Citrus Sinensis ID: 014334

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420------
MMSPNRWDPLSRSLSRPLHLSNSLDNTDIPSVSVDVTICQPQQDPHSLRIEVRNSASGSAPSLSQEQQDALLAQVKRMLRLSEADERNVRDFKRIVRQVAQEEGEESQYMTDFSGRVFRSPTLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQHCSPSISEDFIPQTPAGKESKRRQKVSKVASKLTSRIAESKASSEDYMNLKLDCAGVLEENVQPSFPQNDIESDLHGLNELSTTDPPSARDRIGNFPSPRELANLDESFLAKRCNLGYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVLVCIGFYHVIPTDSETIRHLKQVHARNCTSKTVQMIAESIYGKYAPFQFLAYWSELWHFYEKRFGKLSEMPYSDYKLITASNMGIKNIRKVKRTKIF
ccccccccccccccccccccccccccccccccEEEEEEcccccccccccEEEccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccHHHHHcccHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHcHHHHHHHHHHccccccHHHHHHHHHHccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccc
ccccccccHHHHHcccccccccccccccccEEEEEEEEEccccccccEEEEEEEccccccHcccHHHHHHHHHHHHHHHcccHHcHHHHHHHHHHHHHHHHHcccccHHHHHcccEEEccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHcccEccccccccEccccccccccccccccccccEcccccccccccccccHHccccccccHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccccccccccHHcHHHccHcccccccccEcc
mmspnrwdplsrslsrplhlsnsldntdipsvsvdvticqpqqdphslrievrnsasgsapslsQEQQDALLAQVKRMLRLSEADERNVRDFKRIVRQVAQEegeesqymtdfsgrvfrsptlFEDMVKCMllcncqwprTLSMARALCELQWElqhcspsisedfipqtpagkeskrrQKVSKVASKLTSRiaeskasseDYMNLKLDCagvleenvqpsfpqndiesdlhglnelsttdppsardrignfpsprelanLDESFLAKRCNLGYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSqingfgpftrnnVLVCIGFyhviptdseTIRHLKQVHARNCTSKTVQMIAESiygkyapfQFLAYWSELWHFYEKRFgklsempysdyklitaSNMGIKNIRKVKRTKIF
mmspnrwdplsrslSRPLHLSNSLDNTDIPSVSVDVTICQPQQDPHSLRIEVRNSAsgsapslsqEQQDALLAQVKRMLRlseadernvrdfKRIVRQVaqeegeesqymtdfsgrVFRSPTLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQHCSPSISEDFipqtpagkeskrrqkvskvaskltsriaeskassedYMNLKLDCAGVLEENVQPSFPQNDIESDLHGLNELSTTDPPSARDRIGNFPSPRELANLDESFLAKRCNLGYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVLVCIGFYHVIPTDSETIRHLKQVHARNCTSKTVQMIAESIYGKYAPFQFLAYWSELWHFYEKRFGKLSEMPYSDYKLitasnmgiknirkvkrtkif
MMSPNRWDplsrslsrplhlsnslDNTDIPSVSVDVTICQPQQDPHSLRIEVRNSASGSAPSLSQEQQDALLAQVKRMLRLSEADERNVRDFKRIVRQVAQEEGEESQYMTDFSGRVFRSPTLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQHCSPSISEDFIPQTPAGKESKRRQKVSKVASKLTSRIAESKASSEDYMNLKLDCAGVLEENVQPSFPQNDIESDLHGLNELSTTDPPSARDRIGNFPSPRELANLDESFLAKRCNLGYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVLVCIGFYHVIPTDSETIRHLKQVHARNCTSKTVQMIAESIYGKYAPFQFLAYWSELWHFYEKRFGKLSEMPYSDYKLITASNMGIKNIRKVKRTKIF
***********************************V**********************************************************I*************YMTDFSGRVFRSPTLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQHCSP*********************************************LKLDCAGVL**********************************************LDESFLAKRCNLGYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVLVCIGFYHVIPTDSETIRHLKQVHARNCTSKTVQMIAESIYGKYAPFQFLAYWSELWHFYEKRFGKLSEMPYSDYKLITASNMGIKNI*********
**SPNRWDPLSRSLSRPLHLSNSLDNTDIPSVSVDVTIC*********************************AQVKRMLRLSEADERNVRDFKRIVRQ*AQ*EGEESQYMTDFSGRVFRSPTLFEDMVKCMLLCNCQWPRTLSMARALCELQWE********SEDFIPQTPAGK********SKVASKLTSRIAESKASSEDYMNLKLDCAGVLEENV*****************ELSTTDPPSARDRIGNFPSPRELANLDESFLAKRCNLGYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVLVCIGFYHVIPTDSETIRHLKQVHARNCTSKTVQMIAESIYGKYAPFQFLAYWSELWHFYEK*********************************I*
**************SRPLHLSNSLDNTDIPSVSVDVTICQPQQDPHSLRIEVR*************QQDALLAQVKRMLRLSEADERNVRDFKRIVRQVA*********MTDFSGRVFRSPTLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQHCSPSISEDFIPQT*****************************SEDYMNLKLDCAGVLEENVQPSFPQNDIESDLHGLNELSTTDPPSARDRIGNFPSPRELANLDESFLAKRCNLGYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVLVCIGFYHVIPTDSETIRHLKQVHARNCTSKTVQMIAESIYGKYAPFQFLAYWSELWHFYEKRFGKLSEMPYSDYKLITASNMGIKNIRKVKRTKIF
****NRWDPLSRSLSRPLHLSNSLDNTDIPSVSVDVTICQPQQDPHSLRIEVRNSASGSAPSLSQEQQDALLAQVKRMLRLSEADERNVRDFKRIVRQVAQEEGEESQYMTDFSGRVFRSPTLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQHCS******FIPQTPAGK*S******SKVASKLTSRIAESKASSEDYMNLKLDCAGVLEENVQPSF**NDIESDLHGLNELSTTDPPSARDRIGNFPSPRELANLDESFLAKRCNLGYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVLVCIGFYHVIPTDSETIRHLKQVHARNCTSKTVQMIAESIYGKYAPFQFLAYWSELWHFYEKRFGKLSEMPYSDYKLITASNMGIKNIRKVKRT**F
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MMSPNRWDPLSRSLSRPLHLSNSLDNTDIPSVSVDVTICQPQQDPHSLRIEVRNSASGSAPSLSQEQQDALLAQVKRMLRLSEADERNVRDFKRIVRQVAQEEGEESQYMTDFSGRVFRSPTLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQHCSPSISEDFIPQTPAGKESKRRQKVSKVASKLTSRIAESKASSEDYMNLKLDCAGVLEENVQPSFPQNDIESDLHGLNELSTTDPPSARDRIGNFPSPRELANLDESFLAKRCNLGYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVLVCIGFYHVIPTDSETIRHLKQVHARNCTSKTVQMIAESIYGKYAPFQFLAYWSELWHFYEKRFGKLSEMPYSDYKLITASNMGIKNIRKVKRTKIF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query426
255556701458 conserved hypothetical protein [Ricinus 0.938 0.873 0.539 1e-121
224073560445 predicted protein [Populus trichocarpa] 0.861 0.824 0.531 1e-108
356532390426 PREDICTED: uncharacterized protein LOC10 0.884 0.884 0.518 1e-108
218200178463 hypothetical protein OsI_27177 [Oryza sa 0.917 0.844 0.483 2e-93
222637605442 hypothetical protein OsJ_25428 [Oryza sa 0.901 0.868 0.475 2e-86
22775617501 hypothetical protein [Oryza sativa Japon 0.920 0.782 0.436 1e-84
297607746465 Os07g0657600 [Oryza sativa Japonica Grou 0.772 0.707 0.420 3e-63
255546670457 conserved hypothetical protein [Ricinus 0.523 0.487 0.370 6e-40
320165998507 hypothetical protein CAOG_08029 [Capsasp 0.715 0.601 0.275 5e-26
384248678406 DNA glycosylase [Coccomyxa subellipsoide 0.370 0.389 0.408 2e-25
>gi|255556701|ref|XP_002519384.1| conserved hypothetical protein [Ricinus communis] gi|223541451|gb|EEF43001.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 240/445 (53%), Positives = 291/445 (65%), Gaps = 45/445 (10%)

