999998876544444567889999
Q ss_pred CCCc-ccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHch
Q 014320 343 IRAS-GHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTST 421 (427)
Q Consensus 343 lr~~-~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~ 421 (427)
+|++ .++++||+++.+|.+++|+|||+||+.++|..+.++|+++++|++|+|+.+|++|+.+|++++||++++++++|.
T Consensus 241 lR~~~~d~~~L~~~l~~G~Id~iaSDHaPh~~e~K~~~~~~f~~a~~Gi~glet~lpll~~~~v~~g~lsl~~~v~~~s~ 320 (334)
T d2ftwa2 241 IRPDPRTKGVLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFTKIPNGVNGVEDRMSIVWENGVNTGKLTWCQFVRATSS 320 (334)
T ss_dssp CCCCTTHHHHHHHHHHHTSSCCCBCCBCCCCHHHHGGGTTCGGGSCCCBCCTTTHHHHHHHHHTTTTSSCHHHHHHHHTH
T ss_pred ccccHhhhhhHHHHhhCCCccceecCCCCCCHHHHhcCCCChhhCCCCccCHHHHHHHHHHHHHHcCCCCHHHHHHHHhH
Confidence 9976 468999999999999999999999999999877789999999999999999999988999999999999999999
Q ss_pred hhhcC
Q 014320 422 EWGRL 426 (427)
Q Consensus 422 npA~~ 426 (427)
||||+
T Consensus 321 nPAki 325 (334)
T d2ftwa2 321 ERARI 325 (334)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99986
|
| >d1kcxa2 c.1.9.6 (A:67-400) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidinase related protein-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5e-54 Score=408.31 Aligned_cols=322 Identities=48% Similarity=0.810 Sum_probs=287.2
Q ss_pred ccccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCC-cHHHHHHHHHHHh-ccccceeceeccccCCCh
Q 014320 105 PGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDE 182 (427)
Q Consensus 105 PG~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 182 (427)
||+||+|+|+..+..|..++|++.+++++|+++||||++||.++.+. ...+.++...+.+ ..+.+++.+++.....++
T Consensus 1 PG~ID~HvH~reP~~G~~~kEd~~tgs~AAa~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~~s~~d~~~~~~~~~~~~ 80 (334)
T d1kcxa2 1 PGGIDVNTYLQKPSQGMTSADDFFQGTKAALAGGTTMIIDHVVPEPGSSLLTSFEKWHEAADTKSCCDYSLHVDITSWYD 80 (334)
T ss_dssp ECEEEEEECTTCEETTEECSSCHHHHHHHHHHTTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHCSSEEEEEEEECCCCT
T ss_pred CCeEeeeecCCCCCCCCcccchHHHHHHHHHcCCceEEEECCCCCCCCCCHHHHHHHHHHhcccCcceeeEeeeeccCCc
Confidence 99999999999886677889999999999999999999999765443 5666777666555 458999999988877777
Q ss_pred hhHHHHHHHHHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCccccccc
Q 014320 183 VVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALS 262 (427)
Q Consensus 183 ~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~ 262 (427)
....++.++.+..|+.++|+|+.+...+..+++.+.++++.+++.+.++.+|+|+.+.+....+.+.+.|..++..|..+
T Consensus 81 ~~~~el~~l~~~~g~~~~ki~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~H~Ed~~l~~~~~~~~~~~g~~~~~~~~~~ 160 (334)
T d1kcxa2 81 GVREELEVLVQDKGVNSFQVYMAYKDLYQMSDSQLYEAFTFLKGLGAVILVHAENGDLIAQEQKRILEMGITGPEGHALS 160 (334)
T ss_dssp THHHHHHHHHHTTCCCEEEEESCSTTTTCCCHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHTTCCSTHHHHHH
T ss_pred chHHHHHHHHHhccCceeeeeeccCCCcccCHHHHHHHHHHHhccCceeEEecCCHHHHhccccchhhcCCcchhhccCC
Confidence 77788888875678999999998877777899999999999999999999999999888777778888999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCC
Q 014320 263 RPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPP 342 (427)
Q Consensus 263 ~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pp 342 (427)
||..+|..++.+++.+++.+|+++|++|+++.++++.++++|++|..+++++||||++++...+...++..+..++++||
T Consensus 161 rp~~aE~~ai~r~~~la~~~g~~~hi~HiSt~~~ve~i~~ak~~g~~vt~e~~~~~l~l~~~~~~~~~~~~~~~~~~~pP 240 (334)
T d1kcxa2 161 RPEELEAEAVFRAIAIAGRINCPVYITKVMSKSAADIIALARKKGPLVFGEPIAASLGTDGTHYWSKNWAKAAAFVTSPP 240 (334)
T ss_dssp SCTHHHHHHHHHHHHHHHHHTCCEEEEEECCHHHHHHHHHHHHHSCCEEEEEBHHHHHCCGGGGGCSSHHHHHHTCCSSC
T ss_pred CCHHHHHHHHHHHHHHHhhcCCceeeccccchHHHHHHHHHhccccceeeccchhheeecccccccCChhHhcceEeeec
Confidence 99999999999999999999999999999999999999999999999999999999999988776544333345666777
Q ss_pred CC-CcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHch
Q 014320 343 IR-ASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTST 421 (427)
Q Consensus 343 lr-~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~ 421 (427)
+| ++.++++||+++++|.+++|+|||+||+.++|..+.++|+.+|+|++|+|+.+|++|+.+|.+++||++++++++|.
T Consensus 241 lr~~~~d~eaL~~~l~~G~Id~I~SDHaP~~~e~K~~~~~~f~~ap~Gi~g~e~~l~~llt~~V~~g~isl~~~v~~~s~ 320 (334)
T d1kcxa2 241 LSPDPTTPDYLTSLLACGDLQVTGSGHCPYSTAQKAVGKDNFTLIPEGVNGIEERMTVVWDKAVATGKMDENQFVAVTST 320 (334)
T ss_dssp CCSCTTHHHHHHHHHHHTSSCCCBCCBCCCCHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTTTSSCHHHHHHHHTH
T ss_pred cCchhhhHHHHHHHhhcCCcceEecCCCCCCHHHhccCCCChhhCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 76 67789999999999999999999999999999877779999999999999999999988999999999999999999
Q ss_pred hhhcC
Q 014320 422 EWGRL 426 (427)
Q Consensus 422 npA~~ 426 (427)
||||+
T Consensus 321 nPA~i 325 (334)
T d1kcxa2 321 NAAKI 325 (334)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99986
|
| >d1ynya2 c.1.9.6 (A:53-384) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Bacillus sp. AR9 [TaxId: 301298]
Probab=100.00 E-value=5.9e-53 Score=401.07 Aligned_cols=320 Identities=45% Similarity=0.715 Sum_probs=286.0
Q ss_pred cccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCC-cHHHHHHHHHHHh-ccccceeceeccccCCChh
Q 014320 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEV 183 (427)
Q Consensus 106 G~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 183 (427)
|+||+|+|+..+..|..++|++.+++++|+.+||||++||.++.+. ...+.++...+.. ....++++++......++.
T Consensus 1 G~ID~HvH~r~p~~g~~~~ed~~tgs~AAa~GGvTtv~~mpnt~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~~ 80 (332)
T d1ynya2 1 GGIDPHTHLDMPFGGTVTADDFFTGTRAAAFGGTTSIVDFCLTKKGESLKSAIATWHEKARGKAVIDYGFHLMIAEANDQ 80 (332)
T ss_dssp CEEEEEECTTCEETTEECSCCHHHHHHHHHHTTEEEEEEEECCCSSCCHHHHHHHHHHHHTTTCSSEEEEEEECSCCCHH
T ss_pred CceeCccCCCCCCCCCcccccHHHHHHHHHhCCCcEEEECCCCCCCCCCHHHHHHHHHHHhccCccceeeEEEEeccccc
Confidence 8999999999876677889999999999999999999999765444 6677777776665 4578899988877766777
Q ss_pred hHHHHHHHHHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccC
Q 014320 184 VSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSR 263 (427)
Q Consensus 184 ~~~~~~~l~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~ 263 (427)
...++..+....|+..+|+|+.+......+.+.+.++++.+++.|+++.+|+|+.+.+....+.....|..++..|..++
T Consensus 81 ~~~el~~~~~~~g~~~~k~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~h~Ed~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (332)
T d1ynya2 81 VLEELESVISSEGITSLKVFMAYKNVFQADDETLFKTLVKAKELGALVQVHAENGDVLDYLTKKALAEGNTDPIYHAYTR 160 (332)
T ss_dssp HHHHHHHHHHTSCCCEEEEESCSTTTTCCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCSTTHHHHTS
T ss_pred hhHHHHHHHhhhcccceeeeeccccccccCHHHHHHHHHHHhhcCCEEeechhhHHHHHHHHHHHHhcCCCCchhccccc
Confidence 77788888766799999999988766677899999999999999999999999998888777888889999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCC
Q 014320 264 PPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPI 343 (427)
Q Consensus 264 p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~ppl 343 (427)
|..+|..++.+.+.+++++|+++|++|+++.++++.++.+|++|++|++++|||||+++++.+.+.++ .|.+++++||+
T Consensus 161 p~~aE~~ai~r~~~la~~~g~~~hi~hiSt~~~~~~i~~ak~~g~~vt~e~~ph~L~l~~~~~~~~~~-~g~~~k~~PPL 239 (332)
T d1ynya2 161 PPEAEGEATGRAIALTALAGSQLYVVHVSCASAVQRIAEAREKGWNVYGETCPQYLALDVSIMDQPDF-EGAKYVWSPPL 239 (332)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCEEECSCCSHHHHHHHHHHHHTTCCEEEEECHHHHHCCGGGGCCSSS-GGGGGCCSSCC
T ss_pred hhhHHHHHHHHHHHhhhhhcccccccccccchHHHHHHHHHHhCCCceeccccccccCCHHHHhhhhc-cCceeEecCcc
Confidence 99999999999999999999999999999999999999999999999999999999999988754333 24689999999
Q ss_pred CCcccHHHHHHHHhcCCceEEecCCCCCChhhh-hcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchh
Q 014320 344 RASGHNKALQAALATGILQLVGTDHCAFNSTQK-AFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTE 422 (427)
Q Consensus 344 r~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~-~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~n 422 (427)
|++.||++||+++++|++++|+|||+||+...| ....++|+.+++|++|+|+.+|++|+.++++++||++++++++|.|
T Consensus 240 Rs~~dr~aL~~al~~G~id~i~SDHaP~~~~~kk~~~~~~f~~a~~G~~g~e~~l~~~~~~~v~~g~lsl~~~v~~~s~n 319 (332)
T d1ynya2 240 REKWNQEVLWSALKNGILQTVGSDHCPFNFRGQKELGRGDFTKIPNGGPLIEDRLTILYSEGVRQGRISLNQFVDISSTK 319 (332)
T ss_dssp CCTTHHHHHHHHHHTTSSCEECCCBCCCCTTTTGGGGTTCGGGSCCCBCCTTTHHHHHHHHTTTTTSSCHHHHHHHHTHH
T ss_pred ccHHHHHHHHHHHhcCCeeEEEecCCCCCHHHHhhccCCCcccCCCccchHHHHHHHHHHHHHHcCCCCHHHHHHHHhHH
Confidence 999999999999999999999999999997654 3345699999999999999999999889999999999999999999
Q ss_pred hhcC
Q 014320 423 WGRL 426 (427)
Q Consensus 423 pA~~ 426 (427)
|||+
T Consensus 320 PAki 323 (332)
T d1ynya2 320 AAKL 323 (332)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9986
|
| >d1nfga2 c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Burkholderia pickettii [TaxId: 329]
Probab=100.00 E-value=5.6e-53 Score=400.36 Aligned_cols=318 Identities=41% Similarity=0.666 Sum_probs=279.8
Q ss_pred cccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCC-cHHHHHHHHHHHh-ccccceeceeccccCCChh
Q 014320 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEV 183 (427)
Q Consensus 106 G~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 183 (427)
|+||.|+|+..+..+..++|++.+++++|+.+||||++||.+..+. ...+.++...+.. .++.++++++.......+.
T Consensus 1 G~ID~HvH~r~p~~g~~~~Ed~~tgs~AAa~GGvTtv~~mpn~~p~~~~~e~~~~~~~~a~~~s~~d~~~~~~~~~~~~~ 80 (330)
T d1nfga2 1 GGIDVHTHVETVSFNTQSADTFATATVAAACGGTTTIVDFCQQDRGHSLAEAVAKWDGMAGGKSAIDYGYHIIVLDPTDS 80 (330)
T ss_dssp CEEEEEECCSCEETTEECSCCHHHHHHHHHHTTEEEEEEEEECCTTSCHHHHHHHHHHHHTTTCSSEEEEEEECSSCCHH
T ss_pred CcEeCccCCCCCCCCccccchHHHHHHHHHcCCCEEEEECCCCCCCCCCHHHHHHHHHHHhcCCeeeecceEEEeccchh
Confidence 8999999999874455678999999999999999999999765444 5666666665555 4588899988777666666
Q ss_pred hHHHHHHHHHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccC
Q 014320 184 VSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSR 263 (427)
Q Consensus 184 ~~~~~~~l~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~ 263 (427)
..+++..+. ..|+.++|+|+...+....+...+.++++.+.+.|..+.+|+|+...+....+.+...|..+++.|..+|
T Consensus 81 ~~~el~~~~-~~Gv~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~E~~~~~~~~~~~~~~~g~~~~~~~~~~r 159 (330)
T d1nfga2 81 VIEELEVLP-DLGITSFKVFMAYRGMNMIDDVTLLKTLDKAVKTGSLVMVHAENGDAADYLRDKFVAEGKTAPIYHALSR 159 (330)
T ss_dssp HHHHTTTGG-GGTCCEEEEESSSTTTTBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHHTTCCSTHHHHHTS
T ss_pred hHHHHhhhh-hhcccceeeeccccccCCCCcHHHHHHHHHHHhcCCceeechHHHHHHHHHhhhhhccCCcCchhccccc
Confidence 666776665 7899999999988777778899999999999999999999999998888888888899999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCC
Q 014320 264 PPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPI 343 (427)
Q Consensus 264 p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~ppl 343 (427)
|..+|..++.+++.+++..++++|++|+++.++++.|+++|++|++|++++|||||+|+++++.+.++. +.+++++|||
T Consensus 160 p~~aE~~av~r~~~la~~~~~~lhi~HiSt~~~~~~i~~ak~~g~~vt~Et~ph~L~l~~~d~~~~~~~-~~~~k~~PPL 238 (330)
T d1nfga2 160 PPRVEAEATARALALAEIVNAPIYIVHVTCEESLEEVMRAKSRGVRALAETCTHYLYLTKEDLERPDFE-GAKYVFTPPA 238 (330)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCEEECCCCSHHHHHHHHHHHHHTCCEEECEEGGGGTCCGGGGGCTTTG-GGGGCCSSCC
T ss_pred ChHHHHHHHHHHHHHHHHhCCeeeechhcchHHHHHHHHHHhcCCcccccccchhhhhhhhhhhccccc-CceeeecCcC
Confidence 999999999999999999999999999999999999999999999999999999999999887543222 3688999999
Q ss_pred CCcccHHHHHHHHhcCCceEEecCCCCCChhh-hhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchh
Q 014320 344 RASGHNKALQAALATGILQLVGTDHCAFNSTQ-KAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTE 422 (427)
Q Consensus 344 r~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~-~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~n 422 (427)
|++.|+++||+++++|.+++|+|||+||+... +....++|+.+|+|++|+|+.+|++| +++.+++|+++++++++|.|
T Consensus 239 R~~~d~~aL~~~l~dG~Id~i~SDHaP~~~~~~~~~~~~~f~~ap~G~~gle~~lp~l~-~~v~~~~l~l~~~v~~~S~n 317 (330)
T d1nfga2 239 RAKKDHDVLWNALRNGVFETVSSDHCSWLFKGHKDRGRNDFRAIPNGAPGVEERLMMVY-QGVNEGRISLTQFVELVATR 317 (330)
T ss_dssp CCHHHHHHHHHHHHTTCCSCEECCBCCCCTTTTTTTTTTCGGGSCCCBCCTTTHHHHHH-HHHHTTSSCHHHHHHHHTHH
T ss_pred CcHHHHHHHhhhhcCCceeeecCCCCCccchhhHhhccCCHhHCCCCcCHHHHHHHHHH-HHHHcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999998642 23334689999999999999999999 58999999999999999999
Q ss_pred hhcC
Q 014320 423 WGRL 426 (427)
Q Consensus 423 pA~~ 426 (427)
|||+
T Consensus 318 PAki 321 (330)
T d1nfga2 318 PAKV 321 (330)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9986
|
| >d1gkpa2 c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [TaxId: 275]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Thermus sp. [TaxId: 275]
Probab=100.00 E-value=4e-52 Score=396.01 Aligned_cols=318 Identities=36% Similarity=0.608 Sum_probs=284.3
Q ss_pred ccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCC-cHHHHHHHHHHHh-ccccceeceeccccCCChhh
Q 014320 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVV 184 (427)
Q Consensus 107 ~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 184 (427)
|||+|+|+..+..+...+|++.+++++|+.+||||++||.++.+. ...+.++..++.+ .+..+++.++......+...
T Consensus 1 lID~HvH~~~p~~~~~~ked~~sgs~AAa~GGvTtv~dmpn~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~~~ 80 (335)
T d1gkpa2 1 FIDPHVHIYLPFMATFAKDTHETGSKAALMGGTTTYIEMCCPSRNDDALEGYQLWKSKAEGNSYCDYTFHMAVSKFDEKT 80 (335)
T ss_dssp EEEEEECSSCEETTEECSCCHHHHHHHHHHTTEEEEEEEECCCTTSCHHHHHHHHHHHHTTTCSSEEEEEEECCCCCTTH
T ss_pred CcCcccccCCCCCCCccccHHHHHHHHHHhCCCeEEEECCCCCCCCChHHHHHHHHHHHhcCCccceeeEEEEecccccc
Confidence 799999998875455578999999999999999999999765443 5666776665555 45889999988777766667
Q ss_pred HHHHHHHHHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCC
Q 014320 185 SDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRP 264 (427)
Q Consensus 185 ~~~~~~l~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p 264 (427)
..++.++. ..|+.++|+|+.+.+.+..++..+.++++.+++.|..+.+|+|+..............|..++..|+.++|
T Consensus 81 ~~el~~l~-~~G~~~~k~~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~h~ed~~l~~~~~~~~~~~~~~~~~~~~~~~p 159 (335)
T d1gkpa2 81 EGQLREIV-ADGISSFKIFLSYKNFFGVDDGEMYQTLRLAKELGVIVTAHCENAELVGRLQQKLLSEGKTGPEWHEPSRP 159 (335)
T ss_dssp HHHHHHHH-HTTCCEEEEEECSTTTTBCCHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHTTCCSGGGTTTTSC
T ss_pred HHHHHHHH-hhhccccccccccCCCccCCHHHHHHHHHHhhhcCCEEEEcCCcHHHHHHHHhhhhcccccCccccccchh
Confidence 78888887 68999999999988778889999999999999999999999999888777777788889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCC
Q 014320 265 PLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIR 344 (427)
Q Consensus 265 ~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr 344 (427)
...|..++.+.+.++++.++++|++|+++.++++.++.+|++|++|++++||||++++++++.+.+.. +.+++++||+|
T Consensus 160 ~~~E~~av~r~~~la~~~~~~~hi~HiSt~~~l~~i~~ak~~g~~it~e~~~~hl~l~~~~~~~~~~~-~~~~k~~PPlR 238 (335)
T d1gkpa2 160 EAVEAEGTARFATFLETTGATGYVVHLSCKPALDAAMAAKARGVPIYIESVIPHFLLDKTYAERGGVE-AMKYIMSPPLR 238 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEECSCCSHHHHHHHHHHHHTTCCEEEEEEHHHHHCCGGGGGSCHHH-HHTTCCSSCCC
T ss_pred hhhHHHHHHHHHHHHHHhCcccchhhhhhhhhhhhhhhhhhcCceEEeecccchhhcCHHHHhcCCch-hcceecccCCC
Confidence 99999999999999999999999999999999999999999999999999999999998877542211 24678999999
Q ss_pred CcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhh
Q 014320 345 ASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWG 424 (427)
Q Consensus 345 ~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA 424 (427)
++.++++||+++.+|++++|+|||+||+.++|..+.++|+.+++|++|+|+.+|++|+.+|++++||++++++++|.|||
T Consensus 239 s~~d~~~L~~al~~G~id~i~SDHaP~~~e~K~~~~~~~~~~~~G~~gle~~lplll~~~V~~g~lsl~~~v~~~S~nPA 318 (335)
T d1gkpa2 239 DKRNQKVLWDALAQGFIDTVGTDHCPFDTEQKLLGKEAFTAIPNGIPAIEDRVNLLYTYGVSRGRLDIHRFVDAASTKAA 318 (335)
T ss_dssp CTHHHHHHHHHHHTTSSCEEECCBCCCCHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTSSSCCHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHHhcCCccEEEecCCCCCHHHhccCCCChhhCCCChhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999877789999999999999999999988999999999999999999999
Q ss_pred cC
Q 014320 425 RL 426 (427)
Q Consensus 425 ~~ 426 (427)
|+
T Consensus 319 ri 320 (335)
T d1gkpa2 319 KL 320 (335)
T ss_dssp HH
T ss_pred HH
Confidence 85
|
| >d2fvka2 c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidine amidohydrolase Pyd2 species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Probab=100.00 E-value=1.4e-50 Score=389.91 Aligned_cols=320 Identities=32% Similarity=0.520 Sum_probs=264.1
Q ss_pred cccccccccccCcC-CCCChhhHHHHHHHHHcCCceEEecCcCCCCC-----cHHHHHHH-HHHH-hccccceeceeccc
Q 014320 106 GGIDPHTHLAMEFM-GSETIDDFFSGQAAALAGGTTMHIDFVIPING-----SLTAGFEA-YEKK-AKNSCMDYGFHMAI 177 (427)
Q Consensus 106 G~ID~H~H~~~~~~-g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~-----~~~~~~~~-~~~~-~~~~~~~~~~~~~~ 177 (427)
|+||+|+|+.++.. ...++|++.+++++|+.+||||++||....+. ...+.++. ..+. ..++.++|+++...
T Consensus 1 G~ID~HvH~rePg~~~~~~~ed~~tgs~AAa~GGvTtvi~mp~~~p~~~~~~~~~~~~~~~~~~~a~~~~~vdy~~~~~~ 80 (384)
T d2fvka2 1 GGIDAHVHVDEPLKLLGDVVDTMEHATRSAVAGGTTTVVAFSTQDVSKKGPSALAESVKLDVDEYSEQTLYCDYGLHLIL 80 (384)
T ss_dssp CEEECCBCCCCTTCTTSCCSCCHHHHHHHHHHTTEEEEEEEEECCTTCCSTTHHHHHHHHHHHHHTTSCCSSEEEEEEEC
T ss_pred CceeCCcCCCCCCCCCCcccchHHHHHHHHHcCCceEEEECCCCCCCCCCHHHHHHHHHHHHHHHHhcCccceeeEEEEE
Confidence 89999999999822 12678899999999999999999999654322 22333322 2222 24588999988655
Q ss_pred cCCChhh--HHHH---HHH--HHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHH
Q 014320 178 TKWDEVV--SDEM---EVM--VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIE 250 (427)
Q Consensus 178 ~~~~~~~--~~~~---~~l--~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~ 250 (427)
....... .+++ ..+ ....|+.++|+|+.+.+ ...+.+.+.++++.+++.|.++.+|+|+.+.+....+.+.+
T Consensus 81 ~~~~~~~~~~~el~~~~~~~~~~~~Gv~~~k~f~~~~~-~~~~~~~l~~~l~~~~~~g~~v~~H~Ed~~~~~~~~~~~~~ 159 (384)
T d2fvka2 81 FQIEKPSVEARELLDVQLQAAYNDYGVSSVKMFMTYPG-LQISDYDIMSAMYATRKNGFTTMLHAENGDMVKWMIEALEE 159 (384)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHCCCEEEEESSSTT-TBCCHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHH
T ss_pred eCCCCccchHHHHHhHHHHHHcccCcccccceeccccc-cccCHHHHHHHHHHHHhcCCceeeccccHHHHHHHHHHHhh
Confidence 4433211 1111 111 12579999999998754 34688889999999999999999999999998888888999
Q ss_pred cCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccC--
Q 014320 251 LGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWH-- 328 (427)
Q Consensus 251 ~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~-- 328 (427)
.|..+++.|..+||..+|..++.+++.+++++|+++||+|+++.+++++|+++|++|++|++|+|||||+|+++.+..