Query: 1   MMSPNRWDPLSRSLSRPLHLSNSLDNTDIPSVSVDVTICQPQQDPHSLRIEVRNSASGSA 60
           M+SPN WDPLSR+ SRPL L++  DN+ + S+S        Q    SL + V  + S   
Sbjct: 35  MLSPNHWDPLSRTFSRPLRLNDDTDNSLMVSIS--------QHLSKSLLVRVYGNRS--- 83

Query: 61  PSLSQEQQDALLAQVKRMLRLSEADERNVRDFKRIVRQVAQEEGEESQYMTDFSGRVFRS 120
             LS + Q++LL Q+ RMLRLS+ DE N R+F++IV      EGEE   + DF GRV RS
Sbjct: 84  --LSPKHQESLLVQIVRMLRLSDMDEFNAREFRKIVSAF---EGEECPLIGDFGGRVLRS 138

Query: 121 PTLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQHCSPSISE---DFIPQTPAGKESK 177
           PTLFEDMVKC+LLCNCQW RTLSMA ALC+ Q EL   SP        FIP TP  KE K
Sbjct: 139 PTLFEDMVKCILLCNCQWSRTLSMADALCKFQIELHSQSPQQKHAFNHFIPNTPVKKEPK 198

Query: 178 RRQKVSKVASK----------LTSRIAESKASSE-------DYMNLKLDCAGVLEENVQP 220
           R+ ++SKV ++          LT+  ++ K S+         + NLK  C G        
Sbjct: 199 RKIRLSKVPTESMDLEAADTCLTTDDSQMKISNSLNCVDDGSFDNLK-SCQGSNTFYSTG 257

Query: 221 SFPQNDIESDLHGLNELSTTDPPSARDRIGNFPSPRELANLDESFLAKRCNLGYRAGRIL 280
            +  +DI+S L             A+   GNFPSPRELANLDE FLAKRC LGYRAGRI+
Sbjct: 258 PYATSDIQSHL--------VTQHCAKKTTGNFPSPRELANLDERFLAKRCGLGYRAGRII 309

Query: 281 KLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVLVCIGFYHVIP 340
           KLA+GIV+G+I LRE E + N  SL+ Y KL +QL +I GFGPFTR NVL+C+GFYHVIP
Sbjct: 310 KLAQGIVEGRIPLREFEQVSNGGSLSTYSKLTDQLREIEGFGPFTRANVLMCMGFYHVIP 369

Query: 341 TDSETIRHLKQVHARNCTSKTVQMIAESIYGKYAPFQFLAYWSELWHFYEKRFGKLSEMP 400
           TDSET+RH KQVHA+N T KTVQ  AE IY K+APFQFL YW+ELWHFYE+RFGKLSEMP
Sbjct: 370 TDSETVRHFKQVHAKNSTIKTVQSEAEEIYRKFAPFQFLVYWAELWHFYEQRFGKLSEMP 429