T Consensus 160 ~g~~~~~~~~~~rP~~aE~~av~r~~~la~~~g~~lhi~HiSt~~~ve~I~~ak~~G~~Vt~Et~ph~L~l~~~~~~~~~ 239 (384)
T d2fvka2 160 QGLTDAYYHGVSRPSIVEGEATNRAITLATTMDTPILFVHVSSPQAAEVIKQAQTKGLKVYAETCPQYALLSDAITRCHH 239 (384)
T ss_dssp TTCCSTTHHHHTSCHHHHHHHHHHHHHHHHHTTCCEEECSCCCHHHHHHHHHHHHHTCCEEEEECHHHHHCCGGGGSCC-
T ss_pred cCCCChhhcccccccchhhHHHHHHHHHHHhcCceEEecccccchhhHHHHHhhhcCCCEEEEeChHHhhccchhhcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999875421
Q ss_pred -----------------------CC-cccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcC-----
Q 014320 329 -----------------------SD-FVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFG----- 379 (427)
Q Consensus 329 -----------------------~~-~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~----- 379 (427)
++ ...|.++|++||||++.||++||++|++|.+++|+|||+||+.++|...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~~~k~~PPLR~~~dr~aL~~~l~dG~Id~IaSDHaP~~~~eK~~~~~~~~ 319 (384)
T d2fvka2 240 HGEVESYGVGIDLSSISESPFTNPDDRFIGSKYICSPPIRPEGTQKSIWKGMNNGTFTIVGSDHCSYNYYEKTSTASKHR 319 (384)
T ss_dssp -------CCSCCGGGSSSSTTTCTTCTTGGGGGCCSSCCCCTTSHHHHHHHHHHTSCSEECCCBCCCBSSCCSSTTBGGG
T ss_pred cccccccccccccccccccccccccccccCceeEEcCCCCCHHHHHHHHHHhhCCceeEEecCCCCCCHHHhcccccccc
Confidence 01 1235789999999999999999999999999999999999998877532
Q ss_pred --------CCCCccCCCCCchhhHhHHHHHHHHHhcCCC-CHHHHHHHHchhhhcC
Q 014320 380 --------IDDFRKIPNGVNGIEERMHLVWDTMVESGQI-SVTDYVRLTSTEWGRL 426 (427)
Q Consensus 380 --------~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l-~l~~~v~~~t~npA~~ 426 (427)
.++|+.+|+|++|+|+++|++|+.++.++++ +++++++++|.||||+
T Consensus 320 ~~~~~~~~~~df~~ap~G~~gle~~lpll~~~~v~~~~~~sl~~lv~~~s~nPAki 375 (384)
T d2fvka2 320 AFDPENNKNGEFRYIPNGLPGVCTRMPLLYDYGYLRGNLTSMMKLVEIQCTNPAKV 375 (384)
T ss_dssp GEEGGGTEESCGGGSCCCBCCTTTHHHHHHHHTTTTTSSSCHHHHHHHHTHHHHHH
T ss_pred cccccccccCccccCCCCCccHHHHHHHHHHHHHhcCCCCCHHHHHHHHhHHHHHH
Confidence 2379999999999999999999888887775 8999999999999985
|
| >d1gkra2 c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: L-hydantoinase species: Arthrobacter aurescens [TaxId: 43663]
Probab=100.00 E-value=2.1e-50 Score=382.87 Aligned_cols=311 Identities=25% Similarity=0.297 Sum_probs=270.0
Q ss_pred cccccccccccCcCCCCChh-hHHHHHHHHHcCCceEEecCcCCCCC-cHHHHHHHHHH-HhccccceeceeccccCCCh
Q 014320 106 GGIDPHTHLAMEFMGSETID-DFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEK-KAKNSCMDYGFHMAITKWDE 182 (427)
Q Consensus 106 G~ID~H~H~~~~~~g~~~~e-~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 182 (427)
|+||+|+|+.++ |..+++ ++.+++++|+.+||||++||.++.+. ...+.++.+.+ ...+..+++.++.......
T Consensus 1 G~ID~HvH~rep--g~~~ke~~~~tgs~AAa~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~- 77 (325)
T d1gkra2 1 GVVDEHVHIIDM--DLKNRYGRFELDSESAAVGGITTIIEMPITFPPTTTLDAFLEKKKQAGQRLKVDFALYGGGVPGN- 77 (325)
T ss_dssp CEEEEEEECCCG--GGTTTSCCHHHHHHHHHHHTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEEEEEEECCTTC-
T ss_pred CcEeCCcCCCCC--CCCCcccHHHHHHHHHHccCCceEEECCCCCCCcCCHHHHHHHHHHhccCCcccccccccccccc-
Confidence 899999999988 666666 59999999999999999999765443 44455544444 3456889998887665443
Q ss_pred hhHHHHHHHHHHcCCCeEEEEEecCC---CccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccc
Q 014320 183 VVSDEMEVMVKEKGINSFKFFMAYKG---SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGH 259 (427)
Q Consensus 183 ~~~~~~~~l~~~~g~~~ik~~~~~~~---~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~ 259 (427)
...+..+. ..|+.+++.++.... ....++..+.++++.+++.|..+.+|+|+.+.+....+.....|..+++.|
T Consensus 78 --~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~H~E~~~l~~~~~~~~~~~g~~~~~~~ 154 (325)
T d1gkra2 78 --LPEIRKMH-DAGAVGFKSMMAASVPGMFDAVSDGELFEIFQEIAACGSVIVVHAENETIIQALQKQIKAAGGKDMAAY 154 (325)
T ss_dssp --HHHHHHHH-HTTCCEEEEESSCSBTTTBCBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHHTTCCSHHHH
T ss_pred --HHHHHhhh-hcccceeccccccccCCccccccHHHHHHHHHHHHhcCCceEeccCcHHHHHHHHHHhhhcCCcccccc
Confidence 33344444 678999998876432 234578889999999999999999999999888777778888999999999
Q ss_pred cccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEE
Q 014320 260 ALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVM 339 (427)
Q Consensus 260 ~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~ 339 (427)
..++|..+|..++.+.+.+++..++++|++|+++.++++.++++|++|.+|++++|||||+++++++.. + +..+++
T Consensus 155 ~~~rp~~aE~~~v~r~~~la~~~~~~~hi~hiSs~~~l~~i~~ak~~g~~vt~et~ph~L~lt~~~~~~--~--~~~~k~ 230 (325)
T d1gkra2 155 EASQPVFQENEAIQRALLLQKEAGCRLIVLHVSNPDGVELIHQAQSEGQDVHCESGPQYLNITTDDAER--I--GPYMKV 230 (325)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHCCEEEECCCCSHHHHHHHHHHHHTTCCEEEEECHHHHSCCGGGHHH--H--GGGGCC
T ss_pred cccCchHHHHHHHHHHHHHhhhcCcceeccccccHHHHHhhhhhhhcCCceEEeecccccccchhhhhc--c--Cccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999887742 2 368999
Q ss_pred cCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHH
Q 014320 340 SPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLT 419 (427)
Q Consensus 340 ~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~ 419 (427)
+||+|++.||++||+++++|.+++|+|||+||+.++|..+.++|+.+++|++|+|+++|++|+.++.+++|+++++++++
T Consensus 231 ~PPlR~~~Dr~aL~~al~~G~id~i~SDHaPh~~~~K~~~~~~~~~a~~G~~g~e~~lp~~~~~~v~~g~lsl~~~v~~~ 310 (325)
T d1gkra2 231 APPVRSAEMNIRLWEQLENGLIDTLGSDHGGHPVEDKEPGWKDVWKAGNGALGLETSLPMMLTNGVNKGRLSLERLVEVM 310 (325)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCCCEECCCEECCCGGGTGGGGTCGGGSCCCBCCTTTHHHHHHHHTGGGTSSCHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHhcCcceEEecCCCCCCHHHhccCCCccccCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999997766799999999999999999999889999999999999999
Q ss_pred chhhhcC
Q 014320 420 STEWGRL 426 (427)
Q Consensus 420 t~npA~~ 426 (427)
|.||||+
T Consensus 311 s~nPAki 317 (325)
T d1gkra2 311 CEKPAKL 317 (325)
T ss_dssp THHHHHH
T ss_pred hHHHHHH
Confidence 9999986
|
| >d1xrta2 c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Two-domain dihydroorotase species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=4.8e-46 Score=350.88 Aligned_cols=301 Identities=21% Similarity=0.231 Sum_probs=206.9
Q ss_pred cccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCC-cHHHHHHHHHHHh-ccccceeceeccccCC-Ch
Q 014320 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKW-DE 182 (427)
Q Consensus 106 G~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~ 182 (427)
|+||+|+|+.++ |...+|++.+++++|+.+||||++||.+..+. ...+.++...+.. ....+++.++...... ..
T Consensus 1 G~ID~HvHlr~P--G~~~~ed~~tgs~AAa~GGvTtv~~mPnt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (310)
T d1xrta2 1 GFIDIHVHLRDP--GQTYKEDIESGSRCAVAGGFTTIVCMPNTNPPIDNTTVVNYILQKSKSVGLCRVLPTGTITKGRKG 78 (310)
T ss_dssp CEEEEEECCCTT--TCTTTCCHHHHHHHHHHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEEEECBCSBGGGCS
T ss_pred CcEeCcccCCCC--CccccccHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHhhccCCcccccceeeccCCcc
Confidence 899999999998 88889999999999999999999999765443 3445555555443 2356666655444321 11
Q ss_pred hhHHHHHHHHHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCccccccc
Q 014320 183 VVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALS 262 (427)
Q Consensus 183 ~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~ 262 (427)
+.+.++..+. ..|+..+ . ..+....+...+.++++.+.+.+.++.+|+|+...... +...|...+..|..+
T Consensus 79 ~~~~~~~~~~-~~g~~~f---~-~~~~~~~d~~~l~~~~~~~~~~~~~~~~h~e~~~~~~~----~~~~~~~~~~~~~~~ 149 (310)
T d1xrta2 79 KEIADFYSLK-EAGCVAF---T-DDGSPVMDSSVMRKALELASQLGVPIMDHCEDDKLAYG----VINEGEVSALLGLSS 149 (310)
T ss_dssp SSBCCHHHHH-HHTCCCB---C-CTTSCCCCHHHHHHHHHHHHHHTCEEEECCCGGGGTC--------------------
T ss_pred chhhhhhhcc-cCcEEEE---E-CCCCCccCHHHHHHHHHHhhhhhhhhhhccchhhhhhh----hhhhhhcccccCccc
Confidence 2222344443 4565433 2 33445568999999999999999999999998765533 334456667778889
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCC
Q 014320 263 RPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPP 342 (427)
Q Consensus 263 ~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pp 342 (427)
+|..+|..++.+.+.+++..++++|++|+++.++++.++++++.|++|++++|||||+++++++.. .+..++++||
T Consensus 150 rp~~~E~~ai~r~~~la~~~~~~~~i~HiSt~~~l~~i~~a~~~g~~vt~e~~ph~L~l~~~~~~~----~~~~~k~~Pp 225 (310)
T d1xrta2 150 RAPEAEEIQIARDGILAQRTGGHVHIQHVSTKLSLEIIEFFKEKGVKITCEVNPNHLLFTEREVLN----SGANARVNPP 225 (310)
T ss_dssp ----CHHHHHHHHHHHHHHHCCEEEESCCCSHHHHHHHHHHHHTTCCEEEEECGGGGC----------------------
T ss_pred cchHHHHHHHHHHHHHHhhcCCeeeccccchHHHHHHHHHHHHcCCceecchHHHHhhcccccccc----ccchhhhccc
Confidence 999999999999999999999999999999999999999999999999999999999999887643 2368999999
Q ss_pred CCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchh
Q 014320 343 IRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTE 422 (427)
Q Consensus 343 lr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~n 422 (427)
+|++.||++||+++++|.+++|||||+||+..+|. .|+.+++|++|+|+++|++| .++.+++++++++++++|.|
T Consensus 226 lR~~~d~~aL~~al~~G~id~i~SDHaPh~~~~K~----~~~~~~~G~~g~e~~lp~l~-~~v~~g~l~l~~~v~~~s~n 300 (310)
T d1xrta2 226 LRKKEDRLALIEGVKRGIIDCFATDHAPHQTFEKE----LVEFAMPGIIGLQTALPSAL-ELYRKGIISLKKLIEMFTIN 300 (310)
T ss_dssp ----CCHHHHHHHHHHTCSCEECCCBCCCCC---------------CCCCGGGHHHHHH-HHHHTTSSCHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHHHhcCCCeEEecCCCCCCHHHcc----CcccCCCCceeHHHHHHHHH-HHHHcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999988873 57888999999999999999 68999999999999999999
Q ss_pred hhcC
Q 014320 423 WGRL 426 (427)
Q Consensus 423 pA~~ 426 (427)
|||+
T Consensus 301 pAki 304 (310)
T d1xrta2 301 PARI 304 (310)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9985
|
| >d2eg6a1 c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Dihydroorotase domain: Dihydroorotase species: Escherichia coli [TaxId: 562]
Probab=99.98 E-value=9.5e-32 Score=256.33 Aligned_cols=285 Identities=14% Similarity=0.112 Sum_probs=205.5
Q ss_pred EeccccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCC-cHHHHHHHHHHHh---ccccceeceecccc
Q 014320 103 VMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA---KNSCMDYGFHMAIT 178 (427)
Q Consensus 103 v~PG~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 178 (427)
=+|--.|+|+|+.+ ...++++.+++++|+|+++||.++.+. ...+.++.+++.. ......+.+.....
T Consensus 5 ~~~~~~D~HvH~Re--------g~~~~~t~aa~agG~t~v~~MPNT~Ppi~t~e~~~~~~~ri~~~~~~~~~~~~~~~~~ 76 (343)
T d2eg6a1 5 KIRRPDDWHLHLRD--------GDMLKTVVPYTSEIYGRAIVMPNLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLMTCY 76 (343)
T ss_dssp EEECCCEEEECCCS--------HHHHHHHHHHHHTTCSEEEECCCCSSCCCSHHHHHHHHHHHHHHSCTTCCCEEEEEEE
T ss_pred EECCCCcceEecCC--------CchHhHHHHHHhccCCEEEECCCCCCCCCCHHHHHHHHHHHHHhccccCceeeeeeee
Confidence 45777899999975 244566778899999999999865543 4455554443322 12223333332222
Q ss_pred CCChhhHHHHHHHHHHcC-CCeEEEEEecC----CCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCC
Q 014320 179 KWDEVVSDEMEVMVKEKG-INSFKFFMAYK----GSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGI 253 (427)
Q Consensus 179 ~~~~~~~~~~~~l~~~~g-~~~ik~~~~~~----~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~ 253 (427)
.........+.+.. ..+ ...++.+.... +....+...+....+..+..+..+..|++...
T Consensus 77 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~-------------- 141 (343)
T d2eg6a1 77 LTDSLDPNELERGF-NEGVFTAAKLYPANATTNSSHGVTSVDAIMPVLERMEKIGMPLLVHGEVTH-------------- 141 (343)
T ss_dssp CCTTCCHHHHHHHH-HTTSEEEEEECCCCTTSCTTTCCSCGGGGHHHHHHHHHHTCCEEECCCCCC--------------
T ss_pred ccCCCChhhhhhhh-hccccccccccccchhccccccccchHHHHHHHHHHHHhCchhhhcCcccc--------------
Confidence 22222233344433 233 33444443221 12234566778888999999999999987542
Q ss_pred CCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCccc
Q 014320 254 TGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVT 333 (427)
Q Consensus 254 ~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~ 333 (427)
.+...++.++|..++.+.+.++...++++|++|+++.++++.+ +++|.+|++|+|||||+|+.+++...++.
T Consensus 142 ----~~~~~~~~eae~~~~~~~~~l~~~~~~~~Hi~HiSt~~~v~~i---r~~~~~vt~EvtPHhL~L~~~d~~~~~~~- 213 (343)
T d2eg6a1 142 ----ADIDIFDREARFIESVMEPLRQRLTALKVVFEHITTKDAADYV---RDGNERLAATITPQHLMFNRNHMLVGGVR- 213 (343)
T ss_dssp ----TTSCGGGHHHHHHHHTHHHHHHHCTTCCEEECSCCSHHHHHHH---HTSCTTEEEEECHHHHHCCHHHHHTTSBC-
T ss_pred ----ccccccchhhhhHHHHHHHHHhhccCceEEEEecchhHHHHHH---HhcCCCcceeecCcHHHhhhhhhhcCCCc-
Confidence 1233467778889999999999999999999999999886655 55667899999999999999887544432
Q ss_pred CceeEEcCCCCCcccHHHHHHHHhcCCc-eEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCH
Q 014320 334 AAKYVMSPPIRASGHNKALQAALATGIL-QLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISV 412 (427)
Q Consensus 334 ~~~~~~~pplr~~~~~~~l~~~l~~G~~-~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l 412 (427)
..++++||+|++.|+++||+.+.+|.+ ++++|||+||+.+.| ++..+++|++|+|+.+|+++.. .. +.+++
T Consensus 214 -~~~k~nPPlR~~~d~~~l~~~~~~g~i~d~iatDHaPh~~e~K-----~~~~~~~g~~g~e~~l~l~l~~-~~-~~~~L 285 (343)
T d2eg6a1 214 -PHLYCLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRK-----ESSCGCAGCFNAPTALGSYATV-FE-EMNAL 285 (343)
T ss_dssp -GGGCCSSCCCCHHHHHHHHHHHHTTCTTEEECCCBCCCCHHHH-----SSTTBCCCCCCTTTHHHHHHHH-HH-HTTCG
T ss_pred -cceeeeccccccchhhHHHHHHHcCCCeeeeecCCCCcccccc-----cccccccccCChHHHHHHHHHH-HH-hcCCH
Confidence 467899999999999999988877765 899999999998877 4567899999999999999954 33 35799
Q ss_pred HHHHHHHchhhhcC
Q 014320 413 TDYVRLTSTEWGRL 426 (427)
Q Consensus 413 ~~~v~~~t~npA~~ 426 (427)
+++++++|.||||+
T Consensus 286 ~~lv~~~S~nPaki 299 (343)
T d2eg6a1 286 QHFEAFCSVNGPQF 299 (343)
T ss_dssp GGHHHHHHTHHHHH
T ss_pred HHHHHHHhHhHHHH
Confidence 99999999999986
|
| >d1i0da_ c.1.9.3 (A:) Phosphotriesterase (parathion hydrolase, PTE) {Pseudomonas diminuta [TaxId: 293]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Phosphotriesterase-like domain: Phosphotriesterase (parathion hydrolase, PTE) species: Pseudomonas diminuta [TaxId: 293]
Probab=99.83 E-value=3.6e-22 Score=187.67 Aligned_cols=282 Identities=13% Similarity=0.030 Sum_probs=173.2
Q ss_pred cccccccccccCcCCC--------C----ChhhHHHHHHHHHcCCceEEecCcCCCCC-cHHHHHHHHHHHhccccceec
Q 014320 106 GGIDPHTHLAMEFMGS--------E----TIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYG 172 (427)
Q Consensus 106 G~ID~H~H~~~~~~g~--------~----~~e~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 172 (427)
||||+|+|+.....+. . ..++..+..+++.++|||+++|+...... ......+..++.+.+....++
T Consensus 16 G~~d~H~Hl~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~a~~~GvttvVd~~~~~~~~d~~~l~~~~~~~~~~~~~~~g 95 (331)
T d1i0da_ 16 GFTLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAEVSRAADVHIVAATG 95 (331)
T ss_dssp CSEEEEECSEECCTTHHHHCGGGGSCHHHHHHHHHHHHHHHHHTTCCEEEECCCGGGTCCHHHHHHHHHHHTCEEECEEE
T ss_pred CCEeeeeCcccCcccccccCccccccHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCcCCHHHHHHHHHhcCCCEEEEEE
Confidence 9999999997652211 0 12344455677889999999998533222 333333434444445556666
Q ss_pred eeccccCC-ChhhHHHHHHHHH---Hc-------CCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhH
Q 014320 173 FHMAITKW-DEVVSDEMEVMVK---EK-------GINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAV 241 (427)
Q Consensus 173 ~~~~~~~~-~~~~~~~~~~l~~---~~-------g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~ 241 (427)
++...... .+...+++.++.. .. +...++...... ......+.+++.++.+++.|.++++|+......
T Consensus 96 ~h~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~g~pv~~h~~~~~~~ 174 (331)
T d1i0da_ 96 LWFDPPLSMRLRSVEELTQFFLREIQYGIEDTGIRAGIIKVATTGK-ATPFQELVLKAAARASLATGVPVTTHTAASQRD 174 (331)
T ss_dssp CCSCCCHHHHTCCHHHHHHHHHHHHHTCBTTTTBCCSEEEEECSSS-CCHHHHHHHHHHHHHHHHHCCCEEEECCGGGTH
T ss_pred EecCcCcccCccCHHHHHHHHHHhhhhhhccccCccceeecccccc-ccHHHHHHHHHHHHHHHHhCCeEEeeccchhhh
Confidence 65322110 1112233333221 11 122344443222 111224567888899999999999998543211
Q ss_pred HHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceee
Q 014320 242 FEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVL 321 (427)
Q Consensus 242 ~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~ 321 (427)
...+.+.+..+...+.+++++|++....++.++++++.|..+..++||+++++
T Consensus 175 ---------------------------~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ 227 (331)
T d1i0da_ 175 ---------------------------GEQQAAIFESEGLSPSRVCIGHSDDTDDLSYLTALAARGYLIGLDHIPHSAIG 227 (331)
T ss_dssp ---------------------------HHHHHHHHHHTTCCGGGEEECSGGGCCCHHHHHHHHHTTCEEEECCTTCCCTT
T ss_pred ---------------------------hhhhhhhhhhcccCCcceEEEecCCcchHHHHHHHHhcCCceeecceeeeccc
Confidence 12233344444455678899999876677889999999999999999999987
Q ss_pred CcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCc--eEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHH
Q 014320 322 DDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGIL--QLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHL 399 (427)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~--~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~ 399 (427)
....... .+...++.||.|.+ .+++++.+|.. +.+||||.++.+..+. .++.+..+.|++|++..++.