Query: 401 YSDYKLITASNMGIKNIRKVKRTKI 425
            S+YKLITASN+  K   K KR KI
Sbjct: 430 CSNYKLITASNLRNKGHHKAKRAKI 454

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224073560|ref|XP_002304112.1| predicted protein [Populus trichocarpa] gi|222841544|gb|EEE79091.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356532390|ref|XP_003534756.1| PREDICTED: uncharacterized protein LOC100781827 [Glycine max] Back     alignment and taxonomy information
>gi|218200178|gb|EEC82605.1| hypothetical protein OsI_27177 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|222637605|gb|EEE67737.1| hypothetical protein OsJ_25428 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|22775617|dbj|BAC15471.1| hypothetical protein [Oryza sativa Japonica Group] gi|50510134|dbj|BAD31099.1| hypothetical protein [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|297607746|ref|NP_001060514.2| Os07g0657600 [Oryza sativa Japonica Group] gi|255678034|dbj|BAF22428.2| Os07g0657600, partial [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|255546670|ref|XP_002514394.1| conserved hypothetical protein [Ricinus communis] gi|223546491|gb|EEF47990.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|320165998|gb|EFW42897.1| hypothetical protein CAOG_08029 [Capsaspora owczarzaki ATCC 30864] Back     alignment and taxonomy information
>gi|384248678|gb|EIE22161.1| DNA glycosylase [Coccomyxa subellipsoidea C-169] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.20.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query426
COG0122285 COG0122, AlkA, 3-methyladenine DNA glycosylase/8-o 2e-11
smart00478149 smart00478, ENDO3c, endonuclease III 2e-04
cd00056158 cd00056, ENDO3c, endonuclease III; includes endonu 2e-04
>gnl|CDD|223200 COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information 
 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 16/145 (11%)

Query: 252 FPSPRELANLDESFLAKRCNLGYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKL 311
           FP+P +LA  DE  L +    G +A  I+ LAR   +G++ L EL+ + +E         
Sbjct: 144 FPTPEQLAAADEEALRRCGLSGRKAEYIISLARAAAEGELDLSELKPLSDEE-------A 196

Query: 312 AEQLSQINGFGPFTRNNVLV-CIGFYHVIPTDSETIRH-LKQVHA--RNCTSKTVQMIAE 367
            E+L+ + G GP+T    L+  +G   V P D   +R  +K+++      T K V+ +AE
Sbjct: 197 IEELTALKGIGPWTAEMFLLFGLGRPDVFPADDLGLRRAIKKLYRLPTRPTEKEVRELAE 256

Query: 368 SIYGKYAPFQFLAYWSELWHFYEKR 392
                + P++  A    LW +    
Sbjct: 257 R----WGPYRSYAALY-LWRYARAT 276

Length = 285
>gnl|CDD|214684 smart00478, ENDO3c, endonuclease III Back     alignment and domain information
>gnl|CDD|238013 cd00056, ENDO3c, endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 426
KOG2875323 consensus 8-oxoguanine DNA glycosylase [Replicatio 100.0
TIGR00588310 ogg 8-oxoguanine DNA-glycosylase (ogg). All protei 100.0
PRK10308283 3-methyl-adenine DNA glycosylase II; Provisional 100.0
COG0122285 AlkA 3-methyladenine DNA glycosylase/8-oxoguanine 100.0
cd00056158 ENDO3c endonuclease III; includes endonuclease III 99.92
PRK10702211 endonuclease III; Provisional 99.9
KOG1918254 consensus 3-methyladenine DNA glycosidase [Replica 99.89
TIGR01083191 nth endonuclease III. This equivalog model identif 99.89
PRK13913218 3-methyladenine DNA glycosylase; Provisional 99.87
TIGR01084275 mutY A/G-specific adenine glycosylase. This equiva 99.87
COG0177211 Nth Predicted EndoIII-related endonuclease [DNA re 99.86
PRK10880 350 adenine DNA glycosylase; Provisional 99.84
smart00478149 ENDO3c endonuclease III. includes endonuclease III 99.84
PRK13910289 DNA glycosylase MutY; Provisional 99.77
PRK01229208 N-glycosylase/DNA lyase; Provisional 99.76
PF00730108 HhH-GPD: HhH-GPD superfamily base excision DNA rep 99.52
TIGR03252177 uncharacterized HhH-GPD family protein. This model 99.48
COG1194 342 MutY A/G-specific DNA glycosylase [DNA replication 99.47
COG2231215 Uncharacterized protein related to Endonuclease II 99.45
KOG1921286 consensus Endonuclease III [Replication, recombina 99.29
PF07934117 OGG_N: 8-oxoguanine DNA glycosylase, N-terminal do 98.44
KOG2457 555 consensus A/G-specific adenine DNA glycosylase [Re 98.16
COG1059210 Thermostable 8-oxoguanine DNA glycosylase [DNA rep 97.59
PF0063330 HHH: Helix-hairpin-helix motif; InterPro: IPR00044 97.32
PF06029116 AlkA_N: AlkA N-terminal domain; InterPro: IPR01031 95.98
smart0027826 HhH1 Helix-hairpin-helix DNA-binding motif class 1 93.89
PRK13901196 ruvA Holliday junction DNA helicase RuvA; Provisio 92.21
PRK14606188 ruvA Holliday junction DNA helicase RuvA; Provisio 89.67
PRK14601183 ruvA Holliday junction DNA helicase RuvA; Provisio 89.64
PF1282664 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS 89.42
PF1471668 HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HU 88.91
smart00483 334 POLXc DNA polymerase X family. includes vertebrate 87.56
TIGR00084191 ruvA Holliday junction DNA helicase, RuvA subunit. 85.98
PF1452060 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU 85.33
PRK14605194 ruvA Holliday junction DNA helicase RuvA; Provisio 85.1
PRK00076196 recR recombination protein RecR; Reviewed 84.33
COG0632201 RuvA Holliday junction resolvasome, DNA-binding su 83.91
COG0353198 RecR Recombinational DNA repair protein (RecF path 83.9
TIGR00615195 recR recombination protein RecR. This family is ba 83.88
PRK13844200 recombination protein RecR; Provisional 83.2
PRK14600186 ruvA Holliday junction DNA helicase RuvA; Provisio 82.34
PF0237187 Transposase_20: Transposase IS116/IS110/IS902 fami 82.1
PRK14603197 ruvA Holliday junction DNA helicase RuvA; Provisio 81.92
>KOG2875 consensus 8-oxoguanine DNA glycosylase [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=2.3e-48  Score=375.48  Aligned_cols=241  Identities=20%  Similarity=0.260  Sum_probs=197.1