T Consensus 228 ~~~~~~~----~~~~~~~~~~~r~~----~~~~~l~~g~~d~i~~~tD~p~~~p~~~~--~~~~~~~~~g~~g~~~~l~~ 297 (331)
T d1i0da_ 228 LEDNASA----SALLGIRSWQTRAL----LIKALIDQGYMKQILVSNDWLFGFSSYVT--NIMDVMDRVNPDGMAFIPLR 297 (331)
T ss_dssp CTTCHHH----HHHHCSSCHHHHHH----HHHHHHHTTCGGGEEECCCCCSEECSSST--THHHHHHHHCTTGGGHHHHT
T ss_pred hhhhccc----cCCccCCChhhhHH----HHHHHHHhcCCCCEEECCCCCCccccccc--CCCccccccCCCcHHHHHHH
Confidence 7655421 12344456666554 45555655653 4899999543322110 01223456788999999998
Q ss_pred HHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 400 VWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 400 ~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
++. .+.++++|++++.+++|.||||+
T Consensus 298 ~~~-~~~~~gis~e~i~~i~~~NParl 323 (331)
T d1i0da_ 298 VIP-FLREKGVPQETLAGITVTNPARF 323 (331)
T ss_dssp HHH-HHHHTTCCHHHHHHHHTHHHHHH
T ss_pred HHH-HHHHcCCCHHHHHHHHHHHHHHH
Confidence 885 45567799999999999999986
|
| >d2i9ua2 c.1.9.9 (A:67-376) Guanine deaminase {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.79 E-value=1.8e-18 Score=161.29 Aligned_cols=263 Identities=16% Similarity=0.059 Sum_probs=154.8
Q ss_pred ccccccccccccCcC-CC---------------------CChhhHHH----HHHHHHcCCceEEecCcCCCCCcHHHHHH
Q 014320 105 PGGIDPHTHLAMEFM-GS---------------------ETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFE 158 (427)
Q Consensus 105 PG~ID~H~H~~~~~~-g~---------------------~~~e~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~ 158 (427)
|||||+|+|+.+... |. .+++.++. ....++++||||+.|+...........++
T Consensus 1 PG~vdaH~H~~~~~~rg~~~~~~l~~wl~~~~~p~~~~~~~~d~~~~~~~~~~~e~l~~GtTtv~d~~~~~~~~~~~~~~ 80 (310)
T d2i9ua2 1 PGMNDLHAHASQYKNLGIGMDKELLPWLNNYTFPEEAKFLNVDYAKKTYGRLIKDLIKNGTTRVALFATLHKDSTIELFN 80 (310)
T ss_dssp ECEEEEEEEGGGGGGTTCCCSSCHHHHHHHTHHHHHHGGGSHHHHHHHHHHHHHHHHHTTEEEEEEECCSCHHHHHHHHH
T ss_pred CCCEehhhChhhhhhhhccCCCCHHHHHHHhHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCcceeeeeccchhhhHHHHH
Confidence 999999999865421 10 01111222 23457899999999976432223345556
Q ss_pred HHHHHhccccceecee-----ccccCCChhhHHHHHHHHHH--cCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcE
Q 014320 159 AYEKKAKNSCMDYGFH-----MAITKWDEVVSDEMEVMVKE--KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALA 231 (427)
Q Consensus 159 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~--~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v 231 (427)
...+.+.+..+..... ........+.+++..+.... .....+...+.+++...++++.++.+.+.++++|+++
T Consensus 81 a~~~~gir~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~~~~~~~~a~~~~~~~ 160 (310)
T d2i9ua2 81 MLIKSGIGAYVGKVNMDYNCPDYLTENYITSLNDTEEIILKYKDKSNIVKPIITPRFVPSCSNELMDGLGKLSYKYRLPV 160 (310)
T ss_dssp HHHHHTCEEEEECEECCSSCCTTSCCCHHHHHHHHHHHHHHHTTTCSSEEECBEECCGGGCCHHHHHHHHHHHHHHTCCE
T ss_pred HHHHhCccccccceeccCCccccchhhHHHHHHHHHHHHHHhhccccccceeecccCCCccCHHHHHHHHHHhhccccce
Confidence 6666665544332221 11111122334444444432 2335677888889999999999999999999999999
Q ss_pred EEec-CChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcC-CCEEEEcCCCHHHHHHHHHHhhcCCC
Q 014320 232 MVHA-ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN-TPLYVVHVMSMDAMEEIAKARKAGQR 309 (427)
Q Consensus 232 ~~H~-e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g-~~~~i~H~~~~~~~~~i~~~~~~G~~ 309 (427)
++|+ |+.++.....+ ..|.. +... +........+ .++.+.|+...+. +.++.+++.|+.
T Consensus 161 ~~H~~E~~~e~~~~~~---~~~~~---------~~~~------~~~~~~g~~~~~~~~~~H~~~~~~-~~i~~la~~g~~ 221 (310)
T d2i9ua2 161 QSHLSENLDEIAVVKS---LHKKS---------NFYG------EVYDKFGLFGNTPTLMAHCIHSSK-EEINLIKRNNVT 221 (310)
T ss_dssp EEEESCCHHHHHHHHH---HCTTC---------SSHH------HHHHHTTCSSSSCEEEEECCSCCH-HHHHHHHHTTCE
T ss_pred eehhccchHHHHHHHH---Hhccc---------ccHH------HHHHhcCCccCCceeeeeeeeech-hHHHHHHhcCCE
Confidence 9996 77766544321 11110 0000 0011111122 2466778876654 668888899987
Q ss_pred EEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCC
Q 014320 310 VIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNG 389 (427)
Q Consensus 310 v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G 389 (427)
|+. ||..... .+.. .+| ++++++.|+.++||||..+.+. .+.+
T Consensus 222 vv~--cP~sn~~-----------l~~g---~~p---------v~~l~~~Gv~v~lGTD~~~~~~-~dm~----------- 264 (310)
T d2i9ua2 222 IVH--CPTSNFN-----------LGSG---MMP---------VRKYLNLGINVVLGSDISAGHT-CSLF----------- 264 (310)
T ss_dssp EEE--CHHHHHH-----------TTCC---CCC---------HHHHHHTTCEEEECCCBTTBCC-SCHH-----------
T ss_pred EEE--eeccccc-----------ccCC---ccc---------ccchhccCceEEEecCCCCCCC-CCHH-----------
Confidence 775 7753211 1111 244 5668999999999999866542 1211
Q ss_pred CchhhHhHHHHHHHHH------hcCCCCHHHHHHHHchhhhcC
Q 014320 390 VNGIEERMHLVWDTMV------ESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 390 ~~~~e~~l~~~~~~~~------~~~~l~l~~~v~~~t~npA~~ 426 (427)
.+.++..++.++. ....++++|+++++|.|+|+.
T Consensus 265 ---~~m~~a~~~~~~~~~~~~~~~~~l~~~e~l~~aT~~gA~a 304 (310)
T d2i9ua2 265 ---KVIAYAIQNSKIKWQESGKKDMFLSTSEAFYMATKKGGSF 304 (310)
T ss_dssp ---HHHHHHHHHHHHHHHHTTSCSCCCCHHHHHHHHTHHHHTT
T ss_pred ---HHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHH
Confidence 2344444432221 134689999999999999985
|
| >d1p1ma2 c.1.9.9 (A:50-330) Hypothetical protein TM0936, probable catalytic domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein TM0936, probable catalytic domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.79 E-value=3e-19 Score=164.27 Aligned_cols=247 Identities=15% Similarity=0.176 Sum_probs=158.1
Q ss_pred cccccccccccCcC---------------------CCCChhhHHH----HHHHHHcCCceEEecCcCCCCCcHHHHHHHH
Q 014320 106 GGIDPHTHLAMEFM---------------------GSETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAY 160 (427)
Q Consensus 106 G~ID~H~H~~~~~~---------------------g~~~~e~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~ 160 (427)
||||+|+|+.+... ...++++.+. +...++++||||+.|+... .....+..
T Consensus 1 GLVnaH~Hl~~~~~rg~~~~~~l~~wl~~~~~~~~~~~t~e~~~~~~~~~~~e~l~~G~Ttv~d~~~~----~~~~~~a~ 76 (281)
T d1p1ma2 1 ALFNTHTHAPMTLLRGVAEDLSFEEWLFSKVLPIEDRLTEKMAYYGTILAQMEMARHGIAGFVDMYFH----EEWIAKAV 76 (281)
T ss_dssp CEEEEEECGGGGGGTTSSCSCCHHHHHHTTHHHHHTTCCHHHHHHHHHHHHHHHHTTTEEEEEEEESS----HHHHHHHH
T ss_pred CcEehhhCHhHHHHHhccCCCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhCCeEEEeeeccC----cHHHHHHH
Confidence 89999999987521 1123444433 3345799999999997532 34556666
Q ss_pred HHHhccccceeceeccccCCChhhHHHHHHHHH-HcCC-CeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-CC
Q 014320 161 EKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVK-EKGI-NSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-EN 237 (427)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~-~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e~ 237 (427)
++.+.+..+.......... ....+++..++.+ ..+. ..+...+.+++...++++.++.+.+.|+++|+++++|+ |+
T Consensus 77 ~~~g~r~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~i~iH~~e~ 155 (281)
T d1p1ma2 77 RDFGMRALLTRGLVDSNGD-DGGRLEENLKLYNEWNGFEGRIFVGFGPHSPYLCSEEYLKRVFDTAKSLNAPVTIHLYET 155 (281)
T ss_dssp HHHCCEEEEEEEECCBTTB-CTTHHHHHHHHHHHHTTGGGTEEEEEEECCTTTSCHHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred HHhCCceEEeeeeeecCcc-ccccHHHHHHHHHHhcCccCceEEEEecccchhhhhhhhHHHHHHHhccCccccccccCC
Confidence 7776665544433221111 2223334433332 2232 35677788899999999999999999999999999996 65
Q ss_pred hhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCcc
Q 014320 238 GDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVS 317 (427)
Q Consensus 238 ~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~ 317 (427)
..+... .+.+.+.|++ +.++.+.|+...+. +.++.+++.|+.++. ||.
T Consensus 156 ~~e~~~-~~~l~~~g~l----------------------------~~~~~~~H~~~~~~-~di~~la~~~~~vv~--cP~ 203 (281)
T d1p1ma2 156 SKEEYD-LEDILNIGLK----------------------------EVKTIAAHCVHLPE-RYFGVLKDIPFFVSH--NPA 203 (281)
T ss_dssp TTCCCC-THHHHTTTTT----------------------------TSCEEEEECTTCCG-GGTTTTTTSSEEEEE--CHH
T ss_pred cccchh-HHHHHHcCCC----------------------------CccccccceeeecH-HHHHHHHhcCCcccc--ccc
Confidence 443211 1234444544 34567888877654 568888888866654 886
Q ss_pred ceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhH
Q 014320 318 GLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERM 397 (427)
Q Consensus 318 ~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l 397 (427)
..+... .. .|| ++++++.|+.++||||+.+.+...+.+ .+.++
T Consensus 204 sn~~lg-----------~~---~~~---------~~~~~~~Gv~v~LGTD~~~s~~~~d~~--------------~em~~ 246 (281)
T d1p1ma2 204 SNLKLG-----------NG---IAP---------VQRMIEHGMKVTLGTDGAASNNSLNLF--------------FEMRL 246 (281)
T ss_dssp HHHHTT-----------CC---CCC---------HHHHHHTTCEEEECCCCTTTTSCCCHH--------------HHHHH
T ss_pred hhhhhc-----------cc---chh---------HHHHHhCCCeEEEECCCCCCCCCcCHH--------------HHHHH
Confidence 332211 11 144 566999999999999987765433321 24555
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 398 HLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 398 ~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
..++.+......++++++++++|.|+||.
T Consensus 247 a~~~~~~~~~~~~~~~~~l~~aT~~gA~a 275 (281)
T d1p1ma2 247 ASLLQKAQNPRNLDVNTCLKMVTYDGAQA 275 (281)
T ss_dssp HHHHHHTTCTTSSCHHHHHHHHTHHHHHH
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence 55554443345699999999999999983
|
| >d2uz9a2 c.1.9.9 (A:76-388) Guanine deaminase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=3.4e-18 Score=159.48 Aligned_cols=263 Identities=16% Similarity=0.066 Sum_probs=154.8
Q ss_pred ccccccccccccCcCC----CC------------------ChhhH----HHHHHHHHcCCceEEecCcCCCCCcHHHHHH
Q 014320 105 PGGIDPHTHLAMEFMG----SE------------------TIDDF----FSGQAAALAGGTTMHIDFVIPINGSLTAGFE 158 (427)
Q Consensus 105 PG~ID~H~H~~~~~~g----~~------------------~~e~~----~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~ 158 (427)
|||||+|+|+.+.... .. ..+.. ......++++|||++.|+............+
T Consensus 1 PGfIdaH~Hl~~~~~~g~~~~~~l~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~tt~~~~~~~~~~~~~~~~~ 80 (313)
T d2uz9a2 1 PGLVDTHIHASQYSFAGSSIDLPLLEWLTKYTFPAEHRFQNIDFAEEVYTRVVRRTLKNGTTTACYFATIHTDSSLLLAD 80 (313)
T ss_dssp ECEEEEEEEGGGGGGTTSCCCSCHHHHHHHTHHHHHHGGGSHHHHHHHHHHHHHHHHHTTEEEEEEECCSCHHHHHHHHH
T ss_pred CCCCcHhhChhhhhhhhccCCCCHHHHHHHhHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCeEeeecccccccchhHHHH
Confidence 9999999999764210 00 11111 1234557899999999876432222223334
Q ss_pred HHHHHhccccceeceec---ccc---CCChhhHHHHHHHHH---HcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCC
Q 014320 159 AYEKKAKNSCMDYGFHM---AIT---KWDEVVSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGA 229 (427)
Q Consensus 159 ~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~l~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~ 229 (427)
...+.+.+..+...... ... ...++.+++..++++ ..+.+.++....++..+..+++.++++.+.|++.|+
T Consensus 81 a~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~l~~~~~~a~~~g~ 160 (313)
T d2uz9a2 81 ITDKFGQRAFVGKVCMDLNDTFPEYKETTEESIKETERFVSEMLQKNYSRVKPIVTPRFSLSCSETLMGELGNIAKTRDL 160 (313)
T ss_dssp HHHHHTCEEEEECEECSCCSSSTTSCCCHHHHHHHHHHHHHHHHHHTCSSEEEEEEECCGGGCCHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCcccccceeccCCcccchhhhhHHHHHHHHHHHHHHhhcccccceeEEEeccccccccHHHHHHHHHHhhcccc
Confidence 44555555433322211 111 112234444444443 357788899999999999999999999999999999
Q ss_pred cEEEec-CChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCC
Q 014320 230 LAMVHA-ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQ 308 (427)
Q Consensus 230 ~v~~H~-e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~ 308 (427)
++++|+ |+..+...+. .+...+. ++ + ...+.....+.++.+.|+...+. +.++.+++.|+
T Consensus 161 ~~~~H~~e~~~e~~~~~-~~~~~~~---------~~-------~-~~~~~~g~l~~~~~~~H~~~l~~-~e~~~l~~~g~ 221 (313)
T d2uz9a2 161 HIQSHISENRDEVEAVK-NLYPSYK---------NY-------T-SVYDKNNLLTNKTVMAHGCYLSA-EELNVFHERGA 221 (313)
T ss_dssp EEEEEESCSHHHHHHHH-HHSTTSS---------SH-------H-HHHHHTTCCSTTEEEEECTTCCH-HHHHHHHHHTC
T ss_pred ceeeehhcchhHHHHHH-HhhcccC---------Ch-------H-HHHHHcCCcCCcceEEeeeecch-hHHHHHhhhcc
Confidence 999997 6655444332 1111110 00 0 01111112345778889987654 66788888998
Q ss_pred CEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCC
Q 014320 309 RVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPN 388 (427)
Q Consensus 309 ~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~ 388 (427)
.++. ||........ -.|| +.++++.|+.+++|||..+.. ..+.
T Consensus 222 ~~~~--~P~~~~~~~~--------------~~~~---------v~~l~~~Gv~valGTD~~~~~-~~~~----------- 264 (313)
T d2uz9a2 222 SIAH--CPNSNLSLSS--------------GFLN---------VLEVLKHEVKIGLGTDVAGGY-SYSM----------- 264 (313)
T ss_dssp EEEE--CHHHHHHTTC--------------CCCC---------HHHHHHTTCEEEECCCTTTSC-CCCH-----------
T ss_pred cccc--cchhhhhccc--------------cccc---------hhhhhccCceEEEeCCCCCCC-CCCH-----------
Confidence 7775 7753322111 1244 466889999999999974422 1111
Q ss_pred CCchhhHhHHHHHHHHHh-----cCCCCHHHHHHHHchhhhcC
Q 014320 389 GVNGIEERMHLVWDTMVE-----SGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 389 G~~~~e~~l~~~~~~~~~-----~~~l~l~~~v~~~t~npA~~ 426 (427)
-.+.+....+..... ...++++|+++++|.|+|+.
T Consensus 265 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~e~l~~AT~ngA~a 304 (313)
T d2uz9a2 265 ---LDAIRRAVMVSNILLINKVNEKSLTLKEVFRLATLGGSQA 304 (313)
T ss_dssp ---HHHHHHHHHHHHHHHHTTSSSSCCCHHHHHHHHTHHHHHH
T ss_pred ---HHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 123344433322222 24599999999999999974
|
| >d2paja2 c.1.9.9 (A:70-405) Hypothetical protein GOS_1943094 {Environmental samples} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein GOS 1943094 species: Environmental samples
Probab=99.67 E-value=1.9e-15 Score=141.63 Aligned_cols=262 Identities=16% Similarity=0.127 Sum_probs=139.8
Q ss_pred ccccccccccccCcC-C----------------------CCChhhHHH----HHHHHHcCCceEEecCcCCCCC-----c
Q 014320 105 PGGIDPHTHLAMEFM-G----------------------SETIDDFFS----GQAAALAGGTTMHIDFVIPING-----S 152 (427)
Q Consensus 105 PG~ID~H~H~~~~~~-g----------------------~~~~e~~~~----~~~~~l~~GvTtv~d~~~~~~~-----~ 152 (427)
|||||+|+|+.++.. | ..++++++. +...++++||||++|+...... .
T Consensus 1 PGlInaH~Hl~~s~~rg~~~~~~~~l~~wl~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~GvTtv~d~~~~~~~~~~~~~ 80 (336)
T d2paja2 1 PAWVNTHHHLFQSLLKGEPAGLDATLTPWLAATPYRFRALFDERRFRLAARIGLIELARSGCATVADHNYVYYPGMPFDS 80 (336)
T ss_dssp ECEECCCCCGGGGGCCSCC-----------------CGGGCCHHHHHHHHHHHHHHHHTTTEEEEEECCCCCCTTCSSCH
T ss_pred CCCEehhhChhhhccccccccCCCCHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHhCCCeEEEecccccccccchhH
Confidence 999999999865421 1 123444443 3455689999999998643222 2
Q ss_pred HHHHHHHHHHHhccccceeceeccc-----------cC-CChhhHHHHHHHHHH-----cCCCeEEEEEecCCCccCCHH
Q 014320 153 LTAGFEAYEKKAKNSCMDYGFHMAI-----------TK-WDEVVSDEMEVMVKE-----KGINSFKFFMAYKGSFMINDE 215 (427)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~-~~~~~~~~~~~l~~~-----~g~~~ik~~~~~~~~~~~~~~ 215 (427)
....++...+.+.+..+..+..... .. ...........+... .+...............++++
T Consensus 81 ~~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (336)
T d2paja2 81 SAILFEEAEKLGLRFVLLRGGATQTRQLEADLPTALRPETLDAYVADIERLAARYHDASPRAMRRVVMAPTTVLYSISPR 160 (336)
T ss_dssp HHHHHHHHHHTTCEEEEEECCCSCCCSCSTTSCGGGCCCCHHHHHHHHHHHHHHTCCCSTTCSEEEEECCTTTTTSSCHH
T ss_pred HHHHHHHHHHhCceeEeecceeccCcccccccchhhhhhhHHHHHHHHHHHHHHhhhhcccccceeeecccccCcccCHH
Confidence 3344555556655533322211100 00 011122333333322 122234455555555667899
Q ss_pred HHHHHHHHHHHcCCcEEEecCCh-hhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCH
Q 014320 216 LLIEGFKRCKSLGALAMVHAENG-DAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM 294 (427)
Q Consensus 216 ~l~~~~~~a~~~g~~v~~H~e~~-~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~ 294 (427)
.++...+.+++.+.++++|+... ....... ...|. .+ ..........+......|....
T Consensus 161 ~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~---~~~~~----------~~-------~~~~~~~~~~~~~~~~~h~~~~ 220 (336)
T d2paja2 161 EMRETAAVARRLGLRMHSHLSETVGYQDSAY---SMYGK----------SP-------VAFCGEHDWLGSDVWYAHLVKV 220 (336)
T ss_dssp HHHHHHHHHHHTTCEEEEECC----------------CC----------CH-------HHHHHHTTCCSTTEEEESCCSC
T ss_pred HHHHHHhhhhccCCceeeeccccchhhHHHH---HhcCC----------cc-------ccccccccccccccccccceec
Confidence 99999999999999999997443 3222211 01111 00 0111222233466788888776
Q ss_pred HHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChh
Q 014320 295 DAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNST 374 (427)
Q Consensus 295 ~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~ 374 (427)
+. +.++.+++.|..+.. ||...... ....+|++. +++.|+.++||||..+.+..
T Consensus 221 ~~-~~~~~l~~~~~~~~~--~p~~~~~~--------------~~~~~~~~~---------l~~~Gv~valGTD~~~s~~~ 274 (336)
T d2paja2 221 DA-DEIALLAQTGTGVAH--CPQSNGRL--------------GSGICPVRE---------MADAGVPVSIGVDGAASNEA 274 (336)
T ss_dssp CH-HHHHHHHHHTCEEEE--CHHHHHCC-------------------CCTT---------HHHHTCCEEECCCHHHHCSC
T ss_pred ch-HHHHHHhhcccccee--ccchhhcc--------------Cccccchhh---------HHhcCCeEEEEcCCCCCCCc
Confidence 54 556677777876654 76532211 112366665 78889999999996543322
Q ss_pred hhhcCCCCCccCCCCCchhhHhHHHHHHHH----------------HhcCCCCHHHHHHHHchhhhcC
Q 014320 375 QKAFGIDDFRKIPNGVNGIEERMHLVWDTM----------------VESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 375 ~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~----------------~~~~~l~l~~~v~~~t~npA~~ 426 (427)
.+.+ .+.++..++.+. .....+|+.++++++|.|+||.
T Consensus 275 ~d~~--------------~emr~a~~~~r~~~~~~~~~~~~~~~~~~~~~~~t~~eal~~aT~~gA~a 328 (336)
T d2paja2 275 ADMI--------------SEVHMTWLAQRARLGMLAQPAYRGGSFEGGAGAASIAEVIHWGTAGGARV 328 (336)
T ss_dssp CSHH--------------HHHHHHHHHHHHTC-------------------CCHHHHHHHHTHHHHHH
T ss_pred ccHH--------------HHHHHHHHHHHHhhccccccccccccccCCCCCCCHHHHHHHHHHHHHHH
Confidence 2211 233444333211 1245799999999999999974
|
| >d1onwa1 b.92.1.7 (A:1-62,A:347-389) Isoaspartyl dipeptidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Isoaspartyl dipeptidase domain: Isoaspartyl dipeptidase species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=2.5e-16 Score=120.48 Aligned_cols=87 Identities=22% Similarity=0.285 Sum_probs=67.6
Q ss_pred CccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCC--CCCceEEeCCCCEEeccccccccccccCcCCCCChhhHHH
Q 014320 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS 129 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~--~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~~~~e~~~~ 129 (427)
+..++|+|++|++++.....+|+|+||||++|++..+. .++.++||++|++|+|||||+|.|..........