Q ss_pred             eEEEEEeccCCCCCceEEEEeccCCCCCCCCCHHHHHHHHHHHHHHhcCCchhhHhhHHHHHHHHHHHhhhchhhhcccC
Q 014334           33 SVDVTICQPQQDPHSLRIEVRNSASGSAPSLSQEQQDALLAQVKRMLRLSEADERNVRDFKRIVRQVAQEEGEESQYMTD  112 (426)
Q Consensus        33 ~~~v~i~q~~~~~~~L~~~v~~~~~~~~~~ls~~~~~~i~~~v~r~l~Ld~d~~~~~~~f~~~~~~~~~~~~~~~~~~~~  112 (426)
                      .-+|++.|.  ++....|++.-+    +.+..+.+.    +.|+.||+||++|..++..|-..+.+|..+++        
T Consensus        46 ~~v~~L~Q~--ee~~~~y~~~~s----~~~p~~del----~~i~~yf~ldv~L~~l~~~W~~~D~~F~~la~--------  107 (323)
T KOG2875|consen   46 DQVWTLTQT--EEQCTVYRGDKS----ASRPTPDEL----EAISKYFQLDVTLAQLYHHWGSVDDHFQELAQ--------  107 (323)
T ss_pred             cEEEEEEec--CCceEEEEeecC----CCCCChHHH----HHHHHHHhheeeHHHHHHHhCcCChHHHHHHH--------
Confidence            346788886  444577777663    223334332    35789999999999999999999999988873        


Q ss_pred             CcccccCCCChHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhhh
Q 014334          113 FSGRVFRSPTLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQHCSPSISEDFIPQTPAGKESKRRQKVSKVASKLTSR  192 (426)
Q Consensus       113 ~ggRvlr~p~~fE~lv~~I~s~N~~~~r~~~m~~~Lc~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  192 (426)
                      .|.|+||| ||||||++|||||||||+||++|+++||..+|+.                |+                   
T Consensus       108 qgvRlLrQ-dP~E~lfSFiCSSNNNIaRIT~Mve~fc~~fG~~----------------i~-------------------  151 (323)
T KOG2875|consen  108 QGVRLLRQ-DPIECLFSFICSSNNNIARITGMVERFCQAFGPR----------------II-------------------  151 (323)
T ss_pred             hhhHHHhc-CcHHHHHHHHhcCCCcHHHHHHHHHHHHHhhCcc----------------eE-------------------
Confidence            47899998 8999999999999999999999999999999873                32                   


Q ss_pred             hhhhhcchhhhhhhhcccccccccCCCCCCCCCCcccccccccCCCCCCCCcccccccCCCCHHHHhcC-CHHHHHHHCc
Q 014334          193 IAESKASSEDYMNLKLDCAGVLEENVQPSFPQNDIESDLHGLNELSTTDPPSARDRIGNFPSPRELANL-DESFLAKRCN  271 (426)
Q Consensus       193 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~FPtpe~La~~-~~e~Lr~~~g  271 (426)
                                                           .+||.             .+|.|||.+.|+.. .+++||+ .|
T Consensus       152 -------------------------------------~~dg~-------------~~h~FPsl~~L~g~~~Ea~LR~-~g  180 (323)
T KOG2875|consen  152 -------------------------------------QLDGV-------------DYHGFPSLQALAGPEVEAELRK-LG  180 (323)
T ss_pred             -------------------------------------eecCc-------------ccccCccHHHhcCcHhHHHHHH-cC
Confidence                                                 45664             78999999999964 4557997 99


Q ss_pred             CcHHHHHHHHHHHHHHhCCCChhHHHhhhhhcccccHHHHHHHHhcCCCcCHHHHHHH-HHHhCCCCccccchHHHHHHH
Q 014334          272 LGYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNV-LVCIGFYHVIPTDSETIRHLK  350 (426)
Q Consensus       272 ~GyRAkyI~~lA~~i~eg~ldLe~L~~l~~~~~~~~~eea~e~L~~L~GIGpkTAd~I-L~~Lg~~dvfPvDthV~Ril~  350 (426)
                      |||||+||.++|++|.+..--++.|..+++    .+||++++.|+.+||||||+|||| ||+|+.+.++|||+|++||++
T Consensus       181 fGYRAkYI~~ta~~l~~~~g~~~wLqsl~~----~~yeear~~L~~lpGVG~KVADCI~Lm~l~~~~~VPVDvHi~ria~  256 (323)
T KOG2875|consen  181 FGYRAKYISATARALQEKQGGLAWLQSLRK----SSYEEAREALCSLPGVGPKVADCICLMSLDKLSAVPVDVHIWRIAQ  256 (323)
T ss_pred             cchhHHHHHHHHHHHHHhcccchHHHHHhc----ccHHHHHHHHhcCCCCcchHhhhhhhhhcCCCCcccchhhHHHHhh
Confidence            999999999999999985443344444322    399999999999999999999999 599999999999999999999


Q ss_pred             HhhccC------CC---HHHHHHHHHHHhcCCChH-HHHHHH
Q 014334          351 QVHARN------CT---SKTVQMIAESIYGKYAPF-QFLAYW  382 (426)
Q Consensus       351 rly~~~------~t---~k~i~~~~~e~~g~~agw-q~l~fw  382 (426)
                      .++..+      .+   +.++..++++.||+|||| |.++|-
T Consensus       257 ~y~l~~~~g~k~l~~ki~~ev~~~f~~~~G~YAGwAQ~~lfs  298 (323)
T KOG2875|consen  257 DYILPGLSGAKELTPKINGEVSNFFRSLWGEYAGWAQAVLFS  298 (323)
T ss_pred             cccCCCccccccCCcchhHHHHHHHHHHhcccccchhheeec
Confidence            554433      12   467889999999999999 999884

>TIGR00588 ogg 8-oxoguanine DNA-glycosylase (ogg) Back     alignment and domain information
>PRK10308 3-methyl-adenine DNA glycosylase II; Provisional Back     alignment and domain information
>COG0122 AlkA 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>cd00056 ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases Back     alignment and domain information
>PRK10702 endonuclease III; Provisional Back     alignment and domain information
>KOG1918 consensus 3-methyladenine DNA glycosidase [Replication, recombination and repair] Back     alignment and domain information
>TIGR01083 nth endonuclease III Back     alignment and domain information
>PRK13913 3-methyladenine DNA glycosylase; Provisional Back     alignment and domain information
>TIGR01084 mutY A/G-specific adenine glycosylase Back     alignment and domain information
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK10880 adenine DNA glycosylase; Provisional Back     alignment and domain information
>smart00478 ENDO3c endonuclease III Back     alignment and domain information
>PRK13910 DNA glycosylase MutY; Provisional Back     alignment and domain information
>PRK01229 N-glycosylase/DNA lyase; Provisional Back     alignment and domain information
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4 Back     alignment and domain information
>TIGR03252 uncharacterized HhH-GPD family protein Back     alignment and domain information
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1921 consensus Endonuclease III [Replication, recombination and repair] Back     alignment and domain information
>PF07934 OGG_N: 8-oxoguanine DNA glycosylase, N-terminal domain; InterPro: IPR012904 The presence of 8-oxoguanine residues in DNA can give rise to G-C to T-A transversion mutations Back     alignment and domain information
>KOG2457 consensus A/G-specific adenine DNA glycosylase [Replication, recombination and repair] Back     alignment and domain information
>COG1059 Thermostable 8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ] Back     alignment and domain information
>PF06029 AlkA_N: AlkA N-terminal domain; InterPro: IPR010316 This domain is found at the N terminus of bacterial AlkA 3 Back     alignment and domain information
>smart00278 HhH1 Helix-hairpin-helix DNA-binding motif class 1 Back     alignment and domain information
>PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B Back     alignment and domain information
>PF14716 HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HUZ_A 1HUO_A 2BPG_B 2BPF_A 1DK3_A 1BPE_A 1BNO_A 1BNP_A 1DK2_A Back     alignment and domain information
>smart00483 POLXc DNA polymerase X family Back     alignment and domain information
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit Back     alignment and domain information
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A Back     alignment and domain information
>PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PRK00076 recR recombination protein RecR; Reviewed Back     alignment and domain information
>COG0632 RuvA Holliday junction resolvasome, DNA-binding subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00615 recR recombination protein RecR Back     alignment and domain information
>PRK13844 recombination protein RecR; Provisional Back     alignment and domain information
>PRK14600 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PF02371 Transposase_20: Transposase IS116/IS110/IS902 family; InterPro: IPR003346 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA Back     alignment and domain information
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query426
2xhi_A360 N-glycosylase/DNA lyase; lyase-DNA complex, lyase/ 4e-15
3i0w_A290 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8- 7e-15
2h56_A233 DNA-3-methyladenine glycosidase; 10174367, EC 3.2. 3e-06
1mpg_A282 ALKA, 3-methyladenine DNA glycosylase II; DNA repa 2e-05
3s6i_A228 DNA-3-methyladenine glycosylase 1; DNA glycosylase 8e-05
2yg9_A225 DNA-3-methyladenine glycosidase II, putative; hydr 4e-04
2jhn_A295 ALKA, 3-methyladenine DNA-glycosylase; DNA repair, 4e-04
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ... Length = 360 Back     alignment and structure
 Score = 75.5 bits (185), Expect = 4e-15
 Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 14/158 (8%)

Query: 252 FPSPRELANLDESFLAKRCNLGYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKL 311
           FPS + LA  +     ++  LGYRA  +   AR I++ Q  L  L+ +       +Y + 
Sbjct: 196 FPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRES----SYEEA 251

Query: 312 AEQLSQINGFGPFTRNNV-LVCIGFYHVIPTDSETIRHLKQVHARNCTSKTVQMIAESIY 370
            + L  + G G    + + L+ +     +P +       ++ ++ + T+   +  +    
Sbjct: 252 HKALCILPGVGTCVADKICLMALDKPQAVPVNVHMWHIAQRDYSWHPTTSQAKGPSPQTN 311