T Consensus 7 ~~~llikna~i~~~~~~~~~dI~I~~g~I~~I~~~~~~~~~~~~~vID~~G~~v~PG~ID~H~h~~~~~~p~~~------ 80 (105)
T d1onwa1 7 AGFTLLQGAHLYAPEDRGICDVLVANGKIIAVASNIPSDIVPNCTVVDLSGQILCPEILPGNDADLLVMTPELR------ 80 (105)
T ss_dssp GCCEEEESCEEESSSEEEECEEEEETTEEEEEETTCCTTSSSSCEEEECTTCEEEESCCTTSBCCEEEECTTCC------
T ss_pred CCCEEEECcEEEcCCCCeeeeEEEECCEEEEeccCcccccCCCCeEEcCCCCEEeCCEeecccCcceecCCCcc------
Confidence 34689999999999877789999999999999987543 3467899999999999999999875443111122
Q ss_pred HHHHHHcCCceEEecC
Q 014320 130 GQAAALAGGTTMHIDF 145 (427)
Q Consensus 130 ~~~~~l~~GvTtv~d~ 145 (427)
.+..+..|+|++.+-
T Consensus 81 -~~~~~~~G~~~v~~~ 95 (105)
T d1onwa1 81 -IEQVYARGKLMVKDG 95 (105)
T ss_dssp -EEEEEETTEEEEETT
T ss_pred -hHHHhhcceEEeccC
Confidence 123468899998864
|
| >d2imra2 c.1.9.16 (A:91-398) Hypothetical protein DR0824 {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: DR0824-like domain: Hypothetical protein DR0824 species: Deinococcus radiodurans [TaxId: 1299]
Probab=99.62 E-value=1.6e-15 Score=140.11 Aligned_cols=269 Identities=14% Similarity=0.081 Sum_probs=143.4
Q ss_pred ccccccccccccCcCC-------------------CCChhhHHHHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhc
Q 014320 105 PGGIDPHTHLAMEFMG-------------------SETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK 165 (427)
Q Consensus 105 PG~ID~H~H~~~~~~g-------------------~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~ 165 (427)
|||||+|+|+.++... ....+....+.+.++++||||+.|+... .....+...+.+.
T Consensus 1 PGlIdaH~Hl~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~l~~G~Ttv~d~~~~----~~~~~~~~~~~~~ 76 (308)
T d2imra2 1 PPPVNAHTHLDMSAYEFQALPYFQWIPEVVIRGRHLRGVAAAQAGADTLTRLGAGGVGDIVWA----PEVMDALLAREDL 76 (308)
T ss_dssp SCCCEEEEESSCCHHHHHHCHHHHTSHHHHHHHTTCCHHHHHHHHHHHHHHTTCCCEEEEECS----HHHHHHHHTCTTC
T ss_pred CCccchhhChhhhCccccCCCHHHHHHHHHhccccccHHHHHHHHHHHHHHcCCeEEEehhcC----HHHHHHHHHHhCc
Confidence 9999999999754110 0011122344566799999999998542 1222222333333
Q ss_pred cccceeceeccccCCChhhHHHHHHHHH---HcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec-CChhhH
Q 014320 166 NSCMDYGFHMAITKWDEVVSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAV 241 (427)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-e~~~~~ 241 (427)
+...............++..+...+..+ ......++..+..+....++.+.++.....+++.+.+++.|. +.....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 156 (308)
T d2imra2 77 SGTLYFEVLNPFPDKADEVFAAARTHLERWRRLERPGLRLGLSPHTPFTVSHRLMRLLSDYAAGEGLPLQIHVAEHPTEL 156 (308)
T ss_dssp CEEEEEEECBCCGGGHHHHHHHHHHHHHHHHTTCBTTEEEEEEECCSSSBCHHHHHHHHHHHHHHTCCBEEEESCSHHHH
T ss_pred CeEEEeeecCCCCCCHHHHHHHHHHHHHHHhccCCCceEEeeecccccccchHHHHHHhhhccccCccceeeeecccchh
Confidence 3222222222211112233444444432 233456777778888888899999999999999999999996 555444
Q ss_pred HHHHHHHH---HcCCCCcccc-------cccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEE
Q 014320 242 FEGQKRMI---ELGITGPEGH-------ALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVI 311 (427)
Q Consensus 242 ~~~~~~l~---~~G~~~~~~~-------~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~ 311 (427)
....+... .........+ ....... ..++. ++.....+.+..+.|...... +.++.+++.|..+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~-l~~~g~l~~~~~~~h~~~~~~-~~~~~~~~~g~~~~ 231 (308)
T d2imra2 157 EMFRTGGGPLWDNRMPALYPHTLAEVIGREPGPDL---TPVRY-LDELGVLAARPTLVHMVNVTP-DDIARVARAGCAVV 231 (308)
T ss_dssp HHHHHSCSTTGGGSCGGGSCSSHHHHHTSCCCTTC---CHHHH-HHHHTCGGGCCEEEECCSCCH-HHHHHHHHHTCCEE
T ss_pred hhhhhhccchhhhhhhhhhHHHhhhhhhcccccCC---CHHHH-HHHCCCCCCCeeeeecccchh-hhhhhhhhcCCccc
Confidence 33321100 0000000000 0000000 01111 111222234566777766543 55677777887766
Q ss_pred EecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCc
Q 014320 312 GEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVN 391 (427)
Q Consensus 312 ~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~ 391 (427)
. ||........ . .+| ++++.+.|+.+++|||+.+.+...+.
T Consensus 232 ~--~p~~~~~~~~-----------~---~~~---------~~~l~~aGv~valGTD~~~~~~~~~~-------------- 272 (308)
T d2imra2 232 T--CPRSNHHLEC-----------G---TFD---------WPAFAAAGVEVALGTDSVASGETLNV-------------- 272 (308)
T ss_dssp E--CHHHHHHTTC-----------C---CCC---------HHHHHHTTCCEEECCCCHHHHSCSCT--------------
T ss_pred c--cccccccccc-----------c---cch---------HHHHHHCCCcEEEECCCCCCCCchhH--------------
Confidence 5 6642211110 0 122 56688999999999996332111110
Q ss_pred hhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 392 GIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 392 ~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
-.|.++... ...++|+.|+++++|.|+||+
T Consensus 273 ~~e~~~a~~-----~~~g~tp~e~l~~aT~~gA~~ 302 (308)
T d2imra2 273 REEVTFARQ-----LYPGLDPRVLVRAAVKGGQRV 302 (308)
T ss_dssp HHHHHHHHH-----HCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HcCCCCHHHHHHHHHHHHHHH
Confidence 012232221 134699999999999999984
|
| >d1yrra1 b.92.1.5 (A:1-53,A:351-382) N-acetylglucosamine-6-phosphate deacetylase, NagA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA domain: N-acetylglucosamine-6-phosphate deacetylase, NagA species: Escherichia coli [TaxId: 562]
Probab=99.62 E-value=3.9e-16 Score=114.54 Aligned_cols=63 Identities=14% Similarity=0.237 Sum_probs=56.5
Q ss_pred EEEECcEEEcCCC-ceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccccC
Q 014320 55 ILIKGGTVVNAHH-QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAME 117 (427)
Q Consensus 55 ~~i~~~~i~~~~~-~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~ 117 (427)
..|+|++|+|++. ..++.|+|+||||.+|++..+.+++.++||++|++|+|||||.|+|....
T Consensus 2 ~al~n~rI~dg~~~~~~~~i~i~~g~I~~Ig~~~~~p~~~~viDl~G~~l~PGlid~hvH~~~~ 65 (85)
T d1yrra1 2 YALTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELPPEIEQRSLNGAILSPTLAAGKVANLTA 65 (85)
T ss_dssp EEEESSEEECSSCEESSEEEEEETTEEEEEEEGGGSCTTCCEEECTTCEEEESCCTTSBCCEEE
T ss_pred eEEEeeEEECCCCcEeccEEEEeccEEEEEcccccccceeEEEecCCcEEEcccEecceeeccc
Confidence 5789999999887 45789999999999999887777788999999999999999999997654
|
| >d1ejxc1 b.92.1.1 (C:1002-1129,C:1423-1475) alpha-Subunit of urease {Klebsiella aerogenes [TaxId: 28451]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: alpha-Subunit of urease domain: alpha-Subunit of urease species: Klebsiella aerogenes [TaxId: 28451]
Probab=99.60 E-value=1.9e-16 Score=128.97 Aligned_cols=93 Identities=22% Similarity=0.253 Sum_probs=75.3
Q ss_pred CccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCC----------CCCCceEEeCCCCEEeccccccccccccCcCCC
Q 014320 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNIN----------VGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS 121 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~----------~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~g~ 121 (427)
..|++|+|+.|++..+...++|.|+||||++||+... ...++++||++|++|+||+||+|+|+.++.
T Consensus 64 ~lDlvI~n~~Ivd~~Gi~kaDIgIkdGrI~~IGkagnpd~~d~v~l~~g~~tevIdaeG~ivtpG~ID~HvHf~~p~--- 140 (181)
T d1ejxc1 64 CVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAGSIEVGKLADLVV--- 140 (181)
T ss_dssp SCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECEECTTTCSSCCEECCTTCEEEECTTCEEEECSSCTTSBCCEEE---
T ss_pred cccEEEEccEEcCCCCcEEEEEEEeCCEEEEEecCCCccccCCceeeeccceEEecCCCcEEeeeeeecceEEeeee---
Confidence 5689999999999988899999999999999997432 124679999999999999999999999872
Q ss_pred CChhhHHHHHHHHHcCCceEEecCcC
Q 014320 122 ETIDDFFSGQAAALAGGTTMHIDFVI 147 (427)
Q Consensus 122 ~~~e~~~~~~~~~l~~GvTtv~d~~~ 147 (427)
..++.+.++...++.+|++++..|..
T Consensus 141 ~~~eal~sG~tt~igGG~~~~gpm~g 166 (181)
T d1ejxc1 141 WSPAFFGVKPATVIKGGMIAIAPMGD 166 (181)
T ss_dssp ECGGGTTTSCSEEEETTEEEEEEECC
T ss_pred eehhhhccchheEEeCCceEEEECCC
Confidence 34566655556667777777776643
|
| >d2p9ba1 b.92.1.10 (A:9-70,A:395-450) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Uncharacterized protein BL1453 species: Bifidobacterium longum [TaxId: 216816]
Probab=99.57 E-value=2e-15 Score=117.14 Aligned_cols=66 Identities=24% Similarity=0.335 Sum_probs=55.8
Q ss_pred CccEEEECcEEEcCCC----ceeeeEEEe-CCeEEEeeCCCC--CCCCceEEeCCCCEEeccccccccccccC
Q 014320 52 SSKILIKGGTVVNAHH----QQIADVYVE-DGIVVAVQPNIN--VGDDVKVLDATGKFVMPGGIDPHTHLAME 117 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~----~~~~~i~i~-~g~I~~vg~~~~--~~~~~~viD~~g~~v~PG~ID~H~H~~~~ 117 (427)
+..++|+|++|++++. .++++|+|+ ||||.+||+..+ .+.+.++||++|++|||||||+|+|+...
T Consensus 3 ~~p~ai~na~iit~d~~~~v~~~~~ilI~~dG~I~~vg~~~~~~~~~~~~viD~~Gk~v~PGlid~H~Hl~~~ 75 (118)
T d2p9ba1 3 VEPFALAHATIVTGDKAGTILRNMTIVVGADGRIEQVAPSIETSIPAEYHYLDGTGKIVMLEVGKSADLLVLN 75 (118)
T ss_dssp CCCEEEEEEEEECCCTTCCEEEEEEEEECTTSBEEEEEEGGGCCCCTTCEEEECTTCEEECCTTSBCCEEEES
T ss_pred CccEEEEeeEEEeCCCCCceeeeEEEEEecCCeEEEEcccccccccceeEEEeccCcEEEeeecceeEEEEec
Confidence 3458999999999764 368899995 699999997543 35677999999999999999999999775
|
| >d1onwa2 c.1.9.13 (A:63-346) Isoaspartyl dipeptidase, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Isoaspartyl dipeptidase, catalytic domain domain: Isoaspartyl dipeptidase, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=2.2e-14 Score=129.82 Aligned_cols=71 Identities=15% Similarity=0.075 Sum_probs=46.7
Q ss_pred HHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 351 ALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 351 ~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
.+++.......+.++|||.+.....+. .....+.|.++.+..++.++ .++.++++|++++++++|.||||+
T Consensus 207 ~~~~~~~~~~~~~~~td~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~gls~~~al~~aT~npAr~ 277 (284)
T d1onwa2 207 RAVQAGIPLARVTLSSDGNGSQPFFDD----EGNLTHIGVAGFETLLETVQ-VLVKDYDFSISDALRPLTSSVAGF 277 (284)
T ss_dssp HHHHTTCCGGGEEEECCBTCC-----------------CCCCSHHHHHHHH-HHHHHHCCCHHHHHGGGTHHHHHH
T ss_pred HHHHhCCCCceEEEEeccccccccccc----cccccCCCCChHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHH
Confidence 344444455578999999877655443 34456778888888888776 577778899999999999999985
|
| >d2fvka1 b.92.1.3 (A:2-56,A:441-541) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Probab=99.49 E-value=1.4e-14 Score=120.03 Aligned_cols=66 Identities=26% Similarity=0.419 Sum_probs=59.6
Q ss_pred CccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEE---eccccccccccccC
Q 014320 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFV---MPGGIDPHTHLAME 117 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v---~PG~ID~H~H~~~~ 117 (427)
|.|++|+|++|++++.....+|+|+||||++|++....+.+.++||++|++| +|||||+|+|+..+
T Consensus 2 m~dllikn~~v~~~~~~~~~di~i~~g~I~~ig~~~~~~~~~~viDa~G~~V~p~~pg~~d~Hih~~~~ 70 (156)
T d2fvka1 2 IYDLIIKNGIICTASDIYAAEIAVNNGKVQLIAASIDPSLGSEVIDAEGAFITPILPGVSDADLVIWYP 70 (156)
T ss_dssp CEEEEEESCEEECSSCEEECEEEEETTEEEEEESCCCGGGEEEEEECTTCEEEECCTTTSBCCEEEECC
T ss_pred CccEEEECCEEECCCCCEEEEEEEECCEEEEecCCCCCCCCCEEEECCCCEEeeecccccccceEEEee
Confidence 7899999999999988888999999999999998765555678999999997 69999999999876
|
| >d2r8ca1 b.92.1.9 (A:2-57,A:369-414) Uncharacterized protein EAJ56179 {Unidentified organism [TaxId: 32644]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Uncharacterized protein EAJ56179 species: Unidentified organism [TaxId: 32644]
Probab=99.48 E-value=3.2e-14 Score=108.58 Aligned_cols=60 Identities=23% Similarity=0.427 Sum_probs=52.3
Q ss_pred cEEEECcEEEcCCC---ceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccc
Q 014320 54 KILIKGGTVVNAHH---QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113 (427)
Q Consensus 54 ~~~i~~~~i~~~~~---~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H 113 (427)
+++|+|++|+++.+ .++.+|+|+||||++|++....+++.++||++|++|+|||||.|.|
T Consensus 2 ~~l~~n~~v~d~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~vID~~G~~v~PGlid~h~~ 64 (102)
T d2r8ca1 2 TFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKSSNAHVIDVKGKTIMPRIVPGAHA 64 (102)
T ss_dssp EEEEEEEEECCTTSSSCEEEEEEEEESSBEEEEESSCCCCSSCEEEECTTCEEEESCCTTSBC
T ss_pred eEEEECeEEECCCCCCcccCcEEEEECCEEEEccccCCCCCCCEEEeCCCCEEECceeeheee
Confidence 47999999999765 3568999999999999987666677899999999999999988764
|
| >d1m7ja3 c.1.9.11 (A:62-419) N-acyl-D-aminoacid amidohydrolase, catalytic domain {Alcaligenes faecalis [TaxId: 511]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: D-aminoacylase, catalytic domain domain: N-acyl-D-aminoacid amidohydrolase, catalytic domain species: Alcaligenes faecalis [TaxId: 511]
Probab=99.47 E-value=2.2e-12 Score=121.19 Aligned_cols=204 Identities=13% Similarity=0.048 Sum_probs=125.1
Q ss_pred ChhhHHHHHHHHH---HcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcc
Q 014320 181 DEVVSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPE 257 (427)
Q Consensus 181 ~~~~~~~~~~l~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~ 257 (427)
+++.+++|+++++ +.|+.++...+.|......+.+++.++.+.+.++|..+..|..+...-
T Consensus 103 t~~ei~~M~~ll~eal~~GA~G~Stgl~y~P~~~A~~~El~~lak~~~~~g~~~~~h~r~~~~~---------------- 166 (358)
T d1m7ja3 103 TADEIQAMQALADDALASGAIGISTGAFYPPAAHASTEEIIEVCRPLITHGGVYATHMRDEGEH---------------- 166 (358)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCEEEEETTSGGGTTCCHHHHHHHHTHHHHHTCEEEEECSCSSTT----------------
T ss_pred CHHHHHHHHHHHHHHHhcCCcccccCCcccccccCCHHHHHHHHHHHHhcCCeeeeeecccccc----------------
Confidence 4566777777765 478988877666542333588999999999999999999997432110
Q ss_pred cccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCC---------HHHHHHHHHHhhcCCCEEEecCccceeeCcccccC
Q 014320 258 GHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS---------MDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWH 328 (427)
Q Consensus 258 ~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~---------~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~ 328 (427)
..+++.+.++++++.|++++++|+.. ...++.++.++ +|.+|++++.|+....+.-.-..
T Consensus 167 ----------~~~~~~e~~~~a~~~g~~~~ish~~~~~~~~~~~~~~~~~~~~~a~-~G~~i~~d~yPy~ag~t~l~~~~ 235 (358)
T d1m7ja3 167 ----------IVQALEETFRIGRELDVPVVISHHKVMGKLNFGRSKETLALIEAAM-ASQDVSLDAYPYVAGSTMLKQDR 235 (358)
T ss_dssp ----------HHHHHHHHHHHHHHHTSCEEECSCCCCSGGGTTTHHHHHHHHHHHH-HHSCEEEEECSCSCEEEECCCCT
T ss_pred ----------HHHHHHHHHHHHHHcCCceEecccccCCCcchhhHHHHHHHHHHHh-cCCCcceeecCccccccccchhh
Confidence 13567788899999999999999853 12234444444 58899999999754322110000
Q ss_pred CCcccCceeEE---cCCCCCcc-----------------------------cHHHHHHHHhcCCceEEecCCCCCChhhh
Q 014320 329 SDFVTAAKYVM---SPPIRASG-----------------------------HNKALQAALATGILQLVGTDHCAFNSTQK 376 (427)
Q Consensus 329 ~~~~~~~~~~~---~pplr~~~-----------------------------~~~~l~~~l~~G~~~~lgSD~~p~~~~~~ 376 (427)
..+........ ++.+..+. +.+.+.++++. -...+|||..+|..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~G~~l~eiA~~~g~~p~d~~~dl~~~~~~~~~~~e~~v~~~l~~-p~~~igSDgga~~~--- 311 (358)
T d1m7ja3 236 VLLAGRTLITWCKPYPELSGRDLEEIAAERGKSKYDVVPELQPAGAIYFMMDEPDVQRILAF-GPTMIGSDGLPHDE--- 311 (358)
T ss_dssp TTTSSCEEEEEESSCGGGTTCBHHHHHHHTTSCHHHHHHHHCSEEEEECCCCHHHHHHHHHS-TTEEECCCCCTTCS---
T ss_pred hhhccchhhhccccChhhccCcHHHHHHHcCCCHHHHHHHHhhccchhhcCCHHHHHHHHhC-CCceEEcCcccCCC---
Confidence 00000001111 11221110 12345555543 34678899766532
Q ss_pred hcCCCCCccCCCCCchhhHhHHHHHHHHHhc-CCCCHHHHHHHHchhhhcC
Q 014320 377 AFGIDDFRKIPNGVNGIEERMHLVWDTMVES-GQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 377 ~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~-~~l~l~~~v~~~t~npA~~ 426 (427)
...+..-..+|.++.+.|++ +.||++++|+.+|..||++
T Consensus 312 -----------~~hpr~~gtf~r~L~~~vRe~~~lsLeeAI~k~T~~pA~~ 351 (358)
T d1m7ja3 312 -----------RPHPRLWGTFPRVLGHYSRDLGLFPLETAVWKMTGLTAAK 351 (358)
T ss_dssp -----------SCCTHHHHHHHHHHCCCCCCTCSSCHHHHHHTTTHHHHHH
T ss_pred -----------CcCCCCcccHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHH
Confidence 12233333556566555654 5699999999999999974
|
| >d1nfga1 b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Burkholderia pickettii [TaxId: 329]
Probab=99.46 E-value=5.1e-14 Score=111.15 Aligned_cols=62 Identities=26% Similarity=0.515 Sum_probs=55.2
Q ss_pred ccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEecccccccccccc
Q 014320 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAM 116 (427)
Q Consensus 53 ~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~ 116 (427)
.|++|+|++|++++....++|+|+||||++||+... ++.++||++|++|+||+||.|+|+..
T Consensus 1 mDllikn~~v~~~~~~~~~di~I~dg~I~~ig~~~~--~~~~~iDa~G~~v~Pg~i~~~~~~~i 62 (127)
T d1nfga1 1 MDIIIKNGTIVTADGISRADLGIKDGKITQIGGALG--PAERTIDAAGRYVFPIAVGSDADIVL 62 (127)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEETTEEEEESSCCC--CCSEEEECTTCEEEECSTTSBCCEEE
T ss_pred CcEEEECCEEECCCCCEEEEEEEECCEEEEeeCCCC--CceEEEEeeceEEeeeccccccccee
Confidence 378999999999988888999999999999998653 46799999999999999999999743
|
| >d1ynya1 b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus sp. AR9 [TaxId: 301298]
Probab=99.42 E-value=1.5e-13 Score=108.83 Aligned_cols=61 Identities=34% Similarity=0.539 Sum_probs=53.0
Q ss_pred EEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEecccccccccccc
Q 014320 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAM 116 (427)
Q Consensus 55 ~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~ 116 (427)
++|+|++|++++....++|+|+||||++||+..+.+ +.++||++|++|+||+||.|+|+..
T Consensus 2 ~likn~~i~~~~~~~~~di~I~~g~I~~ig~~~~~~-~~~viDa~g~~v~Pg~i~~~~~~~i 62 (127)
T d1ynya1 2 KWIRGGTVVTAADTYQADVLIEGERVVAIGHQLSVN-GAEEIDATGCYVIPIAVGSDADIVI 62 (127)
T ss_dssp EEEESCEEECSSCEEECEEEEETTEEEEEECC-----CCEEEECTTSEEEECSTTSBCCEEE
T ss_pred EEEECcEEECCCCCEEEeEEEECCEEEEecCCCCCC-CCEEEEhhhceeecccccccchhhh
Confidence 699999999998888999999999999999876543 5699999999999999999999754
|
| >d1gkra1 b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: L-hydantoinase species: Arthrobacter aurescens [TaxId: 43663]
Probab=99.41 E-value=1.4e-13 Score=108.58 Aligned_cols=66 Identities=27% Similarity=0.374 Sum_probs=59.8
Q ss_pred CccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccc---cccccccccC
Q 014320 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGG---IDPHTHLAME 117 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~---ID~H~H~~~~ 117 (427)
|.|++|+|++|++++....++|+|+||||++|++....+++.++||++|++|+||+ .|+|.|+..+
T Consensus 1 M~dllIkn~~iv~~~~~~~~Di~I~dgkI~~i~~~~~~~~a~~~iDa~g~~v~P~~~vG~DAD~~l~Dp 69 (126)
T d1gkra1 1 MFDVIVKNCRLVSSDGITEADILVKDGKVAAISADTSDVEASRTIDAGGKFVMPTLQVGSDADLLILDL 69 (126)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEETTEEEEEESCCTTCCEEEEEECTTCEEEESCCTTSBCCEEEEES
T ss_pred CccEEEECcEEECCCCCEEEeEEEECCEEEEEcCcCCcccceEEeehhhcccccceeecccchhheecc
Confidence 46899999999999888889999999999999987665566789999999999998 9999998876
|
| >d1k1da1 b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.35 E-value=5.2e-13 Score=105.73 Aligned_cols=61 Identities=28% Similarity=0.486 Sum_probs=53.5
Q ss_pred cEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccccccccccc
Q 014320 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLA 115 (427)
Q Consensus 54 ~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~ 115 (427)
.++|+|++|++++....++|+|+||||++|++..+. ++.++||++|++|+||+||.|+|+.