Query: 371 GKYAPFQFLAYWSE--------LWHFYEKRFGKLSEMP 400
            +   F F + W          L+    ++     E P
Sbjct: 312 KELGNF-FRSLWGPYAGWAQAVLFSADLRQSRHAQEPP 348
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A Length = 290 Back     alignment and structure
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans} Length = 233 Back     alignment and structure
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A* Length = 282 Back     alignment and structure
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe} Length = 228 Back     alignment and structure
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A Length = 225 Back     alignment and structure
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A Length = 295 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query426
3i0w_A290 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8- 100.0
2jhn_A295 ALKA, 3-methyladenine DNA-glycosylase; DNA repair, 100.0
2xhi_A360 N-glycosylase/DNA lyase; lyase-DNA complex, lyase/ 100.0
1mpg_A282 ALKA, 3-methyladenine DNA glycosylase II; DNA repa 100.0
4b21_A232 Probable DNA-3-methyladenine glycosylase 2; hydrol 100.0
3s6i_A228 DNA-3-methyladenine glycosylase 1; DNA glycosylase 100.0
2yg9_A225 DNA-3-methyladenine glycosidase II, putative; hydr 99.98
2h56_A233 DNA-3-methyladenine glycosidase; 10174367, EC 3.2. 99.97
1kg2_A225 A/G-specific adenine glycosylase; DNA repair, hydr 99.91
2abk_A211 Endonuclease III; DNA-repair, DNA glycosylase; 1.8 99.91
1pu6_A218 3-methyladenine DNA glycosylase; helix-hairpin-hel 99.9
1orn_A226 Endonuclease III; DNA repair, DNA glycosylase, [4F 99.9
1kea_A221 Possible G-T mismatches repair enzyme; DNA repair, 99.89
3fsp_A 369 A/G-specific adenine glycosylase; protein-DNA comp 99.87
3n5n_X287 A/G-specific adenine DNA glycosylase; alpha-helice 99.84
3fhg_A207 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 99.84
3n0u_A219 Probable N-glycosylase/DNA lyase; structural genom 99.77
3fhf_A214 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 99.73
4e9f_A161 Methyl-CPG-binding domain protein 4; HHH DNA glyco 99.7
3vdp_A212 Recombination protein RECR; zinc finger, DNA repai 85.72
2fmp_A 335 DNA polymerase beta; nucleotidyl transferase, tran 85.6
1vdd_A 228 Recombination protein RECR; helix-hairpin-helix, z 84.11
4glx_A586 DNA ligase; inhibitor, ligase-ligase inhibitor-DNA 82.22
2bcq_A 335 DNA polymerase lambda; misalignment, extrahelical, 81.82
2ihm_A 360 POL MU, DNA polymerase MU; helix-turn-helix, trans 81.67
2bcq_A 335 DNA polymerase lambda; misalignment, extrahelical, 80.39
3b0x_A 575 DNA polymerase beta family (X family); structural 80.07
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A Back     alignment and structure
Probab=100.00  E-value=5.6e-41  Score=330.86  Aligned_cols=235  Identities=15%  Similarity=0.266  Sum_probs=189.2

Q ss_pred             EEEEeccCCCCCceEEEEeccCCCCCCCCCHHHHHHHHHHHHHHhcCCchhhHhhHHHHHHHHHHHhhhchhhhcccCCc
Q 014334           35 DVTICQPQQDPHSLRIEVRNSASGSAPSLSQEQQDALLAQVKRMLRLSEADERNVRDFKRIVRQVAQEEGEESQYMTDFS  114 (426)
Q Consensus        35 ~v~i~q~~~~~~~L~~~v~~~~~~~~~~ls~~~~~~i~~~v~r~l~Ld~d~~~~~~~f~~~~~~~~~~~~~~~~~~~~~g  114 (426)
                      .|.|+|.   ++.|.  +++.           +.+.+.+.+++||+||.|    +.++++....++.++... +.  ..|
T Consensus        51 ~~~l~q~---~~~~~--~~~~-----------~~~~~~~~~~~~fdLd~d----~~~~~~~l~~Dp~l~~~~-~~--~~g  107 (290)
T 3i0w_A           51 VVEVQKI---GEDVV--IYNI-----------NEEEFKNVWSEYFDLYRD----YGEIKKELSRDPLLKKSV-DF--GEG  107 (290)
T ss_dssp             EEEEEEE---TTEEE--EETC-----------CHHHHHHTHHHHTTTTSC----HHHHHHHHTTSHHHHHHH-HH--TTT
T ss_pred             EEEEEEc---CCEEE--EEcC-----------CHHHHHHHHHHHcCCCCC----HHHHHHHHhhCHHHHHHH-HH--CCC
Confidence            5688885   55554  3331           235678889999999999    666665444444444221 11  235


Q ss_pred             ccccCCCChHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhhhhh
Q 014334          115 GRVFRSPTLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQHCSPSISEDFIPQTPAGKESKRRQKVSKVASKLTSRIA  194 (426)
Q Consensus       115 gRvlr~p~~fE~lv~~I~s~N~~~~r~~~m~~~Lc~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  194 (426)
                      .|+++ +|+||+||++||+||+++.++.+|.++||++||+                |+                      
T Consensus       108 lR~~~-~dpfE~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~----------------~~----------------------  148 (290)
T 3i0w_A          108 IRILR-QDPFEILLSFIISANNRIPMIKKCINNISEKAGK----------------KL----------------------  148 (290)
T ss_dssp             CCCCC-CCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSC----------------EE----------------------
T ss_pred             CCCCC-CCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCC----------------Cc----------------------
Confidence            69999 6999999999999999999999999999999987                11                      


Q ss_pred             hhhcchhhhhhhhcccccccccCCCCCCCCCCcccccccccCCCCCCCCcccccccCCCCHHHHhcCCHHHHHHHCcCcH
Q 014334          195 ESKASSEDYMNLKLDCAGVLEENVQPSFPQNDIESDLHGLNELSTTDPPSARDRIGNFPSPRELANLDESFLAKRCNLGY  274 (426)
Q Consensus       195 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~FPtpe~La~~~~e~Lr~~~g~Gy  274 (426)
                                                         ..+|             ..++.||||++|+++++++|++ +|+||
T Consensus       149 -----------------------------------~~~g-------------~~~~~fPtpe~la~~~~e~L~~-~g~g~  179 (290)
T 3i0w_A          149 -----------------------------------EYKG-------------KIYYAFPTVDKLHEFTEKDFEE-CTAGF  179 (290)
T ss_dssp             -----------------------------------EETT-------------EEEECCCCHHHHTTCCHHHHHH-TTCGG
T ss_pred             -----------------------------------ccCC-------------cccccCCcHHHHHCCCHHHHHH-cCCch
Confidence                                               1112             3689999999999999999998 99999


Q ss_pred             HHHHHHHHHHHHHhCCCChhHHHhhhhhcccccHHHHHHHHhcCCCcCHHHHHHHH-HHhCCCCccccchHHHHHHHHhh
Q 014334          275 RAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL-VCIGFYHVIPTDSETIRHLKQVH  353 (426)
Q Consensus       275 RAkyI~~lA~~i~eg~ldLe~L~~l~~~~~~~~~eea~e~L~~L~GIGpkTAd~IL-~~Lg~~dvfPvDthV~Ril~rly  353 (426)
                      ||+||+++|+.+.+|.++++.|.++       +++++++.|++|||||||||+||| |++|++|+||+|+||+|+++++|
T Consensus       180 Ra~~I~~~A~~i~~g~~~l~~l~~~-------~~~~~~~~L~~lpGIG~~TA~~ill~~lg~pd~fpvD~~v~r~~~rl~  252 (290)
T 3i0w_A          180 RAKYLKDTVDRIYNGELNLEYIKSL-------NDNECHEELKKFMGVGPQVADCIMLFSMQKYSAFPVDTWVKKAMMSLY  252 (290)
T ss_dssp             GHHHHHHHHHHHHTTSSCHHHHHHS-------CHHHHHHHHTTSTTCCHHHHHHHHHHHHCCTTCCCCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHhcC-------CHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCcceecHHHHHHHHHhc
Confidence            9999999999999999999999987       899999999999999999999996 89999999999999999999999


Q ss_pred             ccC-CCHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 014334          354 ARN-CTSKTVQMIAESIYGKYAPFQFLAYWSELWHFYEK  391 (426)
Q Consensus       354 ~~~-~t~k~i~~~~~e~~g~~agwq~l~fw~~Lw~~y~~  391 (426)
                      +.+ .+++++.+.+++.|++|++|   +. ..||++++.
T Consensus       253 ~~~~~~~~~i~~~~~~~~~p~~~~---A~-~~Lw~~~R~  287 (290)
T 3i0w_A          253 VAPDVSLKKIRDFGREKFGSLSGF---AQ-QYLFYYARE  287 (290)
T ss_dssp             SCTTCCHHHHHHHHHHHHGGGHHH---HH-HHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHhhcchHHHH---HH-HHHHHhhhh
Confidence            865 56778877777777755554   44 236666543
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A Back     alignment and structure
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ... Back     alignment and structure
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A* Back     alignment and structure
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A* Back     alignment and structure
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe} Back     alignment and structure
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A Back     alignment and structure
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans} Back     alignment and structure
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A Back     alignment and structure
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1 Back     alignment and structure
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A* Back     alignment and structure
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A* Back     alignment and structure
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2 Back     alignment and structure
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A* Back     alignment and structure
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens} Back     alignment and structure
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus} Back     alignment and structure
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima} Back     alignment and structure
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A* Back     alignment and structure
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A Back     alignment and structure
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D Back     alignment and structure
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ... Back     alignment and structure
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A Back     alignment and structure
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli} Back     alignment and structure
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ... Back     alignment and structure
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus} Back     alignment and structure
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ... Back     alignment and structure
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query426
d2noha1190 8-oxoguanine glycosylase {Human (Homo sapiens) [Ta 100.0
d1mpga1183 3-Methyladenine DNA glycosylase II (gene alkA or a 100.0
d1pu6a_217 3-Methyladenine DNA glycosylase III (MagIII) {Heli 99.91
d1keaa_217 Thymine-DNA glycosylase {Archaeon Methanobacterium 99.83
d2abka_211 Endonuclease III {Escherichia coli [TaxId: 562]} 99.81
d1kg2a_224 Catalytic domain of MutY {Escherichia coli [TaxId: 99.81
d1orna_214 Endonuclease III {Escherichia coli [TaxId: 562]} 99.8
d1rrqa1221 Catalytic domain of MutY {Bacillus stearothermophi 99.79
d1ngna_144 Mismatch-specific thymine glycosylase domain of th 99.69
d2noha2124 8-oxoguanine glycosylase {Human (Homo sapiens) [Ta 97.55
d1mpga299 3-Methyladenine DNA glycosylase II (gene alkA or a 94.46
d1cuka278 DNA helicase RuvA subunit, middle domain {Escheric 93.73
d1ixra173 DNA helicase RuvA subunit, middle domain {Thermus 93.32
d1bvsa271 DNA helicase RuvA subunit, middle domain {Mycobact 91.13
d1kfta_56 Excinuclease UvrC C-terminal domain {Escherichia c 89.6
d1x2ia168 ATP-dependent RNA helicase PF2015 {Pyrococcus furi 89.32
d1dgsa1181 NAD+-dependent DNA ligase, domain 3 {Thermus filif 89.12
d1bvsa271 DNA helicase RuvA subunit, middle domain {Mycobact 89.02
d1cuka278 DNA helicase RuvA subunit, middle domain {Escheric 88.49
d1ixra173 DNA helicase RuvA subunit, middle domain {Thermus 88.29
d2bcqa176 DNA polymerase lambda {Human (Homo sapiens) [TaxId 86.84
d1vdda_199 Recombination protein RecR {Deinococcus radioduran 86.21
d2a1ja162 DNA repair endonuclease XPF {Human (Homo sapiens) 85.07
d2edua191 KIF22, C-terminal domain {Human (Homo sapiens) [Ta 83.69
d2bgwa170 DNA repair endonuclease XPF {Aeropyrum pernix [Tax 81.99
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: DNA repair glycosylase, 2 C-terminal domains
domain: 8-oxoguanine glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-37  Score=286.07  Aligned_cols=176  Identities=20%  Similarity=0.266  Sum_probs=149.3