T Consensus 2 ~~likn~~v~~~~~~~~~Di~I~~g~I~~Ig~~~~~-~~~~vida~g~~v~P~~v~~~~~~~ 62 (128)
T d1k1da1 2 TKIIKNGTIVTATDTYEAHLLIKDGKIAMIGQNLEE-KGAEVIDAKGCYVFPIVVGSDADLV 62 (128)
T ss_dssp CEEEEEEEEECSSCEEEEEEEECSSBEEEEESSCCC-SSCCCEECTTCEEEECSTTSBCCEE
T ss_pred CEEEECcEEECCCCCEEeeEEEECCEEEEEcCCCCC-CceEEeeeCCCeEeeeecccccceE
Confidence 479999999999888889999999999999997653 4568999999999999997777753
|
| >d2qs8a1 b.92.1.9 (A:7-63,A:374-412) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Xaa-Pro dipeptidase species: Alteromonas macleodii [TaxId: 28108]
Probab=99.35 E-value=4.5e-13 Score=100.32 Aligned_cols=61 Identities=16% Similarity=0.270 Sum_probs=52.4
Q ss_pred cEEEECcEEEcCCC---ceeeeEEEeCCeEEEeeCCC-CCCCCceEEeCCCCEEecccccccccc
Q 014320 54 KILIKGGTVVNAHH---QQIADVYVEDGIVVAVQPNI-NVGDDVKVLDATGKFVMPGGIDPHTHL 114 (427)
Q Consensus 54 ~~~i~~~~i~~~~~---~~~~~i~i~~g~I~~vg~~~-~~~~~~~viD~~g~~v~PG~ID~H~H~ 114 (427)
.++|+|++|+++.+ ..+.+|+|+||||++|++.. ..+++.++||++|++|||||+|.|+|.
T Consensus 2 ktlI~~g~liDg~~~~~~~~~~I~I~~~~I~~V~~~~~~~~~~~~vID~~G~~v~PGL~~g~~~d 66 (96)
T d2qs8a1 2 KTLIHAGKLIDGKSDQVQSRISIVIDGNIISDIKKGFISSNDFEDYIDLRDHTVLPSIESGKLAD 66 (96)
T ss_dssp CEEEEEEEECCSSCSSCEEEEEEEEETTEEEEEEESCCCCTTSSEEEEEEEEEEEESCCTTSBCC
T ss_pred eEEEECeEEEECCCCccccCceEEEECCEEEEEcccccCCCCCCEEEECCCCEeccCccccCccc
Confidence 37999999999864 35789999999999998753 334568999999999999999999994
|
| >d2ooda2 c.1.9.9 (A:73-397) Guanine deaminase {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.34 E-value=2.6e-11 Score=111.52 Aligned_cols=265 Identities=15% Similarity=-0.000 Sum_probs=131.9
Q ss_pred ccccccccccccCcC-CCC--------------------ChhhHH----HHHHHHHcCCceEEecCcCCCCCcHHHHHHH
Q 014320 105 PGGIDPHTHLAMEFM-GSE--------------------TIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEA 159 (427)
Q Consensus 105 PG~ID~H~H~~~~~~-g~~--------------------~~e~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~ 159 (427)
|||||+|+|+.++.. |.. ..+... ...+.++.+||||+.|+............+.
T Consensus 1 PGlID~H~Hl~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~Tt~~d~~~~~~~~~~~~~~~ 80 (325)
T d2ooda2 1 PGFIDGHIHLPQTRVLGAYGEQLLPWLQKSIYPEEIKYKDRNYAREGVKRFLDALLAAGTTTCQAFTSSSPVATEELFEE 80 (325)
T ss_dssp ECEEEEEEEGGGTTCTTCCSCCHHHHHHHHTHHHHGGGGSHHHHHHHHHHHHHHHHHTTEEEEEEECCSSHHHHHHHHHH
T ss_pred CCCcchhhCccccccccCCCCcHHHHHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHhCCeEEEeeccccCchhhHHHHHH
Confidence 999999999875421 111 111111 2344568999999999864432222333333
Q ss_pred HHHHhccccceeceec-----cccCCChhhHHHHHHHHHH-cCCCeEEEEEecCCCccCCHHHHHHHHHHH-HHcCCcEE
Q 014320 160 YEKKAKNSCMDYGFHM-----AITKWDEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRC-KSLGALAM 232 (427)
Q Consensus 160 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a-~~~g~~v~ 232 (427)
......+......... ......++.++...+..+. .....+............+..........+ ...++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (325)
T d2ooda2 81 ASRRNMRVIAGLTGIDRNAPAEFIDTPENFYRDSKRLIAQYHDKGRNLYAITPRFAFGASPELLKACQRLKHEHPDCWVN 160 (325)
T ss_dssp HHHHTCCEEECCEECCSSSCTTTCCCHHHHHHHHHHHHHHHTTBTTEEEEEEECBGGGCCHHHHHHHHHHHHHCTTSEEE
T ss_pred HHhhcccceeeeeccCCCCCcccccCHHHHHHHHHHHHHhhccccceeeeeecccccccCHHHHHHHHhhHhhccCCcee
Confidence 3433333222211111 1111122333444443322 233344444445555666777666655544 44688899
Q ss_pred Eec-CChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEE
Q 014320 233 VHA-ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVI 311 (427)
Q Consensus 233 ~H~-e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~ 311 (427)
.|+ +...++....+. .+... .....+......+.+....|...... +.+..+.+.+..+.
T Consensus 161 ~~~~e~~~e~~~~~~~---~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 221 (325)
T d2ooda2 161 THISENPAECSGVLVE---HPDCQ---------------DYLGVYEKFDLVGPKFSGGHGVYLSN-NEFRRMSKKGAAVV 221 (325)
T ss_dssp EECSCCHHHHHHHHHH---CTTCS---------------SHHHHHHTTTCCSTTEEEECCTTCCH-HHHHHHHHHTCEEE
T ss_pred eehhccHHHHHHHHHh---cccCc---------------chHHHHHhcCcccCceeeeeeeeech-hhhhhhhccccccc
Confidence 996 665555443221 11100 00011112223345677888876554 55667777776555
Q ss_pred EecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCc
Q 014320 312 GEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVN 391 (427)
Q Consensus 312 ~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~ 391 (427)
. +|.........+ +|.+ .....+.|+.++++||..+..... ++
T Consensus 222 ~--~~~~~~~~~~~~--------------~~~~-------~~~~~~~gv~~~~gtD~~~~~~~~-------~~------- 264 (325)
T d2ooda2 222 F--CPCSNLFLGSGL--------------FRLG-------RATDPEHRVKMSFGTDVGGGNRFS-------MI------- 264 (325)
T ss_dssp E--CHHHHHHTTCCC--------------CCHH-------HHTCTTSCCEEEECCCBTTBSCCC-------HH-------
T ss_pred c--ccchhhcccccc--------------CcHH-------HHHHhhcCCceEeecCcccCCCcc-------HH-------
Confidence 4 543222211111 1110 111346799999999975543211 00
Q ss_pred hhhHhHHHHH------------------HHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 392 GIEERMHLVW------------------DTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 392 ~~e~~l~~~~------------------~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
.+.+....+ .....+.++|+.|+++++|.|||+.
T Consensus 265 -~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~eal~~AT~ngA~a 316 (325)
T d2ooda2 265 -SVLDDAYKVGMCNNTLLDGSIDPSRKDLAEAERNKLSPYRGFWSVTLGGAEG 316 (325)
T ss_dssp -HHHHHHHHHHHHHHHHSSSSSCGGGCCHHHHHHTCCCHHHHHHHTTHHHHHH
T ss_pred -HHHHHHHHHHHhhcccccccccchhhhhhccccCCCCHHHHHHHHHHHHHHH
Confidence 011111110 0123457899999999999999974
|
| >d2puza2 c.1.9.17 (A:80-380) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.33 E-value=4.3e-11 Score=108.31 Aligned_cols=140 Identities=19% Similarity=0.131 Sum_probs=81.1
Q ss_pred ccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEE
Q 014320 210 FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV 289 (427)
Q Consensus 210 ~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~ 289 (427)
.....+.++.+++.+.+.|+++..|+......... ....+.+. ..+.
T Consensus 153 ~~~~~~~~~~~~~~a~~~g~~~~~h~~~~~~~~~~--------------------------------~~~~~~~~-~~~~ 199 (301)
T d2puza2 153 IAFSVKEIDRVFAAAQQRGLPVKLHAEQLSNLGGA--------------------------------ELAASYNA-LSAD 199 (301)
T ss_dssp TSBCHHHHHHHHHHHHHTTCCBEEEESSSSCCSHH--------------------------------HHHHHTTC-SEEE
T ss_pred cccCHHHHHHHHHHHHHCCCceeeecccccchhHH--------------------------------HHHhhhcc-ceee
Confidence 44678999999999999999999997544322111 11111222 2233
Q ss_pred cCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCC
Q 014320 290 HVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHC 369 (427)
Q Consensus 290 H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~ 369 (427)
|...... +....+++.|..+.+..++..... . . ..+| ++++++.|+.+++|||+.
T Consensus 200 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~-----------~---~~~~---------~~~~~~~Gv~v~lGTD~~ 254 (301)
T d2puza2 200 HLEYLDE-TGAKALAKAGTVAVLLPGAFYALR-E-----------K---QLPP---------VQALRDAGAEIALATDCN 254 (301)
T ss_dssp ECTTCCH-HHHHHHHHHTCEEEECHHHHHHHT-C-----------C---CCCC---------HHHHHHHTCCEEECCCCC
T ss_pred eeecchH-HHHHHHHhcCCeeeeccchhhhhc-c-----------c---ccch---------HHHHHHCCCeEEEEeCCC
Confidence 4333222 334555666766665333221100 0 0 1133 466888999999999975
Q ss_pred CCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 370 AFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 370 p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
+...... .+...+..++.+.++|+.|+++++|.||||.
T Consensus 255 ~~~~~~~-------------------~l~~~~~~~~~~~gl~~~eal~~aT~~~A~~ 292 (301)
T d2puza2 255 PGTSPLT-------------------SLLLTMNMGATLFRMTVEECLTATTRNAAKA 292 (301)
T ss_dssp SSSCCBC-------------------CHHHHHHHHHHHHCCCHHHHHHHTTHHHHHH
T ss_pred CCCCccc-------------------hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 5321110 1122222234456799999999999999984
|
| >d1gkpa1 b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermus sp. [TaxId: 275]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Thermus sp. [TaxId: 275]
Probab=99.32 E-value=7.5e-13 Score=103.65 Aligned_cols=62 Identities=31% Similarity=0.506 Sum_probs=54.8
Q ss_pred EEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEecccccccccccc
Q 014320 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAM 116 (427)
Q Consensus 55 ~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~ 116 (427)
++|+|++|++++...+++|+|+||||++||++...+.+.++||++|++|+||..+.|.|...
T Consensus 2 llIkng~iv~~~~~~~~Di~I~~gkI~~Ig~~l~~~~~~~viDa~G~~v~~g~d~~~~d~~~ 63 (123)
T d1gkpa1 2 LLIKNGEIITADSRYKADIYAEGETITRIGQNLEAPPGTEVIDATGKYVFPGADLVVYDPQY 63 (123)
T ss_dssp EEEESCEEEETTEEEECEEEESSSBCCEEESCCCCCTTCEEEECTTSEEEECCCEEEEETTC
T ss_pred EEEECcEEECCCCCEEeeEEEECCEEEEeecCCCCCcchhhhhhccceEecCcceEEEeccc
Confidence 69999999999888899999999999999998776777899999999999999766666543
|
| >d2bb0a2 c.1.9.17 (A:74-373) Imidazolonepropionase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Bacillus subtilis [TaxId: 1423]
Probab=99.32 E-value=1.9e-11 Score=110.87 Aligned_cols=141 Identities=13% Similarity=0.103 Sum_probs=83.6
Q ss_pred CccCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEE
Q 014320 209 SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV 288 (427)
Q Consensus 209 ~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i 288 (427)
....+.+.+..+.+.+++.++++..|+......... ....+.+. ..+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~--------------------------------~~~~~~~~-~~~ 197 (300)
T d2bb0a2 151 TGVFTVSQSRRYLQKAAEAGFGLKIHADEIDPLGGA--------------------------------ELAGKLKA-VSA 197 (300)
T ss_dssp TTSBCHHHHHHHHHHHHHTTCEEEEEECSSSCCSHH--------------------------------HHHHHTTC-SEE
T ss_pred cccCCHHHHHHHHHHHHhhhhcccccccchhhhHHH--------------------------------HHHHHhCC-ceE
Confidence 345688899999999999999999997543221110 11112232 235
Q ss_pred EcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCC
Q 014320 289 VHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDH 368 (427)
Q Consensus 289 ~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~ 368 (427)
.|...... +.++...+.+..+.. ||...+. +.. . ..+| +.++++.|+.+++|||+
T Consensus 198 ~~~~~~~~-~~~~~~~~~~~~~~~--~~~s~~~----l~~-------~--~~~~---------~~~l~~~Gv~v~lgTD~ 252 (300)
T d2bb0a2 198 DHLVGTSD-EGIKKLAEAGTIAVL--LPGTTFY----LGK-------S--TYAR---------ARAMIDEGVCVSLATDF 252 (300)
T ss_dssp EECTTCCH-HHHHHHHHHTCEEEE--CHHHHHH----TTC-------C--CCCC---------HHHHHHTTCCEEECCCB
T ss_pred EEeeeccH-HHHHHHHhcCcceee--cchhhhh----hhc-------c--cccc---------HHHHHHCCCEEEEEeCC
Confidence 56555432 445666777766665 5532110 000 0 0122 46688999999999997
Q ss_pred CCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 369 CAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 369 ~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
.+...... .+...+...+...++|+.|+++++|.||||.
T Consensus 253 ~~~~~~~~-------------------~l~~~~~~a~~~~gl~~~eal~~aT~~~A~~ 291 (300)
T d2bb0a2 253 NPGSSPTE-------------------NIQLIMSIAALHLKMTAEEIWHAVTVNAAYA 291 (300)
T ss_dssp BTTTBCCC-------------------CHHHHHHHHHHHSCCCHHHHHHHTTHHHHHH
T ss_pred CCCCCchh-------------------hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 54322111 1111121234456899999999999999984
|
| >d2q09a2 c.1.9.17 (A:66-366) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Probable 4-imidazolone-5-propanoate amidohydrolase GOS 1928421 species: Environmental samples
Probab=99.31 E-value=1e-11 Score=111.73 Aligned_cols=139 Identities=13% Similarity=0.058 Sum_probs=82.7
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEc
Q 014320 211 MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH 290 (427)
Q Consensus 211 ~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H 290 (427)
.............++..+..+.+|+........ .......+. ..+.|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~--------------------------------~~~~~~~~~-~~~~~ 200 (301)
T d2q09a2 154 GFSLAQTEQVYLAADQYGLAVKGHMDQLSNLGG--------------------------------STLAANFGA-LSVDH 200 (301)
T ss_dssp SBCHHHHHHHHHHHHHTTCEEEEEESSSCCCSH--------------------------------HHHHHHTTC-SEEEE
T ss_pred ccchhhHHHHHHHHHHhcccceecccccchhHH--------------------------------HHHHHhcCC-ceEee
Confidence 345666777778888889999999743221100 011112222 34666
Q ss_pred CCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCC
Q 014320 291 VMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCA 370 (427)
Q Consensus 291 ~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p 370 (427)
...... +.++.+++.|..++. ||...+...+. ..|| ++++.+.|+.+++|||+.|
T Consensus 201 ~~~~~~-~~~~~~~~~~~~~~~--~~~s~~~l~~~-------------~~~~---------~~~l~~aGv~v~lGTD~~~ 255 (301)
T d2q09a2 201 LEYLDP-EGIQALAHRGVVATL--LPTAFYFLKET-------------KLPP---------VVALRKAGVPMAVSSDINP 255 (301)
T ss_dssp CTTCCH-HHHHHHHHHTCEEEE--CHHHHHHTTCC-------------CCCC---------HHHHHHTTCCEEECCCCBT
T ss_pred eecCcH-HHHHHHHHcCCCccc--CccHHhhhccc-------------ccCc---------HHHHHHCCCeEEEEeCCCC
Confidence 665443 556777888877765 66432211110 1233 4568899999999999765
Q ss_pred CChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 371 FNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
...... .+...+...++..++|+.|+++++|.||||+
T Consensus 256 ~~~~~~-------------------~l~~~~~~~~~~~glt~~eal~~aT~~~A~~ 292 (301)
T d2q09a2 256 GTAPIV-------------------SLRMAMNMACTLFGLTPVEAMAGVTRHAARA 292 (301)
T ss_dssp TTBCCC-------------------CHHHHHHHHHHHHCCCHHHHHHHTTHHHHHH
T ss_pred CCCCcc-------------------hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 332110 1112222234456799999999999999984
|
| >d1ra0a2 c.1.9.5 (A:56-375) Cytosine deaminase catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Cytosine deaminase catalytic domain domain: Cytosine deaminase catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.29 E-value=5.4e-12 Score=115.79 Aligned_cols=266 Identities=14% Similarity=0.040 Sum_probs=132.8
Q ss_pred ccccccccccCcCC-----------------------CCChhhHHH----HHHHHHcCCceEEecCcCCCCCc--HHHHH
Q 014320 107 GIDPHTHLAMEFMG-----------------------SETIDDFFS----GQAAALAGGTTMHIDFVIPINGS--LTAGF 157 (427)
Q Consensus 107 ~ID~H~H~~~~~~g-----------------------~~~~e~~~~----~~~~~l~~GvTtv~d~~~~~~~~--~~~~~ 157 (427)
|||+|+|+.+++.+ ..++++++. +.+.++++||||+.|+....... .....
T Consensus 2 FID~H~Hl~~~~~~~~~~~~~~g~l~e~i~~~~~~~~~~t~ed~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~ 81 (320)
T d1ra0a2 2 FVEPHIHLDTTQTAGQPNWNQSGTLFEGIERWAERKALLTHDDVKQRAWQTLKWQIANGIQHVRTHVDVSDATLTALKAM 81 (320)
T ss_dssp EEEEEECTTTTTCTTSSSCCSSCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTEEEEEEEEECCSTTCHHHHHH
T ss_pred CeecCcCcchhcccCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCeEEEEeccccccchHHHHHHH
Confidence 99999998654321 113444432 34668999999999986543321 11122
Q ss_pred HHHHHHhcc-ccceeceec-cccCCChhhHHHHHHHHHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEec
Q 014320 158 EAYEKKAKN-SCMDYGFHM-AITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA 235 (427)
Q Consensus 158 ~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~ 235 (427)
...+..... ..+...... .......+......+.. ..+...++...........+.+.++.+++.|++.|+++.+|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~~~~h~ 160 (320)
T d1ra0a2 82 LEVKQEVAPWIDLQIVAFPQEGILSYPNGEALLEEAL-RLGADVVGAIPHFEFTREYGVESLHKTFALAQKYDRLIDVHC 160 (320)
T ss_dssp HHHHHHHTTTCEEEEEEECTTCSSSSTTHHHHHHHHH-HTTCSEECCCGGGSSSHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHhhcccccccccccccccccCcHHHHHHHHHHH-HhcccccccCCCCCCCccccHHHHHHHHHHHHHcCCCeeeee
Confidence 222222111 111111111 11112233344455555 455555543222222333467889999999999999999997
Q ss_pred -CChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCC------HHHHHHHHHHhhcCC
Q 014320 236 -ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS------MDAMEEIAKARKAGQ 308 (427)
Q Consensus 236 -e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~------~~~~~~i~~~~~~G~ 308 (427)
+......... ...... ........+..+.|... ....+.+..+++.|+
T Consensus 161 ~~~~~~~~~~~------------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 215 (320)
T d1ra0a2 161 DEIDDEQSRFV------------------------ETVAAL-AHHEGMGARVTASHTTAMHSYNGAYTSRLFRLLKMSGI 215 (320)
T ss_dssp CCSSCTTCCHH------------------------HHHHHH-HHHHTCGGGEEEEECGGGGGSCHHHHHHHHHHHHHHTC
T ss_pred cccchhHHHhh------------------------hhHHHH-HHHhhcccccccccceeccccchhhhHHHHHHhhhcCc
Confidence 3332221110 000000 11111222344554421 223455677788887
Q ss_pred CEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCC
Q 014320 309 RVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPN 388 (427)
Q Consensus 309 ~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~ 388 (427)
.+.. +|.......... ...+..+.. ....++++.|+.+.++||+...... +.
T Consensus 216 ~~~~--~p~~~~~~~~~~-----------~~~~~~~~~---~~~~~~~~~G~~v~~gtd~~~~~~~------------~~ 267 (320)
T d1ra0a2 216 NFVA--NPLVNIHLQGRF-----------DTYPKRRGI---TRVKEMLESGINVCFGHDGVFDPWY------------PL 267 (320)
T ss_dssp EEEE--CHHHHHHHTTTT-----------CCSSCCCCC---CCHHHHHHTTCCEEECCBCSSBTTB------------SC
T ss_pred EEEe--ccchhhhhcccc-----------ccccccccc---CchhhHhhcCceEeecCCcCCCCCC------------CC
Confidence 7765 554221111110 001111111 1246688889999999997442211 12
Q ss_pred CCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 389 GVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 389 G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
+.......+...+......+.+|+.|+++++|.||||.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~s~~eal~~aT~ngA~a 305 (320)
T d1ra0a2 268 GTANMLQVLHMGLHVCQLMGYGQINDGLNLITHHSART 305 (320)
T ss_dssp CCCCHHHHHHHHHHHTTCCSHHHHHGGGGGGTHHHHHH
T ss_pred CChhHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHH
Confidence 22222223332222222345689999999999999983
|
| >d1m7ja1 b.92.1.6 (A:7-61) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: D-aminoacylase domain: N-acyl-D-aminoacid amidohydrolase species: Alcaligenes faecalis [TaxId: 511]
Probab=99.23 E-value=1.4e-11 Score=81.90 Aligned_cols=52 Identities=29% Similarity=0.444 Sum_probs=45.5
Q ss_pred ccEEEECcEEEcCCC--ceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEec
Q 014320 53 SKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMP 105 (427)
Q Consensus 53 ~~~~i~~~~i~~~~~--~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~P 105 (427)
.|++|+|++|+++.+ ...++|+|+||||++|++... .++.++||++|++|+|
T Consensus 2 ~DllIkn~~i~d~~~~~~~~~di~I~~g~I~~Ig~~~~-~~~~~vIDa~G~~v~P 55 (55)
T d1m7ja1 2 FDYILSGGTVIDGTNAPGRLADVGVRGDRIAAVGDLSA-SSARRRIDVAGKVVSP 55 (55)
T ss_dssp BSEEEESSEECCSSSCCCEECEEEEETTEEEEEECCTT-SCBSCEEECTTCEEEE
T ss_pred CcEEEECCEEECCCCCceeEEEEEEECCEEEEEccCCC-CCCCEEEECCCCEECC
Confidence 689999999999775 467899999999999998654 3567899999999998
|
| >d1bf6a_ c.1.9.3 (A:) Phosphotriesterase homology protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Phosphotriesterase-like domain: Phosphotriesterase homology protein species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=3.4e-10 Score=103.29 Aligned_cols=258 Identities=15% Similarity=0.102 Sum_probs=136.5
Q ss_pred cccccccccccCcC--------CCCChhhHHHHHHHHHcCCceEEecCcCCCCC-cHHHHHHHHHHHhccccceeceecc
Q 014320 106 GGIDPHTHLAMEFM--------GSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMA 176 (427)
Q Consensus 106 G~ID~H~H~~~~~~--------g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (427)
|++|+|+|+...+. .....+........+.+.||+++++....... ......+..++.+.+.....+++..
T Consensus 6 G~~dtH~Hl~~d~~~~~~d~~~~~d~~~~~~~~l~~~~~~Gv~~iV~~t~~~~g~d~~~~~~la~~~~~~i~~~~G~hp~ 85 (291)
T d1bf6a_ 6 GYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYYQD 85 (291)
T ss_dssp SEEEEEECSSEECHHHHTCGGGEECCHHHHHHHHHHHHHTTEEEEEECCCGGGTCCHHHHHHHHHHHCCEEEEEECCCCG
T ss_pred cceeeccCccCChhHhccChHhhhhhHHHHHHHHHHHHHcCCCEEEEcCCCccccCHHHHHHHHHHcCCCeeeeeeecCc
Confidence 89999999853210 01122334444567788999999986432222 2333333333333334444444422
Q ss_pred ccC------CC-hhhHHHHHHHHHHcCC-------CeEEEEE-ecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChhhH
Q 014320 177 ITK------WD-EVVSDEMEVMVKEKGI-------NSFKFFM-AYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAV 241 (427)
Q Consensus 177 ~~~------~~-~~~~~~~~~l~~~~g~-------~~ik~~~-~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~ 241 (427)
... .+ ++..+.+.+.+ ..+. ..++... ++........+.+++.++.|+++|+||.+|+......
T Consensus 86 ~~~p~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~IGe~g~d~~~~~~~q~~~f~~~~~~A~~~~lPv~iH~r~~~~~ 164 (291)
T d1bf6a_ 86 AFFPEHVATRSVQELAQEMVDEI-EQGIDGTELKAGIIAEIGTSEGKITPLEEKVFIAAALAHNQTGRPISTHTSFSTMG 164 (291)
T ss_dssp GGCCTHHHHSCHHHHHHHHHHHH-HTCSTTSSCCEEEEEEEECBTTBCCHHHHHHHHHHHHHHHHHCCCEEEECGGGCSH
T ss_pred ccCCcccCcCCHHHHHHHHHHHH-HHHHhccCceEEEEEeeccccCCCCHHHHHHHHHHHHHHHHhCCCeEEeccchhhh
Confidence 111 11 11122222222 1221 1244332 2221111223568889999999999999998543322
Q ss_pred HHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceee
Q 014320 242 FEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVL 321 (427)
Q Consensus 242 ~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~ 321 (427)
.+..+.+.+.|.. ..+..+.|+......+.++++.+.|..+..+......
T Consensus 165 ~e~~~~l~~~~~~----------------------------~~~~~~~H~~f~~~~e~~~~~~~~G~~i~~~g~~~~~-- 214 (291)
T d1bf6a_ 165 LEQLALLQAHGVD----------------------------LSRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIGKNS-- 214 (291)
T ss_dssp HHHHHHHHHTTCC----------------------------GGGEEECCCCSSCCHHHHHHHHHTTCEEEECCTTCTT--
T ss_pred HHHHHHHHHhCCC----------------------------cccceecccCCCCCHHHHHHHHhcCeeEEeccccccc--
Confidence 2333334433331 1245677884333468888888999766653332100
Q ss_pred CcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCC--ceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHH
Q 014320 322 DDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGI--LQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHL 399 (427)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~--~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~ 399 (427)
.+|. ....+.+.++++.+- .+.++||. |+....+.. |-++....++.
T Consensus 215 ------------------~~~~--~~~~~~~~~lv~~~p~drilleTD~-p~~~p~~~~----------g~~~~~~~~~~ 263 (291)
T d1bf6a_ 215 ------------------YYPD--EKRIAMLHALRDRGLLNRVMLSMDI-TRRSHLKAN----------GGYGYDYLLTT 263 (291)
T ss_dssp ------------------TSCH--HHHHHHHHHHHHTTCGGGEEECCCC-CSGGGSGGG----------TSCCTTHHHHT
T ss_pred ------------------CCcH--HHhHHHHHHHHHhCCchhEEEecCC-CCccccccC----------CCCCchhHHHH
Confidence 1111 123356778888774 58999994 664332221 22233333333
Q ss_pred HHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 400 VWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 400 ~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
....+.+ .++|.+++-++++.||+|+
T Consensus 264 ~~~~l~~-~g~s~e~i~~i~~~Np~rl 289 (291)
T d1bf6a_ 264 FIPQLRQ-SGFSQADVDVMLRENPSQF 289 (291)
T ss_dssp HHHHHHH-TTCCHHHHHHHHTHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHHHHH
Confidence 3333333 5799999999999999985
|
| >d2icsa2 c.1.9.14 (A:55-321) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Adenine deaminase-like domain: Putative adenine deaminase EF0837 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.20 E-value=1.9e-11 Score=107.60 Aligned_cols=127 Identities=13% Similarity=-0.017 Sum_probs=65.2
Q ss_pred cccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceece--eccc-----c
Q 014320 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGF--HMAI-----T 178 (427)
Q Consensus 106 G~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~ 178 (427)
||||+|+|+..+ +..++++. .+.++++||||++|+............+..+............ .... .
T Consensus 1 GlID~H~H~~~~--~~~~~~~~---~~~~l~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (267)
T d2icsa2 1 GWIDDHVHCFEK--MALYYDYP---DEIGVKKGVTTVIDAGTTGAENIHEFYDLAQQAKTNVFGLVNISKWGIVAQDELA 75 (267)
T ss_dssp CEEEEEECCCTT--SSSSCCCH---HHHTGGGTEEEEEEESSSCTTTHHHHHHHHHTSSSEEEEEEESSTTTTSSSCTTS
T ss_pred CeEEeCcCCCCC--CCcchhhH---HHHHhCCeeEEEECCCCCChhHHHHHHHHHHhhhcchhhcccccccccccccccC
Confidence 899999999776 55555554 5678999999999987654433333333322221111100000 0000 0
Q ss_pred CCChhhHHHHHHHHHHcCCCeEEEEEec---CCCccC-CHHHHHHHHHHHHHcCCcEEEecCCh
Q 014320 179 KWDEVVSDEMEVMVKEKGINSFKFFMAY---KGSFMI-NDELLIEGFKRCKSLGALAMVHAENG 238 (427)
Q Consensus 179 ~~~~~~~~~~~~l~~~~g~~~ik~~~~~---~~~~~~-~~~~l~~~~~~a~~~g~~v~~H~e~~ 238 (427)
.......+...+.. ..+.+.++.+... .+.... ..+..+.....++..++.+..|....
T Consensus 76 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 138 (267)
T d2icsa2 76 DLSKVQASLVKKAI-QELPDFVVGIKARMSRTVIGDNGITPLELAKQIQQENQEIPLMVHIGSA 138 (267)
T ss_dssp SGGGCCHHHHHHHH-HHCTTTEEEEEEEESHHHHTTCTTHHHHHHHHHHHTTTTCCEEEEECSS
T ss_pred ChhhcCHHHHHHHH-hhhhhhhhhhhhhhcccccccCCcHHHHHHHHHHHHhcccceeeecccc
Confidence 01111234445544 4444544443332 111222 34444455556667889999997543
|
| >d1kcxa1 b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidinase related protein-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.19 E-value=2e-11 Score=97.57 Aligned_cols=64 Identities=31% Similarity=0.561 Sum_probs=58.2
Q ss_pred cEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccc-cccccccccC
Q 014320 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGG-IDPHTHLAME 117 (427)
Q Consensus 54 ~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~-ID~H~H~~~~ 117 (427)
.++|+|++|++++....++|+|+||+|++||+....+.+.++||+.|++++||. .|+|.|+..+
T Consensus 2 k~lIkng~iv~~~~~~~~DilIedG~I~~Ig~~l~~~~~a~vIDa~G~~v~~~~G~dAdl~i~Dp 66 (142)
T d1kcxa1 2 RLLIRGGRIINDDQSFYADVYLEDGLIKQIGENLIVPGGVKTIEANGRMVIIAVGSDADVVIWDP 66 (142)
T ss_dssp CEEEESCEEECSSCEEECEEEEETTEEEEEESSCCSCSSCEEEECTTCEEECCTTSBCCEEEEEE
T ss_pred cEEEECCEEECCCCcEEeeEEEECCEEeEEeccCCCCccceeechhhcceeecccccceEEEEec
Confidence 379999999998887889999999999999987766667899999999999997 9999999876
|
| >d2p9ba2 c.1.9.17 (A:71-394) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Uncharacterized protein BL1453 species: Bifidobacterium longum [TaxId: 216816]
Probab=99.09 E-value=2.2e-10 Score=103.32 Aligned_cols=59 Identities=14% Similarity=0.114 Sum_probs=38.9
Q ss_pred HHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 349 NKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 349 ~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
...+.++.+.|+.+++|||.. ..... +. .+..-+..+++..++|+.|+++++|.||||.
T Consensus 257 ~~~~~~~~~~Gv~v~~GtD~~-~~~~~-------------~~-----~l~~el~~~~~~~Gls~~eaL~~aT~n~A~~ 315 (324)
T d2p9ba2 257 VSGARQAHEAGLMIGVGTDTG-MTFVP-------------QY-----ATWRELELLVAYAGFSPAEALHAATAVNASI 315 (324)
T ss_dssp HHHHHHHHHTTCCBCCCCCTT-STTSC-------------TT-----CHHHHHHHHHHHHCCCHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHcCCeEEEEeCCC-CCcCh-------------hh-----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 345778889999999999952 22110 11 1111111234446799999999999999984
|
| >d2ftwa1 b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.07 E-value=1.5e-10 Score=93.26 Aligned_cols=65 Identities=38% Similarity=0.526 Sum_probs=57.1
Q ss_pred ccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEecc-ccccccccccC
Q 014320 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPG-GIDPHTHLAME 117 (427)
Q Consensus 53 ~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG-~ID~H~H~~~~ 117 (427)
..++|+||+|++.+....++|+|+||+|.+|+.+...+.++++||+.|++++|+ ..|+|+|+..+
T Consensus 2 ~~iLIkng~iv~~~~~~~~DIlI~~G~I~~I~~~i~~~~~~~iida~gk~v~i~~G~dad~~i~dp 67 (150)
T d2ftwa1 2 GTILIKNGTVVNDDRYFKSDVLVENGIIKEISKNIEPKEGIKVVDATDKLLLIDVGCDGDIVIWDP 67 (150)
T ss_dssp CCEEEESCEEECSSCEEECEEEEETTEEEEEESCCCCCSSCCEEECTTCEEECSTTSBCCEEEEEE
T ss_pred CCEEEECCEEECCCCcEEeeEEEECCEEEEEeccCCCCCccEEEecccceeeeecCccCceEEEec
Confidence 358999999999888888999999999999998876666789999999988555 69999999876
|
| >d2qs8a2 c.1.9.18 (A:64-373) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Xaa-Pro dipeptidase species: Alteromonas macleodii [TaxId: 28108]
Probab=98.98 E-value=1.4e-09 Score=97.70 Aligned_cols=55 Identities=16% Similarity=0.211 Sum_probs=37.6
Q ss_pred HHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 350 KALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 350 ~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
..++++.+.|+.+++|||+ |..+.... -.| +..+ .+.++|+.|+++++|.||||.
T Consensus 248 ~~~~~l~~~Gv~v~lGTD~-~~~~~~~~--------------~~e------l~~~-~~~Gls~~eaL~~aT~~~A~~ 302 (310)
T d2qs8a2 248 DTFRKAYEKGVKIAFGTDA-GVQKHGTN--------------WKE------FVYM-VENGMPAMKAIQSATMETAKL 302 (310)
T ss_dssp HHHHHHHHHTCCBCCCCCB-TTBCTTCT--------------THH------HHHH-HHTTCCHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHCCCeEEEecCC-CCCCccHH--------------HHH------HHHH-HHcCCCHHHHHHHHHHHHHHH
Confidence 4577889999999999997 33221110 011 1112 245799999999999999984
|
| >d3be7a2 c.1.9.18 (A:57-359) Zn-dependent arginine carboxypeptidase {Unidentified organism [TaxId: 32644]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Zn-dependent arginine carboxypeptidase species: Unidentified organism [TaxId: 32644]
Probab=98.93 E-value=9.1e-09 Score=91.87 Aligned_cols=56 Identities=14% Similarity=0.146 Sum_probs=37.4
Q ss_pred HHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 349 NKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 349 ~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
...++++.+.|+.+++|||+... +.... -.|.. .+ .+.++|+.|+++++|.||||.
T Consensus 241 ~~~~~~l~~aGv~v~lGTD~~~~-~~~~~--------------~~el~------~~-~~~Gls~~eaL~~aT~n~A~~ 296 (303)
T d3be7a2 241 RENFMNAHRRGAIITFGTDAGIF-DHGDN--------------AKQFA------YM-VEWGMTPLEAIQASTIKTATL 296 (303)
T ss_dssp HHHHHHHHHHTCCEECCCCBTTB-CTTCG--------------GGHHH------HH-HHTTCCHHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHCCCeEEEEeCCCCc-ccHHH--------------HHHHH------HH-HHcCCCHHHHHHHHHHHHHHH
Confidence 34567788999999999996322 11110 01211 12 245799999999999999984
|
| >d2r8ca2 c.1.9.18 (A:58-368) Uncharacterized protein EAJ56179 {Unidentified organism [TaxId: 32644]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Uncharacterized protein EAJ56179 species: Unidentified organism [TaxId: 32644]
Probab=98.91 E-value=7.2e-09 Score=93.06 Aligned_cols=55 Identities=11% Similarity=0.117 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 349 NKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 349 ~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
...++++.+.|+.+++|||. |..+.... -.| + .+.. .++|+.|+++++|.||||.
T Consensus 249 ~~~~~~l~~aGv~v~~GTD~-~~~~~~~~--------------~~e------l-~~~~-~gls~~eaL~~ATi~~A~a 303 (311)
T d2r8ca2 249 LHSIEIMKRAGVKMGFGTDL-LGEAQRLQ--------------SDE------F-RILA-EVLSPAEVIASATIVSAEV 303 (311)
T ss_dssp HHHHHHHHHTTCEECCCCCC-CGGGGGGT--------------THH------H-HHHT-TTSCHHHHHHHTTHHHHHH
T ss_pred hHHHHHHHHCCCeEEEEeCC-CCCchHHH--------------HHH------H-HHHH-cCCCHHHHHHHHHHHHHHH
Confidence 45678899999999999996 33221110 011 1 1222 3799999999999999984
|
| >d4ubpc1 b.92.1.1 (C:1-131,C:435-483) alpha-Subunit of urease {Bacillus pasteurii [TaxId: 1474]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: alpha-Subunit of urease domain: alpha-Subunit of urease species: Bacillus pasteurii [TaxId: 1474]
Probab=98.83 E-value=4e-09 Score=84.20 Aligned_cols=82 Identities=20% Similarity=0.260 Sum_probs=67.1
Q ss_pred CccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCC------------CCCceEEeCCCCEEeccccccccccccCcC
Q 014320 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~------------~~~~~viD~~g~~v~PG~ID~H~H~~~~~~ 119 (427)
..|++|.|+-|++..++..++|-|+||||+.||..... ...+++|.++|+++.||.||.|+|+.+.
T Consensus 66 ~~d~vitn~~i~d~~Gi~KadiGikdG~I~giGkaGNPd~mdgV~~~~vig~~Teviageg~I~TagvIdthvHFp~q-- 143 (180)
T d4ubpc1 66 VLDLLLTNALILDYTGIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKIVTALVLWEPKFFGVK-- 143 (180)
T ss_dssp BCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECCBCTTTCTTCCTTCBCCTTCEEEECTTCEEEEEEEECGGGTTTS--
T ss_pred cceEEEeeEEEecCCCeEEeeeeeecCEEEEeeccCCccccCCCCCCeEEcCCceEEecCCceEEEEEEeehhhcCCC--
Confidence 46899999999998888999999999999999975321 2467899999999999999999998432
Q ss_pred CCCChhhHHHHHHHHHcCCceEEecCc
Q 014320 120 GSETIDDFFSGQAAALAGGTTMHIDFV 146 (427)
Q Consensus 120 g~~~~e~~~~~~~~~l~~GvTtv~d~~ 146 (427)
...++++|+|+..-+.
T Consensus 144 -----------pe~aLksG~tt~Gp~g 159 (180)
T d4ubpc1 144 -----------ADRVIKGGIIAYAQIG 159 (180)
T ss_dssp -----------CSEEEETTEEEEEEEC
T ss_pred -----------HHHHHhcCceeEccCC
Confidence 1236889999986554
|
| >d1yrra2 c.1.9.10 (A:54-350) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain domain: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.76 E-value=1.4e-08 Score=90.49 Aligned_cols=43 Identities=19% Similarity=0.067 Sum_probs=32.4
Q ss_pred cccccccccccC-----cCCCCChhhHHHHHHHHHcCCceEEecCcCC
Q 014320 106 GGIDPHTHLAME-----FMGSETIDDFFSGQAAALAGGTTMHIDFVIP 148 (427)
Q Consensus 106 G~ID~H~H~~~~-----~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~ 148 (427)
||||+|+|+... ..+..+++.+...++.++++||||++|+...
T Consensus 1 GlID~H~H~~~g~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~ 48 (297)
T d1yrra2 1 GFIDVQLNGCGGVQFNDTAEAVSVETLEIMQKANEKSGCTNYLPTLIT 48 (297)
T ss_dssp CEEEEEESEETTEESSSSTTTSSHHHHHHHHHHHHHTTEEEEEEEEEC
T ss_pred CEEeHhhCCcCCCCCCCCcccCCHHHHHHHHHHHHccCeEEEeCCCCC
Confidence 899999996331 0144567777778888999999999986543
|
| >d1xrta1 b.92.1.3 (A:1-55,A:366-422) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Two-domain dihydroorotase species: Aquifex aeolicus [TaxId: 63363]
Probab=98.53 E-value=9.3e-08 Score=72.94 Aligned_cols=55 Identities=29% Similarity=0.498 Sum_probs=46.7
Q ss_pred CccEEEECcEEEcCCC--ceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEeccc
Q 014320 52 SSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGG 107 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~--~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ 107 (427)
|+.++|+|++|+|+.. ....+|+|++|+|++|++..+.+ .+++||+.|+++.||+
T Consensus 1 m~~~likng~viDp~~g~~~~~DllI~~GkI~~I~~~i~~~-~a~viD~~g~~~~~~l 57 (112)
T d1xrta1 1 MLKLIVKNGYVIDPSQNLEGEFDILVENGKIKKIDKNILVP-EAEIIDAKGLIVCPTL 57 (112)
T ss_dssp CCEEEEESCEEEEGGGTEEEECEEEEETTEEEEEESSCCCS-SEEEEECTTSEEEECC
T ss_pred CceeEEeCeEEECCCCCccceeeEEEECCEEEEeecCCCcc-cceEEehhccccccee
Confidence 3568999999999776 34689999999999999865543 4689999999999998
|
| >d1e9yb1 b.92.1.1 (B:1-131,B:432-480) alpha-Subunit of urease {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: alpha-Subunit of urease domain: alpha-Subunit of urease species: Helicobacter pylori [TaxId: 210]
Probab=98.50 E-value=2.6e-07 Score=73.64 Aligned_cols=66 Identities=20% Similarity=0.272 Sum_probs=57.3
Q ss_pred CccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCC------------CCCceEEeCCCCEEeccc----cccccccc
Q 014320 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGG----IDPHTHLA 115 (427)
Q Consensus 52 ~~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~------------~~~~~viD~~g~~v~PG~----ID~H~H~~ 115 (427)
..|++|.|+.|++..++..++|-|+||||+.||+.... ...+++|.++|+++.||- ||.|+|.-
T Consensus 65 ~~D~vitna~iid~~Gi~kadiGikdG~I~~iGkaGnPd~mdgv~~~~iig~~Tevi~geg~I~TaGADlVlwd~h~hgI 144 (180)
T d1e9yb1 65 ELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGADLVLWSPAFFGV 144 (180)
T ss_dssp CCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECCBCTTTSSSCCGGGBCCTTCEEEECTTCEEEECCCEEEECTTTTTT
T ss_pred ccceEEEeeEEeccCCeEEeeeeeeCCEEEEeeccCCccccCCCCCCeEECCCceEEecCCceEecCcceEEEchhhcCC
Confidence 46899999999998888999999999999999975321 235789999999999997 99999987
Q ss_pred cC
Q 014320 116 ME 117 (427)
Q Consensus 116 ~~ 117 (427)
.|
T Consensus 145 kP 146 (180)
T d1e9yb1 145 KP 146 (180)
T ss_dssp CC
T ss_pred CH
Confidence 76
|
| >d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Hypothetical protein TM0667 species: Thermotoga maritima [TaxId: 2336]
Probab=98.45 E-value=1.9e-06 Score=76.25 Aligned_cols=239 Identities=15% Similarity=0.100 Sum_probs=128.0
Q ss_pred ccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHh---ccccceeceecccc-CCCh
Q 014320 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKA---KNSCMDYGFHMAIT-KWDE 182 (427)
Q Consensus 107 ~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~ 182 (427)
+||+|+|+.... ..++.......+...||+.++..+.. .+..+...+.. ++.+..+|+|.... ....
T Consensus 5 lIDsH~HLd~~~----~~~d~~~vi~~a~~~gV~~ii~~~~~-----~~~~~~~~~la~~~~~i~~a~GiHP~~~~~~~~ 75 (260)
T d1j6oa_ 5 MVDTHAHLHFHQ----FDDDRNAVISSFEENNIEFVVNVGVN-----LEDSKKSLDLSKTSDRIFCSVGVHPHDAKEVPE 75 (260)
T ss_dssp EEEEEECTTSGG----GTTTHHHHHHTTTTTTEEEEEEECSS-----HHHHHHHHHHHTTCTTEEEEECCCGGGGGGCCT
T ss_pred cEEeccCCCChh----hCcCHHHHHHHHHHCCCCEEEEecCC-----HHHHHHHHHHHHhccccccccccChhhcccccc
Confidence 799999986541 12334444566788999988854321 11222222222 33455667665432 2234
Q ss_pred hhHHHHHHHHHHcCCCeEE-EEEecCCCcc---CCHHHHHHHHHHHHHcCCcEEEecCChhhHHHHHHHHHHcCCCCccc
Q 014320 183 VVSDEMEVMVKEKGINSFK-FFMAYKGSFM---INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEG 258 (427)
Q Consensus 183 ~~~~~~~~l~~~~g~~~ik-~~~~~~~~~~---~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~ 258 (427)
+..+.++.+.+...+..|. +.+++..... .-.+.+++.++.|+++++|+.+|+-+.. ....+.+.+.+..
T Consensus 76 ~~~~~l~~~~~~~~vvaIGEiGLD~~~~~~~~~~Q~~vF~~ql~lA~~~~lPviiH~r~a~--~~~~~il~~~~~~---- 149 (260)
T d1j6oa_ 76 DFIEHLEKFAKDEKVVAIGETGLDFFRNISPAEVQKRVFVEQIELAGKLNLPLVVHIRDAY--SEAYEILRTESLP---- 149 (260)
T ss_dssp THHHHHHHHTTSTTEEEEEEEEEETTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCH--HHHHHHHHHSCCC----
T ss_pred hhhhhhHHHHhhCCeeeEeeccccccccccHHHHHHHHHHHHHHHHHhcCcceEEeeccch--HHHHHHHHhhcCC----
Confidence 4566666666333444443 4556532211 1235688899999999999999984321 1111222222211
Q ss_pred ccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeE
Q 014320 259 HALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYV 338 (427)
Q Consensus 259 ~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~ 338 (427)
..+ .+.|+.+.. .+.++++.+.|..+.....+. +
T Consensus 150 ------------------------~~~-~i~H~fsG~-~~~~~~~l~~g~~is~~g~~~--~------------------ 183 (260)
T d1j6oa_ 150 ------------------------EKR-GVIHAFSSD-YEWAKKFIDLGFLLGIGGPVT--Y------------------ 183 (260)
T ss_dssp ------------------------SSC-EEETTCCSC-HHHHHHHHHHTEEEEECGGGG--C------------------
T ss_pred ------------------------CCC-eeeeccccC-HHHHHHHHhCCCceeeccccc--c------------------
Confidence 122 377887765 477788777775444311110 0
Q ss_pred EcCCCCCcccHHHHHHHHhc--CCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHH
Q 014320 339 MSPPIRASGHNKALQAALAT--GILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYV 416 (427)
Q Consensus 339 ~~pplr~~~~~~~l~~~l~~--G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v 416 (427)
.+. ..+++.++. -....+-||. |+....... |-.+.-..++.+.....+-.+++.+++.
T Consensus 184 ----~~~----~~~~~~v~~iPldrlllETD~-P~l~p~~~~----------~~~n~P~~l~~v~~~iA~~~~~~~~ev~ 244 (260)
T d1j6oa_ 184 ----PKN----EALREVVKRVGLEYIVLETDC-PFLPPQPFR----------GKRNEPKYLKYVVETISQVLGVPEAKVD 244 (260)
T ss_dssp ----TTC----HHHHHHHHHHCGGGEEECCCB-TSCCCGGGT----------TSCCCGGGHHHHHHHHHHHHTSCHHHHH
T ss_pred ----chH----HHHHHHHHhcccceEEEecCC-CCCCCcccC----------CCCCChHHHHHHHHHHHHHhCcCHHHHH
Confidence 011 123333321 2357889994 775433221 1111222345555444455679999999
Q ss_pred HHHchhhhc
Q 014320 417 RLTSTEWGR 425 (427)
Q Consensus 417 ~~~t~npA~ 425 (427)
+.++.|.-|
T Consensus 245 ~~~~~N~~r 253 (260)
T d1j6oa_ 245 EATTENARR 253 (260)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999865
|
| >d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Deoxyribonuclease TatD (MttC) species: Escherichia coli [TaxId: 562]
Probab=98.42 E-value=8.6e-06 Score=71.87 Aligned_cols=246 Identities=10% Similarity=0.060 Sum_probs=131.9
Q ss_pred ccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceeccccC-CChhhH
Q 014320 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITK-WDEVVS 185 (427)
Q Consensus 107 ~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 185 (427)
+||+|+|+....+ .++...-...+...||+.++..+... ........+.+..+..+..+|+|..... ..+...
T Consensus 1 liD~H~HL~~~~f----~~d~~~vl~~a~~~gV~~ii~~~~~~--~~~~~~~~la~~~~~v~~a~GiHP~~~~~~~~~~~ 74 (260)
T d1xwya1 1 MFDIGVNLTSSQF----AKDRDDVVACAFDAGVNGLLITGTNL--RESQQAQKLARQYSSCWSTAGVHPHDSSQWQAATE 74 (260)
T ss_dssp CEEEEECTTSGGG----TTTHHHHHHHHHHTTCCEEEECCCSH--HHHHHHHHHHHHSTTEEEEECCCGGGGGGCCHHHH
T ss_pred CEEEEeCCCChHH----hCCHHHHHHHHHHCCCCEEEEecCCH--HHHHHHHHHHHhCCcccchhhcCcchhhhhhhhHH
Confidence 6899999975421 23444446778899999998653211 1222222333333445566777654332 233344
Q ss_pred HHHHHHHHHcCCCeEE-EEEecCCCccC---CHHHHHHHHHHHHHcCCcEEEecCCh-hhHHHHHHHHHHcCCCCccccc
Q 014320 186 DEMEVMVKEKGINSFK-FFMAYKGSFMI---NDELLIEGFKRCKSLGALAMVHAENG-DAVFEGQKRMIELGITGPEGHA 260 (427)
Q Consensus 186 ~~~~~l~~~~g~~~ik-~~~~~~~~~~~---~~~~l~~~~~~a~~~g~~v~~H~e~~-~~~~~~~~~l~~~G~~~~~~~~ 260 (427)
+.+.++.....+..|. +.+++...... ..+.+.+.++.|+++++||.+|+-+. +.+ .+.+.
T Consensus 75 ~~~~~~~~~~~~vaIGEiGLD~~~~~~~~~~q~~~f~~ql~lA~~~~lPviiH~r~a~~~~---~~il~----------- 140 (260)
T d1xwya1 75 EAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLRIAADLNMPVFMHCRDAHERF---MTLLE----------- 140 (260)
T ss_dssp HHHHHHHTSTTEEEEEEEEEETTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCHHHH---HHHHG-----------
T ss_pred HHHHHHHhcchhhhhhhhcccccccccchHHHHHHHHHHHHHHHhcCCceEeeeccchhHH---HHHHH-----------
Confidence 4555555333444444 34554322211 13467788999999999999998432 221 11111
Q ss_pred ccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEc
Q 014320 261 LSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMS 340 (427)
Q Consensus 261 ~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~ 340 (427)
.......+ .+.|+.+.. .+.++++.+.|..+....... +
T Consensus 141 -----------------~~~~~~~~-~v~H~f~g~-~~~~~~~~~~g~~~s~~g~~~--~-------------------- 179 (260)
T d1xwya1 141 -----------------PWLDKLPG-AVLHCFTGT-REEMQACVAHGIYIGITGWVC--D-------------------- 179 (260)
T ss_dssp -----------------GGGGGSSC-EEECSCCCC-HHHHHHHHHTTCEEEECGGGG--C--------------------
T ss_pred -----------------HhhccCcc-cchhhhhcc-HHHHHHhhhhccccccCcccc--c--------------------
Confidence 10111122 367886665 377888888886555422111 0
Q ss_pred CCCCCcccHHHHHHHHhcC--CceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHHH
Q 014320 341 PPIRASGHNKALQAALATG--ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRL 418 (427)
Q Consensus 341 pplr~~~~~~~l~~~l~~G--~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~~ 418 (427)
.. ....+++.++.= ....+=||. |+..... +..-+.|-.+.-..++.....+.+-.+++.+++.+.
T Consensus 180 -~~----~~~~~~~~~~~iPldrlllETD~-P~~~p~~------~~~~~~~~~NeP~~l~~v~~~lA~~~g~~~~ev~~~ 247 (260)
T d1xwya1 180 -ER----RGLELRELLPLIPAEKLLIETDA-PYLLPRD------LTPKPSSRRNEPAHLPHILQRIAHWRGEDAAWLAAT 247 (260)
T ss_dssp -TT----TSHHHHHHGGGSCGGGEEECCCT-TSCCCTT------CTTCCCSSCCCGGGHHHHHHHHHHHHTCCHHHHHHH
T ss_pred -hh----hHHHHHHHHHhhhhhheeeecCC-CCCCCcc------ccccccCCCCChHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 00 012244444321 257889995 7653221 111122322333445555544445567999999999
Q ss_pred Hchhhhc
Q 014320 419 TSTEWGR 425 (427)
Q Consensus 419 ~t~npA~ 425 (427)
++.|.-|
T Consensus 248 ~~~N~~~ 254 (260)
T d1xwya1 248 TDANVKT 254 (260)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999765
|
| >d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Putative deoxyribonuclease YcfH species: Escherichia coli [TaxId: 562]
Probab=98.38 E-value=5.2e-06 Score=73.60 Aligned_cols=241 Identities=17% Similarity=0.180 Sum_probs=126.8
Q ss_pred ccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHh---ccccceeceeccccCCChh
Q 014320 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKA---KNSCMDYGFHMAITKWDEV 183 (427)
Q Consensus 107 ~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 183 (427)
|||+|+|+...... ...++...-...+...||+.++..+. .. ...+...+.. +.....+|+|..... ...
T Consensus 3 lIDtH~Hld~~~~e-~~~~d~~~vi~~a~~~gv~~ii~~~~----~~-~~~~~~~~l~~~~~~i~~~~GiHP~~~~-~~~ 75 (265)
T d1yixa1 3 LVDSHCHLDGLDYE-SLHKDVDDVLAKAAARDVKFCLAVAT----TL-PSYLHMRDLVGERDNVVFSCGVHPLNQN-DPY 75 (265)
T ss_dssp EEEEEECGGGSCTT-TTCSSHHHHHHHHHHTTEEEEEECCS----SH-HHHHHHHHHHCSCTTEEEEECCCTTCCS-SCC
T ss_pred EEEecccCCccccc-hhhcCHHHHHHHHHHcCCCEEEEeeC----CH-HHHHHHHHHHHhcccccccccccccccc-ccc
Confidence 79999999753111 11223444466778899998875432 12 2222222322 223344455542222 222
Q ss_pred hHHHHHHHHHHcCCCeEE-EEEecCCCccC---CHHHHHHHHHHHHHcCCcEEEecCC-hhhHHHHHHHHHHcCCCCccc
Q 014320 184 VSDEMEVMVKEKGINSFK-FFMAYKGSFMI---NDELLIEGFKRCKSLGALAMVHAEN-GDAVFEGQKRMIELGITGPEG 258 (427)
Q Consensus 184 ~~~~~~~l~~~~g~~~ik-~~~~~~~~~~~---~~~~l~~~~~~a~~~g~~v~~H~e~-~~~~~~~~~~l~~~G~~~~~~ 258 (427)
.++.+.++....++.++. +.+++...... ..+.+.+.++.|.++++|+.+|+-+ .+.+..
T Consensus 76 ~~e~l~~~~~~~~vvaIGEiGLD~~~~~~~~~~q~~~f~~ql~lA~~~~lPv~iH~r~a~~~~~~--------------- 140 (265)
T d1yixa1 76 DVEDLRRLAAEEGVVALGETGLDYYYTPETKVRQQESFIHHIQIGRELNKPVIVHTRDARADTLA--------------- 140 (265)
T ss_dssp CHHHHHHHHTSTTEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCHHHHHH---------------
T ss_pred chHHHHHHhccCCceeeecccccccccccchHHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHH---------------
Confidence 356677766444454443 44555322211 1345788899999999999999844 222211
Q ss_pred ccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeE
Q 014320 259 HALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYV 338 (427)
Q Consensus 259 ~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~ 338 (427)
.+........+ .+.|+.+.. .+.++++.+.|..+....... .
T Consensus 141 ----------------il~~~~~~~~~-~v~H~FsG~-~~~a~~~l~~g~~~s~~g~~~---------~----------- 182 (265)
T d1yixa1 141 ----------------ILREEKVTDCG-GVLHCFTED-RETAGKLLDLGFYISFSGIVT---------F----------- 182 (265)
T ss_dssp ----------------HHHHTTGGGTC-EEETTCCSC-HHHHHHHHTTTCEEEECGGGG---------S-----------
T ss_pred ----------------HHHhhcccCcc-eEEEeecCC-hHHHHHHHHcCCeecCccccc---------c-----------
Confidence 11111111233 377987655 477888888886554421110 0
Q ss_pred EcCCCCCcccHHHHHHHHhc--CCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHH
Q 014320 339 MSPPIRASGHNKALQAALAT--GILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYV 416 (427)
Q Consensus 339 ~~pplr~~~~~~~l~~~l~~--G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v 416 (427)
. ....+++.++. =....+-||. |+....+.. |-.+.-..++.....+.+-.+++.+++.
T Consensus 183 ------~--~~~~l~~~v~~iPldrlLlETD~-P~~~p~~~~----------~~~n~P~~i~~~~~~iA~i~~~~~~ev~ 243 (265)
T d1yixa1 183 ------R--NAEQLRDAARYVPLDRLLVETDS-PYLAPVPHR----------GKENQPAMVRDVAEYMAVLKGVAVEELA 243 (265)
T ss_dssp ------T--TCHHHHHHHHHSCGGGEEECCCB-TSCCCTTCT----------TSCCCGGGHHHHHHHHHHHHTSCHHHHH
T ss_pred ------c--hhHHHHHHHHhcchhceEeecCC-cccCccccC----------CCCCCcHHHHHHHHHHHHHHCcCHHHHH
Confidence 0 01123333322 1258889994 765432211 1112223345444444444579999999
Q ss_pred HHHchhhhcC
Q 014320 417 RLTSTEWGRL 426 (427)
Q Consensus 417 ~~~t~npA~~ 426 (427)
+.++.|.-++
T Consensus 244 ~~~~~Na~~l 253 (265)
T d1yixa1 244 QVTTDNFARL 253 (265)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998653
|
| >d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Putative deoxyribonuclease YjjV species: Escherichia coli [TaxId: 562]
Probab=98.35 E-value=2.9e-05 Score=68.34 Aligned_cols=242 Identities=16% Similarity=0.085 Sum_probs=124.3
Q ss_pred ccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCCcHHHHHHHHHHHhccccceeceeccccC-CChhhH
Q 014320 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITK-WDEVVS 185 (427)
Q Consensus 107 ~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 185 (427)
|||+|+|+... ...++.......+...||+.++..+... ...+...++.+..+.....+|+|..... ..+...
T Consensus 5 ~ID~H~HLd~~----~~~~d~~~~l~~a~~~gV~~~v~~~t~~--~~~~~~~~l~~~~~~i~~~~GiHP~~~~~~~~~~~ 78 (259)
T d1zzma1 5 FIDTHCHFDFP----PFSGDEEASLQRAAQAGVGKIIVPATEA--ENFARVLALAENYQPLYAALGLHPGMLEKHSDVSL 78 (259)
T ss_dssp EEESCBCTTST----TTTTCHHHHHHHHHHTTEEEEEEECCSG--GGHHHHHHHHHHCTTEEEEECCCGGGGGGCCHHHH
T ss_pred EEEeCcCCCCh----hhCcCHHHHHHHHHHcCCCEEEEecCCH--HHHHHHHHHHhcCccccccccCCchHhhccchhhH
Confidence 79999998643 1223344446677889999887543221 1222233333333444555666654322 233334
Q ss_pred HHHHHHHHHcC--CCeE-EEEEecCCCc--c-CCHHHHHHHHHHHHHcCCcEEEecCCh-hhHHHHHHHHHHcCCCCccc
Q 014320 186 DEMEVMVKEKG--INSF-KFFMAYKGSF--M-INDELLIEGFKRCKSLGALAMVHAENG-DAVFEGQKRMIELGITGPEG 258 (427)
Q Consensus 186 ~~~~~l~~~~g--~~~i-k~~~~~~~~~--~-~~~~~l~~~~~~a~~~g~~v~~H~e~~-~~~~~~~~~l~~~G~~~~~~ 258 (427)
+....+..... +.++ .+.+++.... . .-.+.+.+.++.|+++++|+.+|+-.. +.+
T Consensus 79 ~~~~~~~~~~~~~~v~iGEiGld~~~~~~~~~~q~~~f~~ql~lA~~~~~Pv~IH~r~a~~~~----------------- 141 (259)
T d1zzma1 79 EQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTHDKL----------------- 141 (259)
T ss_dssp HHHHHHHHHCCSSEEEEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHHH-----------------
T ss_pred HHHHHHHhccCcccceeccccccccccchhhhHHHHHHHHHHHHHHHhccchhhhhHHHHHHH-----------------
Confidence 44444442222 2222 2333432111 1 113567889999999999999997432 211
Q ss_pred ccccCCHHHHHHHHHHHHHHHHhcC-CCEEEEcCCCHHHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCcee
Q 014320 259 HALSRPPLLEGEATTRAIRLAEFVN-TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKY 337 (427)
Q Consensus 259 ~~~~~p~~~e~~a~~~~~~~~~~~g-~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~ 337 (427)
+++....+ .+..+.|..+.. .+.++++.+.|..+.. ++...+.
T Consensus 142 -----------------~~~l~~~~~~~~~i~H~f~g~-~~~~~~~l~~g~~~si--~~~~~~~---------------- 185 (259)
T d1zzma1 142 -----------------AMHLKRHDLPRTGVVHGFSGS-LQQAERFVQLGYKIGV--GGTITYP---------------- 185 (259)
T ss_dssp -----------------HHHHHHHCCTTCEEETTCCSC-HHHHHHHHHTTCEEEE--CGGGGCT----------------
T ss_pred -----------------HHhhhccccccceeeecccCC-HHHHHHHHHcCCCccc--ccccccc----------------
Confidence 11111221 233478886665 3777888888854443 2210000
Q ss_pred EEcCCCCCcccHHHHHHHHhcCCceEEecCCCCCChhhhhcCCCCCccCCCCCchhhHhHHHHHHHHHhcCCCCHHHHHH
Q 014320 338 VMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVR 417 (427)
Q Consensus 338 ~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~~p~~~~~~~~~~~~~~~~~~G~~~~e~~l~~~~~~~~~~~~l~l~~~v~ 417 (427)
+.+..++.++ .+- =..+.+-|| +|+....+.. |-.+....++.+...+.+-.+++.+++.+
T Consensus 186 ------~~~~~~~~v~-~iP-ldriL~ETD-~P~~~~~~~~----------~~~~~P~~~~~~~~~iA~i~~~~~~ev~~ 246 (259)
T d1zzma1 186 ------RASKTRDVIA-KLP-LASLLLETD-APDMPLNGFQ----------GQPNRPEQAARVFAVLCELRREPADEIAQ 246 (259)
T ss_dssp ------TTCSHHHHHH-HSC-GGGEEECCC-BTSSCCTTCT----------TSCCCGGGHHHHHHHHHHHCSSCHHHHHH
T ss_pred ------chHHHHHHHH-hhc-cceEEEecC-CCCcCCCcCC----------CCCCchHHHHHHHHHHHHHhCCCHHHHHH
Confidence 1111122222 111 125788999 4764322211 11111223444444444557899999999
Q ss_pred HHchhhhcC
Q 014320 418 LTSTEWGRL 426 (427)
Q Consensus 418 ~~t~npA~~ 426 (427)
.++.|.-|+
T Consensus 247 ~~~~N~~rl 255 (259)
T d1zzma1 247 ALLNNTYTL 255 (259)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999997653
|
| >d4ubpc2 c.1.9.2 (C:132-434,C:484-570) alpha-subunit of urease, catalytic domain {Bacillus pasteurii [TaxId: 1474]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Bacillus pasteurii [TaxId: 1474]
Probab=98.33 E-value=1.2e-06 Score=77.72 Aligned_cols=114 Identities=16% Similarity=0.133 Sum_probs=86.0
Q ss_pred cccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCC--------cHHHHHHHHHHHhccccceeceeccc
Q 014320 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING--------SLTAGFEAYEKKAKNSCMDYGFHMAI 177 (427)
Q Consensus 106 G~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (427)
|-||.|+|+-.+ +. ...+|.+||||++--+..+.. ...-.++.+.+.....++++++.+.-
T Consensus 1 GgiDtHvHfi~P-------qq----~~~al~sGiTT~~GgGtGpa~gt~att~tpG~~~i~~ml~a~d~~P~N~g~~gkG 69 (390)
T d4ubpc2 1 GGIDTHVHFINP-------DQ----VDVALANGITTLFGGGTGPAEGSKATTVTPGPWNIEKMLKSTEGLPINVGILGKG 69 (390)
T ss_dssp CEEEEEEECCCT-------TH----HHHHHHTTEEEEEEECCSSCHHHHHSSCCCHHHHHHHHHHHHTTCSSEEEEEEEC
T ss_pred CCccccccccCH-------HH----HHHHHhcCCeeeecCccCCCCCCCCcccCCCHHHHHHHHHhhhhCCcceeeeecc
Confidence 679999999776 11 567899999999864322111 23445777777778899999987643
Q ss_pred cCCChhhHHHHHHHHHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCCh
Q 014320 178 TKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG 238 (427)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~ 238 (427)
... ..+.+.+.+ ..|+.++|+.-+|. .++..+..++..|.+++++|.+|..+.
T Consensus 70 n~s---~~~~l~eqi-~aGa~GlKiHEDwG----atpa~id~~L~vad~~dvqv~iHtDtl 122 (390)
T d4ubpc2 70 HGS---SIAPIMEQI-DAGAAGLKIHEDWG----ATPASIDRSLTVADEADVQVAIHSDTL 122 (390)
T ss_dssp CCS---SHHHHHHHH-HHTCCEEEEEGGGC----CCHHHHHHHHHHHHHHTCEEEEECCTT
T ss_pred ccC---ChHHHHHHH-Hhhhheeecccccc----cCHHHHHHHHHHhhccCceEEEecCCc
Confidence 222 234577777 78999999988775 688999999999999999999997544
|
| >d1ejxc2 c.1.9.2 (C:1130-1422,C:1476-1567) alpha-subunit of urease, catalytic domain {Klebsiella aerogenes [TaxId: 28451]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Klebsiella aerogenes [TaxId: 28451]
Probab=98.19 E-value=3.5e-06 Score=74.75 Aligned_cols=113 Identities=13% Similarity=0.099 Sum_probs=84.6
Q ss_pred cccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCC--------cHHHHHHHHHHHhccccceeceeccccC
Q 014320 108 IDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING--------SLTAGFEAYEKKAKNSCMDYGFHMAITK 179 (427)
Q Consensus 108 ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (427)
||+|+|+-.| + ....+|.+||||++--+..+.. ...-.++.+.++....++++++.+.-..
T Consensus 2 iDtHvHfi~P-------q----q~~~al~sGiTT~iGgGtGPa~Gt~att~tpg~~~~~~ml~a~d~~P~N~g~~gkGn~ 70 (385)
T d1ejxc2 2 IDTHIHWICP-------Q----QAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRMLQAADSLPVNIGLLGKGNV 70 (385)
T ss_dssp EEEEEECSCT-------T----HHHHHHHTTEEEEEEECCSSSHHHHHSSCCCHHHHHHHHHHHHTTSSSEEEEEEECCC
T ss_pred ccccccccCH-------H----HHHHHHhcCCeeeecCccCCCCCCCCcCcCCCHHHHHHHHHhhhhCCcceeeeecccc
Confidence 8999999776 1 1567899999999964322111 2344567777777888999998764332
Q ss_pred CChhhHHHHHHHHHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCChh
Q 014320 180 WDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGD 239 (427)
Q Consensus 180 ~~~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~ 239 (427)
.. .+.+++.+ ..|+.++|+.-+|. .++..+...+..|.+++++|.+|..+-.
T Consensus 71 s~---~~~l~eqi-~AGa~GlKiHEDwG----atpa~id~~L~vad~~dvqv~iHtDtlN 122 (385)
T d1ejxc2 71 SQ---PDALREQV-AAGVIGLKIHEDWG----ATPAAIDCALTVADEMDIQVALHSDTLN 122 (385)
T ss_dssp SS---HHHHHHHH-HHTCSEEEEEGGGC----CCHHHHHHHHHHHHHHTCEEEEECCTTC
T ss_pred CC---hHHHHHHH-HhhhceecCCcccc----cChHHHHHHHHhHhhcCceEEEeccccc
Confidence 22 34567777 78999999988775 5889999999999999999999976543
|
| >d2puza1 b.92.1.10 (A:17-79,A:381-420) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.15 E-value=2.9e-06 Score=63.32 Aligned_cols=63 Identities=11% Similarity=0.159 Sum_probs=52.0
Q ss_pred cEEEECcEEEcCCC-------ceeeeEEEeCCeEEEeeCCCCCC----CCceEEeCCCCEEecccccccccccc
Q 014320 54 KILIKGGTVVNAHH-------QQIADVYVEDGIVVAVQPNINVG----DDVKVLDATGKFVMPGGIDPHTHLAM 116 (427)
Q Consensus 54 ~~~i~~~~i~~~~~-------~~~~~i~i~~g~I~~vg~~~~~~----~~~~viD~~g~~v~PG~ID~H~H~~~ 116 (427)
+.+++|++|.+.++ ++++.|+|+||||.+||+..+.+ ...+++|++|+++.+..-..+-++-.
T Consensus 2 ~~l~~n~~iaTm~~~~~~~g~ie~aAl~v~~g~I~~vG~~~~l~~~~~~aa~viDl~Grlv~i~~Gk~AD~~i~ 75 (103)
T d2puza1 2 TALWRNAQLATLNPAMDGIGAVENAVIAVRNGRIAFAGPESDLPDDLSTADETTDCGGRWITLEAGKSADFAIW 75 (103)
T ss_dssp EEEEEEEEEECCCTTSSTTCEEEEEEEEEETTEEEEEEETTSCCGGGSCCSEEEECTTCEEECCTTSBCCEEEE
T ss_pred cEEEEcCEEEEcCCCCCcchHHHHHHHHhhCCCccccChhhhcchhhhchHhhcCCCCCEEEeeccceeeEEEE
Confidence 57999999998653 36889999999999999987654 25689999999999888777777644
|
| >d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease, catalytic domain {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Helicobacter pylori [TaxId: 210]
Probab=98.14 E-value=4.3e-06 Score=74.10 Aligned_cols=112 Identities=16% Similarity=0.181 Sum_probs=83.6
Q ss_pred cccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCCCC--------cHHHHHHHHHHHhccccceeceeccccC
Q 014320 108 IDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING--------SLTAGFEAYEKKAKNSCMDYGFHMAITK 179 (427)
Q Consensus 108 ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (427)
||+|+|+-.+ + ....+|.+||||++--+..+.. ...-.++.+.++....++++++.+.-..
T Consensus 2 iDtHvHfi~P-------q----q~~~al~sGiTT~iGgGtGPa~Gt~att~tpg~~~i~~ml~a~d~~P~N~g~~gkGn~ 70 (389)
T d1e9yb2 2 IDTHIHFISP-------Q----QIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEYSMNLGFLAKGNA 70 (389)
T ss_dssp EEEEEETTCT-------T----HHHHHHHTTEEEEEEECCSSCHHHHHCCCCCHHHHHHHHHHHHTTSSSEEEEEEECCC
T ss_pred ccccccccCH-------H----HHHHHHhcCCeEEecCccCCCCCCCccccCCChhHHHHHHHhhhcCCcceeeeeccCC
Confidence 8999998776 1 1567899999999864322110 2344567777777788999998764332
Q ss_pred CChhhHHHHHHHHHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCCh
Q 014320 180 WDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG 238 (427)
Q Consensus 180 ~~~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~ 238 (427)
.. ...+.+.+ +.|+.++|+.-+|. .++..+...+..|.+++++|.+|..+-
T Consensus 71 s~---~~~l~eqi-~aGa~GlKiHEDwG----atp~~Id~~L~vad~~dvqv~iHtDtl 121 (389)
T d1e9yb2 71 SN---DASLADQI-EAGAIGFKIHEDWG----TTPSAINHALDVADKYDVQVAIHTDTL 121 (389)
T ss_dssp SC---HHHHHHHH-HTTCSEEEECGGGC----CCHHHHHHHHHHHHHTTCEEEECCCTT
T ss_pred CC---hHHHHHHH-Hhccceeecccccc----CCHHHHHHHHHHHHhhCceEEecCCCc
Confidence 22 34567777 79999999987765 688999999999999999999997543
|
| >d1o12a2 c.1.9.10 (A:44-331) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain domain: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.61 E-value=1.2e-05 Score=71.06 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=34.2
Q ss_pred cccccccccccCcCCCCChhhHHHHHHHHHcCCceEEecCcCCC
Q 014320 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPI 149 (427)
Q Consensus 106 G~ID~H~H~~~~~~g~~~~e~~~~~~~~~l~~GvTtv~d~~~~~ 149 (427)
||||+|+|+..+ +....++....++.++++||||++++..+.
T Consensus 1 GlID~HvH~~~~--~~~~~~~~~~~~~~~l~~GvTTv~~~~~t~ 42 (288)
T d1o12a2 1 GFVDPHIHGVVG--ADTMNCDFSEMEEFLYSQGVTTFLATTVST 42 (288)
T ss_dssp CEEEEEECEETT--EETTTTCHHHHHHHHHTTTEEEEEEECCSC
T ss_pred CeEEecccCCCC--CccccccHHHHHHHHHhCCeEEEcCCCCCC
Confidence 899999998876 445567777778999999999999876543
|
| >d1o12a1 b.92.1.5 (A:1-43,A:332-364) N-acetylglucosamine-6-phosphate deacetylase, NagA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA domain: N-acetylglucosamine-6-phosphate deacetylase, NagA species: Thermotoga maritima [TaxId: 2336]
Probab=97.21 E-value=0.00048 Score=44.85 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=39.4
Q ss_pred EEECcEEEcCCC-ceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEecccccccccc
Q 014320 56 LIKGGTVVNAHH-QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114 (427)
Q Consensus 56 ~i~~~~i~~~~~-~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~ 114 (427)
++.+.-|+|+-. ...++|-+++|+|..|-.....+. .++||||+|.|.|-
T Consensus 2 ~iE~VLIVDPidGEyTGdvEf~e~kI~~I~k~ectp~---------~ilMP~f~dg~~a~ 52 (76)
T d1o12a1 2 IVEKVLIVDPIDGEFTGDVEIEEGKIVKVEKRECIPR---------GVLMPRIAEGTRAD 52 (76)
T ss_dssp EEEEEEEEETTTEEEEEEEEEETTEEEEEEECCSCCS---------SEEEECCSTTSBCC
T ss_pred ceeeEEEEcCCCCcEeeeEEecCcEEEEEEEeccCCC---------eEEcccccCCcccc
Confidence 567778888754 568999999999999976533221 58999999999984
|
| >d2q09a1 b.92.1.10 (A:4-65,A:367-407) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Probable 4-imidazolone-5-propanoate amidohydrolase GOS 1928421 species: Environmental samples
Probab=97.18 E-value=0.00022 Score=51.86 Aligned_cols=54 Identities=19% Similarity=0.140 Sum_probs=42.6
Q ss_pred cEEEECcEEEcCCC-------ceeeeEEEeCCeEEEeeCCCCCC--CCceEEeCCCCEEe--ccc
Q 014320 54 KILIKGGTVVNAHH-------QQIADVYVEDGIVVAVQPNINVG--DDVKVLDATGKFVM--PGG 107 (427)
Q Consensus 54 ~~~i~~~~i~~~~~-------~~~~~i~i~~g~I~~vg~~~~~~--~~~~viD~~g~~v~--PG~ 107 (427)
|.+++|+++-|.+. ++++.|+|++|||.+||+..+.| ....+.|++|+++. +|.
T Consensus 3 d~lw~n~~lATm~~~~~~yG~ie~~ai~v~~g~I~~vgp~~~lpa~~~~~~~d~~gr~~tlevGk 67 (103)
T d2q09a1 3 ERVWLNVTPATLRSDLADYGLLEPHALGVHEGRIHALVPMQDLKGPYPAHWQDMKGKLVTLRVGM 67 (103)
T ss_dssp SEEEEEEEEBCCCTTSSTTCBCSSEEEEEETTEEEEEEEGGGCC--CCTTSEECTTCEEECCTTS
T ss_pred ceeeecCEEEEecCCCCCcceeccceEEEeCCeEEEEEehhhCCccccchhhhcccceEEecCCC
Confidence 57899999988653 46899999999999999987665 23467899999754 554
|
| >d1a4ma_ c.1.9.1 (A:) Adenosine deaminase (ADA) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Adenosine/AMP deaminase domain: Adenosine deaminase (ADA) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.82 E-value=0.0063 Score=55.30 Aligned_cols=100 Identities=19% Similarity=0.150 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHcCCcEEEec-CChhhHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCCC
Q 014320 215 ELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS 293 (427)
Q Consensus 215 ~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~~ 293 (427)
..+.++++.|++.|+++.+|+ |... .. .+..++. ..++ -.|.|...
T Consensus 192 ~~~~~~f~~ar~~gl~~t~HaGE~~~-~~----------------------------~i~~ai~---~l~~-~RIGHG~~ 238 (349)
T d1a4ma_ 192 PGHVEAYEGAVKNGIHRTVHAGEVGS-PE----------------------------VVREAVD---ILKT-ERVGHGYH 238 (349)
T ss_dssp HHHHHHHHHHHHHTCEEEEEESSSSC-HH----------------------------HHHHHHH---TSCC-SEEEECGG
T ss_pred HHHHHHHHHHHHcCCceeeccCCCCC-hH----------------------------HHHHHHH---HhCC-cccCCcee
Confidence 457788999999999999998 5431 11 1122222 1232 25888864
Q ss_pred H-HHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCC
Q 014320 294 M-DAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDH 368 (427)
Q Consensus 294 ~-~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~ 368 (427)
. +.-++++.++++++.+ ++||......... +.++. -.+...++.|++++|+||.
T Consensus 239 l~~d~~l~~~~~~~~I~l--EvCptSN~~~~~~---------------~~~~~----HP~~~~~~~gv~v~i~TDD 293 (349)
T d1a4ma_ 239 TIEDEALYNRLLKENMHF--EVCPWSSYLTGAW---------------DPKTT----HAVVRFKNDKANYSLNTDD 293 (349)
T ss_dssp GGGSHHHHHHHHHTTCEE--EECHHHHHHSSSS---------------CTTSC----CHHHHHHHTTCCEEECCBC
T ss_pred cccCHHHHHHhhhcCceE--EEccccccccccc---------------Cchhh----HHHHHHHHCCCeEEEeCCC
Confidence 3 2236788888888655 5588654332111 11111 1266799999999999996
|
| >d2amxa1 c.1.9.1 (A:20-376) Adenosine deaminase (ADA) {Plasmodium yoelii [TaxId: 5861]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Adenosine/AMP deaminase domain: Adenosine deaminase (ADA) species: Plasmodium yoelii [TaxId: 5861]
Probab=96.69 E-value=0.0031 Score=57.63 Aligned_cols=100 Identities=17% Similarity=0.198 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHcCCcEEEec-CChh--hHHHHHHHHHHcCCCCcccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEcCC
Q 014320 216 LLIEGFKRCKSLGALAMVHA-ENGD--AVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292 (427)
Q Consensus 216 ~l~~~~~~a~~~g~~v~~H~-e~~~--~~~~~~~~l~~~G~~~~~~~~~~~p~~~e~~a~~~~~~~~~~~g~~~~i~H~~ 292 (427)
.+..+++.|++.|+++.+|+ |... .. ..+..++ ...|+. .|.|..
T Consensus 202 ~~~~~f~~ar~~gl~it~HaGE~~~~~~~----------------------------~~i~~ai---~~l~~~-RIgHGv 249 (357)
T d2amxa1 202 DHKDVYHSVRDHGLHLTVHAGEDATLPNL----------------------------NTLYTAI---NILNVE-RIGHGI 249 (357)
T ss_dssp GGHHHHHHHHHTTCEEEEEESCCTTCSSS----------------------------HHHHHHH---HTSCCS-EEEECG
T ss_pred hhHHHHHHHHhcCCcccccccccCCCCCh----------------------------HHHHHHH---HccCCc-ccccch
Confidence 46788999999999999998 5321 11 1111111 122332 588886
Q ss_pred CH-HHHHHHHHHhhcCCCEEEecCccceeeCcccccCCCcccCceeEEcCCCCCcccHHHHHHHHhcCCceEEecCC
Q 014320 293 SM-DAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDH 368 (427)
Q Consensus 293 ~~-~~~~~i~~~~~~G~~v~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~G~~~~lgSD~ 368 (427)
.. ..-++++.++++++.+. +||......... ++++ ..| +..+++.|+.++|+||.
T Consensus 250 ~~~~d~~l~~~l~~~~I~le--iCPtSN~~~~~~---~~~~-------~HP---------~~~l~~~Gv~v~l~TDD 305 (357)
T d2amxa1 250 RVSESDELIELVKKKDILLE--VCPISNLLLNNV---KSMD-------THP---------IRKLYDAGVKVSVNSDD 305 (357)
T ss_dssp GGGGCHHHHHHHHHHTCEEE--ECHHHHHHTTSS---SCST-------TCT---------HHHHHHTTCEEEECCBC
T ss_pred heecCHHHHHHHHHhCceEE--ECCcchhhhccC---CCcc-------cCH---------HHHHHHCCCeEEEeCCC
Confidence 53 12256788888886554 588754332211 0110 123 56689999999999996
|
| >d2icsa1 b.92.1.8 (A:4-54,A:322-371) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Adenine deaminase domain: Putative adenine deaminase EF0837 species: Enterococcus faecalis [TaxId: 1351]
Probab=96.57 E-value=0.0014 Score=47.40 Aligned_cols=46 Identities=20% Similarity=0.283 Sum_probs=38.4
Q ss_pred ccEEEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCE
Q 014320 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKF 102 (427)
Q Consensus 53 ~~~~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~ 102 (427)
.|++|+|++.+++. .-+|.|.+|||++||+..+. ++.+++|+.|+.
T Consensus 2 ~d~~i~~~~~~~g~---~~diai~~~ki~a~~~~~~~-~a~~~~~L~~~~ 47 (101)
T d2icsa1 2 YDLLIKNGQTVNGM---PVEIAIKEKKIAAVAATISG-SAKETIHLEPGT 47 (101)
T ss_dssp EEEEEEEEECTTSC---EEEEEEETTEEEEEESCCCC-CEEEEEECCTTC
T ss_pred ccEEEEcceecCCC---eEEEEeccCeeeeecccccc-cchheEecCCce
Confidence 57899999999875 67899999999999986553 457899999853
|
| >d2ffia1 c.1.9.15 (A:10-280) Putative 2-pyrone-4,6-dicarboxylic acid hydrolase PP1699 {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: Putative 2-pyrone-4,6-dicarboxylic acid hydrolase PP1699 species: Pseudomonas putida [TaxId: 303]
Probab=95.95 E-value=0.029 Score=47.49 Aligned_cols=44 Identities=9% Similarity=0.047 Sum_probs=29.5
Q ss_pred HcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecCC
Q 014320 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN 237 (427)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~ 237 (427)
..+...++...........++..++.+.+.+.+++.++.+|...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (271)
T d2ffia1 94 RLGVRGVRLNLMGQDMPDLTGAQWRPLLERIGEQGWHVELHRQV 137 (271)
T ss_dssp TTTCCEEECCCSSSCCCCTTSTTTHHHHHHHHHHTCEEEECSCT
T ss_pred HhhhccceeccccccCCCcccHhHHHHHHHHHHhCCCcccccCc
Confidence 44555555433333333456667888899999999999999754
|
| >d1ra0a1 b.92.1.2 (A:4-55,A:376-426) Cytosine deaminase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Cytosine deaminase domain: Cytosine deaminase species: Escherichia coli [TaxId: 562]
Probab=95.66 E-value=0.0054 Score=44.23 Aligned_cols=50 Identities=20% Similarity=0.230 Sum_probs=38.3
Q ss_pred EEECcEEEcCCCceeeeEEEeCCeEEEeeCCCCC-CCCceEEeCCCCEEeccc
Q 014320 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV-GDDVKVLDATGKFVMPGG 107 (427)
Q Consensus 56 ~i~~~~i~~~~~~~~~~i~i~~g~I~~vg~~~~~-~~~~~viD~~g~~v~PG~ 107 (427)
.|+|+++-..+ .-..|.|+||+|.+|.+..+. +.....+|++|.+++|=+
T Consensus 4 ~I~NarL~gr~--GL~~I~I~~G~i~~I~pq~~~~~~~~d~lDa~GgL~~p~~ 54 (103)
T d1ra0a1 4 TIINARLPGEE--GLWQIHLQDGKISAIDAQSGVMPITENSLDAEQGLVIPLI 54 (103)
T ss_dssp EEEEEBCTTCC--SEEEEEEETTEEEEEEEESSCCCCCTTEEECTTCEEESEE
T ss_pred eEEEEEeCCCC--cEEEEEecCCEEeeeecCCccccCCCcceeccCCcccCcE
Confidence 68888886554 346899999999999975443 345578999999999933
|
| >d2f6ka1 c.1.9.15 (A:2-307) Putative amidohydrolase LP2961 {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: Putative amidohydrolase LP2961 species: Lactobacillus plantarum [TaxId: 1590]
Probab=94.59 E-value=0.07 Score=46.94 Aligned_cols=55 Identities=9% Similarity=0.154 Sum_probs=42.4
Q ss_pred ChhhHHHHHHHHHHcCCCeEEEEEecCCCccCCHHHHHHHHHHHHHcCCcEEEecC
Q 014320 181 DEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE 236 (427)
Q Consensus 181 ~~~~~~~~~~l~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e 236 (427)
.++..+++++.++..|+.++++.....+. ..+++.+..+.+.|.++|++|.+|..
T Consensus 101 ~~~a~~el~r~~~~~G~~Gi~~~~~~~~~-~~~dp~~~pi~~~~~e~~lpv~~H~~ 155 (306)
T d2f6ka1 101 ELDAVKTVQQALDQDGALGVTVPTNSRGL-YFGSPVLERVYQELDARQAIVALHPN 155 (306)
T ss_dssp HHHHHHHHHHHHHTSCCSEEEEESEETTE-ETTCGGGHHHHHHHHTTTCEEEEECC
T ss_pred hhHHHHHHHHHHhcccceEEEecCccccc-cCCCccchHHHHHHHHcCCceEeccC
Confidence 34566778887756799999987554433 35667889999999999999999953
|
| >d2dvta1 c.1.9.15 (A:1-325) Thermophilic reversible gamma-resorcylate decarboxylase {Rhizobium sp. MTP-10005 [TaxId: 267998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: Thermophilic reversible gamma-resorcylate decarboxylase species: Rhizobium sp. MTP-10005 [TaxId: 267998]
Probab=93.49 E-value=0.17 Score=44.67 Aligned_cols=56 Identities=11% Similarity=0.085 Sum_probs=43.1
Q ss_pred hhhHHHHHHHHHHcCCCeEEEEEecCC-----CccCCHHHHHHHHHHHHHcCCcEEEecCC
Q 014320 182 EVVSDEMEVMVKEKGINSFKFFMAYKG-----SFMINDELLIEGFKRCKSLGALAMVHAEN 237 (427)
Q Consensus 182 ~~~~~~~~~l~~~~g~~~ik~~~~~~~-----~~~~~~~~l~~~~~~a~~~g~~v~~H~e~ 237 (427)
++..+++++.++..|..++++...+.+ ....+++.+..+.+.+.++|++|.+|+.+
T Consensus 107 ~~a~~el~r~~~~~g~~Gv~l~~~~~~~~~~~~~~~~d~~~~pi~~~~~e~~lpv~iH~~~ 167 (325)
T d2dvta1 107 DAATEELQRCVNDLGFVGALVNGFSQEGDGQTPLYYDLPQYRPFWGEVEKLDVPFYLHPRN 167 (325)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEESSBCCTTCCSCBCTTSGGGHHHHHHHHHHTCCEEEECCC
T ss_pred chhhhhhhhhhhcccceEEEEeCCCcCCCCCCcccccCcccchHHHHHhhCCceEEEecCC
Confidence 566788888886778889887654322 23457778999999999999999999743
|
| >d1o12a2 c.1.9.10 (A:44-331) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain domain: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.95 E-value=0.032 Score=47.83 Aligned_cols=30 Identities=10% Similarity=0.011 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHchhhhcC
Q 014320 397 MHLVWDTMVESGQISVTDYVRLTSTEWGRL 426 (427)
Q Consensus 397 l~~~~~~~~~~~~l~l~~~v~~~t~npA~~ 426 (427)
+...+..++++++||++|+++++|.||||+
T Consensus 252 l~~~~~~~v~~~Gls~~eal~~aT~n~A~~ 281 (288)
T d1o12a2 252 FSQAVKNFRKFTGCSITELAKVSSYNSCVE 281 (288)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 333343567777899999999999999985
|
| >d2ooda1 b.92.1.4 (A:3-72,A:398-467) Guanine deaminase {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Bradyrhizobium japonicum [TaxId: 375]
Probab=88.61 E-value=0.07 Score=40.87 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=28.3
Q ss_pred eeeeEEEeCCeEEEeeCCCCC---CCCceEEeCCCCEEe
Q 014320 69 QIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFVM 104 (427)
Q Consensus 69 ~~~~i~i~~g~I~~vg~~~~~---~~~~~viD~~g~~v~ 104 (427)
+++.++|+||+|+++|+.... .++.+++|+.++++.
T Consensus 32 ~DG~llie~G~I~a~G~~~~l~~~~pga~v~d~~d~lg~ 70 (140)
T d2ooda1 32 QDGLMVVTDGVIKAFGPYEKIAAAHPGVEITHIKDRIIV 70 (140)
T ss_dssp EEEEEEEESSBEEEEEEHHHHHHHSTTCEEEEEEEEEEE
T ss_pred cCcEEEEeCCEEEEecCHHHHhhcCCCceEEecCCceEe
Confidence 578999999999999975432 346899999988643
|
| >d2gwga1 c.1.9.15 (A:1-342) 4-oxalomesaconate hydratase LigJ {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: 4-oxalomesaconate hydratase LigJ species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=87.11 E-value=0.83 Score=39.91 Aligned_cols=58 Identities=22% Similarity=0.267 Sum_probs=42.5
Q ss_pred ChhhHHHHHHHHHHcCCCeEEEEEecCC----CccCCHHHHHHHHHHHHHcCCcEEEecCCh
Q 014320 181 DEVVSDEMEVMVKEKGINSFKFFMAYKG----SFMINDELLIEGFKRCKSLGALAMVHAENG 238 (427)
Q Consensus 181 ~~~~~~~~~~l~~~~g~~~ik~~~~~~~----~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~ 238 (427)
.++..+++++.++..+..++++.....+ ....+++.+..+.+.+.++|+++.+|....
T Consensus 121 ~~~a~~e~~~~~~~~~~~gi~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~glpv~~H~~~~ 182 (342)
T d2gwga1 121 PKTCIPELEKCVKEYGFVAINLNPDPSGGHWTSPPLTDRIWYPIYEKMVELEIPAMIHVSTS 182 (342)
T ss_dssp GGGGHHHHHHHHHTSCCCEEEECSCTTSSCCCSCCTTSGGGHHHHHHHHHHTCCEEECCCC-
T ss_pred HHHHHHHHhhhHhhccceEEEEeccccccccCCCCCCCHHHHHHHHHhhcCCCeEEEccCCC
Confidence 3456777777765678888887644321 234577889999999999999999997543
|
| >d3be7a1 b.92.1.9 (A:3-56,A:360-400) Zn-dependent arginine carboxypeptidase {Unidentified organism [TaxId: 32644]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Zn-dependent arginine carboxypeptidase species: Unidentified organism [TaxId: 32644]
Probab=85.12 E-value=1.1 Score=31.38 Aligned_cols=62 Identities=16% Similarity=0.231 Sum_probs=46.6
Q ss_pred ccEEEECcEEEcCCC--ceeeeEEEeCCeEEEeeCCCCCCCCceEEeCCCCEEecccc---cccccccc
Q 014320 53 SKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGI---DPHTHLAM 116 (427)
Q Consensus 53 ~~~~i~~~~i~~~~~--~~~~~i~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~I---D~H~H~~~ 116 (427)
.|++|+.-..++... ....++.|++|.|.+++.... .+++++...+++++|++- ++|.++..
T Consensus 2 ~d~~~~pk~yL~~~~g~li~a~l~v~~G~i~ai~~~t~--~~A~il~l~d~illG~I~~Gk~ADlvlvd 68 (95)
T d3be7a1 2 EDFLIKSKGYLDIQTGEIIKADLLIRNGKIAEIGKINT--KDATVISIPDLILIPQIKEGFDADIVGVI 68 (95)
T ss_dssp CCEEEEEEEEECTTTCCEECCEEEEETTEEEEEECCCC--SSSEEEEEEEEEEEESCCTTSBCCEEEES
T ss_pred CceEecCcceeccccchhhhhhhhhhcCcHHHHHhhcc--ChHHhcCCCCccccceeccCceeeEEEEc
Confidence 357788777776543 457899999999999986322 457899999988788875 77777654
|