Q ss_pred             ChHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhhhhhhhhcchh
Q 014334          122 TLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQHCSPSISEDFIPQTPAGKESKRRQKVSKVASKLTSRIAESKASSE  201 (426)
Q Consensus       122 ~~fE~lv~~I~s~N~~~~r~~~m~~~Lc~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  201 (426)
                      ||||+||++|||||++++++.+|.++||+.||+.                +.                            
T Consensus         1 DPfe~lv~~IisQq~s~~~~~~~~~~L~~~~G~~----------------~~----------------------------   36 (190)
T d2noha1           1 DPIECLFSFICSSNNNIARITGMVERLCQAFGPR----------------LI----------------------------   36 (190)
T ss_dssp             CHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHSCE----------------EE----------------------------
T ss_pred             ChHHHHHHHHHHcccCHHHHHHHHHHHHHHHCCC----------------cc----------------------------
Confidence            7999999999999999999999999999999972                11                            


Q ss_pred             hhhhhhcccccccccCCCCCCCCCCcccccccccCCCCCCCCcccccccCCCCHHHHhcCCHHHHHHHCcCcHHHHHHHH
Q 014334          202 DYMNLKLDCAGVLEENVQPSFPQNDIESDLHGLNELSTTDPPSARDRIGNFPSPRELANLDESFLAKRCNLGYRAGRILK  281 (426)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~FPtpe~La~~~~e~Lr~~~g~GyRAkyI~~  281 (426)
                                                  ..++             ..+|.||||++|+.++++++.+.+|++|||+||++
T Consensus        37 ----------------------------~~~~-------------~~~~~FP~~~~la~~~~e~~l~~~~~~~ra~~i~~   75 (190)
T d2noha1          37 ----------------------------QLDD-------------VTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSA   75 (190)
T ss_dssp             ----------------------------EETT-------------EEEECCCCHHHHHSTTHHHHHHHTTCTTHHHHHHH
T ss_pred             ----------------------------ccCc-------------chhhccCCHHHHHHcchHHHHHhcchHHHHHHHHH
Confidence                                        2222             25799999999999999887777999999999999


Q ss_pred             HHHHHHhCCCChhHHHhhhhhcccccHHHHHHHHhcCCCcCHHHHHHHH-HHhCCCCccccchHHHHHHHHhhccCCC--
Q 014334          282 LARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL-VCIGFYHVIPTDSETIRHLKQVHARNCT--  358 (426)
Q Consensus       282 lA~~i~eg~ldLe~L~~l~~~~~~~~~eea~e~L~~L~GIGpkTAd~IL-~~Lg~~dvfPvDthV~Ril~rly~~~~t--  358 (426)
                      +|+.+.++......+..+..    .+++++++.|++|||||||||+||| +++|++|+||+|+||+|++.|+|+...+  
T Consensus        76 ~a~~i~~~~~~~~~l~~l~~----~~~~~~~~~L~~l~GIG~wTA~~il~~~~~~~d~fpvD~~v~R~~~r~~~~~~~~~  151 (190)
T d2noha1          76 SARAILEEQGGLAWLQQLRE----SSYEEAHKALCILPGVGTQVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTS  151 (190)
T ss_dssp             HHHHHHHTSCSHHHHHHTTT----SCHHHHHHHHTTSTTCCHHHHHHHHHHHSCCTTCCCCCHHHHHHHHHHHCCCCSSS
T ss_pred             HHHHHHHhcccccCHHHhcC----CCcHHHHHHHHHcCCchHHHHHHHHHHHcCCCCeEeecHHHHHHHHHHhcccCcch
Confidence            99999997765444443311    3899999999999999999999996 8999999999999999999999986511  


Q ss_pred             ---------HHHHHHHHHHHhcCCChH-HHHHHHHHHH
Q 014334          359 ---------SKTVQMIAESIYGKYAPF-QFLAYWSELW  386 (426)
Q Consensus       359 ---------~k~i~~~~~e~~g~~agw-q~l~fw~~Lw  386 (426)
                               ++++...+++.||+|+|| |.++|..+|.
T Consensus       152 ~~k~~~~~~~~~~~~~~~~~~g~y~g~a~~~Lf~~~~~  189 (190)
T d2noha1         152 QAKGPSPQTNKELGNFFRSLWGPYAGWAAAVLFSADLR  189 (190)
T ss_dssp             SCSSSCHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHT
T ss_pred             hhccccHHHHHHHHHHHHHHhcchhhHHHHHHhHHHhc
Confidence                     356777888999999999 7777777763
>d1mpga1 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosylase II (gene alkA or aidA) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]} Back     information, alignment and structure
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2noha2 d.129.1.2 (A:12-135) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mpga2 d.129.1.2 (A:1-99) 3-Methyladenine DNA glycosylase II (gene alkA or aidA) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]} Back     information, alignment and structure
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]} Back     information, alignment and structure
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]} Back     information, alignment and structure
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2bcqa1 a.60.6.1 (A:252-327) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vdda_ e.49.1.1 (A:) Recombination protein RecR {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure